Psyllid ID: psy11036
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 239 | 2.2.26 [Sep-21-2011] | |||||||
| Q5XGE2 | 515 | U3 small nucleolar RNA-as | yes | N/A | 0.577 | 0.267 | 0.477 | 8e-36 | |
| Q8TED0 | 518 | U3 small nucleolar RNA-as | yes | N/A | 0.585 | 0.270 | 0.490 | 1e-35 | |
| A7MB12 | 519 | U3 small nucleolar RNA-as | yes | N/A | 0.585 | 0.269 | 0.483 | 3e-35 | |
| Q5F3D7 | 520 | U3 small nucleolar RNA-as | yes | N/A | 0.585 | 0.269 | 0.483 | 3e-35 | |
| Q7ZXZ2 | 515 | U3 small nucleolar RNA-as | N/A | N/A | 0.577 | 0.267 | 0.470 | 1e-34 | |
| Q8C7V3 | 528 | U3 small nucleolar RNA-as | yes | N/A | 0.585 | 0.265 | 0.477 | 2e-34 | |
| A2RRU3 | 528 | U3 small nucleolar RNA-as | yes | N/A | 0.585 | 0.265 | 0.483 | 2e-34 | |
| Q5REE0 | 518 | U3 small nucleolar RNA-as | yes | N/A | 0.585 | 0.270 | 0.490 | 4e-34 | |
| Q7ZW33 | 517 | U3 small nucleolar RNA-as | yes | N/A | 0.589 | 0.272 | 0.416 | 3e-28 | |
| O94365 | 494 | U3 small nucleolar RNA-as | yes | N/A | 0.548 | 0.265 | 0.342 | 3e-17 |
| >sp|Q5XGE2|UTP15_XENTR U3 small nucleolar RNA-associated protein 15 homolog OS=Xenopus tropicalis GN=utp15 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 150 bits (379), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 100/153 (65%), Gaps = 15/153 (9%)
Query: 12 LWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYD 71
LWDIP+ +++++ HT DY+R G S +++D+ +GSYD T+ ++D
Sbjct: 148 LWDIPNGVEITSYNEHT--------------DYIRCGCTSALNNDLFATGSYDHTIKIFD 193
Query: 72 TRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTS 131
R+ VMS++HG PVESVL PSGG+ V+ GG V +WD+L GG+LL HHKTVTS
Sbjct: 194 GRTDKSVMSMDHGQPVESVLLFPSGGLLVSAGGRYVKVWDILKGGQLLVSLRNHHKTVTS 253
Query: 132 LCLASGGKRLISASLDHHAKIYE-MTLKTVSSF 163
LCL+S G+RL+SASLD H K+Y M K V SF
Sbjct: 254 LCLSSSGQRLLSASLDRHVKVYSTMNYKVVHSF 286
|
Involved in nucleolar processing of pre-18S ribosomal RNA. Xenopus tropicalis (taxid: 8364) |
| >sp|Q8TED0|UTP15_HUMAN U3 small nucleolar RNA-associated protein 15 homolog OS=Homo sapiens GN=UTP15 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 97/155 (62%), Gaps = 15/155 (9%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDIP+ ++ TF H+ DYVR G S ++ D+ I+GSYD TV +
Sbjct: 146 VKLWDIPNSKEILTFKEHS--------------DYVRCGCASKLNPDLFITGSYDHTVKM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
+D R+ + V+SV HG PVESVL PSGG+ V+ GG V +WDML GG+LL HHKTV
Sbjct: 192 FDARTSESVLSVEHGQPVESVLLFPSGGLLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163
T LCL+S G+RL+S SLD K+Y T K V SF
Sbjct: 252 TCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSF 286
|
Involved in nucleolar processing of pre-18S ribosomal RNA. Homo sapiens (taxid: 9606) |
| >sp|A7MB12|UTP15_BOVIN U3 small nucleolar RNA-associated protein 15 homolog OS=Bos taurus GN=UTP15 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 97/155 (62%), Gaps = 15/155 (9%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDIP+ ++ TF H+ DYVR G S +++D+ ++GSYD TV +
Sbjct: 146 VKLWDIPNSKEILTFKEHS--------------DYVRCGCASKLNTDLFVTGSYDHTVKM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
+D R+ V+SV HG PVESVL PSGG+ V+ GG V +WDML GG+LL HHKTV
Sbjct: 192 FDARTNQSVISVEHGQPVESVLLFPSGGLLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163
T LCL+S G+RL+S SLD K+Y T K V SF
Sbjct: 252 TCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSF 286
|
Involved in nucleolar processing of pre-18S ribosomal RNA. Bos taurus (taxid: 9913) |
| >sp|Q5F3D7|UTP15_CHICK U3 small nucleolar RNA-associated protein 15 homolog OS=Gallus gallus GN=UTP15 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 97/155 (62%), Gaps = 15/155 (9%)
Query: 11 ALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVY 70
+LWDIPS ++ +++ H+ DYVR G S ++ D+ I+GSYD TV V+
Sbjct: 147 SLWDIPSATEIVSYSEHS--------------DYVRCGCASKLNGDVFITGSYDHTVKVF 192
Query: 71 DTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVT 130
D R+ VM++ HG PVESVL PSGG+ V+ GG V +WD+L GG+LL HHKTVT
Sbjct: 193 DARTKSSVMTIEHGHPVESVLLFPSGGLLVSAGGRYVKVWDVLKGGQLLVSLKNHHKTVT 252
Query: 131 SLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFT 164
LCL S G+RL+S SLD H KIY T K V SF
Sbjct: 253 CLCLNSSGQRLLSGSLDRHVKIYSTTSYKVVHSFN 287
|
Involved in nucleolar processing of pre-18S ribosomal RNA. Gallus gallus (taxid: 9031) |
| >sp|Q7ZXZ2|UTP15_XENLA U3 small nucleolar RNA-associated protein 15 homolog OS=Xenopus laevis GN=utp15 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 98/153 (64%), Gaps = 15/153 (9%)
Query: 12 LWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYD 71
LWDIP+ +++++ HT DY+R G S +++D+ +GSYD T+ V+D
Sbjct: 148 LWDIPNGIEIASYKEHT--------------DYIRCGCTSSLNNDLFATGSYDHTIKVFD 193
Query: 72 TRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTS 131
R+ VMS++HG PVESVL PSGG+ V+ GG V +WD+L GG+LL HHKTVT
Sbjct: 194 GRTDKSVMSMDHGQPVESVLLFPSGGLLVSAGGRYVKVWDILKGGQLLVSLRNHHKTVTC 253
Query: 132 LCLASGGKRLISASLDHHAKIYE-MTLKTVSSF 163
LCL+S G+RL+S SLD H K+Y M K V SF
Sbjct: 254 LCLSSSGQRLLSGSLDRHVKVYSTMNYKVVHSF 286
|
Involved in nucleolar processing of pre-18S ribosomal RNA. Xenopus laevis (taxid: 8355) |
| >sp|Q8C7V3|UTP15_MOUSE U3 small nucleolar RNA-associated protein 15 homolog OS=Mus musculus GN=Utp15 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 95/155 (61%), Gaps = 15/155 (9%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDIP+ ++ TF H+ DYVR G S ++ D+ ++GSYD TV +
Sbjct: 146 VKLWDIPNSKEILTFKEHS--------------DYVRCGCASKLNPDLFVTGSYDHTVKI 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
+D R+ V+ V HG PVESVL PSGG+ V+ GG V +WDML GG+LL HHKTV
Sbjct: 192 FDARTNKNVLCVEHGQPVESVLLFPSGGLLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163
T LCL+S G+RL+S SLD K+Y T K V SF
Sbjct: 252 TCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSF 286
|
Involved in nucleolar processing of pre-18S ribosomal RNA. Mus musculus (taxid: 10090) |
| >sp|A2RRU3|UTP15_RAT U3 small nucleolar RNA-associated protein 15 homolog OS=Rattus norvegicus GN=Utp15 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 95/155 (61%), Gaps = 15/155 (9%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDIP+ ++ TF H+ DYVR G S ++ D+ ++GSYD TV +
Sbjct: 146 VKLWDIPNSKEILTFKEHS--------------DYVRCGCASKLNPDLFVTGSYDHTVKM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
+D R+ V+ V HG PVESVL PSGG+ V+ GG V +WDML GG+LL HHKTV
Sbjct: 192 FDARTNKNVLCVEHGQPVESVLLFPSGGLLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163
T LCL+S G+RL+S SLD KIY T K V SF
Sbjct: 252 TCLCLSSSGQRLLSGSLDRKVKIYSTTSYKVVHSF 286
|
Involved in nucleolar processing of pre-18S ribosomal RNA. Rattus norvegicus (taxid: 10116) |
| >sp|Q5REE0|UTP15_PONAB U3 small nucleolar RNA-associated protein 15 homolog OS=Pongo abelii GN=UTP15 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (364), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 96/155 (61%), Gaps = 15/155 (9%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDIP+ +V TF H+ DYVR G S ++ D+ I+GSYD TV +
Sbjct: 146 VKLWDIPNSKEVLTFKEHS--------------DYVRCGCASKLNPDLFITGSYDHTVKM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
+D R+ + V+SV HG PVESVL PSGG+ V+ GG V + DML GG+LL HHKTV
Sbjct: 192 FDARTSESVLSVEHGQPVESVLLFPSGGLLVSAGGRYVKVCDMLKGGQLLVSLKNHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163
T LCL+S G+RL+S SLD K+Y T K V SF
Sbjct: 252 TCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSF 286
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Involved in nucleolar processing of pre-18S ribosomal RNA. Pongo abelii (taxid: 9601) |
| >sp|Q7ZW33|UTP15_DANRE U3 small nucleolar RNA-associated protein 15 homolog OS=Danio rerio GN=utp15 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 15/156 (9%)
Query: 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTV 67
L +WD+ S ++S+ T HT DY+RA S ++ D+ ++GSYD TV
Sbjct: 144 LTCRVWDVASAVELSSITEHT--------------DYIRAIAPSKLNPDVFVTGSYDHTV 189
Query: 68 NVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHK 127
++D RS + VM++ HG PVE VL PS + V+ GG V +WD+L GG+ L HHK
Sbjct: 190 KMFDVRSGNSVMTMQHGQPVECVLLYPSEALLVSTGGRYVKVWDLLKGGQQLVSLKNHHK 249
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSF 163
TVT CL+S K L++ASLD H K+Y + K V +F
Sbjct: 250 TVTCACLSSSNK-LLTASLDRHVKVYNSSYKVVHNF 284
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Involved in nucleolar processing of pre-18S ribosomal RNA. Danio rerio (taxid: 7955) |
| >sp|O94365|UTP15_SCHPO U3 small nucleolar RNA-associated protein 15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp15 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 81/149 (54%), Gaps = 18/149 (12%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V +WD+ + A + H +DYVR T S +S+ ++SG YD T+ +
Sbjct: 148 VKVWDLSTGAVQYDLSGH--------------EDYVR--TASWMSATRLVSGGYDGTIRL 191
Query: 70 YDTRSPDP-VMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKL-LHKFTCHHK 127
+DTR DP VMS +HG ++ VL + SG ++ GG + +WD++ G + K + H K
Sbjct: 192 WDTRIADPEVMSFSHGEAIDVVLPMQSGSTVISAGGPSIKVWDLVAGRQTPTKKLSNHQK 251
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMT 156
++T L + S RL+S LD H KIY ++
Sbjct: 252 SITCLAMNSENTRLLSGGLDGHVKIYNIS 280
|
Involved in nucleolar processing of pre-18S ribosomal RNA. Required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 239 | ||||||
| 332022845 | 524 | U3 small nucleolar RNA-associated protei | 0.573 | 0.261 | 0.565 | 1e-41 | |
| 322800310 | 537 | hypothetical protein SINV_00608 [Solenop | 0.573 | 0.255 | 0.565 | 2e-41 | |
| 350416832 | 521 | PREDICTED: U3 small nucleolar RNA-associ | 0.585 | 0.268 | 0.529 | 1e-39 | |
| 307179470 | 523 | U3 small nucleolar RNA-associated protei | 0.573 | 0.261 | 0.519 | 4e-39 | |
| 380016726 | 521 | PREDICTED: U3 small nucleolar RNA-associ | 0.585 | 0.268 | 0.522 | 1e-38 | |
| 340727992 | 538 | PREDICTED: u3 small nucleolar RNA-associ | 0.581 | 0.258 | 0.519 | 2e-38 | |
| 328780713 | 521 | PREDICTED: u3 small nucleolar RNA-associ | 0.585 | 0.268 | 0.516 | 2e-38 | |
| 383863544 | 521 | PREDICTED: U3 small nucleolar RNA-associ | 0.577 | 0.264 | 0.496 | 3e-37 | |
| 157134789 | 530 | U3 small nucleolar RNA-associated protei | 0.556 | 0.250 | 0.503 | 4e-37 | |
| 357626821 | 523 | putative U3 small nucleolar RNA-associat | 0.573 | 0.261 | 0.513 | 1e-36 |
| >gi|332022845|gb|EGI63118.1| U3 small nucleolar RNA-associated protein 15-like protein [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 107/152 (70%), Gaps = 15/152 (9%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
VALWDIPSE Q+++F HT DYVRAG VSPVSSD+++SG YDK VN+
Sbjct: 146 VALWDIPSEKQLTSFNEHT--------------DYVRAGAVSPVSSDVLLSGGYDKIVNM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
YD R+ V SVNH +PVES+L LP+GGIF++ GG D+ +WD L GGKLL K T HHKT+
Sbjct: 192 YDARTNKKVFSVNHNAPVESLLFLPTGGIFLSAGGTDIKVWDALAGGKLLAKITQHHKTI 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEM-TLKTV 160
T L +AS G R++S SLD H KIY+ T KT+
Sbjct: 252 TCLKIASNGHRILSGSLDRHVKIYDAGTYKTL 283
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322800310|gb|EFZ21314.1| hypothetical protein SINV_00608 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 108/152 (71%), Gaps = 15/152 (9%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
VALWDIPSE Q+ +F HT DYVRAGTVSPVS+D+++SG YDK VN+
Sbjct: 146 VALWDIPSEKQLISFNEHT--------------DYVRAGTVSPVSTDVLLSGGYDKIVNM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
YD R+ ++SVNH +PVES+L LP+GGIF++ GG D+ +WD L GGKLL K T HHKTV
Sbjct: 192 YDARTNKKILSVNHDAPVESLLFLPTGGIFLSAGGTDIKVWDALAGGKLLAKITQHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEM-TLKTV 160
T L +AS G R++S SLD H KIY+ T KT+
Sbjct: 252 TCLKIASNGHRIMSGSLDRHVKIYDAGTYKTL 283
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350416832|ref|XP_003491125.1| PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 108/155 (69%), Gaps = 15/155 (9%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
VA+WDIPSE Q+ +F H+ DY+RAG VSP+S+DI++SG YDK + +
Sbjct: 146 VAVWDIPSEKQIISFNEHS--------------DYIRAGAVSPISTDILLSGGYDKHIYM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
YDTR+ ++SVNH +PVES+L LPSGGIF++ GG ++ +WD L GG+LL K T HHKTV
Sbjct: 192 YDTRTSKQILSVNHEAPVESLLFLPSGGIFLSAGGTEIRVWDALAGGRLLAKITQHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEM-TLKTVSSF 163
T L +AS G R++S SLD H KIY+ T KTV S
Sbjct: 252 TCLKIASNGHRILSGSLDRHVKIYDSGTYKTVHSL 286
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307179470|gb|EFN67794.1| U3 small nucleolar RNA-associated protein 15-like protein [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 107/152 (70%), Gaps = 15/152 (9%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDI SE Q+++F H DY+RAG VSPVS+D+++SG YDK +++
Sbjct: 146 VVLWDIASEKQLTSFNEHI--------------DYIRAGAVSPVSTDVLLSGGYDKIIHM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
YDTR+ ++SVNH +PVES+L LP+GGIF++ GG D+ +WD L GGKLL K T HHKTV
Sbjct: 192 YDTRTNKKILSVNHDAPVESLLFLPTGGIFLSAGGTDIKVWDALAGGKLLAKITQHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEM-TLKTV 160
T L +AS G+R++S SLD H K+Y+ T KT+
Sbjct: 252 TCLKIASNGRRILSGSLDRHVKVYDTGTYKTL 283
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380016726|ref|XP_003692326.1| PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 106/155 (68%), Gaps = 15/155 (9%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V +WDIPSE Q+ +F H+ DY+RAG VSP+SSDI++SG YDK + +
Sbjct: 146 VIIWDIPSETQIISFNEHS--------------DYIRAGAVSPISSDILLSGGYDKHIYM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
YDTR+ + SV+H +PVES+L LPSGGIF++ GG ++ +WD L GG+LL K T HHKTV
Sbjct: 192 YDTRTSKKIFSVSHEAPVESLLFLPSGGIFLSAGGTEIRVWDALAGGRLLAKITQHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEM-TLKTVSSF 163
T L +AS G R++S SLD H KIY+ T KTV S
Sbjct: 252 TCLKIASNGHRILSGSLDRHVKIYDSGTYKTVHSL 286
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340727992|ref|XP_003402317.1| PREDICTED: u3 small nucleolar RNA-associated protein 15 homolog [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 107/154 (69%), Gaps = 15/154 (9%)
Query: 11 ALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVY 70
A+WDIPSE Q+ +F H+ DY+RAG VSP+S+DI++SG YDK + +Y
Sbjct: 147 AVWDIPSEKQIISFNEHS--------------DYIRAGAVSPISTDILLSGGYDKHIYMY 192
Query: 71 DTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVT 130
DTR+ +++VNH +PVES+L LPSGGIF++ GG ++ +WD L GG+LL K T HHKTVT
Sbjct: 193 DTRTNKQILNVNHEAPVESLLFLPSGGIFLSAGGTEIRVWDALAGGRLLAKITQHHKTVT 252
Query: 131 SLCLASGGKRLISASLDHHAKIYEM-TLKTVSSF 163
L +AS G R++S SLD H KIY+ T KTV S
Sbjct: 253 CLKIASNGHRILSGSLDRHVKIYDSGTYKTVHSL 286
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328780713|ref|XP_396382.3| PREDICTED: u3 small nucleolar RNA-associated protein 15 homolog [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 106/155 (68%), Gaps = 15/155 (9%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V +WDIPSE Q+ +F H+ DY+RAG VSP+S+DI++SG YDK + +
Sbjct: 146 VIIWDIPSETQIISFNEHS--------------DYIRAGAVSPISNDILLSGGYDKHIYM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
YDTR+ + SV+H +PVES+L LPSGGIF++ GG ++ +WD L GG+LL K T HHKTV
Sbjct: 192 YDTRTSKKIFSVSHEAPVESLLFLPSGGIFLSAGGTEIRVWDALAGGRLLAKITQHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEM-TLKTVSSF 163
T L +AS G R++S SLD H KIY+ T KTV S
Sbjct: 252 TCLKIASNGHRILSGSLDRHVKIYDSGTYKTVHSL 286
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383863544|ref|XP_003707240.1| PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 107/153 (69%), Gaps = 15/153 (9%)
Query: 12 LWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYD 71
+WDIP+E Q ++F +H+ DY+RAG VSP+S+DI++SG YDK + +YD
Sbjct: 148 IWDIPTEKQTASFNDHS--------------DYIRAGAVSPISTDILLSGGYDKNIYMYD 193
Query: 72 TRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTS 131
TR+ ++SV+H +PVES+L LPSGGIF++ GG ++ +WD L GG+LL K + HHKTVT
Sbjct: 194 TRTNKKILSVSHEAPVESLLFLPSGGIFLSAGGTEIRVWDGLAGGRLLAKISQHHKTVTC 253
Query: 132 LCLASGGKRLISASLDHHAKIYEM-TLKTVSSF 163
L +AS G R++S SLD H KIY+ T +TV S
Sbjct: 254 LKIASNGHRILSGSLDRHVKIYDSGTYRTVHSL 286
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157134789|ref|XP_001656443.1| U3 small nucleolar RNA-associated protein, putative [Aedes aegypti] gi|108884320|gb|EAT48545.1| AAEL000422-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 101/147 (68%), Gaps = 14/147 (9%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V WDI +E VSTF+ H DY+RAG SPVS +I++SG YDK +N+
Sbjct: 146 VRYWDIATEKHVSTFSEHA--------------DYIRAGCTSPVSPNIIVSGGYDKKINM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
YDTR+ + V+S++HGSPVES++ LPSGGIF++ GG V ++D L GG+ + + + HHKT+
Sbjct: 192 YDTRTKEKVLSLDHGSPVESLIFLPSGGIFISAGGTSVNVYDALAGGRKIAQLSQHHKTI 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEMT 156
T L LAS GKRL+S SLD H KIY++
Sbjct: 252 TCLQLASDGKRLLSGSLDRHVKIYDIA 278
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357626821|gb|EHJ76746.1| putative U3 small nucleolar RNA-associated protein [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 102/152 (67%), Gaps = 15/152 (9%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDI +E ++++F HT DYVRAG SP+ DI++SG YD V +
Sbjct: 150 VCLWDIATEEKIASFCEHT--------------DYVRAGAPSPILPDIILSGGYDHAVKL 195
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
YD RS + V++V+HGSPVES L LPSGGIF++ GG ++ +WD+ GGKLL + HHKTV
Sbjct: 196 YDCRSNETVLTVDHGSPVESTLFLPSGGIFISAGGTEIKVWDIFNGGKLLANISQHHKTV 255
Query: 130 TSLCLASGGKRLISASLDHHAKIYEM-TLKTV 160
T+L LAS RL+SASLD H KIY++ T K V
Sbjct: 256 TTLRLASNNSRLMSASLDRHVKIYDLATFKVV 287
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 239 | ||||||
| UNIPROTKB|Q8TED0 | 518 | UTP15 "U3 small nucleolar RNA- | 0.585 | 0.270 | 0.490 | 2e-33 | |
| UNIPROTKB|B4DXK8 | 499 | UTP15 "cDNA FLJ57656, highly s | 0.585 | 0.280 | 0.490 | 2e-33 | |
| UNIPROTKB|Q5F3D7 | 520 | UTP15 "U3 small nucleolar RNA- | 0.581 | 0.267 | 0.487 | 2e-33 | |
| UNIPROTKB|H0Y8P4 | 545 | UTP15 "U3 small nucleolar RNA- | 0.585 | 0.256 | 0.490 | 3e-33 | |
| UNIPROTKB|A7MB12 | 519 | UTP15 "U3 small nucleolar RNA- | 0.585 | 0.269 | 0.483 | 4.1e-33 | |
| UNIPROTKB|F1S2K2 | 518 | UTP15 "Uncharacterized protein | 0.585 | 0.270 | 0.477 | 1.9e-32 | |
| MGI|MGI:2145443 | 528 | Utp15 "UTP15, U3 small nucleol | 0.585 | 0.265 | 0.477 | 2.4e-32 | |
| RGD|1310992 | 528 | Utp15 "UTP15, U3 small nucleol | 0.585 | 0.265 | 0.483 | 3.3e-32 | |
| UNIPROTKB|F6XII0 | 517 | UTP15 "Uncharacterized protein | 0.585 | 0.270 | 0.477 | 3e-31 | |
| UNIPROTKB|E2QVD0 | 518 | UTP15 "Uncharacterized protein | 0.585 | 0.270 | 0.477 | 3.1e-31 |
| UNIPROTKB|Q8TED0 UTP15 "U3 small nucleolar RNA-associated protein 15 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 76/155 (49%), Positives = 97/155 (62%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDIP+ ++ TF H+ DYVR G S ++ D+ I+GSYD TV +
Sbjct: 146 VKLWDIPNSKEILTFKEHS--------------DYVRCGCASKLNPDLFITGSYDHTVKM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
+D R+ + V+SV HG PVESVL PSGG+ V+ GG V +WDML GG+LL HHKTV
Sbjct: 192 FDARTSESVLSVEHGQPVESVLLFPSGGLLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163
T LCL+S G+RL+S SLD K+Y T K V SF
Sbjct: 252 TCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSF 286
|
|
| UNIPROTKB|B4DXK8 UTP15 "cDNA FLJ57656, highly similar to U3 small nucleolar RNA-associated protein 15 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 76/155 (49%), Positives = 97/155 (62%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDIP+ ++ TF H+ DYVR G S ++ D+ I+GSYD TV +
Sbjct: 127 VKLWDIPNSKEILTFKEHS--------------DYVRCGCASKLNPDLFITGSYDHTVKM 172
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
+D R+ + V+SV HG PVESVL PSGG+ V+ GG V +WDML GG+LL HHKTV
Sbjct: 173 FDARTSESVLSVEHGQPVESVLLFPSGGLLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTV 232
Query: 130 TSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163
T LCL+S G+RL+S SLD K+Y T K V SF
Sbjct: 233 TCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSF 267
|
|
| UNIPROTKB|Q5F3D7 UTP15 "U3 small nucleolar RNA-associated protein 15 homolog" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 75/154 (48%), Positives = 97/154 (62%)
Query: 11 ALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVY 70
+LWDIPS ++ +++ H+ DYVR G S ++ D+ I+GSYD TV V+
Sbjct: 147 SLWDIPSATEIVSYSEHS--------------DYVRCGCASKLNGDVFITGSYDHTVKVF 192
Query: 71 DTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVT 130
D R+ VM++ HG PVESVL PSGG+ V+ GG V +WD+L GG+LL HHKTVT
Sbjct: 193 DARTKSSVMTIEHGHPVESVLLFPSGGLLVSAGGRYVKVWDVLKGGQLLVSLKNHHKTVT 252
Query: 131 SLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163
LCL S G+RL+S SLD H KIY T K V SF
Sbjct: 253 CLCLNSSGQRLLSGSLDRHVKIYSTTSYKVVHSF 286
|
|
| UNIPROTKB|H0Y8P4 UTP15 "U3 small nucleolar RNA-associated protein 15 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 364 (133.2 bits), Expect = 3.0e-33, P = 3.0e-33
Identities = 76/155 (49%), Positives = 97/155 (62%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDIP+ ++ TF H+ DYVR G S ++ D+ I+GSYD TV +
Sbjct: 173 VKLWDIPNSKEILTFKEHS--------------DYVRCGCASKLNPDLFITGSYDHTVKM 218
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
+D R+ + V+SV HG PVESVL PSGG+ V+ GG V +WDML GG+LL HHKTV
Sbjct: 219 FDARTSESVLSVEHGQPVESVLLFPSGGLLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTV 278
Query: 130 TSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163
T LCL+S G+RL+S SLD K+Y T K V SF
Sbjct: 279 TCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSF 313
|
|
| UNIPROTKB|A7MB12 UTP15 "U3 small nucleolar RNA-associated protein 15 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 75/155 (48%), Positives = 97/155 (62%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDIP+ ++ TF H+ DYVR G S +++D+ ++GSYD TV +
Sbjct: 146 VKLWDIPNSKEILTFKEHS--------------DYVRCGCASKLNTDLFVTGSYDHTVKM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
+D R+ V+SV HG PVESVL PSGG+ V+ GG V +WDML GG+LL HHKTV
Sbjct: 192 FDARTNQSVISVEHGQPVESVLLFPSGGLLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163
T LCL+S G+RL+S SLD K+Y T K V SF
Sbjct: 252 TCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSF 286
|
|
| UNIPROTKB|F1S2K2 UTP15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 1.9e-32, P = 1.9e-32
Identities = 74/155 (47%), Positives = 96/155 (61%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDIP+ ++ TF H+ DYVR G S ++ D+ ++GSYD TV +
Sbjct: 146 VKLWDIPNSKEILTFKEHS--------------DYVRCGCASKLNPDLFVTGSYDHTVKM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
+D R+ V+SV HG PVESVL PSGG+ V+ GG V +WD+L GG+LL HHKTV
Sbjct: 192 FDARTNQSVISVEHGQPVESVLLFPSGGLLVSAGGRYVKVWDVLKGGQLLVSLKNHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163
T LCL+S G+RL+S SLD K+Y T K V SF
Sbjct: 252 TCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSF 286
|
|
| MGI|MGI:2145443 Utp15 "UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 2.4e-32, P = 2.4e-32
Identities = 74/155 (47%), Positives = 95/155 (61%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDIP+ ++ TF H+ DYVR G S ++ D+ ++GSYD TV +
Sbjct: 146 VKLWDIPNSKEILTFKEHS--------------DYVRCGCASKLNPDLFVTGSYDHTVKI 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
+D R+ V+ V HG PVESVL PSGG+ V+ GG V +WDML GG+LL HHKTV
Sbjct: 192 FDARTNKNVLCVEHGQPVESVLLFPSGGLLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163
T LCL+S G+RL+S SLD K+Y T K V SF
Sbjct: 252 TCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSF 286
|
|
| RGD|1310992 Utp15 "UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 3.3e-32, P = 3.3e-32
Identities = 75/155 (48%), Positives = 95/155 (61%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDIP+ ++ TF H+ DYVR G S ++ D+ ++GSYD TV +
Sbjct: 146 VKLWDIPNSKEILTFKEHS--------------DYVRCGCASKLNPDLFVTGSYDHTVKM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
+D R+ V+ V HG PVESVL PSGG+ V+ GG V +WDML GG+LL HHKTV
Sbjct: 192 FDARTNKNVLCVEHGQPVESVLLFPSGGLLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163
T LCL+S G+RL+S SLD KIY T K V SF
Sbjct: 252 TCLCLSSSGQRLLSGSLDRKVKIYSTTSYKVVHSF 286
|
|
| UNIPROTKB|F6XII0 UTP15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 3.0e-31, P = 3.0e-31
Identities = 74/155 (47%), Positives = 94/155 (60%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDIP+ ++ TF H+ DYVR G S ++ D+ ++GSYD TV +
Sbjct: 146 VKLWDIPNSKEIVTFKEHS--------------DYVRCGCASKLNPDLFVTGSYDHTVKM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
+D R+ V+SV HG PVESVL PSGG+ + GG V IWDML GG+LL HHKTV
Sbjct: 192 FDARTNQSVISVEHGQPVESVLLFPSGGLLASAGGRYVKIWDMLKGGQLLVSLKNHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163
T L L+S G+RL+S SLD K+Y T K V SF
Sbjct: 252 TCLYLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSF 286
|
|
| UNIPROTKB|E2QVD0 UTP15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 3.1e-31, P = 3.1e-31
Identities = 74/155 (47%), Positives = 94/155 (60%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWDIP+ ++ TF H+ DYVR G S ++ D+ ++GSYD TV +
Sbjct: 146 VKLWDIPNSKEIVTFKEHS--------------DYVRCGCASKLNPDLFVTGSYDHTVKM 191
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV 129
+D R+ V+SV HG PVESVL PSGG+ + GG V IWDML GG+LL HHKTV
Sbjct: 192 FDARTNQSVISVEHGQPVESVLLFPSGGLLASAGGRYVKIWDMLKGGQLLVSLKNHHKTV 251
Query: 130 TSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163
T L L+S G+RL+S SLD K+Y T K V SF
Sbjct: 252 TCLYLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSF 286
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 239 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-21 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-11 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 1e-24
Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 44/231 (19%)
Query: 12 LWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYD 71
LWD+ + V T T HT YV + SP I+ S S DKT+ V+D
Sbjct: 77 LWDLETGECVRTLTGHT--------------SYVSSVAFSP-DGRILSSSSRDKTIKVWD 121
Query: 72 TRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGGGLD--VCIWDMLGGGKLLHKFTCHHKT 128
+ + ++ H V SV P G FV D + +WD L GK + T H
Sbjct: 122 VETGKCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWD-LRTGKCVATLTGHTGE 179
Query: 129 VTSLCLASGGKRLISASLDHHAKIYEM-TLKTVSSFTGGLD------------------- 168
V S+ + G++L+S+S D K++++ T K + + G +
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE 239
Query: 169 ---VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
+ +WD L G+ + + H +VTSL + GKRL S S D +I++
Sbjct: 240 DGTIRVWD-LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 7e-21
Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 39/233 (16%)
Query: 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVN 68
+ +WD+ + + T HT VR S + + SGS DKT+
Sbjct: 32 TIKVWDLETGELLRTLKGHT--------------GPVRDVAASADGTYLA-SGSSDKTIR 76
Query: 69 VYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGGG-LDVCIWDMLGGGKLLHKFTCHH 126
++D + + V ++ H S V SV P G I + + +WD+ G K L H
Sbjct: 77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHT 135
Query: 127 KTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC 186
V S+ + G + S+S D K+ WD L GK + T
Sbjct: 136 DWVNSVAFSPDGTFVASSSQDGTIKL-------------------WD-LRTGKCVATLTG 175
Query: 187 HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDY-PSPVLSIDVS 238
H V S+ + G++L+S+S D K++++ + TL + V S+ S
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-17
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 24/188 (12%)
Query: 54 SSDIVISGSYDKTVNVYDTRSPDPVMS-VNHGSPVESVLCLPSGG-IFVTGGGLDVCIWD 111
++ +GS D T+ V+D + + + + H PV V G + + +WD
Sbjct: 20 DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79
Query: 112 MLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCI 171
L G+ + T H V+S+ + G+ L S+S D KT+ +
Sbjct: 80 -LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD----------KTI---------KV 119
Query: 172 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPS 230
WD+ G K L H V S+ + G + S+S D K++++ V TL +
Sbjct: 120 WDVETG-KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG 178
Query: 231 PVLSIDVS 238
V S+ S
Sbjct: 179 EVNSVAFS 186
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.0 bits (162), Expect = 8e-13
Identities = 58/233 (24%), Positives = 91/233 (39%), Gaps = 37/233 (15%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ LWD+ + +ST HT D V + SP ++ SGS D T+ +
Sbjct: 180 IKLWDLRTGKPLSTLAGHT--------------DPVSSLAFSPDGGLLIASGSSDGTIRL 225
Query: 70 YDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLD--VCIWDMLGGGKLLHKFTCHHK 127
+D + + S G V G + G D + +WD+ LL + H
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKL-LHKFTC 186
+V S+ + GK L S S D V +WD+ G L
Sbjct: 286 SVLSVAFSPDGKLLASGSSDG-------------------TVRLWDLETGKLLSSLTLKG 326
Query: 187 HHKTVTSLCLASGGKRLISA-SLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVS 238
H V+SL + G L+S S D +++++ P+ TL+ S VLS+ S
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFS 379
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.8 bits (151), Expect = 2e-11
Identities = 49/190 (25%), Positives = 76/190 (40%), Gaps = 28/190 (14%)
Query: 32 KVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS---VNHGSPVE 88
L S V + SP ++ SGS D TV ++D + + S H PV
Sbjct: 274 SSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332
Query: 89 SVLCLPSGGIFVTGGGLD--VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL 146
S+ P G + V+GG D + +WD+ G L H V S+ + G+ + S S
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE--GHSNVLSVSFSPDGRVVSSGST 390
Query: 147 DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA 206
D ++++ L G LL H VTSL + GK L S
Sbjct: 391 DGTVRLWD--------------------LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430
Query: 207 SLDHHAKIYE 216
S D+ ++++
Sbjct: 431 SSDNTIRLWD 440
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 25/145 (17%)
Query: 118 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSS--------------- 162
L H VT + + GK L + S D K++++ +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 163 ------FTGGLD--VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 214
+G D + +WD L G+ + T H V+S+ + G+ L S+S D K+
Sbjct: 61 ADGTYLASGSSDKTIRLWD-LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 215 YEMVNFSPVHTLDY-PSPVLSIDVS 238
+++ + TL V S+ S
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFS 144
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.1 bits (131), Expect = 8e-09
Identities = 61/270 (22%), Positives = 111/270 (41%), Gaps = 36/270 (13%)
Query: 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS 62
+ L +L + + + ++ + +L +D + + SP ++++SGS
Sbjct: 26 NSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSP-DGELLLSGS 84
Query: 63 YDKTVNVYDTRSPDPVMSVNHGSPVESVLCL----PSGGIFVTGGGLD---VCIWDMLGG 115
D T+ ++D + + ++ G SV L P G + V +WD+
Sbjct: 85 SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144
Query: 116 GKLLHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEM-TLKTVSSFTG-------- 165
GKL+ H ++VTSL + GK L S S LD K++++ T K +S+ G
Sbjct: 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204
Query: 166 ---------------GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH 210
+ +WD+ G L + H +V S + G L S S D
Sbjct: 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDG 263
Query: 211 HAKIYEMVNF-SPVHTLDYPS-PVLSIDVS 238
+++++ + S + TL S VLS+ S
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 5e-04
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 116 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 154
G+LL H VTS+ + GK L S S D K+++
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 5e-04
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 178 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
G+LL H VTS+ + GK L S S D K+++
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 34.6 bits (80), Expect = 0.002
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 116 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIY 153
GKLL H VTS+ + G L S S D +++
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 34.6 bits (80), Expect = 0.002
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 178 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIY 215
GKLL H VTS+ + G L S S D +++
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 239 | |||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0282|consensus | 503 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| PTZ00420 | 568 | coronin; Provisional | 100.0 | |
| KOG0276|consensus | 794 | 100.0 | ||
| KOG0310|consensus | 487 | 100.0 | ||
| KOG0292|consensus | 1202 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0316|consensus | 307 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0277|consensus | 311 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| KOG1407|consensus | 313 | 100.0 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.98 | |
| KOG0643|consensus | 327 | 99.98 | ||
| KOG0291|consensus | 893 | 99.97 | ||
| KOG0281|consensus | 499 | 99.97 | ||
| KOG0266|consensus | 456 | 99.97 | ||
| KOG0313|consensus | 423 | 99.97 | ||
| KOG0318|consensus | 603 | 99.97 | ||
| KOG1446|consensus | 311 | 99.97 | ||
| KOG0275|consensus | 508 | 99.97 | ||
| KOG0277|consensus | 311 | 99.97 | ||
| KOG0295|consensus | 406 | 99.97 | ||
| KOG0273|consensus | 524 | 99.97 | ||
| KOG0289|consensus | 506 | 99.97 | ||
| KOG0318|consensus | 603 | 99.97 | ||
| KOG0293|consensus | 519 | 99.97 | ||
| KOG0269|consensus | 839 | 99.97 | ||
| KOG0265|consensus | 338 | 99.97 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0305|consensus | 484 | 99.97 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0281|consensus | 499 | 99.97 | ||
| KOG0316|consensus | 307 | 99.96 | ||
| KOG0310|consensus | 487 | 99.96 | ||
| KOG0319|consensus | 775 | 99.96 | ||
| KOG0278|consensus | 334 | 99.96 | ||
| KOG0275|consensus | 508 | 99.96 | ||
| KOG0274|consensus | 537 | 99.96 | ||
| KOG0647|consensus | 347 | 99.96 | ||
| KOG0288|consensus | 459 | 99.96 | ||
| KOG0646|consensus | 476 | 99.96 | ||
| KOG0308|consensus | 735 | 99.96 | ||
| KOG0283|consensus | 712 | 99.96 | ||
| KOG0973|consensus | 942 | 99.96 | ||
| KOG0264|consensus | 422 | 99.96 | ||
| KOG0276|consensus | 794 | 99.96 | ||
| KOG0305|consensus | 484 | 99.96 | ||
| KOG0267|consensus | 825 | 99.96 | ||
| KOG0274|consensus | 537 | 99.96 | ||
| KOG0296|consensus | 399 | 99.96 | ||
| KOG0643|consensus | 327 | 99.96 | ||
| KOG0294|consensus | 362 | 99.96 | ||
| KOG0306|consensus | 888 | 99.96 | ||
| KOG0282|consensus | 503 | 99.95 | ||
| KOG0264|consensus | 422 | 99.95 | ||
| KOG1539|consensus | 910 | 99.95 | ||
| KOG0640|consensus | 430 | 99.95 | ||
| KOG0292|consensus | 1202 | 99.95 | ||
| KOG0278|consensus | 334 | 99.95 | ||
| KOG0300|consensus | 481 | 99.95 | ||
| KOG0283|consensus | 712 | 99.95 | ||
| KOG1407|consensus | 313 | 99.95 | ||
| KOG0289|consensus | 506 | 99.95 | ||
| KOG0308|consensus | 735 | 99.95 | ||
| KOG0306|consensus | 888 | 99.95 | ||
| KOG1036|consensus | 323 | 99.95 | ||
| KOG0772|consensus | 641 | 99.95 | ||
| KOG0299|consensus | 479 | 99.94 | ||
| KOG0640|consensus | 430 | 99.94 | ||
| KOG4283|consensus | 397 | 99.94 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.94 | |
| KOG0268|consensus | 433 | 99.94 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0302|consensus | 440 | 99.94 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG1332|consensus | 299 | 99.94 | ||
| KOG0293|consensus | 519 | 99.94 | ||
| KOG0639|consensus | 705 | 99.94 | ||
| KOG1446|consensus | 311 | 99.94 | ||
| KOG0269|consensus | 839 | 99.93 | ||
| KOG1274|consensus | 933 | 99.93 | ||
| KOG0313|consensus | 423 | 99.93 | ||
| KOG0772|consensus | 641 | 99.93 | ||
| KOG0641|consensus | 350 | 99.93 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.93 | |
| KOG0268|consensus | 433 | 99.93 | ||
| KOG1408|consensus | 1080 | 99.93 | ||
| KOG0301|consensus | 745 | 99.92 | ||
| KOG4378|consensus | 673 | 99.92 | ||
| KOG0973|consensus | 942 | 99.92 | ||
| KOG0270|consensus | 463 | 99.92 | ||
| KOG2919|consensus | 406 | 99.91 | ||
| KOG0646|consensus | 476 | 99.91 | ||
| KOG0307|consensus | 1049 | 99.91 | ||
| KOG0299|consensus | 479 | 99.91 | ||
| KOG0267|consensus | 825 | 99.91 | ||
| KOG0270|consensus | 463 | 99.9 | ||
| KOG0302|consensus | 440 | 99.9 | ||
| KOG0641|consensus | 350 | 99.9 | ||
| KOG0301|consensus | 745 | 99.9 | ||
| KOG0288|consensus | 459 | 99.89 | ||
| KOG4283|consensus | 397 | 99.89 | ||
| KOG0290|consensus | 364 | 99.89 | ||
| KOG2048|consensus | 691 | 99.89 | ||
| KOG2096|consensus | 420 | 99.89 | ||
| KOG1539|consensus | 910 | 99.89 | ||
| KOG0303|consensus | 472 | 99.89 | ||
| KOG1034|consensus | 385 | 99.89 | ||
| KOG2445|consensus | 361 | 99.89 | ||
| KOG2096|consensus | 420 | 99.89 | ||
| KOG0300|consensus | 481 | 99.89 | ||
| KOG0321|consensus | 720 | 99.89 | ||
| KOG0639|consensus | 705 | 99.89 | ||
| KOG4328|consensus | 498 | 99.88 | ||
| KOG1007|consensus | 370 | 99.88 | ||
| KOG1332|consensus | 299 | 99.88 | ||
| KOG0647|consensus | 347 | 99.88 | ||
| KOG0321|consensus | 720 | 99.88 | ||
| KOG2106|consensus | 626 | 99.88 | ||
| KOG2055|consensus | 514 | 99.87 | ||
| KOG1273|consensus | 405 | 99.86 | ||
| KOG1009|consensus | 434 | 99.86 | ||
| KOG2445|consensus | 361 | 99.86 | ||
| KOG1036|consensus | 323 | 99.86 | ||
| KOG0294|consensus | 362 | 99.86 | ||
| KOG1188|consensus | 376 | 99.86 | ||
| KOG4328|consensus | 498 | 99.86 | ||
| KOG1408|consensus | 1080 | 99.85 | ||
| KOG1445|consensus | 1012 | 99.85 | ||
| KOG0642|consensus | 577 | 99.85 | ||
| KOG4378|consensus | 673 | 99.85 | ||
| KOG2055|consensus | 514 | 99.85 | ||
| KOG1524|consensus | 737 | 99.84 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.84 | |
| KOG2048|consensus | 691 | 99.84 | ||
| KOG0650|consensus | 733 | 99.84 | ||
| KOG2106|consensus | 626 | 99.84 | ||
| KOG1538|consensus | 1081 | 99.83 | ||
| KOG2919|consensus | 406 | 99.83 | ||
| KOG2110|consensus | 391 | 99.83 | ||
| KOG0307|consensus | 1049 | 99.83 | ||
| KOG1063|consensus | 764 | 99.83 | ||
| KOG1445|consensus | 1012 | 99.82 | ||
| KOG0771|consensus | 398 | 99.82 | ||
| KOG1274|consensus | 933 | 99.82 | ||
| KOG3881|consensus | 412 | 99.82 | ||
| KOG1007|consensus | 370 | 99.81 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.81 | |
| KOG1273|consensus | 405 | 99.8 | ||
| KOG2394|consensus | 636 | 99.8 | ||
| KOG0771|consensus | 398 | 99.8 | ||
| KOG1034|consensus | 385 | 99.8 | ||
| KOG0644|consensus | 1113 | 99.8 | ||
| KOG0649|consensus | 325 | 99.8 | ||
| KOG1009|consensus | 434 | 99.8 | ||
| KOG1063|consensus | 764 | 99.79 | ||
| KOG1272|consensus | 545 | 99.79 | ||
| KOG1587|consensus | 555 | 99.78 | ||
| KOG0650|consensus | 733 | 99.78 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.77 | |
| KOG1188|consensus | 376 | 99.77 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.77 | |
| KOG1963|consensus | 792 | 99.76 | ||
| KOG0649|consensus | 325 | 99.76 | ||
| KOG0290|consensus | 364 | 99.76 | ||
| KOG1523|consensus | 361 | 99.76 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG2111|consensus | 346 | 99.75 | ||
| KOG2110|consensus | 391 | 99.75 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.74 | |
| KOG1272|consensus | 545 | 99.74 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.74 | |
| KOG0303|consensus | 472 | 99.74 | ||
| KOG1523|consensus | 361 | 99.74 | ||
| KOG0322|consensus | 323 | 99.73 | ||
| KOG0322|consensus | 323 | 99.73 | ||
| KOG1517|consensus | 1387 | 99.72 | ||
| KOG1310|consensus | 758 | 99.72 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG1517|consensus | 1387 | 99.72 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.71 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.71 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.7 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.69 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG1524|consensus | 737 | 99.69 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG2139|consensus | 445 | 99.68 | ||
| KOG2139|consensus | 445 | 99.68 | ||
| KOG1538|consensus | 1081 | 99.68 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.67 | |
| KOG4227|consensus | 609 | 99.66 | ||
| KOG0644|consensus | 1113 | 99.66 | ||
| KOG4497|consensus | 447 | 99.66 | ||
| KOG2111|consensus | 346 | 99.64 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.64 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.63 | |
| KOG1587|consensus | 555 | 99.63 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.62 | |
| KOG1240|consensus | 1431 | 99.62 | ||
| KOG2394|consensus | 636 | 99.61 | ||
| KOG4547|consensus | 541 | 99.59 | ||
| KOG0642|consensus | 577 | 99.59 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.58 | |
| KOG1240|consensus | 1431 | 99.58 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG4547|consensus | 541 | 99.57 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG0280|consensus | 339 | 99.56 | ||
| KOG2321|consensus | 703 | 99.56 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG2315|consensus | 566 | 99.54 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.54 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.51 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG0974|consensus | 967 | 99.5 | ||
| KOG1963|consensus | 792 | 99.49 | ||
| KOG3881|consensus | 412 | 99.49 | ||
| KOG2321|consensus | 703 | 99.46 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.44 | |
| KOG1064|consensus | 2439 | 99.42 | ||
| KOG1310|consensus | 758 | 99.42 | ||
| KOG3914|consensus | 390 | 99.4 | ||
| KOG1064|consensus | 2439 | 99.39 | ||
| KOG4227|consensus | 609 | 99.39 | ||
| KOG4497|consensus | 447 | 99.38 | ||
| KOG0974|consensus | 967 | 99.37 | ||
| KOG0309|consensus | 1081 | 99.36 | ||
| KOG0280|consensus | 339 | 99.36 | ||
| KOG1409|consensus | 404 | 99.35 | ||
| KOG2695|consensus | 425 | 99.34 | ||
| KOG1334|consensus | 559 | 99.34 | ||
| KOG1354|consensus | 433 | 99.3 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.29 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.29 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.27 | |
| KOG1354|consensus | 433 | 99.27 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.27 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.27 | |
| KOG4532|consensus | 344 | 99.26 | ||
| KOG2315|consensus | 566 | 99.22 | ||
| KOG1409|consensus | 404 | 99.22 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.19 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.18 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.18 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.18 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.17 | |
| KOG4532|consensus | 344 | 99.17 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.14 | |
| KOG4190|consensus | 1034 | 99.14 | ||
| KOG4714|consensus | 319 | 99.13 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.13 | |
| KOG2041|consensus | 1189 | 99.12 | ||
| KOG3914|consensus | 390 | 99.12 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.11 | |
| KOG4190|consensus | 1034 | 99.1 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.08 | |
| KOG4714|consensus | 319 | 99.08 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.07 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.07 | |
| KOG0309|consensus | 1081 | 99.06 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.05 | |
| KOG0882|consensus | 558 | 99.04 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.03 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.03 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.03 | |
| KOG2695|consensus | 425 | 99.02 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.99 | |
| KOG2314|consensus | 698 | 98.98 | ||
| KOG1275|consensus | 1118 | 98.98 | ||
| KOG1912|consensus | 1062 | 98.96 | ||
| KOG1832|consensus | 1516 | 98.96 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.95 | |
| KOG1645|consensus | 463 | 98.94 | ||
| KOG2041|consensus | 1189 | 98.9 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.87 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.84 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.83 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.82 | |
| KOG2066|consensus | 846 | 98.81 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.79 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.73 | |
| KOG2066|consensus | 846 | 98.73 | ||
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.7 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.7 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.69 | |
| KOG2314|consensus | 698 | 98.68 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.67 | |
| KOG1275|consensus | 1118 | 98.67 | ||
| KOG1334|consensus | 559 | 98.67 | ||
| KOG1008|consensus | 783 | 98.65 | ||
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.65 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.64 | |
| KOG1920|consensus | 1265 | 98.56 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.54 | |
| KOG1912|consensus | 1062 | 98.51 | ||
| KOG0882|consensus | 558 | 98.51 | ||
| KOG2114|consensus | 933 | 98.48 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.46 | |
| KOG3617|consensus | 1416 | 98.46 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.45 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.44 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.42 | |
| KOG4640|consensus | 665 | 98.41 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.37 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.35 | |
| KOG1832|consensus | 1516 | 98.33 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.31 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.3 | |
| KOG2114|consensus | 933 | 98.28 | ||
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.27 | |
| KOG1645|consensus | 463 | 98.26 | ||
| KOG3621|consensus | 726 | 98.25 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.23 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.21 | |
| KOG1008|consensus | 783 | 98.19 | ||
| KOG4649|consensus | 354 | 98.17 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.13 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.12 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.11 | |
| KOG3621|consensus | 726 | 98.11 | ||
| KOG3617|consensus | 1416 | 98.11 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.1 | |
| KOG4640|consensus | 665 | 98.09 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.09 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.06 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.05 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.0 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.99 | |
| KOG2395|consensus | 644 | 97.96 | ||
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.95 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.93 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.89 | |
| KOG4649|consensus | 354 | 97.85 | ||
| KOG2079|consensus | 1206 | 97.85 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.83 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.8 | |
| KOG2444|consensus | 238 | 97.8 | ||
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.74 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.7 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.67 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.65 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.63 | |
| KOG2079|consensus | 1206 | 97.61 | ||
| KOG1920|consensus | 1265 | 97.56 | ||
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.55 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.54 | |
| KOG1916|consensus | 1283 | 97.52 | ||
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.32 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.29 | |
| KOG2395|consensus | 644 | 97.24 | ||
| KOG4499|consensus | 310 | 97.22 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 97.15 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 97.15 | |
| KOG2444|consensus | 238 | 97.09 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.05 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.01 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.98 | |
| KOG2280|consensus | 829 | 96.97 | ||
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.9 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.86 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.84 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.79 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 96.73 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 96.72 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 96.71 | |
| KOG4441|consensus | 571 | 96.54 | ||
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.5 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.47 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.47 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.46 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.43 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.43 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.42 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.4 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.39 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 96.39 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 96.35 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 96.33 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.29 | |
| KOG3630|consensus | 1405 | 96.28 | ||
| KOG2377|consensus | 657 | 96.27 | ||
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.12 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.97 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.93 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.9 | |
| KOG4441|consensus | 571 | 95.86 | ||
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.84 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.83 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.7 | |
| KOG1897|consensus | 1096 | 95.69 | ||
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 95.64 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.64 | |
| KOG2377|consensus | 657 | 95.6 | ||
| KOG1900|consensus | 1311 | 95.54 | ||
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.46 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.44 | |
| KOG4460|consensus | 741 | 95.29 | ||
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 95.29 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.29 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.28 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.16 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 95.11 | |
| KOG2247|consensus | 615 | 94.97 | ||
| KOG3630|consensus | 1405 | 94.79 | ||
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.71 | |
| KOG1916|consensus | 1283 | 94.63 | ||
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.61 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.37 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.25 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.2 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.15 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 94.05 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.49 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 93.36 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.34 | |
| KOG4499|consensus | 310 | 93.32 | ||
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.31 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 93.25 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 93.21 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 92.8 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 92.64 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 92.5 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 92.5 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 92.41 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 92.25 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 92.04 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 91.96 | |
| KOG1983|consensus | 993 | 91.93 | ||
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 91.8 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 91.37 | |
| KOG1900|consensus | 1311 | 91.36 | ||
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 91.32 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 90.95 | |
| KOG3616|consensus | 1636 | 90.91 | ||
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 90.71 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 90.29 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 90.09 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 89.33 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 89.1 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 88.88 | |
| KOG1898|consensus | 1205 | 87.98 | ||
| PRK13684 | 334 | Ycf48-like protein; Provisional | 87.97 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 87.77 | |
| KOG1897|consensus | 1096 | 87.59 | ||
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 87.41 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 87.13 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 87.03 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 86.6 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 85.8 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 85.71 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 84.87 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 84.78 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 84.49 | |
| KOG1896|consensus | 1366 | 83.55 | ||
| KOG2247|consensus | 615 | 82.77 | ||
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 82.66 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 81.88 | |
| KOG3522|consensus | 925 | 81.18 | ||
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 80.65 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 80.05 |
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=253.82 Aligned_cols=218 Identities=20% Similarity=0.323 Sum_probs=196.3
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee-ee-c
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM-SV-N 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~-~~-~ 82 (239)
+.|.++|+||+.+..+..+.++|. ..|.|++|+| ++..|++|+.||+|++||.++++++- .+ +
T Consensus 134 sGD~TvR~WD~~TeTp~~t~KgH~--------------~WVlcvawsP-Dgk~iASG~~dg~I~lwdpktg~~~g~~l~g 198 (480)
T KOG0271|consen 134 SGDTTVRLWDLDTETPLFTCKGHK--------------NWVLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQQIGRALRG 198 (480)
T ss_pred CCCceEEeeccCCCCcceeecCCc--------------cEEEEEEECC-CcchhhccccCCeEEEecCCCCCcccccccC
Confidence 347899999999999999999999 9999999999 89999999999999999999988765 44 7
Q ss_pred CCCCEEEEEEec-----CCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 83 HGSPVESVLCLP-----SGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 83 ~~~~v~~~~~~~-----~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
|...|++++|.| ..+++++++ ||.++|||+. .+..+..+.+|..+|+|++|--+ .+|++|+.|++|++|+..
T Consensus 199 H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~ 276 (480)
T KOG0271|consen 199 HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-LGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRAL 276 (480)
T ss_pred cccceeEEeecccccCCCccceecccCCCCEEEEEcc-CceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEcc
Confidence 999999999986 567888888 8999999998 88899999999999999999644 589999999999999986
Q ss_pred -cceEeee----------------------------------------------------------ecceeEEEEEccCC
Q psy11036 157 -LKTVSSF----------------------------------------------------------TGGLDVCIWDMLGG 177 (239)
Q Consensus 157 -~~~~~~~----------------------------------------------------------~~~~~i~~~d~~~~ 177 (239)
+.+..++ +.+.++.+|+....
T Consensus 277 dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~ 356 (480)
T KOG0271|consen 277 DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS 356 (480)
T ss_pred chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc
Confidence 4433333 23455999999988
Q ss_pred CEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 178 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 178 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
.+++..+.+|..-|..+.||||++++|++|.|+.|++||.++|+.+.++. |-++|+.++|+.
T Consensus 357 kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 357 KKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA 419 (480)
T ss_pred ccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc
Confidence 89999999999999999999999999999999999999999999999999 999999999973
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=250.87 Aligned_cols=201 Identities=24% Similarity=0.393 Sum_probs=189.2
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
+.+.||++++|++++..++..+.+|. ..|..++|+| +|++|+|++.|.+-++||++++......
T Consensus 236 t~s~Dgtvklw~~~~e~~l~~l~gH~--------------~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QE 300 (459)
T KOG0272|consen 236 TASADGTVKLWKLSQETPLQDLEGHL--------------ARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQE 300 (459)
T ss_pred eeccCCceeeeccCCCcchhhhhcch--------------hhheeeeecC-CCceeeecccccchhhcccccchhhHhhc
Confidence 45679999999999999999999999 9999999999 8999999999999999999999887766
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceE
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTV 160 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 160 (239)
+|...|.+++|.|+|.++++|+ |..-+|||++ ++..+..+.+|..+|.+++|+|+|..||+|+.|++++|||++
T Consensus 301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR-tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR---- 375 (459)
T KOG0272|consen 301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR-TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR---- 375 (459)
T ss_pred ccccccceeEecCCCceeeccCccchhheeecc-cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeec----
Confidence 7999999999999999999999 8889999999 899999999999999999999999999999999999999999
Q ss_pred eeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEec
Q psy11036 161 SSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 161 ~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s 238 (239)
....+..+.+|..-|+.++|+| .|.+|+|+|.|++++||...++.+++++. |++.|.+++++
T Consensus 376 ----------------~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis 439 (459)
T KOG0272|consen 376 ----------------MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS 439 (459)
T ss_pred ----------------ccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec
Confidence 4455777799999999999999 78999999999999999999999999998 99999999987
Q ss_pred C
Q psy11036 239 M 239 (239)
Q Consensus 239 p 239 (239)
|
T Consensus 440 ~ 440 (459)
T KOG0272|consen 440 P 440 (459)
T ss_pred c
Confidence 6
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=246.81 Aligned_cols=198 Identities=23% Similarity=0.344 Sum_probs=186.6
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCceeee-cCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV-SSDIVISGSYDKTVNVYDTRSPDPVMSV-NHG 84 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~ 84 (239)
+|.++||+..+...+++|.+|. +.|.++.|+|. ++..+++|+.||++++|++.+..++..+ +|.
T Consensus 196 sG~~kvW~~~~~~~~~~l~gH~--------------~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~ 261 (459)
T KOG0272|consen 196 SGLVKVWSVPQCNLLQTLRGHT--------------SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL 261 (459)
T ss_pred CCceeEeecCCcceeEEEeccc--------------cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch
Confidence 5999999999999999999999 99999999996 3679999999999999999998888888 799
Q ss_pred CCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeee
Q psy11036 85 SPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSF 163 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 163 (239)
..|..++|+|+|++|++++ |.+-++||++ ++..+....+|...|.+++|++||..+++|+.|..-+|||++
T Consensus 262 ~RVs~VafHPsG~~L~TasfD~tWRlWD~~-tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR------- 333 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTASFDSTWRLWDLE-TKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR------- 333 (459)
T ss_pred hhheeeeecCCCceeeecccccchhhcccc-cchhhHhhcccccccceeEecCCCceeeccCccchhheeecc-------
Confidence 9999999999999999999 9999999999 777777788999999999999999999999999999999998
Q ss_pred ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 164 TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 164 ~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
++.++..+.+|..+|.++.|+|+|..|||||.|++++|||++..+.+..++ |.+-|+.+.|+|
T Consensus 334 -------------tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 334 -------------TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred -------------cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc
Confidence 677788889999999999999999999999999999999999999999998 888999999987
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=222.16 Aligned_cols=200 Identities=20% Similarity=0.296 Sum_probs=182.4
Q ss_pred CCCCCCEEEEeeCCC-----cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc
Q psy11036 3 HDLPILIVALWDIPS-----EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP 77 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~ 77 (239)
+.++|..+.+|++.. |.+++.+.+|. ..|..+..++ ++++.++++.|+++++||+.+++.
T Consensus 33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs--------------H~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~ 97 (315)
T KOG0279|consen 33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHS--------------HFVSDVVLSS-DGNFALSASWDGTLRLWDLATGES 97 (315)
T ss_pred EcccceEEEEEEeccCccccCceeeeeeccc--------------eEecceEEcc-CCceEEeccccceEEEEEecCCcE
Confidence 557899999998753 67788999998 8899999999 899999999999999999999998
Q ss_pred eeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEecc--CCceEEEEEcCC--CCEEEEEecCCeEE
Q psy11036 78 VMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCH--HKTVTSLCLASG--GKRLISASLDHHAK 151 (239)
Q Consensus 78 ~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~--~~~i~~i~~~~~--~~~l~~~~~d~~i~ 151 (239)
.+.| +|...|.+++|+|+.+.+++|+ |.+|++|+.. +....++..+ .+-|.+++|+|+ ..+|++++.|++|+
T Consensus 98 t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~--g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvK 175 (315)
T KOG0279|consen 98 TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL--GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVK 175 (315)
T ss_pred EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec--ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEE
Confidence 8888 8999999999999999999999 9999999996 4455555443 789999999997 67999999999999
Q ss_pred EEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCC
Q psy11036 152 IYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSP 231 (239)
Q Consensus 152 i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~ 231 (239)
+||++ +.+....+.+|++.++.+++||||.+.++|+.||.+.+||+..++.+.++.+...
T Consensus 176 vWnl~--------------------~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~ 235 (315)
T KOG0279|consen 176 VWNLR--------------------NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDI 235 (315)
T ss_pred EEccC--------------------CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCe
Confidence 99998 5667777889999999999999999999999999999999999999999999999
Q ss_pred eeeeEecC
Q psy11036 232 VLSIDVSM 239 (239)
Q Consensus 232 v~~~~~sp 239 (239)
|++++|+|
T Consensus 236 v~sl~fsp 243 (315)
T KOG0279|consen 236 VNSLCFSP 243 (315)
T ss_pred EeeEEecC
Confidence 99999998
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=230.21 Aligned_cols=202 Identities=22% Similarity=0.351 Sum_probs=186.0
Q ss_pred CCCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 2 SHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 2 s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
.+.+.||.|+|||+..++++..+.+|+ .+|+|+.|- +..++++|+.|++|++|+...|.....+
T Consensus 221 as~skDg~vrIWd~~~~~~~~~lsgHT--------------~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~l 284 (480)
T KOG0271|consen 221 ASSSKDGSVRIWDTKLGTCVRTLSGHT--------------ASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCREL 284 (480)
T ss_pred ecccCCCCEEEEEccCceEEEEeccCc--------------cceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhh
Confidence 456779999999999999999999999 999999996 4679999999999999999999988888
Q ss_pred -cCCCCEEEEEEe-----------cCCc-------------------------EEEEeC-CCcEEEEEccCCCeEEEEEe
Q psy11036 82 -NHGSPVESVLCL-----------PSGG-------------------------IFVTGG-GLDVCIWDMLGGGKLLHKFT 123 (239)
Q Consensus 82 -~~~~~v~~~~~~-----------~~~~-------------------------~l~~~~-~~~i~~~d~~~~~~~~~~~~ 123 (239)
+|...|+.++.+ |.+. .+++++ |.++.+|+.....+++.++.
T Consensus 285 kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt 364 (480)
T KOG0271|consen 285 KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT 364 (480)
T ss_pred cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh
Confidence 788889888776 3233 489998 59999999987888999999
Q ss_pred ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeE
Q psy11036 124 CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 203 (239)
Q Consensus 124 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 203 (239)
+|...|..+.|+||++++|+++.|..|++||.+ +++.+..+++|-.+|..++|+.|.++|
T Consensus 365 gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~--------------------tGk~lasfRGHv~~VYqvawsaDsRLl 424 (480)
T KOG0271|consen 365 GHQALVNHVSFSPDGRYIASASFDKSVKLWDGR--------------------TGKFLASFRGHVAAVYQVAWSADSRLL 424 (480)
T ss_pred chhhheeeEEECCCccEEEEeecccceeeeeCC--------------------CcchhhhhhhccceeEEEEeccCccEE
Confidence 999999999999999999999999999999988 678888889999999999999999999
Q ss_pred EEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 204 ISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 204 ~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
++||.|.++++||+++.+....++ |...|.+++|+|
T Consensus 425 VS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp 461 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP 461 (480)
T ss_pred EEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecC
Confidence 999999999999999999999999 999999999998
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=238.96 Aligned_cols=179 Identities=25% Similarity=0.403 Sum_probs=170.7
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
+.|++||+|.+++...+-.+++|. .+|..+.|+| .|.+++|++.|++.++|.....++.+.+ +|
T Consensus 470 SED~svRLWsl~t~s~~V~y~GH~--------------~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifagh 534 (707)
T KOG0263|consen 470 SEDSSVRLWSLDTWSCLVIYKGHL--------------APVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAGH 534 (707)
T ss_pred cCCcceeeeecccceeEEEecCCC--------------cceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhccc
Confidence 578999999999999999999999 9999999999 7999999999999999999999998888 79
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEee
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSS 162 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 162 (239)
-+.|.|+.|+|+..++++|+ |.++++||+. ++..++.|.+|.++|.+++|+|+|++|++|+.|+.|++||+.
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~-~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~------ 607 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVS-TGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA------ 607 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcC-CCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC------
Confidence 99999999999999999999 8999999999 899999999999999999999999999999999999999998
Q ss_pred eecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 163 FTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 163 ~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
.+.++..+.+|++.|.++.||.+|..||+|+.|.+|++||+..
T Consensus 608 --------------~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 608 --------------NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred --------------CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 5677778899999999999999999999999999999999854
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=238.94 Aligned_cols=175 Identities=24% Similarity=0.342 Sum_probs=166.3
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
++|..+.|+| +.++|++++.|+++|+|.+.+...+..+ +|..||..+.|+|.|-++++++ |++-++|... ..++++
T Consensus 452 GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d-~~~PlR 529 (707)
T KOG0263|consen 452 GPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD-HNKPLR 529 (707)
T ss_pred Cceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc-cCCchh
Confidence 9999999999 8999999999999999999999988877 7999999999999999999999 8999999998 788999
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG 200 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~ 200 (239)
.+.+|.+.|.|+.|+|++.++++|+.|.+|++||+. .+..++.+.+|.++|.+++|||+|
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~--------------------~G~~VRiF~GH~~~V~al~~Sp~G 589 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS--------------------TGNSVRIFTGHKGPVTALAFSPCG 589 (707)
T ss_pred hhcccccccceEEECCcccccccCCCCceEEEEEcC--------------------CCcEEEEecCCCCceEEEEEcCCC
Confidence 999999999999999999999999999999999988 567777889999999999999999
Q ss_pred CeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 201 KRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 201 ~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
++|++|+.||.|.+||+.+++++..+. |.+.|.++.||+
T Consensus 590 r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~ 629 (707)
T KOG0263|consen 590 RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR 629 (707)
T ss_pred ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec
Confidence 999999999999999999999999887 888999999984
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=216.92 Aligned_cols=217 Identities=20% Similarity=0.318 Sum_probs=196.3
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC-CCceeee-c
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS-PDPVMSV-N 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~-~ 82 (239)
+.|++|++||..+++..+.+++|. +.+.+++|+. .+.++++++.|-.+++||..+ .++++.+ +
T Consensus 127 s~d~tikv~D~~tg~~e~~LrGHt--------------~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g 191 (406)
T KOG0295|consen 127 SEDATIKVFDTETGELERSLRGHT--------------DSVFDISFDA-SGKYLATCSSDLSAKLWDFDTFFRCIKSLIG 191 (406)
T ss_pred cCCceEEEEEccchhhhhhhhccc--------------cceeEEEEec-CccEEEecCCccchhheeHHHHHHHHHHhcC
Confidence 568999999999999999999999 8899999999 799999999999999999986 3445544 7
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceE
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTV 160 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~ 160 (239)
|...|.+++|-|.|.++++++ |.+|+.|++. ++..+.++.+|..-|..++.+.||..+++++.|.++++|-+. .++.
T Consensus 192 h~h~vS~V~f~P~gd~ilS~srD~tik~We~~-tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k 270 (406)
T KOG0295|consen 192 HEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK 270 (406)
T ss_pred cccceeeEEEEecCCeeeecccccceeEEecc-cceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh
Confidence 999999999999999999999 8999999999 899999999999999999999999999999999999999887 4222
Q ss_pred eee-------------------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeE
Q psy11036 161 SSF-------------------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 203 (239)
Q Consensus 161 ~~~-------------------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 203 (239)
..+ +-+..|++||+.+ +.++.++.+|...|..++|+|.|+||
T Consensus 271 ~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gkyi 349 (406)
T KOG0295|consen 271 AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGKYI 349 (406)
T ss_pred hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEEEecccceeeeeEEcCCCeEE
Confidence 211 1234499999988 79999999999999999999999999
Q ss_pred EEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEec
Q psy11036 204 ISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 204 ~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s 238 (239)
+++.+|+++++||+++++++.+++ |+.-+++++|+
T Consensus 350 ~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh 385 (406)
T KOG0295|consen 350 LSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH 385 (406)
T ss_pred EEEecCCcEEEEEeccceeeeccCCCcceeEEEecC
Confidence 999999999999999999999998 88899999885
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=206.64 Aligned_cols=185 Identities=24% Similarity=0.348 Sum_probs=160.6
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N 82 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~ 82 (239)
.+.|+.+++||+.+++..+.|.+|. ..|.+++|++ +.+.+++|+.|.++++||+... +..++ .
T Consensus 81 ~swD~~lrlWDl~~g~~t~~f~GH~--------------~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~ 144 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTRRFVGHT--------------KDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHE 144 (315)
T ss_pred ccccceEEEEEecCCcEEEEEEecC--------------CceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEec
Confidence 3578999999999999999999999 9999999999 8999999999999999998755 44444 3
Q ss_pred --CCCCEEEEEEecC--CcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEccc
Q psy11036 83 --HGSPVESVLCLPS--GGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTL 157 (239)
Q Consensus 83 --~~~~v~~~~~~~~--~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 157 (239)
+.+.|.|++|+|+ ..++++++ |++|++||++ +.+....+.+|++.++.++++|||...++|+.||.+.+||++
T Consensus 145 ~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~-~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~- 222 (315)
T KOG0279|consen 145 DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR-NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN- 222 (315)
T ss_pred CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEcc-
Confidence 3788999999997 67888888 8999999999 888888999999999999999999999999999999999998
Q ss_pred ceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 158 KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 158 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.++.+..+ +|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+.
T Consensus 223 -------------------~~k~lysl-~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 223 -------------------EGKNLYSL-EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELK 271 (315)
T ss_pred -------------------CCceeEec-cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcc
Confidence 33333333 568899999999987666554 55669999999998888776
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=198.85 Aligned_cols=216 Identities=24% Similarity=0.337 Sum_probs=182.7
Q ss_pred CCEEEEeeCCCcc--eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 7 ILIVALWDIPSEA--QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 7 dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
...||+||++++. ++.+|.+|. ..|+++.|.. +++.+++|++||+++|||++...+.+.+.+.
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~e~h~--------------kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~ 124 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATFEGHT--------------KNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN 124 (311)
T ss_pred CCeeEEEEccCCCCCceeEEeccC--------------CceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhccCC
Confidence 3689999998764 688999999 9999999999 8999999999999999999998888888999
Q ss_pred CCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEccc-c----
Q psy11036 85 SPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTL-K---- 158 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~-~---- 158 (239)
.+|+++..+|+...|+++. +|.|++||+.+..-....+.....+|.++...|||..++.+...|..++|++-. .
T Consensus 125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc
Confidence 9999999999988888888 799999999833233333445567899999999999999999999999999851 1
Q ss_pred --eEeee----------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEE
Q psy11036 159 --TVSSF----------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 214 (239)
Q Consensus 159 --~~~~~----------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~i 214 (239)
.+..+ +.+..+++|+..+-.+....+.+|+..+...+||.||+||+||+.|+.+++
T Consensus 205 l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 205 LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARL 284 (311)
T ss_pred ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceee
Confidence 11111 345569999988755777788999999999999999999999999999999
Q ss_pred EEccCCeeeEEec-CCCCeeeeEe
Q psy11036 215 YEMVNFSPVHTLD-YPSPVLSIDV 237 (239)
Q Consensus 215 wd~~~~~~~~~~~-~~~~v~~~~~ 237 (239)
|++..++.++.+. |..+..+++.
T Consensus 285 W~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 285 WDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred cccccCceeeecCCcccccEEEEe
Confidence 9999999999888 6666666664
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=199.49 Aligned_cols=218 Identities=20% Similarity=0.266 Sum_probs=184.8
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC--ceee
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD--PVMS 80 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~--~~~~ 80 (239)
+.|-|-+||+|...+|.+.++++-.. +.|..+...| ++..|++++. ..||+||++++. ++.+
T Consensus 15 sA~YDhTIRfWqa~tG~C~rTiqh~d--------------sqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t 78 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALTGICSRTIQHPD--------------SQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVAT 78 (311)
T ss_pred eccCcceeeeeehhcCeEEEEEecCc--------------cceeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeE
Confidence 45788999999999999999999887 8999999999 7888888776 679999998775 4667
Q ss_pred e-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-c
Q psy11036 81 V-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-L 157 (239)
Q Consensus 81 ~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~ 157 (239)
+ .|...|+++.|..+|+++++|+ ||+++|||++ ..... +...|..+|+++..+|+...|++|..+|.|++||+. .
T Consensus 79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR-~~~~q-R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR-SLSCQ-RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred EeccCCceEEEEEeecCeEEEecCCCceEEEEecc-Ccccc-hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 7 6889999999999999999999 7999999999 43333 344578999999999999999999999999999997 3
Q ss_pred ceEeee-----------------------ecceeEEEEEccCC-----CEEEEEEecccCcEEEEEEccCCCeEEEEcCC
Q psy11036 158 KTVSSF-----------------------TGGLDVCIWDMLGG-----GKLLHKFTCHHKTVTSLCLASGGKRLISASLD 209 (239)
Q Consensus 158 ~~~~~~-----------------------~~~~~i~~~d~~~~-----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d 209 (239)
.+...+ ...+..++|++-+. -+++..++.|++-+..+.+|||+++||++|.|
T Consensus 157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD 236 (311)
T ss_pred ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence 232222 23556899998653 46778899999999999999999999999999
Q ss_pred ceEEEEEccCC-eeeEEec-CCCCeeeeEec
Q psy11036 210 HHAKIYEMVNF-SPVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 210 ~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~s 238 (239)
.+++||+.++. +....++ +...+...+||
T Consensus 237 ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 237 KTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred ceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 99999999887 4445555 77789999987
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=217.57 Aligned_cols=216 Identities=19% Similarity=0.249 Sum_probs=191.4
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-C
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-H 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~ 83 (239)
..+|.+++|+. +|.++.+|..|+ ++|.++.|+. .+++|++++-|+++.+||..+++....+. |
T Consensus 254 ~~~G~~riw~~-~G~l~~tl~~Hk--------------gPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 254 SEDGEARIWNK-DGNLISTLGQHK--------------GPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred ecCcEEEEEec-CchhhhhhhccC--------------CceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeeeec
Confidence 35799999997 677889999999 9999999999 89999999999999999999999888884 6
Q ss_pred CCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEee
Q psy11036 84 GSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSS 162 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~ 162 (239)
..+...+.|-.+..+..++.|+.|+++.+. ...+..++.+|.++|.++.|+|.|.+|++++.|++++||... ..+...
T Consensus 318 s~~~lDVdW~~~~~F~ts~td~~i~V~kv~-~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~ 396 (524)
T KOG0273|consen 318 SAPALDVDWQSNDEFATSSTDGCIHVCKVG-EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHD 396 (524)
T ss_pred cCCccceEEecCceEeecCCCceEEEEEec-CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhh
Confidence 666688999877666655569999999998 788999999999999999999999999999999999999965 332222
Q ss_pred e-------------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCce
Q psy11036 163 F-------------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHH 211 (239)
Q Consensus 163 ~-------------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~ 211 (239)
+ .-+..+++||+.. +.+++.+..|..+|.+++|+|+|+++|+|+.||.
T Consensus 397 l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 397 LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC 475 (524)
T ss_pred hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeeccCCCceEEEEecCCCcEEEecCCCCe
Confidence 2 1244499999987 8899999999999999999999999999999999
Q ss_pred EEEEEccCCeeeEEecCCCCeeeeEec
Q psy11036 212 AKIYEMVNFSPVHTLDYPSPVLSIDVS 238 (239)
Q Consensus 212 i~iwd~~~~~~~~~~~~~~~v~~~~~s 238 (239)
|.||+.++++.++.+...+.|..++|+
T Consensus 476 V~iws~~~~~l~~s~~~~~~Ifel~Wn 502 (524)
T KOG0273|consen 476 VHIWSTKTGKLVKSYQGTGGIFELCWN 502 (524)
T ss_pred eEeccccchheeEeecCCCeEEEEEEc
Confidence 999999999999999999999999997
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=199.79 Aligned_cols=199 Identities=20% Similarity=0.362 Sum_probs=180.1
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC--C----c
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP--D----P 77 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~--~----~ 77 (239)
.+.||.+.|||.-+...++.++... ..|..++|+| .++++++|+.|....||++.+. + .
T Consensus 73 aSqDGklIvWDs~TtnK~haipl~s--------------~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v 137 (343)
T KOG0286|consen 73 ASQDGKLIVWDSFTTNKVHAIPLPS--------------SWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRV 137 (343)
T ss_pred eccCCeEEEEEcccccceeEEecCc--------------eeEEEEEECC-CCCeEEecCcCceeEEEeccccccccccee
Confidence 3578999999999888888888888 9999999999 8999999999999999999855 2 2
Q ss_pred eeee-cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEEc
Q psy11036 78 VMSV-NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEM 155 (239)
Q Consensus 78 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~ 155 (239)
.+.+ +|.+-+.|+.|-+++.++...+|.+..+||++ +++.+..+.+|.+.|.+++++| +++.+++|+.|+..++||+
T Consensus 138 ~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie-~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIE-TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred eeeecCccceeEEEEEcCCCceEecCCCceEEEEEcc-cceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence 2334 69999999999997777766669999999999 9999999999999999999999 9999999999999999999
Q ss_pred ccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCC---CCe
Q psy11036 156 TLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYP---SPV 232 (239)
Q Consensus 156 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---~~v 232 (239)
+ .+.+++.+.+|+..|.+++|.|+|.-+++||+|++.|+||++..+.+..+.++ .+|
T Consensus 217 R--------------------~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 217 R--------------------SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred c--------------------CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 9 56778888999999999999999999999999999999999999999988854 489
Q ss_pred eeeEec
Q psy11036 233 LSIDVS 238 (239)
Q Consensus 233 ~~~~~s 238 (239)
++++||
T Consensus 277 tSv~FS 282 (343)
T KOG0286|consen 277 TSVAFS 282 (343)
T ss_pred eeEEEc
Confidence 999997
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=216.96 Aligned_cols=217 Identities=22% Similarity=0.415 Sum_probs=194.2
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC-CeEEEEeCCCCCceeee-cC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD-KTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~v~vw~~~~~~~~~~~-~~ 83 (239)
+.|...+|++....+++.+.-.. .+|..++|+. .|+.|+.|+.. |.+.||+..+...+... +|
T Consensus 285 ssG~f~LyelP~f~lih~LSis~--------------~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH 349 (893)
T KOG0291|consen 285 SSGEFGLYELPDFNLIHSLSISD--------------QKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH 349 (893)
T ss_pred cCCeeEEEecCCceEEEEeeccc--------------ceeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeeecccc
Confidence 45788899999989998888877 8899999998 78999887754 89999999988777666 69
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEe
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVS 161 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~ 161 (239)
-..+++++++|||+++++|+ ||.|++||.. .+-.+.++..|...|+.+.|+..|+.+++.+.||+|+.||+. .+..+
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEecc-CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence 99999999999999999999 7999999999 888999999999999999999999999999999999999998 77777
Q ss_pred eeec------------------------ceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 162 SFTG------------------------GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 162 ~~~~------------------------~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
+++. ..+|.+|++++ ++.+..+.+|+++|.+++|+|++..|+++|.|.+||+||+
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT-GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT-GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec-CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEe
Confidence 7621 33499999988 8999999999999999999999999999999999999998
Q ss_pred cC-CeeeEEecCCCCeeeeEecC
Q psy11036 218 VN-FSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 218 ~~-~~~~~~~~~~~~v~~~~~sp 239 (239)
-. .....+++....+.+++|+|
T Consensus 508 f~s~~~vEtl~i~sdvl~vsfrP 530 (893)
T KOG0291|consen 508 FSSSGTVETLEIRSDVLAVSFRP 530 (893)
T ss_pred eccCceeeeEeeccceeEEEEcC
Confidence 54 45677788888999999987
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=218.52 Aligned_cols=221 Identities=19% Similarity=0.339 Sum_probs=188.9
Q ss_pred CCCCCCEEEEeeCCC-cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 3 HDLPILIVALWDIPS-EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
..|-|+.|+||++.. ++++++|.+|. .+|.+++|++ .+..+++++.|+.+++||+++|++...+
T Consensus 232 S~gmD~~vklW~vy~~~~~lrtf~gH~--------------k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f 296 (503)
T KOG0282|consen 232 SGGMDGLVKLWNVYDDRRCLRTFKGHR--------------KPVRDASFNN-CGTSFLSASFDRFLKLWDTETGQVLSRF 296 (503)
T ss_pred ecCCCceEEEEEEecCcceehhhhcch--------------hhhhhhhccc-cCCeeeeeecceeeeeeccccceEEEEE
Confidence 457899999999876 89999999999 9999999999 8999999999999999999999999999
Q ss_pred cCCCCEEEEEEecCC-cEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cc
Q psy11036 82 NHGSPVESVLCLPSG-GIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LK 158 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~ 158 (239)
.....++|+.|+|++ +.+++|+ |+.|+.||++ .++.++++..|-+.|..+.|-++|+.+++.+.|++++||+.+ .-
T Consensus 297 ~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR-s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v 375 (503)
T KOG0282|consen 297 HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR-SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV 375 (503)
T ss_pred ecCCCceeeecCCCCCcEEEEecCCCcEEEEecc-chHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc
Confidence 888999999999988 6666776 8999999999 888999999999999999999999999999999999999987 22
Q ss_pred eEeee-----------------------ecceeEEEEEccCC--CEEEEEEecccC--cEEEEEEccCCCeEEEEcCCce
Q psy11036 159 TVSSF-----------------------TGGLDVCIWDMLGG--GKLLHKFTCHHK--TVTSLCLASGGKRLISASLDHH 211 (239)
Q Consensus 159 ~~~~~-----------------------~~~~~i~~~d~~~~--~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~d~~ 211 (239)
.+... +-+..+.++.+... ......+++|.. --..+.|||||++|++|+.||.
T Consensus 376 ~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~ 455 (503)
T KOG0282|consen 376 PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK 455 (503)
T ss_pred cchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence 21111 12334666664432 223344666654 3467899999999999999999
Q ss_pred EEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 212 AKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 212 i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
+.+||.++-+.+..++ |.+++..+.|+|
T Consensus 456 v~~wdwkt~kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 456 VNFWDWKTTKLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred EEEeechhhhhhhccccCCcceEEEEecC
Confidence 9999999999999998 779999999998
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=201.66 Aligned_cols=208 Identities=20% Similarity=0.330 Sum_probs=186.5
Q ss_pred CCCCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee
Q psy11036 1 MSHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS 80 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 80 (239)
|.+.+.|++|.|||+.+|++..++.+|. ..|..+++++ -..++++++.|+.|+.||++..+.++.
T Consensus 166 f~tgs~DrtikIwDlatg~LkltltGhi--------------~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~nkvIR~ 230 (460)
T KOG0285|consen 166 FATGSADRTIKIWDLATGQLKLTLTGHI--------------ETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEYNKVIRH 230 (460)
T ss_pred EEecCCCceeEEEEcccCeEEEeecchh--------------heeeeeeecc-cCceEEEecCCCeeEEEechhhhhHHH
Confidence 5677899999999999999999999999 9999999999 788999999999999999999999888
Q ss_pred e-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-c
Q psy11036 81 V-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-L 157 (239)
Q Consensus 81 ~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~ 157 (239)
+ +|-..|.|++.+|.-..+++++ |..+++||++ +...+..+.+|..+|..+.+.|....+++|+.|++|++||++ +
T Consensus 231 YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR-tr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 231 YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR-TRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG 309 (460)
T ss_pred hccccceeEEEeccccceeEEecCCcceEEEeeec-ccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccC
Confidence 7 8999999999999999999999 8999999999 889999999999999999999988899999999999999999 6
Q ss_pred ceEeee---------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEE
Q psy11036 158 KTVSSF---------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 158 ~~~~~~---------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
+...++ .+..+++-|++.. +..+..+.+|..-|.+++...|+ ++++|++.|.+.+||
T Consensus 310 kt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 310 KTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred ceeEeeecccceeeEEecCCchhhhhccCCccceeccCCc-cchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 665554 2344588899876 66677789999999999987664 788999999999999
Q ss_pred ccCCeeeEEe
Q psy11036 217 MVNFSPVHTL 226 (239)
Q Consensus 217 ~~~~~~~~~~ 226 (239)
.++|-..+..
T Consensus 388 wksg~nyQ~~ 397 (460)
T KOG0285|consen 388 WKSGHNYQRG 397 (460)
T ss_pred cCcCcccccc
Confidence 9988665554
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=203.27 Aligned_cols=185 Identities=18% Similarity=0.306 Sum_probs=171.7
Q ss_pred ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCc
Q psy11036 19 AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGG 97 (239)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 97 (239)
+..+.+.+|. +.|.|+++.| .++.+++|+.|++++|||+.+++...++ +|...|..+++++...
T Consensus 142 Kl~rVi~gHl--------------gWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp 206 (460)
T KOG0285|consen 142 KLYRVISGHL--------------GWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP 206 (460)
T ss_pred eehhhhhhcc--------------ceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc
Confidence 3445667777 9999999999 8999999999999999999999999988 6999999999999999
Q ss_pred EEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccC
Q psy11036 98 IFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLG 176 (239)
Q Consensus 98 ~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~ 176 (239)
++++++ |+.|+.||++ ..+.++...+|-..|.+++.+|.-+.|++|+.|.++++||++
T Consensus 207 YlFs~gedk~VKCwDLe-~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR-------------------- 265 (460)
T KOG0285|consen 207 YLFSAGEDKQVKCWDLE-YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR-------------------- 265 (460)
T ss_pred eEEEecCCCeeEEEech-hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeec--------------------
Confidence 999999 7999999999 888899999999999999999999999999999999999999
Q ss_pred CCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 177 GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 177 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
....+..+.+|..+|..+.+.|-...+++||.|++|++||+..|+...++. |...+.+++.+|
T Consensus 266 tr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP 329 (460)
T KOG0285|consen 266 TRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP 329 (460)
T ss_pred ccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC
Confidence 577788889999999999999988889999999999999999999998887 777999999887
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=196.63 Aligned_cols=204 Identities=20% Similarity=0.323 Sum_probs=182.4
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecC
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 83 (239)
.|.|.+|+.||+++|+.++.+++|. +-|.++.-+..+..++.+++.|+++++||+++...++++..
T Consensus 108 ~gtDk~v~~wD~~tG~~~rk~k~h~--------------~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ 173 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETGKRIRKHKGHT--------------SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN 173 (338)
T ss_pred ecCCceEEEEecccceeeehhcccc--------------ceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc
Confidence 4789999999999999999999999 88999987766677889999999999999999999999988
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEe
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVS 161 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~ 161 (239)
+.+++++.|..++..+.+|+ |+.|++||++ .....+.+.+|..+|+.+..+|+|.++.+-+.|.++++||++ ...
T Consensus 174 kyqltAv~f~d~s~qv~sggIdn~ikvWd~r-~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p-- 250 (338)
T KOG0265|consen 174 KYQLTAVGFKDTSDQVISGGIDNDIKVWDLR-KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP-- 250 (338)
T ss_pred ceeEEEEEecccccceeeccccCceeeeccc-cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC--
Confidence 99999999999999999999 9999999999 888999999999999999999999999999999999999998 111
Q ss_pred eeecceeEEEEEccCCCEEEEEEecccC----cEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeE
Q psy11036 162 SFTGGLDVCIWDMLGGGKLLHKFTCHHK----TVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSID 236 (239)
Q Consensus 162 ~~~~~~~i~~~d~~~~~~~~~~~~~h~~----~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~ 236 (239)
...++..+.+|.. .....+|+|+++.+..|+.|..+++||......+..++ |.+.|++++
T Consensus 251 ---------------~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~ 315 (338)
T KOG0265|consen 251 ---------------SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVD 315 (338)
T ss_pred ---------------CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEee
Confidence 2334555555443 34567899999999999999999999999989999998 889999999
Q ss_pred ecC
Q psy11036 237 VSM 239 (239)
Q Consensus 237 ~sp 239 (239)
|+|
T Consensus 316 Fhp 318 (338)
T KOG0265|consen 316 FHP 318 (338)
T ss_pred ecC
Confidence 998
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=211.27 Aligned_cols=196 Identities=19% Similarity=0.265 Sum_probs=160.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-------ceeee-cCCCCEEEEEEecCC-cEEEEeC-CCcEEEEEc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD-------PVMSV-NHGSPVESVLCLPSG-GIFVTGG-GLDVCIWDM 112 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-------~~~~~-~~~~~v~~~~~~~~~-~~l~~~~-~~~i~~~d~ 112 (239)
+.|.+++|+|.++++|++|+.|++|++||+.++. ++..+ +|...|.+++|+|++ .+|++++ |+.|++||+
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 9999999999667899999999999999997652 34455 689999999999975 6888877 899999999
Q ss_pred cCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee----------------------ec----
Q psy11036 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF----------------------TG---- 165 (239)
Q Consensus 113 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~----------------------~~---- 165 (239)
+ .++.+..+..|...|.+++|+|+|.+|++++.|+.|++||++ ++.+..+ .|
T Consensus 156 ~-tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s 234 (493)
T PTZ00421 156 E-RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKS 234 (493)
T ss_pred C-CCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCC
Confidence 8 778888899999999999999999999999999999999998 5444332 11
Q ss_pred -ceeEEEEEccCCCEEEEEEeccc-CcEEEEEEccCCCeEEEEc-CCceEEEEEccCCeeeEEec--CCCCeeeeEecC
Q psy11036 166 -GLDVCIWDMLGGGKLLHKFTCHH-KTVTSLCLASGGKRLISAS-LDHHAKIYEMVNFSPVHTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 166 -~~~i~~~d~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp 239 (239)
++.+++||+++...++.....+. ..+....|++++++|++++ .|+.|++||+.+++++.... ...++..++|.|
T Consensus 235 ~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 235 QQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred CCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 34699999987666665544333 4556667899999998887 59999999999999877665 455788888876
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=193.09 Aligned_cols=178 Identities=25% Similarity=0.426 Sum_probs=163.1
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N 82 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~ 82 (239)
.+.|.+..+||+++++.+..|.+|. +.|.++.++|.+++.+++|+-|+..++||++.+.++++| +
T Consensus 162 ~SGD~TCalWDie~g~~~~~f~GH~--------------gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g 227 (343)
T KOG0286|consen 162 GSGDMTCALWDIETGQQTQVFHGHT--------------GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG 227 (343)
T ss_pred cCCCceEEEEEcccceEEEEecCCc--------------ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc
Confidence 4568999999999999999999999 999999999988999999999999999999999999999 7
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEec--cCCceEEEEEcCCCCEEEEEecCCeEEEEEcccce
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKT 159 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~ 159 (239)
|+..|++++|.|+|.-+++|+ |++.++||++ ..+.+..+.. -..+|++++|+..|++|.+|..|.++.+||.-
T Consensus 228 hesDINsv~ffP~G~afatGSDD~tcRlyDlR-aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtl--- 303 (343)
T KOG0286|consen 228 HESDINSVRFFPSGDAFATGSDDATCRLYDLR-ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTL--- 303 (343)
T ss_pred cccccceEEEccCCCeeeecCCCceeEEEeec-CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecc---
Confidence 999999999999999999999 6999999999 5555555542 34589999999999999999999999999976
Q ss_pred EeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEE
Q psy11036 160 VSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 160 ~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
.++.+..+.+|...|+++..+|||.-++|||.|..+|||.
T Consensus 304 -----------------k~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 304 -----------------KGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -----------------ccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 5677777899999999999999999999999999999994
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=211.58 Aligned_cols=199 Identities=23% Similarity=0.323 Sum_probs=177.0
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
..+|.|++|+.. ...++.+.+|.. ..|++++|+| +...+++++.||+|+|||....++...+ +|
T Consensus 157 D~gG~iKyWqpn-mnnVk~~~ahh~-------------eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GH 221 (464)
T KOG0284|consen 157 DKGGMIKYWQPN-MNNVKIIQAHHA-------------EAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGH 221 (464)
T ss_pred CCCceEEecccc-hhhhHHhhHhhh-------------hhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccC
Confidence 357999999974 444555655431 7899999999 8889999999999999999988888777 79
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEee
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSS 162 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 162 (239)
.-.|.++.|+|....+++++ |..|++||.+ ++..+.++..|...|..+.|+|++++|++++.|..++++|++
T Consensus 222 gwdVksvdWHP~kgLiasgskDnlVKlWDpr-Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR------ 294 (464)
T KOG0284|consen 222 GWDVKSVDWHPTKGLIASGSKDNLVKLWDPR-SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR------ 294 (464)
T ss_pred CCCcceeccCCccceeEEccCCceeEeecCC-CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehh------
Confidence 99999999999999999999 7999999999 899999999999999999999999999999999999999998
Q ss_pred eecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEcCCceEEEEEccCCeeeEEec--CCCCeeeeEecC
Q psy11036 163 FTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMVNFSPVHTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 163 ~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp 239 (239)
..+.+..+++|...|+++.|+| ...+|.+|+.||.|..|.+...+++..+. |...|++++|+|
T Consensus 295 --------------~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP 360 (464)
T KOG0284|consen 295 --------------TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP 360 (464)
T ss_pred --------------HhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc
Confidence 3444555689999999999999 56788899999999999999888888887 888999999998
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=215.59 Aligned_cols=217 Identities=24% Similarity=0.411 Sum_probs=187.6
Q ss_pred CCCEEEEeeCCCcc--eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeC-CCCCceeee-
Q psy11036 6 PILIVALWDIPSEA--QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDT-RSPDPVMSV- 81 (239)
Q Consensus 6 ~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~-~~~~~~~~~- 81 (239)
.++.+++|+..+.+ ..+.+.+|. ..|.+++|+| ++.++++++.|+++++||+ ..+..++++
T Consensus 179 ~~~~i~~~~~~~~~~~~~~~l~~h~--------------~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~ 243 (456)
T KOG0266|consen 179 SDGLIRIWKLEGIKSNLLRELSGHT--------------RGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLK 243 (456)
T ss_pred CCCcEEEeecccccchhhccccccc--------------cceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEec
Confidence 57999999998777 777888888 9999999999 8999999999999999999 445777777
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cc-
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LK- 158 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~- 158 (239)
+|...|++++|+|+++.+++|+ |++|++||++ .++....+.+|.+.|++++|++++++|++++.|+.|++||+. +.
T Consensus 244 gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~-~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 244 GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR-TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred CCCCceEEEEecCCCCEEEEecCCCcEEEEecc-CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 7999999999999999999998 8999999999 799999999999999999999999999999999999999999 44
Q ss_pred -eEeee------------------------ecceeEEEEEccCCCEEEEEEecccCc---EEEEEEccCCCeEEEEcCCc
Q psy11036 159 -TVSSF------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKT---VTSLCLASGGKRLISASLDH 210 (239)
Q Consensus 159 -~~~~~------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~---v~~~~~s~~~~~l~s~s~d~ 210 (239)
++..+ ..+..+++||+.. ......+.+|... +.+...++.+.++++|+.|+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~ 401 (456)
T KOG0266|consen 323 LCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS-GKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDG 401 (456)
T ss_pred eeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC-CcceeeecccCCcceeEecccccCCCCeEEEEeCCc
Confidence 22222 2344699999987 6667777777764 44445677899999999999
Q ss_pred eEEEEEccCCeeeEEec-C-CCCeeeeEecC
Q psy11036 211 HAKIYEMVNFSPVHTLD-Y-PSPVLSIDVSM 239 (239)
Q Consensus 211 ~i~iwd~~~~~~~~~~~-~-~~~v~~~~~sp 239 (239)
.|++|++.++..+..+. | ...+..++|+|
T Consensus 402 ~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~ 432 (456)
T KOG0266|consen 402 SVYVWDSSSGGILQRLEGHSKAAVSDLSSHP 432 (456)
T ss_pred eEEEEeCCccchhhhhcCCCCCceeccccCC
Confidence 99999999999998888 5 57888888875
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=211.64 Aligned_cols=197 Identities=20% Similarity=0.252 Sum_probs=174.9
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c-C
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N-H 83 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~-~ 83 (239)
..|.+.+|+..+......+++|. .+|+++.|++ ++.++++|+.+|.|++|+..... +..+ . |
T Consensus 116 ~SGEFtLWNg~~fnFEtilQaHD--------------s~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh 179 (464)
T KOG0284|consen 116 QSGEFTLWNGTSFNFETILQAHD--------------SPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNN-VKIIQAHH 179 (464)
T ss_pred ccccEEEecCceeeHHHHhhhhc--------------ccceeEEEcc-CCCEEEEcCCCceEEecccchhh-hHHhhHhh
Confidence 34889999975554445567888 9999999999 89999999999999999986443 3333 3 5
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEee
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSS 162 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 162 (239)
...|++++|+|+...+++++ ||+|+|||.. ..+....+.+|.-.|.++.|+|....+++++.|+.|++||.+
T Consensus 180 ~eaIRdlafSpnDskF~t~SdDg~ikiWdf~-~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr------ 252 (464)
T KOG0284|consen 180 AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR-MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR------ 252 (464)
T ss_pred hhhhheeccCCCCceeEEecCCCeEEEEecc-CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC------
Confidence 59999999999999999998 7999999998 666667779999999999999999999999999999999998
Q ss_pred eecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 163 FTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 163 ~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
.++++.++.+|...|..+.|+|++++|+|+|.|..+++||+++.+.+++++ |...|+++.|+|
T Consensus 253 --------------Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP 316 (464)
T KOG0284|consen 253 --------------SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHP 316 (464)
T ss_pred --------------CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccc
Confidence 577777789999999999999999999999999999999999999999998 999999999998
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=208.85 Aligned_cols=220 Identities=21% Similarity=0.230 Sum_probs=170.8
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-------
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD------- 76 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~------- 76 (239)
.|.++.|++|+......+..+.+|. +.|.+++|+|.++++|++|+.|++|++||+.++.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~--------------~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~ 115 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHT--------------SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK 115 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCC--------------CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc
Confidence 3567889999987777888899998 9999999999558899999999999999997642
Q ss_pred -ceeee-cCCCCEEEEEEecCCcEE-EEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy11036 77 -PVMSV-NHGSPVESVLCLPSGGIF-VTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 152 (239)
Q Consensus 77 -~~~~~-~~~~~v~~~~~~~~~~~l-~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 152 (239)
++..+ .|...|.+++|+|++..+ ++++ |+.|++||++ .++....+. |...|.+++|+|+|.+|++++.|+.|+|
T Consensus 116 ~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~-tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrI 193 (568)
T PTZ00420 116 DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE-NEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHI 193 (568)
T ss_pred cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC-CCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEE
Confidence 22344 688999999999988765 5666 8999999998 666666665 6678999999999999999999999999
Q ss_pred EEcc-cceEeee-------------------------e-cc-----eeEEEEEccCCCEEEEEEec--ccCcEEEEEEcc
Q psy11036 153 YEMT-LKTVSSF-------------------------T-GG-----LDVCIWDMLGGGKLLHKFTC--HHKTVTSLCLAS 198 (239)
Q Consensus 153 ~d~~-~~~~~~~-------------------------~-~~-----~~i~~~d~~~~~~~~~~~~~--h~~~v~~~~~s~ 198 (239)
||++ ++.+.++ + |. ..+++||++....++..+.. +.+.+......+
T Consensus 194 wD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~ 273 (568)
T PTZ00420 194 IDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDES 273 (568)
T ss_pred EECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCC
Confidence 9998 4433322 1 11 24999999976666655433 333333344455
Q ss_pred CCCeEEEEcCCceEEEEEccCCee--eEEecCCCCeeeeEecC
Q psy11036 199 GGKRLISASLDHHAKIYEMVNFSP--VHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 199 ~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~sp 239 (239)
+|.++++|+.|+.|++|++..+.. +..+.+..+..+++|.|
T Consensus 274 tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~P 316 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLP 316 (568)
T ss_pred CCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcc
Confidence 689999999999999999977642 33344667889999987
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=211.36 Aligned_cols=215 Identities=20% Similarity=0.313 Sum_probs=193.4
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGS 85 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~ 85 (239)
.|.|.|||.++...++.+.... -+|++..|-+ ..+.+++|+.|..|+||+..+++.+..+ .|..
T Consensus 34 nG~V~IWnyetqtmVksfeV~~--------------~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D 98 (794)
T KOG0276|consen 34 NGDVQIWNYETQTMVKSFEVSE--------------VPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD 98 (794)
T ss_pred cCeeEEEecccceeeeeeeecc--------------cchhhheeee-ccceEEEecCCceEEEEecccceeeEEeecccc
Confidence 5999999999999999999988 9999999999 7999999999999999999999999999 6999
Q ss_pred CEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEEcc-cceEee
Q psy11036 86 PVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMT-LKTVSS 162 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~ 162 (239)
-|.+++.+|...++++++ |-.|++||.+..-...+++.+|..-|++++|+| |.+.+++++-|++|++|.+. ..+..+
T Consensus 99 yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT 178 (794)
T KOG0276|consen 99 YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT 178 (794)
T ss_pred ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee
Confidence 999999999999999999 589999999977788899999999999999999 55799999999999999997 554444
Q ss_pred e----------------------ec--ceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 163 F----------------------TG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 163 ~----------------------~~--~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
+ +| +..+++||.++ ..++.++.+|.+.|..+.|+|.=.+++|||.||++|||.-.
T Consensus 179 l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 179 LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred eeccccCcceEEeccCCCcceEEecCCCceEEEeecch-HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCc
Confidence 4 22 23399999987 88999999999999999999999999999999999999999
Q ss_pred CCeeeEEec-CCCCeeeeEe
Q psy11036 219 NFSPVHTLD-YPSPVLSIDV 237 (239)
Q Consensus 219 ~~~~~~~~~-~~~~v~~~~~ 237 (239)
+.+...++. .-..+++++-
T Consensus 258 Ty~lE~tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 258 TYKLEKTLNYGLERVWCIAA 277 (794)
T ss_pred ceehhhhhhcCCceEEEEee
Confidence 988888877 4456777663
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=203.05 Aligned_cols=216 Identities=29% Similarity=0.484 Sum_probs=187.3
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSP 86 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~ 86 (239)
-.+.||+..+....+++...+ ..+.++.|.. +|.+|++|...|.|+++|+.+...++.+ .|..+
T Consensus 48 ~rvqly~~~~~~~~k~~srFk--------------~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~ap 112 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFK--------------DVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAP 112 (487)
T ss_pred cEEEEEecchhhhhhhHHhhc--------------cceeEEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhccCc
Confidence 567888887777777776666 8899999999 8999999999999999997665555566 69999
Q ss_pred EEEEEEecCCcE-EEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCC-CCEEEEEecCCeEEEEEcc--cceEe
Q psy11036 87 VESVLCLPSGGI-FVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG-GKRLISASLDHHAKIYEMT--LKTVS 161 (239)
Q Consensus 87 v~~~~~~~~~~~-l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~--~~~~~ 161 (239)
+..+.|+|++.. +++|+ |+.+++||+. +......+.+|...|.+.+|+|. +..+++|+.||.|++||++ +..+.
T Consensus 113 v~~~~f~~~d~t~l~s~sDd~v~k~~d~s-~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDDKVVKYWDLS-TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred eeEEEecccCCeEEEecCCCceEEEEEcC-CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence 999999996655 55555 4788999998 55556688999999999999995 4588999999999999999 35555
Q ss_pred ee--------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCe
Q psy11036 162 SF--------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFS 221 (239)
Q Consensus 162 ~~--------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~ 221 (239)
++ .|+..+++||+.++++.+..+..|...|+|+++..++..|++++-|+.|++||+.+.+
T Consensus 192 elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K 271 (487)
T KOG0310|consen 192 ELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK 271 (487)
T ss_pred EecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE
Confidence 54 4677899999999899998888899999999999999999999999999999999999
Q ss_pred eeEEecCCCCeeeeEecC
Q psy11036 222 PVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 222 ~~~~~~~~~~v~~~~~sp 239 (239)
.+..+..+++|.+++.+|
T Consensus 272 vv~s~~~~~pvLsiavs~ 289 (487)
T KOG0310|consen 272 VVHSWKYPGPVLSIAVSP 289 (487)
T ss_pred EEEeeecccceeeEEecC
Confidence 999999999999999987
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=217.40 Aligned_cols=217 Identities=18% Similarity=0.297 Sum_probs=193.4
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGS 85 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~ 85 (239)
.|.|++||.+-+.++..|..|. ++|+.++|+| .+.++++|+.|-.|+||+..+.+++.++ +|-.
T Consensus 30 sG~IQlWDYRM~tli~rFdeHd--------------GpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~GHlD 94 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGTLIDRFDEHD--------------GPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD 94 (1202)
T ss_pred CceeeeehhhhhhHHhhhhccC--------------CccceeeecC-CCCeEEecCCccEEEEEecccceehhhhccccc
Confidence 5899999999999999999999 9999999999 7999999999999999999999999888 8999
Q ss_pred CEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEee--
Q psy11036 86 PVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSS-- 162 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-- 162 (239)
-|..+.|++.-.++++++ |.+|+||+.. +++.+..+.+|..-|.|..|+|....++++|-|.+|++||+.+-.-..
T Consensus 95 YVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 95 YVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred eeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCC
Confidence 999999999999999999 6999999999 899999999999999999999999999999999999999986110000
Q ss_pred ----------------e--------------------------------e--cceeEEEEEccCC-CEEEEEEecccCcE
Q psy11036 163 ----------------F--------------------------------T--GGLDVCIWDMLGG-GKLLHKFTCHHKTV 191 (239)
Q Consensus 163 ----------------~--------------------------------~--~~~~i~~~d~~~~-~~~~~~~~~h~~~v 191 (239)
+ + .+.+|++|-+... .-.+.+..+|.+.|
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnV 253 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNV 253 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCc
Confidence 0 1 2445899988654 34567789999999
Q ss_pred EEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 192 TSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 192 ~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
+++-|+|...++++.|.|++|+|||+...+.++++. ..+..+.++-+|
T Consensus 254 ssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP 302 (1202)
T KOG0292|consen 254 SSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP 302 (1202)
T ss_pred ceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC
Confidence 999999999999999999999999999999999997 556788887776
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=190.20 Aligned_cols=218 Identities=17% Similarity=0.247 Sum_probs=192.2
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
+-|.|..-+||++.++.....+.+|+ +.|+++.|+. ++.+|++|..+|.|+||...++.....+
T Consensus 81 TGGgDD~AflW~~~~ge~~~eltgHK--------------DSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~ 145 (399)
T KOG0296|consen 81 TGGGDDLAFLWDISTGEFAGELTGHK--------------DSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLD 145 (399)
T ss_pred ecCCCceEEEEEccCCcceeEecCCC--------------CceEEEEEcc-CceEEEecCCCccEEEEEcccCceEEEee
Confidence 34678899999999999999999999 9999999999 8999999999999999999999988887
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cce
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 159 (239)
..-..+.-+.|+|.+..|++|+ ||.+-+|.+. .+...+.+.+|+.++++=.|.|+|+.++++..||+|++|+.. ++.
T Consensus 146 ~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip-~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 146 QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP-SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred cccCceEEEEecccccEEEeecCCCcEEEEECC-CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce
Confidence 4667899999999999999999 8999999998 557788899999999999999999999999999999999998 665
Q ss_pred Eeee--------------------------------------------------------------------------ec
Q psy11036 160 VSSF--------------------------------------------------------------------------TG 165 (239)
Q Consensus 160 ~~~~--------------------------------------------------------------------------~~ 165 (239)
+..+ +|
T Consensus 225 ~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G 304 (399)
T KOG0296|consen 225 LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG 304 (399)
T ss_pred eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcc
Confidence 5544 11
Q ss_pred --ceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 166 --GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 166 --~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
++.|.+||... ..++..-.|..+|..+.|-+ ..+|++++.+|.|+.||.++|+++.++. |..+|.+++.+|
T Consensus 305 ~vdG~i~iyD~a~--~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 305 SVDGTIAIYDLAA--STLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP 378 (399)
T ss_pred cccceEEEEeccc--chhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC
Confidence 34488888754 23333345888999999998 7899999999999999999999999998 888999999886
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=184.64 Aligned_cols=219 Identities=20% Similarity=0.268 Sum_probs=187.7
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
+.|+|.+|++||...+.+++++.+|. ..|..++.+. ++..+++|+.|..+.+||+.+|+..+.+
T Consensus 34 tcGsdrtvrLWNp~rg~liktYsghG--------------~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r 98 (307)
T KOG0316|consen 34 TCGSDRTVRLWNPLRGALIKTYSGHG--------------HEVLDAALSS-DNSKFASCGGDKAVQVWDVNTGKVDRRFR 98 (307)
T ss_pred EcCCCceEEeecccccceeeeecCCC--------------ceeeeccccc-cccccccCCCCceEEEEEcccCeeeeecc
Confidence 46899999999999999999999998 8999999998 7889999999999999999999999999
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccC-CCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cc
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLG-GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LK 158 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~ 158 (239)
+|.+.|+.++|+.+...+++|+ |..+++||-+. ..++++.+......|.++..+ +..|++|+.||+++.||++ ++
T Consensus 99 gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~ 176 (307)
T KOG0316|consen 99 GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT 176 (307)
T ss_pred cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce
Confidence 7999999999999999999999 99999999984 356788888888899998884 6789999999999999998 55
Q ss_pred eEeeee--------------------cceeEEEEEccCCCEEEEEEecccCcEE--EEEEccCCCeEEEEcCCceEEEEE
Q psy11036 159 TVSSFT--------------------GGLDVCIWDMLGGGKLLHKFTCHHKTVT--SLCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 159 ~~~~~~--------------------~~~~i~~~d~~~~~~~~~~~~~h~~~v~--~~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
....+. -+..+++.|-.+ ++.+..+++|...-. ..+++.....+++||+||.|++||
T Consensus 177 l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~t-GklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 177 LSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred eehhhcCCcceeEEecCCCCEEEEeeccceeeecccch-hHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEE
Confidence 433331 133477888655 788888999987544 446677778999999999999999
Q ss_pred ccCCeeeEEecCCC-C-eeeeEecC
Q psy11036 217 MVNFSPVHTLDYPS-P-VLSIDVSM 239 (239)
Q Consensus 217 ~~~~~~~~~~~~~~-~-v~~~~~sp 239 (239)
+.....+..+.+.+ . +.+++++|
T Consensus 256 Lvd~~~~sk~~~~~~v~v~dl~~hp 280 (307)
T KOG0316|consen 256 LVDETQISKLSVVSTVIVTDLSCHP 280 (307)
T ss_pred eccceeeeeeccCCceeEEeeeccc
Confidence 99999999999555 4 68888887
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=183.48 Aligned_cols=188 Identities=23% Similarity=0.296 Sum_probs=163.1
Q ss_pred eeeeeeCCceeeccceeeccCCCCCeEEEEEecCC-CCEEEEeeCCCeEEEEeCCCCC---ceeee--cCCCCEEEEEEe
Q psy11036 20 QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVS-SDIVISGSYDKTVNVYDTRSPD---PVMSV--NHGSPVESVLCL 93 (239)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~v~vw~~~~~~---~~~~~--~~~~~v~~~~~~ 93 (239)
.++.+++|. +.+..++|+| . |.+|++++.|+.|++|+...+. +...+ .|+..|..++|+
T Consensus 6 ~~~~~~gh~--------------~r~W~~awhp-~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws 70 (312)
T KOG0645|consen 6 LEQKLSGHK--------------DRVWSVAWHP-GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS 70 (312)
T ss_pred eEEeecCCC--------------CcEEEEEecc-CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec
Confidence 456777887 9999999999 5 7899999999999999998533 33334 499999999999
Q ss_pred cCCcEEEEeC-CCcEEEEEcc-CCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEE
Q psy11036 94 PSGGIFVTGG-GLDVCIWDML-GGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCI 171 (239)
Q Consensus 94 ~~~~~l~~~~-~~~i~~~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~ 171 (239)
|.|++|++++ |.++.||.-. ...+.+..+.+|...|.+++|+++|++||+++.|..|-||.+..
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de-------------- 136 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE-------------- 136 (312)
T ss_pred CCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC--------------
Confidence 9999999999 9999999754 23578889999999999999999999999999999999998871
Q ss_pred EEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc---CCeeeEEec-CCCCeeeeEecC
Q psy11036 172 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV---NFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 172 ~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~---~~~~~~~~~-~~~~v~~~~~sp 239 (239)
....++...+++|.+.|..+.|+|...+|+++|.|.+|++|+-. ..++++++. +...|.+++|+|
T Consensus 137 ---ddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~ 205 (312)
T KOG0645|consen 137 ---DDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN 205 (312)
T ss_pred ---CCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC
Confidence 11356778889999999999999999999999999999999876 467889998 777999999986
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-29 Score=191.29 Aligned_cols=218 Identities=27% Similarity=0.393 Sum_probs=189.6
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
+.+|.|++|++.+++....+..|. ..+..+.|+| +++++++++.||.+++|++.+++....+ .+
T Consensus 28 ~~~g~i~i~~~~~~~~~~~~~~~~--------------~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~ 92 (289)
T cd00200 28 SGDGTIKVWDLETGELLRTLKGHT--------------GPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGH 92 (289)
T ss_pred ecCcEEEEEEeeCCCcEEEEecCC--------------cceeEEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEecc
Confidence 358999999999988888888888 8899999999 6789999999999999999987777766 57
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEe
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVS 161 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~ 161 (239)
...+.++.|+|++.++++++ ++.+.+||++ ..+....+..|...+.+++|+|++.++++++.|+.+++||++ .+.+.
T Consensus 93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 171 (289)
T cd00200 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171 (289)
T ss_pred CCcEEEEEEcCCCCEEEEecCCCeEEEEECC-CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce
Confidence 77999999999999999998 8999999998 678888888899999999999998888888889999999997 44333
Q ss_pred ee----------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 162 SF----------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 162 ~~----------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
.+ ..++.+.+||++. .+.+..+..|...+.++.|+|++.++++++.|+.|++||+.+
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST-GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred eEecCccccceEEECCCcCEEEEecCCCcEEEEECCC-CceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 32 2245699999876 566777778888999999999999999988899999999999
Q ss_pred CeeeEEec-CCCCeeeeEecC
Q psy11036 220 FSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 220 ~~~~~~~~-~~~~v~~~~~sp 239 (239)
++++..+. +...+.+++|+|
T Consensus 251 ~~~~~~~~~~~~~i~~~~~~~ 271 (289)
T cd00200 251 GECVQTLSGHTNSVTSLAWSP 271 (289)
T ss_pred ceeEEEccccCCcEEEEEECC
Confidence 99988887 677999999986
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=209.77 Aligned_cols=203 Identities=25% Similarity=0.322 Sum_probs=181.1
Q ss_pred CCCCCCCEEEEeeCCCc----ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc
Q psy11036 2 SHDLPILIVALWDIPSE----AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP 77 (239)
Q Consensus 2 s~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~ 77 (239)
.+.++|.++++|.++++ .++....+|. ..|.+++++.....+|+++|.|+++++|++...++
T Consensus 381 at~sKD~svilWr~~~~~~~~~~~a~~~gH~--------------~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~ 446 (775)
T KOG0319|consen 381 ATGSKDKSVILWRLNNNCSKSLCVAQANGHT--------------NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE 446 (775)
T ss_pred EEecCCceEEEEEecCCcchhhhhhhhcccc--------------cccceeeecccCccEEEEecCCceEEEecCCCccc
Confidence 35678999999977443 3455667888 99999999986678999999999999999976221
Q ss_pred -----ee----e-ecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec
Q psy11036 78 -----VM----S-VNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL 146 (239)
Q Consensus 78 -----~~----~-~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 146 (239)
.. + ..|...|++++.+|+.+++++|+ |.+.++|+++ .......+.+|...|.++.|+|..+.+++++.
T Consensus 447 ~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg 525 (775)
T KOG0319|consen 447 TAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSG 525 (775)
T ss_pred ccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEeeCCccceEEEEeccccceeEeccC
Confidence 11 1 13889999999999999999999 8999999999 89999999999999999999999999999999
Q ss_pred CCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEe
Q psy11036 147 DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226 (239)
Q Consensus 147 d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 226 (239)
|++|+||.+. +..++.++.+|..+|..+.|-.+|..|++++.||.|++|++++.++++++
T Consensus 526 D~TvKIW~is--------------------~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl 585 (775)
T KOG0319|consen 526 DKTVKIWSIS--------------------TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL 585 (775)
T ss_pred CceEEEEEec--------------------cceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh
Confidence 9999999998 67788888999999999999999999999999999999999999999999
Q ss_pred c-CCCCeeeeEecC
Q psy11036 227 D-YPSPVLSIDVSM 239 (239)
Q Consensus 227 ~-~~~~v~~~~~sp 239 (239)
. |...|++++-+|
T Consensus 586 D~H~DrvWaL~~~~ 599 (775)
T KOG0319|consen 586 DAHNDRVWALSVSP 599 (775)
T ss_pred hhccceeEEEeecC
Confidence 8 999999998765
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=187.97 Aligned_cols=201 Identities=19% Similarity=0.309 Sum_probs=171.2
Q ss_pred CCCCEEEEeeCC-CcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c
Q psy11036 5 LPILIVALWDIP-SEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N 82 (239)
Q Consensus 5 ~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~ 82 (239)
..||.++|||+. ...+++.++.|. ..|.++.|++...+.+++++-|++|++|+...++.+.++ +
T Consensus 80 ~GDGSLrl~d~~~~s~Pi~~~kEH~--------------~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g 145 (311)
T KOG0277|consen 80 SGDGSLRLFDLTMPSKPIHKFKEHK--------------REVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG 145 (311)
T ss_pred ecCceEEEeccCCCCcchhHHHhhh--------------hheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC
Confidence 468999999964 346788899998 999999999988888999999999999999999999999 7
Q ss_pred CCCCEEEEEEecC-CcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEEcccce
Q psy11036 83 HGSPVESVLCLPS-GGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMTLKT 159 (239)
Q Consensus 83 ~~~~v~~~~~~~~-~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~~ 159 (239)
|...|...+|+|. ...+++++ |+.+++||++..++.+. +..|...|.++.|+. +.+.+++|+.|+.|++||++
T Consensus 146 h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir--- 221 (311)
T KOG0277|consen 146 HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIR--- 221 (311)
T ss_pred CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehh---
Confidence 9999999999994 56666666 89999999997777666 889999999999987 56789999999999999988
Q ss_pred EeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC-CCeEEEEcCCceEEEEEccCCee-eEEec-CCCCeeeeE
Q psy11036 160 VSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG-GKRLISASLDHHAKIYEMVNFSP-VHTLD-YPSPVLSID 236 (239)
Q Consensus 160 ~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~~-~~~~~-~~~~v~~~~ 236 (239)
+-..++.++.+|.-+|..+.|||. ..+|++++.|-++||||...+.. +.+.. |..-+..+.
T Consensus 222 ----------------~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~D 285 (311)
T KOG0277|consen 222 ----------------NLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLD 285 (311)
T ss_pred ----------------hccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccc
Confidence 224667788999999999999995 56889999999999999985543 44444 666777777
Q ss_pred ecC
Q psy11036 237 VSM 239 (239)
Q Consensus 237 ~sp 239 (239)
||+
T Consensus 286 ws~ 288 (311)
T KOG0277|consen 286 WSL 288 (311)
T ss_pred ccc
Confidence 764
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-30 Score=180.22 Aligned_cols=186 Identities=24% Similarity=0.314 Sum_probs=160.9
Q ss_pred CCCCCCCCEEEEeeCCCc---ceeeee-eCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC-
Q psy11036 1 MSHDLPILIVALWDIPSE---AQVSTF-TNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP- 75 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~- 75 (239)
|.+.|.|+.|++|+...+ .+...+ .+|+ ..|++++|+| .+++|++|+.|.++.||.-..+
T Consensus 30 lAscg~Dk~vriw~~~~~~s~~ck~vld~~hk--------------rsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~e 94 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK--------------RSVRSVAWSP-HGRYLASASFDATVVIWKKEDGE 94 (312)
T ss_pred EEeecCCceEEEEecCCCCcEEEEEeccccch--------------heeeeeeecC-CCcEEEEeeccceEEEeecCCCc
Confidence 456789999999998743 333333 3577 8999999999 8999999999999999987644
Q ss_pred -Cceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEcc--CCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeE
Q psy11036 76 -DPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDML--GGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 150 (239)
Q Consensus 76 -~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~--~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 150 (239)
+++.++ +|+..|.+++|+++|.+||+++ |..|-+|.+. ...+....++.|...|..+.|+|....|++++.|++|
T Consensus 95 fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTI 174 (312)
T KOG0645|consen 95 FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTI 174 (312)
T ss_pred eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeE
Confidence 466677 7999999999999999999999 8999999987 3456778899999999999999999999999999999
Q ss_pred EEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 151 KIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 151 ~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
++|.-. | ...-++..++.+|...|.+++|++.|..|++++.|++++||...
T Consensus 175 k~~~~~----------------~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 175 KVYRDE----------------D-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred EEEeec----------------C-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 999765 1 22467888999999999999999999999999999999999864
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=181.53 Aligned_cols=202 Identities=17% Similarity=0.191 Sum_probs=181.0
Q ss_pred CCCCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee
Q psy11036 1 MSHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS 80 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 80 (239)
|.+.+.|..|++||.+.++++..+.... +.+ -+.|+| ++++++.++.|..|...|.++.+....
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i~~~~--------------eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARIETKG--------------ENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEeeccC--------------cce-EEEEcC-CCCEEEEecCcccEEEEEecccceeeh
Confidence 3456788999999999999998887764 444 678999 899999999999999999999988888
Q ss_pred ecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccce
Q psy11036 81 VNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKT 159 (239)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~ 159 (239)
.+....+..+.|+.++.+++... .|.|.|.... .-+++..+++|.....||.|+|+|++||+|+.|..+.+||++
T Consensus 144 ~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp-sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~--- 219 (313)
T KOG1407|consen 144 EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP-SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD--- 219 (313)
T ss_pred hcccceeeeeeecCCCCEEEEecCCceEEEEecc-ccccccccccCCcceEEEEECCCCceEeeccccceeeccChh---
Confidence 87788889999987777666555 6999999888 888999999999999999999999999999999999999998
Q ss_pred EeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 160 VSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 160 ~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.-.+++.+..+.-+|..++||.||++||++|+|..|-|=++++|..+..+++.++...++|+|
T Consensus 220 -----------------ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHP 282 (313)
T KOG1407|consen 220 -----------------ELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHP 282 (313)
T ss_pred -----------------HhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecC
Confidence 445566667788999999999999999999999999999999999999999999999999998
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-30 Score=216.98 Aligned_cols=207 Identities=19% Similarity=0.226 Sum_probs=173.7
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecC
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 83 (239)
.+.||.|++||+.+++.+..+.+|. +.|++++|+|.++.+|++|+.|++|++||++++..+..+.+
T Consensus 551 ~~~Dg~v~lWd~~~~~~~~~~~~H~--------------~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~ 616 (793)
T PLN00181 551 SNFEGVVQVWDVARSQLVTEMKEHE--------------KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT 616 (793)
T ss_pred EeCCCeEEEEECCCCeEEEEecCCC--------------CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 3568999999999999999999998 99999999975788999999999999999999988888866
Q ss_pred CCCEEEEEEe-cCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEe
Q psy11036 84 GSPVESVLCL-PSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVS 161 (239)
Q Consensus 84 ~~~v~~~~~~-~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 161 (239)
...+.++.|+ +++..+++|+ |+.|++||++.....+..+.+|...|.++.|. ++.+|++++.|++|++||++... .
T Consensus 617 ~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~-~ 694 (793)
T PLN00181 617 KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI-S 694 (793)
T ss_pred CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCc-c
Confidence 6789999996 4688999988 89999999984444677788999999999997 67899999999999999987110 0
Q ss_pred eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec--------------
Q psy11036 162 SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-------------- 227 (239)
Q Consensus 162 ~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-------------- 227 (239)
.....++..+.+|...+..++|+|++++|++|+.|+.|++|+.....++..+.
T Consensus 695 -------------~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 695 -------------GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred -------------ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCC
Confidence 00135667788999999999999999999999999999999987665543321
Q ss_pred CCCCeeeeEecC
Q psy11036 228 YPSPVLSIDVSM 239 (239)
Q Consensus 228 ~~~~v~~~~~sp 239 (239)
+...|.+++|+|
T Consensus 762 ~~~~V~~v~ws~ 773 (793)
T PLN00181 762 ASQFISSVCWRG 773 (793)
T ss_pred CCcEEEEEEEcC
Confidence 234699999986
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-30 Score=179.84 Aligned_cols=202 Identities=20% Similarity=0.268 Sum_probs=184.7
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecC
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 83 (239)
.+.|....||-..+|+.+.++.+|. +.|.|++.+. +...+++|+.|.++++||+++|+++.+++.
T Consensus 28 caKD~~~~vw~s~nGerlGty~GHt--------------GavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la~~k~ 92 (327)
T KOG0643|consen 28 CAKDSTPTVWYSLNGERLGTYDGHT--------------GAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLATWKT 92 (327)
T ss_pred ecCCCCceEEEecCCceeeeecCCC--------------ceEEEEEecC-CcceeeeccccceeEEEEcCCCcEEEEeec
Confidence 4688999999988999999999999 9999999998 789999999999999999999999999999
Q ss_pred CCCEEEEEEecCCcEEEEeCC------CcEEEEEccC------CCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEE
Q psy11036 84 GSPVESVLCLPSGGIFVTGGG------LDVCIWDMLG------GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAK 151 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~~------~~i~~~d~~~------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 151 (239)
+.+|..+.|+++|.+++...| +.|.++|++. ..+++..+..+...++.+.|.|-+++|++|.+||.|.
T Consensus 93 ~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is 172 (327)
T KOG0643|consen 93 NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSIS 172 (327)
T ss_pred CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEE
Confidence 999999999999998887763 5689999973 2456778888889999999999999999999999999
Q ss_pred EEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCC
Q psy11036 152 IYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSP 231 (239)
Q Consensus 152 i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~ 231 (239)
+||++ ++.+.+..-+.|...|+.+++++|..+++|+|.|.+-++||+.+.+.++++....|
T Consensus 173 ~~da~-------------------~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P 233 (327)
T KOG0643|consen 173 IYDAR-------------------TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP 233 (327)
T ss_pred EEEcc-------------------cCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc
Confidence 99987 33466666688999999999999999999999999999999999999999999999
Q ss_pred eeeeEecC
Q psy11036 232 VLSIDVSM 239 (239)
Q Consensus 232 v~~~~~sp 239 (239)
|++.+++|
T Consensus 234 vN~aaisP 241 (327)
T KOG0643|consen 234 VNTAAISP 241 (327)
T ss_pred ccceeccc
Confidence 99999988
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-30 Score=200.62 Aligned_cols=207 Identities=22% Similarity=0.365 Sum_probs=177.5
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
+.||.|+|||..++-+..+|..|+ ..|+.+.|+. .++.+++.+.||+|+.||+...+.-+++..+
T Consensus 369 ~eDgKVKvWn~~SgfC~vTFteHt--------------s~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P 433 (893)
T KOG0291|consen 369 AEDGKVKVWNTQSGFCFVTFTEHT--------------SGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP 433 (893)
T ss_pred cCCCcEEEEeccCceEEEEeccCC--------------CceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCC
Confidence 578999999999999999999999 9999999999 8999999999999999999999998888544
Q ss_pred --CCEEEEEEecCCcEEEEeC-C-CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEccc--c
Q psy11036 85 --SPVESVLCLPSGGIFVTGG-G-LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTL--K 158 (239)
Q Consensus 85 --~~v~~~~~~~~~~~l~~~~-~-~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~--~ 158 (239)
....|++..|.|..+++|+ | -.|++|+++ +++.+..+.+|.+||.+++|+|++..|++++.|.+|++||+-. .
T Consensus 434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q-TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~ 512 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ-TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG 512 (893)
T ss_pred CceeeeEEEEcCCCCEEEeeccceEEEEEEEee-cCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc
Confidence 4557888899999999998 5 679999999 9999999999999999999999999999999999999999851 1
Q ss_pred eEee---------------------eecceeEEEEEccCCCEEE---------------EEE----ecccCcEEEEEEcc
Q psy11036 159 TVSS---------------------FTGGLDVCIWDMLGGGKLL---------------HKF----TCHHKTVTSLCLAS 198 (239)
Q Consensus 159 ~~~~---------------------~~~~~~i~~~d~~~~~~~~---------------~~~----~~h~~~v~~~~~s~ 198 (239)
.+.+ .+-+++|.+||+....+.- ..+ .......+.+++|+
T Consensus 513 ~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa 592 (893)
T KOG0291|consen 513 TVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA 592 (893)
T ss_pred eeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC
Confidence 2222 2557789999986543320 001 11235689999999
Q ss_pred CCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 199 GGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 199 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
||..+++|+....|+||++.++-.+++++
T Consensus 593 DG~~IlAgG~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 593 DGKCILAGGESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred CCCEEEecCCcccEEEEECchhheeeeEE
Confidence 99999999999999999999999988876
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-32 Score=197.25 Aligned_cols=193 Identities=24% Similarity=0.402 Sum_probs=150.4
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N 82 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~ 82 (239)
..+|.+|.|||..+..+.+.+.+|. +.|.|+.|. .+.+++|+.|.+|++||+.+++++.++ .
T Consensus 213 GlrDnTikiWD~n~~~c~~~L~GHt--------------GSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tlih 275 (499)
T KOG0281|consen 213 GLRDNTIKIWDKNSLECLKILTGHT--------------GSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIH 275 (499)
T ss_pred ccccCceEEeccccHHHHHhhhcCC--------------CcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHhh
Confidence 4578999999999999999999999 999999995 469999999999999999999999988 7
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCe--EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cc
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGK--LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LK 158 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~ 158 (239)
|...|..+.|+ ..++++++ |.++.+||+..+.. ..+.+.+|...|..+.| +.+++++++.|.+|++|++. .+
T Consensus 276 HceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~e 351 (499)
T KOG0281|consen 276 HCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCE 351 (499)
T ss_pred hcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEecccee
Confidence 99999999997 45777777 89999999984432 23456799999999999 45699999999999999998 44
Q ss_pred eEeee--------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 159 TVSSF--------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 159 ~~~~~--------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
.+.++ +.+..|++||+. .+.++..+++|+.-|.++.| |.+.+++|+.||+|++||+.
T Consensus 352 fvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~-~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 352 FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE-CGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred eehhhhcccccceehhccCeEEEecCCCceEEEEecc-ccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecc
Confidence 44444 122335666642 55566666666666666665 36666666666666666655
Q ss_pred CC
Q psy11036 219 NF 220 (239)
Q Consensus 219 ~~ 220 (239)
.+
T Consensus 429 aa 430 (499)
T KOG0281|consen 429 AA 430 (499)
T ss_pred cc
Confidence 44
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=201.85 Aligned_cols=176 Identities=24% Similarity=0.407 Sum_probs=159.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC--ceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD--PVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~ 118 (239)
..|.++.|++ +++.+++++.|+.+++|+..+.+ ....+ +|...|.+++|+|+++++++++ |+++++||+...+..
T Consensus 160 ~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 160 PSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred CceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 7899999999 78889999999999999997776 55555 6999999999999999999999 799999999657789
Q ss_pred EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc
Q psy11036 119 LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS 198 (239)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~ 198 (239)
++++++|...|++++|+|+|+.+++|+.|++|+|||++ .+++...+.+|.+.|++++|++
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~--------------------~~~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR--------------------TGECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc--------------------CCeEEEeeeccCCceEEEEECC
Confidence 99999999999999999999999999999999999998 5788888899999999999999
Q ss_pred CCCeEEEEcCCceEEEEEccCCe--eeEEec-CCC--CeeeeEecC
Q psy11036 199 GGKRLISASLDHHAKIYEMVNFS--PVHTLD-YPS--PVLSIDVSM 239 (239)
Q Consensus 199 ~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~-~~~--~v~~~~~sp 239 (239)
++++|++++.|+.|+|||+.+++ ++..+. ... ++++++|+|
T Consensus 299 d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp 344 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP 344 (456)
T ss_pred CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC
Confidence 99999999999999999999999 556665 222 589999987
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=184.14 Aligned_cols=218 Identities=22% Similarity=0.329 Sum_probs=181.9
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCC--CCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVS--SDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
.-||.+++||. .|+...++.+|. ++|.+++|.--+ ...+++++.|.++++|..+.+......
T Consensus 122 sYDg~~riWd~-~Gk~~~~~~Ght--------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~ 186 (423)
T KOG0313|consen 122 SYDGTSRIWDL-KGKSIKTIVGHT--------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL 186 (423)
T ss_pred ecCCeeEEEec-CCceEEEEecCC--------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH
Confidence 46899999997 788899999999 999988887522 235999999999999999877543221
Q ss_pred ----cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccC------------------------CCeEEEEEeccCCceEEE
Q psy11036 82 ----NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLG------------------------GGKLLHKFTCHHKTVTSL 132 (239)
Q Consensus 82 ----~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~------------------------~~~~~~~~~~~~~~i~~i 132 (239)
+|+..|.++...+++..+++|+ |..+.+|+... .+.++..+.+|..+|.++
T Consensus 187 ~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V 266 (423)
T KOG0313|consen 187 KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV 266 (423)
T ss_pred hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeE
Confidence 6999999999999999999999 99999999321 134677788999999999
Q ss_pred EEcCCCCEEEEEecCCeEEEEEcc-cceEeee-------------------ec--ceeEEEEEccCCC--EEEEEEeccc
Q psy11036 133 CLASGGKRLISASLDHHAKIYEMT-LKTVSSF-------------------TG--GLDVCIWDMLGGG--KLLHKFTCHH 188 (239)
Q Consensus 133 ~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~-------------------~~--~~~i~~~d~~~~~--~~~~~~~~h~ 188 (239)
.|++ ...+.+++.|.+|+.||+. +....++ +| +..+++||.++.. ...+.+.+|.
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~ 345 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK 345 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecch
Confidence 9987 6789999999999999998 5544443 22 3449999998753 4567789999
Q ss_pred CcEEEEEEccCC-CeEEEEcCCceEEEEEccCCe-eeEEec-CCCCeeeeEec
Q psy11036 189 KTVTSLCLASGG-KRLISASLDHHAKIYEMVNFS-PVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 189 ~~v~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~s 238 (239)
+.|.++.|+|.. ..|++++.|+++++||+++-+ ++..+. |...|.++.|+
T Consensus 346 nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 346 NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc
Confidence 999999999954 567899999999999999877 999988 88999999986
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-29 Score=188.28 Aligned_cols=222 Identities=17% Similarity=0.218 Sum_probs=180.2
Q ss_pred CCCCCCCCEEEEeeCCCcceeeeee---CCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc
Q psy11036 1 MSHDLPILIVALWDIPSEAQVSTFT---NHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP 77 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~ 77 (239)
|.+.|.||.|.+||=.+++.+..+. +|+ +.|.+++|+| ++..+++++.|.+++|||+.+.+.
T Consensus 205 Fat~gsDgki~iyDGktge~vg~l~~~~aHk--------------GsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 205 FATAGSDGKIYIYDGKTGEKVGELEDSDAHK--------------GSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred EEEecCCccEEEEcCCCccEEEEecCCCCcc--------------ccEEEEEECC-CCceEEEecCCceEEEEEeeccce
Confidence 3445689999999999999999998 676 9999999999 899999999999999999999999
Q ss_pred eeeecCC----CCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy11036 78 VMSVNHG----SPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIY 153 (239)
Q Consensus 78 ~~~~~~~----~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 153 (239)
+.++... .....+.|. ++.++.+..+|.|.+++.. ...++..+.+|...|+++..+|++++|++|+.||.|.-|
T Consensus 270 v~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~-d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPS-DPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred EEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEeccc-CCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence 9888433 233444554 4444444449999999998 566999999999999999999999999999999999999
Q ss_pred Ecc-cc-----------eEeee----------------------------------------------------------
Q psy11036 154 EMT-LK-----------TVSSF---------------------------------------------------------- 163 (239)
Q Consensus 154 d~~-~~-----------~~~~~---------------------------------------------------------- 163 (239)
+.. +. .+..+
T Consensus 348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence 985 11 11111
Q ss_pred --------------------------------ec--ceeEEEEEccCCC-EEEEEEecccCcEEEEEEccCCCeEEEEcC
Q psy11036 164 --------------------------------TG--GLDVCIWDMLGGG-KLLHKFTCHHKTVTSLCLASGGKRLISASL 208 (239)
Q Consensus 164 --------------------------------~~--~~~i~~~d~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 208 (239)
.| ++.+++|.+.... .....+..|.++|++++||||+.+||++..
T Consensus 428 iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 428 IVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred EEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc
Confidence 01 2337778776643 344466789999999999999999999999
Q ss_pred CceEEEEEccCCeeeE-Eec-CCCCeeeeEecC
Q psy11036 209 DHHAKIYEMVNFSPVH-TLD-YPSPVLSIDVSM 239 (239)
Q Consensus 209 d~~i~iwd~~~~~~~~-~~~-~~~~v~~~~~sp 239 (239)
.+.+.+||+.+.+... .+. |.+.|++++|+|
T Consensus 508 ~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP 540 (603)
T KOG0318|consen 508 SRKVVLYDVASREVKTNRWAFHTAKINCVAWSP 540 (603)
T ss_pred CCcEEEEEcccCceecceeeeeeeeEEEEEeCC
Confidence 9999999999887732 233 889999999998
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-29 Score=177.12 Aligned_cols=202 Identities=19% Similarity=0.219 Sum_probs=168.3
Q ss_pred CCCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 2 SHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 2 s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
|+...|.+|+..++.+.+.++.|.+|. ..|.+++.+| .++.+++++.|++|++||++..++...+
T Consensus 74 sStk~d~tIryLsl~dNkylRYF~GH~--------------~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 74 SSTKEDDTIRYLSLHDNKYLRYFPGHK--------------KRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred ccCCCCCceEEEEeecCceEEEcCCCC--------------ceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEE
Confidence 344568899999999999999999999 9999999999 7799999999999999999988877766
Q ss_pred cCCCCEEEEEEecCCcEEEEeCC-CcEEEEEccCC-CeEEEEEec---cCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGGG-LDVCIWDMLGG-GKLLHKFTC---HHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~~-~~i~~~d~~~~-~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
...+ -..++|+|+|-++|++.. +.|++||++.- +.+..++.- .....+.+.|+|+|++|+.+...+.+++.|.-
T Consensus 139 ~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 139 NLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF 217 (311)
T ss_pred ecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc
Confidence 4322 335789999999999985 59999999953 345555543 35688999999999999999999999999877
Q ss_pred cceEeeeecceeEEEEEccCCCEEEEEEecccCcE---EEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec--CCCC
Q psy11036 157 LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTV---TSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD--YPSP 231 (239)
Q Consensus 157 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v---~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~ 231 (239)
.+..+..+..+...- ...+|+||++++++|+.||+|.+|++++++.+..+. +.++
T Consensus 218 --------------------~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~ 277 (311)
T KOG1446|consen 218 --------------------DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGP 277 (311)
T ss_pred --------------------CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCC
Confidence 344444445444322 577899999999999999999999999999999988 4678
Q ss_pred eeeeEecC
Q psy11036 232 VLSIDVSM 239 (239)
Q Consensus 232 v~~~~~sp 239 (239)
+.++.|+|
T Consensus 278 ~~~~~fnP 285 (311)
T KOG1446|consen 278 VSCVRFNP 285 (311)
T ss_pred ccccccCC
Confidence 99999988
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=188.04 Aligned_cols=229 Identities=18% Similarity=0.238 Sum_probs=189.2
Q ss_pred CCCCC-------CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCC
Q psy11036 1 MSHDL-------PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTR 73 (239)
Q Consensus 1 fs~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 73 (239)
||||| .||.|.+||..+|+..+.++-.. ...+-...++|.|+.|+. +.+.+++|+.||.|++|.++
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA------qd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA------QDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhhhhhhh------hcceeecccceEEEeecc-cHHHhhccCcCCcEEEEEEe
Confidence 67776 47999999999998766554221 011222338999999999 89999999999999999999
Q ss_pred CCCceeee--cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeE
Q psy11036 74 SPDPVMSV--NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 150 (239)
Q Consensus 74 ~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 150 (239)
+|++++.+ .|...|+|+.|+.++..+.+++ |.++++.-+. .++.++.+++|...|+...|.++|.++++++.||+|
T Consensus 294 tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 294 TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTV 372 (508)
T ss_pred cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHHHhcCccccccceEEcCCCCeEEEecCCccE
Confidence 99999999 4999999999999999999998 8999999998 899999999999999999999999999999999999
Q ss_pred EEEEcc-cceEeeee-------------------------cceeEEEEEccCCCEEEEEEec---ccCcEEEEEEccCCC
Q psy11036 151 KIYEMT-LKTVSSFT-------------------------GGLDVCIWDMLGGGKLLHKFTC---HHKTVTSLCLASGGK 201 (239)
Q Consensus 151 ~i~d~~-~~~~~~~~-------------------------~~~~i~~~d~~~~~~~~~~~~~---h~~~v~~~~~s~~~~ 201 (239)
++|+.+ .+++.++. ....+++.++ .++.+..+.. ..+...+.+.||.|.
T Consensus 373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~--qGQvVrsfsSGkREgGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM--QGQVVRSFSSGKREGGDFINAILSPKGE 450 (508)
T ss_pred EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec--cceEEeeeccCCccCCceEEEEecCCCc
Confidence 999999 78777762 1233555554 3455655543 234566778999999
Q ss_pred eEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 202 RLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 202 ~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
++.+.+.|+.++.|...+|+.-.++. |+..+..++-+|
T Consensus 451 wiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP 489 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP 489 (508)
T ss_pred EEEEEccCcEEEEEEeecCceeeeeecccccccccccCc
Confidence 99999999999999999999998888 666776666555
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-29 Score=172.93 Aligned_cols=200 Identities=18% Similarity=0.249 Sum_probs=164.8
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC-Cceeee-cCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP-DPVMSV-NHG 84 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~-~~~ 84 (239)
.|.+.|.++..++-+.++..-.. .+.+..++|++...+.+++++.||++++||+... .++..+ +|.
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~------------~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~ 104 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDT------------EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHK 104 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeec------------ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhh
Confidence 48899999865554444433210 0789999999988889999999999999997533 466666 699
Q ss_pred CCEEEEEEecC-CcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEEcccceEe
Q psy11036 85 SPVESVLCLPS-GGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMTLKTVS 161 (239)
Q Consensus 85 ~~v~~~~~~~~-~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~ 161 (239)
..|.++.|++- +..+++++ |++|++|+.. ..+.+.++.+|...|...+|+| ..+.+++++.|+.+++||++
T Consensus 105 ~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr----- 178 (311)
T KOG0277|consen 105 REVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR----- 178 (311)
T ss_pred hheEEeccccccceeEEeeccCCceEeecCC-CCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec-----
Confidence 99999999984 45566666 9999999998 7888999999999999999999 56899999999999999988
Q ss_pred eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEcCCceEEEEEccCC-eeeEEec-CCCCeeeeEec
Q psy11036 162 SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMVNF-SPVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 162 ~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~s 238 (239)
..++.+. +..|...|.++.|+. +.+.|+||+.|+.|++||+++. .++..+. |.-.|..+.||
T Consensus 179 --------------~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 179 --------------SPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred --------------CCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence 2234443 688999999999997 6778999999999999999875 5677777 77799999999
Q ss_pred C
Q psy11036 239 M 239 (239)
Q Consensus 239 p 239 (239)
|
T Consensus 244 p 244 (311)
T KOG0277|consen 244 P 244 (311)
T ss_pred c
Confidence 8
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=181.16 Aligned_cols=179 Identities=23% Similarity=0.417 Sum_probs=166.4
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
..++|.+|+.|+..++.++.++.+|. ..|..++.+. ++.++++++.|.+|++|-+.++++...+
T Consensus 210 S~srD~tik~We~~tg~cv~t~~~h~--------------ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 210 SCSRDNTIKAWECDTGYCVKTFPGHS--------------EWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred ecccccceeEEecccceeEEeccCch--------------HhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhh
Confidence 46789999999999999999999999 9999999999 8999999999999999999999888877
Q ss_pred cCCCCEEEEEEecC---------------CcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEe
Q psy11036 82 NHGSPVESVLCLPS---------------GGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS 145 (239)
Q Consensus 82 ~~~~~v~~~~~~~~---------------~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 145 (239)
.|+-+|.+++|.|. ++++.+++ |++|++||+. .+..+.++.+|.+.|..++|+|.|++|+++.
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~-tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca 353 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS-TGMCLFTLVGHDNWVRGVAFSPGGKYILSCA 353 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc-CCeEEEEEecccceeeeeEEcCCCeEEEEEe
Confidence 69999999999763 24788888 8999999999 8999999999999999999999999999999
Q ss_pred cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 146 LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 146 ~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
.|+++++||++ ..+++..+..|..-|+++.|+.+..+++||+-|..+++|..
T Consensus 354 DDktlrvwdl~--------------------~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 354 DDKTLRVWDLK--------------------NLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCcEEEEEec--------------------cceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999998 67788888999999999999999999999999999999974
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=186.95 Aligned_cols=181 Identities=21% Similarity=0.379 Sum_probs=163.6
Q ss_pred CCCCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee
Q psy11036 1 MSHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS 80 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 80 (239)
|...+.||.|+|+.+...+++.++.+|. ++|.++.|+| .+.+|++++.|++++||+.........
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~--------------g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~ 396 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHH--------------GEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHD 396 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeeccc--------------CceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhh
Confidence 5677889999999999999999999999 9999999999 899999999999999999988888887
Q ss_pred e-cCCCCEEEEEEecCCc---------EEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCe
Q psy11036 81 V-NHGSPVESVLCLPSGG---------IFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHH 149 (239)
Q Consensus 81 ~-~~~~~v~~~~~~~~~~---------~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 149 (239)
+ .|...|..+.|+|.|. .+++++ |++|++||+. .+.+++.+..|..+|.+++|+|+|+++|+|+.||.
T Consensus 397 l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~-~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 397 LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE-SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC 475 (524)
T ss_pred hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc-CCceeEeeccCCCceEEEEecCCCcEEEecCCCCe
Confidence 7 6999999999999653 566666 8999999999 89999999999999999999999999999999999
Q ss_pred EEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 150 AKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 150 i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
|.+|+.+ .++.++.+.+ .+.|..++|+.+|..|..+-.|+.+++.|++
T Consensus 476 V~iws~~--------------------~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 476 VHIWSTK--------------------TGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEecccc--------------------chheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999998 4566666665 5669999999999999999999999999875
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=185.72 Aligned_cols=200 Identities=20% Similarity=0.274 Sum_probs=176.2
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N 82 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~ 82 (239)
-|.|..+.++|..+++.+.+|++|. ..|+.+.++| +...+++++.|..|+||........... .
T Consensus 237 GG~d~~av~~d~~s~q~l~~~~Gh~--------------kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~~~~ 301 (506)
T KOG0289|consen 237 GGEDKTAVLFDKPSNQILATLKGHT--------------KKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTSSRP 301 (506)
T ss_pred cCCCCceEEEecchhhhhhhccCcc--------------eEEEEEEecc-chhheeecCCcceEEeeccccccCcccccc
Confidence 4678899999999999999999999 9999999999 7889999999999999999877655555 7
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEec--cCCceEEEEEcCCCCEEEEEecCCeEEEEEcccce
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKT 159 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~ 159 (239)
|.++|+.+..+|.|.+|++++ |+...+.|++ .+..+..... ..-.+++.+|+|||..|.+|..|+.++|||+.
T Consensus 302 h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~-~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk--- 377 (506)
T KOG0289|consen 302 HEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS-SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK--- 377 (506)
T ss_pred ccccceeeeeccCCcEEEEecCCceEEEEEcc-CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC---
Confidence 999999999999999999999 7999999999 6666555443 22468999999999999999999999999998
Q ss_pred EeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCC--CeeeeEe
Q psy11036 160 VSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPS--PVLSIDV 237 (239)
Q Consensus 160 ~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~ 237 (239)
.+..+..|.+|.++|..++|+.||-+|+++++|+.|++||++..+..+++..+. ++.+++|
T Consensus 378 -----------------s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~f 440 (506)
T KOG0289|consen 378 -----------------SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSF 440 (506)
T ss_pred -----------------CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEE
Confidence 445667778999999999999999999999999999999999999988888544 5888887
Q ss_pred cC
Q psy11036 238 SM 239 (239)
Q Consensus 238 sp 239 (239)
.+
T Consensus 441 D~ 442 (506)
T KOG0289|consen 441 DQ 442 (506)
T ss_pred cC
Confidence 53
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=184.93 Aligned_cols=211 Identities=21% Similarity=0.310 Sum_probs=178.3
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSP 86 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~ 86 (239)
|.+.+|| +|..+.++.+|. ..|.+++|-|...-++++|++|++|.+|+=...+-..++ .|..-
T Consensus 129 g~~F~~D--SG~SvGei~GhS--------------r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskF 192 (603)
T KOG0318|consen 129 GHVFLWD--SGNSVGEITGHS--------------RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKF 192 (603)
T ss_pred eEEEEec--CCCccceeeccc--------------eeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccc
Confidence 5666666 788889999999 899999999976779999999999999986655555555 58889
Q ss_pred EEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEe---ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEe
Q psy11036 87 VESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFT---CHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVS 161 (239)
Q Consensus 87 v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~ 161 (239)
|.|+.|+|||.++++++ ||.+.+||-. +++.+..+. +|.+.|.+++|+||+..+++++.|.+++|||+. .+.+.
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGk-tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGK-TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCC-CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 99999999999999988 8999999998 889998888 899999999999999999999999999999998 66666
Q ss_pred ee-----------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 162 SF-----------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 162 ~~-----------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
++ +-++.+.+++.... .+...+.+|...|+++..+|++++|++|+.||.|.-|+..
T Consensus 272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP-SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC-ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 55 23444666776654 4888899999999999999999999999999999999998
Q ss_pred CCeeeEEec--CCCCeeeeE
Q psy11036 219 NFSPVHTLD--YPSPVLSID 236 (239)
Q Consensus 219 ~~~~~~~~~--~~~~v~~~~ 236 (239)
+|..-+... |...|..++
T Consensus 351 ~g~~~~~~g~~h~nqI~~~~ 370 (603)
T KOG0318|consen 351 SGTSDRLAGKGHTNQIKGMA 370 (603)
T ss_pred CccccccccccccceEEEEe
Confidence 876544331 555555554
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=184.75 Aligned_cols=217 Identities=20% Similarity=0.362 Sum_probs=179.9
Q ss_pred CCCCEEEEeeCCCc---ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 5 LPILIVALWDIPSE---AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
++|.+..+|++... +...++.+|. .+|.-+.|+| +.++|++++.|..+.+||+.++.....+
T Consensus 243 SkD~Taiiw~v~~d~~~kl~~tlvgh~--------------~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y 307 (519)
T KOG0293|consen 243 SKDSTAIIWIVVYDVHFKLKKTLVGHS--------------QPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLY 307 (519)
T ss_pred cCCceEEEEEEecCcceeeeeeeeccc--------------CceEEEEECC-CCCeEEecCchHheeeccCCcchhhhhc
Confidence 46789999987543 4577889998 9999999999 8899999999999999999999998888
Q ss_pred cC--CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccC-CceEEEEEcCCCCEEEEEecCCeEEEEEcc-
Q psy11036 82 NH--GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHH-KTVTSLCLASGGKRLISASLDHHAKIYEMT- 156 (239)
Q Consensus 82 ~~--~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~- 156 (239)
++ ...+.+++|.|||..+++|+ |+.+..||++ +......++.. ..|.+++..+||+++++.+.|..|++++..
T Consensus 308 ~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD--gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 308 PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD--GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred ccCcCCCcceeEEccCCceeEecCCCCcEEEecCC--cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence 54 47899999999999999999 8999999996 55555555443 468999999999999999999999999986
Q ss_pred c--c-------eEeee--e----------cceeEEEEEccCCCEEEEEEecccCc--EEEEEEcc-CCCeEEEEcCCceE
Q psy11036 157 L--K-------TVSSF--T----------GGLDVCIWDMLGGGKLLHKFTCHHKT--VTSLCLAS-GGKRLISASLDHHA 212 (239)
Q Consensus 157 ~--~-------~~~~~--~----------~~~~i~~~d~~~~~~~~~~~~~h~~~--v~~~~~s~-~~~~l~s~s~d~~i 212 (239)
. . .+.++ + ....+.+||+. +...+..+.||... +..-+|.- +..++++||+|+.|
T Consensus 386 ~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 386 RVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE-ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred hhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecc-hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence 1 1 12222 2 23448999998 47778888888765 33445654 55899999999999
Q ss_pred EEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 213 KIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 213 ~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
+||+..+++++..+. |...|++++|+|
T Consensus 465 yIWhr~sgkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 465 YIWHRISGKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred EEEEccCCceeEeecCCcceeeEEecCC
Confidence 999999999999999 888999999998
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=202.58 Aligned_cols=202 Identities=22% Similarity=0.290 Sum_probs=173.9
Q ss_pred CCCCCCEEEEeeCCC---cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee
Q psy11036 3 HDLPILIVALWDIPS---EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM 79 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 79 (239)
+.+..|.|.+||+.. .+++..|..|+ ..++++.|++...++|++|+.||+|++||++..+...
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~--------------Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~ 170 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHE--------------RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS 170 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhc--------------cceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence 456789999999976 56677899999 9999999999889999999999999999999888877
Q ss_pred ee-cCCCCEEEEEEec-CCcEEEEeCC-CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 80 SV-NHGSPVESVLCLP-SGGIFVTGGG-LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 80 ~~-~~~~~v~~~~~~~-~~~~l~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
++ .....|..+.|+| .+..++++.| |.+.+||++...+....+.+|.++|.++.|+|++.+||+||.|++|+|||+.
T Consensus 171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence 77 6778899999999 4667777775 9999999998888888999999999999999999999999999999999997
Q ss_pred -c--ceEeee------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEcC
Q psy11036 157 -L--KTVSSF------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASL 208 (239)
Q Consensus 157 -~--~~~~~~------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~ 208 (239)
. ....++ .++..|++||++...-+...+..|...++.++|.. |...|.+++.
T Consensus 251 ~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sK 330 (839)
T KOG0269|consen 251 DSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSK 330 (839)
T ss_pred CCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecC
Confidence 2 222222 34566999999999999999999999999999976 4567889999
Q ss_pred CceEEEEEcc
Q psy11036 209 DHHAKIYEMV 218 (239)
Q Consensus 209 d~~i~iwd~~ 218 (239)
||.|..-.++
T Consensus 331 D~tv~qh~~k 340 (839)
T KOG0269|consen 331 DGTVLQHLFK 340 (839)
T ss_pred ccHHHHhhhh
Confidence 9987654443
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=176.57 Aligned_cols=202 Identities=20% Similarity=0.308 Sum_probs=168.0
Q ss_pred CCCCCCCCEEEEeeCC-CcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee
Q psy11036 1 MSHDLPILIVALWDIP-SEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM 79 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 79 (239)
|.+.|.|..|.+|++. .-+....+++|. +.|..+.|.+ +++.+++++.|.+|+.||+++++.++
T Consensus 62 ~aSgG~Dr~I~LWnv~gdceN~~~lkgHs--------------gAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 62 FASGGSDRAIVLWNVYGDCENFWVLKGHS--------------GAVMELHGMR-DGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred EeecCCcceEEEEeccccccceeeecccc--------------ceeEeeeecc-CCCEEEEecCCceEEEEecccceeee
Confidence 4456789999999964 445667889999 9999999999 89999999999999999999999999
Q ss_pred ee-cCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 80 SV-NHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 80 ~~-~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
.+ .|..-|..+.-+.-|..++..+ |+++++||++ .+..++++. ..-+++++.|..++..+.+|+-|+.|++||++
T Consensus 127 k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R-~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r 204 (338)
T KOG0265|consen 127 KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR-KKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLR 204 (338)
T ss_pred hhccccceeeecCccccCCeEEEecCCCceEEEEeec-ccchhhccc-cceeEEEEEecccccceeeccccCceeeeccc
Confidence 88 5888888887555566666555 6999999999 777777765 45689999999999999999999999999998
Q ss_pred cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCe----eeEEec-----
Q psy11036 157 LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFS----PVHTLD----- 227 (239)
Q Consensus 157 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~----- 227 (239)
.......+.+|..+|+.+..+|+|.++.+-+.|.++++||++-.. ++..+.
T Consensus 205 --------------------~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn 264 (338)
T KOG0265|consen 205 --------------------KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN 264 (338)
T ss_pred --------------------cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhh
Confidence 466677789999999999999999999999999999999997543 344444
Q ss_pred CCCCeeeeEecC
Q psy11036 228 YPSPVLSIDVSM 239 (239)
Q Consensus 228 ~~~~v~~~~~sp 239 (239)
.+......+|+|
T Consensus 265 feknlL~cswsp 276 (338)
T KOG0265|consen 265 FEKNLLKCSWSP 276 (338)
T ss_pred hhhhcceeeccC
Confidence 223455566665
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-28 Score=205.21 Aligned_cols=221 Identities=16% Similarity=0.224 Sum_probs=173.5
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC----C----ce
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP----D----PV 78 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~----~----~~ 78 (239)
+|.+++|+..+.+....++... ...+.+.|.+++|+| +++++++|+.|+.|++|++... . +.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~---------~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~ 526 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGD---------LLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPV 526 (793)
T ss_pred hhhhhhhcccceEEEEeecccc---------ccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccce
Confidence 4557777776555443333211 011228999999999 8999999999999999997542 1 22
Q ss_pred eeecCCCCEEEEEEec-CCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEEc
Q psy11036 79 MSVNHGSPVESVLCLP-SGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEM 155 (239)
Q Consensus 79 ~~~~~~~~v~~~~~~~-~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~ 155 (239)
..+.+...+.+++|+| .+.++++++ |+.|++||+. .++.+..+.+|...|.+++|+| ++.+|++|+.|+.|++||+
T Consensus 527 ~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~-~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~ 605 (793)
T PLN00181 527 VELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA-RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605 (793)
T ss_pred EEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECC-CCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence 3344567899999987 467888888 8999999998 7788889999999999999997 7889999999999999999
Q ss_pred c-cceEeee----------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceE
Q psy11036 156 T-LKTVSSF----------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 212 (239)
Q Consensus 156 ~-~~~~~~~----------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i 212 (239)
+ +..+..+ ..++.|++||+++...+...+.+|...|.++.|. ++.+|++++.|+.|
T Consensus 606 ~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~i 684 (793)
T PLN00181 606 NQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTL 684 (793)
T ss_pred CCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEE
Confidence 8 4443322 2345699999987666677788999999999997 78899999999999
Q ss_pred EEEEccC------CeeeEEec-CCCCeeeeEecC
Q psy11036 213 KIYEMVN------FSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 213 ~iwd~~~------~~~~~~~~-~~~~v~~~~~sp 239 (239)
++||+.. .+++..+. |...+..++|+|
T Consensus 685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~ 718 (793)
T PLN00181 685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV 718 (793)
T ss_pred EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC
Confidence 9999974 35677776 777888888876
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-29 Score=192.01 Aligned_cols=196 Identities=20% Similarity=0.235 Sum_probs=174.0
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c-CC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N-HG 84 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~-~~ 84 (239)
...|++|+..+++.......+. ..|+++.|++ ++.+|++|..+|.|.|||..+.+.+..+ . |.
T Consensus 196 g~~vylW~~~s~~v~~l~~~~~--------------~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 196 GQSVYLWSASSGSVTELCSFGE--------------ELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred cceEEEEecCCCceEEeEecCC--------------CceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 3589999999988666555556 8999999999 8999999999999999999998888877 4 89
Q ss_pred CCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeee
Q psy11036 85 SPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSF 163 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 163 (239)
..|-+++|. +..+.+|+ ++.|..+|++........+.+|...|..++|++|+.++|+|+.|+.+.|||..
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~------- 331 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL------- 331 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC-------
Confidence 999999998 66777777 89999999995444445588999999999999999999999999999999986
Q ss_pred ecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEc--CCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 164 TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISAS--LDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 164 ~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
..++...+..|..+|.+++|+| ...+||+|+ .|+.|++||..+++.+..+...+.|.+|.|+|
T Consensus 332 -------------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk 397 (484)
T KOG0305|consen 332 -------------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSK 397 (484)
T ss_pred -------------CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcC
Confidence 5677888899999999999999 567899876 59999999999999999999999999999986
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-27 Score=178.77 Aligned_cols=194 Identities=25% Similarity=0.427 Sum_probs=168.7
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
++|.+++|+| +++++++++.||.+++|++.+++....+ .|...+..+.|+|+++.+++++ ++.+.+|++. ..+...
T Consensus 10 ~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~-~~~~~~ 87 (289)
T cd00200 10 GGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE-TGECVR 87 (289)
T ss_pred CCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC-cccceE
Confidence 9999999999 7899999999999999999988776666 5788889999999998888888 8999999998 667777
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee---------------------ec-ceeEEEEEccCC
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF---------------------TG-GLDVCIWDMLGG 177 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~---------------------~~-~~~i~~~d~~~~ 177 (239)
.+..|...+.++.|+++++++++++.|+.+.+||++ .+....+ .. ++.+.+||++.
T Consensus 88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~- 166 (289)
T cd00200 88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT- 166 (289)
T ss_pred EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc-
Confidence 888899999999999998888888889999999987 4433322 12 55699999875
Q ss_pred CEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEe-cCCCCeeeeEecC
Q psy11036 178 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSIDVSM 239 (239)
Q Consensus 178 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp 239 (239)
.+....+..|...+.++.|+|+++.+++++.|+.|++||+.+++.+..+ .+..++.+++|+|
T Consensus 167 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 167 GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred cccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC
Confidence 5667777888889999999999999999999999999999999999988 4778999999986
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=186.30 Aligned_cols=142 Identities=17% Similarity=0.322 Sum_probs=125.2
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee---
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM--- 79 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~--- 79 (239)
+.++|.+|++||+++++++.++-.|. +.|..+.|+. .++++++.|.++.+||+.....+.
T Consensus 252 sGSSDsTvrvWDv~tge~l~tlihHc--------------eaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rr 314 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLNTLIHHC--------------EAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRR 314 (499)
T ss_pred ecCCCceEEEEeccCCchhhHHhhhc--------------ceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHH
Confidence 34689999999999999999999999 9999999964 699999999999999998776433
Q ss_pred ee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-
Q psy11036 80 SV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT- 156 (239)
Q Consensus 80 ~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~- 156 (239)
.+ +|...|+.+.|+ .+++++++ |.+|++|++. +.+.+.++.+|...|-|+.+ .++++++|+.|.+|++||+.
T Consensus 315 VLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s-t~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS-TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred HHhhhhhheeeeccc--cceEEEecCCceEEEEecc-ceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccc
Confidence 22 799999999996 56888888 8999999998 89999999999999999888 68999999999999999999
Q ss_pred cceEeeeecc
Q psy11036 157 LKTVSSFTGG 166 (239)
Q Consensus 157 ~~~~~~~~~~ 166 (239)
+.++..+.|.
T Consensus 390 G~cLRvLeGH 399 (499)
T KOG0281|consen 390 GACLRVLEGH 399 (499)
T ss_pred cHHHHHHhch
Confidence 7777766443
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=169.21 Aligned_cols=180 Identities=18% Similarity=0.305 Sum_probs=160.8
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
++|..+.|+- ++++.++++.|.+|++|+...+..++++ +|...|..++.+.+...+++++ |..+.+||+. +++..+
T Consensus 18 gaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~-TGkv~R 95 (307)
T KOG0316|consen 18 GAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN-TGKVDR 95 (307)
T ss_pred cceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc-cCeeee
Confidence 9999999999 8999999999999999999999999999 7999999999999998888888 8999999999 999999
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc---cceEeee--------------------ecceeEEEEEccCC
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT---LKTVSSF--------------------TGGLDVCIWDMLGG 177 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~--------------------~~~~~i~~~d~~~~ 177 (239)
++.+|.+.|+.++|+.+...+++|+.|.++++||.+ .++++.+ +.++.++.||++.+
T Consensus 96 r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G 175 (307)
T KOG0316|consen 96 RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKG 175 (307)
T ss_pred ecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecc
Confidence 999999999999999999999999999999999998 4444444 23566999999874
Q ss_pred CEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 178 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 178 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
+....+- ..+|++++|++|++..+.++.|+++++.|-.+|+.++.++
T Consensus 176 -~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk 222 (307)
T KOG0316|consen 176 -TLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK 222 (307)
T ss_pred -eeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc
Confidence 4433333 4689999999999999999999999999999999988776
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-28 Score=181.91 Aligned_cols=181 Identities=38% Similarity=0.651 Sum_probs=161.7
Q ss_pred CCCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC-Cceee
Q psy11036 2 SHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP-DPVMS 80 (239)
Q Consensus 2 s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~-~~~~~ 80 (239)
+..+.|+.+++||+.+......+.+|+ +.|.|.+|+|.++++++||++||.|++||++.. ..+..
T Consensus 127 ~s~sDd~v~k~~d~s~a~v~~~l~~ht--------------DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e 192 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYVQAELSGHT--------------DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE 192 (487)
T ss_pred EecCCCceEEEEEcCCcEEEEEecCCc--------------ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE
Confidence 445678999999999988766899999 999999999988889999999999999999987 67778
Q ss_pred ecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceE
Q psy11036 81 VNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTV 160 (239)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 160 (239)
+.|..+|..+.+-|.|..+++++...+++||+...++.+..+..|...|+|+++..++..|++++-|+.|++||+.
T Consensus 193 lnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t---- 268 (487)
T KOG0310|consen 193 LNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT---- 268 (487)
T ss_pred ecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEcc----
Confidence 8999999999999999999999999999999997778887777799999999999999999999999999999976
Q ss_pred eeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 161 SSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 161 ~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
+.+.++.+.- .++|.+++.+|+++.++.|..||.+.+=+.
T Consensus 269 ----------------~~Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 269 ----------------NYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ----------------ceEEEEeeec-ccceeeEEecCCCceEEEecccceeeeehh
Confidence 3555555543 789999999999999999999998877644
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-29 Score=195.32 Aligned_cols=183 Identities=20% Similarity=0.294 Sum_probs=163.8
Q ss_pred CCCCCCCCEEEEeeCCCcceee---------eeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEe
Q psy11036 1 MSHDLPILIVALWDIPSEAQVS---------TFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYD 71 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 71 (239)
|.+-+.|.++++|++...+... +-..|. ..|.|++.+| +..+++|||.|++.++|+
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd--------------KdIN~Vaia~-ndkLiAT~SqDktaKiW~ 491 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD--------------KDINCVAIAP-NDKLIATGSQDKTAKIWD 491 (775)
T ss_pred EEEecCCceEEEecCCCcccccccceehhhHHHHhhc--------------ccccceEecC-CCceEEecccccceeeec
Confidence 3456789999999997622211 223455 8899999999 899999999999999999
Q ss_pred CCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCe
Q psy11036 72 TRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHH 149 (239)
Q Consensus 72 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 149 (239)
++......++ +|...|.++.|+|..+.+++++ |.+|+||.+. +...++++.+|...|....|-.+|+.|++++.||.
T Consensus 492 le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is-~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl 570 (775)
T KOG0319|consen 492 LEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS-TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL 570 (775)
T ss_pred ccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec-cceeeeeecCccceeEeeeeeeCCcEEEeccCCCc
Confidence 9988888888 7999999999999999999998 8999999999 99999999999999999999999999999999999
Q ss_pred EEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 150 AKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 150 i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
+++|+++ +.+++.++..|...|.+++.+|....++||+.||.|.+|.-.+
T Consensus 571 iKlWnik--------------------t~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 571 IKLWNIK--------------------TNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EEEEecc--------------------chhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999998 5777888899999999999999999999999999999996543
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=171.43 Aligned_cols=183 Identities=20% Similarity=0.280 Sum_probs=159.7
Q ss_pred CCCCCEEEEeeCCCc-ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec
Q psy11036 4 DLPILIVALWDIPSE-AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 82 (239)
.|.++.+||||++.. .+..++.+|. +.|..+.|.. ..+.+++++.|++||+||.++++.+..+.
T Consensus 118 gg~ekllrvfdln~p~App~E~~ght--------------g~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~ 182 (334)
T KOG0278|consen 118 GGQEKLLRVFDLNRPKAPPKEISGHT--------------GGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE 182 (334)
T ss_pred cchHHHhhhhhccCCCCCchhhcCCC--------------CcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe
Confidence 356688999998764 4567888998 9999999999 78888888999999999999999999999
Q ss_pred CCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEee
Q psy11036 83 HGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSS 162 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 162 (239)
.+.+|+++..+++|+++..+..+.|.+||.. ...+++..+ ....|.+.+++|+...+++|++|..++.||..
T Consensus 183 ~~s~VtSlEvs~dG~ilTia~gssV~Fwdak-sf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~------ 254 (334)
T KOG0278|consen 183 FNSPVTSLEVSQDGRILTIAYGSSVKFWDAK-SFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYN------ 254 (334)
T ss_pred cCCCCcceeeccCCCEEEEecCceeEEeccc-cccceeecc-CccccccccccCCCceEEecCcceEEEEEecc------
Confidence 9999999999999999999999999999998 777777666 34568999999999999999999999999988
Q ss_pred eecceeEEEEEccCCCEEEEEE-ecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeee
Q psy11036 163 FTGGLDVCIWDMLGGGKLLHKF-TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPV 223 (239)
Q Consensus 163 ~~~~~~i~~~d~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~ 223 (239)
+++.+..+ ++|.++|.++.|+|+|...++||.||+|++|.+..++..
T Consensus 255 --------------TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 255 --------------TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred --------------CCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 34444443 899999999999999999999999999999998665543
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-30 Score=185.16 Aligned_cols=173 Identities=24% Similarity=0.379 Sum_probs=156.4
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee---------cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV---------NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~ 112 (239)
.-+.|..|+| ++++|++|+-||.|.+||..+|+....+ -+..+|.|+.|+.+...+++|+ ||.|++|.+
T Consensus 214 Sh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 214 SHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred cchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 6788999999 8999999999999999999998765443 2678999999999999999999 899999999
Q ss_pred cCCCeEEEEEe-ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcE
Q psy11036 113 LGGGKLLHKFT-CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTV 191 (239)
Q Consensus 113 ~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v 191 (239)
+ +++.++.+. +|...|+++.|+.|+..+++++.|.++++.-++ .++++.++++|.+-|
T Consensus 293 ~-tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK--------------------SGK~LKEfrGHsSyv 351 (508)
T KOG0275|consen 293 E-TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK--------------------SGKCLKEFRGHSSYV 351 (508)
T ss_pred e-cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc--------------------cchhHHHhcCccccc
Confidence 9 888888887 899999999999999999999999999999888 577777789999999
Q ss_pred EEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec---CCCCeeeeEe
Q psy11036 192 TSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD---YPSPVLSIDV 237 (239)
Q Consensus 192 ~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~ 237 (239)
+...|.+||..++++|.||+|++|+.++.+++.+++ .+-+|+++-.
T Consensus 352 n~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~ 400 (508)
T KOG0275|consen 352 NEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVIL 400 (508)
T ss_pred cceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEE
Confidence 999999999999999999999999999999999887 3336776654
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=190.43 Aligned_cols=212 Identities=25% Similarity=0.351 Sum_probs=185.8
Q ss_pred CCCCCEEEEeeCCCcceeee-eeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 4 DLPILIVALWDIPSEAQVST-FTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
...+++|++||..++..+.. +.+|. +.|.++++.. .+.+|++|+.|.++++||..++++...+
T Consensus 224 ~s~~~tl~~~~~~~~~~i~~~l~GH~--------------g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~ 288 (537)
T KOG0274|consen 224 GSDDSTLHLWDLNNGYLILTRLVGHF--------------GGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQ 288 (537)
T ss_pred cCCCceeEEeecccceEEEeeccCCC--------------CCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEec
Confidence 45678999999999998888 99999 9999999987 7899999999999999999999999999
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cce
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 159 (239)
+|.+.+.++... ...+++|+ |.+|++|+++ ++..+..+.+|.++|.++..+ +.++++|+.|++|++||+. +++
T Consensus 289 gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c 363 (537)
T KOG0274|consen 289 GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC 363 (537)
T ss_pred CCCceEEEEEcc--CceEeeccCCceEEEEecc-CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee
Confidence 699999998775 34566666 8999999999 889999999999999999996 7899999999999999998 787
Q ss_pred Eeeeec---------------------ceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 160 VSSFTG---------------------GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 160 ~~~~~~---------------------~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
+.++.| +..|++||+++..+++..+.+|..-+..+.+ .+++|++++.|++|++||..
T Consensus 364 l~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 364 LKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred eeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecc
Confidence 777633 2239999999854899999999998876655 47899999999999999999
Q ss_pred CCeeeEEecCC--CCeeeeEe
Q psy11036 219 NFSPVHTLDYP--SPVLSIDV 237 (239)
Q Consensus 219 ~~~~~~~~~~~--~~v~~~~~ 237 (239)
++++++.+... ..|.++++
T Consensus 442 ~~~~~~~~~~~~~~~v~~l~~ 462 (537)
T KOG0274|consen 442 EGECLRTLEGRHVGGVSALAL 462 (537)
T ss_pred cCceeeeeccCCcccEEEeec
Confidence 99999999853 67777765
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=170.03 Aligned_cols=198 Identities=21% Similarity=0.402 Sum_probs=158.3
Q ss_pred cCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC-CCceee--ecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccC
Q psy11036 39 STPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS-PDPVMS--VNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLG 114 (239)
Q Consensus 39 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~ 114 (239)
+++.+.|.+++|+|+...++++++.|++||+|++.. +..+-+ ..|.++|.+++|+.+|..+++++ |+.+++||+.
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~- 102 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA- 102 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc-
Confidence 345589999999997777888999999999999976 343332 26999999999999999999998 9999999998
Q ss_pred CCeEEEEEeccCCceEEEEEcCCCC--EEEEEecCCeEEEEEcc-cceEeee-------------------ecceeEEEE
Q psy11036 115 GGKLLHKFTCHHKTVTSLCLASGGK--RLISASLDHHAKIYEMT-LKTVSSF-------------------TGGLDVCIW 172 (239)
Q Consensus 115 ~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~d~~i~i~d~~-~~~~~~~-------------------~~~~~i~~~ 172 (239)
++ ....+..|.++|..+.|-+... .|++|+.|.+++.||++ ...+.++ +++..|.+|
T Consensus 103 S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 103 SG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVY 181 (347)
T ss_pred CC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEE
Confidence 55 5666778999999999987554 89999999999999999 5554443 344555566
Q ss_pred EccCCC---------------------------------------------EEEEEEecccC---------cEEEEEEcc
Q psy11036 173 DMLGGG---------------------------------------------KLLHKFTCHHK---------TVTSLCLAS 198 (239)
Q Consensus 173 d~~~~~---------------------------------------------~~~~~~~~h~~---------~v~~~~~s~ 198 (239)
++++.. ..-..++.|.. +|.+++|+|
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence 553221 11223455552 578899999
Q ss_pred CCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEec
Q psy11036 199 GGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 199 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s 238 (239)
....|+|++.||+..+||-.....+++.+ ++.+|++.+|+
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn 302 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFN 302 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEec
Confidence 99999999999999999998888888876 88899999886
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=180.12 Aligned_cols=200 Identities=23% Similarity=0.297 Sum_probs=166.9
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecC
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 83 (239)
.+.|+.+++|++++.+...++.+|. +.|+++.|.. ....+++|+.|.+++.||+....+..++-.
T Consensus 237 as~d~~~r~Wnvd~~r~~~TLsGHt--------------dkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~ 301 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDSLRLRHTLSGHT--------------DKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLP 301 (459)
T ss_pred ecCCCceeeeeccchhhhhhhcccc--------------cceeeehhhc-cccceeeccccchhhhhhhhhhheeccccc
Confidence 4678999999999999999999999 9999999998 566699999999999999999888888766
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEe
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVS 161 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~ 161 (239)
.+.+..|..+ ...++++. |+.|++||.+ ...+...+..+. .|+++..++++..+++++.|.++.+.|++ .+...
T Consensus 302 ~S~cnDI~~~--~~~~~SgH~DkkvRfwD~R-s~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~ 377 (459)
T KOG0288|consen 302 GSQCNDIVCS--ISDVISGHFDKKVRFWDIR-SADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ 377 (459)
T ss_pred cccccceEec--ceeeeecccccceEEEecc-CCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEE
Confidence 6777777776 55666776 8999999999 777888887654 89999999999999999999999999999 33333
Q ss_pred eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec--C-CCCeeeeEec
Q psy11036 162 SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD--Y-PSPVLSIDVS 238 (239)
Q Consensus 162 ~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~-~~~v~~~~~s 238 (239)
.++.. . +. .....+.+.|||++.|+++||.||.|+||++.++++...+. + +..|++++|+
T Consensus 378 ~~sA~---------------g-~k-~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~ 440 (459)
T KOG0288|consen 378 TFSAE---------------G-FK-CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN 440 (459)
T ss_pred Eeecc---------------c-cc-cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc
Confidence 33110 0 01 12348889999999999999999999999999999998887 2 2369999998
Q ss_pred C
Q psy11036 239 M 239 (239)
Q Consensus 239 p 239 (239)
|
T Consensus 441 ~ 441 (459)
T KOG0288|consen 441 P 441 (459)
T ss_pred C
Confidence 7
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=179.66 Aligned_cols=218 Identities=20% Similarity=0.310 Sum_probs=177.0
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGS 85 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~ 85 (239)
...|.+|.+...........-. ++|.+++-+| .|.+|+.|+..|.+++|.+.+|..+..+ .|-.
T Consensus 60 rp~l~vw~i~k~~~~~q~~v~P--------------g~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ 124 (476)
T KOG0646|consen 60 RPLLHVWEILKKDQVVQYIVLP--------------GPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQ 124 (476)
T ss_pred CccccccccCchhhhhhhcccc--------------cceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhcc
Confidence 3466777765544333222222 8899999999 8999999889999999999999998887 7999
Q ss_pred CEEEEEEecCCcEEEEeC-CCcEEEEEccC--------CCeEEEEEeccCCceEEEEEcCCC--CEEEEEecCCeEEEEE
Q psy11036 86 PVESVLCLPSGGIFVTGG-GLDVCIWDMLG--------GGKLLHKFTCHHKTVTSLCLASGG--KRLISASLDHHAKIYE 154 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~--------~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~i~d 154 (239)
.|+|+.|+-||.++++|+ ||.|.+|.+.. ..++++.+..|.-+|+++...+.| ..+++++.|.++++||
T Consensus 125 ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd 204 (476)
T KOG0646|consen 125 SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD 204 (476)
T ss_pred ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence 999999999999999999 89999998741 346788899999999999987754 6899999999999999
Q ss_pred cc-cceEeee-------------------ec--ceeEEEEEccCC---------------CEEEEEEecccC--cEEEEE
Q psy11036 155 MT-LKTVSSF-------------------TG--GLDVCIWDMLGG---------------GKLLHKFTCHHK--TVTSLC 195 (239)
Q Consensus 155 ~~-~~~~~~~-------------------~~--~~~i~~~d~~~~---------------~~~~~~~~~h~~--~v~~~~ 195 (239)
+. +..+.++ .| .+.|.+.++... ......+.+|.+ +|+|++
T Consensus 205 lS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 205 LSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA 284 (476)
T ss_pred eccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE
Confidence 98 6665554 22 233444343221 234556778888 999999
Q ss_pred EccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 196 LASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 196 ~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
++-||.+|++|+.||+|+|||+.+.++++++. ..++|+.+.+.|
T Consensus 285 is~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred EecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 99999999999999999999999999999999 889999998855
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=190.60 Aligned_cols=202 Identities=20% Similarity=0.346 Sum_probs=173.4
Q ss_pred CCCCCCCEEEEeeCCCcc------eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC
Q psy11036 2 SHDLPILIVALWDIPSEA------QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP 75 (239)
Q Consensus 2 s~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 75 (239)
-+.|+||.|++|+..... ....++.|. +.|..++... +++.|++++.|-+|++|+...+
T Consensus 41 fTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs--------------DWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 41 FTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS--------------DWVNDIILCG-NGKTLISASSDTTVKVWNAHKD 105 (735)
T ss_pred EecCCCceEEEeccccccCCcccchhhhhhhhH--------------hHHhhHHhhc-CCCceEEecCCceEEEeecccC
Confidence 356899999999985432 256778888 9999999998 7889999999999999999877
Q ss_pred --Cceeee-cCCCCEEEEEE-ecCCcEEEEeC-CCcEEEEEccCCC--eEE--------EEEe-ccCCceEEEEEcCCCC
Q psy11036 76 --DPVMSV-NHGSPVESVLC-LPSGGIFVTGG-GLDVCIWDMLGGG--KLL--------HKFT-CHHKTVTSLCLASGGK 139 (239)
Q Consensus 76 --~~~~~~-~~~~~v~~~~~-~~~~~~l~~~~-~~~i~~~d~~~~~--~~~--------~~~~-~~~~~i~~i~~~~~~~ 139 (239)
-+..++ .|..-|.|+++ .++...+++|+ |+.|.+||+. .+ +.+ ..+. ++..+|.+++.++.|.
T Consensus 106 ~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin-~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t 184 (735)
T KOG0308|consen 106 NTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN-TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT 184 (735)
T ss_pred cchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc-CcchhhhhhccccccccCCCCCccceeeeecCCcce
Confidence 455666 59999999999 77888888888 9999999998 33 122 2223 7788999999999999
Q ss_pred EEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 140 RLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 140 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
.+++|+..+.+++||.+ ..+.+..+++|...|..+..++||..++++|.||+|++||+..
T Consensus 185 ~ivsGgtek~lr~wDpr--------------------t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPR--------------------TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred EEEecCcccceEEeccc--------------------cccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 99999999999999988 4666777789999999999999999999999999999999999
Q ss_pred CeeeEEec-CCCCeeeeEecC
Q psy11036 220 FSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 220 ~~~~~~~~-~~~~v~~~~~sp 239 (239)
.+++.++. |...|+++.-+|
T Consensus 245 QrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 245 QRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred cceeeeEEeccCceEEEeeCC
Confidence 99999998 888899988765
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-28 Score=192.42 Aligned_cols=181 Identities=21% Similarity=0.354 Sum_probs=149.6
Q ss_pred ceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEec-CCcEEEEeC-CCcEEEEE
Q psy11036 34 PLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLP-SGGIFVTGG-GLDVCIWD 111 (239)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~~~i~~~d 111 (239)
|+..+..|.+.|.++.|+. .++|++++.|.+||+|++...+++..|.|..-|+|++|+| |.+++++|+ |+.++||+
T Consensus 361 P~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWs 438 (712)
T KOG0283|consen 361 PFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWS 438 (712)
T ss_pred chhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEee
Confidence 4455556679999999996 6899999999999999999999999999999999999999 788999999 99999999
Q ss_pred ccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEe-ee---------------------------
Q psy11036 112 MLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVS-SF--------------------------- 163 (239)
Q Consensus 112 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~--------------------------- 163 (239)
+. ..+ +.....-..-|++++|.|||+..+.|+.+|.+++|+..+..+. ..
T Consensus 439 I~-d~~-Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~ 516 (712)
T KOG0283|consen 439 IS-DKK-VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDE 516 (712)
T ss_pred cC-cCe-eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCe
Confidence 96 444 4444445688999999999999999999999999998732221 11
Q ss_pred ----ecceeEEEEEccCCCEEEEEEecccC--cEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 164 ----TGGLDVCIWDMLGGGKLLHKFTCHHK--TVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 164 ----~~~~~i~~~d~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
+.+..|+|+|.+. ..++..++++.. .-....|+.||++|+++++|..|+||++..
T Consensus 517 vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 517 VLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred EEEecCCCceEEEeccc-hhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 2345599999865 567777776543 235678999999999999999999999844
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=192.38 Aligned_cols=222 Identities=20% Similarity=0.262 Sum_probs=180.1
Q ss_pred CCCCC--CCCEEEEeeCCC------------cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCe
Q psy11036 1 MSHDL--PILIVALWDIPS------------EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKT 66 (239)
Q Consensus 1 fs~~~--~dg~i~vwd~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 66 (239)
|++.| .||.++||+.+. .+.+.+...|. +.|.|+.|+| ++.+||+|++|+.
T Consensus 28 ~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~--------------~sv~CVR~S~-dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 28 FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD--------------GSVNCVRFSP-DGSYLASGSDDRL 92 (942)
T ss_pred EecCCccccccceeeccccccchhhhhhcccchhheeecccc--------------CceeEEEECC-CCCeEeeccCcce
Confidence 34455 788888998743 12344555666 9999999999 8999999999999
Q ss_pred EEEEeCCC----------C--------Cceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccC
Q psy11036 67 VNVYDTRS----------P--------DPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHH 126 (239)
Q Consensus 67 v~vw~~~~----------~--------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~ 126 (239)
|.+|.... + +.+..+ +|...|..++|+|++.++++++ |++|.+|+.+ +.+.+..+.+|.
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~-tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK-TFELLKVLRGHQ 171 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc-cceeeeeeeccc
Confidence 99999772 0 123344 6999999999999999999999 9999999999 779999999999
Q ss_pred CceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeee--------------------------------cceeEEEEE
Q psy11036 127 KTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFT--------------------------------GGLDVCIWD 173 (239)
Q Consensus 127 ~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~--------------------------------~~~~i~~~d 173 (239)
+.|..+.|.|-|++||+-+.|++|++|++. ......++ +...+.+.+
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 999999999999999999999999999965 33333331 122255555
Q ss_pred ccCCCEEEEEEecccCcEEEEEEccC-----CC------------eEEEEcCCceEEEEEccCCeeeEEec--CCCCeee
Q psy11036 174 MLGGGKLLHKFTCHHKTVTSLCLASG-----GK------------RLISASLDHHAKIYEMVNFSPVHTLD--YPSPVLS 234 (239)
Q Consensus 174 ~~~~~~~~~~~~~h~~~v~~~~~s~~-----~~------------~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~v~~ 234 (239)
- .+...-..+-+|..++.+++|+|. .+ .+|+||.|++|.||.....+|+..+. ...+|.+
T Consensus 252 R-~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~D 330 (942)
T KOG0973|consen 252 R-GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVD 330 (942)
T ss_pred c-CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceee
Confidence 3 335556678899999999999982 22 57899999999999999999998887 6789999
Q ss_pred eEecC
Q psy11036 235 IDVSM 239 (239)
Q Consensus 235 ~~~sp 239 (239)
|+|+|
T Consensus 331 msWsp 335 (942)
T KOG0973|consen 331 MSWSP 335 (942)
T ss_pred eeEcC
Confidence 99997
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-28 Score=179.56 Aligned_cols=202 Identities=18% Similarity=0.223 Sum_probs=160.1
Q ss_pred CCCCEEEEeeCCCcc----------eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC
Q psy11036 5 LPILIVALWDIPSEA----------QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS 74 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 74 (239)
...+.|+|||..+.. +-..+.+|. +.-+++.|+++..-.|++++.|++|++||+..
T Consensus 144 t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~--------------~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~ 209 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE--------------KEGYGLSWNRQQEGTLLSGSDDHTICLWDINA 209 (422)
T ss_pred CCCCCEEEEEeccCCCcccccccCCCceEEEeec--------------ccccccccccccceeEeeccCCCcEEEEeccc
Confidence 456899999985422 122677887 66788999998888999999999999999964
Q ss_pred CCc-------eeee-cCCCCEEEEEEecC-CcEEEEeC-CCcEEEEEccC-CCeEEEEEeccCCceEEEEEcC-CCCEEE
Q psy11036 75 PDP-------VMSV-NHGSPVESVLCLPS-GGIFVTGG-GLDVCIWDMLG-GGKLLHKFTCHHKTVTSLCLAS-GGKRLI 142 (239)
Q Consensus 75 ~~~-------~~~~-~~~~~v~~~~~~~~-~~~l~~~~-~~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~-~~~~l~ 142 (239)
... ...+ .|...|..++|++. ...+++++ |+.+.|||+|. ..++.+...+|.++|.|++|+| ++..||
T Consensus 210 ~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilA 289 (422)
T KOG0264|consen 210 ESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILA 289 (422)
T ss_pred cccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEE
Confidence 432 2233 69999999999994 45566666 69999999995 4556677889999999999999 557899
Q ss_pred EEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC-CCeEEEEcCCceEEEEEccCCe
Q psy11036 143 SASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG-GKRLISASLDHHAKIYEMVNFS 221 (239)
Q Consensus 143 ~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~ 221 (239)
+|+.|++|.+||+| +-.+++..+.+|...|..+.|||+ ...||+++.|+.+.+||+..-.
T Consensus 290 T~S~D~tV~LwDlR-------------------nL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 290 TGSADKTVALWDLR-------------------NLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred eccCCCcEEEeech-------------------hcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 99999999999998 224577888999999999999995 5688999999999999996421
Q ss_pred --------------eeEEec-CCCCeeeeEecC
Q psy11036 222 --------------PVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 222 --------------~~~~~~-~~~~v~~~~~sp 239 (239)
++..-. |...|..++|+|
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp 383 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP 383 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCC
Confidence 122222 667899999987
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=185.92 Aligned_cols=194 Identities=19% Similarity=0.289 Sum_probs=176.5
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
+.|.++.++| ....++++-.+|.|.|||.+++..++.+. ...||.+..|-+..+++++|+ |..|++|+.. +.+.++
T Consensus 14 dRVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn-t~ekV~ 91 (794)
T KOG0276|consen 14 DRVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN-TGEKVK 91 (794)
T ss_pred CceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc-cceeeE
Confidence 8999999999 78899999999999999999999999984 678999999999999999999 6999999999 999999
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc--cceEeeeec-----------------------ceeEEEEEcc
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT--LKTVSSFTG-----------------------GLDVCIWDML 175 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~-----------------------~~~i~~~d~~ 175 (239)
.+.+|..-|.+++.+|...++++++.|-+|++||.+ -.+.+++.| +..+++|.+.
T Consensus 92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg 171 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG 171 (794)
T ss_pred EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcC
Confidence 999999999999999999999999999999999998 344444432 4559999987
Q ss_pred CCCEEEEEEecccCcEEEEEEcc--CCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 176 GGGKLLHKFTCHHKTVTSLCLAS--GGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 176 ~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
. ..+..++++|...|.++.|-+ |..+|+||++|..|+|||..+..++++++ |...|..+.|+|
T Consensus 172 s-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 172 S-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP 237 (794)
T ss_pred C-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence 6 677889999999999999987 44699999999999999999999999999 888999999998
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=184.93 Aligned_cols=197 Identities=22% Similarity=0.352 Sum_probs=173.2
Q ss_pred CCCEEEEeeCCCcceeeeeeC-CceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee-e-c
Q psy11036 6 PILIVALWDIPSEAQVSTFTN-HTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS-V-N 82 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~-~-~ 82 (239)
.+|.|.|||..+.+.+..+.+ |. ..|-+++|. ...+.+|+.|+.|..+|++..+.... + .
T Consensus 237 ~~g~v~iwD~~~~k~~~~~~~~h~--------------~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~ 299 (484)
T KOG0305|consen 237 SDGTVQIWDVKEQKKTRTLRGSHA--------------SRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQG 299 (484)
T ss_pred cCCeEEEEehhhccccccccCCcC--------------ceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhc
Confidence 469999999999999999999 87 999999996 57999999999999999998776554 5 6
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-CCCEEEEEe--cCCeEEEEEcc-c
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISAS--LDHHAKIYEMT-L 157 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~--~d~~i~i~d~~-~ 157 (239)
|...|..++|++++.++++|+ |+.+.|||.. ..++...+..|...|..++|+| ....||+|+ .|+.|++||.. +
T Consensus 300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~-~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL-SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred ccceeeeeEECCCCCeeccCCCccceEeccCC-CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 999999999999999999999 8999999997 7788888999999999999999 557888865 69999999998 5
Q ss_pred ceEeee-----------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEE
Q psy11036 158 KTVSSF-----------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 214 (239)
Q Consensus 158 ~~~~~~-----------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~i 214 (239)
..+..+ .+..+|.+|+..+ ...+..+.+|...|..++++|||..+++|+.|.++++
T Consensus 379 ~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 379 ARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRF 457 (484)
T ss_pred cEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEe
Confidence 555544 2344589999877 7788899999999999999999999999999999999
Q ss_pred EEccCCe
Q psy11036 215 YEMVNFS 221 (239)
Q Consensus 215 wd~~~~~ 221 (239)
|++-...
T Consensus 458 w~~f~~~ 464 (484)
T KOG0305|consen 458 WNLFDER 464 (484)
T ss_pred ccccCCC
Confidence 9997643
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-29 Score=196.20 Aligned_cols=199 Identities=25% Similarity=0.379 Sum_probs=179.4
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
|.|-.+-+|.+.....+..|.+|. .+|.++.|++ ...+|++|+.+|+|++||++..+.++++ +|
T Consensus 47 g~~~k~~L~~i~kp~~i~S~~~he--------------spIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh 111 (825)
T KOG0267|consen 47 GEDEKVNLWAIGKPNAITSLTGHE--------------SPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGH 111 (825)
T ss_pred CCceeeccccccCCchhheeeccC--------------CcceeeecCc-chhhhcccccCCceeeeehhhhhhhhhhhcc
Confidence 345566688877666667788898 9999999999 7889999999999999999999988888 89
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEee
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSS 162 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 162 (239)
...+..+.|+|-+.+.+.++ |..+++||++ ...+.+.+.+|...+..++|+|+|++++.++.|..++|||..
T Consensus 112 ~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~------ 184 (825)
T KOG0267|consen 112 LLNITSVDFHPYGEFFASGSTDTDLKIWDIR-KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT------ 184 (825)
T ss_pred ccCcceeeeccceEEeccccccccceehhhh-ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc------
Confidence 99999999999999998888 8999999998 677888899999999999999999999999999999999987
Q ss_pred eecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 163 FTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 163 ~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
.++....|..|...+..+.|+|..-++++||.|+++++||+++.+.+.... ....|.+.+|+|
T Consensus 185 --------------agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 185 --------------AGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP 248 (825)
T ss_pred --------------ccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC
Confidence 466777779999999999999999999999999999999999999988887 566899999876
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-27 Score=188.27 Aligned_cols=198 Identities=27% Similarity=0.430 Sum_probs=175.7
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-C
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-H 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~ 83 (239)
+.|.++++||..+|++..++.+|. +.|.++...+ .++++|+.|.+|++|++.++..+..+. |
T Consensus 268 S~D~t~rvWd~~sg~C~~~l~gh~--------------stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h 330 (537)
T KOG0274|consen 268 STDKTERVWDCSTGECTHSLQGHT--------------SSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGH 330 (537)
T ss_pred ecCCcEEeEecCCCcEEEEecCCC--------------ceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccc
Confidence 358999999999999999999999 9999998854 688899999999999999999999996 9
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-c-ceE
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-L-KTV 160 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~-~~~ 160 (239)
..+|.++..+ +.++++|+ |+.|++||+. ..+.++.+.+|...|.++.+.+. ..+++|+.|+.|++||++ . +++
T Consensus 331 ~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~ 406 (537)
T KOG0274|consen 331 TGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCI 406 (537)
T ss_pred cccEEEEEec--CCEEEEEecCceEEEEEhh-hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhh
Confidence 9999999998 77888888 8999999999 99999999999999999988655 899999999999999999 5 576
Q ss_pred eee--------------------ecceeEEEEEccCCCEEEEEEec-ccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 161 SSF--------------------TGGLDVCIWDMLGGGKLLHKFTC-HHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 161 ~~~--------------------~~~~~i~~~d~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
..+ ..++.|++||..+ ++++..+.+ |...|..+++. ...+++++.|+.+++||+++
T Consensus 407 ~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 407 HTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred hhhcCCcccccccccccceeEeccccccEEEeeccc-CceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 666 2355699999887 788888888 67889988886 56788899999999999999
Q ss_pred CeeeEEe
Q psy11036 220 FSPVHTL 226 (239)
Q Consensus 220 ~~~~~~~ 226 (239)
+++.+.+
T Consensus 484 ~~~~~~l 490 (537)
T KOG0274|consen 484 GTLIRTL 490 (537)
T ss_pred Cchhhhh
Confidence 9888765
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=169.39 Aligned_cols=172 Identities=19% Similarity=0.277 Sum_probs=155.8
Q ss_pred eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcE
Q psy11036 20 QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGI 98 (239)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 98 (239)
.+.+|..|+ +.|.+++.+| +.+++++|+.|..-.+|++.++.....+ +|+..|+++.|+.+|.+
T Consensus 56 S~~tF~~H~--------------~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgtl 120 (399)
T KOG0296|consen 56 SLVTFDKHT--------------DSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTL 120 (399)
T ss_pred ceeehhhcC--------------CceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceE
Confidence 345677787 9999999999 8999999999999999999999977777 89999999999999999
Q ss_pred EEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCC
Q psy11036 99 FVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGG 177 (239)
Q Consensus 99 l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~ 177 (239)
|++|+ +|.|++|+.. ++.....+...-..+.-+.|+|.+..|++|+.||.+-+|.+. .
T Consensus 121 LATGdmsG~v~v~~~s-tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip--------------------~ 179 (399)
T KOG0296|consen 121 LATGDMSGKVLVFKVS-TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP--------------------S 179 (399)
T ss_pred EEecCCCccEEEEEcc-cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC--------------------C
Confidence 99999 8999999998 666666665556778889999999999999999999999988 3
Q ss_pred CEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 178 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 178 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
+...+.+.+|..++++=.|.|+|+.++++..||+|++|+.++++++.++.
T Consensus 180 ~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 180 QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence 46677789999999999999999999999999999999999999999887
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=167.91 Aligned_cols=199 Identities=19% Similarity=0.327 Sum_probs=162.8
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC-----CCeEEEEeCC----
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY-----DKTVNVYDTR---- 73 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----dg~v~vw~~~---- 73 (239)
+.+.|.+++|||+++|+++..++.. .+|..+.|++ ++++++.... .+.|.++|++
T Consensus 69 TGSAD~t~kLWDv~tGk~la~~k~~---------------~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 69 TGSADQTAKLWDVETGKQLATWKTN---------------SPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred eccccceeEEEEcCCCcEEEEeecC---------------CeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChh
Confidence 3467899999999999999999887 7899999999 7887776543 3689999998
Q ss_pred ---CCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCC
Q psy11036 74 ---SPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH 148 (239)
Q Consensus 74 ---~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 148 (239)
..++...+ .+...++.+.|.|-++++++|. +|.|..||.++..+.+.....|...|+.++++|+..++++++.|.
T Consensus 133 ~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 133 DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCc
Confidence 34455555 4678999999999999999999 799999999955677788889999999999999999999999999
Q ss_pred eEEEEEcc-cceEeeeecce-----------------------------------eEEEEEccCCCEEEEEEecccCcEE
Q psy11036 149 HAKIYEMT-LKTVSSFTGGL-----------------------------------DVCIWDMLGGGKLLHKFTCHHKTVT 192 (239)
Q Consensus 149 ~i~i~d~~-~~~~~~~~~~~-----------------------------------~i~~~d~~~~~~~~~~~~~h~~~v~ 192 (239)
+-++||++ .+.+.++.... +.++|++.. .+.+..+++|-++|.
T Consensus 213 takl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~-eEEigrvkGHFGPIN 291 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF-EEEIGRVKGHFGPIN 291 (327)
T ss_pred cceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHH-HHHhccccccccCcc
Confidence 99999998 66666662111 111222111 234556789999999
Q ss_pred EEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 193 SLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 193 ~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
+++|+|+|+..++|+.||.||+.-+.
T Consensus 292 svAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 292 SVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred eeEECCCCcccccCCCCceEEEEEec
Confidence 99999999999999999999998654
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=165.54 Aligned_cols=198 Identities=21% Similarity=0.319 Sum_probs=164.2
Q ss_pred eeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCc--EEEEeC-CCcEEEE
Q psy11036 35 LMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGG--IFVTGG-GLDVCIW 110 (239)
Q Consensus 35 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~l~~~~-~~~i~~~ 110 (239)
...+++|.+.|++++. ++.++++|+.|.+|+|||+++......+ .|.+.|+++.|.+.-. .|++++ ||.|.+|
T Consensus 36 lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 3444455599999999 4689999999999999999988877766 7999999999998764 677777 7999999
Q ss_pred EccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee--------------------------
Q psy11036 111 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF-------------------------- 163 (239)
Q Consensus 111 d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~-------------------------- 163 (239)
+.. ....+..+++|.+.|+.++.+|.+++-++.+.|+.+++||+- ++.-...
T Consensus 113 ~~~-~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i 191 (362)
T KOG0294|consen 113 RVG-SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKI 191 (362)
T ss_pred EcC-CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEE
Confidence 998 789999999999999999999999999999999999999985 3211111
Q ss_pred --------------------------------ec--ceeEEEEEccCCCEEEEEEecccCcEEEEEE--ccCCCeEEEEc
Q psy11036 164 --------------------------------TG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL--ASGGKRLISAS 207 (239)
Q Consensus 164 --------------------------------~~--~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~s 207 (239)
+| +..+.+||... ..+...+.+|...|.++.+ .|++.+|+|+|
T Consensus 192 ~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaS 270 (362)
T KOG0294|consen 192 DIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTAS 270 (362)
T ss_pred EEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCceEEEEec
Confidence 12 23388888766 7888999999999999984 35678999999
Q ss_pred CCceEEEEEccCC-----eeeEEecCCCCeeeeEe
Q psy11036 208 LDHHAKIYEMVNF-----SPVHTLDYPSPVLSIDV 237 (239)
Q Consensus 208 ~d~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~ 237 (239)
.||.|+|||++.. +++..++....++|+..
T Consensus 271 SDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 271 SDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred cCceEEEEEccccccCCcceeEEeecCCccceeee
Confidence 9999999999765 57777777777777754
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=187.05 Aligned_cols=178 Identities=21% Similarity=0.273 Sum_probs=157.9
Q ss_pred CCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC-----CCc--------eeeecCCCCEEEEEEecCCcEEEEeC-CC
Q psy11036 40 TPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS-----PDP--------VMSVNHGSPVESVLCLPSGGIFVTGG-GL 105 (239)
Q Consensus 40 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~-----~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~-~~ 105 (239)
+|.+.|.+++.+| ++..+++|+.|.+|++||..- +.. .+++..+..|.|+.++|++++++++- |.
T Consensus 452 AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 452 AHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred ccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC
Confidence 4459999999999 899999999999999999641 111 13345678999999999999999998 99
Q ss_pred cEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEe
Q psy11036 106 DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFT 185 (239)
Q Consensus 106 ~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 185 (239)
++++|-++ +-+..-.+.+|.-||.|+..+||++.+++|+.|.+|++|-++ =+.+-.++-
T Consensus 531 TVkVyflD-tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd--------------------FGDCHKS~f 589 (888)
T KOG0306|consen 531 TVKVYFLD-TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD--------------------FGDCHKSFF 589 (888)
T ss_pred eEEEEEec-ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc--------------------cchhhhhhh
Confidence 99999998 788888899999999999999999999999999999999988 244455568
Q ss_pred cccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 186 CHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 186 ~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
+|...|.++.|-|....+++++.|+.|+-||-...+.++.+. |...|++++.+|
T Consensus 590 AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~ 644 (888)
T KOG0306|consen 590 AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP 644 (888)
T ss_pred cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC
Confidence 999999999999999999999999999999999999999998 888999999876
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-28 Score=183.99 Aligned_cols=173 Identities=20% Similarity=0.361 Sum_probs=154.8
Q ss_pred ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC-CCceeee-cCCCCEEEEEEecCC
Q psy11036 19 AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS-PDPVMSV-NHGSPVESVLCLPSG 96 (239)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~-~~~~~v~~~~~~~~~ 96 (239)
+.+.++.+|+ ..|+++.|.|-.+.+|++++.|+.|+||++.. +.+++++ +|..+|.+++|+++|
T Consensus 205 k~~~~~~gH~--------------kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g 270 (503)
T KOG0282|consen 205 KLSHNLSGHT--------------KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG 270 (503)
T ss_pred hheeeccCCc--------------cccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC
Confidence 3456777787 99999999997789999999999999999976 7888888 799999999999999
Q ss_pred cEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEEcccceEeeeecceeEEEEEc
Q psy11036 97 GIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDM 174 (239)
Q Consensus 97 ~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~ 174 (239)
..+++++ |+.+++||.+ +++.+..+. -...++++.|+|++ +.+++|+.|+.|+.||++
T Consensus 271 ~~fLS~sfD~~lKlwDtE-TG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR------------------ 330 (503)
T KOG0282|consen 271 TSFLSASFDRFLKLWDTE-TGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR------------------ 330 (503)
T ss_pred Ceeeeeecceeeeeeccc-cceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEecc------------------
Confidence 9999999 9999999999 899998887 45678999999988 889999999999999999
Q ss_pred cCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 175 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 175 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.++.++++..|-++|..+.|-++|+.++++++|+.++||+.+...+++.+.
T Consensus 331 --s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~ 381 (503)
T KOG0282|consen 331 --SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIA 381 (503)
T ss_pred --chHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhc
Confidence 455566668899999999999999999999999999999999887776554
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-27 Score=174.31 Aligned_cols=193 Identities=25% Similarity=0.358 Sum_probs=157.3
Q ss_pred CCCCCCEEEEeeCCCcc-------eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC-
Q psy11036 3 HDLPILIVALWDIPSEA-------QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS- 74 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~- 74 (239)
..+.|+.|++||+.... +...+.+|. +.|..++|++.+..++++++.|+.+.|||+++
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~--------------~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~ 260 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHE--------------DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN 260 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCC--------------cceehhhccccchhhheeecCCCeEEEEEcCCC
Confidence 34678999999986432 345677887 99999999998889999999999999999995
Q ss_pred -CCceeee-cCCCCEEEEEEec-CCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCC-CEEEEEecCCe
Q psy11036 75 -PDPVMSV-NHGSPVESVLCLP-SGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHH 149 (239)
Q Consensus 75 -~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~ 149 (239)
.++.... .|.+++.|++|+| ++..||+++ |++|.+||+|+-.++++++.+|...|.++.|+|.. ..|++++.|+.
T Consensus 261 ~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 261 TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc
Confidence 4444444 6899999999999 455667777 89999999998888999999999999999999955 68999999999
Q ss_pred EEEEEcc--cceEe-eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCe-EEEEcCCceEEEEEcc
Q psy11036 150 AKIYEMT--LKTVS-SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR-LISASLDHHAKIYEMV 218 (239)
Q Consensus 150 i~i~d~~--~~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~d~~i~iwd~~ 218 (239)
+.+||+. ++... ... -....+++..-.||...|..+.|+|+..+ ++|.+.|+.+.||++.
T Consensus 341 l~vWDls~ig~eq~~eda---------~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDA---------EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEEeccccccccChhhh---------ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999998 32211 110 01134556777899999999999998765 6788999999999985
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=182.37 Aligned_cols=136 Identities=24% Similarity=0.357 Sum_probs=118.6
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
.+.|.+.|||+++++.+.+++++. ..|+++.-+| -=..++.|..+|+|.++|++.++.+..+++.
T Consensus 179 s~~G~lql~Nvrt~K~v~~f~~~~--------------s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 179 SSQGRLQLWNVRTGKVVYTFQEFF--------------SRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred ecCCcEEEEEeccCcEEEEecccc--------------cceeEeccCC-cceEEEEeccCceEEEEEcccCcEEEEEEcc
Confidence 467999999999999999999998 9999999999 7889999999999999999999999999875
Q ss_pred -CCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEE-eccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 85 -SPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKF-TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 85 -~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
++|++++|.-||+.+.+.+ .|.+.+||++ ..+.+..+ ..|.+.|....|.|....+++.+.|+.+++|=.+
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe-~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLE-KKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcC-CCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence 9999999999998776666 4999999998 55555444 4788888899998888889999989888877443
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=168.14 Aligned_cols=187 Identities=22% Similarity=0.322 Sum_probs=156.3
Q ss_pred CCCCEEEEeeCCC------------c------ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCe
Q psy11036 5 LPILIVALWDIPS------------E------AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKT 66 (239)
Q Consensus 5 ~~dg~i~vwd~~~------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 66 (239)
+.|..|+|.|++. + -.++++..|. ++|+++.|+| ...+|++|+.|++
T Consensus 131 saD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~--------------devn~l~FHP-re~ILiS~srD~t 195 (430)
T KOG0640|consen 131 SADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV--------------DEVNDLDFHP-RETILISGSRDNT 195 (430)
T ss_pred CCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc--------------Ccccceeecc-hhheEEeccCCCe
Confidence 4689999999861 1 2356667777 9999999999 8999999999999
Q ss_pred EEEEeCCCCCceee---ecCCCCEEEEEEecCCcEEEEeCC-CcEEEEEccCCCeEEEEE---eccCCceEEEEEcCCCC
Q psy11036 67 VNVYDTRSPDPVMS---VNHGSPVESVLCLPSGGIFVTGGG-LDVCIWDMLGGGKLLHKF---TCHHKTVTSLCLASGGK 139 (239)
Q Consensus 67 v~vw~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~-~~i~~~d~~~~~~~~~~~---~~~~~~i~~i~~~~~~~ 139 (239)
|+++|+......+. +....+|.++.|+|.|.++++|.+ ..+++||+. +.+..... ..|.+.|+++.+++.++
T Consensus 196 vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~-T~QcfvsanPd~qht~ai~~V~Ys~t~~ 274 (430)
T KOG0640|consen 196 VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN-TYQCFVSANPDDQHTGAITQVRYSSTGS 274 (430)
T ss_pred EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecc-ceeEeeecCcccccccceeEEEecCCcc
Confidence 99999976544333 356789999999999999999997 889999998 66655443 35889999999999999
Q ss_pred EEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEeccc-CcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 140 RLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH-KTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 140 ~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
..++++.||.|++||-- ++++.++. +.|. ..|.++.|..+++++++.+.|..+++|++
T Consensus 275 lYvTaSkDG~IklwDGVS~rCv~t~~--------------------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDGVSNRCVRTIG--------------------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred EEEEeccCCcEEeeccccHHHHHHHH--------------------hhcCCceeeeEEEccCCeEEeecCCcceeeeeee
Confidence 99999999999999966 55555540 2344 46899999999999999999999999999
Q ss_pred cCCeeeEEec
Q psy11036 218 VNFSPVHTLD 227 (239)
Q Consensus 218 ~~~~~~~~~~ 227 (239)
.+++++..+.
T Consensus 335 ~t~R~l~~Yt 344 (430)
T KOG0640|consen 335 STGRMLKEYT 344 (430)
T ss_pred cCCceEEEEe
Confidence 9999998875
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=186.10 Aligned_cols=195 Identities=21% Similarity=0.314 Sum_probs=171.8
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
..|.+++|+| ....++++-.+|.|++||.+.+..+..+ +|.++|..++|+|...++++|+ |-.|++|+.. ..+.+.
T Consensus 10 sRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-~rrclf 87 (1202)
T KOG0292|consen 10 SRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-TRRCLF 87 (1202)
T ss_pred ccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc-cceehh
Confidence 7899999999 8899999999999999999999999999 7999999999999999999999 5889999999 889999
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecc----------------------eeEEEEEccCC
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGG----------------------LDVCIWDMLGG 177 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~----------------------~~i~~~d~~~~ 177 (239)
++.+|..-|..+.|++.-.+++++|.|.+|+||+.. .+++..++|+ ..|++||+..-
T Consensus 88 tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 88 TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence 999999999999999999999999999999999999 8888888653 33999998421
Q ss_pred ----------------------------CEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCee--eEE-e
Q psy11036 178 ----------------------------GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSP--VHT-L 226 (239)
Q Consensus 178 ----------------------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~--~~~-~ 226 (239)
.-..+.+.+|...|.-++|+|.-.++++|++|..|++|.+..-+. +.+ .
T Consensus 168 Rkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcr 247 (1202)
T KOG0292|consen 168 RKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCR 247 (1202)
T ss_pred hccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhh
Confidence 113456789999999999999999999999999999999854333 222 2
Q ss_pred cCCCCeeeeEecC
Q psy11036 227 DYPSPVLSIDVSM 239 (239)
Q Consensus 227 ~~~~~v~~~~~sp 239 (239)
.|..+|.++-|+|
T Consensus 248 gH~nnVssvlfhp 260 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHP 260 (1202)
T ss_pred cccCCcceEEecC
Confidence 3888999999987
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=167.14 Aligned_cols=217 Identities=18% Similarity=0.209 Sum_probs=189.7
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGS 85 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 85 (239)
.||.=.+-+-++|.-+.+|.+|+ +.|.+..++. +....++++.|-+-++||.-++..+..+.|+.
T Consensus 37 kd~~pmlr~g~tgdwigtfeghk--------------gavw~~~l~~-na~~aasaaadftakvw~a~tgdelhsf~hkh 101 (334)
T KOG0278|consen 37 KDGKPMLRNGDTGDWIGTFEGHK--------------GAVWSATLNK-NATRAASAAADFTAKVWDAVTGDELHSFEHKH 101 (334)
T ss_pred cCCCchhccCCCCCcEEeeeccC--------------cceeeeecCc-hhhhhhhhcccchhhhhhhhhhhhhhhhhhhh
Confidence 34444555556777788999999 9999999998 78888999999999999999999999999999
Q ss_pred CEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee
Q psy11036 86 PVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~ 163 (239)
-|.+++|+.+..+|++|+ +.-+++||++....+...+.+|.+.|..+.|....+.|++...|++|++||.+ +..++++
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL 181 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL 181 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE
Confidence 999999999999999999 78899999997778889999999999999999988999999999999999999 6666665
Q ss_pred --------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeee
Q psy11036 164 --------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPV 223 (239)
Q Consensus 164 --------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~ 223 (239)
.-+..|.+||..+ ..++..++. ...|.+.+++|+...+++|+.|..++.||..+++.+
T Consensus 182 ~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaks-f~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi 259 (334)
T KOG0278|consen 182 EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKS-FGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEI 259 (334)
T ss_pred ecCCCCcceeeccCCCEEEEecCceeEEecccc-ccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCcee
Confidence 2345589999876 555555554 456889999999999999999999999999999999
Q ss_pred EEec--CCCCeeeeEecC
Q psy11036 224 HTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 224 ~~~~--~~~~v~~~~~sp 239 (239)
..+. |.++|.++.|+|
T Consensus 260 ~~~nkgh~gpVhcVrFSP 277 (334)
T KOG0278|consen 260 GSYNKGHFGPVHCVRFSP 277 (334)
T ss_pred eecccCCCCceEEEEECC
Confidence 8863 899999999998
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=167.24 Aligned_cols=199 Identities=24% Similarity=0.388 Sum_probs=173.2
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEe------CCCC--
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYD------TRSP-- 75 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~------~~~~-- 75 (239)
.+.|.+-+||.+++++++.++.+|. +.|.+++|++ .+.++++++.|++..||. +...
T Consensus 166 ASADhTA~iWs~Esg~CL~~Y~GH~--------------GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a 230 (481)
T KOG0300|consen 166 ASADHTARIWSLESGACLATYTGHT--------------GSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNA 230 (481)
T ss_pred cccccceeEEeeccccceeeecccc--------------cceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCC
Confidence 4678899999999999999999999 9999999999 899999999999999996 1110
Q ss_pred --------------------------------Cceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEE
Q psy11036 76 --------------------------------DPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHK 121 (239)
Q Consensus 76 --------------------------------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~ 121 (239)
.++..+ +|.+.|.+..|...|+.+++++ |.+-.+||++ +++++..
T Consensus 231 ~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE-tge~v~~ 309 (481)
T KOG0300|consen 231 PSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE-TGEVVNI 309 (481)
T ss_pred CCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeec-cCceecc
Confidence 012223 5778888999999999999999 9999999999 9999999
Q ss_pred EeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC
Q psy11036 122 FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK 201 (239)
Q Consensus 122 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 201 (239)
+.+|....+.++-+|..+++++.+.|.+.++||++ ..-+.+..+++|...|+++.|..+.
T Consensus 310 LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR-------------------eaI~sV~VFQGHtdtVTS~vF~~dd- 369 (481)
T KOG0300|consen 310 LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR-------------------EAIQSVAVFQGHTDTVTSVVFNTDD- 369 (481)
T ss_pred ccCcchhccccccCCcceEEEEeccCceeEeccch-------------------hhcceeeeecccccceeEEEEecCC-
Confidence 99999999999999999999999999999999998 1245567789999999999998765
Q ss_pred eEEEEcCCceEEEEEccCC-eeeEEecCCCCeeeeEec
Q psy11036 202 RLISASLDHHAKIYEMVNF-SPVHTLDYPSPVLSIDVS 238 (239)
Q Consensus 202 ~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~s 238 (239)
.+++||+|.+|++||+++. .++.++...++++-++.+
T Consensus 370 ~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs 407 (481)
T KOG0300|consen 370 RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVS 407 (481)
T ss_pred ceeecCCCceEEEeeeccccCcceeeecCCccceeEee
Confidence 5889999999999999875 578899888888888765
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=183.35 Aligned_cols=176 Identities=15% Similarity=0.253 Sum_probs=141.5
Q ss_pred CCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC--------------------------------C------------
Q psy11036 40 TPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS--------------------------------P------------ 75 (239)
Q Consensus 40 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~--------------------------------~------------ 75 (239)
++++.|.++.|++ +|++||+|+.|+.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 3449999999999 899999999999999998654 0
Q ss_pred ----------------Cceeee-cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-C
Q psy11036 76 ----------------DPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-G 137 (239)
Q Consensus 76 ----------------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~ 137 (239)
+++..+ +|.+.|..+.|+.++-+|-++-|.+|++|++. ..+.+..|. |..-|+|++|+| |
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~-~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPG-RKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCC-CcceeeEEe-cCCeeEEEEecccC
Confidence 011122 47788999999987655544449999999998 788888887 999999999999 7
Q ss_pred CCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 138 GKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 138 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
.++|++|+.|+.++||++.. .+.+.- ..-..-|++++|+|||++.+.|+.+|.+++|+.
T Consensus 422 DryFiSGSLD~KvRiWsI~d--------------------~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t 480 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISD--------------------KKVVDW-NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDT 480 (712)
T ss_pred CCcEeecccccceEEeecCc--------------------CeeEee-hhhhhhheeEEeccCCceEEEEEeccEEEEEEc
Confidence 79999999999999999982 222222 222367999999999999999999999999999
Q ss_pred cCCeeeEEec---C------CCCeeeeEecC
Q psy11036 218 VNFSPVHTLD---Y------PSPVLSIDVSM 239 (239)
Q Consensus 218 ~~~~~~~~~~---~------~~~v~~~~~sp 239 (239)
...+...... + ...|+.+.|.|
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p 511 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFP 511 (712)
T ss_pred cCCeEEEeeeEeeccCccccCceeeeeEecC
Confidence 8877766553 1 23689888876
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-26 Score=158.85 Aligned_cols=198 Identities=15% Similarity=0.210 Sum_probs=170.6
Q ss_pred CCCCEEEEeeCCCcceee--eeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec
Q psy11036 5 LPILIVALWDIPSEAQVS--TFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 82 (239)
+.|+++.+|+++..+... ..++|. +.|-.++|+|....++++++.|.+|++||++.+++.....
T Consensus 39 s~dktv~v~n~e~~r~~~~~~~~gh~--------------~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~ 104 (313)
T KOG1407|consen 39 SFDKTVSVWNLERDRFRKELVYRGHT--------------DSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE 104 (313)
T ss_pred ccCCceEEEEecchhhhhhhcccCCC--------------cchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee
Confidence 467999999998775544 456777 8899999999888999999999999999999999999987
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEe
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVS 161 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 161 (239)
..+.=.-+.|+|+|.++++++ |..|...|.+ ..+.....+ ....+..++|+.++..++....-|.|.|....
T Consensus 105 ~~~eni~i~wsp~g~~~~~~~kdD~it~id~r-~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp----- 177 (313)
T KOG1407|consen 105 TKGENINITWSPDGEYIAVGNKDDRITFIDAR-TYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYP----- 177 (313)
T ss_pred ccCcceEEEEcCCCCEEEEecCcccEEEEEec-ccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEecc-----
Confidence 666667889999999999999 8999999998 666555544 45567889999877877777777999988776
Q ss_pred eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEec
Q psy11036 162 SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 162 ~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s 238 (239)
.-+++..+++|.....|+.|+|+|++||+|+.|..+.+||+...-+++.+. ++=||..++||
T Consensus 178 ---------------sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 178 ---------------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS 240 (313)
T ss_pred ---------------ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec
Confidence 567788889999999999999999999999999999999999998898887 77799999986
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-26 Score=168.46 Aligned_cols=199 Identities=22% Similarity=0.331 Sum_probs=168.5
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 82 (239)
.++.|..|+||.............|. ++|+.+..+| .+++|++++.|++..+.|++++.......
T Consensus 278 ~aSad~~i~vws~~~~s~~~~~~~h~--------------~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs 342 (506)
T KOG0289|consen 278 TASADEIIRVWSVPLSSEPTSSRPHE--------------EPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVS 342 (506)
T ss_pred ecCCcceEEeeccccccCcccccccc--------------ccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEe
Confidence 35678999999998888778888898 9999999999 89999999999999999999999887774
Q ss_pred CC---CCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-c
Q psy11036 83 HG---SPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-L 157 (239)
Q Consensus 83 ~~---~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~ 157 (239)
+. -.+++.+|+|||..+.+|. |+.+++||+. .......|.+|.++|..++|+.+|-+|++++.|+.|++||++ .
T Consensus 343 ~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk-s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 343 DETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK-SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred eccccceeEEeeEcCCceEEeccCCCceEEEEEcC-CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 43 4589999999999999998 8999999999 666889999999999999999999999999999999999998 4
Q ss_pred ceEeee---------------------ecceeEEEEEccC---CCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEE
Q psy11036 158 KTVSSF---------------------TGGLDVCIWDMLG---GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAK 213 (239)
Q Consensus 158 ~~~~~~---------------------~~~~~i~~~d~~~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~ 213 (239)
+.+.++ .++.++++|-... ....+..+..|.+..+.+.|....++++++|.|..++
T Consensus 422 ~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 422 KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILR 501 (506)
T ss_pred cccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheE
Confidence 433333 2344455554331 2445666777888899999999999999999999999
Q ss_pred EEEc
Q psy11036 214 IYEM 217 (239)
Q Consensus 214 iwd~ 217 (239)
++.+
T Consensus 502 ~~a~ 505 (506)
T KOG0289|consen 502 LYAL 505 (506)
T ss_pred Eeec
Confidence 8864
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=178.32 Aligned_cols=182 Identities=24% Similarity=0.361 Sum_probs=162.1
Q ss_pred CCCCCCEEEEeeCCCc--ceeeeeeCCceeeccceeeccCCCCCeEEEEE-ecCCCCEEEEeeCCCeEEEEeCCCCCc--
Q psy11036 3 HDLPILIVALWDIPSE--AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTV-SPVSSDIVISGSYDKTVNVYDTRSPDP-- 77 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~dg~v~vw~~~~~~~-- 77 (239)
..+.|-+|++|+...+ -++.++..|. +.|.|+++ .+ +..++++|+.|+.|.+||+.++..
T Consensus 90 S~SsDtTVK~W~~~~~~~~c~stir~H~--------------DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l 154 (735)
T KOG0308|consen 90 SASSDTTVKVWNAHKDNTFCMSTIRTHK--------------DYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATL 154 (735)
T ss_pred EecCCceEEEeecccCcchhHhhhhccc--------------chheeeeeccc-CceeEEecCCCccEEEEEccCcchhh
Confidence 4578999999999876 5778999999 99999999 55 889999999999999999997732
Q ss_pred eeee----------cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec
Q psy11036 78 VMSV----------NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL 146 (239)
Q Consensus 78 ~~~~----------~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 146 (239)
+..+ ++..+|.+++.++.|..+++|+ .+.+++||.+ ..+.+..+++|...|.++..++||+.+++++.
T Consensus 155 ~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDpr-t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS 233 (735)
T KOG0308|consen 155 VASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPR-TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS 233 (735)
T ss_pred hhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccc-cccceeeeeccccceEEEEEcCCCCeEeecCC
Confidence 2211 3677899999999998888888 7999999999 88888889999999999999999999999999
Q ss_pred CCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCC
Q psy11036 147 DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNF 220 (239)
Q Consensus 147 d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~ 220 (239)
||+|++||+. ..+++.++..|...|.++..+|+=..+.+|+.||.|..=|+++.
T Consensus 234 DgtIrlWdLg--------------------qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 234 DGTIRLWDLG--------------------QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CceEEeeecc--------------------ccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9999999998 56777778999999999999999999999999999999999884
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=177.74 Aligned_cols=198 Identities=21% Similarity=0.286 Sum_probs=173.6
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
|..+.|.+|+.++.++++++.. +.+.+..|.| +++++++|...|.+.++|+.+...+.+. .|
T Consensus 391 ga~~SikiWn~~t~kciRTi~~----------------~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH 453 (888)
T KOG0306|consen 391 GAGESIKIWNRDTLKCIRTITC----------------GYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAH 453 (888)
T ss_pred cCCCcEEEEEccCcceeEEecc----------------ccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhcc
Confidence 5568999999999999999875 4588999999 9999999999999999999998887777 69
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCC----Ce--EEEEEe-----ccCCceEEEEEcCCCCEEEEEecCCeEE
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGG----GK--LLHKFT-----CHHKTVTSLCLASGGKRLISASLDHHAK 151 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~----~~--~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 151 (239)
.+.+..++.+|++..+++++ |.+|++||.... +. ..-.+. .-...|.|++++|||++|+++--|++++
T Consensus 454 dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVk 533 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVK 533 (888)
T ss_pred ccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEE
Confidence 99999999999999999999 899999997521 11 111111 2456899999999999999999999999
Q ss_pred EEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCC
Q psy11036 152 IYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPS 230 (239)
Q Consensus 152 i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~ 230 (239)
||-++ +-+...++-||.-||.++..|||++.++|||.|.+|+||-+.-|.+-+++- |+.
T Consensus 534 VyflD--------------------tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 534 VYFLD--------------------TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD 593 (888)
T ss_pred EEEec--------------------ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence 99888 566677788999999999999999999999999999999999999998887 999
Q ss_pred CeeeeEecC
Q psy11036 231 PVLSIDVSM 239 (239)
Q Consensus 231 ~v~~~~~sp 239 (239)
.|.++.|-|
T Consensus 594 Svm~V~F~P 602 (888)
T KOG0306|consen 594 SVMSVQFLP 602 (888)
T ss_pred ceeEEEEcc
Confidence 999999987
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=159.84 Aligned_cols=196 Identities=21% Similarity=0.316 Sum_probs=155.7
Q ss_pred cCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCe
Q psy11036 39 STPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGK 117 (239)
Q Consensus 39 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~ 117 (239)
.++++.|.++.|+| .++.|++++.||++++|++........+.|..++.+++|.++. .+++|+ ||.|+.+|+. ..
T Consensus 10 npP~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln--~~ 85 (323)
T KOG1036|consen 10 NPPEDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLN--TG 85 (323)
T ss_pred CCChhceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCc-eEEEeccCceEEEEEec--CC
Confidence 34568999999998 6777777889999999999988777788999999999999854 555555 9999999997 33
Q ss_pred EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEccc-ce---------Eeee----------ecceeEEEEEccCC
Q psy11036 118 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTL-KT---------VSSF----------TGGLDVCIWDMLGG 177 (239)
Q Consensus 118 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~-~~---------~~~~----------~~~~~i~~~d~~~~ 177 (239)
....+..|..+|.++..++....+++|+.|++|++||.+. .. +... +.+..+.+||+++-
T Consensus 86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 4455677999999999999888999999999999999982 21 1111 33444777777543
Q ss_pred CE-----------------------------------------------EEEEEecccC---------cEEEEEEccCCC
Q psy11036 178 GK-----------------------------------------------LLHKFTCHHK---------TVTSLCLASGGK 201 (239)
Q Consensus 178 ~~-----------------------------------------------~~~~~~~h~~---------~v~~~~~s~~~~ 201 (239)
.. ....++.|.. +|.+++|+|-.+
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 21 1122334432 689999999999
Q ss_pred eEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEec
Q psy11036 202 RLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 202 ~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s 238 (239)
.|+||+.||.|.+||+.+.+.+..+. .+..|.+++|+
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs 283 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFS 283 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEec
Confidence 99999999999999999999998887 66789999886
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=173.39 Aligned_cols=176 Identities=18% Similarity=0.299 Sum_probs=142.4
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee-eec------CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM-SVN------HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLG 114 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~-~~~------~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~ 114 (239)
..++|.+|+|.+.+.+++++.||++|+||+.+.+... .+. ..-+++.++|+|+++.+|+|. ||.|.+|+...
T Consensus 269 a~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~ 348 (641)
T KOG0772|consen 269 AELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS 348 (641)
T ss_pred eeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCC
Confidence 8899999999888999999999999999997654332 222 345789999999999999888 89999999753
Q ss_pred C--CeEEEEEeccCC--ceEEEEEcCCCCEEEEEecCCeEEEEEcc--cceEeeeecceeEEEEEccCCCEEEEEEec--
Q psy11036 115 G--GKLLHKFTCHHK--TVTSLCLASGGKRLISASLDHHAKIYEMT--LKTVSSFTGGLDVCIWDMLGGGKLLHKFTC-- 186 (239)
Q Consensus 115 ~--~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-- 186 (239)
. ......-.+|.. .|++|+|+++|++|++-+.|+++++||++ .+++... .+
T Consensus 349 ~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~---------------------tgL~ 407 (641)
T KOG0772|consen 349 RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR---------------------TGLP 407 (641)
T ss_pred cccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh---------------------cCCC
Confidence 2 223344457877 99999999999999999999999999998 3333333 22
Q ss_pred ccCcEEEEEEccCCCeEEEEcC------CceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 187 HHKTVTSLCLASGGKRLISASL------DHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 187 h~~~v~~~~~s~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
..-+-+.++|||+.+++++|.. .|.+.+||..+.+.++++. ....|..+.|||
T Consensus 408 t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 408 TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc
Confidence 1234567899999999999864 5789999999999999998 456899999998
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=168.72 Aligned_cols=210 Identities=17% Similarity=0.195 Sum_probs=171.4
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
+.|.|..|.||+.++.+.++.+.+|. +.|.+++|-. +.+.|++++.|+.|++|++.....+.++
T Consensus 219 tgg~d~~v~Iw~~~t~ehv~~~~ghr--------------~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTLEHVKVFKGHR--------------GAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred ecCCCceEEEecCcccchhhcccccc--------------cceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHh
Confidence 44678899999999999999999999 9999999998 8899999999999999999988887776
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cce
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 159 (239)
+|+..|.++....-++.+.+|+ |+++++|++. .+....+.++.+.+.|++|- +..++++|+.+|.|.+|++. .+.
T Consensus 284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~--eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP--EESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred CCccceeeechhcccceEEeccccceeEEEecc--ccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCc
Confidence 8999999999888888888887 9999999995 33444567888899999997 45789999999999999998 444
Q ss_pred EeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCC----eeeEEecCCCCeeee
Q psy11036 160 VSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNF----SPVHTLDYPSPVLSI 235 (239)
Q Consensus 160 ~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~~~~v~~~ 235 (239)
+.+. ....+-.+...-..+...|++++..|...++|+||.+|.|++|-+..+ .++..+...+-|+++
T Consensus 361 lf~~---------~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl 431 (479)
T KOG0299|consen 361 LFTS---------RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSL 431 (479)
T ss_pred eeEe---------eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEE
Confidence 3333 000000000000112348999999999999999999999999998776 677888889999999
Q ss_pred EecC
Q psy11036 236 DVSM 239 (239)
Q Consensus 236 ~~sp 239 (239)
+|++
T Consensus 432 ~f~~ 435 (479)
T KOG0299|consen 432 AFSN 435 (479)
T ss_pred EEcc
Confidence 9874
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=164.36 Aligned_cols=198 Identities=20% Similarity=0.362 Sum_probs=167.8
Q ss_pred CCCCCCEEEEeeCCCcceee---eeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee
Q psy11036 3 HDLPILIVALWDIPSEAQVS---TFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM 79 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 79 (239)
..++|++|+++|.......+ .|... .+|.++.|+| .|++|+.|..-.++++||+++-++..
T Consensus 189 S~srD~tvKlFDfsK~saKrA~K~~qd~---------------~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAFKVFQDT---------------EPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred eccCCCeEEEEecccHHHHHHHHHhhcc---------------ceeeeEeecC-CCceEEEecCCCceeEEeccceeEee
Confidence 34689999999986543333 33333 7899999999 89999999999999999999988765
Q ss_pred ee----cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEe-ccC-CceEEEEEcCCCCEEEEEecCCeEEE
Q psy11036 80 SV----NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFT-CHH-KTVTSLCLASGGKRLISASLDHHAKI 152 (239)
Q Consensus 80 ~~----~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~-~~~-~~i~~i~~~~~~~~l~~~~~d~~i~i 152 (239)
.- +|.+.|+++.+++.+++.++++ ||.|++||-- ..+.+.++. +|. ..|.+..|..+|+++++.+.|..+++
T Consensus 253 sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV-S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV-SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKL 331 (430)
T ss_pred ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccc-cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeee
Confidence 43 4889999999999999999999 9999999987 667776664 454 47999999999999999999999999
Q ss_pred EEcc-cceEeeeec----------------------------ceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeE
Q psy11036 153 YEMT-LKTVSSFTG----------------------------GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 203 (239)
Q Consensus 153 ~d~~-~~~~~~~~~----------------------------~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 203 (239)
|.+. ++++..++| ...++-||.++..+....-.+|.+++..+.-||.+.-+
T Consensus 332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce
Confidence 9999 899988855 23388899988766666667899999999999999999
Q ss_pred EEEcCCceEEEEEc
Q psy11036 204 ISASLDHHAKIYEM 217 (239)
Q Consensus 204 ~s~s~d~~i~iwd~ 217 (239)
.+||.|..+|+|--
T Consensus 412 mTcsdD~raRFWyr 425 (430)
T KOG0640|consen 412 MTCSDDFRARFWYR 425 (430)
T ss_pred eeecccceeeeeee
Confidence 99999999999954
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=160.22 Aligned_cols=208 Identities=18% Similarity=0.253 Sum_probs=162.5
Q ss_pred CCCCCCEEEEeeCCCcce---eeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee
Q psy11036 3 HDLPILIVALWDIPSEAQ---VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM 79 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 79 (239)
..|.||.|.|||+++... ..-+..|..+ +...+...|+-.|.++.|-|.+...+.+++.|.+++|||..+.+...
T Consensus 61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~--v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~ 138 (397)
T KOG4283|consen 61 SGGADGSIAVFDLQNATDYEASGLIAKHKCI--VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV 138 (397)
T ss_pred ecCCCccEEEEEeccccchhhccceeheeee--ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE
Confidence 457899999999975431 1111112111 12223344557899999999888899999999999999999999999
Q ss_pred eecCCCCEEEEEEecC---CcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCE-EEEEecCCeEEEEE
Q psy11036 80 SVNHGSPVESVLCLPS---GGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR-LISASLDHHAKIYE 154 (239)
Q Consensus 80 ~~~~~~~v~~~~~~~~---~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d~~i~i~d 154 (239)
.+..++.|..-+++|- ..++++|. +-.|++.|+. .+...+.+.+|.+.|.++.|+|...+ |++|+.||.|++||
T Consensus 139 ~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWD 217 (397)
T KOG4283|consen 139 DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWD 217 (397)
T ss_pred EeecCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEE
Confidence 9999999999999993 33455555 6889999999 89999999999999999999997764 77899999999999
Q ss_pred cc--cceEeeeecceeEEEEEccCC-CEE-EEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCee
Q psy11036 155 MT--LKTVSSFTGGLDVCIWDMLGG-GKL-LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 155 ~~--~~~~~~~~~~~~i~~~d~~~~-~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
++ ..++..+ |..++ ..+ +..-..|.+.|..++|+.++.++++++.|..+++|+..+|+.
T Consensus 218 iRrasgcf~~l---------D~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 218 IRRASGCFRVL---------DQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred eecccceeEEe---------ecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 99 3454444 33332 112 223457899999999999999999999999999999987754
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=160.60 Aligned_cols=215 Identities=13% Similarity=0.166 Sum_probs=163.3
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEE-EEeeCCCeEEEEeCCCCCceeeecC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIV-ISGSYDKTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~~~~~~~~~ 83 (239)
+.++.|++||..+++....+..+. .+..++|+| +++.+ ++++.++.+++||+.+.+.+..+..
T Consensus 50 ~~~~~v~~~d~~~~~~~~~~~~~~---------------~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~ 113 (300)
T TIGR03866 50 SDSDTIQVIDLATGEVIGTLPSGP---------------DPELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPV 113 (300)
T ss_pred CCCCeEEEEECCCCcEEEeccCCC---------------CccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence 457899999999988877776653 356789999 56655 5556789999999998887777765
Q ss_pred CCCEEEEEEecCCcEEEEeC-C-CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEE-ecCCeEEEEEcc-cce
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-G-LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA-SLDHHAKIYEMT-LKT 159 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~-~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~-~~~ 159 (239)
...+.+++|+|++..++++. + ..+.+||.+ ..+...... .......++|+|++++++++ ..++.|++||++ .+.
T Consensus 114 ~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~-~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 114 GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK-TYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred CCCcceEEECCCCCEEEEEecCCCeEEEEeCC-CCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 56678999999999999887 4 457778987 555554443 23445789999999988654 469999999997 433
Q ss_pred Eeee------------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEE-cC
Q psy11036 160 VSSF------------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA-SL 208 (239)
Q Consensus 160 ~~~~------------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~ 208 (239)
+..+ .+...+.+||..+ .+....+. +...+.+++|+|+|++|+++ +.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~ 269 (300)
T TIGR03866 192 IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT-YEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGV 269 (300)
T ss_pred eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC-CcEEEEEE-eCCCcceEEECCCCCEEEEEcCC
Confidence 2211 1123488899875 44444332 34578999999999999876 46
Q ss_pred CceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 209 DHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 209 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
++.|++||+.+++++.+++.....++++++|
T Consensus 270 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 270 SNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred CCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 8999999999999999999888889999987
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=166.58 Aligned_cols=217 Identities=17% Similarity=0.246 Sum_probs=177.2
Q ss_pred CCCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 2 SHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 2 s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
.+.+.||.|+|||+.+.++..++++|. +.|..|++.. +.+++++.|.+|+.|.++. .+..++
T Consensus 83 aSGs~DG~VkiWnlsqR~~~~~f~AH~--------------G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~-~p~~ti 144 (433)
T KOG0268|consen 83 ASGSCDGEVKIWNLSQRECIRTFKAHE--------------GLVRGICVTQ---TSFFTVGDDKTVKQWKIDG-PPLHTI 144 (433)
T ss_pred hccccCceEEEEehhhhhhhheeeccc--------------CceeeEEecc---cceEEecCCcceeeeeccC-Ccceee
Confidence 345779999999999999999999999 9999999975 6788999999999999875 477777
Q ss_pred cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEEcc-cce
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~-~~~ 159 (239)
.....+..+..+..+..+++++ ..|.|||.. ...++..+.-....|.++.|+|.. ..|++++.|+.|.+||++ ...
T Consensus 145 lg~s~~~gIdh~~~~~~FaTcG-e~i~IWD~~-R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P 222 (433)
T KOG0268|consen 145 LGKSVYLGIDHHRKNSVFATCG-EQIDIWDEQ-RDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP 222 (433)
T ss_pred eccccccccccccccccccccC-ceeeecccc-cCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc
Confidence 6677788888777666666655 358999998 778899998888899999999976 467777799999999999 555
Q ss_pred Eeee-------------------e--cceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 160 VSSF-------------------T--GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 160 ~~~~-------------------~--~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
+..+ . .+.+++.+|++.-..++....+|.++|.++.|||.|+-+++||.|.+|+||...
T Consensus 223 l~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 223 LKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred cceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence 4443 1 233488999999889999999999999999999999999999999999999987
Q ss_pred CCeeeEEec--CCCCeeeeEec
Q psy11036 219 NFSPVHTLD--YPSPVLSIDVS 238 (239)
Q Consensus 219 ~~~~~~~~~--~~~~v~~~~~s 238 (239)
.+..-..+. --..|.++.||
T Consensus 303 ~~~SRdiYhtkRMq~V~~Vk~S 324 (433)
T KOG0268|consen 303 HGHSRDIYHTKRMQHVFCVKYS 324 (433)
T ss_pred CCcchhhhhHhhhheeeEEEEe
Confidence 665433222 22356666665
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=173.16 Aligned_cols=180 Identities=17% Similarity=0.265 Sum_probs=142.5
Q ss_pred CCCCCEEEEeeCCCc-------ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC
Q psy11036 4 DLPILIVALWDIPSE-------AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD 76 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 76 (239)
.+.|+.|++||+.++ +++..+.+|. ..|.+++|+|.++++|++++.|++|++||+++++
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~--------------~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~ 159 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT--------------KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK 159 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCC--------------CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe
Confidence 357899999999765 3466788888 9999999999556799999999999999999998
Q ss_pred ceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCc-eEEEEEcCCCCEEEEEe----cCCe
Q psy11036 77 PVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKT-VTSLCLASGGKRLISAS----LDHH 149 (239)
Q Consensus 77 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~----~d~~ 149 (239)
....+ .|...|.+++|+|++.++++++ |+.|++||++ .++.+..+.+|.+. ...+.|.+++..+++++ .|+.
T Consensus 160 ~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r-sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 160 AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR-DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECC-CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence 88777 5889999999999999999998 8999999999 77788888888765 45678899888777655 4789
Q ss_pred EEEEEcc--cceEeee------------------------ecceeEEEEEccCCCEEEEEEe-cccCcEEEEEEccC
Q psy11036 150 AKIYEMT--LKTVSSF------------------------TGGLDVCIWDMLGGGKLLHKFT-CHHKTVTSLCLASG 199 (239)
Q Consensus 150 i~i~d~~--~~~~~~~------------------------~~~~~i~~~d~~~~~~~~~~~~-~h~~~v~~~~~s~~ 199 (239)
|++||++ ...+... .|++.|++||+.+. +++.... .+..++..++|.|.
T Consensus 239 VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~-~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 239 IMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE-RLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC-ceEEEeeccCCCCCcceEeccc
Confidence 9999997 2222111 13566999999874 4443333 34556788888884
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=164.14 Aligned_cols=193 Identities=18% Similarity=0.292 Sum_probs=148.7
Q ss_pred CCCEEEEeeCCCcceeeeee-----CCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee-
Q psy11036 6 PILIVALWDIPSEAQVSTFT-----NHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM- 79 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~- 79 (239)
..|.|+|||+... ++.+. .+. ....|++.+..++..=+.++|+|.....|++|..-+.|++|...++....
T Consensus 173 e~G~V~Vw~l~~~--l~~l~~~~~~~~~-s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd 249 (440)
T KOG0302|consen 173 ENGRVQVWDLAPH--LNALSEPGLEVKD-SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD 249 (440)
T ss_pred ccCcEEEEEchhh--hhhhcCccccccc-cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec
Confidence 4589999998432 11110 010 12234455555558999999999666678999888999999998876432
Q ss_pred ---eecCCCCEEEEEEecCC-cEEEEeC-CCcEEEEEccCC-CeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy11036 80 ---SVNHGSPVESVLCLPSG-GIFVTGG-GLDVCIWDMLGG-GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIY 153 (239)
Q Consensus 80 ---~~~~~~~v~~~~~~~~~-~~l~~~~-~~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 153 (239)
...|...|..++|+|.. ..|++++ ||+|+|||+|.. .+.....++|.+.|+.|.|+.+..+||+|+.||+++||
T Consensus 250 ~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iw 329 (440)
T KOG0302|consen 250 QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIW 329 (440)
T ss_pred CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEE
Confidence 22699999999999954 4666666 999999999954 23334458999999999999988899999999999999
Q ss_pred EcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC-CCeEEEEcCCceEEEEEcc
Q psy11036 154 EMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG-GKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 154 d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~i~iwd~~ 218 (239)
|++.- ..++++..++.|..+|+++.|+|. ...|++++.|.+|.|||+.
T Consensus 330 DLR~~-----------------~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 330 DLRQF-----------------KSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred Ehhhc-----------------cCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 99811 135788899999999999999994 5678888899999999985
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=173.98 Aligned_cols=181 Identities=14% Similarity=0.254 Sum_probs=140.4
Q ss_pred CCCCCEEEEeeCCCcc--------eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC
Q psy11036 4 DLPILIVALWDIPSEA--------QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP 75 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 75 (239)
.+.||.|+|||+.++. ++..+.+|. ..|.+++|+|.+..+|++++.|++|++||++++
T Consensus 93 gS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~--------------~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg 158 (568)
T PTZ00420 93 GSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK--------------KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE 158 (568)
T ss_pred EeCCCeEEEEECCCCCccccccccceEEeecCC--------------CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence 4678999999997642 234567777 899999999954446789999999999999999
Q ss_pred CceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEE-----EEcCCCCEEEEEecCC-
Q psy11036 76 DPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSL-----CLASGGKRLISASLDH- 148 (239)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i-----~~~~~~~~l~~~~~d~- 148 (239)
+....+.+...|.+++|+|+|.+|++++ |+.|++||++ .++.+..+.+|.+.+... .|++++.+|++++.|+
T Consensus 159 ~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R-sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~ 237 (568)
T PTZ00420 159 KRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR-KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN 237 (568)
T ss_pred cEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECC-CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence 8877777778899999999999999888 8999999999 788888899998765433 3458889999988774
Q ss_pred ---eEEEEEcc--cceEeee------------------------ecceeEEEEEccCCCE-EEEEEecccCcEEEEEEcc
Q psy11036 149 ---HAKIYEMT--LKTVSSF------------------------TGGLDVCIWDMLGGGK-LLHKFTCHHKTVTSLCLAS 198 (239)
Q Consensus 149 ---~i~i~d~~--~~~~~~~------------------------~~~~~i~~~d~~~~~~-~~~~~~~h~~~v~~~~~s~ 198 (239)
.|+|||++ .+.+..+ .|+..|++|++..+.. .+..+ .+..++.+++|.|
T Consensus 238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~-~s~~p~~g~~f~P 316 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEY-KSCSPFRSFGFLP 316 (568)
T ss_pred CccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeeccc-ccCCCccceEEcc
Confidence 79999998 3333221 3566799999876421 12222 2567788999999
Q ss_pred CC
Q psy11036 199 GG 200 (239)
Q Consensus 199 ~~ 200 (239)
..
T Consensus 317 kr 318 (568)
T PTZ00420 317 KQ 318 (568)
T ss_pred cc
Confidence 63
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=156.03 Aligned_cols=206 Identities=22% Similarity=0.261 Sum_probs=162.1
Q ss_pred CCCCCCCEEEEeeCCCc---ceeeeeeCCceeeccceeeccCCCCCeEEEEEe-cCCCCEEEEeeCCCeEEEEeCCCCCc
Q psy11036 2 SHDLPILIVALWDIPSE---AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVS-PVSSDIVISGSYDKTVNVYDTRSPDP 77 (239)
Q Consensus 2 s~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~v~vw~~~~~~~ 77 (239)
.+.++|++|+|+.+++. +++.++.+|. ++|..++|. |--+.+|+++++||.|.||.-.+++-
T Consensus 27 ATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~--------------GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w 92 (299)
T KOG1332|consen 27 ATCSSDGTVKIFEVRNNGQSKLLAELTGHS--------------GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW 92 (299)
T ss_pred eeecCCccEEEEEEcCCCCceeeeEecCCC--------------CCeeEEeecccccCcEeeEeecCceEEEEecCCCch
Confidence 46789999999999764 4678999999 999999996 43578999999999999999988865
Q ss_pred eeee---cCCCCEEEEEEecC--CcEEEEeC-CCcEEEEEccCCCe--EEEEEeccCCceEEEEEcCC---C--------
Q psy11036 78 VMSV---NHGSPVESVLCLPS--GGIFVTGG-GLDVCIWDMLGGGK--LLHKFTCHHKTVTSLCLASG---G-------- 138 (239)
Q Consensus 78 ~~~~---~~~~~v~~~~~~~~--~~~l~~~~-~~~i~~~d~~~~~~--~~~~~~~~~~~i~~i~~~~~---~-------- 138 (239)
.+.. .|...|++++|.|. |-.|++++ ||.|.+.+.+..+. .......|.-.|++++|.|. |
T Consensus 93 ~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~ 172 (299)
T KOG1332|consen 93 TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPA 172 (299)
T ss_pred hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcc
Confidence 4433 48899999999995 55677776 89999999875422 23445689999999999985 4
Q ss_pred ---CEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC----CeEEEEcCCce
Q psy11036 139 ---KRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG----KRLISASLDHH 211 (239)
Q Consensus 139 ---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~s~d~~ 211 (239)
+.|++|+.|+.|+||+... ..-.....+.+|...|+.++|.|.- ..||++|.||+
T Consensus 173 ~~~krlvSgGcDn~VkiW~~~~------------------~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~ 234 (299)
T KOG1332|consen 173 AKVKRLVSGGCDNLVKIWKFDS------------------DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT 234 (299)
T ss_pred cccceeeccCCccceeeeecCC------------------cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence 5699999999999999871 1123444579999999999999963 47999999999
Q ss_pred EEEEEccCC-ee-eEEec--CCCCeeeeEecC
Q psy11036 212 AKIYEMVNF-SP-VHTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 212 i~iwd~~~~-~~-~~~~~--~~~~v~~~~~sp 239 (239)
|.||..... ++ ..++. .+..+..++||+
T Consensus 235 viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~ 266 (299)
T KOG1332|consen 235 VIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL 266 (299)
T ss_pred EEEEEecCccCcccccccccCCcceEEEEEec
Confidence 999977521 11 11221 567888888875
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=166.12 Aligned_cols=196 Identities=18% Similarity=0.261 Sum_probs=158.7
Q ss_pred CCCCEEEEeeCCCcceeeeeeCC-ceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNH-TTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~ 82 (239)
|.+..+.+||+.+|.....+... . ..+.+++|.| ++..+++|+.|+++..||+.... .... +
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~~--------------~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~g 351 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGLG--------------FSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNI-LGNWEG 351 (519)
T ss_pred CchHheeeccCCcchhhhhcccCcC--------------CCcceeEEcc-CCceeEecCCCCcEEEecCCcch-hhcccc
Confidence 55678999999999988777543 4 6799999999 89999999999999999997443 3333 1
Q ss_pred -CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cce
Q psy11036 83 -HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 83 -~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 159 (239)
....|.+++..+||+++++.. |..|++|+.+ ...... +.....+|++++.+.+++++++.-.+..+++||++ ...
T Consensus 352 vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e-~~~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l 429 (519)
T KOG0293|consen 352 VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE-ARVDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL 429 (519)
T ss_pred cccceeEEEEEcCCCcEEEEEecccceeeechh-hhhhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH
Confidence 335699999999999988887 8999999987 333332 23356789999999999999999999999999997 332
Q ss_pred Eeee-----------------------ec--ceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEcCCceEE
Q psy11036 160 VSSF-----------------------TG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAK 213 (239)
Q Consensus 160 ~~~~-----------------------~~--~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~ 213 (239)
+..+ +| +..|++|+-.+ ++++..+.||...|.+++|+| +-..+|++|+||+||
T Consensus 430 v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIR 508 (519)
T KOG0293|consen 430 VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIR 508 (519)
T ss_pred HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC-CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEE
Confidence 2222 22 34499999776 899999999999999999999 456789999999999
Q ss_pred EEEccC
Q psy11036 214 IYEMVN 219 (239)
Q Consensus 214 iwd~~~ 219 (239)
||....
T Consensus 509 IWg~~~ 514 (519)
T KOG0293|consen 509 IWGPSD 514 (519)
T ss_pred EecCCc
Confidence 997753
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=170.20 Aligned_cols=220 Identities=19% Similarity=0.316 Sum_probs=175.5
Q ss_pred CCCCEEEEeeCCCc---ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 5 LPILIVALWDIPSE---AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
|..|.|+|||+... .++..+..-. ....|+++.+.| +++.|++|++-.++.|||+....+....
T Consensus 437 gGkgcVKVWdis~pg~k~PvsqLdcl~------------rdnyiRSckL~p-dgrtLivGGeastlsiWDLAapTprika 503 (705)
T KOG0639|consen 437 GGKGCVKVWDISQPGNKSPVSQLDCLN------------RDNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKA 503 (705)
T ss_pred cCCCeEEEeeccCCCCCCccccccccC------------cccceeeeEecC-CCceEEeccccceeeeeeccCCCcchhh
Confidence 55689999998542 2333333221 127899999999 8999999999999999999877654433
Q ss_pred c---CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-
Q psy11036 82 N---HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT- 156 (239)
Q Consensus 82 ~---~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~- 156 (239)
. ....+.+++.+||.+.++++. ||.|.|||+. +...++.+++|...+.||..+++|..|.+|+-|++|+.||++
T Consensus 504 eltssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 504 ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence 2 234578899999999887776 8999999999 888999999999999999999999999999999999999998
Q ss_pred cceEeee-------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 157 LKTVSSF-------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 157 ~~~~~~~-------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
++.+... .|-.+-.+|=+.+.+.....+..|.+-|.++.|++.|+++++.+.|..+..|..
T Consensus 583 grqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 583 GRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred hhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccC
Confidence 4443322 111122333333445555667789999999999999999999999999999999
Q ss_pred cCCeeeEEecCCCCeeeeEec
Q psy11036 218 VNFSPVHTLDYPSPVLSIDVS 238 (239)
Q Consensus 218 ~~~~~~~~~~~~~~v~~~~~s 238 (239)
.-|..+...+..++|.++++|
T Consensus 663 PyGasiFqskE~SsVlsCDIS 683 (705)
T KOG0639|consen 663 PYGASIFQSKESSSVLSCDIS 683 (705)
T ss_pred ccccceeeccccCcceeeeec
Confidence 999999999888999988775
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-23 Score=150.68 Aligned_cols=195 Identities=17% Similarity=0.257 Sum_probs=160.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~ 118 (239)
..|.++.|++ +|.++++++.|.++++||..+++.+.++ .++..+..++|......++.++ |.+|+..++. ..+.
T Consensus 15 ~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~-dNky 92 (311)
T KOG1446|consen 15 GKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH-DNKY 92 (311)
T ss_pred CceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee-cCce
Confidence 8899999999 8999999999999999999999999988 4667788888876655555554 7899999999 8899
Q ss_pred EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee--------------------ecceeEEEEEccCC
Q psy11036 119 LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF--------------------TGGLDVCIWDMLGG 177 (239)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~--------------------~~~~~i~~~d~~~~ 177 (239)
++-+.+|...|.+++.+|-+..+++++.|++|++||++ .++...+ .+...|++||++.-
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence 99999999999999999999999999999999999999 4444333 34447999999864
Q ss_pred -CEEEEEEe---cccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCC---CeeeeEecC
Q psy11036 178 -GKLLHKFT---CHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPS---PVLSIDVSM 239 (239)
Q Consensus 178 -~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~---~v~~~~~sp 239 (239)
..+...+. +.....+.+.|||||++|+.+...+.+++.|.-+|..+.++. ++. -.-+.+|+|
T Consensus 173 dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 173 DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred CCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 33444433 335678999999999999999999999999999999988887 222 124555655
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-26 Score=179.59 Aligned_cols=176 Identities=16% Similarity=0.265 Sum_probs=150.0
Q ss_pred CeEEEEEecCCCCEEEEeeCCCeEEEEeCCC---CCceeee-cCCCCEEEEEEecCC-cEEEEeC-CCcEEEEEccCCCe
Q psy11036 44 YVRAGTVSPVSSDIVISGSYDKTVNVYDTRS---PDPVMSV-NHGSPVESVLCLPSG-GIFVTGG-GLDVCIWDMLGGGK 117 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~---~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~-~~~i~~~d~~~~~~ 117 (239)
.+..++|.....++|++++..|.|.+||+.. .+.+..+ .|+..+.++.|++.. .+|++|+ ||.|++||++ ..+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR-~~~ 167 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR-SKK 167 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee-ccc
Confidence 3456788876789999999999999999986 3444455 699999999999954 4666677 8999999999 777
Q ss_pred EEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEE
Q psy11036 118 LLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL 196 (239)
Q Consensus 118 ~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~ 196 (239)
...++.+....|..++|+| .+..|+++...|.+++||++ ...++...+.+|.++|.++.|
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR-------------------qp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR-------------------QPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeecc-------------------CchhHHHHhhcccCceEEEee
Confidence 7777778888999999999 56889999999999999987 345667777899999999999
Q ss_pred ccCCCeEEEEcCCceEEEEEccCC--eeeEEecCCCCeeeeEecC
Q psy11036 197 ASGGKRLISASLDHHAKIYEMVNF--SPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 197 s~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~v~~~~~sp 239 (239)
+|++.+||||+.|+.|+|||+.+. +++.+++...+|..+.|-|
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP 273 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRP 273 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeecc
Confidence 999999999999999999999764 4577778888999999977
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=171.88 Aligned_cols=215 Identities=16% Similarity=0.174 Sum_probs=170.1
Q ss_pred CCCCCCEEEEeeCCCc-ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 3 HDLPILIVALWDIPSE-AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
+.|+||.|++|+..+. +...++..+. ..|.+++.. .++|++|+.+++|.+|.+.+++.-..+
T Consensus 30 tcgsdg~ir~~~~~sd~e~P~ti~~~g--------------~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 30 TCGSDGDIRKWKTNSDEEEPETIDISG--------------ELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred EecCCCceEEeecCCcccCCchhhccC--------------ceeEEEeec---ccceEEeeccceEEEeeCCCCCcccee
Confidence 4578999999987655 4444555455 778888874 469999999999999999998876555
Q ss_pred -cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cc
Q psy11036 82 -NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LK 158 (239)
Q Consensus 82 -~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~ 158 (239)
+..-++.+++++.+|+++++|+ |-.|++.++. .......+.+|.++|.++.|+|++++||+.+.||.|++||+. +.
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEecc-ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch
Confidence 6788999999999999999999 5889999998 677788899999999999999999999999999999999998 44
Q ss_pred eEeee------------------------------ecceeEEEEEccCCCEEEEEEec--ccCcEEEEEEccCCCeEEEE
Q psy11036 159 TVSSF------------------------------TGGLDVCIWDMLGGGKLLHKFTC--HHKTVTSLCLASGGKRLISA 206 (239)
Q Consensus 159 ~~~~~------------------------------~~~~~i~~~d~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~ 206 (239)
...++ ..+..|.+|+..+ .+....+.. +...+.++.|+|+|+|||++
T Consensus 172 ~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs 250 (933)
T KOG1274|consen 172 LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSKFSDLQWSPNGKYIAAS 250 (933)
T ss_pred hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC-ceeheeecccccccceEEEEEcCCCcEEeee
Confidence 43333 1234477777554 444444432 44559999999999999999
Q ss_pred cCCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 207 SLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 207 s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
+.||.|.|||.++.+. -.....|.+++|.|
T Consensus 251 ~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p 280 (933)
T KOG1274|consen 251 TLDGQILVWNVDTHER---HEFKRAVCCEAWKP 280 (933)
T ss_pred ccCCcEEEEecccchh---ccccceeEEEecCC
Confidence 9999999999987222 22445777777765
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=158.93 Aligned_cols=163 Identities=19% Similarity=0.320 Sum_probs=140.8
Q ss_pred cceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEE
Q psy11036 33 VPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWD 111 (239)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d 111 (239)
.|...+..|.++|.++.|++ ...+++++.|.+|+.||+.++.....+..+..+.++..+|...++++|+ |..+++||
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred CceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecC
Confidence 34444445559999999997 6789999999999999999999999988889999999999999999998 89999999
Q ss_pred ccCCC--eEEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEeccc
Q psy11036 112 MLGGG--KLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH 188 (239)
Q Consensus 112 ~~~~~--~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~ 188 (239)
.+... -..+++.+|.+-|.++.|+|.. ..|++++.|+++++||++ ....++..+.+|.
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR-------------------S~k~plydI~~h~ 389 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR-------------------STKAPLYDIAGHN 389 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec-------------------cCCCcceeeccCC
Confidence 98543 3456788999999999999955 678999999999999988 3345778889999
Q ss_pred CcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 189 KTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 189 ~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
..|.++.|+ ++..+++|+.|.+|+|+.-
T Consensus 390 DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 390 DKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ceEEEEecc-CCceEEeccCcceEEEecc
Confidence 999999997 5778999999999999864
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-25 Score=167.36 Aligned_cols=208 Identities=18% Similarity=0.244 Sum_probs=150.2
Q ss_pred CCCCCCCCEEEEeeCCCcc----eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC
Q psy11036 1 MSHDLPILIVALWDIPSEA----QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD 76 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 76 (239)
|.+.+-|..|++||..... .-+.+.... ...|.+++|++ .++.|++.+.....+|+|-...+
T Consensus 182 ~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E-------------~h~i~sl~ys~-Tg~~iLvvsg~aqakl~DRdG~~ 247 (641)
T KOG0772|consen 182 FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCE-------------THQINSLQYSV-TGDQILVVSGSAQAKLLDRDGFE 247 (641)
T ss_pred eeeccccceEEEEecccccccchhhhccCccc-------------ccccceeeecC-CCCeEEEEecCcceeEEccCCce
Confidence 3455678999999986432 112222111 15699999999 67777666777889999965333
Q ss_pred ce---------eee----cCCCCEEEEEEecCCc-EEEEeC-CCcEEEEEccCCCeEEEEEe-----ccCCceEEEEEcC
Q psy11036 77 PV---------MSV----NHGSPVESVLCLPSGG-IFVTGG-GLDVCIWDMLGGGKLLHKFT-----CHHKTVTSLCLAS 136 (239)
Q Consensus 77 ~~---------~~~----~~~~~v~~~~~~~~~~-~l~~~~-~~~i~~~d~~~~~~~~~~~~-----~~~~~i~~i~~~~ 136 (239)
.. ..+ +|...++|.+|+|..+ .+++++ ||++++||+.......+.++ +..-+++.++|+|
T Consensus 248 ~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr 327 (641)
T KOG0772|consen 248 IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR 327 (641)
T ss_pred eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC
Confidence 22 212 4778899999999543 444555 89999999986666555554 2344789999999
Q ss_pred CCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccC--cEEEEEEccCCCeEEEEcCCceEEE
Q psy11036 137 GGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHK--TVTSLCLASGGKRLISASLDHHAKI 214 (239)
Q Consensus 137 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~d~~i~i 214 (239)
+|+.||+|+.||.|.+|+..... .......-.+|.. .|++++||+||++|++=+.|+++++
T Consensus 328 dg~~iAagc~DGSIQ~W~~~~~~-----------------v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 328 DGKLIAAGCLDGSIQIWDKGSRT-----------------VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred CcchhhhcccCCceeeeecCCcc-----------------cccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 99999999999999999976111 1122233356766 8999999999999999999999999
Q ss_pred EEccCC-eeeEEec---CCCCeeeeEecC
Q psy11036 215 YEMVNF-SPVHTLD---YPSPVLSIDVSM 239 (239)
Q Consensus 215 wd~~~~-~~~~~~~---~~~~v~~~~~sp 239 (239)
||++.. +++.... ..-+-+.++|||
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSP 419 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSP 419 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCC
Confidence 999875 4565544 344678888887
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=143.98 Aligned_cols=196 Identities=18% Similarity=0.351 Sum_probs=156.7
Q ss_pred CCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee-----ee-cCCCCEEEEEEec----CCcEEEEeC--CCcE
Q psy11036 40 TPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM-----SV-NHGSPVESVLCLP----SGGIFVTGG--GLDV 107 (239)
Q Consensus 40 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~-----~~-~~~~~v~~~~~~~----~~~~l~~~~--~~~i 107 (239)
.+++.|.|.+|+| .++++++|+.|.+|++.-+....+.. .+ .|.+.|..++|-. .+..+++++ |..|
T Consensus 87 hhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 87 HHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred ccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 4569999999999 89999999999999998776443322 23 4889999999965 356777777 4556
Q ss_pred EEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee-----------------------
Q psy11036 108 CIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF----------------------- 163 (239)
Q Consensus 108 ~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~----------------------- 163 (239)
.+-|-. .++.++.+.+|.+.|.++ ++=++..+++|+.|.+|++||++ ..++..+
T Consensus 166 y~tdc~-~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg 243 (350)
T KOG0641|consen 166 YITDCG-RGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG 243 (350)
T ss_pred EEeecC-CCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence 666776 788999999999999876 33368899999999999999999 7776665
Q ss_pred ----ec--ceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCC----eeeEE-ecCCCCe
Q psy11036 164 ----TG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNF----SPVHT-LDYPSPV 232 (239)
Q Consensus 164 ----~~--~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~----~~~~~-~~~~~~v 232 (239)
+| +....+||++. +.+++.+..|...|.++.|+|...+|++++.|..|++-|+..- -++.. -+|...+
T Consensus 244 rll~sg~~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKA 322 (350)
T ss_pred ceeeeccCCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCce
Confidence 11 23367899986 8899999999999999999999999999999999999998531 12222 2377888
Q ss_pred eeeEecC
Q psy11036 233 LSIDVSM 239 (239)
Q Consensus 233 ~~~~~sp 239 (239)
..+.|+|
T Consensus 323 i~~rwh~ 329 (350)
T KOG0641|consen 323 IQCRWHP 329 (350)
T ss_pred EEEEecC
Confidence 8888876
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=154.94 Aligned_cols=220 Identities=16% Similarity=0.184 Sum_probs=163.4
Q ss_pred CCCCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEE-EEeeCCCeEEEEeCCCCCcee
Q psy11036 1 MSHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIV-ISGSYDKTVNVYDTRSPDPVM 79 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~~~~~ 79 (239)
|.+.+.|+.|++||+.+++.+..+..+. .+.+++|+| ++..+ ++++.++.|++||..+++...
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~---------------~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~ 67 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQ---------------RPRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIG 67 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCC---------------CCCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEE
Confidence 4466789999999999999888888763 467899999 66655 677789999999999988777
Q ss_pred eecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCC-eEEEEEcc
Q psy11036 80 SVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH-HAKIYEMT 156 (239)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~i~d~~ 156 (239)
.+.....+..++++|+++.+++++ ++.+.+||++ ..+.+..+.. ...+.+++|+|+++.++++..++ .+.+||.+
T Consensus 68 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~-~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 68 TLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIE-TRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred eccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECC-CCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence 664444567889999999876654 6899999998 5666666653 34468899999999999888765 46677876
Q ss_pred -cceEeee--------------------e--cceeEEEEEccCCCEEEEEEeccc-------CcEEEEEEccCCCeEEE-
Q psy11036 157 -LKTVSSF--------------------T--GGLDVCIWDMLGGGKLLHKFTCHH-------KTVTSLCLASGGKRLIS- 205 (239)
Q Consensus 157 -~~~~~~~--------------------~--~~~~i~~~d~~~~~~~~~~~~~h~-------~~v~~~~~s~~~~~l~s- 205 (239)
.+..... . .++.+.+||+.+ .+.+..+..+. .....++|+|++++++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 146 TYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred CCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 3222111 1 245589999986 34444433221 12346889999998654
Q ss_pred EcCCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 206 ASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 206 ~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.+.++.+.+||+++++.+..+.....+.+++|+|
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 258 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTP 258 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEeCCCcceEEECC
Confidence 4567789999999999887777677899999987
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-25 Score=162.93 Aligned_cols=181 Identities=19% Similarity=0.320 Sum_probs=148.2
Q ss_pred EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEE
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVE 88 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~ 88 (239)
.|.|||.....+++.+.-.. +.|.++.|+|....+|++++.|+.|.+||+++..++..+-..-..+
T Consensus 168 ~i~IWD~~R~~Pv~smswG~--------------Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN 233 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMSWGA--------------DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN 233 (433)
T ss_pred eeeecccccCCccceeecCC--------------CceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc
Confidence 35566655555555555554 8899999999878899999999999999999999998886677788
Q ss_pred EEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecc
Q psy11036 89 SVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGG 166 (239)
Q Consensus 89 ~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~ 166 (239)
.++|+|++-.++++. |..+..||++.-..++....+|.+.|.++.|+|.|+.+++|+.|.+|+||..+ +..
T Consensus 234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S------- 306 (433)
T KOG0268|consen 234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS------- 306 (433)
T ss_pred ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc-------
Confidence 999999877777777 79999999998888999999999999999999999999999999999999988 111
Q ss_pred eeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeee
Q psy11036 167 LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPV 223 (239)
Q Consensus 167 ~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~ 223 (239)
....++ .--+.|.++.||.|.+++++||+|+.|++|.....+.+
T Consensus 307 -----------RdiYht--kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 307 -----------RDIYHT--KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred -----------hhhhhH--hhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 000100 01245899999999999999999999999987654443
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=170.44 Aligned_cols=196 Identities=20% Similarity=0.282 Sum_probs=163.3
Q ss_pred CCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEec---CCcEEEEeC-CCcEEEEEccCCC
Q psy11036 42 QDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLP---SGGIFVTGG-GLDVCIWDMLGGG 116 (239)
Q Consensus 42 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~---~~~~l~~~~-~~~i~~~d~~~~~ 116 (239)
+-.+.+++.+| ++++|++|..-|+++||++.+.+....+ .|+..|.|+.|+. ..++|++++ |.-|++||.....
T Consensus 459 r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 459 RFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred ccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 35799999999 8999999999999999999988777777 6999999999985 356788888 8999999998778
Q ss_pred eEEEEEeccCCceEEEEEcCCC--CEEEEEecCCeEEE------------------------EEcc----cceEeeeecc
Q psy11036 117 KLLHKFTCHHKTVTSLCLASGG--KRLISASLDHHAKI------------------------YEMT----LKTVSSFTGG 166 (239)
Q Consensus 117 ~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~i------------------------~d~~----~~~~~~~~~~ 166 (239)
.+++++.+|...|+++.|.-.| ..+++++.|..|.+ ||+. .+.+.+.+-+
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD 617 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD 617 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence 8899999999999999998877 67899998876543 3332 1222233456
Q ss_pred eeEEEEEccCCCEEEEEEec---ccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 167 LDVCIWDMLGGGKLLHKFTC---HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 167 ~~i~~~d~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
.+|++||+.+ ++..+.+++ |.+....+...|.|.||++.+.|+++.++|+.+|+++.++. |...|+.+.|.+
T Consensus 618 rnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 618 RNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred cceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc
Confidence 6799999987 555566654 66778899999999999999999999999999999998887 888999999865
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-24 Score=166.20 Aligned_cols=188 Identities=24% Similarity=0.424 Sum_probs=163.5
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N 82 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~ 82 (239)
-+.|+.|.+|......+..++++|+ ..|.++.... ++. +++||.|.++++|-... +...+ +
T Consensus 77 g~~D~~i~v~~~~~~~P~~~LkgH~--------------snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~--l~~~l~g 138 (745)
T KOG0301|consen 77 GGMDTTIIVFKLSQAEPLYTLKGHK--------------SNVCSLSIGE-DGT-LISGSWDSTAKVWRIGE--LVYSLQG 138 (745)
T ss_pred ecccceEEEEecCCCCchhhhhccc--------------cceeeeecCC-cCc-eEecccccceEEecchh--hhcccCC
Confidence 4678999999999999999999999 9999998776 444 99999999999998643 33345 7
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEe
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVS 161 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 161 (239)
|+..|.+++.-|++ .+++|+ |.+|++|. .++.++++.+|...|..+++-+++ .|++++.||.|++|++.
T Consensus 139 H~asVWAv~~l~e~-~~vTgsaDKtIklWk---~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~----- 208 (745)
T KOG0301|consen 139 HTASVWAVASLPEN-TYVTGSADKTIKLWK---GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD----- 208 (745)
T ss_pred cchheeeeeecCCC-cEEeccCcceeeecc---CCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEecc-----
Confidence 99999999999988 555555 99999998 477889999999999999998764 58899999999999987
Q ss_pred eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCC-CeeeeEe
Q psy11036 162 SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPS-PVLSIDV 237 (239)
Q Consensus 162 ~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-~v~~~~~ 237 (239)
++.+.++.+|+.-|.+++..++++.++++++|++++||+.. ++.+.+.+++ .++++.+
T Consensus 209 ----------------ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 209 ----------------GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV 267 (745)
T ss_pred ----------------CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence 67777779999999999988899999999999999999875 8889999777 7877764
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=159.64 Aligned_cols=200 Identities=16% Similarity=0.270 Sum_probs=166.1
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecC
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 83 (239)
.|..+.|+|||++.....+.+++|. +.|+++.++. ...+|++++..|.|.|..+.++.....+.+
T Consensus 97 gG~~~~Vkiwdl~~kl~hr~lkdh~--------------stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAKLIHRFLKDHQ--------------STVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred cCcCceeeehhhHHHHHhhhccCCc--------------ceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceec
Confidence 4677999999999777788899999 9999999998 789999999999999999999988888854
Q ss_pred --CCCEEEEEEecCCcEEEE-eC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEEcccc
Q psy11036 84 --GSPVESVLCLPSGGIFVT-GG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMTLK 158 (239)
Q Consensus 84 --~~~v~~~~~~~~~~~l~~-~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~ 158 (239)
...|.-+.|+|..+.+++ ++ +|.|.+||+........-...|..+...|+|+| +..+|++.+.|..|.+||.+
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~-- 239 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR-- 239 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc--
Confidence 456678999997776554 44 599999999844455556678999999999999 45788999999999999988
Q ss_pred eEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC-CeeeEEec-CCCCeeeeE
Q psy11036 159 TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN-FSPVHTLD-YPSPVLSID 236 (239)
Q Consensus 159 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~ 236 (239)
.......+ ....+.+.++|+++|.+|+.|...|.|..||++. ..++..+. |...|++++
T Consensus 240 ------------------s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 240 ------------------SQASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA 300 (673)
T ss_pred ------------------ccccccee-eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence 22222222 2367889999999999999999999999999975 56777776 888999999
Q ss_pred ecC
Q psy11036 237 VSM 239 (239)
Q Consensus 237 ~sp 239 (239)
|-|
T Consensus 301 fq~ 303 (673)
T KOG4378|consen 301 FQP 303 (673)
T ss_pred eee
Confidence 954
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=171.33 Aligned_cols=176 Identities=20% Similarity=0.301 Sum_probs=150.0
Q ss_pred CCeEEEEEecCCCCEEEEee--CCCeEEEEeCCC------------CCceeee-cCCCCEEEEEEecCCcEEEEeC-CCc
Q psy11036 43 DYVRAGTVSPVSSDIVISGS--YDKTVNVYDTRS------------PDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLD 106 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~--~dg~v~vw~~~~------------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~ 106 (239)
..|.+++.+| ++..+++|+ .|+.+++|+... .+.+.++ .|.+.|.|+.|+|||++||+|+ |+.
T Consensus 14 ~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 14 KSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred eeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 6799999999 899999999 899999998642 1122333 5899999999999999999999 588
Q ss_pred EEEEEccC-----------------CCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeE
Q psy11036 107 VCIWDMLG-----------------GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDV 169 (239)
Q Consensus 107 i~~~d~~~-----------------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i 169 (239)
|.+|.... ..+.+..+.+|.+.|..++|+|++.+|++++.|++|.||+.+
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~------------- 159 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK------------- 159 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc-------------
Confidence 89998761 123567788999999999999999999999999999999988
Q ss_pred EEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-------CCCCeeeeEecC
Q psy11036 170 CIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-------YPSPVLSIDVSM 239 (239)
Q Consensus 170 ~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~sp 239 (239)
..+.+..+.+|.+.|..+.|.|-|+|||+-++|++|+||+..+....+.+. ......-++|||
T Consensus 160 -------tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 160 -------TFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred -------cceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC
Confidence 457778889999999999999999999999999999999988777766664 234678888887
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=155.70 Aligned_cols=190 Identities=22% Similarity=0.310 Sum_probs=150.4
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc-eeee
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP-VMSV 81 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~-~~~~ 81 (239)
+.+.|.+|.+||+.++++..++..|. +.|.+++|+|..+..|++|+.|++|.+.|.+.... -..+
T Consensus 261 SgsaD~TV~lWD~~~g~p~~s~~~~~--------------k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w 326 (463)
T KOG0270|consen 261 SGSADKTVKLWDVDTGKPKSSITHHG--------------KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW 326 (463)
T ss_pred ecCCCceEEEEEcCCCCcceehhhcC--------------CceeEEEecCCCceEEEeccccceEEeeeccCccccCceE
Confidence 45789999999999999999999998 99999999998899999999999999999985332 3344
Q ss_pred cCCCCEEEEEEecCCcE-EEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEEcccc
Q psy11036 82 NHGSPVESVLCLPSGGI-FVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMTLK 158 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~-l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~ 158 (239)
...+.|..++|.|.... ++++. ||.++-+|+|..++++.++++|.++|.++++++.- .++++++.|+.|++|++...
T Consensus 327 k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 327 KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 67889999999996554 44444 79999999998889999999999999999998854 57889999999999999811
Q ss_pred eEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC-eEEEEcCCceEEEEEccCCeeeE
Q psy11036 159 TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISASLDHHAKIYEMVNFSPVH 224 (239)
Q Consensus 159 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~ 224 (239)
....+..-.---+...|.++.|+-. +|+.|+..+.++|||+.+..++.
T Consensus 407 ------------------~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 407 ------------------SPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred ------------------CCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 1111110000112256677777654 56778888899999998876653
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=150.33 Aligned_cols=208 Identities=18% Similarity=0.267 Sum_probs=157.7
Q ss_pred CCCCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeC-CCCCcee
Q psy11036 1 MSHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDT-RSPDPVM 79 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~-~~~~~~~ 79 (239)
|...+++.-|.+||.-+|+....+.+-..+-.. ....+++|+| ++.+|++| ....|+++|+ +.|.-..
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~---------taAhsL~Fs~-DGeqlfaG-ykrcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEY---------TAAHSLQFSP-DGEQLFAG-YKRCIRVFDTSRPGRDCP 194 (406)
T ss_pred eeeccccCceeeeeccccccccchhhhhhHHhh---------hhheeEEecC-CCCeEeec-ccceEEEeeccCCCCCCc
Confidence 445678899999999999988887653211000 3456899999 78888865 5689999999 5553221
Q ss_pred ---ee-----cCCCCEEEEEEecCCc-EEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec-CC
Q psy11036 80 ---SV-----NHGSPVESVLCLPSGG-IFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL-DH 148 (239)
Q Consensus 80 ---~~-----~~~~~v~~~~~~~~~~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~ 148 (239)
++ +..+-+.+++|+|... .+++++ ...+-||.-. ...++..+.+|.+.|+.++|.++|+.|.+|.. |.
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~d 273 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDD 273 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC-CCCceeeecccCCCeeeEEeccCcCeecccccCCC
Confidence 22 2367789999999655 777777 5778888777 78888899999999999999999999999876 66
Q ss_pred eEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccC-cEEEE--EEccCCCeEEEEcCCceEEEEEccC-CeeeE
Q psy11036 149 HAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHK-TVTSL--CLASGGKRLISASLDHHAKIYEMVN-FSPVH 224 (239)
Q Consensus 149 ~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~-~v~~~--~~s~~~~~l~s~s~d~~i~iwd~~~-~~~~~ 224 (239)
.|.+||++ ....++..+..|.. .-..+ ...|++++|++|+.||.|++||+++ +....
T Consensus 274 kIl~WDiR-------------------~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 274 KILCWDIR-------------------YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS 334 (406)
T ss_pred eEEEEeeh-------------------hccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence 77777776 33555555666655 33333 4468899999999999999999988 67566
Q ss_pred Eec-CCCCeeeeEecC
Q psy11036 225 TLD-YPSPVLSIDVSM 239 (239)
Q Consensus 225 ~~~-~~~~v~~~~~sp 239 (239)
.+. +...++.++++|
T Consensus 335 v~~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 335 VTGNYSDTVNGVSLNP 350 (406)
T ss_pred ccccccccccceecCc
Confidence 655 778899999887
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=155.41 Aligned_cols=204 Identities=20% Similarity=0.349 Sum_probs=166.8
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee-CCCeEEEEeCCCCCcee-eecCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS-YDKTVNVYDTRSPDPVM-SVNHG 84 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~vw~~~~~~~~~-~~~~~ 84 (239)
...+.+||+++|....++++... ..-.++..- ++++++++. .-..+.+|.+....... ..-.+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~-------------a~~~sl~~l--~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~P 81 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYL-------------AQAASLTAL--NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLP 81 (476)
T ss_pred CcceeEEecCCCceeEEecCccc-------------ccchhhhhh--chhheeeecccCccccccccCchhhhhhhcccc
Confidence 46799999999999988887621 222233222 335555554 44578899987665544 33578
Q ss_pred CCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeee
Q psy11036 85 SPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSF 163 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 163 (239)
+++.+++-+|+|.+++.|+ .|.+++|.+. ++..+..+.+|-..|+++.|+.||.+|++|+.||.|.+|.+.
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWels-sG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~------- 153 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELS-SGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT------- 153 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEec-cccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE-------
Confidence 9999999999999999997 7999999999 899999999999999999999999999999999999999986
Q ss_pred ecceeEEEEEc--cCCCEEEEEEecccCcEEEEEEccC--CCeEEEEcCCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 164 TGGLDVCIWDM--LGGGKLLHKFTCHHKTVTSLCLASG--GKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 164 ~~~~~i~~~d~--~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.+.+. +...++.+.+..|.-+|+++...+. ..+|+|+|.|.++++||+..+..+.++..+.++.+++..|
T Consensus 154 ------~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp 227 (476)
T KOG0646|consen 154 ------DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP 227 (476)
T ss_pred ------eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc
Confidence 11111 1146788899999999999988764 4689999999999999999999999999999999999877
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-24 Score=175.86 Aligned_cols=201 Identities=17% Similarity=0.219 Sum_probs=161.2
Q ss_pred CCCCEEEEeeCCC---c---ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce
Q psy11036 5 LPILIVALWDIPS---E---AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV 78 (239)
Q Consensus 5 ~~dg~i~vwd~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~ 78 (239)
+.||.|.+||... + ..+.+...|. +.|..+.|++..+++|++|+.||.|.|||+.+.+..
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~--------------G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP 152 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHT--------------GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP 152 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccC--------------CceeeeeccccCCceeeccCCCCcEEEeccCCcCCC
Confidence 4689999999765 2 3455677788 999999999988889999999999999999886654
Q ss_pred eee---cCCCCEEEEEEecCC-cEEEEeC-CCcEEEEEccCCCeEEEEEeccCC--ceEEEEEcCCC-CEEEEEecCC--
Q psy11036 79 MSV---NHGSPVESVLCLPSG-GIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHK--TVTSLCLASGG-KRLISASLDH-- 148 (239)
Q Consensus 79 ~~~---~~~~~v~~~~~~~~~-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~--~i~~i~~~~~~-~~l~~~~~d~-- 148 (239)
... ...+.|.+++|+..- +.|++++ +|...|||++ ..+++-.+..+.. .+..++|+|+. ..+++++.|.
T Consensus 153 ~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr-~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~ 231 (1049)
T KOG0307|consen 153 FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR-KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSA 231 (1049)
T ss_pred CCCCCCCCcccceEeccchhhhHHhhccCCCCCceecccc-CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCC
Confidence 444 256789999999854 4556666 5899999999 5566656655444 57899999987 4566666654
Q ss_pred -eEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC-CeEEEEcCCceEEEEEccCCeeeEEe
Q psy11036 149 -HAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMVNFSPVHTL 226 (239)
Q Consensus 149 -~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~ 226 (239)
.|.+||+| ....+++.+++|...|.++.|++.+ .+|+|++.|++|.+|+..+++.+..+
T Consensus 232 PviqlWDlR-------------------~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 232 PVIQLWDLR-------------------FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL 292 (1049)
T ss_pred ceeEeeccc-------------------ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence 45555554 5567778889999999999999955 89999999999999999999999999
Q ss_pred c-CCCCeeeeEecC
Q psy11036 227 D-YPSPVLSIDVSM 239 (239)
Q Consensus 227 ~-~~~~v~~~~~sp 239 (239)
. ....+..+.|+|
T Consensus 293 p~~~nW~fdv~w~p 306 (1049)
T KOG0307|consen 293 PAQGNWCFDVQWCP 306 (1049)
T ss_pred CCCCcceeeeeecC
Confidence 8 566899999987
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=152.44 Aligned_cols=195 Identities=13% Similarity=0.213 Sum_probs=162.3
Q ss_pred CCCCEEEEeeCCCcceee-eeeC------Cceeeccceeec-cCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC
Q psy11036 5 LPILIVALWDIPSEAQVS-TFTN------HTTIYKVPLMLY-STPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD 76 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~-~~~~------~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 76 (239)
+.+|+|.-|++.+++... .++. |.. +...- ..|...+.+++.++ ++.+|++|+.|..|.||+..+.+
T Consensus 161 sk~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~----~~k~~r~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~e 235 (479)
T KOG0299|consen 161 SKDGTILKWDVLTGKKDRYIIERDEVLKSHGN----PLKESRKGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLE 235 (479)
T ss_pred CCCcceeeeehhcCcccccccccchhhhhccC----CCCcccccccceeEEEEEcC-CCcEEEecCCCceEEEecCcccc
Confidence 567899999998887542 2222 221 11111 14558899999999 89999999999999999999999
Q ss_pred ceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEE
Q psy11036 77 PVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 154 (239)
Q Consensus 77 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d 154 (239)
.+..+ .|.+.|.+++|-.....+++++ |+.+++|++. ....+.++.+|...|..|....-++.+.+|+.|.++++|+
T Consensus 236 hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwK 314 (479)
T KOG0299|consen 236 HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-QLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWK 314 (479)
T ss_pred hhhcccccccceeeeeeecCccceeeeecCCceEEEehh-HhHHHHHHhCCccceeeechhcccceEEeccccceeEEEe
Confidence 99998 7999999999998877788777 9999999998 7778888999999999999888888888888999999999
Q ss_pred cccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 155 MTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
+. .+....+.+|.+.+-|++|-. ...+++||.||.|.+|++.+.+++.+.+
T Consensus 315 i~---------------------eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 315 IP---------------------EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred cc---------------------ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEee
Confidence 87 344445678888999999974 5679999999999999999999988775
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-24 Score=170.79 Aligned_cols=175 Identities=23% Similarity=0.374 Sum_probs=160.1
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
..+.++..-. ..+.+++|+.|..+-+|.+.....+..+ .|..+|.++.|++...++++|. +|+|++||++ ..+.++
T Consensus 29 aav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~vr 106 (825)
T KOG0267|consen 29 AAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVR 106 (825)
T ss_pred hhhceeeeec-cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh-hhhhhh
Confidence 7777887755 7889999999999999999887777776 7999999999999999998888 7999999999 888899
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG 200 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~ 200 (239)
++.+|...+.++.|+|-+.+.+.|+.|+.+++||.+ ..-+.+.+.+|...|..+.|+|+|
T Consensus 107 tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R--------------------k~Gc~~~~~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 107 TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR--------------------KKGCSHTYKSHTRVVDVLRLSPDG 166 (825)
T ss_pred hhhccccCcceeeeccceEEeccccccccceehhhh--------------------ccCceeeecCCcceeEEEeecCCC
Confidence 999999999999999999999999999999999998 455666678899999999999999
Q ss_pred CeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 201 KRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 201 ~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
++++++++|..++|||+..|+.+..|+ |...+.++.|+|
T Consensus 167 r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp 206 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP 206 (825)
T ss_pred ceeeccCCcceeeeecccccccccccccccccccccccCc
Confidence 999999999999999999999999999 899999999987
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=150.72 Aligned_cols=159 Identities=20% Similarity=0.275 Sum_probs=133.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCCCEEEEEEecC-CcEEEEeC-CCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPS-GGIFVTGG-GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~-~~~i~~~d~~~~~~~~ 119 (239)
+.|..++|+..-.+.|++||.|.+|++||+.++++...+. |...|.++.|+|. ...+++|+ |+++.+.|.|.....-
T Consensus 244 davl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 244 DAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG 323 (463)
T ss_pred HHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC
Confidence 7888999998777899999999999999999999999995 8899999999995 56777777 8999999999544333
Q ss_pred EEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc
Q psy11036 120 HKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS 198 (239)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~ 198 (239)
..++ ..+.|-.++|.|.. ..++++..||+++-+|+| ..++++.+++.|.++|.++++++
T Consensus 324 ~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R-------------------~~~~~vwt~~AHd~~ISgl~~n~ 383 (463)
T KOG0270|consen 324 KEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR-------------------NPGKPVWTLKAHDDEISGLSVNI 383 (463)
T ss_pred ceEE-eccceEEEEecCCCceeEEEecCCceEEeeecC-------------------CCCCceeEEEeccCCcceEEecC
Confidence 3444 46789999999965 567788899999988887 34688888899999999999998
Q ss_pred C-CCeEEEEcCCceEEEEEccCCe
Q psy11036 199 G-GKRLISASLDHHAKIYEMVNFS 221 (239)
Q Consensus 199 ~-~~~l~s~s~d~~i~iwd~~~~~ 221 (239)
. -.+|+|++.|+.|++|++..-.
T Consensus 384 ~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 384 QTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred CCCcceeeccccceEEEEeecCCC
Confidence 5 4578899999999999986433
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=148.83 Aligned_cols=184 Identities=21% Similarity=0.333 Sum_probs=137.6
Q ss_pred CEEEEeeCCCcce---eeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc---eeee
Q psy11036 8 LIVALWDIPSEAQ---VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP---VMSV 81 (239)
Q Consensus 8 g~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~---~~~~ 81 (239)
+.|++|...++.- ...|.+|+ ..|..++|+|.....|++|+.||+|+|||++.+.. +.+-
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~--------------~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHT--------------KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred cceEeeeeccCceeecCccccccc--------------cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee
Confidence 6788888776542 23455676 99999999998888999999999999999998843 3333
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccC--CCeEEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEEccc
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLG--GGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMTL 157 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~--~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~ 157 (239)
.|.+.|+.+.|+....+|++|+ +|+++|||++. .++++..++.|..+|+++.|+|.. ..|++++.|.+|.+||+.-
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 6999999999999888899998 59999999983 357889999999999999999954 6788999999999999971
Q ss_pred ce----EeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC-CCeEEEEcCCce
Q psy11036 158 KT----VSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG-GKRLISASLDHH 211 (239)
Q Consensus 158 ~~----~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~ 211 (239)
+. ........ +-|+ ..+++..-++ +..+..+.|++. ..+|++.+.||.
T Consensus 380 E~D~ee~~~~a~~~---L~dl--PpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 380 EADEEEIDQEAAEG---LQDL--PPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cCChhhhccccccc---hhcC--CceeEEEecc-hhHhhhheeccCCCCeEEEecccce
Confidence 11 00000000 0011 1233333223 567889999985 457888888884
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-21 Score=132.52 Aligned_cols=178 Identities=20% Similarity=0.306 Sum_probs=152.2
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec----
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN---- 82 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~---- 82 (239)
|-.|++-|-.+|+..+.+.+|. +-|.++.-- ++-.+++|+.|.+|++||++-..++.++.
T Consensus 162 dc~iy~tdc~~g~~~~a~sght--------------ghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~ 225 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHT--------------GHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH 225 (350)
T ss_pred cceEEEeecCCCCcceeecCCc--------------ccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCccc
Confidence 4567777777888888888888 888887432 57899999999999999999888888773
Q ss_pred ----CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEccc
Q psy11036 83 ----HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTL 157 (239)
Q Consensus 83 ----~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 157 (239)
....|.+++..|.|+++++|. |....+||++ .+++++.+..|...|.++.|+|.-.++++++.|..|++-|+++
T Consensus 226 ~~glessavaav~vdpsgrll~sg~~dssc~lydir-g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 226 DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR-GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CCCcccceeEEEEECCCcceeeeccCCCceEEEEee-CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 235789999999999999998 7899999999 8999999999999999999999999999999999999999984
Q ss_pred ceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 158 KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 158 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
....+ -++.....|...+..+.|+|..-.+++.+.|.++.+|-+
T Consensus 305 dla~e----------------l~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 305 DLAHE----------------LPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred chhhc----------------CceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 33222 234445678888999999999989999999999999975
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=157.18 Aligned_cols=192 Identities=19% Similarity=0.356 Sum_probs=162.1
Q ss_pred CCCCCCEEEEeeCCCcceee--eeeCCceeeccceeeccCCCCCeEE-EEEecCCCCEEEEeeCCCeEEEEeCCCCCcee
Q psy11036 3 HDLPILIVALWDIPSEAQVS--TFTNHTTIYKVPLMLYSTPQDYVRA-GTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM 79 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 79 (239)
+.++||++++|+-..++.+. .+.+|. +.|.+ +++.+.++..+++|+.|+++.+|...+..+..
T Consensus 30 s~sRd~t~~vw~~~~~~~l~~~~~~~~~--------------g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~ 95 (745)
T KOG0301|consen 30 SGSRDGTVKVWAKKGKQYLETHAFEGPK--------------GFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLY 95 (745)
T ss_pred ecCCCCceeeeeccCcccccceecccCc--------------ceeeccceeccccCcceEeecccceEEEEecCCCCchh
Confidence 34679999999976555433 456665 77776 78876456679999999999999999999999
Q ss_pred ee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEccc
Q psy11036 80 SV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTL 157 (239)
Q Consensus 80 ~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 157 (239)
.+ +|+..|.+++...++. +++|+ |.++++|.. ++....+.+|...|.+++.-|++ .+++|+.|.+|++|.
T Consensus 96 ~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~---~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk--- 167 (745)
T KOG0301|consen 96 TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI---GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWK--- 167 (745)
T ss_pred hhhccccceeeeecCCcCc-eEecccccceEEecc---hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeecc---
Confidence 88 7999999999888777 88888 999999985 56667799999999999999987 889999999999997
Q ss_pred ceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeE
Q psy11036 158 KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSID 236 (239)
Q Consensus 158 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~ 236 (239)
.++.+.++.+|..-|+.+++-+++ .+++++.||.|+.|++ +|+.+.++. |.+-+.+++
T Consensus 168 -------------------~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 168 -------------------GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred -------------------CCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEE
Confidence 467788889999999999998765 4789999999999999 677776665 888888887
Q ss_pred e
Q psy11036 237 V 237 (239)
Q Consensus 237 ~ 237 (239)
.
T Consensus 227 ~ 227 (745)
T KOG0301|consen 227 M 227 (745)
T ss_pred e
Confidence 3
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-23 Score=152.40 Aligned_cols=193 Identities=18% Similarity=0.263 Sum_probs=163.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC--ceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD--PVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~ 118 (239)
+.+..+.|-+ +...|++|+.|..|++|++...+ ...++ +..++++.+.|.++++.+++++ |+.+++|++. ..+.
T Consensus 176 gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd-~~r~ 253 (459)
T KOG0288|consen 176 GEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD-SLRL 253 (459)
T ss_pred cccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc-chhh
Confidence 9999999999 78899999999999999997666 44455 5778999999999998888877 8999999998 8889
Q ss_pred EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee-----------------ecce--eEEEEEccCCC
Q psy11036 119 LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF-----------------TGGL--DVCIWDMLGGG 178 (239)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~-----------------~~~~--~i~~~d~~~~~ 178 (239)
.+++.+|.+.|+++.|......+++|+.|.+|++||+. ..+..++ +|+. .|++||++. .
T Consensus 254 ~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs-~ 332 (459)
T KOG0288|consen 254 RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRS-A 332 (459)
T ss_pred hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccC-C
Confidence 99999999999999998776669999999999999998 5554443 3333 399999987 5
Q ss_pred EEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-----CCCCeeeeEecC
Q psy11036 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-----YPSPVLSIDVSM 239 (239)
Q Consensus 179 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~sp 239 (239)
.+..+...+ +.|+++..++++..|.+++.|.++.+.|+++.+....+. .....+.+.|||
T Consensus 333 ~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 333 DKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred ceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence 556666664 489999999999999999999999999999998887775 334577888887
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=138.17 Aligned_cols=201 Identities=17% Similarity=0.294 Sum_probs=162.3
Q ss_pred CCCCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCC--CCEEEEeeCCCeEEEEeCCCCCce
Q psy11036 1 MSHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVS--SDIVISGSYDKTVNVYDTRSPDPV 78 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~v~vw~~~~~~~~ 78 (239)
|-+.+-|.+++|||..+.+....|+-. +.|++-+++|-. ..++++|..|-.|++.|+.+|...
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me---------------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s 181 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKME---------------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS 181 (397)
T ss_pred eecccccceEEEeecccceeeEEeecC---------------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce
Confidence 445567899999999999988888766 779999998853 347788888999999999999999
Q ss_pred eee-cCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEE--------------EeccCCceEEEEEcCCCCEE
Q psy11036 79 MSV-NHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHK--------------FTCHHKTVTSLCLASGGKRL 141 (239)
Q Consensus 79 ~~~-~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~--------------~~~~~~~i~~i~~~~~~~~l 141 (239)
..+ +|...|.++.|+|...++++.+ ||.|++||++.....+.. -.+|.+.+..++|..++.++
T Consensus 182 H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l 261 (397)
T KOG4283|consen 182 HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL 261 (397)
T ss_pred eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence 998 7999999999999887765544 899999999843222222 33677889999999999999
Q ss_pred EEEecCCeEEEEEcc-cc-eEeee--------------------------ecceeEEEEEccCCCEEEEEEecccCcEEE
Q psy11036 142 ISASLDHHAKIYEMT-LK-TVSSF--------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTS 193 (239)
Q Consensus 142 ~~~~~d~~i~i~d~~-~~-~~~~~--------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~ 193 (239)
++++.|..+++|+.. ++ .+..+ ..++.+.++++-. +..+..+..|-..|.+
T Consensus 262 ~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~s-gs~ir~l~~h~k~i~c 340 (397)
T KOG4283|consen 262 ASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLE-GSFVRRLSTHLKRINC 340 (397)
T ss_pred hhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccC-ceEEEeeecccceeeE
Confidence 999999999999987 22 12211 1234466666654 6778888999889999
Q ss_pred EEEccCCCeEEEEcCCceEEEEEc
Q psy11036 194 LCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 194 ~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
..+.|+-+...++..|+.|..|-.
T Consensus 341 ~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 341 AAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EeecCchhhhhccccCCccccccc
Confidence 999999999999999999999976
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-21 Score=135.92 Aligned_cols=195 Identities=17% Similarity=0.262 Sum_probs=151.3
Q ss_pred CCeEEEEEecCC----CCEEEEeeCCCeEEEEeCCCCCc----eeee------cCCCCEEEEEEec-CCcEEEEeC-CCc
Q psy11036 43 DYVRAGTVSPVS----SDIVISGSYDKTVNVYDTRSPDP----VMSV------NHGSPVESVLCLP-SGGIFVTGG-GLD 106 (239)
Q Consensus 43 ~~v~~~~~~~~~----~~~l~s~~~dg~v~vw~~~~~~~----~~~~------~~~~~v~~~~~~~-~~~~l~~~~-~~~ 106 (239)
-+++.+.|.|+. .++|++.+ ..+|+|.+...+. ...+ .+..++++..|+. +-+++.+++ |-+
T Consensus 97 YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT 174 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT 174 (364)
T ss_pred CCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe
Confidence 789999999942 24666554 4799999874221 1111 2667899999987 455666666 899
Q ss_pred EEEEEccCC--CeEEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEEccc----ceEee----------e------
Q psy11036 107 VCIWDMLGG--GKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMTL----KTVSS----------F------ 163 (239)
Q Consensus 107 i~~~d~~~~--~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~----~~~~~----------~------ 163 (239)
..+||++.. +.....+-+|..+|..++|...+ +.||+.+.||.+++||++. ..+.+ +
T Consensus 175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 999999842 33466778899999999999866 5899999999999999982 11111 1
Q ss_pred --------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEcCCceEEEEEccCC------eeeEEecC
Q psy11036 164 --------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMVNF------SPVHTLDY 228 (239)
Q Consensus 164 --------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~------~~~~~~~~ 228 (239)
..+..|.+.|++....++..+++|.+.|..++|.| ....|+|+++|..+.|||+.+. .++..+..
T Consensus 255 pnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a 334 (364)
T KOG0290|consen 255 PNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA 334 (364)
T ss_pred chHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc
Confidence 34666999999999999999999999999999999 4678999999999999999653 23445557
Q ss_pred CCCeeeeEecC
Q psy11036 229 PSPVLSIDVSM 239 (239)
Q Consensus 229 ~~~v~~~~~sp 239 (239)
.+.|+.+.|+|
T Consensus 335 ~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 335 GGEVNQIQWSS 345 (364)
T ss_pred cceeeeeeecc
Confidence 78899999985
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-20 Score=146.20 Aligned_cols=216 Identities=16% Similarity=0.253 Sum_probs=171.4
Q ss_pred CCCEEEEeeCCCcce-eeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 6 PILIVALWDIPSEAQ-VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
.+|.|.+|++..+-. ...+.++.. ..|.+++|++ +..|++.+.+|.|.-||+.++++...+ ..
T Consensus 45 t~g~IEiwN~~~~w~~~~vi~g~~d-------------rsIE~L~W~e--~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~ 109 (691)
T KOG2048|consen 45 TDGNIEIWNLSNNWFLEPVIHGPED-------------RSIESLAWAE--GGRLFSSGLSGSITEWDLHTLKQKYNIDSN 109 (691)
T ss_pred cCCcEEEEccCCCceeeEEEecCCC-------------CceeeEEEcc--CCeEEeecCCceEEEEecccCceeEEecCC
Confidence 579999999987643 345666553 7899999995 567788889999999999999998888 57
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE--EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cce
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH--KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 159 (239)
.+.|.+++.+|.+..++.|+ ||.+..++.. .++... .+....+.|.+++|+|++..++.|+.||.|++||.. +..
T Consensus 110 gg~IWsiai~p~~~~l~IgcddGvl~~~s~~-p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 110 GGAIWSIAINPENTILAIGCDDGVLYDFSIG-PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred CcceeEEEeCCccceEEeecCCceEEEEecC-CceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence 78999999999999999997 6867777765 444332 233456899999999999999999999999999998 554
Q ss_pred Eeee---------------------------e--cceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc
Q psy11036 160 VSSF---------------------------T--GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH 210 (239)
Q Consensus 160 ~~~~---------------------------~--~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~ 210 (239)
+... + ..+.|.+||... +.++.....|...|.+++..+++..+++++.|+
T Consensus 189 ~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~-gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 189 LHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIF-GTLIQSHSCHDADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred EEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccC-cchhhhhhhhhcceeEEEEcCCCCeEEEccCCC
Confidence 4411 2 234589999876 777888889999999999999999999999999
Q ss_pred eEEEEEccCCee-----eEEecCCCCeeeeEec
Q psy11036 211 HAKIYEMVNFSP-----VHTLDYPSPVLSIDVS 238 (239)
Q Consensus 211 ~i~iwd~~~~~~-----~~~~~~~~~v~~~~~s 238 (239)
.|.-|...+.+. ....-|...|.+++..
T Consensus 268 ~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~ 300 (691)
T KOG2048|consen 268 KIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVI 300 (691)
T ss_pred ceEEEEecCCccceeeeccccCCcccceeeeee
Confidence 999998876643 1111266677777753
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=141.04 Aligned_cols=175 Identities=18% Similarity=0.271 Sum_probs=134.8
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc-----eeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP-----VMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGG 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~ 115 (239)
+.|++++|+. +|..|++++.|+.|++|+++.... ++.--.-+..+.+.|.||.+-+++.. ...+++|.+...
T Consensus 87 ~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~ 165 (420)
T KOG2096|consen 87 KEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKK 165 (420)
T ss_pred CceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeec
Confidence 9999999999 899999999999999999986432 11111223678899999988777665 578999987522
Q ss_pred Ce--E---------EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeee--------------------
Q psy11036 116 GK--L---------LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFT-------------------- 164 (239)
Q Consensus 116 ~~--~---------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------------------- 164 (239)
.. . .+.-+.|+-.+..+-....+.+|++++.|..|.+|+++++.+..+.
T Consensus 166 ~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~ 245 (420)
T KOG2096|consen 166 TDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAV 245 (420)
T ss_pred ccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEE
Confidence 11 0 1111235667777878778899999999999999999988777661
Q ss_pred -c-ceeEEEEEccCC-------CEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 165 -G-GLDVCIWDMLGG-------GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 165 -~-~~~i~~~d~~~~-------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
| ..++.+|.+--+ -..+..+++|..+|..++|+++.+.++|.|.||+++|||..
T Consensus 246 ~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 246 SGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 1 234888886321 23456789999999999999999999999999999999974
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-22 Score=157.50 Aligned_cols=176 Identities=18% Similarity=0.319 Sum_probs=154.3
Q ss_pred CCCEEEEeeCCCcceeeee---eCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec
Q psy11036 6 PILIVALWDIPSEAQVSTF---TNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 82 (239)
+.|.|-+||+.+|.....| +.|. ++|++++... -++.+++++.+|.+++||..+......+.
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~--------------~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~ 532 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHK--------------GEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR 532 (910)
T ss_pred cCCeEEEEEcccCeeecccccCcccc--------------CceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeec
Confidence 4589999999999988888 4777 9999999987 67899999999999999999988888888
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEe
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVS 161 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 161 (239)
....+.++..+.....++.+. +-.|.++|.. +.+.++.+.+|.+.|++++|+|||++|++++.|++|++||+.
T Consensus 533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~-t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp----- 606 (910)
T KOG1539|consen 533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDVV-TRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP----- 606 (910)
T ss_pred cCCCcceeeeeehhhhhhhhcCceeEEEEEch-hhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc-----
Confidence 888899999998877787777 6889999998 888999999999999999999999999999999999999998
Q ss_pred eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCC-ceEEEEEcc
Q psy11036 162 SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD-HHAKIYEMV 218 (239)
Q Consensus 162 ~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-~~i~iwd~~ 218 (239)
.+.++..+.- ..+.+.+.|||+|.+|||...| .-|++|--.
T Consensus 607 ---------------t~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 607 ---------------TGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ---------------CcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 3444444433 5678999999999999999988 569999643
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=143.20 Aligned_cols=195 Identities=19% Similarity=0.288 Sum_probs=147.6
Q ss_pred CCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-------ceeee-cCCCCEEEEEEecCC-cEEEEeC-CCcEEE
Q psy11036 40 TPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD-------PVMSV-NHGSPVESVLCLPSG-GIFVTGG-GLDVCI 109 (239)
Q Consensus 40 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-------~~~~~-~~~~~v~~~~~~~~~-~~l~~~~-~~~i~~ 109 (239)
.|.++|..++|+|.+.+.|++|+.|.+|+||.+..+. ++..+ +|...|--++|+|.. +.|++++ |..|.+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i 158 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI 158 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence 3349999999999999999999999999999987543 34445 699999999999954 4455555 899999
Q ss_pred EEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee-------------------------
Q psy11036 110 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF------------------------- 163 (239)
Q Consensus 110 ~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~------------------------- 163 (239)
|++. +++.+.++. |...|.+++|+.+|.+|++.+.|..|+|||.+ ++.+...
T Consensus 159 Wnv~-tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfs 236 (472)
T KOG0303|consen 159 WNVG-TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFS 236 (472)
T ss_pred Eecc-CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccc
Confidence 9999 788777777 99999999999999999999999999999998 6555543
Q ss_pred -ecceeEEEEEccCCCEEEE--EEecccCcEEEEEEccCCCeE-EEEcCCceEEEEEccCCee----eEEecCCCCeeee
Q psy11036 164 -TGGLDVCIWDMLGGGKLLH--KFTCHHKTVTSLCLASGGKRL-ISASLDHHAKIYEMVNFSP----VHTLDYPSPVLSI 235 (239)
Q Consensus 164 -~~~~~i~~~d~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l-~s~s~d~~i~iwd~~~~~~----~~~~~~~~~v~~~ 235 (239)
.+..++.+||..+-.+++. ++.. .+.|.---|.||...+ ++|-.|+.||.|++..-.+ +.++....+-..|
T Consensus 237 r~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~ 315 (472)
T KOG0303|consen 237 RMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGM 315 (472)
T ss_pred cccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccc
Confidence 1244588998876554433 3333 3456555677777766 4566899999999977653 3344444444444
Q ss_pred Ee
Q psy11036 236 DV 237 (239)
Q Consensus 236 ~~ 237 (239)
.|
T Consensus 316 g~ 317 (472)
T KOG0303|consen 316 GF 317 (472)
T ss_pred cc
Confidence 44
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=144.32 Aligned_cols=199 Identities=17% Similarity=0.212 Sum_probs=158.9
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee--
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-- 81 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-- 81 (239)
.|..|.|+|.|+.+++....+.+|. ..|..+.++|...+++++++.|..||+||+++..++..+
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG--------------~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHG--------------GSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred ecceeEEEEEecchhhhccceeccC--------------ccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 4667999999999999999999999 999999999988899999999999999999999999988
Q ss_pred --cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCC--e-------------------------EEEEEeccCCceEE
Q psy11036 82 --NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGG--K-------------------------LLHKFTCHHKTVTS 131 (239)
Q Consensus 82 --~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~--~-------------------------~~~~~~~~~~~i~~ 131 (239)
+|...|.++.|+++|.++++++ |..+++|++.... . ...+-..|...|.|
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 4999999999999999999999 9999999996110 0 00122346777777
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEc-c-cceE-------------eee------------------------ecceeEEEE
Q psy11036 132 LCLASGGKRLISASLDHHAKIYEM-T-LKTV-------------SSF------------------------TGGLDVCIW 172 (239)
Q Consensus 132 i~~~~~~~~l~~~~~d~~i~i~d~-~-~~~~-------------~~~------------------------~~~~~i~~~ 172 (239)
+.|- |+++++-+.++.|..|.. + .+.+ .++ ...+.+.+|
T Consensus 257 vrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 257 VRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred HHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 7774 678999999999999987 2 2221 111 235569999
Q ss_pred EccCCCEEEE-EEec--ccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 173 DMLGGGKLLH-KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 173 d~~~~~~~~~-~~~~--h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
|++....+.. ++.. ....|...+|+.|+.+|+..++|++|.-||..
T Consensus 335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9987554322 2221 23568999999999999999999999999864
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-21 Score=136.27 Aligned_cols=220 Identities=16% Similarity=0.162 Sum_probs=154.7
Q ss_pred CCCCCCCEEEEeeCCCc----ceeeeeeCCceeeccceeeccCCCCCeEEEEEec-CCCCEEEEeeCCCeEEEEeCCCC-
Q psy11036 2 SHDLPILIVALWDIPSE----AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSP-VSSDIVISGSYDKTVNVYDTRSP- 75 (239)
Q Consensus 2 s~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~v~vw~~~~~- 75 (239)
.+.++|++|.|||.++. .+....+.|. +.|..+.|.+ .-|+.+++++.|+++.||.-...
T Consensus 29 AtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~--------------~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 29 ATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD--------------GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeccCCCcEEEEeccCCCCceEEeeeEEecC--------------CcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 56788999999996433 4566778898 9999999974 34789999999999999985211
Q ss_pred ------C--ceeee-cCCCCEEEEEEec--CCcEEEEeC-CCcEEEEEccC-----------------------------
Q psy11036 76 ------D--PVMSV-NHGSPVESVLCLP--SGGIFVTGG-GLDVCIWDMLG----------------------------- 114 (239)
Q Consensus 76 ------~--~~~~~-~~~~~v~~~~~~~--~~~~l~~~~-~~~i~~~d~~~----------------------------- 114 (239)
+ ...++ .....|+.+.|.| -|-.+++++ ||.++||+...
T Consensus 95 ~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~C 174 (361)
T KOG2445|consen 95 EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFC 174 (361)
T ss_pred cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceE
Confidence 1 12233 4678899999998 466777777 89999997520
Q ss_pred ----------------------------------C---CeEEEEEeccCCceEEEEEcCCC----CEEEEEecCCeEEEE
Q psy11036 115 ----------------------------------G---GKLLHKFTCHHKTVTSLCLASGG----KRLISASLDHHAKIY 153 (239)
Q Consensus 115 ----------------------------------~---~~~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~d~~i~i~ 153 (239)
. -..+.++.+|..+|++++|.|+- ..||+++.|| |+||
T Consensus 175 vsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~ 253 (361)
T KOG2445|consen 175 VSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIF 253 (361)
T ss_pred EeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEE
Confidence 0 01223345688899999999953 4789999999 9999
Q ss_pred Eccc--ceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc---CCeeeEEecC
Q psy11036 154 EMTL--KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV---NFSPVHTLDY 228 (239)
Q Consensus 154 d~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~---~~~~~~~~~~ 228 (239)
.++. ..+..-.-.......+ -.-+.+..+..|.+.|..+.|+-.|..|++.+.||.||+|... ..+++..++.
T Consensus 254 ~v~~~~s~i~~ee~~~~~~~~~--l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 254 KVKVARSAIEEEEVLAPDLMTD--LPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKA 331 (361)
T ss_pred EEeeccchhhhhcccCCCCccc--cceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEec
Confidence 9882 1111100000000111 1235566788999999999999999999999999999999763 3456666665
Q ss_pred CCCeeeeEec
Q psy11036 229 PSPVLSIDVS 238 (239)
Q Consensus 229 ~~~v~~~~~s 238 (239)
++.+....|+
T Consensus 332 e~~~~~~~~~ 341 (361)
T KOG2445|consen 332 EGSVTKPDFS 341 (361)
T ss_pred cCCCCCcccc
Confidence 5555554443
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=140.48 Aligned_cols=181 Identities=17% Similarity=0.252 Sum_probs=137.7
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCC-----
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGG----- 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~----- 115 (239)
-.+..+-... ++.+|++++.|..|.+|+++ |+.+..+. ....-+..+.+|+|+++++++ .-.|++|.+--+
T Consensus 188 v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~f 265 (420)
T KOG2096|consen 188 VDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTF 265 (420)
T ss_pred cceEEEeecC-CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcch
Confidence 3444444444 67899999999999999998 77777773 455567788999999999999 688999987421
Q ss_pred --CeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEE----EecccC
Q psy11036 116 --GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHK----FTCHHK 189 (239)
Q Consensus 116 --~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~----~~~h~~ 189 (239)
-..+..+++|+..|..++|+++.+.+++.+.||+++|||++- -|....+...+.. +....+
T Consensus 266 qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV-------------rY~~~qDpk~Lk~g~~pl~aag~ 332 (420)
T KOG2096|consen 266 QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV-------------RYEAGQDPKILKEGSAPLHAAGS 332 (420)
T ss_pred hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc-------------eEecCCCchHhhcCCcchhhcCC
Confidence 124567889999999999999999999999999999999870 0111111111111 122233
Q ss_pred cEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec--CCCCeeeeEecC
Q psy11036 190 TVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 190 ~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp 239 (239)
.-..++++|+|+.||.+. ...+++|..++|+.+..++ |...|.+++|+|
T Consensus 333 ~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 333 EPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSS 383 (420)
T ss_pred CceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecC
Confidence 344899999999988664 4579999999999998887 899999999986
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=141.02 Aligned_cols=185 Identities=19% Similarity=0.299 Sum_probs=154.7
Q ss_pred eccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEE
Q psy11036 31 YKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVC 108 (239)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~ 108 (239)
+.+|+..+..+.+.|.+..|.. +++.+++++.|.+..+||+++++++..+ +|....+.++-+|..+++++++ |.+.+
T Consensus 261 iRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 261 IRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFR 339 (481)
T ss_pred eeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeE
Confidence 3445555555559999999999 9999999999999999999999999988 8999999999999999999888 89999
Q ss_pred EEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEeccc
Q psy11036 109 IWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH 188 (239)
Q Consensus 109 ~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~ 188 (239)
+||.+..-+.+..|++|...|++..|..+ ..+++|+.|.+|++||++ +-..++..+.. .
T Consensus 340 LWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLr-------------------NMRsplATIRt-d 398 (481)
T KOG0300|consen 340 LWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLR-------------------NMRSPLATIRT-D 398 (481)
T ss_pred eccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeec-------------------cccCcceeeec-C
Confidence 99999777888999999999999999865 568999999999999998 11334444443 5
Q ss_pred CcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec------CCCCeeeeEec
Q psy11036 189 KTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD------YPSPVLSIDVS 238 (239)
Q Consensus 189 ~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~s 238 (239)
.++..++.+..+..++.--++..|++||+ +|..+..++ |..-|.+++|.
T Consensus 399 S~~NRvavs~g~~iIAiPhDNRqvRlfDl-nG~RlaRlPrtsRqgHrRMV~c~AW~ 453 (481)
T KOG0300|consen 399 SPANRVAVSKGHPIIAIPHDNRQVRLFDL-NGNRLARLPRTSRQGHRRMVTCCAWL 453 (481)
T ss_pred CccceeEeecCCceEEeccCCceEEEEec-CCCccccCCcccccccceeeeeeecc
Confidence 77888999988889998888999999999 455555443 56678888885
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-22 Score=153.20 Aligned_cols=219 Identities=20% Similarity=0.251 Sum_probs=157.8
Q ss_pred CCCEEEEeeCCCcce------eeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee
Q psy11036 6 PILIVALWDIPSEAQ------VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM 79 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 79 (239)
.+|.|.++|...... +..+..|. ..|..+.|-| +..+|++++.|.++++||+++.+.+.
T Consensus 72 E~G~i~l~dt~~~~fr~ee~~lk~~~aH~--------------nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G 136 (720)
T KOG0321|consen 72 EDGGIILFDTKSIVFRLEERQLKKPLAHK--------------NAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVG 136 (720)
T ss_pred CCCceeeecchhhhcchhhhhhccccccc--------------ceeEeeccCC-CceeEEEccCCceeeeeeeccceeec
Confidence 568888888754322 23445566 9999999999 89999999999999999999888766
Q ss_pred e---ecCCCCEEEEEEecCCc-EEEEeC-CCcEEEEEccCCC--------------------------eEEEEEeccCCc
Q psy11036 80 S---VNHGSPVESVLCLPSGG-IFVTGG-GLDVCIWDMLGGG--------------------------KLLHKFTCHHKT 128 (239)
Q Consensus 80 ~---~~~~~~v~~~~~~~~~~-~l~~~~-~~~i~~~d~~~~~--------------------------~~~~~~~~~~~~ 128 (239)
. ++|.+.|.+++|.|... .|++|+ ||.|.|||++..+ +.+...+++...
T Consensus 137 ~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~t 216 (720)
T KOG0321|consen 137 GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNT 216 (720)
T ss_pred ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCc
Confidence 5 38999999999999665 555666 8999999997432 011122344445
Q ss_pred eEE---EEEcCCCCEEEEEec-CCeEEEEEcc-cceEeee---------------------------------ecceeEE
Q psy11036 129 VTS---LCLASGGKRLISASL-DHHAKIYEMT-LKTVSSF---------------------------------TGGLDVC 170 (239)
Q Consensus 129 i~~---i~~~~~~~~l~~~~~-d~~i~i~d~~-~~~~~~~---------------------------------~~~~~i~ 170 (239)
|.+ +.+..|...||+++. |+.|++||++ ....... +.++.|+
T Consensus 217 i~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy 296 (720)
T KOG0321|consen 217 IFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIY 296 (720)
T ss_pred eeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEE
Confidence 555 555568888998888 9999999997 2221111 3366699
Q ss_pred EEEccCCC-EEEEEEecccCc--EEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEE-ec-CCCCeeeeEecC
Q psy11036 171 IWDMLGGG-KLLHKFTCHHKT--VTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHT-LD-YPSPVLSIDVSM 239 (239)
Q Consensus 171 ~~d~~~~~-~~~~~~~~h~~~--v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~-~~~~v~~~~~sp 239 (239)
.||+.+.. .++..+.++... -..-..+|++.++++|+.|...++|.+.+.+.--. +. |.-.|++++|.|
T Consensus 297 ~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 297 FYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred EEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 99987643 344444444321 11234689999999999999999999987654332 33 777899999876
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-22 Score=152.36 Aligned_cols=175 Identities=22% Similarity=0.280 Sum_probs=154.3
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
-+||.|.|||+.+...++.|++|. +.+.||..++ ++..|.+|+.|.+||.||++++.........
T Consensus 528 csdGnI~vwDLhnq~~VrqfqGht--------------DGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~ 592 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQTLVRQFQGHT--------------DGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFS 592 (705)
T ss_pred ccCCcEEEEEcccceeeecccCCC--------------CCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhh
Confidence 468999999999999999999999 9999999999 8999999999999999999999888888888
Q ss_pred CCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeee
Q psy11036 85 SPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSF 163 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 163 (239)
..|.++.++|++.++++|. ++.+.+.... +.....+.-|..-|.++.|.+-|+++++.+.|+.+..|.+.
T Consensus 593 SQIfSLg~cP~~dWlavGMens~vevlh~s--kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtP------- 663 (705)
T KOG0639|consen 593 SQIFSLGYCPTGDWLAVGMENSNVEVLHTS--KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP------- 663 (705)
T ss_pred hhheecccCCCccceeeecccCcEEEEecC--CccceeecccccEEEEEEecccCceeeecCchhhhhhccCc-------
Confidence 9999999999999999999 5888887774 55556677799999999999999999999999999999877
Q ss_pred ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 164 TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 164 ~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
-+..+...+. .+.|.++..|.|+++++|||.|+...+|.+
T Consensus 664 -------------yGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 664 -------------YGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -------------cccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 1222332232 577999999999999999999999999875
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-22 Score=147.99 Aligned_cols=194 Identities=22% Similarity=0.285 Sum_probs=153.7
Q ss_pred CCCEEEEeeCCCcc----eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 6 PILIVALWDIPSEA----QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 6 ~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
.-|+|-+||+.+.+ .+..+..|. .+|.++.|+|.+...+++.++||++++-|+++......+
T Consensus 208 K~G~VG~Wn~~~~~~d~d~v~~f~~hs--------------~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~ 273 (498)
T KOG4328|consen 208 KGGQVGLWNFGTQEKDKDGVYLFTPHS--------------GPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVL 273 (498)
T ss_pred CCCcEEEEecCCCCCccCceEEeccCC--------------ccccceEecCCChhheeeeccCceeeeeeecchhhHHHh
Confidence 45999999995332 344566677 999999999988889999999999999999876543333
Q ss_pred c---CCCCEEEEEEecCCcEEEEeCC-CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEEcc
Q psy11036 82 N---HGSPVESVLCLPSGGIFVTGGG-LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMT 156 (239)
Q Consensus 82 ~---~~~~v~~~~~~~~~~~l~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~ 156 (239)
. .......+.|+.+...++.+.+ |.+.+||++..+.....+.-|...|+.++++|.. .+|++++.|++.+|||++
T Consensus 274 s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 274 SLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred hcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehh
Confidence 2 3445677888887777777775 8999999997777788888899999999999965 579999999999999998
Q ss_pred cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEc----cCCeeeEEecCC
Q psy11036 157 LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM----VNFSPVHTLDYP 229 (239)
Q Consensus 157 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~----~~~~~~~~~~~~ 229 (239)
. +.....+....-.|...|.++.|||.+..|+|.+.|..|+|||. ..-+++.++.|+
T Consensus 354 ~----------------l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn 414 (498)
T KOG4328|consen 354 Q----------------LRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN 414 (498)
T ss_pred h----------------hcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc
Confidence 0 01112233444579999999999998877999999999999998 455667777654
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=136.94 Aligned_cols=175 Identities=16% Similarity=0.178 Sum_probs=141.4
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc-eeee------cCCCCEEEEEEec--CCcEEEEeCCCcEEEEEcc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP-VMSV------NHGSPVESVLCLP--SGGIFVTGGGLDVCIWDML 113 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~-~~~~------~~~~~v~~~~~~~--~~~~l~~~~~~~i~~~d~~ 113 (239)
+.|.|+.|.| ++..+++-. |..|.+|++..... +..+ .+....++-+|+| ++..+++.+++++..||++
T Consensus 124 g~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~R 201 (370)
T KOG1007|consen 124 GKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLR 201 (370)
T ss_pred CceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEcc
Confidence 7899999999 787877654 78899999987765 3333 2455678889998 7899999999999999999
Q ss_pred CCCeEEEEEeccCCceEEEEEcCCCC-EEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEE
Q psy11036 114 GGGKLLHKFTCHHKTVTSLCLASGGK-RLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVT 192 (239)
Q Consensus 114 ~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~ 192 (239)
...+....-.+|...|..+.|+|+.+ +|++|+.||.|+|||.+ ....++.++.+|...|.
T Consensus 202 T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R-------------------~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 202 TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR-------------------KTKFPVQELPGHSHWVW 262 (370)
T ss_pred chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc-------------------CCCccccccCCCceEEE
Confidence 54555555568999999999999875 68899999999999987 44778888999999999
Q ss_pred EEEEcc-CCCeEEEEcCCceEEEEEccCC------------------------e-----eeEEec-CCCCeeeeEec
Q psy11036 193 SLCLAS-GGKRLISASLDHHAKIYEMVNF------------------------S-----PVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 193 ~~~~s~-~~~~l~s~s~d~~i~iwd~~~~------------------------~-----~~~~~~-~~~~v~~~~~s 238 (239)
++.|+| ..+++++|+.|..|.+|-...- + .+.++. |+..|.+++||
T Consensus 263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS 339 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS 339 (370)
T ss_pred EEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence 999999 4678899999999999954310 1 233454 88899999997
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-22 Score=139.53 Aligned_cols=178 Identities=24% Similarity=0.280 Sum_probs=143.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc---eeee-cCCCCEEEEEEec--CCcEEEEeC-CCcEEEEEccCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP---VMSV-NHGSPVESVLCLP--SGGIFVTGG-GLDVCIWDMLGG 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~---~~~~-~~~~~v~~~~~~~--~~~~l~~~~-~~~i~~~d~~~~ 115 (239)
+.|..+...- -+.+|++++.|++|+|+.+++... +.++ +|.+||..++|.. .|.+|++++ ||.|.||.-. +
T Consensus 12 D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~-~ 89 (299)
T KOG1332|consen 12 DMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE-N 89 (299)
T ss_pred hhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC-C
Confidence 7788887777 789999999999999999986653 4455 7999999999976 799999999 9999999987 4
Q ss_pred Ce--EEEEEeccCCceEEEEEcCCC--CEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcE
Q psy11036 116 GK--LLHKFTCHHKTVTSLCLASGG--KRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTV 191 (239)
Q Consensus 116 ~~--~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v 191 (239)
++ .......|...|++++|.|.+ -.|++++.||.|.|.+.+.. ...........|.-.|
T Consensus 90 g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-----------------g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 90 GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-----------------GGWTTSKIVFAHEIGV 152 (299)
T ss_pred CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-----------------CCccchhhhhcccccc
Confidence 32 445567899999999999854 68999999999999988711 0112223446799999
Q ss_pred EEEEEccC---C-----------CeEEEEcCCceEEEEEccCCe--eeEEec-CCCCeeeeEecC
Q psy11036 192 TSLCLASG---G-----------KRLISASLDHHAKIYEMVNFS--PVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 192 ~~~~~s~~---~-----------~~l~s~s~d~~i~iwd~~~~~--~~~~~~-~~~~v~~~~~sp 239 (239)
++++|.|. | +.|++|+.|..|+||+..+++ .-++++ |.+-|+.++|+|
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcc
Confidence 99999985 4 569999999999999998753 334465 888999999988
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-21 Score=137.73 Aligned_cols=94 Identities=23% Similarity=0.314 Sum_probs=79.4
Q ss_pred CCCCEEEEeeCCC-ccee-eeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec
Q psy11036 5 LPILIVALWDIPS-EAQV-STFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 82 (239)
+=||+||+|+++. |..+ +....|. ++|.+++|+. ++..+++|+.|+.+++||+.+++....-.
T Consensus 47 SWD~tVR~wevq~~g~~~~ka~~~~~--------------~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~Q~~~v~~ 111 (347)
T KOG0647|consen 47 SWDGTVRIWEVQNSGQLVPKAQQSHD--------------GPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASGQVSQVAA 111 (347)
T ss_pred ccCCceEEEEEecCCcccchhhhccC--------------CCeEEEEEcc-CCceEEeeccCCceEEEEccCCCeeeeee
Confidence 4479999999976 3433 2344566 9999999999 78999999999999999999997666557
Q ss_pred CCCCEEEEEEecCCc--EEEEeC-CCcEEEEEcc
Q psy11036 83 HGSPVESVLCLPSGG--IFVTGG-GLDVCIWDML 113 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~--~l~~~~-~~~i~~~d~~ 113 (239)
|.++|.+++|-+... .|++|+ |.+|+.||.+
T Consensus 112 Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 112 HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred cccceeEEEEecCCCcceeEecccccceeecccC
Confidence 999999999988655 888999 9999999987
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=150.92 Aligned_cols=204 Identities=19% Similarity=0.306 Sum_probs=152.9
Q ss_pred CCCCCCEEEEeeCCCcceeee--eeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC----
Q psy11036 3 HDLPILIVALWDIPSEAQVST--FTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD---- 76 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~---- 76 (239)
+.+.|.++++||+++.+.+.. +.+|. ..|.+++|.|.+...+++|+.||.+.|||++-..
T Consensus 117 sasGDsT~r~Wdvk~s~l~G~~~~~GH~--------------~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~ 182 (720)
T KOG0321|consen 117 SASGDSTIRPWDVKTSRLVGGRLNLGHT--------------GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL 182 (720)
T ss_pred EccCCceeeeeeeccceeecceeecccc--------------cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH
Confidence 345688999999999888776 89999 9999999999999999999999999999986322
Q ss_pred ----------------ceeee--------cCCCCEEE---EEEecCCcEEEEeC--CCcEEEEEccCCCeEE-------E
Q psy11036 77 ----------------PVMSV--------NHGSPVES---VLCLPSGGIFVTGG--GLDVCIWDMLGGGKLL-------H 120 (239)
Q Consensus 77 ----------------~~~~~--------~~~~~v~~---~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~-------~ 120 (239)
+...+ .+...+.. +.+..|...|++++ |+.|++||++...... .
T Consensus 183 e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~ 262 (720)
T KOG0321|consen 183 EEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSD 262 (720)
T ss_pred HHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCccc
Confidence 10000 12333444 55566788888877 8999999998432211 1
Q ss_pred EEecc---CCceEEEEEcCCCCEEEEEecCCeEEEEEccc---ceEeee------------------------ecceeEE
Q psy11036 121 KFTCH---HKTVTSLCLASGGKRLISASLDHHAKIYEMTL---KTVSSF------------------------TGGLDVC 170 (239)
Q Consensus 121 ~~~~~---~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~------------------------~~~~~i~ 170 (239)
.+..| .-.++++.....|.+|.+.+.|+.|++|++.. ..+..+ +.+...+
T Consensus 263 ~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ay 342 (720)
T KOG0321|consen 263 KYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAY 342 (720)
T ss_pred CccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCccee
Confidence 22223 33677888888888888888899999999972 111111 2344588
Q ss_pred EEEccCCCEEEEEEecccCcEEEEEEccC-CCeEEEEcCCceEEEEEccCC
Q psy11036 171 IWDMLGGGKLLHKFTCHHKTVTSLCLASG-GKRLISASLDHHAKIYEMVNF 220 (239)
Q Consensus 171 ~~d~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~ 220 (239)
+|.+.........+.+|...|++++|.|. -.-++++++|..++||++..+
T Consensus 343 iw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 343 IWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99998888888889999999999999984 344777799999999999653
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-19 Score=137.65 Aligned_cols=218 Identities=18% Similarity=0.300 Sum_probs=163.5
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
.++++..+.+||...+......+..+ +.|...+|+|.+.+++++.+. +.+.+|+.+.+...++.
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~vk~sn--------------e~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~ 239 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGPVKTSN--------------EVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQG 239 (626)
T ss_pred cCCCccccchhhchhhhccCcceecc--------------ceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEee
Confidence 34667788889988877777777766 889999999988888888876 78999999988665543
Q ss_pred --c--CCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEccc
Q psy11036 82 --N--HGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTL 157 (239)
Q Consensus 82 --~--~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 157 (239)
+ .+.-|.|++|.++|..+..-++|.|.||+.. ..+..+....|.+.|.+++...+|.+|- |+.|..|..||-..
T Consensus 240 ~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~-~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKG-TNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY 317 (626)
T ss_pred ccccccceEEEEEEEcCCCCEEeecCCceEEEEeCC-CceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccc
Confidence 1 3467999999999987765568999999997 6666666669999999999999987655 99999999998432
Q ss_pred ceEeee---------------------------------------------------------------ecceeEEEEE-
Q psy11036 158 KTVSSF---------------------------------------------------------------TGGLDVCIWD- 173 (239)
Q Consensus 158 ~~~~~~---------------------------------------------------------------~~~~~i~~~d- 173 (239)
+.+... .-+..+++|+
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~ 397 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND 397 (626)
T ss_pred cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC
Confidence 211111 0122255554
Q ss_pred -------------------------------------ccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEE
Q psy11036 174 -------------------------------------MLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 174 -------------------------------------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
.++ ...+ .++....++++++|+|+|.+||.|+.|+.|+||.
T Consensus 398 ~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~-~~lv-~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 398 HKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTET-QDLV-TIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred CceeEEEEecCceeEeeccCcceEEEeeccceEEEEeccc-ceeE-EEEecCCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 222 1112 2222367899999999999999999999999999
Q ss_pred ccC-CeeeEEec--CCCCeeeeEecC
Q psy11036 217 MVN-FSPVHTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 217 ~~~-~~~~~~~~--~~~~v~~~~~sp 239 (239)
+.. +..+.... +.++|+.++||+
T Consensus 476 Vs~~g~~y~r~~k~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 476 VSANGRKYSRVGKCSGSPITHLDWSS 501 (626)
T ss_pred ECCCCcEEEEeeeecCceeEEeeecC
Confidence 964 44444444 458999999986
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-20 Score=140.22 Aligned_cols=198 Identities=14% Similarity=0.219 Sum_probs=157.6
Q ss_pred CCCCCEEEEeeCCC--cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 4 DLPILIVALWDIPS--EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 4 ~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
.|-||+++||.++. ...++.+.... -+|.+.+|.|++...+++++....++.||+.+.+....-
T Consensus 231 aG~d~~lrifqvDGk~N~~lqS~~l~~--------------fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~ 296 (514)
T KOG2055|consen 231 AGLDGTLRIFQVDGKVNPKLQSIHLEK--------------FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK 296 (514)
T ss_pred ecCCCcEEEEEecCccChhheeeeecc--------------CccceeeecCCCceEEEecccceEEEEeecccccccccc
Confidence 47789999998853 34556666565 889999999944449999999999999999887654322
Q ss_pred ---cC-CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 82 ---NH-GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 82 ---~~-~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
++ +..+.....+|++++++..+ .|.|.+.... +++.+.+++ ..+.|..++|+.+++.|++++.+|.|.+||++
T Consensus 297 ~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak-T~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~ 374 (514)
T KOG2055|consen 297 PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK-TKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLR 374 (514)
T ss_pred CCCCcccchhheeEecCCCCeEEEcccCceEEeehhh-hhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecC
Confidence 22 34567788899999999998 7999999887 888888887 57889999999999999999999999999999
Q ss_pred -cceEeeeecceeEEEEEccCCCEEEEEEecccCc--EEEEEEccCCCeEEEEcCCceEEEEEcc------CCeeeEEec
Q psy11036 157 -LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKT--VTSLCLASGGKRLISASLDHHAKIYEMV------NFSPVHTLD 227 (239)
Q Consensus 157 -~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~--v~~~~~s~~~~~l~s~s~d~~i~iwd~~------~~~~~~~~~ 227 (239)
..+++.+ .. .+. -++++.|+++.+||+||..|.|.|||.. +.+|+..+.
T Consensus 375 ~~~~~~rf---------------------~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 375 QNSCLHRF---------------------VD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred CcceEEEE---------------------ee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 3333333 32 222 3567788999999999999999999964 356777776
Q ss_pred -CCCCeeeeEecC
Q psy11036 228 -YPSPVLSIDVSM 239 (239)
Q Consensus 228 -~~~~v~~~~~sp 239 (239)
....|++|.|+|
T Consensus 433 NLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 433 NLTTAITSLQFNH 445 (514)
T ss_pred hhheeeeeeeeCc
Confidence 778999999986
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-20 Score=133.22 Aligned_cols=175 Identities=14% Similarity=0.191 Sum_probs=139.2
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGS 85 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 85 (239)
.+|.|.|||+.+...-+.+.+|. .+|++++|++ +++.|++++.|..+.+||+..|.+...+...+
T Consensus 43 ~nG~vvI~D~~T~~iar~lsaH~--------------~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rirf~s 107 (405)
T KOG1273|consen 43 ANGRVVIYDFDTFRIARMLSAHV--------------RPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDS 107 (405)
T ss_pred cCCcEEEEEccccchhhhhhccc--------------cceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEEccC
Confidence 57999999999999889999999 9999999999 89999999999999999999999999999999
Q ss_pred CEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEecc------CCceEEEEEcCCCCEEEEEecCCeEEEEEccc
Q psy11036 86 PVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCH------HKTVTSLCLASGGKRLISASLDHHAKIYEMTL 157 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 157 (239)
+|..+.|+|.....+++. +..-.+-++. . +.++.-.. +..-.+..|.+.|+++++|...|.+.++|..
T Consensus 108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s-~--~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~- 183 (405)
T KOG1273|consen 108 PVWGAQWHPRKRNKCVATIMEESPVVIDFS-D--PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE- 183 (405)
T ss_pred ccceeeeccccCCeEEEEEecCCcEEEEec-C--CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc-
Confidence 999999999554433333 4444444443 1 12222111 1122333688999999999999999999988
Q ss_pred ceEeeeecceeEEEEEccCCCEEEEEEeccc-CcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 158 KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH-KTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 158 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
+.+++..++-.. ..|..+.++..|++|+.-+.|..||.|+++
T Consensus 184 -------------------t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 184 -------------------TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred -------------------hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 344555545444 789999999999999999999999999986
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=137.69 Aligned_cols=205 Identities=18% Similarity=0.271 Sum_probs=159.8
Q ss_pred CCCCCCCEEEEeeCCCcce---------eeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeC
Q psy11036 2 SHDLPILIVALWDIPSEAQ---------VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDT 72 (239)
Q Consensus 2 s~~~~dg~i~vwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~ 72 (239)
.+.|.|..|++|-+..++. ...+..|. ..|+++.|+| ++++|++|+.+|.|.+|..
T Consensus 30 aT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~--------------~aVN~vRf~p-~gelLASg~D~g~v~lWk~ 94 (434)
T KOG1009|consen 30 ATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT--------------RAVNVVRFSP-DGELLASGGDGGEVFLWKQ 94 (434)
T ss_pred ecccCccceeeeeeeecCCCCCceeEEEeecccCCc--------------ceeEEEEEcC-CcCeeeecCCCceEEEEEe
Confidence 4678899999998764322 33556677 9999999999 8999999999999999986
Q ss_pred C--------C-----CC-ce--eee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEE
Q psy11036 73 R--------S-----PD-PV--MSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL 134 (239)
Q Consensus 73 ~--------~-----~~-~~--~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~ 134 (239)
. + .+ .+ ..+ .|...+..++|+|++.++++++ |+.+.+||+. .++....+..|...+..++|
T Consensus 95 ~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-~G~l~~~~~dh~~yvqgvaw 173 (434)
T KOG1009|consen 95 GDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-AGQLLAILDDHEHYVQGVAW 173 (434)
T ss_pred cCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-cceeEeeccccccccceeec
Confidence 6 2 11 11 122 4889999999999999999999 8999999999 89999999999999999999
Q ss_pred cCCCCEEEEEecCCeEEEEEcc-cceEeee--------------------------------------------------
Q psy11036 135 ASGGKRLISASLDHHAKIYEMT-LKTVSSF-------------------------------------------------- 163 (239)
Q Consensus 135 ~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~-------------------------------------------------- 163 (239)
.|-++++++-+.|...+.+.+. .+.+...
T Consensus 174 Dpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~ 253 (434)
T KOG1009|consen 174 DPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFK 253 (434)
T ss_pred chhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceee
Confidence 9999999998888877766654 1111110
Q ss_pred ----------------------------------------------------------------ecceeEEEEEccCCCE
Q psy11036 164 ----------------------------------------------------------------TGGLDVCIWDMLGGGK 179 (239)
Q Consensus 164 ----------------------------------------------------------------~~~~~i~~~d~~~~~~ 179 (239)
.....+++||.++...
T Consensus 254 ~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P 333 (434)
T KOG1009|consen 254 VGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEP 333 (434)
T ss_pred eCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccc
Confidence 1123377788666434
Q ss_pred EEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCee
Q psy11036 180 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 180 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
....-.-|-.+|+.++|++||..|+..|.||...+-.++.+++
T Consensus 334 ~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 334 LAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 4444456889999999999999999999999888776665544
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-19 Score=127.47 Aligned_cols=194 Identities=21% Similarity=0.232 Sum_probs=145.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce----eee-cCCCCEEEEEEec--CCcEEEEeC-CCcEEEEEccC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV----MSV-NHGSPVESVLCLP--SGGIFVTGG-GLDVCIWDMLG 114 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~----~~~-~~~~~v~~~~~~~--~~~~l~~~~-~~~i~~~d~~~ 114 (239)
+-|.++.|.+ .|+.+++++.|++|+|||.+..... ... .|.+.|..+.|.+ -|+.+++++ |+++.||.-..
T Consensus 14 DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~ 92 (361)
T KOG2445|consen 14 DLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQE 92 (361)
T ss_pred ceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecc
Confidence 8899999999 8999999999999999997554322 222 4899999999976 588999998 99999997631
Q ss_pred --------CCeEEEEEeccCCceEEEEEcC--CCCEEEEEecCCeEEEEEcc-cceEee------e--------------
Q psy11036 115 --------GGKLLHKFTCHHKTVTSLCLAS--GGKRLISASLDHHAKIYEMT-LKTVSS------F-------------- 163 (239)
Q Consensus 115 --------~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~------~-------------- 163 (239)
.-....++......|+.++|.| -|-.|++++.||.++||+.. -..+.. +
T Consensus 93 ~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~ 172 (361)
T KOG2445|consen 93 KSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPC 172 (361)
T ss_pred cccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcc
Confidence 1124456667788999999999 46789999999999999874 111110 0
Q ss_pred ----------------ec-------ceeEEEEEccCCC---EEEEEEecccCcEEEEEEccC----CCeEEEEcCCceEE
Q psy11036 164 ----------------TG-------GLDVCIWDMLGGG---KLLHKFTCHHKTVTSLCLASG----GKRLISASLDHHAK 213 (239)
Q Consensus 164 ----------------~~-------~~~i~~~d~~~~~---~~~~~~~~h~~~v~~~~~s~~----~~~l~s~s~d~~i~ 213 (239)
.| -..+.+|...... ..+.++.+|..+|++++|.|+ -..||+++.|| |+
T Consensus 173 ~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~ 251 (361)
T KOG2445|consen 173 FCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VR 251 (361)
T ss_pred eEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EE
Confidence 01 1236677655444 345567789999999999996 35789999999 99
Q ss_pred EEEccCC--------------------eeeEEec-CCCCeeeeEec
Q psy11036 214 IYEMVNF--------------------SPVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 214 iwd~~~~--------------------~~~~~~~-~~~~v~~~~~s 238 (239)
||.++.. +.+..+. |.+.|..+.|+
T Consensus 252 I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 252 IFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN 297 (361)
T ss_pred EEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe
Confidence 9998731 1233343 77899999886
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-20 Score=131.12 Aligned_cols=180 Identities=22% Similarity=0.363 Sum_probs=137.8
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSP 86 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~ 86 (239)
||.+++||+...+....++ |. .++.+++|.+ ...+++|+-||.|+.+|+.+++....-.|..+
T Consensus 34 DgslrlYdv~~~~l~~~~~-~~--------------~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~ 96 (323)
T KOG1036|consen 34 DGSLRLYDVPANSLKLKFK-HG--------------APLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEG 96 (323)
T ss_pred cCcEEEEeccchhhhhhee-cC--------------CceeeeeccC--CceEEEeccCceEEEEEecCCcceeeccCCCc
Confidence 6999999998876655555 44 8999999986 57889999999999999999887766689999
Q ss_pred EEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cc-eE---
Q psy11036 87 VESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LK-TV--- 160 (239)
Q Consensus 87 v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~--- 160 (239)
+.|+.+++....+++|+ |++|++||.+ .......+. ....|.++.. .|+.|++|+.|..+.+||++ .. ..
T Consensus 97 i~ci~~~~~~~~vIsgsWD~~ik~wD~R-~~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~r 172 (323)
T KOG1036|consen 97 IRCIEYSYEVGCVISGSWDKTIKFWDPR-NKVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRR 172 (323)
T ss_pred eEEEEeeccCCeEEEcccCccEEEEecc-ccccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhc
Confidence 99999999888889999 9999999998 433333333 2335666655 46678888888888888886 11 11
Q ss_pred -----------eee--------------------------------------------------------------ecc-
Q psy11036 161 -----------SSF--------------------------------------------------------------TGG- 166 (239)
Q Consensus 161 -----------~~~--------------------------------------------------------------~~~- 166 (239)
..+ +|+
T Consensus 173 eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs 252 (323)
T KOG1036|consen 173 ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS 252 (323)
T ss_pred cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCC
Confidence 000 333
Q ss_pred -eeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC
Q psy11036 167 -LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL 208 (239)
Q Consensus 167 -~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 208 (239)
+-|.+||+.+ .+.+..+......|.+++|+.+|..||.++.
T Consensus 253 DG~V~~Wd~~~-rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 253 DGIVNIWDLFN-RKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CceEEEccCcc-hhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 3388999887 5556666666778999999999999998864
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-20 Score=132.33 Aligned_cols=135 Identities=22% Similarity=0.289 Sum_probs=120.8
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCC--EEEEEecCCeEEEEEcccc
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK--RLISASLDHHAKIYEMTLK 158 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~d~~i~i~d~~~~ 158 (239)
.|.+++++++.+ +.++++|+ |.+|++||++ ....+..+..|.+.|+++.|.+.-. +|++|+.||.|.+|+..
T Consensus 41 aH~~sitavAVs--~~~~aSGssDetI~IYDm~-k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-- 115 (362)
T KOG0294|consen 41 AHAGSITALAVS--GPYVASGSSDETIHIYDMR-KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-- 115 (362)
T ss_pred ccccceeEEEec--ceeEeccCCCCcEEEEecc-chhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC--
Confidence 489999999986 89999999 8999999999 6777778888999999999998664 89999999999999987
Q ss_pred eEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCCeeeeEec
Q psy11036 159 TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVS 238 (239)
Q Consensus 159 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s 238 (239)
..+++..+++|.+.|+.++.+|.+++-++.+.|+.+++|++-+|+.-...+.....+.+.|+
T Consensus 116 ------------------~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~ 177 (362)
T KOG0294|consen 116 ------------------SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWS 177 (362)
T ss_pred ------------------CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEc
Confidence 56788888999999999999999999999999999999999999888877766666668887
Q ss_pred C
Q psy11036 239 M 239 (239)
Q Consensus 239 p 239 (239)
|
T Consensus 178 ~ 178 (362)
T KOG0294|consen 178 P 178 (362)
T ss_pred C
Confidence 6
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=135.79 Aligned_cols=191 Identities=21% Similarity=0.251 Sum_probs=149.9
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCceeee---
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV-SSDIVISGSYDKTVNVYDTRSPDPVMSV--- 81 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~--- 81 (239)
+.|.|++||..+++.+..++++. ..+..++|... ..+.+.+++.||+|++||++.......+
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~--------------~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPP--------------ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred cCCeEEEEeccchhhhheecCCC--------------CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 56999999999999999999998 88889999864 5678999999999999999988766655
Q ss_pred cCC-CCEEEEEEecCCcEEEEeC-----CCcEEEEEccCCCeEEEE-EeccCCceEEEEEcCC-CCEEEEEecCCeEEEE
Q psy11036 82 NHG-SPVESVLCLPSGGIFVTGG-----GLDVCIWDMLGGGKLLHK-FTCHHKTVTSLCLASG-GKRLISASLDHHAKIY 153 (239)
Q Consensus 82 ~~~-~~v~~~~~~~~~~~l~~~~-----~~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~ 153 (239)
.++ .+..+++...+++.+++|. +-.|.+||.|...+++.. ...|...|++++|+|. -+.|++|+.||.|.+|
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF 193 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence 233 4677787777788888886 356899999966664544 4579999999999995 4799999999999999
Q ss_pred EcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC-CeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 154 EMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 154 d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
|++.. .....+...-.|...|..+.|..++ +.+.+-+......+|+++.+.+...++
T Consensus 194 D~~~d-----------------~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 194 DTKKD-----------------NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred ecCCC-----------------cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 99811 0111122223467789999999876 457788889999999999887655444
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=141.47 Aligned_cols=192 Identities=17% Similarity=0.211 Sum_probs=143.8
Q ss_pred eCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCC-CEEEEeeCCCeEEEEeCCCCCc----eeee-cCCCCE
Q psy11036 14 DIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSS-DIVISGSYDKTVNVYDTRSPDP----VMSV-NHGSPV 87 (239)
Q Consensus 14 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~v~vw~~~~~~~----~~~~-~~~~~v 87 (239)
|+.+-.....++.+. +.|++++|+|... .++++|..-|+|-+||+.+.++ +..+ .|..+|
T Consensus 172 ~l~~~~~~~v~kv~~--------------~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~V 237 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTD--------------RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPV 237 (498)
T ss_pred ccccceecceeEecc--------------cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccc
Confidence 344444455556666 8999999999655 6888999999999999964332 2223 699999
Q ss_pred EEEEEecC-CcEEEEeC-CCcEEEEEccCCCe--EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeee
Q psy11036 88 ESVLCLPS-GGIFVTGG-GLDVCIWDMLGGGK--LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSF 163 (239)
Q Consensus 88 ~~~~~~~~-~~~l~~~~-~~~i~~~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 163 (239)
.++.|+|. ...+++.+ ||+|++-|++ ... .+.........+..+.|+.+...++.+..=|.+.+||++
T Consensus 238 s~l~F~P~n~s~i~ssSyDGtiR~~D~~-~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R------- 309 (498)
T KOG4328|consen 238 SGLKFSPANTSQIYSSSYDGTIRLQDFE-GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLR------- 309 (498)
T ss_pred cceEecCCChhheeeeccCceeeeeeec-chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEee-------
Confidence 99999994 34555555 9999999997 322 222333344567788888888888888777787888877
Q ss_pred ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC-CCeEEEEcCCceEEEEEccCCe-----eeEEecCCCCeeeeEe
Q psy11036 164 TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG-GKRLISASLDHHAKIYEMVNFS-----PVHTLDYPSPVLSIDV 237 (239)
Q Consensus 164 ~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~~~~v~~~~~ 237 (239)
+.+.....+.-|...|.+++++|- ..+|||+|.|++++|||++... .+.++.|..+|+++.|
T Consensus 310 ------------~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF 377 (498)
T KOG4328|consen 310 ------------TDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF 377 (498)
T ss_pred ------------cCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEE
Confidence 334445555778889999999994 5678999999999999997532 2667779999999999
Q ss_pred cC
Q psy11036 238 SM 239 (239)
Q Consensus 238 sp 239 (239)
||
T Consensus 378 SP 379 (498)
T KOG4328|consen 378 SP 379 (498)
T ss_pred cC
Confidence 98
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=147.15 Aligned_cols=196 Identities=20% Similarity=0.306 Sum_probs=158.6
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecC--CCCEEEEeeCCCeEEEEeCCCC-Cceeee-c
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV--SSDIVISGSYDKTVNVYDTRSP-DPVMSV-N 82 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~v~vw~~~~~-~~~~~~-~ 82 (239)
-|.++||++.+.+.+..+.+|. ..|.|+.|+.. ...+|++++.|..|.|||+... .++.++ +
T Consensus 480 ~GnlrVy~Lq~l~~~~~~eAHe--------------sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~ 545 (1080)
T KOG1408|consen 480 GGNLRVYDLQELEYTCFMEAHE--------------SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG 545 (1080)
T ss_pred cCceEEEEehhhhhhhheeccc--------------ceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc
Confidence 4999999999999999999999 99999999852 3468999999999999999644 455666 7
Q ss_pred CCCCEEEEEEecCC--cEEEEeC-CCcEEEEEccCCCeEEEEEec-----cCCceEEEEEcCCCCEEEEEecCCeEEEEE
Q psy11036 83 HGSPVESVLCLPSG--GIFVTGG-GLDVCIWDMLGGGKLLHKFTC-----HHKTVTSLCLASGGKRLISASLDHHAKIYE 154 (239)
Q Consensus 83 ~~~~v~~~~~~~~~--~~l~~~~-~~~i~~~d~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d 154 (239)
|...|+++.|..+| ..+++++ |..|. ++..........+.. ....+..++..|..+++++++.|..|+||+
T Consensus 546 HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 546 HSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred cccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe
Confidence 99999999999877 5666666 65544 443311111111221 235789999999999999999999999999
Q ss_pred cc-cceEeeeec-------------------------ceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC
Q psy11036 155 MT-LKTVSSFTG-------------------------GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL 208 (239)
Q Consensus 155 ~~-~~~~~~~~~-------------------------~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 208 (239)
+. ++....|.| +..+.++|..+ ++++..+.+|...|+.+.|.+|.+.|++.+.
T Consensus 625 i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s-gEcvA~m~GHsE~VTG~kF~nDCkHlISvsg 703 (1080)
T KOG1408|consen 625 IESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS-GECVAQMTGHSEAVTGVKFLNDCKHLISVSG 703 (1080)
T ss_pred ccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc-chhhhhhcCcchheeeeeecccchhheeecC
Confidence 99 777777732 44488899876 8999999999999999999999999999999
Q ss_pred CceEEEEEcc
Q psy11036 209 DHHAKIYEMV 218 (239)
Q Consensus 209 d~~i~iwd~~ 218 (239)
||.|.||.+.
T Consensus 704 DgCIFvW~lp 713 (1080)
T KOG1408|consen 704 DGCIFVWKLP 713 (1080)
T ss_pred CceEEEEECc
Confidence 9999999875
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-20 Score=145.04 Aligned_cols=113 Identities=23% Similarity=0.310 Sum_probs=97.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee------eec-CCCCEEEEEEecCC-cEEEEeCCCcEEEEEccC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM------SVN-HGSPVESVLCLPSG-GIFVTGGGLDVCIWDMLG 114 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~------~~~-~~~~v~~~~~~~~~-~~l~~~~~~~i~~~d~~~ 114 (239)
+.|+.+.|+|....+|++++.|..|+||.+..+.... .++ ....+.++.|+|.. .+++++..|.+.+||+.
T Consensus 80 d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~s- 158 (1012)
T KOG1445|consen 80 DQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDIS- 158 (1012)
T ss_pred ceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcc-
Confidence 9999999999989999999999999999998543222 223 34578899999954 46666668999999998
Q ss_pred CCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 115 GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 115 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
+++.+..+.+|...|.+..|+.||..+++.+.|..|+|||.+
T Consensus 159 tqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 159 TQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred cCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence 788888999999999999999999999999999999999987
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=144.37 Aligned_cols=183 Identities=27% Similarity=0.425 Sum_probs=149.8
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC--------CCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS--------PDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~--------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~ 112 (239)
+.|+.++|+| ....|++++.||++++|++.. -+++.++ .|.++|.|+++.+++..+++|+ ||+|+.|++
T Consensus 295 d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 295 DCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 8899999999 788999999999999999932 2355666 6999999999999999999999 999999976
Q ss_pred cCC---------CeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeee--------------------
Q psy11036 113 LGG---------GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSF-------------------- 163 (239)
Q Consensus 113 ~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------------------- 163 (239)
... ......+.+|.+.+..+++++....|++++.||++++|+........+
T Consensus 374 p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a 453 (577)
T KOG0642|consen 374 PPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPA 453 (577)
T ss_pred CCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhH
Confidence 522 124456789999999999999999999999999999999862222111
Q ss_pred ----------------------------------------------------e--cceeEEEEEccCCCEEEEEEecccC
Q psy11036 164 ----------------------------------------------------T--GGLDVCIWDMLGGGKLLHKFTCHHK 189 (239)
Q Consensus 164 ----------------------------------------------------~--~~~~i~~~d~~~~~~~~~~~~~h~~ 189 (239)
+ ....|+++|..+ +.+++....|..
T Consensus 454 ~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~ 532 (577)
T KOG0642|consen 454 HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT-GKILHSMVAHKD 532 (577)
T ss_pred hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc-cccchheeeccc
Confidence 0 022266777665 778888889999
Q ss_pred cEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 190 TVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 190 ~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.++++++.|+|.+|++++.|+.+++|.+....++....
T Consensus 533 svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 533 SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred eecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 99999999999999999999999999997766655443
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=142.05 Aligned_cols=218 Identities=18% Similarity=0.239 Sum_probs=165.8
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEE--eeCCCeEEEEeCCCCC--c-eeee
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVIS--GSYDKTVNVYDTRSPD--P-VMSV 81 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s--~~~dg~v~vw~~~~~~--~-~~~~ 81 (239)
...++|||....+....+..|.. . -.+.++.|+. . +.|++ .+.|..+++|.-.... . +...
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~-----------~-pg~~s~~w~~-~-n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k 76 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTA-----------E-PGDFSFNWQR-R-NFLVVASMAGDKVMRIKEKDGKTPEVPRVRK 76 (673)
T ss_pred CCceEEeecccccCccccccCCC-----------C-Ccceeeeccc-c-ceEEEeecCCceeEEEecccCCCCccceeec
Confidence 35789999987766666655541 1 3488999987 3 33444 4567788888754331 1 1111
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cce
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 159 (239)
.....-.|++......++++|+ .+.|+|||++ .+...+.++.|...|+++.++-...+||+++..|.|.|..+. +..
T Consensus 77 ~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 77 LTGDNAFCVACASQSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred cccchHHHHhhhhcceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence 2233455666666668899888 7999999998 777778889999999999999999999999999999998876 221
Q ss_pred Eeee------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEcCCceEEE
Q psy11036 160 VSSF------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKI 214 (239)
Q Consensus 160 ~~~~------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~i 214 (239)
...+ ...+.+.+||+........-...|..+...++|+| +..+|++.+.|..|.+
T Consensus 156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI 235 (673)
T ss_pred ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence 1111 34566999999876666666788999999999999 5567889999999999
Q ss_pred EEccCCeeeEEecCCCCeeeeEecC
Q psy11036 215 YEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 215 wd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
||....+....+....|..+++|+|
T Consensus 236 yD~~s~~s~~~l~y~~Plstvaf~~ 260 (673)
T KOG4378|consen 236 YDIRSQASTDRLTYSHPLSTVAFSE 260 (673)
T ss_pred eecccccccceeeecCCcceeeecC
Confidence 9999999999999999999999975
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.7e-20 Score=137.25 Aligned_cols=206 Identities=15% Similarity=0.163 Sum_probs=164.6
Q ss_pred CCCCEEEEeeCCCcceee--eeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec
Q psy11036 5 LPILIVALWDIPSEAQVS--TFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 82 (239)
|+....+.||+.+.+..+ ...++. +..+.....++ ++++|+..+..|.|.+....+++.+..+.
T Consensus 277 ~rrky~ysyDle~ak~~k~~~~~g~e-------------~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K 342 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTKLKPPYGVE-------------EKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK 342 (514)
T ss_pred ccceEEEEeeccccccccccCCCCcc-------------cchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee
Confidence 345778999998876433 233332 15677888999 78999999999999999999999999999
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCC-ceEEEEEcCCCCEEEEEecCCeEEEEEcccceE
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHK-TVTSLCLASGGKRLISASLDHHAKIYEMTLKTV 160 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 160 (239)
.++.|..++|+.+++.+++.+ +|.|.+||++ ....++++....+ .-++++.++++.+||+|+..|.|.|||.+....
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~-~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLR-QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA 421 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecC-CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhc
Confidence 999999999999998887776 7999999999 6677777763222 336677789999999999999999999761110
Q ss_pred eeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC--CceEEEEEccCCeeeEEecC----CCCeee
Q psy11036 161 SSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL--DHHAKIYEMVNFSPVHTLDY----PSPVLS 234 (239)
Q Consensus 161 ~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~----~~~v~~ 234 (239)
.+..+++..+..-...|++|.|+||.++||.+|. +..+|+-.+.+......++. -+.|+|
T Consensus 422 --------------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc 487 (514)
T KOG2055|consen 422 --------------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTC 487 (514)
T ss_pred --------------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEE
Confidence 1235677776667788999999999999988875 67899999988888887773 247999
Q ss_pred eEecC
Q psy11036 235 IDVSM 239 (239)
Q Consensus 235 ~~~sp 239 (239)
|+|||
T Consensus 488 ~aFSP 492 (514)
T KOG2055|consen 488 MAFSP 492 (514)
T ss_pred EEecC
Confidence 99998
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-20 Score=142.29 Aligned_cols=138 Identities=14% Similarity=0.171 Sum_probs=116.7
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N 82 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~ 82 (239)
+++||.+.+.+ +.++..+.+.+|. +.+.+-.|+| +|.-|+++++||.|++|.- +|-...++ .
T Consensus 81 ~s~DGkf~il~-k~~rVE~sv~AH~--------------~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q 143 (737)
T KOG1524|consen 81 CSNDGRFVILN-KSARVERSISAHA--------------AAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQ 143 (737)
T ss_pred EcCCceEEEec-ccchhhhhhhhhh--------------hhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHhh
Confidence 35778888877 3677777888998 9999999999 8999999999999999994 45444444 6
Q ss_pred CCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccce
Q psy11036 83 HGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKT 159 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~ 159 (239)
...+|.|++|.|+...++.+..+.+.+=.+. ....+-..++|.+-|.++.|++..+.+++|++|-..++||..+..
T Consensus 144 ~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~-~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~ 219 (737)
T KOG1524|consen 144 NEESIRCARWAPNSNSIVFCQGGHISIKPLA-ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN 219 (737)
T ss_pred cCceeEEEEECCCCCceEEecCCeEEEeecc-cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc
Confidence 7889999999999888888887888887777 555666788999999999999999999999999999999988433
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-19 Score=139.65 Aligned_cols=214 Identities=15% Similarity=0.091 Sum_probs=148.7
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC---CeEEEEeCCCCCceeeecC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD---KTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~v~vw~~~~~~~~~~~~~ 83 (239)
+..|++||.+... .+.+..+. ..+...+|+| +++.|+..+.+ ..|++||+.+++.......
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~--------------~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~ 246 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSS--------------QPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASF 246 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCC--------------CccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecC
Confidence 5799999986544 45666676 7899999999 78888776543 4799999988764333233
Q ss_pred CCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEe-cCCeEEEEEcc--cc
Q psy11036 84 GSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMT--LK 158 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~--~~ 158 (239)
.+....++|+|+|+.|+.+. +|.+.+|.++........+..+...+....|+|||+.|+..+ .++...||+++ +.
T Consensus 247 ~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 247 RGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred CCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 34455789999999888764 576666544322334555666777788999999999877655 57888888875 22
Q ss_pred eEee---------e---------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEc--c
Q psy11036 159 TVSS---------F---------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM--V 218 (239)
Q Consensus 159 ~~~~---------~---------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~--~ 218 (239)
.... + .+...+..||+.+...... ...+ ....+.|+|||++|+.++.++.+.+|++ .
T Consensus 327 ~~~~l~~~~~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~l-t~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~ 403 (429)
T PRK01742 327 GASLVGGRGYSAQISADGKTLVMINGDNVVKQDLTSGSTEVL-SSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA 403 (429)
T ss_pred CeEEecCCCCCccCCCCCCEEEEEcCCCEEEEECCCCCeEEe-cCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 1111 1 1223356688766432221 1121 2356789999999999999998888876 3
Q ss_pred CCeeeEEec-CCCCeeeeEecC
Q psy11036 219 NFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 219 ~~~~~~~~~-~~~~v~~~~~sp 239 (239)
+|+..+++. +++.+...+|||
T Consensus 404 ~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 404 DGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCCceEEccCCCCCCCCcccCC
Confidence 688888887 667899999998
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-18 Score=134.68 Aligned_cols=162 Identities=14% Similarity=0.184 Sum_probs=134.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee-e--cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS-V--NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~ 119 (239)
.+|+++|++. ..+.||.+-.||.|.+|+++..=.... + +....|.+++|++.++++-++.+|.|.-||+. +.++.
T Consensus 26 s~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~-~lk~~ 103 (691)
T KOG2048|consen 26 SEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLH-TLKQK 103 (691)
T ss_pred cceEEEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecc-cCcee
Confidence 7899999999 788899999999999999987643332 2 46678999999988877777779999999999 88888
Q ss_pred EEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC
Q psy11036 120 HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG 199 (239)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~ 199 (239)
..+..-.+.|.+++.+|.+..++.|+.||.+..++.....+ +....+...++.|.+++|+|+
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I------------------~~~r~l~rq~sRvLslsw~~~ 165 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI------------------TYKRSLMRQKSRVLSLSWNPT 165 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE------------------EEEeecccccceEEEEEecCC
Confidence 88888889999999999999999999999766666551111 111223344688999999999
Q ss_pred CCeEEEEcCCceEEEEEccCCeeeE
Q psy11036 200 GKRLISASLDHHAKIYEMVNFSPVH 224 (239)
Q Consensus 200 ~~~l~s~s~d~~i~iwd~~~~~~~~ 224 (239)
+..+++|+.||.|++||..++..+.
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred ccEEEecccCceEEEEEcCCCceEE
Confidence 9999999999999999999988777
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=141.24 Aligned_cols=195 Identities=25% Similarity=0.296 Sum_probs=151.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCc--EEEEeCCCcEEEEEccCC-----
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGG--IFVTGGGLDVCIWDMLGG----- 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~i~~~d~~~~----- 115 (239)
+.|.++...| .+..|++|+.||+|+||.+.++.++.++...+.|.|++|+|.+. .|+++.+..+.+.+..-.
T Consensus 401 g~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~ 479 (733)
T KOG0650|consen 401 GLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEV 479 (733)
T ss_pred CeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhh
Confidence 9999999999 89999999999999999999999999998889999999999654 444444444555443100
Q ss_pred -------------------------------CeEEEEEeccCCceEEEEEcCCCCEEEEEecC---CeEEEEEcc-cceE
Q psy11036 116 -------------------------------GKLLHKFTCHHKTVTSLCLASGGKRLISASLD---HHAKIYEMT-LKTV 160 (239)
Q Consensus 116 -------------------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~-~~~~ 160 (239)
..-+...-.|...|..+.|+..|.+|++...+ ..|.|+++. ....
T Consensus 480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ 559 (733)
T KOG0650|consen 480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ 559 (733)
T ss_pred cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc
Confidence 00112333478899999999999999997654 578888886 2211
Q ss_pred eee---------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 161 SSF---------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 161 ~~~---------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
.-| .....|++||+.. ++.+..+......|..++.+|.|.-|+.|+.|+.+..||+.-
T Consensus 560 ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 560 SPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred CchhhcCCceeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence 111 3345589999876 555556666677899999999999999999999999999964
Q ss_pred -CeeeEEec-CCCCeeeeEecC
Q psy11036 220 -FSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 220 -~~~~~~~~-~~~~v~~~~~sp 239 (239)
.++.+++. |...+++++||+
T Consensus 639 sskPyk~lr~H~~avr~Va~H~ 660 (733)
T KOG0650|consen 639 SSKPYKTLRLHEKAVRSVAFHK 660 (733)
T ss_pred CcchhHHhhhhhhhhhhhhhcc
Confidence 46778887 778999999885
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-18 Score=130.26 Aligned_cols=198 Identities=20% Similarity=0.247 Sum_probs=156.6
Q ss_pred CCCCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee
Q psy11036 1 MSHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS 80 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 80 (239)
|.+.|.|+.+++|+ ..+++.+.... +++.|+.|+| .+ .++.|...|...+.|.++...+..
T Consensus 383 ~~T~gqdk~v~lW~--~~k~~wt~~~~---------------d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~ 443 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWN--DHKLEWTKIIE---------------DPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTI 443 (626)
T ss_pred eeeccCcceEEEcc--CCceeEEEEec---------------CceeEeeccC-cc-eEEEeeccceEEEEecccceeEEE
Confidence 45678999999999 55655554444 7789999999 56 999999999999999999666655
Q ss_pred ecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEe-ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-c
Q psy11036 81 VNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFT-CHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-L 157 (239)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~ 157 (239)
-...+++++++|+|+|.++|+|+ |+.|.+|.+...+....... .+..+|+.+.|++|++++.+-+.|-.|..|... .
T Consensus 444 ~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~ 523 (626)
T KOG2106|consen 444 HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSEC 523 (626)
T ss_pred EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccC
Confidence 54589999999999999999999 89999999987776665543 344799999999999999999999999999443 1
Q ss_pred ceEeee--------------------------------------ec--ceeEEEE--EccCCCEEEEEEecccCcEEEEE
Q psy11036 158 KTVSSF--------------------------------------TG--GLDVCIW--DMLGGGKLLHKFTCHHKTVTSLC 195 (239)
Q Consensus 158 ~~~~~~--------------------------------------~~--~~~i~~~--d~~~~~~~~~~~~~h~~~v~~~~ 195 (239)
...... +| .+.+++| .......+.+++.+|.+-|++++
T Consensus 524 ~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~ 603 (626)
T KOG2106|consen 524 KQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVA 603 (626)
T ss_pred cccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEE
Confidence 111111 11 1224444 34455667788899999999999
Q ss_pred EccCCCeEEEEcCCceEEEEEc
Q psy11036 196 LASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 196 ~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
|..+...|++.+.|..|..|++
T Consensus 604 Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 604 FLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EeeCCceEEecCCCceEEEEEe
Confidence 9998888888889999999986
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=143.09 Aligned_cols=219 Identities=14% Similarity=0.179 Sum_probs=163.3
Q ss_pred CCCCCC------CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC
Q psy11036 1 MSHDLP------ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS 74 (239)
Q Consensus 1 fs~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 74 (239)
|.|||+ +..+.+||...|..++++++|+ +.|.|++|+. +|..+++|+.|..|.+|+-.
T Consensus 20 fkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHK--------------DtVycVAys~-dGkrFASG~aDK~VI~W~~k- 83 (1081)
T KOG1538|consen 20 FKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHK--------------DTVYCVAYAK-DGKRFASGSADKSVIIWTSK- 83 (1081)
T ss_pred ECCCCceEEEecCCEEEEEeCCCccccccccccc--------------ceEEEEEEcc-CCceeccCCCceeEEEeccc-
Confidence 567775 4789999999999999999999 9999999999 89999999999999999954
Q ss_pred CCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEE
Q psy11036 75 PDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 154 (239)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d 154 (239)
-+-+..+.|...|.|+.|+|-...+++++-...-+|... .+.+...+ ....+.+++|..||++++.|-.+|+|.+-+
T Consensus 84 lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~--qK~V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 84 LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE--QKSVSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred ccceeeeccCCeeeEeecCchHHHhhhcchhhccccChh--hhhHHhhh-hheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 333455689999999999999999999886778889875 22232222 345788999999999999999999999987
Q ss_pred cccceEeee--eccee-------------------EEEEEccCC-------CEEEEEEecccCcEEEEEEccCCCeEEEE
Q psy11036 155 MTLKTVSSF--TGGLD-------------------VCIWDMLGG-------GKLLHKFTCHHKTVTSLCLASGGKRLISA 206 (239)
Q Consensus 155 ~~~~~~~~~--~~~~~-------------------i~~~d~~~~-------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 206 (239)
-.++.-..+ .|+.+ +.+-|...+ ++.+..-+.-.-...|+.+.++|.+++.|
T Consensus 161 k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 161 KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLG 240 (1081)
T ss_pred CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEc
Confidence 653322222 22222 223232211 11111111122245688899999999999
Q ss_pred cCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 207 SLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 207 s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
+.|+.+.+|- +.|-.+.++. .+..|++++..|
T Consensus 241 Gsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 241 GSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP 273 (1081)
T ss_pred cCCCceEEEe-ecCeEEeeccccceeEEEEEEcc
Confidence 9999999995 5677777776 677888888776
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-19 Score=131.69 Aligned_cols=182 Identities=18% Similarity=0.249 Sum_probs=144.8
Q ss_pred CCCCCCC------CEEEEeeC-CCcceeeee--eCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEe
Q psy11036 1 MSHDLPI------LIVALWDI-PSEAQVSTF--TNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYD 71 (239)
Q Consensus 1 fs~~~~d------g~i~vwd~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 71 (239)
|+|||.. ..|+++|+ +.|+....+ ..+. .....+-|.+++|+|.+...++.|+....+-||.
T Consensus 166 Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~---------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~ 236 (406)
T KOG2919|consen 166 FSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKG---------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYN 236 (406)
T ss_pred ecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcc---------cccccceeeeeeccCCCCcceeeecccceeeeEe
Confidence 7788754 79999998 555432221 1120 0011277899999998778999999999999999
Q ss_pred CCCCCceeee-cCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCC-ceEEE--EEcCCCCEEEEEe
Q psy11036 72 TRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHK-TVTSL--CLASGGKRLISAS 145 (239)
Q Consensus 72 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~i~~i--~~~~~~~~l~~~~ 145 (239)
-..+.+...+ +|.+.|+.+.|.++|..|++|. +..|..||++..+.++..+..|.. .-..| ...|++++|++|+
T Consensus 237 ~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~ 316 (406)
T KOG2919|consen 237 DDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD 316 (406)
T ss_pred cCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC
Confidence 9888888888 7999999999999999999998 789999999988888888877765 33344 4468899999999
Q ss_pred cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc
Q psy11036 146 LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH 210 (239)
Q Consensus 146 ~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~ 210 (239)
.||.|++||++ .-+..+..+..|...+..++++|--.++|+++...
T Consensus 317 tdG~V~vwdlk-------------------~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 317 TDGSVRVWDLK-------------------DLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred CCccEEEEecC-------------------CCCCcccccccccccccceecCcccceeeeccCce
Confidence 99999999988 12445566677888999999999988889887653
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-18 Score=124.03 Aligned_cols=173 Identities=12% Similarity=0.208 Sum_probs=133.6
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec----C
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN----H 83 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~----~ 83 (239)
..+++++.+.+..+..+.-. .+|.++.++. +.|++.-.+ .|.|||+++.+.+.++. +
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fp---------------t~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n 128 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFP---------------TSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPN 128 (391)
T ss_pred ceEEEEEcccCceEEEEecC---------------CceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCC
Confidence 34555665555555554443 6799999965 566666664 49999999999988873 4
Q ss_pred CCCEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeE-EEEEcccce
Q psy11036 84 GSPVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA-KIYEMTLKT 159 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i-~i~d~~~~~ 159 (239)
...+.++..++.+.+++.-+ .|.|.+||.. +-++...+..|.+++.+++|+++|.+||+++..|+| ||+.+.
T Consensus 129 ~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~-nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~--- 204 (391)
T KOG2110|consen 129 PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI-NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP--- 204 (391)
T ss_pred ccceEeeccCCCCceEEecCCCCCceEEEEEcc-cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC---
Confidence 55677777777777888766 3999999998 888999999999999999999999999999999874 566665
Q ss_pred EeeeecceeEEEEEccCCCEEEEEEecc--cCcEEEEEEccCCCeEEEEcCCceEEEEEccCC
Q psy11036 160 VSSFTGGLDVCIWDMLGGGKLLHKFTCH--HKTVTSLCLASGGKRLISASLDHHAKIYEMVNF 220 (239)
Q Consensus 160 ~~~~~~~~~i~~~d~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~ 220 (239)
+++.+.+++.- ...|.+++|+|++++|++.|..++|.||.++..
T Consensus 205 -----------------~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 205 -----------------EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred -----------------CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 23444443321 235789999999999999999999999998654
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=154.16 Aligned_cols=187 Identities=16% Similarity=0.240 Sum_probs=151.8
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 82 (239)
..+++|.|.|||+.+.+.-.++... ...+.|.+++|+....++|++++.+|.+.|||++..+++..+.
T Consensus 134 SGa~~geI~iWDlnn~~tP~~~~~~------------~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls 201 (1049)
T KOG0307|consen 134 SGADDGEILIWDLNKPETPFTPGSQ------------APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS 201 (1049)
T ss_pred ccCCCCcEEEeccCCcCCCCCCCCC------------CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc
Confidence 4578899999999875544444221 1228899999998777899999999999999999998888773
Q ss_pred -CC--CCEEEEEEecCCc-EEEEeC--C--CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEE
Q psy11036 83 -HG--SPVESVLCLPSGG-IFVTGG--G--LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIY 153 (239)
Q Consensus 83 -~~--~~v~~~~~~~~~~-~l~~~~--~--~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~ 153 (239)
+. ..+..+.|+|+.. .+++++ | -.|.+||+|....+++.+.+|...|.++.|++.+ +++++++.|+.|.+|
T Consensus 202 ~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~w 281 (1049)
T KOG0307|consen 202 DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICW 281 (1049)
T ss_pred cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEe
Confidence 22 3478999999753 444444 3 4599999998888999999999999999999966 899999999999999
Q ss_pred EcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC-eEEEEcCCceEEEEEccCCe
Q psy11036 154 EMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISASLDHHAKIYEMVNFS 221 (239)
Q Consensus 154 d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~ 221 (239)
+.+ +++.+..+......+..+.|+|... .++.++.||.|-||.+....
T Consensus 282 N~~--------------------tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 282 NPN--------------------TGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCC--------------------CceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 988 4666666677778899999999655 78888999999999986543
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-19 Score=139.95 Aligned_cols=141 Identities=19% Similarity=0.312 Sum_probs=116.4
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-C-----CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEc
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-G-----LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 155 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 155 (239)
+|...|.+++.+|++++++++. . ..|++|+.. .-...+.+.+|+-.|+.++|+|||++|++.+.|.++.+|..
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~-~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA-NWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc-chhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence 4778899999999999999987 2 348999987 66667789999999999999999999999999999999987
Q ss_pred ccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCC--eeeEE---ecCCC
Q psy11036 156 TLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNF--SPVHT---LDYPS 230 (239)
Q Consensus 156 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~--~~~~~---~~~~~ 230 (239)
...... .......+.|..-|.+..|+|++.+++|+|.|++|++|..... +.+.. +++..
T Consensus 602 ~~~~~~----------------e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~ 665 (764)
T KOG1063|consen 602 QEDIKD----------------EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSL 665 (764)
T ss_pred ecccch----------------hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCC
Confidence 611111 1112336789999999999999999999999999999998776 44433 45788
Q ss_pred CeeeeEecC
Q psy11036 231 PVLSIDVSM 239 (239)
Q Consensus 231 ~v~~~~~sp 239 (239)
+|++++|.|
T Consensus 666 aVTAv~~~~ 674 (764)
T KOG1063|consen 666 AVTAVAYLP 674 (764)
T ss_pred ceeeEEeec
Confidence 999999876
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=141.04 Aligned_cols=139 Identities=14% Similarity=0.303 Sum_probs=112.2
Q ss_pred CCCCEEEEeeCCCc-ceee-eeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC------
Q psy11036 5 LPILIVALWDIPSE-AQVS-TFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD------ 76 (239)
Q Consensus 5 ~~dg~i~vwd~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~------ 76 (239)
|+.|.|.||+++.. ++-. .+.+-. ....|+.++|.|.+.+.|++++.||.|++|.+..+.
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~------------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~ 667 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLF------------NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM 667 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccc------------cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC
Confidence 55689999998653 2211 111110 005799999999999999999999999999987542
Q ss_pred -ceeee-cCCCCEEEEEEec-CCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy11036 77 -PVMSV-NHGSPVESVLCLP-SGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 152 (239)
Q Consensus 77 -~~~~~-~~~~~v~~~~~~~-~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 152 (239)
+...+ .|...|+.+.|+| ....|++++ |.+|++||+. .......+.+|.+.|..++|+|+|+.+++.+.||++++
T Consensus 668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~-~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA-NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV 746 (1012)
T ss_pred CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh-hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence 22333 5889999999999 455666666 8999999999 77788889999999999999999999999999999999
Q ss_pred EEcc
Q psy11036 153 YEMT 156 (239)
Q Consensus 153 ~d~~ 156 (239)
|+.+
T Consensus 747 y~Pr 750 (1012)
T KOG1445|consen 747 YEPR 750 (1012)
T ss_pred eCCC
Confidence 9988
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-19 Score=130.88 Aligned_cols=177 Identities=17% Similarity=0.255 Sum_probs=135.2
Q ss_pred EEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEe-
Q psy11036 46 RAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFT- 123 (239)
Q Consensus 46 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~- 123 (239)
.+++|+. ++..+++|+.||++|+|+..+...+... .|...|.++.|+|||+++++.+....+||+.+ .+..+.+..
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~-~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVN-TGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEec-cCchhhhcCC
Confidence 6889999 8899999999999999998877666655 79999999999999999999884499999998 665555443
Q ss_pred -ccCCceEEEEEcCCC-----CEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEc
Q psy11036 124 -CHHKTVTSLCLASGG-----KRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 197 (239)
Q Consensus 124 -~~~~~i~~i~~~~~~-----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s 197 (239)
........+.|+.++ ..++.....+.|+.|++. +|+-..-.+....+.. ...|++++.+
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~--------------~w~~~~~l~~~~~~~~-~~siSsl~VS 290 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS--------------LWSGSNFLRLRKKIKR-FKSISSLAVS 290 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEee--------------eeccccccchhhhhhc-cCcceeEEEc
Confidence 223356677887766 233333445667776654 4432211111112222 3469999999
Q ss_pred cCCCeEEEEcCCceEEEEEccCCeeeEEec--CCCCeeeeEecC
Q psy11036 198 SGGKRLISASLDHHAKIYEMVNFSPVHTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 198 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp 239 (239)
++|++++.|+.||.|.|++..+.+.++-++ |...|+.+.|+|
T Consensus 291 ~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P 334 (398)
T KOG0771|consen 291 DDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP 334 (398)
T ss_pred CCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC
Confidence 999999999999999999999999998887 888999999998
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=140.08 Aligned_cols=173 Identities=17% Similarity=0.231 Sum_probs=142.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC-Cceeeec-CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP-DPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~ 119 (239)
...+.++|.| ++++|++++.||.|++|+.... +....+. +...|.+++.. +..|++++ +++|.+|... .++.-
T Consensus 14 ~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp-s~~~~ 89 (933)
T KOG1274|consen 14 GGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFP-SGEED 89 (933)
T ss_pred CceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCC-CCCcc
Confidence 7799999999 7889999999999999998766 4444454 77788888765 44777777 7999999997 55444
Q ss_pred EEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC
Q psy11036 120 HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG 199 (239)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~ 199 (239)
..+....-++.+++++.+|+++|.|+.|-.|++-++. +......+++|.++|.++.|+|+
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~--------------------D~s~~~~lrgh~apVl~l~~~p~ 149 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD--------------------DSSQEKVLRGHDAPVLQLSYDPK 149 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc--------------------ccchheeecccCCceeeeeEcCC
Confidence 3444455789999999999999999999999999887 45556677999999999999999
Q ss_pred CCeEEEEcCCceEEEEEccCCeeeEEec---------CCCCeeeeEecC
Q psy11036 200 GKRLISASLDHHAKIYEMVNFSPVHTLD---------YPSPVLSIDVSM 239 (239)
Q Consensus 200 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~---------~~~~v~~~~~sp 239 (239)
+.+||+.+.||.|++||+.++....++. ....+.-++|+|
T Consensus 150 ~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P 198 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP 198 (933)
T ss_pred CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC
Confidence 9999999999999999999988776664 134577788887
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=127.24 Aligned_cols=198 Identities=15% Similarity=0.155 Sum_probs=160.3
Q ss_pred CCCEEEEeeCCCcc----eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC--CeEEEEeCCCCCcee
Q psy11036 6 PILIVALWDIPSEA----QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD--KTVNVYDTRSPDPVM 79 (239)
Q Consensus 6 ~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~v~vw~~~~~~~~~ 79 (239)
++|.+.+|..+.+. ++..+..+ ..+..+.-++....++++|+.. ..+.+||++..+.+.
T Consensus 123 ~sG~l~~~~~k~~d~hss~l~~la~g---------------~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw 187 (412)
T KOG3881|consen 123 SSGNLQVRHDKSGDLHSSKLIKLATG---------------PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW 187 (412)
T ss_pred cCCcEEEEeccCCccccccceeeecC---------------CceeeeccCCCCCceEecCchhcccceeeeecccceeee
Confidence 45888888876432 33444545 4577788888667788889998 889999999876554
Q ss_pred eec----------CCCCEEEEEEecC--CcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec
Q psy11036 80 SVN----------HGSPVESVLCLPS--GGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL 146 (239)
Q Consensus 80 ~~~----------~~~~v~~~~~~~~--~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 146 (239)
.-. .+-.++++.|-+. ...|+++. -+.+++||.+...+++..+.....+++++...|.++++++|..
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~ 267 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT 267 (412)
T ss_pred eccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc
Confidence 431 2345678899886 77888888 6999999999888999999988999999999999999999999
Q ss_pred CCeEEEEEcccceEeeeecceeEEEEEccCCCEEE-EEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEE
Q psy11036 147 DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLL-HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHT 225 (239)
Q Consensus 147 d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 225 (239)
-+.+..||++ .+... ..+++-.+.|+++..+|.+++|++++-|..|||+|+++.+++..
T Consensus 268 ~g~l~~FD~r--------------------~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 268 KGQLAKFDLR--------------------GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred cchhheeccc--------------------CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 9999999988 23333 34788899999999999999999999999999999999888888
Q ss_pred ecCCCCeeeeEec
Q psy11036 226 LDYPSPVLSIDVS 238 (239)
Q Consensus 226 ~~~~~~v~~~~~s 238 (239)
....+.++++-+.
T Consensus 328 vYvKs~lt~il~~ 340 (412)
T KOG3881|consen 328 VYVKSRLTFILLR 340 (412)
T ss_pred hhhhccccEEEec
Confidence 7777777776653
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=122.89 Aligned_cols=202 Identities=19% Similarity=0.207 Sum_probs=145.8
Q ss_pred CCEEEEeeCCCcce-eeeeeCCceeeccceeeccCCCCCeEEEEEec-CCCCEEEEeeCCCeEEEEeCCCCCceeee--c
Q psy11036 7 ILIVALWDIPSEAQ-VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSP-VSSDIVISGSYDKTVNVYDTRSPDPVMSV--N 82 (239)
Q Consensus 7 dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--~ 82 (239)
|..|.+|+++.+.. +..+..... .......++-+|+| .+++.+++. .|+++..||+++.++...+ .
T Consensus 143 dn~i~l~~l~ess~~vaev~ss~s---------~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 143 DNNIVLWSLDESSKIVAEVLSSES---------AEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred cCceEEEEcccCcchheeeccccc---------ccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence 67899999987655 444433210 01126788999999 456666664 5799999999999888877 4
Q ss_pred CCCCEEEEEEecCCcE-EEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCC-CCEEEEEecCCeEEEEEcc---
Q psy11036 83 HGSPVESVLCLPSGGI-FVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG-GKRLISASLDHHAKIYEMT--- 156 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~-l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~--- 156 (239)
|...|..+.|+|+.+. |++++ ||.|++||.+++..++.++.+|..-|.++.|+|. .+++++++.|..|.+|...
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence 8899999999998765 45555 6999999999999999999999999999999994 4688899999999999876
Q ss_pred cceEeeeecce-eEEEEEccC-----CCEEEEEEecccCcEEEEEEccCC-CeEEEEcCCceEEEEEcc
Q psy11036 157 LKTVSSFTGGL-DVCIWDMLG-----GGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMV 218 (239)
Q Consensus 157 ~~~~~~~~~~~-~i~~~d~~~-----~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~i~iwd~~ 218 (239)
.+....+..+. +-..-|.+. ....+.++..|...|.+++||.-. -++|+-|.||++.|=.+.
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 22211110000 000000000 112345678899999999999844 456888999999886553
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-16 Score=125.77 Aligned_cols=197 Identities=27% Similarity=0.487 Sum_probs=159.0
Q ss_pred CCCCEEEEeeCCC-cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC-CCeEEEEeCCCCCceeee-
Q psy11036 5 LPILIVALWDIPS-EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY-DKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~v~vw~~~~~~~~~~~- 81 (239)
..++.+.+||... ......+..|. ..|..++|+| ++..+++++. |+.+++|++..+..+..+
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEGHS--------------ESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLA 195 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEecCc--------------ccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeec
Confidence 3488999999987 78888899998 8999999999 6778888875 999999999987777777
Q ss_pred cCCCCEEEEEEecCCc-EEEEeC-CCcEEEEEccCCCeEEE-EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccc
Q psy11036 82 NHGSPVESVLCLPSGG-IFVTGG-GLDVCIWDMLGGGKLLH-KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLK 158 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~-~l~~~~-~~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~ 158 (239)
.|...+.+++|+|++. .+++++ |+.+.+||.. .+.... .+..|.... ...|+|++..+++++.|+.+++|+.+..
T Consensus 196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred cCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence 5899999999999998 444424 8999999887 666666 678888775 4489999988999999999999998811
Q ss_pred eEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec---CCCCeeee
Q psy11036 159 TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD---YPSPVLSI 235 (239)
Q Consensus 159 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~~~~v~~~ 235 (239)
......+..|...+.++.|+|++..+++++.|+.+.+|+..+........ +...+..+
T Consensus 274 -------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (466)
T COG2319 274 -------------------SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334 (466)
T ss_pred -------------------CcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEE
Confidence 11122225678899999999988888889889999999998877665553 44457777
Q ss_pred Ee
Q psy11036 236 DV 237 (239)
Q Consensus 236 ~~ 237 (239)
.|
T Consensus 335 ~~ 336 (466)
T COG2319 335 SF 336 (466)
T ss_pred EE
Confidence 66
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.8e-18 Score=121.74 Aligned_cols=175 Identities=15% Similarity=0.211 Sum_probs=129.5
Q ss_pred eEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEE
Q psy11036 45 VRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKF 122 (239)
Q Consensus 45 v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~ 122 (239)
..|+.|++ .|.+|++|..||.|.+||+.+....+.+ .|..+|++++|+++|+.|++++ |..+.+||+. .+.+++.+
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~-~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL-KGSPLKRI 103 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc-CCCceeEE
Confidence 77999999 8999999999999999999999877777 6999999999999999999999 8999999999 77788888
Q ss_pred eccCCceEEEEEcCCCC-EEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC
Q psy11036 123 TCHHKTVTSLCLASGGK-RLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK 201 (239)
Q Consensus 123 ~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 201 (239)
. ...+|....|+|..+ ..++.-.+..-.+-++....-..+ .... .. .-...-.+..|.+.|+
T Consensus 104 r-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~L---------p~d~-d~------dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 104 R-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVL---------PKDD-DG------DLNSSASHGVFDRRGK 166 (405)
T ss_pred E-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeec---------cCCC-cc------ccccccccccccCCCC
Confidence 7 678999999999553 333332333333333331000000 0000 00 0011112336889999
Q ss_pred eEEEEcCCceEEEEEccCCeeeEEecC--CCCeeeeEec
Q psy11036 202 RLISASLDHHAKIYEMVNFSPVHTLDY--PSPVLSIDVS 238 (239)
Q Consensus 202 ~l~s~s~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~s 238 (239)
++++|...|.+.++|..+.+++..++. ...|..+.++
T Consensus 167 yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s 205 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS 205 (405)
T ss_pred EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEe
Confidence 999999999999999999999988873 2567666654
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=133.32 Aligned_cols=164 Identities=15% Similarity=0.202 Sum_probs=123.1
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKF 122 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~ 122 (239)
..|+|+.|-|.+..+++.+-.+|.+.+||.... ....-.+....+++..+... .|.-.....++..+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-------~~~t~p~~~~~k~~~~f~i~------t~ksk~~rNPv~~w 286 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-------CGATAPSYQALKDGDQFAIL------TSKSKKTRNPVARW 286 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeecccc-------ccCCCCcccccCCCCeeEEe------eeeccccCCcccee
Confidence 789999999976778888889999999997211 01111111223345444432 22222122445555
Q ss_pred eccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCe
Q psy11036 123 TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR 202 (239)
Q Consensus 123 ~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 202 (239)
.--.+.|..++|+|||++||+.+.||.++|||.. ..+++..++..-+...|++|||||++
T Consensus 287 ~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd--------------------t~eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 287 HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD--------------------TQELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred EeccccccceeEcCCCceEEEEecCceEEEeecc--------------------HHHHHHHHHhhccceEEEEEcCCccE
Confidence 5456689999999999999999999999999998 33444444555678999999999999
Q ss_pred EEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 203 LISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 203 l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
+++|++|-.|.||.+..++.+..-+ |.+.|..++|.|
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999888 999999999976
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=129.38 Aligned_cols=180 Identities=19% Similarity=0.200 Sum_probs=140.4
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee--
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-- 81 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-- 81 (239)
-|.||.+|||+.++...+.....|. ..|.++.|+| ++.+|++-+.| ..+||+++++..+...
T Consensus 162 gg~dg~lRv~~~Ps~~t~l~e~~~~--------------~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 162 GGTDGTLRVWEWPSMLTILEEIAHH--------------AEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred ccccceEEEEecCcchhhhhhHhhc--------------CccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 3679999999998888888888887 9999999999 89999999999 8999999999776655
Q ss_pred -cCCCCEEEEEEecCC---cEEEEeC---CCcEEEEEccCCCe----EEEEEeccCCceEEEEEcCCCCEEEEEecCCeE
Q psy11036 82 -NHGSPVESVLCLPSG---GIFVTGG---GLDVCIWDMLGGGK----LLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 150 (239)
Q Consensus 82 -~~~~~v~~~~~~~~~---~~l~~~~---~~~i~~~d~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 150 (239)
........+.|+.++ .+.+++. .+.|..|++..... +..+.......|++++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 244567788888766 3333333 36777777652222 222222334579999999999999999999999
Q ss_pred EEEEcccceEeeeecceeEEEEEccCCCEEE-EEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 151 KIYEMTLKTVSSFTGGLDVCIWDMLGGGKLL-HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 151 ~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
.|++.. ..+.+ ..-+.|...|+.+.|+||.+++++.+.|....+..+.-
T Consensus 306 ai~~~~--------------------~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAK--------------------SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEec--------------------eeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999987 22222 23367999999999999999999999999998887743
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-17 Score=119.22 Aligned_cols=195 Identities=17% Similarity=0.255 Sum_probs=145.7
Q ss_pred CCeEEEEEecC---CCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCC-cEEEEeC-CCcEEEEEccCCC
Q psy11036 43 DYVRAGTVSPV---SSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSG-GIFVTGG-GLDVCIWDMLGGG 116 (239)
Q Consensus 43 ~~v~~~~~~~~---~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~-~~~i~~~d~~~~~ 116 (239)
+....++|+-+ +..+++.|+.-|.|+|.|+.+++....+ +|...|..+.++|.. +++++++ |..|++|+++ +.
T Consensus 90 Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-~~ 168 (385)
T KOG1034|consen 90 ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-TD 168 (385)
T ss_pred cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc-CC
Confidence 67888888763 2458899999999999999999988877 799999999999965 4666666 8999999999 77
Q ss_pred eEEEEE---eccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccc-------eEeee-----------------------
Q psy11036 117 KLLHKF---TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLK-------TVSSF----------------------- 163 (239)
Q Consensus 117 ~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~----------------------- 163 (239)
..+..+ .+|...|.++.|+++|.+|++++.|.++++|++..+ ....+
T Consensus 169 ~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 169 VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence 777665 479999999999999999999999999999998711 11000
Q ss_pred -------------------ecceeEEEEEccCC-------------CEEEEEEecccCcEEEEEE--ccCCCeEEEEcCC
Q psy11036 164 -------------------TGGLDVCIWDMLGG-------------GKLLHKFTCHHKTVTSLCL--ASGGKRLISASLD 209 (239)
Q Consensus 164 -------------------~~~~~i~~~d~~~~-------------~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~s~d 209 (239)
+.++.|..|-.-.- ...+..+.-....|.-+.| .|-++.||.|...
T Consensus 249 iHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 249 IHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred cccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCC
Confidence 34556888876111 1123334444455666654 4568899999999
Q ss_pred ceEEEEEccCCeee--EEec---CCCCeeeeEec
Q psy11036 210 HHAKIYEMVNFSPV--HTLD---YPSPVLSIDVS 238 (239)
Q Consensus 210 ~~i~iwd~~~~~~~--~~~~---~~~~v~~~~~s 238 (239)
|.|.+||++..++. .++. ....|...+||
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS 362 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFS 362 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeec
Confidence 99999999887663 2222 33466666665
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-20 Score=148.33 Aligned_cols=189 Identities=18% Similarity=0.338 Sum_probs=156.3
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
..|+|+.|.. .+.++++|+.|..++||.+++..+.... +|.+.++.++.+.+..++++++ |..|++|.++ .+.++.
T Consensus 191 naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~-~~~pvs 268 (1113)
T KOG0644|consen 191 NAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP-DGAPVS 268 (1113)
T ss_pred hheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC-CCchHH
Confidence 8999999999 8999999999999999999999998888 7999999999998888888888 7899999999 899999
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccc-eEee--------------e----------------------
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLK-TVSS--------------F---------------------- 163 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~--------------~---------------------- 163 (239)
.+.+|.+.|++++|+|-- +.+.||++++||.+.. .+.. +
T Consensus 269 vLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e 344 (1113)
T KOG0644|consen 269 VLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHE 344 (1113)
T ss_pred HHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccch
Confidence 999999999999999964 7788999999998711 1111 0
Q ss_pred --------------ecc-------------eeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEcCCceEEEE
Q psy11036 164 --------------TGG-------------LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIY 215 (239)
Q Consensus 164 --------------~~~-------------~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~iw 215 (239)
++. -.+++|++.+ ++..+.+.+|...+..+.++| |.+...+++.||...||
T Consensus 345 ~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iw 423 (1113)
T KOG0644|consen 345 FEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIW 423 (1113)
T ss_pred hhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc-chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEee
Confidence 111 1166788765 677788889999999999999 55666789999999999
Q ss_pred EccCCeeeEEec-CCCCeeeeEec
Q psy11036 216 EMVNFSPVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 216 d~~~~~~~~~~~-~~~~v~~~~~s 238 (239)
|+-.|.+++.+. ....+..-+||
T Consensus 424 di~eg~pik~y~~gh~kl~d~kFS 447 (1113)
T KOG0644|consen 424 DIWEGIPIKHYFIGHGKLVDGKFS 447 (1113)
T ss_pred ecccCCcceeeecccceeeccccC
Confidence 999998887665 33445555554
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-17 Score=114.24 Aligned_cols=199 Identities=15% Similarity=0.191 Sum_probs=143.6
Q ss_pred CCCCEEEEeeCCCc----------ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC
Q psy11036 5 LPILIVALWDIPSE----------AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS 74 (239)
Q Consensus 5 ~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 74 (239)
..+|+|.+..+.+. ..+-..++|. ++|+.++|+. .+|++|+. |.|+=|..+.
T Consensus 29 n~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahd--------------gpiy~~~f~d---~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 29 NLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHD--------------GPIYYLAFHD---DFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred cCCCeEEEEEehhhhccccCCCCCcceeeccccC--------------CCeeeeeeeh---hheeeccC-ceEEEeeehh
Confidence 46799999987542 1233445666 9999999974 57777765 9999998754
Q ss_pred CCc------eeee--c------CCCCEEEEEEecC-CcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCC
Q psy11036 75 PDP------VMSV--N------HGSPVESVLCLPS-GGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK 139 (239)
Q Consensus 75 ~~~------~~~~--~------~~~~v~~~~~~~~-~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 139 (239)
... .... + .-..|+++...|. +..+.+|+|+.++-||++ +++..+++++|...|.++.--....
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEEEcCCcceeeeeeecccCc
Confidence 322 1111 1 2246889999985 556666779999999999 9999999999999999998855556
Q ss_pred EEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEeccc-CcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 140 RLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH-KTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 140 ~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
.+++|++||++++||.+ .+.+..+. . .+....++.|. ..|-+++.+ ..+|++|+ ...+.+|.+
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie------~------yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhL 234 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIE------P------YKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHL 234 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEec------c------ccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEec
Confidence 78999999999999999 55544440 0 11111123333 346666654 56888775 457999999
Q ss_pred cCCeeeEEecCCCCeeeeEe
Q psy11036 218 VNFSPVHTLDYPSPVLSIDV 237 (239)
Q Consensus 218 ~~~~~~~~~~~~~~v~~~~~ 237 (239)
+..++...++.+.++..+.|
T Consensus 235 rsse~t~vfpipa~v~~v~F 254 (325)
T KOG0649|consen 235 RSSESTCVFPIPARVHLVDF 254 (325)
T ss_pred cCCCceEEEecccceeEeee
Confidence 99999999998888887776
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-18 Score=128.12 Aligned_cols=162 Identities=19% Similarity=0.299 Sum_probs=135.4
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce---------eee-cCCCCEEEEEEecCCcEEEEeCC-CcEEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV---------MSV-NHGSPVESVLCLPSGGIFVTGGG-LDVCIWD 111 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~---------~~~-~~~~~v~~~~~~~~~~~l~~~~~-~~i~~~d 111 (239)
.+|.++.|.++..+.+++|+.|..|++|-+.....- ..+ .|...|+++.|+|+|..+++|+| |.+.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 789999999955569999999999999998654322 123 58999999999999999999995 9999997
Q ss_pred ccC-------C--------CeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccC
Q psy11036 112 MLG-------G--------GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLG 176 (239)
Q Consensus 112 ~~~-------~--------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~ 176 (239)
... + ......+.+|...|..++|+|++.++++++.|+.+++||+.
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-------------------- 153 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-------------------- 153 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec--------------------
Confidence 651 0 12345567899999999999999999999999999999998
Q ss_pred CCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeE
Q psy11036 177 GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVH 224 (239)
Q Consensus 177 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~ 224 (239)
.++....+..|...+..++|.|-++++++-+.|...+.+.+...+.++
T Consensus 154 ~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~ 201 (434)
T KOG1009|consen 154 AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIK 201 (434)
T ss_pred cceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeee
Confidence 577777778999999999999999999999999988888776544433
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=136.26 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=138.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCC-----CeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYD-----KTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGG 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~ 115 (239)
-.|++++.+| ++++++++... ..|++|+..+-..+..+ .|.-.|+.++|+|++++|++.+ |+++.+|....+
T Consensus 526 yEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~ 604 (764)
T KOG1063|consen 526 YEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQED 604 (764)
T ss_pred eeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecc
Confidence 7899999999 89999998765 36899999988777766 7999999999999999999999 999999988633
Q ss_pred CeE---EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEE
Q psy11036 116 GKL---LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVT 192 (239)
Q Consensus 116 ~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~ 192 (239)
... ....+.|..-|.+..|+|++.+++|++.|.+|++|........ ..+......+..+|+
T Consensus 605 ~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~----------------~i~~~a~~~~~~aVT 668 (764)
T KOG1063|consen 605 IKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDK----------------YISRFACLKFSLAVT 668 (764)
T ss_pred cchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhh----------------hhhhhchhccCCcee
Confidence 222 2336789999999999999999999999999999988711000 001112345678899
Q ss_pred EEEEcc-C----CCeEEEEcCCceEEEEEccC-------Ce------eeEEecCCCCeeeeEecC
Q psy11036 193 SLCLAS-G----GKRLISASLDHHAKIYEMVN-------FS------PVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 193 ~~~~s~-~----~~~l~s~s~d~~i~iwd~~~-------~~------~~~~~~~~~~v~~~~~sp 239 (239)
.+++.| + +..++.|-..|.|.+|.... +. .-..+.+.+.|+-+.|+|
T Consensus 669 Av~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p 733 (764)
T KOG1063|consen 669 AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRP 733 (764)
T ss_pred eEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecc
Confidence 999987 2 23678888999999998651 11 111222556788888876
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.1e-20 Score=137.89 Aligned_cols=195 Identities=19% Similarity=0.232 Sum_probs=170.4
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
|+.|.|..+|..++++..++... ..|.++.|.. +.++++++ ....+.|||- .|..+..+.-.
T Consensus 148 GrKGHlAa~Dw~t~~L~~Ei~v~---------------Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~-~GtElHClk~~ 209 (545)
T KOG1272|consen 148 GRKGHLAAFDWVTKKLHFEINVM---------------ETVRDVTFLH-NEQFFAVA-QKKYVYVYDN-NGTELHCLKRH 209 (545)
T ss_pred CCccceeeeecccceeeeeeehh---------------hhhhhhhhhc-chHHHHhh-hhceEEEecC-CCcEEeehhhc
Confidence 56689999999999998888877 6799999998 67777765 5578999994 58888888777
Q ss_pred CCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeee
Q psy11036 85 SPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSF 163 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 163 (239)
.+|..+.|.|..-+|++++ .|.++.-|+. .++.+..+....+.+..++-+|-...+-+|...|+|.+|...
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS-~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~------- 281 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVS-TGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN------- 281 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeec-hhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC-------
Confidence 8899999999888888888 4999999998 899999998888999999999999999999999999999977
Q ss_pred ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCCeeeeEec
Q psy11036 164 TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVS 238 (239)
Q Consensus 164 ~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s 238 (239)
..+++..+..|.++|.++++.++|+|++|++.|..++|||++....+.++..+.+...+++|
T Consensus 282 -------------skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~S 343 (545)
T KOG1272|consen 282 -------------SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLS 343 (545)
T ss_pred -------------CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccc
Confidence 56777788899999999999999999999999999999999998888887766677776665
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.3e-17 Score=129.16 Aligned_cols=205 Identities=17% Similarity=0.188 Sum_probs=148.3
Q ss_pred CCEEEEeeCCCc-ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc--eeee--
Q psy11036 7 ILIVALWDIPSE-AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP--VMSV-- 81 (239)
Q Consensus 7 dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~--~~~~-- 81 (239)
++.+.+|++++. .+...+... ..|++++|+|.+.++++.|..+|+|.+||++.+.. ...+
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~---------------s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~ 285 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESP---------------SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA 285 (555)
T ss_pred CceEEEEecCCCCCceEEEecC---------------CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc
Confidence 358999999876 455555544 78999999999999999999999999999987765 2222
Q ss_pred ---cCCCCEEEEEEecCCcE--EEEeC-CCcEEEEEccCCCeEEEEE-----e------ccCCceEEEEEcC-CCCEEEE
Q psy11036 82 ---NHGSPVESVLCLPSGGI--FVTGG-GLDVCIWDMLGGGKLLHKF-----T------CHHKTVTSLCLAS-GGKRLIS 143 (239)
Q Consensus 82 ---~~~~~v~~~~~~~~~~~--l~~~~-~~~i~~~d~~~~~~~~~~~-----~------~~~~~i~~i~~~~-~~~~l~~ 143 (239)
.|..+++.+.|.++..- +++++ ||.|..|+++.-..+...+ . .....+++++|.+ +-..++.
T Consensus 286 ~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV 365 (555)
T KOG1587|consen 286 LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV 365 (555)
T ss_pred ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE
Confidence 48899999999875433 66665 9999999987433322211 1 1223688999988 4478999
Q ss_pred EecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc-CCe
Q psy11036 144 ASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV-NFS 221 (239)
Q Consensus 144 ~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~-~~~ 221 (239)
|+.+|.|.--+-. .+.-... ..+....+..|.++|.++.++|=+..++..+.|.+|+||... ...
T Consensus 366 GTe~G~v~~~~r~g~~~~~~~-------------~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~ 432 (555)
T KOG1587|consen 366 GTEEGKVYKGCRKGYTPAPEV-------------SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS 432 (555)
T ss_pred EcCCcEEEEEeccCCcccccc-------------cccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCC
Confidence 9999998764433 1100000 013344556788999999999966555544459999999988 778
Q ss_pred eeEEec-CCCCeeeeEecC
Q psy11036 222 PVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 222 ~~~~~~-~~~~v~~~~~sp 239 (239)
++..+. ....+++++|||
T Consensus 433 Pl~~~~~~~~~v~~vaWSp 451 (555)
T KOG1587|consen 433 PLLSLDSSPDYVTDVAWSP 451 (555)
T ss_pred cchhhhhccceeeeeEEcC
Confidence 888777 666799999998
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-18 Score=132.74 Aligned_cols=183 Identities=19% Similarity=0.257 Sum_probs=150.6
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
+++....|.|+++...+...-|+... +.|.++.|+| ...+|++++. ..|++||+..+..+..+
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~ksk--------------G~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~ 604 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSK--------------GLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLL 604 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcC--------------CceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHh
Confidence 45666788888887666555565555 8899999999 6777777765 67999999987777766
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceE
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTV 160 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 160 (239)
.....|..++.+|.|..++.++ |+.+..+|+....++.+++..|...+++++|++.-.++++|+.||++.||--.
T Consensus 605 tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~---- 680 (733)
T KOG0650|consen 605 TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM---- 680 (733)
T ss_pred cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeee----
Confidence 5667899999999999999998 89999999997888999999999999999999999999999999999998644
Q ss_pred eeeecceeEEEEE-ccC--CCEEEEEEecccCc----EEEEEEccCCCeEEEEcCCceEEEE
Q psy11036 161 SSFTGGLDVCIWD-MLG--GGKLLHKFTCHHKT----VTSLCLASGGKRLISASLDHHAKIY 215 (239)
Q Consensus 161 ~~~~~~~~i~~~d-~~~--~~~~~~~~~~h~~~----v~~~~~s~~~~~l~s~s~d~~i~iw 215 (239)
+|+ +.. ---++..+.+|... |....|+|...+|++++.||+|++|
T Consensus 681 ----------VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 681 ----------VYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ----------eehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 111 000 12456677888765 8899999999999999999999998
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-16 Score=111.91 Aligned_cols=154 Identities=19% Similarity=0.309 Sum_probs=110.0
Q ss_pred EEEEEecCCCCEEEE-ee---------CCCeEEEEeCCC-CCceeee--cCCCCEEEEEEecCCcEEEEeC---CCcEEE
Q psy11036 46 RAGTVSPVSSDIVIS-GS---------YDKTVNVYDTRS-PDPVMSV--NHGSPVESVLCLPSGGIFVTGG---GLDVCI 109 (239)
Q Consensus 46 ~~~~~~~~~~~~l~s-~~---------~dg~v~vw~~~~-~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~---~~~i~~ 109 (239)
..+.|+| .|+.|+. .. .-+...+|.++. +.+...+ ...++|.+++|+|++..+++.. ...+.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4688999 5655443 33 113455666532 2333433 4556799999999999876553 478999
Q ss_pred EEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecC---CeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec
Q psy11036 110 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD---HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC 186 (239)
Q Consensus 110 ~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 186 (239)
||++ .+.+..+. ...+..+.|+|+|+++++++.+ |.+.+||.+ ..+.+....
T Consensus 88 yd~~--~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~--------------------~~~~i~~~~- 142 (194)
T PF08662_consen 88 YDVK--GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR--------------------KKKKISTFE- 142 (194)
T ss_pred EcCc--ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC--------------------CCEEeeccc-
Confidence 9996 66666664 5677899999999999998754 568888877 344444443
Q ss_pred ccCcEEEEEEccCCCeEEEEcC------CceEEEEEccCCeeeEEec
Q psy11036 187 HHKTVTSLCLASGGKRLISASL------DHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 187 h~~~v~~~~~s~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~ 227 (239)
...++.++|+|||++|+++.. |..++||+. +|+.+.+..
T Consensus 143 -~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 143 -HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred -cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEecc
Confidence 234789999999999998864 788999998 577777655
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-17 Score=120.94 Aligned_cols=164 Identities=16% Similarity=0.209 Sum_probs=122.0
Q ss_pred CEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEec--CCcEEEEeC-CCcEEEEEccCCCeEE-EEEeccC-Cce
Q psy11036 56 DIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLP--SGGIFVTGG-GLDVCIWDMLGGGKLL-HKFTCHH-KTV 129 (239)
Q Consensus 56 ~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~-~~~i~~~d~~~~~~~~-~~~~~~~-~~i 129 (239)
..++++..+|.|++||..+++.+..+ .++..+..++|.. ....+.+++ ||+|++||+|...+.. .....+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 56888889999999999999888888 5788888899877 455666666 8999999999544332 2333444 466
Q ss_pred EEEEEcCCCCEEEEEec----CCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEE-EecccCcEEEEEEcc-CCCeE
Q psy11036 130 TSLCLASGGKRLISASL----DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHK-FTCHHKTVTSLCLAS-GGKRL 203 (239)
Q Consensus 130 ~~i~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~h~~~v~~~~~s~-~~~~l 203 (239)
.+++.+-.++.+++|.. +-.+.+||++ ...+++.. ...|...|++++|+| +.++|
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR-------------------~~qq~l~~~~eSH~DDVT~lrFHP~~pnlL 181 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVR-------------------SEQQLLRQLNESHNDDVTQLRFHPSDPNLL 181 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEec-------------------cccchhhhhhhhccCcceeEEecCCCCCeE
Confidence 77777667778888753 4455555555 44443333 356999999999999 56799
Q ss_pred EEEcCCceEEEEEccCC----eeeEEecCCCCeeeeEec
Q psy11036 204 ISASLDHHAKIYEMVNF----SPVHTLDYPSPVLSIDVS 238 (239)
Q Consensus 204 ~s~s~d~~i~iwd~~~~----~~~~~~~~~~~v~~~~~s 238 (239)
+|||.||.|.+||++.- .++..+++.+.|..+.|+
T Consensus 182 lSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~ 220 (376)
T KOG1188|consen 182 LSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWL 220 (376)
T ss_pred EeecccceEEeeecCCCcchhhHHHhhcccceeeeeeee
Confidence 99999999999999643 346667788888888875
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-15 Score=120.61 Aligned_cols=199 Identities=25% Similarity=0.436 Sum_probs=155.1
Q ss_pred CCCCEEEEeeCCCcc-eeeeeeCCceeeccceeeccCCCCCeEEEEE-ecCCCC-EEEEeeC-CCeEEEEeCCC-CCcee
Q psy11036 5 LPILIVALWDIPSEA-QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTV-SPVSSD-IVISGSY-DKTVNVYDTRS-PDPVM 79 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~-~l~s~~~-dg~v~vw~~~~-~~~~~ 79 (239)
+.|+.+.+|+...+. ....+..... ..+..+.+ .+ ++. .++..+. |+.+.+|+... .....
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 149 (466)
T COG2319 84 SSDGTIKLWDLDNGEKLIKSLEGLHD-------------SSVSKLALSSP-DGNSILLASSSLDGTVKLWDLSTPGKLIR 149 (466)
T ss_pred cCCCcEEEEEcCCCceeEEEEeccCC-------------CceeeEEEECC-CcceEEeccCCCCccEEEEEecCCCeEEE
Confidence 358999999998876 6667766430 26777777 77 444 5555444 99999999987 55555
Q ss_pred ee-cCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCC-EEEEEecCCeEEEEEc
Q psy11036 80 SV-NHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISASLDHHAKIYEM 155 (239)
Q Consensus 80 ~~-~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~ 155 (239)
.+ .|...+..++|+|++..+++++ ++.+++|++. ....+..+..|...+.+++|+|++. .+++++.|+.+++||.
T Consensus 150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~ 228 (466)
T COG2319 150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228 (466)
T ss_pred EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC-CCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEEC
Confidence 55 7889999999999998887776 7999999998 5778888888999999999999998 5555589999999976
Q ss_pred ccceEeeeecceeEEEEEccCCCEEEE-EEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCee-eEEe-cCCCCe
Q psy11036 156 TLKTVSSFTGGLDVCIWDMLGGGKLLH-KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSP-VHTL-DYPSPV 232 (239)
Q Consensus 156 ~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~-~~~~~v 232 (239)
. ...... .+..|.... ...|+|++.++++++.|+.+++|++..... +..+ .+...+
T Consensus 229 ~--------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v 287 (466)
T COG2319 229 S--------------------TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287 (466)
T ss_pred C--------------------CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccE
Confidence 6 233333 466777765 448999998999999999999999987664 4444 367789
Q ss_pred eeeEecC
Q psy11036 233 LSIDVSM 239 (239)
Q Consensus 233 ~~~~~sp 239 (239)
.++.|+|
T Consensus 288 ~~~~~~~ 294 (466)
T COG2319 288 LSVAFSP 294 (466)
T ss_pred EEEEECC
Confidence 9988876
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=128.19 Aligned_cols=203 Identities=19% Similarity=0.205 Sum_probs=148.2
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCC--CEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSS--DIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
+..|.||...+++++..+..|. .+++.+.+.|... .++++++.||.|++||...+..++++...
T Consensus 36 ~~~V~VyS~~Tg~~i~~l~~~~--------------a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~ 101 (792)
T KOG1963|consen 36 GNFVKVYSTATGECITSLEDHT--------------APLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN 101 (792)
T ss_pred CCEEEEEecchHhhhhhccccc--------------CccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC
Confidence 4789999999999999999999 9999999998544 46779999999999999888776666433
Q ss_pred CCEEEEEE-----------------------------------------------------------ecCCcEEEEeCCC
Q psy11036 85 SPVESVLC-----------------------------------------------------------LPSGGIFVTGGGL 105 (239)
Q Consensus 85 ~~v~~~~~-----------------------------------------------------------~~~~~~l~~~~~~ 105 (239)
.++.++.+ ++.|.+.....+.
T Consensus 102 ~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~ 181 (792)
T KOG1963|consen 102 LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMC 181 (792)
T ss_pred CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEee
Confidence 33333222 2222222222233
Q ss_pred cEEEEEccCCCeEEEE---EeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEE
Q psy11036 106 DVCIWDMLGGGKLLHK---FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLH 182 (239)
Q Consensus 106 ~i~~~d~~~~~~~~~~---~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 182 (239)
.+.+|+.....+.... -..|.-.+++.+++|.+++++++..||.|.+|.--+. ........
T Consensus 182 ~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~----------------~~~~~t~t 245 (792)
T KOG1963|consen 182 KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS----------------SDDSETCT 245 (792)
T ss_pred eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc----------------ccccccce
Confidence 3445554421111100 1136667899999999999999999999999964310 01234455
Q ss_pred EEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 183 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 183 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.++-|...|.+++|+++|.+|++|+..|.+.+|.+.++++..--...++|..+.+||
T Consensus 246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ 302 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP 302 (792)
T ss_pred EEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC
Confidence 678899999999999999999999999999999999998433333888999999987
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.7e-17 Score=112.32 Aligned_cols=162 Identities=15% Similarity=0.249 Sum_probs=128.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC----------Cceeee-cCCCCEEEEEEecCCcEEEEeCCCcEEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP----------DPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVCIWD 111 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d 111 (239)
..|..-+++| .+++|++|..+|+|.++.+.+. ..+... .|.+++..++|. ..+|++++||.|+-|.
T Consensus 11 ~tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWE 87 (325)
T ss_pred HHHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccCceEEEee
Confidence 3466778899 8999999999999999987632 122222 599999999998 6688899999999887
Q ss_pred ccCCCe------EEEEE-ecc-----CCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCE
Q psy11036 112 MLGGGK------LLHKF-TCH-----HKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGK 179 (239)
Q Consensus 112 ~~~~~~------~~~~~-~~~-----~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~ 179 (239)
-+...+ ..... ..| --.|+++...|..+.++.++.|+.++.||++ +++
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE--------------------~G~ 147 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE--------------------DGR 147 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEec--------------------CCE
Confidence 652211 11111 112 2368999999988888888899999999998 678
Q ss_pred EEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 180 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 180 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
...++++|+..|.++.--.....+++|++||++|+||.++++.++.+.
T Consensus 148 i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 148 IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 888889999999999885556678999999999999999999988876
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.8e-17 Score=116.49 Aligned_cols=180 Identities=17% Similarity=0.178 Sum_probs=136.5
Q ss_pred CCCCEEEEeeCCCcce---eeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 5 LPILIVALWDIPSEAQ---VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
+-|-+-.|||++++.. ...+-+|. ..|..++|...+.+.+++.+.||.||++|++..+--..+
T Consensus 170 SiDTTCTiWdie~~~~~~vkTQLIAHD--------------KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII 235 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGVSGTVKTQLIAHD--------------KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII 235 (364)
T ss_pred cccCeEEEEEEeeccccceeeEEEecC--------------cceeEEEeccCccceEEEecCCCcEEEEEecccccceEE
Confidence 4577889999998733 44577788 999999999855679999999999999999977644433
Q ss_pred -c---CCCCEEEEEEecCC-cEEEEeC-C-CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEE
Q psy11036 82 -N---HGSPVESVLCLPSG-GIFVTGG-G-LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIY 153 (239)
Q Consensus 82 -~---~~~~v~~~~~~~~~-~~l~~~~-~-~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~ 153 (239)
+ ...+...++|+++. +++++-. | ..|.+.|++....++..++.|.+.|..++|.|.. .+|++++.|..+.+|
T Consensus 236 YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliW 315 (364)
T KOG0290|consen 236 YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIW 315 (364)
T ss_pred ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEE
Confidence 2 25678889999855 4555554 4 8899999999999999999999999999999954 689999999999999
Q ss_pred EcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEcCCceEEE
Q psy11036 154 EMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKI 214 (239)
Q Consensus 154 d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~i 214 (239)
|+...... ....++..+. ..+.|..+.|++ .+.+++.+.. +++.|
T Consensus 316 Dl~q~~~~--------------~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 316 DLQQMPRE--------------NGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred eccccccc--------------CCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 99811100 0122333333 357799999997 5677877653 34433
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-17 Score=117.29 Aligned_cols=213 Identities=17% Similarity=0.196 Sum_probs=152.7
Q ss_pred CCEEEEeeCCCc---ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCC-CCCc--eee
Q psy11036 7 ILIVALWDIPSE---AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTR-SPDP--VMS 80 (239)
Q Consensus 7 dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~--~~~ 80 (239)
...|.||..... +..+++..|. ..|++++|+| ..+.|++++.|..-++|... .++. ...
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd--------------~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~~Wkptlv 95 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHD--------------KIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGGTWKPTLV 95 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhC--------------cceeEEeecC-CCCceeEccCCCCccccccCCCCeecccee
Confidence 357888877554 4677888888 9999999999 89999999999999999994 3332 223
Q ss_pred e-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeE---EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEc
Q psy11036 81 V-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKL---LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 155 (239)
Q Consensus 81 ~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 155 (239)
+ .+...++++.|+|.+..+++|+ ...|.+|-.+....- .+.-+.+...|+++.|+|++-+|++|+.|+..++|..
T Consensus 96 LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 96 LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence 3 7899999999999999999999 577888877622221 1223457788999999999999999999999999986
Q ss_pred ccceEeeeecceeEEEEEccCC-CEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCe-eeEEec-CCCCe
Q psy11036 156 TLKTVSSFTGGLDVCIWDMLGG-GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFS-PVHTLD-YPSPV 232 (239)
Q Consensus 156 ~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~-~~~~v 232 (239)
.-+.+.+- ..-..|+-+.. ++++.++....+.|..+.|+|+|..|+-.+.|..+.+=|..... .+.... ..-|.
T Consensus 176 yIK~Vdek---pap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ 252 (361)
T KOG1523|consen 176 YIKGVDEK---PAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPL 252 (361)
T ss_pred eeeccccC---CCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCc
Confidence 51111111 00111221111 23444454556889999999999999999999999999886654 233333 22344
Q ss_pred eeeEe
Q psy11036 233 LSIDV 237 (239)
Q Consensus 233 ~~~~~ 237 (239)
.++.|
T Consensus 253 ls~~~ 257 (361)
T KOG1523|consen 253 LSVSW 257 (361)
T ss_pred eeeEe
Confidence 44444
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-16 Score=124.30 Aligned_cols=191 Identities=14% Similarity=0.070 Sum_probs=124.7
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEE-EeeCCC--eEEEEeCCCCCceeeecCC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVI-SGSYDK--TVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg--~v~vw~~~~~~~~~~~~~~ 84 (239)
..|++|++.+++... +.... +.+...+|+| +++.|+ +.+.+| .|.+||+.+++........
T Consensus 223 ~~i~i~dl~~G~~~~-l~~~~--------------~~~~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~ 286 (429)
T PRK03629 223 SALVIQTLANGAVRQ-VASFP--------------RHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR 286 (429)
T ss_pred cEEEEEECCCCCeEE-ccCCC--------------CCcCCeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC
Confidence 578888888776433 22222 3345689999 676665 444455 5889999888765544555
Q ss_pred CCEEEEEEecCCcEEEEeCC--CcEEEE--EccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCC---eEEEEEccc
Q psy11036 85 SPVESVLCLPSGGIFVTGGG--LDVCIW--DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH---HAKIYEMTL 157 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~~--~~i~~~--d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~i~d~~~ 157 (239)
..+....|+|+|+.++..++ +...+| |+. .+ ....+...........|+|||++|+..+.++ .|.+||+.
T Consensus 287 ~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-~g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~- 363 (429)
T PRK03629 287 SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-GG-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA- 363 (429)
T ss_pred CCcCceEECCCCCEEEEEeCCCCCceEEEEECC-CC-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC-
Confidence 67788999999998877763 455555 554 33 3344444444566789999999988766542 35555554
Q ss_pred ceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCce---EEEEEccCCeeeEEec-CCCCee
Q psy11036 158 KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHH---AKIYEMVNFSPVHTLD-YPSPVL 233 (239)
Q Consensus 158 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~---i~iwd~~~~~~~~~~~-~~~~v~ 233 (239)
+. +. ..+.. ........|+|||+.|+.++.++. +.++++ +|+....+. +++.+.
T Consensus 364 ------------------~g-~~-~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~ 421 (429)
T PRK03629 364 ------------------TG-GV-QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVK 421 (429)
T ss_pred ------------------CC-Ce-EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcC
Confidence 22 11 11221 112335689999999998887764 677777 556666665 678899
Q ss_pred eeEecC
Q psy11036 234 SIDVSM 239 (239)
Q Consensus 234 ~~~~sp 239 (239)
..+|+|
T Consensus 422 ~p~Wsp 427 (429)
T PRK03629 422 FPAWSP 427 (429)
T ss_pred CcccCC
Confidence 999998
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-15 Score=109.69 Aligned_cols=174 Identities=15% Similarity=0.225 Sum_probs=130.2
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCC-CCCceeeec---
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTR-SPDPVMSVN--- 82 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~--- 82 (239)
...|.|||-...+++.++.-. .+|.++.+.+ ..|++.- ...|.||... +.+.+..+.
T Consensus 74 pNkviIWDD~k~~~i~el~f~---------------~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~ 134 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFN---------------SEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRS 134 (346)
T ss_pred CceEEEEecccCcEEEEEEec---------------cceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeeccc
Confidence 468999996667777777665 7899999976 4555554 4689999987 555555552
Q ss_pred CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCe-EEEEEeccCCceEEEEEcCCCCEEEEEecCCe-EEEEEcccc
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGK-LLHKFTCHHKTVTSLCLASGGKRLISASLDHH-AKIYEMTLK 158 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~-i~i~d~~~~ 158 (239)
.+..+.+++-..+...|+.-+ -|.|.+-|+..... ....+.+|...|.|++++.+|..+|+++..|+ |+|||..
T Consensus 135 NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~-- 212 (346)
T KOG2111|consen 135 NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE-- 212 (346)
T ss_pred CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC--
Confidence 344455444444555565555 49999999974333 35778899999999999999999999999987 5666666
Q ss_pred eEeeeecceeEEEEEccCCCEEEEEEec--ccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 159 TVSSFTGGLDVCIWDMLGGGKLLHKFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 159 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
.+.++.+++. ....|.+++||||..+||++|+.|+|.||.++.
T Consensus 213 ------------------~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 213 ------------------DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ------------------CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 2444444442 345699999999999999999999999999865
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-15 Score=112.16 Aligned_cols=170 Identities=15% Similarity=0.197 Sum_probs=133.1
Q ss_pred CeEEEEEecCCCCEEEEeeCC--CeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEE
Q psy11036 44 YVRAGTVSPVSSDIVISGSYD--KTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHK 121 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~d--g~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~ 121 (239)
.|..+-|+. .+++..+.+ +.+++++++.+..+..+..+.+|.++.++ .+.|++.-...|.|||++ .-+++++
T Consensus 48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--r~RLvV~Lee~IyIydI~-~MklLhT 121 (391)
T KOG2110|consen 48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMN--RKRLVVCLEESIYIYDIK-DMKLLHT 121 (391)
T ss_pred EEEEeeccc---ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEc--cceEEEEEcccEEEEecc-cceeehh
Confidence 445555543 566555544 45999999988888888888999999997 446666666669999999 7778877
Q ss_pred Eec---cCCceEEEEEcCCCCEEEEEe--cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEE
Q psy11036 122 FTC---HHKTVTSLCLASGGKRLISAS--LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL 196 (239)
Q Consensus 122 ~~~---~~~~i~~i~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~ 196 (239)
+.. +...+.++++++.+.+++.-+ ..|.|.+||+. +-+++..+..|.+++.+++|
T Consensus 122 I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~--------------------nl~~v~~I~aH~~~lAalaf 181 (391)
T KOG2110|consen 122 IETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI--------------------NLQPVNTINAHKGPLAALAF 181 (391)
T ss_pred hhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc--------------------cceeeeEEEecCCceeEEEE
Confidence 653 444566666666777888643 34677777766 47788888999999999999
Q ss_pred ccCCCeEEEEcCCce-EEEEEccCCeeeEEec---CCCCeeeeEecC
Q psy11036 197 ASGGKRLISASLDHH-AKIYEMVNFSPVHTLD---YPSPVLSIDVSM 239 (239)
Q Consensus 197 s~~~~~l~s~s~d~~-i~iwd~~~~~~~~~~~---~~~~v~~~~~sp 239 (239)
+++|.+|||+|+.|+ ||||.+.+|+.+.++. ....|.+++|+|
T Consensus 182 s~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 182 SPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred CCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence 999999999999997 7999999999999998 455899999987
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-15 Score=114.50 Aligned_cols=220 Identities=8% Similarity=0.114 Sum_probs=142.6
Q ss_pred CCCCCCEEEEeeCCC-cc--eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEe-eCCCeEEEEeCCC-CCc
Q psy11036 3 HDLPILIVALWDIPS-EA--QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISG-SYDKTVNVYDTRS-PDP 77 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~v~vw~~~~-~~~ 77 (239)
.++.++.|++||+.+ ++ .++.+... +....++++| ++++|+++ ..++.|.+|++.. ++.
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~---------------~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l 70 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDVP---------------GQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGAL 70 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEecC---------------CCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCce
Confidence 456789999999964 33 34445432 5567899999 77776555 4578899999863 332
Q ss_pred --eeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCe---EEEEEeccCCceEEEEEcCCCCEEEEEe-cCCe
Q psy11036 78 --VMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGK---LLHKFTCHHKTVTSLCLASGGKRLISAS-LDHH 149 (239)
Q Consensus 78 --~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~ 149 (239)
............++++|+++++++++ ++.|.+|++...+. .+..+. +......++++|+++++++++ .++.
T Consensus 71 ~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~ 149 (330)
T PRK11028 71 TFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDR 149 (330)
T ss_pred EEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCE
Confidence 22223445677899999999999887 68999999963332 223332 334467788999998886544 5699
Q ss_pred EEEEEcc-cceEe-------e-----------e-----------ecceeEEEEEccCC---CEEEEEEecc------cCc
Q psy11036 150 AKIYEMT-LKTVS-------S-----------F-----------TGGLDVCIWDMLGG---GKLLHKFTCH------HKT 190 (239)
Q Consensus 150 i~i~d~~-~~~~~-------~-----------~-----------~~~~~i~~~d~~~~---~~~~~~~~~h------~~~ 190 (239)
|.+||++ ...+. . + .+...+.+|++... .+.+..+..+ ...
T Consensus 150 v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 229 (330)
T PRK11028 150 IRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRW 229 (330)
T ss_pred EEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcc
Confidence 9999997 22110 0 0 12455888988632 2333333221 112
Q ss_pred EEEEEEccCCCeEEEEc-CCceEEEEEccCCe----eeEEecCCCCeeeeEecC
Q psy11036 191 VTSLCLASGGKRLISAS-LDHHAKIYEMVNFS----PVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 191 v~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~sp 239 (239)
...+.++|++++|+++. .++.|.+|++.... .+..+........++|+|
T Consensus 230 ~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~ 283 (330)
T PRK11028 230 AADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDH 283 (330)
T ss_pred ceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECC
Confidence 34688999999998885 47899999985432 333333333455666665
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.3e-18 Score=127.47 Aligned_cols=192 Identities=20% Similarity=0.295 Sum_probs=150.5
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGS 85 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~ 85 (239)
-..++|||- .|..+..++.+ ..|..+.|.| ..-+|++++..|.++--|+.+|+.+..+ ...+
T Consensus 190 K~y~yvYD~-~GtElHClk~~---------------~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G 252 (545)
T KOG1272|consen 190 KKYVYVYDN-NGTELHCLKRH---------------IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG 252 (545)
T ss_pred hceEEEecC-CCcEEeehhhc---------------Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCC
Confidence 467889984 67888889888 6799999999 7888999999999999999999999888 4567
Q ss_pred CEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeee
Q psy11036 86 PVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFT 164 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 164 (239)
.+..++-+|-+..+-.|. .|+|.+|... ..+++..+..|.++|.++++.++|++++|.+.|..++|||++
T Consensus 253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~-skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR-------- 323 (545)
T KOG1272|consen 253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPN-SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLR-------- 323 (545)
T ss_pred ccchhhcCCccceEEEcCCCceEEecCCC-CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeec--------
Confidence 888899999888888888 6999999998 788888888899999999999999999999999999999998
Q ss_pred cceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEc-cCCe-----eeEEecCCCCeeeeEec
Q psy11036 165 GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM-VNFS-----PVHTLDYPSPVLSIDVS 238 (239)
Q Consensus 165 ~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~-~~~~-----~~~~~~~~~~v~~~~~s 238 (239)
....+.++.. ..+...+++|..|- || .|....|.||.- -.+. +...-...++|.++.|+
T Consensus 324 ------------~~~ql~t~~t-p~~a~~ls~Sqkgl-LA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~Fc 388 (545)
T KOG1272|consen 324 ------------NFYQLHTYRT-PHPASNLSLSQKGL-LA-LSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFC 388 (545)
T ss_pred ------------cccccceeec-CCCccccccccccc-ee-eecCCeeeeehhhhcCCCCCCcchhhhccCcccccceec
Confidence 1122222222 34566788885543 33 444557999943 2211 22222356789999888
Q ss_pred C
Q psy11036 239 M 239 (239)
Q Consensus 239 p 239 (239)
|
T Consensus 389 P 389 (545)
T KOG1272|consen 389 P 389 (545)
T ss_pred c
Confidence 7
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=121.60 Aligned_cols=197 Identities=16% Similarity=0.122 Sum_probs=127.5
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC---CeEEEEeCCCCCceeeecC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD---KTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~v~vw~~~~~~~~~~~~~ 83 (239)
...|.++|.+ +...+.+..+. ..+.+.+|+| +++.|+..+.+ ..|.+||+.+++.......
T Consensus 175 ~~~L~~~D~d-G~~~~~l~~~~--------------~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~ 238 (427)
T PRK02889 175 RYQLQISDAD-GQNAQSALSSP--------------EPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANF 238 (427)
T ss_pred ccEEEEECCC-CCCceEeccCC--------------CCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecC
Confidence 4578888874 44444455555 7889999999 77777765532 4699999998876544345
Q ss_pred CCCEEEEEEecCCcEEEEe-C-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec-CCeEEEEEcccceE
Q psy11036 84 GSPVESVLCLPSGGIFVTG-G-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL-DHHAKIYEMTLKTV 160 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~-~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~~~~~ 160 (239)
.+.....+|+|+|+.++.. + ++...+|.++..+.....+..+........|+|||+.|+..+. ++...+|.++
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~---- 314 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP---- 314 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE----
Confidence 5667789999999988754 4 5766666554333345556555556677899999998886654 4555666543
Q ss_pred eeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc---eEEEEEccCCeeeEEecCCCCeeeeEe
Q psy11036 161 SSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH---HAKIYEMVNFSPVHTLDYPSPVLSIDV 237 (239)
Q Consensus 161 ~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~~~v~~~~~ 237 (239)
..+.......+. ........|+|||++|+..+.++ .|.+||+.+++... +.......+.+|
T Consensus 315 -------------~~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~ 378 (427)
T PRK02889 315 -------------ASGGAAQRVTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSF 378 (427)
T ss_pred -------------CCCCceEEEecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceE
Confidence 111111111112 22234578999999998776544 69999998876543 332333456677
Q ss_pred cC
Q psy11036 238 SM 239 (239)
Q Consensus 238 sp 239 (239)
+|
T Consensus 379 sp 380 (427)
T PRK02889 379 AP 380 (427)
T ss_pred CC
Confidence 65
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-16 Score=114.17 Aligned_cols=139 Identities=17% Similarity=0.282 Sum_probs=118.8
Q ss_pred CCCCCCEEEEeeCCCc-------ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC
Q psy11036 3 HDLPILIVALWDIPSE-------AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP 75 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 75 (239)
+.+.|.+|.||++..+ +++..+.+|. ..|--++|+|...+.|++++.|.+|.+||+.++
T Consensus 99 SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~--------------rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg 164 (472)
T KOG0303|consen 99 SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ--------------RRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG 164 (472)
T ss_pred cCCCCceEEEEECCCcccccCcccceEEEeecc--------------eeEEEEeecccchhhHhhccCCceEEEEeccCC
Confidence 4577899999998764 3466778888 899999999988899999999999999999999
Q ss_pred CceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCC-ceEEEEEcCCCCEEEEEe---cCCeE
Q psy11036 76 DPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHK-TVTSLCLASGGKRLISAS---LDHHA 150 (239)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~---~d~~i 150 (239)
+...++.|...|.++.|+.+|.++++++ |..|++||.+ .++.+..-.+|.+ .-....|-.+|..+.+|- .+.++
T Consensus 165 eali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr-~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~ 243 (472)
T KOG0303|consen 165 EALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR-RGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQI 243 (472)
T ss_pred ceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCC-CCcEeeecccccCCCcceeEEeccCceeeeccccccccce
Confidence 9999999999999999999999999999 8999999999 8888888778876 344566777888555543 46789
Q ss_pred EEEEcc
Q psy11036 151 KIYEMT 156 (239)
Q Consensus 151 ~i~d~~ 156 (239)
-+||..
T Consensus 244 aLwdp~ 249 (472)
T KOG0303|consen 244 ALWDPN 249 (472)
T ss_pred eccCcc
Confidence 999987
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-16 Score=114.12 Aligned_cols=180 Identities=15% Similarity=0.116 Sum_probs=140.7
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC---ceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCC-
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD---PVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGG- 116 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~---~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~- 116 (239)
++|+|.+|++ +...++.+-.+..|.||.....+ ...++ .|...|+.+.|+|....|++++ |..-++|.....+
T Consensus 11 ~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 11 EPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred CceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 8999999999 88999999999999999987766 34455 6999999999999999999998 8999999985333
Q ss_pred -eEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEE
Q psy11036 117 -KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLC 195 (239)
Q Consensus 117 -~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~ 195 (239)
++.-.+..++...+++.|+|.++.|++|+....|.||-++.+.-- --..+.-+.+.+.|.++.
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW----------------WVsKhikkPirStv~sld 153 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW----------------WVSKHIKKPIRSTVTSLD 153 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce----------------ehhhhhCCccccceeeee
Confidence 344455668899999999999999999999999998877611100 001112245678899999
Q ss_pred EccCCCeEEEEcCCceEEEEEcc------------------CCeeeEEe-cCCCCeeeeEecC
Q psy11036 196 LASGGKRLISASLDHHAKIYEMV------------------NFSPVHTL-DYPSPVLSIDVSM 239 (239)
Q Consensus 196 ~s~~~~~l~s~s~d~~i~iwd~~------------------~~~~~~~~-~~~~~v~~~~~sp 239 (239)
|+|++-+|+.||.|+..|+|... -|+++.++ ...+.+..+.|+|
T Consensus 154 WhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~ 216 (361)
T KOG1523|consen 154 WHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP 216 (361)
T ss_pred ccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence 99999999999999999999642 12334444 3556788888875
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=112.94 Aligned_cols=155 Identities=17% Similarity=0.291 Sum_probs=120.6
Q ss_pred CCeEEEEEecCCCC--EEEEeeCCCeEEEEeCCCCCceeee-----------cCCCCEEEEEEecCCcEEEEeC-CCcEE
Q psy11036 43 DYVRAGTVSPVSSD--IVISGSYDKTVNVYDTRSPDPVMSV-----------NHGSPVESVLCLPSGGIFVTGG-GLDVC 108 (239)
Q Consensus 43 ~~v~~~~~~~~~~~--~l~s~~~dg~v~vw~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~-~~~i~ 108 (239)
+.+.|..+....+. ++++|.++|.+.+||+.++..+..+ .|..+|.++.+.+.-..=++++ +..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 66777775543333 5677889999999999987433322 3889999999987554445555 67788
Q ss_pred EEEccCCCe---EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEe
Q psy11036 109 IWDMLGGGK---LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFT 185 (239)
Q Consensus 109 ~~d~~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 185 (239)
.|.+..... ...+..-.+-.|..+..-||++.+|+++.|+.|++|..+ +.+++..++
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr--------------------tl~pLAVLk 290 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR--------------------TLNPLAVLK 290 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec--------------------cCCchhhhh
Confidence 888863311 112222234568889999999999999999999999988 677888889
Q ss_pred cccCcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 186 CHHKTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 186 ~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
-|...|.+++|+|+..++|.+|.|++|.+|++
T Consensus 291 yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999986
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-16 Score=111.19 Aligned_cols=200 Identities=20% Similarity=0.265 Sum_probs=143.3
Q ss_pred CCCEEEEeeCCCcceeeeee-CCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce------
Q psy11036 6 PILIVALWDIPSEAQVSTFT-NHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV------ 78 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~------ 78 (239)
.-|.|.+|++.+.+....++ .+. ..|+.+.--| + ..+.+-+.|+.+.+|++.-...+
T Consensus 33 ~~G~V~~w~lqt~r~~~~~r~~g~--------------~~it~lq~~p-~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~ 96 (323)
T KOG0322|consen 33 SVGIVKMWVLQTERDLPLIRLFGR--------------LFITNLQSIP-N-DSLDTQGRDPLLILWTIAYSAFISIHSIV 96 (323)
T ss_pred ccceEEEEEeecCccchhhhhhcc--------------ceeeceeecC-C-cchhhcCCCceEEEEEccCcceEEEeeee
Confidence 34899999999999888888 455 7899999988 4 67888899999999987642100
Q ss_pred --------eee-------------c---------------------------CCCCEEEEEEec-C-CcEEEEeC--CCc
Q psy11036 79 --------MSV-------------N---------------------------HGSPVESVLCLP-S-GGIFVTGG--GLD 106 (239)
Q Consensus 79 --------~~~-------------~---------------------------~~~~v~~~~~~~-~-~~~l~~~~--~~~ 106 (239)
..+ . ..+.+.+..+.. + ...++.++ +|.
T Consensus 97 ~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsgh 176 (323)
T KOG0322|consen 97 VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGH 176 (323)
T ss_pred ccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCe
Confidence 000 0 112233333221 2 23444444 699
Q ss_pred EEEEEccCCCe----------EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEcc
Q psy11036 107 VCIWDMLGGGK----------LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDML 175 (239)
Q Consensus 107 i~~~d~~~~~~----------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~ 175 (239)
+.+||+. .+. .......|.++|.++.+.+....=++|+.+..+..|+++ ....
T Consensus 177 vv~wd~S-~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs--------------- 240 (323)
T KOG0322|consen 177 VVIWDLS-TGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS--------------- 240 (323)
T ss_pred EEEEEcc-CCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc---------------
Confidence 9999998 432 223334689999999998876777888888889899887 1000
Q ss_pred CCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 176 GGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 176 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
.+.-.+..-..-.|..+..-||++.+||++.|++||||.-+++.++..+. |.+.|++++|+|
T Consensus 241 --lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp 303 (323)
T KOG0322|consen 241 --LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP 303 (323)
T ss_pred --ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC
Confidence 01111112223457888999999999999999999999999999999998 889999999997
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=126.15 Aligned_cols=208 Identities=14% Similarity=0.223 Sum_probs=141.9
Q ss_pred CCCCCEEEEeeC-CCc----ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce
Q psy11036 4 DLPILIVALWDI-PSE----AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV 78 (239)
Q Consensus 4 ~~~dg~i~vwd~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~ 78 (239)
.+.||.|+||+- .++ +.+..+.+-. ...+...+.=.-+.|..+.|.++++ +.-..|+|||....+..
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls-------~~~~~~r~~~~v~dWqQ~~G~Ll~t-Gd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLS-------DQLPGARGTGLVVDWQQQSGHLLVT-GDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeecccc-------ccCccCCCCCeeeehhhhCCeEEec-CCeeEEEEEecccceeE
Confidence 467899999963 332 3333222211 0011111222557888855555554 55789999999988877
Q ss_pred eeec--CCCCEEEEEEec-CCcEEEEeC-CCcEEEEEccCCCe--EEEEEeccCCc--eEEEEEcCCCC-EEEEEecCCe
Q psy11036 79 MSVN--HGSPVESVLCLP-SGGIFVTGG-GLDVCIWDMLGGGK--LLHKFTCHHKT--VTSLCLASGGK-RLISASLDHH 149 (239)
Q Consensus 79 ~~~~--~~~~v~~~~~~~-~~~~l~~~~-~~~i~~~d~~~~~~--~~~~~~~~~~~--i~~i~~~~~~~-~l~~~~~d~~ 149 (239)
..+. ....++++.-+. .|..+++|- ||.|++||.+.... .+...+.|+.. |..+.+.++|- .|++|+.||.
T Consensus 1201 ~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1201 ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence 7763 455677776544 467788777 89999999985443 66777888887 99999998774 5999999999
Q ss_pred EEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecc---cCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEe
Q psy11036 150 AKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH---HKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226 (239)
Q Consensus 150 i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 226 (239)
|++||+++....++ .....| .+..+++..+++...+|+|+. +.|+||++. |+.+..+
T Consensus 1281 I~~~DlR~~~~e~~------------------~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~ 1340 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETF------------------LTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNII 1340 (1387)
T ss_pred EEEEecccCccccc------------------ceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhccc
Confidence 99999993221111 111122 235899999999999999998 999999984 4554444
Q ss_pred c--------CCCCeeeeEecC
Q psy11036 227 D--------YPSPVLSIDVSM 239 (239)
Q Consensus 227 ~--------~~~~v~~~~~sp 239 (239)
. ..+.+.+++|||
T Consensus 1341 k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1341 KYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred ccCcccccCcCCCcceeeecc
Confidence 3 234789999997
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-17 Score=127.60 Aligned_cols=171 Identities=20% Similarity=0.278 Sum_probs=131.7
Q ss_pred eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee--cCCCCEEEEEEec--C
Q psy11036 20 QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--NHGSPVESVLCLP--S 95 (239)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~--~ 95 (239)
+.+++.+|+ +.|.|++|+. +|.+|++|+.|-.+.|||.-..+.+..+ +|...|.++.|-| +
T Consensus 42 lE~eL~GH~--------------GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 42 LEAELTGHT--------------GCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred hhhhhcccc--------------ceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC
Confidence 345678888 9999999999 8999999999999999999888888777 7999999999999 4
Q ss_pred CcEEEEeC-CCcEEEEEccC---------CCeEEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEEccc--ceEee
Q psy11036 96 GGIFVTGG-GLDVCIWDMLG---------GGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMTL--KTVSS 162 (239)
Q Consensus 96 ~~~l~~~~-~~~i~~~d~~~---------~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~--~~~~~ 162 (239)
.+.+++|. |..|+++|+.. .......+..|...|..|+-.|++ ..+.++++||+++-+|++. .+...
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc
Confidence 55666666 89999999973 123445566789999999999988 7899999999999999981 11111
Q ss_pred eecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC-CCeEEEEcCCceEEEEEc
Q psy11036 163 FTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG-GKRLISASLDHHAKIYEM 217 (239)
Q Consensus 163 ~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~i~iwd~ 217 (239)
.. -...+..+...--...++..+|. ..+|+.|+.|-..++||.
T Consensus 187 ~~------------~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 187 ED------------CPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred cc------------ccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 10 00011111122234678899994 568899999999999994
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-15 Score=117.83 Aligned_cols=193 Identities=16% Similarity=0.108 Sum_probs=129.5
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC---CCeEEEEeCCCCCceeeecC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY---DKTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~v~vw~~~~~~~~~~~~~ 83 (239)
...|+++|.+. ...+.+..+. ..+.+.+|+| +++.|+..+. +..|.+||+.+++.......
T Consensus 181 ~~~l~~~d~dg-~~~~~lt~~~--------------~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~ 244 (435)
T PRK05137 181 IKRLAIMDQDG-ANVRYLTDGS--------------SLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRELVGNF 244 (435)
T ss_pred ceEEEEECCCC-CCcEEEecCC--------------CCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEEeecC
Confidence 45889999854 4445566666 7899999999 6777776553 46899999988876443356
Q ss_pred CCCEEEEEEecCCcEEEEeC--CC--cEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec-CC--eEEEEEcc
Q psy11036 84 GSPVESVLCLPSGGIFVTGG--GL--DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL-DH--HAKIYEMT 156 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~--~~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~i~d~~ 156 (239)
.+.+...+|+|+|+.++... ++ .|.+||+. .+ ....+..+........|+|||+.|+..+. ++ .|+++|+.
T Consensus 245 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 245 PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR-SG-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred CCcccCcEECCCCCEEEEEEecCCCceEEEEECC-CC-ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC
Confidence 67778899999999876443 44 47777886 44 34556656666778999999998887764 33 34455544
Q ss_pred cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCC---ceEEEEEccCCeeeEEecCCCCee
Q psy11036 157 LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD---HHAKIYEMVNFSPVHTLDYPSPVL 233 (239)
Q Consensus 157 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~~~v~ 233 (239)
. ++. ..+..+...+....|+|||+.|+..+.+ ..|.+||+.++. ...+.....+.
T Consensus 323 -------------------g-~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~ 380 (435)
T PRK05137 323 -------------------G-SNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVE 380 (435)
T ss_pred -------------------C-CCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCC
Confidence 2 211 2222234456678899999999876543 368888885543 33344333566
Q ss_pred eeEecC
Q psy11036 234 SIDVSM 239 (239)
Q Consensus 234 ~~~~sp 239 (239)
+.+|+|
T Consensus 381 ~p~~sp 386 (435)
T PRK05137 381 GPTWAP 386 (435)
T ss_pred CCeECC
Confidence 677776
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-16 Score=128.71 Aligned_cols=188 Identities=20% Similarity=0.244 Sum_probs=141.1
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc---eeee
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP---VMSV 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~---~~~~ 81 (239)
|.-..|+|||++..+.+..+..... ..|+++.-+...++.+++|..||.|++||.+...+ +...
T Consensus 1184 Gd~r~IRIWDa~~E~~~~diP~~s~-------------t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHKEQVVADIPYGSS-------------TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred CCeeEEEEEecccceeEeecccCCC-------------ccceeecccccCCceEEEeecCCceEEeecccCCccccceee
Confidence 4457899999988888877765542 67888877765789999999999999999886543 2233
Q ss_pred -cCCCC--EEEEEEecCCcE-EEEeC-CCcEEEEEccCC-CeEEEEEeccC--C-ceEEEEEcCCCCEEEEEecCCeEEE
Q psy11036 82 -NHGSP--VESVLCLPSGGI-FVTGG-GLDVCIWDMLGG-GKLLHKFTCHH--K-TVTSLCLASGGKRLISASLDHHAKI 152 (239)
Q Consensus 82 -~~~~~--v~~~~~~~~~~~-l~~~~-~~~i~~~d~~~~-~~~~~~~~~~~--~-~i~~i~~~~~~~~l~~~~~d~~i~i 152 (239)
.|... |..+.+.++|-- +++|+ +|.|++||++.. .+....+..|. + ..+++..+++...+|+|+. +.|+|
T Consensus 1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKI 1329 (1387)
T ss_pred cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEE
Confidence 46555 999999886654 77777 899999999952 33333333333 3 5899999999999999988 99999
Q ss_pred EEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCC
Q psy11036 153 YEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNF 220 (239)
Q Consensus 153 ~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~ 220 (239)
|++.++.+..+. ... ..+....+.+.+++|+|..-.+|.|+.|..|.||.....
T Consensus 1330 y~~~G~~l~~~k-----------~n~---~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1330 YSLSGEQLNIIK-----------YNP---GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred EecChhhhcccc-----------cCc---ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 999966655551 011 111223456799999999999999999999999987654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-15 Score=119.03 Aligned_cols=192 Identities=14% Similarity=0.085 Sum_probs=126.9
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEE-EEeeCCCe--EEEEeCCCCCceeeecC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIV-ISGSYDKT--VNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~--v~vw~~~~~~~~~~~~~ 83 (239)
+..|++||+.+++.. .+..+. +.+...+|+| +++.| ++.+.++. |.+||+.+++......+
T Consensus 225 ~~~i~~~dl~~g~~~-~l~~~~--------------g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~ 288 (435)
T PRK05137 225 RPRVYLLDLETGQRE-LVGNFP--------------GMTFAPRFSP-DGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDS 288 (435)
T ss_pred CCEEEEEECCCCcEE-EeecCC--------------CcccCcEECC-CCCEEEEEEecCCCceEEEEECCCCceEEccCC
Confidence 468999999887653 344444 6677899999 56654 56666655 77778887765443355
Q ss_pred CCCEEEEEEecCCcEEEEeCC--C--cEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCC---eEEEEEcc
Q psy11036 84 GSPVESVLCLPSGGIFVTGGG--L--DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH---HAKIYEMT 156 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~~--~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~i~d~~ 156 (239)
........|+|+|+.++..++ + .|.++|+. .+ ....+..+...+....|+|+|+.|+....++ .|.+||+.
T Consensus 289 ~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~-g~-~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 289 PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD-GS-NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred CCccCceeEcCCCCEEEEEECCCCCCeEEEEECC-CC-CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 556677899999998887763 3 57777875 33 3344444455667789999999998876532 34455543
Q ss_pred cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCC------ceEEEEEccCCeeeEEecCCC
Q psy11036 157 LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD------HHAKIYEMVNFSPVHTLDYPS 230 (239)
Q Consensus 157 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~~ 230 (239)
.... ..+. ....+....|+|||+.|+..+.+ ..+.++|+..++. ..+..++
T Consensus 367 -------------------~~~~--~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~ 423 (435)
T PRK05137 367 -------------------GSGE--RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG 423 (435)
T ss_pred -------------------CCce--Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC
Confidence 2111 1111 12235678999999988765432 3688888866554 4555566
Q ss_pred CeeeeEecC
Q psy11036 231 PVLSIDVSM 239 (239)
Q Consensus 231 ~v~~~~~sp 239 (239)
.+...+|+|
T Consensus 424 ~~~~p~Wsp 432 (435)
T PRK05137 424 DASDPAWSP 432 (435)
T ss_pred CccCcccCC
Confidence 688888887
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-15 Score=106.11 Aligned_cols=113 Identities=23% Similarity=0.388 Sum_probs=89.0
Q ss_pred CCeEEEEEecCCCCEEE--EeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC----CCcEEEEEccCCC
Q psy11036 43 DYVRAGTVSPVSSDIVI--SGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG----GLDVCIWDMLGGG 116 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~--s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~i~~~d~~~~~ 116 (239)
++|.+++|+| +++.++ .|..++.+.+||++ ++.+..++ ...+..+.|+|+|+++++++ .|.+.+||.+ ..
T Consensus 60 ~~I~~~~WsP-~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~-~~ 135 (194)
T PF08662_consen 60 GPIHDVAWSP-NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR-KK 135 (194)
T ss_pred CceEEEEECc-CCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC-CC
Confidence 5799999999 566543 34567899999996 66666664 46778999999999999987 3779999998 77
Q ss_pred eEEEEEeccCCceEEEEEcCCCCEEEEEec------CCeEEEEEcccceEe
Q psy11036 117 KLLHKFTCHHKTVTSLCLASGGKRLISASL------DHHAKIYEMTLKTVS 161 (239)
Q Consensus 117 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~ 161 (239)
+.+.... |. .++.++|+|+|++|+++.. |+.++||+..++.+.
T Consensus 136 ~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 136 KKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred EEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeE
Confidence 7777665 33 4789999999999999875 677888888744443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.6e-15 Score=117.11 Aligned_cols=191 Identities=15% Similarity=0.090 Sum_probs=123.0
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEE-EEeeCCC--eEEEEeCCCCCceeeecCC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIV-ISGSYDK--TVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg--~v~vw~~~~~~~~~~~~~~ 84 (239)
..|++||+.+++... +.... +...+.+|+| +++.| ++.+.+| .|.+||+.+++......+.
T Consensus 228 ~~l~~~dl~~g~~~~-l~~~~--------------g~~~~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~ 291 (433)
T PRK04922 228 SAIYVQDLATGQREL-VASFR--------------GINGAPSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF 291 (433)
T ss_pred cEEEEEECCCCCEEE-eccCC--------------CCccCceECC-CCCEEEEEEeCCCCceEEEEECCCCCeEECccCC
Confidence 578999998776532 33333 4455789999 56654 5555555 5999999887754433454
Q ss_pred CCEEEEEEecCCcEEEEeC--CCc--EEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCC---eEEEEEccc
Q psy11036 85 SPVESVLCLPSGGIFVTGG--GLD--VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH---HAKIYEMTL 157 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~--~~~--i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~i~d~~~ 157 (239)
......+|+|+|+.++..+ ++. |.++++. .++ ...+..+.......+|+|+|++++..+.++ .|.+||+.
T Consensus 292 ~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~- 368 (433)
T PRK04922 292 GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-GGS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS- 368 (433)
T ss_pred CCccceEECCCCCEEEEEECCCCCceEEEEECC-CCC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC-
Confidence 5556789999999888776 344 5556665 333 333333334455789999999988765443 46666665
Q ss_pred ceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCC---ceEEEEEccCCeeeEEec-CCCCee
Q psy11036 158 KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD---HHAKIYEMVNFSPVHTLD-YPSPVL 233 (239)
Q Consensus 158 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~-~~~~v~ 233 (239)
+ ++.. .+. +........|+|||++++..+.+ +.|.++++. +.....+. ..+.+.
T Consensus 369 ------------------~-g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~ 426 (433)
T PRK04922 369 ------------------T-GSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVR 426 (433)
T ss_pred ------------------C-CCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCC
Confidence 2 2211 111 12234456899999988766543 468888884 44555555 457788
Q ss_pred eeEecC
Q psy11036 234 SIDVSM 239 (239)
Q Consensus 234 ~~~~sp 239 (239)
..+|+|
T Consensus 427 ~p~wsp 432 (433)
T PRK04922 427 EPAWSP 432 (433)
T ss_pred CCccCC
Confidence 899987
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-14 Score=111.99 Aligned_cols=197 Identities=10% Similarity=0.191 Sum_probs=124.9
Q ss_pred CCEEEEeeCCC-cc---eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEE-EEeeCCCeEEEEeCCCCCcee--
Q psy11036 7 ILIVALWDIPS-EA---QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIV-ISGSYDKTVNVYDTRSPDPVM-- 79 (239)
Q Consensus 7 dg~i~vwd~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~~~~~-- 79 (239)
++.|.+|++++ +. .+..+.+. ....+++++| +++++ ++...++.|.+||+.+...+.
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~~~---------------~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIEGL---------------EGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred CCeEEEEEECCCCCCCCceeeccCC---------------CcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 68899998864 22 22222222 3466789999 66666 555567999999997633221
Q ss_pred -----eecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCC-C--eEEEEEeccC------CceEEEEEcCCCCEEEE
Q psy11036 80 -----SVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGG-G--KLLHKFTCHH------KTVTSLCLASGGKRLIS 143 (239)
Q Consensus 80 -----~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~-~--~~~~~~~~~~------~~i~~i~~~~~~~~l~~ 143 (239)
..........++|+|++++++++. ++.|.+|+++.. + +.+..+..+. .....+.++|+++++++
T Consensus 165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv 244 (330)
T PRK11028 165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA 244 (330)
T ss_pred CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence 122344567899999999998887 699999999732 2 2333333211 12336889999999888
Q ss_pred Eec-CCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC-CceEEEEEcc--
Q psy11036 144 ASL-DHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL-DHHAKIYEMV-- 218 (239)
Q Consensus 144 ~~~-d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-d~~i~iwd~~-- 218 (239)
+.. ++.|.+|+++ .... .+.+..... ......+.++|+|++|+++.. +++|.+|++.
T Consensus 245 ~~~~~~~I~v~~i~~~~~~-----------------~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 245 CDRTASLISVFSVSEDGSV-----------------LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred ecCCCCeEEEEEEeCCCCe-----------------EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 854 6889999886 1100 011111111 123457899999999987765 8999999874
Q ss_pred CCe--eeEEecCCCCeeeeEe
Q psy11036 219 NFS--PVHTLDYPSPVLSIDV 237 (239)
Q Consensus 219 ~~~--~~~~~~~~~~v~~~~~ 237 (239)
++. .+.++.......+++|
T Consensus 307 ~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 307 TGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred CCcEEEccccccCCCceEEEE
Confidence 343 3445544445555554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-14 Score=115.78 Aligned_cols=192 Identities=16% Similarity=0.117 Sum_probs=121.5
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEE-EeeCCCeEEEEe--CCCCCceeee-cC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVI-SGSYDKTVNVYD--TRSPDPVMSV-NH 83 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg~v~vw~--~~~~~~~~~~-~~ 83 (239)
..|++||+.+++... +.... +.+...+|+| +++.|+ +.+.+|...+|. +.++. ...+ .+
T Consensus 220 ~~I~~~dl~~g~~~~-l~~~~--------------g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~ 282 (427)
T PRK02889 220 PVVYVHDLATGRRRV-VANFK--------------GSNSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQS 282 (427)
T ss_pred cEEEEEECCCCCEEE-eecCC--------------CCccceEECC-CCCEEEEEEccCCCceEEEEECCCCC-cEECCCC
Confidence 469999998886543 33233 5566899999 666554 667788766665 44444 3334 44
Q ss_pred CCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCC---eEEEEEcccc
Q psy11036 84 GSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH---HAKIYEMTLK 158 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~i~d~~~~ 158 (239)
........|+|+|+.++..+ ++...+|.+...+.....+..........+|+|+|++|+..+.++ .|.+||+.
T Consensus 283 ~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~-- 360 (427)
T PRK02889 283 SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLA-- 360 (427)
T ss_pred CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECC--
Confidence 44566788999999888666 366677765422322333332333345688999999998777654 46666665
Q ss_pred eEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc---eEEEEEccCCeeeEEec-CCCCeee
Q psy11036 159 TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH---HAKIYEMVNFSPVHTLD-YPSPVLS 234 (239)
Q Consensus 159 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~-~~~~v~~ 234 (239)
+ ++.. .+.. ........|+|||+.|+.++.++ .+.+.++ +++....+. ..+.+..
T Consensus 361 -----------------~-g~~~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~ 419 (427)
T PRK02889 361 -----------------T-GQVT-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVRE 419 (427)
T ss_pred -----------------C-CCeE-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCC
Confidence 2 1111 1111 12235679999999988776543 3555566 566666665 5577888
Q ss_pred eEecC
Q psy11036 235 IDVSM 239 (239)
Q Consensus 235 ~~~sp 239 (239)
.+|+|
T Consensus 420 p~wsp 424 (427)
T PRK02889 420 PSWGP 424 (427)
T ss_pred CccCC
Confidence 99987
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.7e-16 Score=119.51 Aligned_cols=161 Identities=17% Similarity=0.235 Sum_probs=125.5
Q ss_pred CCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEE
Q psy11036 55 SDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSL 132 (239)
Q Consensus 55 ~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i 132 (239)
.+.++.++.||.+.+.+- .++....+ .|.+.+.+-.|+|+|.-|++++ ||.|++|.- ++....++.....+|.|+
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr--sGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR--SGMLRSTVVQNEESIRCA 151 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec--cchHHHHHhhcCceeEEE
Confidence 457888899999998873 45555555 6999999999999999999988 899999986 455555555567799999
Q ss_pred EEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceE
Q psy11036 133 CLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 212 (239)
Q Consensus 133 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i 212 (239)
+|.|+...++-+- .+.+.|=.+. ....+...+.|.+-|.++.|++..+++++|++|-..
T Consensus 152 ~W~p~S~~vl~c~-g~h~~IKpL~--------------------~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kf 210 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQ-GGHISIKPLA--------------------ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRF 210 (737)
T ss_pred EECCCCCceEEec-CCeEEEeecc--------------------cccceeEEeccCcEEEEeecCccccceeecCCceeE
Confidence 9999987766653 3445444433 233445568899999999999999999999999999
Q ss_pred EEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 213 KIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
+|||-.......+-.++-+|++++|+|
T Consensus 211 KvWD~~G~~Lf~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 211 KIWDAQGANLFTSAAEEYAITSVAFNP 237 (737)
T ss_pred EeecccCcccccCChhccceeeeeecc
Confidence 999975444444445888999999987
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-14 Score=115.76 Aligned_cols=193 Identities=15% Similarity=0.100 Sum_probs=126.2
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC---CCeEEEEeCCCCCceeeecC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY---DKTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~v~vw~~~~~~~~~~~~~ 83 (239)
...|++||.+... .+.+..+. ..+.+.+|+| +++.|+..+. +..|.+||+.+++.......
T Consensus 183 ~~~l~i~D~~g~~-~~~lt~~~--------------~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~ 246 (433)
T PRK04922 183 RYALQVADSDGYN-PQTILRSA--------------EPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVASF 246 (433)
T ss_pred eEEEEEECCCCCC-ceEeecCC--------------CccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEeccC
Confidence 3578999985443 44555555 7899999999 7877776653 34799999988775443344
Q ss_pred CCCEEEEEEecCCcEEEEe-C-CC--cEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec-CCe--EEEEEcc
Q psy11036 84 GSPVESVLCLPSGGIFVTG-G-GL--DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL-DHH--AKIYEMT 156 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~-~-~~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~--i~i~d~~ 156 (239)
.+...+.+|+|+|+.++.. + ++ .|.+||+. .++ ...+..+.......+|+|||+.|+..+. ++. |.++|+.
T Consensus 247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~-~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG-SRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred CCCccCceECCCCCEEEEEEeCCCCceEEEEECC-CCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 5556688999999987654 3 33 59999997 444 3445555555677899999998887764 444 3333333
Q ss_pred cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc---eEEEEEccCCeeeEEecCCCCee
Q psy11036 157 LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH---HAKIYEMVNFSPVHTLDYPSPVL 233 (239)
Q Consensus 157 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~~~v~ 233 (239)
+ ++. ..+..+.......+|+|||++|+..+.++ .|.+||+.+++.. .+.......
T Consensus 325 -------------------~-g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~ 382 (433)
T PRK04922 325 -------------------G-GSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDE 382 (433)
T ss_pred -------------------C-CCe-EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCC
Confidence 2 111 11111223344689999999988765432 6999999887654 444333445
Q ss_pred eeEecC
Q psy11036 234 SIDVSM 239 (239)
Q Consensus 234 ~~~~sp 239 (239)
+.+|+|
T Consensus 383 ~p~~sp 388 (433)
T PRK04922 383 SPSFAP 388 (433)
T ss_pred CceECC
Confidence 566765
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-15 Score=110.26 Aligned_cols=174 Identities=17% Similarity=0.148 Sum_probs=128.8
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee--cCCCCEEEEEEecC-CcEEEEeCCCcEEEEEccCCCe--
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--NHGSPVESVLCLPS-GGIFVTGGGLDVCIWDMLGGGK-- 117 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~~~i~~~d~~~~~~-- 117 (239)
..+..++|++ .-..++++..|-.|++|+-.. ++...+ .....|+|++|-|. ++.++++..+.|.+|....+..
T Consensus 99 ~dlr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc
Confidence 4688999999 677888999999999999776 444445 35678999999994 5677777788899998753211
Q ss_pred -E----------EEEEeccCCceEEEEEcCCCCEEEEEec-CCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEe
Q psy11036 118 -L----------LHKFTCHHKTVTSLCLASGGKRLISASL-DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFT 185 (239)
Q Consensus 118 -~----------~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 185 (239)
. +.+-++| .+|+++.|++||..+++++. |..|.|||.+. ....++. .
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt------------------g~~~pL~--~ 235 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT------------------GQKIPLI--P 235 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC------------------CCccccc--c
Confidence 1 1111233 68999999999999998875 56788888771 1122222 1
Q ss_pred cccCcEEEEEEccCCCeEEEEcCCceEEEEE-ccCCeeeEEecCCCCeeeeEecC
Q psy11036 186 CHHKTVTSLCLASGGKRLISASLDHHAKIYE-MVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 186 ~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
-.-+.++-+.|||||.+|+.+.-|+..++|. -.+.....-.-.++.|...+|+|
T Consensus 236 ~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp 290 (445)
T KOG2139|consen 236 KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP 290 (445)
T ss_pred cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecC
Confidence 2246788999999999999999999999994 44555555555666888888887
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-14 Score=106.09 Aligned_cols=169 Identities=17% Similarity=0.193 Sum_probs=120.4
Q ss_pred CCCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC----Cc
Q psy11036 2 SHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP----DP 77 (239)
Q Consensus 2 s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~----~~ 77 (239)
.-...|-.|++||-.+ .....++.... ..|+|++|-|.....|+.|...| |.+|..... ..
T Consensus 114 ava~nddvVriy~kss-t~pt~Lks~sQ-------------rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 114 AVATNDDVVRIYDKSS-TCPTKLKSVSQ-------------RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRN 178 (445)
T ss_pred hhhccCcEEEEeccCC-CCCceecchhh-------------cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccc
Confidence 3456788999999766 44445544321 78999999998788888888755 889986421 11
Q ss_pred e--------eee--cCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEe
Q psy11036 78 V--------MSV--NHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS 145 (239)
Q Consensus 78 ~--------~~~--~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 145 (239)
+ ..+ +...+|+.+.|.++|..+++++ +..|.+||.. .+..+-......+.++-+.|+||+.+|.++.
T Consensus 179 ~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd-tg~~~pL~~~glgg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPD-TGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred cccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCC-CCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence 1 111 2336899999999999999998 6899999998 5544443334457788999999999999999
Q ss_pred cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEE
Q psy11036 146 LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA 206 (239)
Q Consensus 146 ~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 206 (239)
-|+..++|+... ......- ..-.+.|...+|+|+|++|+-+
T Consensus 258 ~davfrlw~e~q-------------------~wt~erw-~lgsgrvqtacWspcGsfLLf~ 298 (445)
T KOG2139|consen 258 CDAVFRLWQENQ-------------------SWTKERW-ILGSGRVQTACWSPCGSFLLFA 298 (445)
T ss_pred ccceeeeehhcc-------------------cceecce-eccCCceeeeeecCCCCEEEEE
Confidence 999999996540 0111111 1124578889999999876543
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-16 Score=122.57 Aligned_cols=168 Identities=19% Similarity=0.263 Sum_probs=129.8
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
..|..++|-| +|..|+.+. +..+.+||...|....++ +|+..|.+++|+.+|+.+++|+ |..|.+|...-.+ +-
T Consensus 13 hci~d~afkP-DGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~L 88 (1081)
T KOG1538|consen 13 HCINDIAFKP-DGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--IL 88 (1081)
T ss_pred cchheeEECC-CCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--ee
Confidence 3689999999 555554443 347999999999999988 7999999999999999999999 8999999875333 22
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG 200 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~ 200 (239)
.. .|...|.|+.|+|-...|++++-.. .-+|... .+.+...+ ....+.+.+|..||
T Consensus 89 kY-SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~---------------------qK~V~K~k-ss~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 89 KY-SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPE---------------------QKSVSKHK-SSSRIICCSWTNDG 144 (1081)
T ss_pred ee-ccCCeeeEeecCchHHHhhhcchhh-ccccChh---------------------hhhHHhhh-hheeEEEeeecCCC
Confidence 22 5999999999999999999987543 4566655 11111111 24568889999999
Q ss_pred CeEEEEcCCceEEEEEccCCeeeEEec----CCCCeeeeEecC
Q psy11036 201 KRLISASLDHHAKIYEMVNFSPVHTLD----YPSPVLSIDVSM 239 (239)
Q Consensus 201 ~~l~s~s~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp 239 (239)
++|+-|-.||+|.|=+ +++++-..++ ..++|.+++|+|
T Consensus 145 qylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p 186 (1081)
T KOG1538|consen 145 QYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNP 186 (1081)
T ss_pred cEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecC
Confidence 9999999999999875 4666655555 456999999997
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-14 Score=111.75 Aligned_cols=195 Identities=11% Similarity=0.066 Sum_probs=125.5
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee---CCCeEEEEeCCCCCceeeecC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS---YDKTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~v~vw~~~~~~~~~~~~~ 83 (239)
...|+++|.+.... +.+..+. ..+...+|+| +++.|+..+ .+..+.+|++.+++.......
T Consensus 178 ~~~l~~~d~dg~~~-~~lt~~~--------------~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~ 241 (429)
T PRK03629 178 PYELRVSDYDGYNQ-FVVHRSP--------------QPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASF 241 (429)
T ss_pred ceeEEEEcCCCCCC-EEeecCC--------------CceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCC
Confidence 35788888865543 3344454 7899999999 677776543 245799999988865443344
Q ss_pred CCCEEEEEEecCCcEEEEeC--CC--cEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecC-CeEEEEEcccc
Q psy11036 84 GSPVESVLCLPSGGIFVTGG--GL--DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD-HHAKIYEMTLK 158 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~--~~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~~i~i~d~~~~ 158 (239)
.+.+....|+|+|+.|+... ++ .|.+||+. +++. ..+..+...+....|+|||+.|+..+.+ +...||.++
T Consensus 242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~-tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d-- 317 (429)
T PRK03629 242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVN-- 317 (429)
T ss_pred CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC-CCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEE--
Confidence 45566789999999888653 34 58889987 4443 4444455567889999999988877654 444444322
Q ss_pred eEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCC---ceEEEEEccCCeeeEEecCCCCeeee
Q psy11036 159 TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD---HHAKIYEMVNFSPVHTLDYPSPVLSI 235 (239)
Q Consensus 159 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~~~v~~~ 235 (239)
+.+ ++. ..+..+........|+|||++|+..+.+ ..|.+||+.+++.. .+.......+.
T Consensus 318 ---------------~~~-g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p 379 (429)
T PRK03629 318 ---------------ING-GAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETP 379 (429)
T ss_pred ---------------CCC-CCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCc
Confidence 222 111 1222233345578899999998776543 46889999887643 33322233455
Q ss_pred EecC
Q psy11036 236 DVSM 239 (239)
Q Consensus 236 ~~sp 239 (239)
.|+|
T Consensus 380 ~~Sp 383 (429)
T PRK03629 380 SIAP 383 (429)
T ss_pred eECC
Confidence 6665
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-13 Score=104.16 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=134.2
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
..+|.|.+.|..+.+.+.++.... .....+.++| +++++++++.||.|.++|+.+.+.+.++...
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~~~--------------~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G 77 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPTGG--------------APHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVG 77 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE-ST--------------TEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-S
T ss_pred cCCCEEEEEECCCCeEEEEEcCCC--------------CceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecC
Confidence 457999999999999999998764 4445678899 7888888899999999999999999999877
Q ss_pred CCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEecc-------CCceEEEEEcCCCCEEEEEecC-CeEEEEE
Q psy11036 85 SPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCH-------HKTVTSLCLASGGKRLISASLD-HHAKIYE 154 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~d-~~i~i~d 154 (239)
.....++++++|++++++. .+.+.++|.+ +.++++.+... ...+..+..+|....++..-.| +.|.+.|
T Consensus 78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp SEEEEEEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCceeEeccc-cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 8889999999999999988 6999999998 78888877643 2356778888888766655554 7777777
Q ss_pred cccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEE-cCCceEEEEEccCCeeeEEec
Q psy11036 155 MTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA-SLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.. ....+...............|+|++++++.+ ..+..|-++|.++++.+..+.
T Consensus 157 y~-------------------d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 157 YS-------------------DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp TT-------------------TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred ec-------------------cccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 65 1112221222234556788999999987664 567799999999998877664
|
... |
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-14 Score=108.84 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=97.2
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCC------CCCceeee--cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEcc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTR------SPDPVMSV--NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDML 113 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~------~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~ 113 (239)
+.|.++.|+. ++++|++|+.|..+++|++. +.+++... .|...|.|++|....+++++|+ +++|.+.|++
T Consensus 57 GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 57 GCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE 135 (609)
T ss_pred cccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc
Confidence 9999999999 79999999999999999975 45666666 3668999999999999999998 7999999998
Q ss_pred CCCeEEEEEeccC---CceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 114 GGGKLLHKFTCHH---KTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 114 ~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
+.+.+..+. |. +.|..+..+|..+.|++.+.++.|.+||.+
T Consensus 136 -t~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 136 -TKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred -cceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEecc
Confidence 777666664 43 489999999999999999999999999997
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-16 Score=126.96 Aligned_cols=92 Identities=18% Similarity=0.344 Sum_probs=82.6
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N 82 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~ 82 (239)
-+.|..|+||.++++.++...++|. +.|+.++.+. +..++++++.|..|++|.+..+.++..+ +
T Consensus 208 gsdd~lvKiwS~et~~~lAs~rGhs--------------~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~~~pvsvLrg 272 (1113)
T KOG0644|consen 208 GSDDRLVKIWSMETARCLASCRGHS--------------GDITDLAVSS-NNTMIAAASNDKVIRVWRLPDGAPVSVLRG 272 (1113)
T ss_pred cCccceeeeeeccchhhhccCCCCc--------------cccchhccch-hhhhhhhcccCceEEEEecCCCchHHHHhc
Confidence 3567899999999999999999999 9999999998 7889999999999999999999999888 8
Q ss_pred CCCCEEEEEEecCCcEEEEeCCCcEEEEEcc
Q psy11036 83 HGSPVESVLCLPSGGIFVTGGGLDVCIWDML 113 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~ 113 (239)
|.+.|++++|+|-. .++.||++++||.+
T Consensus 273 htgavtaiafsP~~---sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 273 HTGAVTAIAFSPRA---SSSDDGTCRIWDAR 300 (1113)
T ss_pred cccceeeeccCccc---cCCCCCceEecccc
Confidence 99999999999965 33347999999876
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-16 Score=112.43 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=133.8
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
..++.|.+|++...+-...+.... +++.++.|+|++.++|.+...|-.|.+|.+.+.+....--.+
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~--------------agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK 133 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQ--------------AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK 133 (447)
T ss_pred eccceEEEEEeecceeEEEeccCC--------------CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccc
Confidence 357899999998888888888887 899999999954477888888999999999987765443345
Q ss_pred CCEEEEEEecCCcEEEEeC--C--CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceE
Q psy11036 85 SPVESVLCLPSGGIFVTGG--G--LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTV 160 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~--~--~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 160 (239)
..+..++|+|+|++.+..+ | ..+.+..-. .-..+..+.-..-..+.+.|+|||..|++- |.-
T Consensus 134 ~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~-~W~ll~~f~~dT~DltgieWsPdg~~laVw---------d~~---- 199 (447)
T KOG4497|consen 134 TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK-AWILLKEFKLDTIDLTGIEWSPDGNWLAVW---------DNV---- 199 (447)
T ss_pred cCceeEEECCCCceeeeeecccHHHHHHHHhhH-HHHHHHhcCCCcccccCceECCCCcEEEEe---------cch----
Confidence 5679999999999999887 3 223332222 334455566666678899999999887653 321
Q ss_pred eeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCCe
Q psy11036 161 SSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPV 232 (239)
Q Consensus 161 ~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v 232 (239)
-+.+ +..++ -.-.+..++|+|.+++|+.|+.|+.+||.+--+.++..++-|...+
T Consensus 200 ---------------Leyk-v~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~ 254 (447)
T KOG4497|consen 200 ---------------LEYK-VYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSY 254 (447)
T ss_pred ---------------hhhe-eeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhc
Confidence 0001 00111 1246888999999999999999999999988888887776654433
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.9e-14 Score=100.75 Aligned_cols=155 Identities=14% Similarity=0.151 Sum_probs=119.1
Q ss_pred CeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcC--CCCEEE
Q psy11036 65 KTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS--GGKRLI 142 (239)
Q Consensus 65 g~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~ 142 (239)
..|.|||-...+++..+....+|.++.+.+ ..+++.-.+.|.+|......+.++.+.....|=--++..| +...||
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence 479999977788888888999999999985 4788888999999999766666666654333322333444 334455
Q ss_pred E-EecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCce-EEEEEccCC
Q psy11036 143 S-ASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHH-AKIYEMVNF 220 (239)
Q Consensus 143 ~-~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~-i~iwd~~~~ 220 (239)
. |-.-|.|.|-|+. .+.......+.+|.+.|.+++.+-+|..+||+|..|+ |||||..+|
T Consensus 153 fPg~k~GqvQi~dL~------------------~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g 214 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLA------------------STKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG 214 (346)
T ss_pred cCCCccceEEEEEhh------------------hcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC
Confidence 4 3456888888877 1111134566899999999999999999999999997 799999999
Q ss_pred eeeEEec---CCCCeeeeEecC
Q psy11036 221 SPVHTLD---YPSPVLSIDVSM 239 (239)
Q Consensus 221 ~~~~~~~---~~~~v~~~~~sp 239 (239)
++++++. ....|.+|+|||
T Consensus 215 ~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 215 TLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred cEeeeeecCCchheEEEEEeCC
Confidence 9999998 456899999997
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-13 Score=107.65 Aligned_cols=195 Identities=12% Similarity=0.061 Sum_probs=117.6
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee-CCC----eEEEEeCCCC---Ccee
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS-YDK----TVNVYDTRSP---DPVM 79 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg----~v~vw~~~~~---~~~~ 79 (239)
..|++.++.+++..+.. ... +.....+|+| +++.|+..+ .+| .+..|++..+ +...
T Consensus 211 ~~I~~~~l~~g~~~~lt-~~~--------------g~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~ 274 (428)
T PRK01029 211 PKIFLGSLENPAGKKIL-ALQ--------------GNQLMPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR 274 (428)
T ss_pred ceEEEEECCCCCceEee-cCC--------------CCccceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceE
Confidence 35666677666543322 222 4455789999 676665433 223 3445776653 3333
Q ss_pred eecC-CCCEEEEEEecCCcEEEEeC--CCcEEEE--EccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecC---CeEE
Q psy11036 80 SVNH-GSPVESVLCLPSGGIFVTGG--GLDVCIW--DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD---HHAK 151 (239)
Q Consensus 80 ~~~~-~~~v~~~~~~~~~~~l~~~~--~~~i~~~--d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~ 151 (239)
.... .......+|+|+|+.|+..+ ++...+| ++...+.....+..+...+....|+|||+.|+..+.+ ..|.
T Consensus 275 lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~ 354 (428)
T PRK01029 275 LLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQIC 354 (428)
T ss_pred eecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEE
Confidence 3322 23446789999999887665 4655555 4432223344455455667789999999998876643 2455
Q ss_pred EEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC---CceEEEEEccCCeeeEEecC
Q psy11036 152 IYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL---DHHAKIYEMVNFSPVHTLDY 228 (239)
Q Consensus 152 i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~ 228 (239)
+||+. + ++.. .+......+....|+|||+.|+..+. ...|+++|+.+++.......
T Consensus 355 v~dl~-------------------~-g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 355 VYDLA-------------------T-GRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG 413 (428)
T ss_pred EEECC-------------------C-CCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 55554 2 2221 22222334567899999998764432 45788999988776555555
Q ss_pred CCCeeeeEecC
Q psy11036 229 PSPVLSIDVSM 239 (239)
Q Consensus 229 ~~~v~~~~~sp 239 (239)
.+.+...+|+|
T Consensus 414 ~g~~~~p~Ws~ 424 (428)
T PRK01029 414 SGEKRFPSWGA 424 (428)
T ss_pred CCcccCceecC
Confidence 66677888887
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-13 Score=108.99 Aligned_cols=177 Identities=14% Similarity=0.133 Sum_probs=119.5
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC---CeEEEEeCCCCCceeeecC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD---KTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~v~vw~~~~~~~~~~~~~ 83 (239)
...|+++|..... .+.+..+. ..+...+|+| +++.|+....+ ..|++||+.+++......+
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~--------------~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~ 232 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSR--------------EPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASF 232 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCC--------------CceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC
Confidence 4567888875443 34444454 6788999999 78877766543 4799999998866544455
Q ss_pred CCCEEEEEEecCCcEEEEeC--C--CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecC-C--eEEEEEcc
Q psy11036 84 GSPVESVLCLPSGGIFVTGG--G--LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD-H--HAKIYEMT 156 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~--~--~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~--~i~i~d~~ 156 (239)
...+.+++|+|+++.++... + ..|.+||+. .++ ...+..+........|+|+|+.|+..+.. + .|.++|+.
T Consensus 233 ~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~-~~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 233 PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD-GKQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred CCCccceEECCCCCEEEEEECCCCCccEEEEECC-CCC-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 66677899999998776543 3 458888886 333 34444455555678899999988776543 3 34444443
Q ss_pred cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc---eEEEEEccCCee
Q psy11036 157 LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH---HAKIYEMVNFSP 222 (239)
Q Consensus 157 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~---~i~iwd~~~~~~ 222 (239)
+ .+ ...+..+...+....|+|+|++++.++.++ .|.+||+.++..
T Consensus 311 -------------------~-~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 311 -------------------G-GE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred -------------------C-CC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 2 11 122233345567789999999998887765 789999887543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=115.96 Aligned_cols=196 Identities=15% Similarity=0.096 Sum_probs=140.1
Q ss_pred CCCCCCCEEEEeeCCCcce-eeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc---
Q psy11036 2 SHDLPILIVALWDIPSEAQ-VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP--- 77 (239)
Q Consensus 2 s~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~--- 77 (239)
...+.||.|..|+++.-.. .......... ....-......+++++|.+.+.+.++.|+..|.|..-+-...+.
T Consensus 309 ~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~---~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 309 FSLSSDGSICSWDTDMLSLPVEGLLLESKK---HKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred EEEecCCcEeeeeccccccchhhccccccc---ccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence 3456799999998765322 1111110000 00000011157899999998889999999999988744332221
Q ss_pred -----eeee-cCCCCEEEEEEecCCc-EEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCC-CEEEEEecCCe
Q psy11036 78 -----VMSV-NHGSPVESVLCLPSGG-IFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHH 149 (239)
Q Consensus 78 -----~~~~-~~~~~v~~~~~~~~~~-~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~ 149 (239)
...+ .|.++|.++.++|-+. .+.+++|-++++|.......++..+..+...+++++|||.. ..|+++..||.
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~ 465 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN 465 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence 1122 4889999999999655 55566699999999875566777777788889999999955 67888889999
Q ss_pred EEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 150 AKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 150 i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
+.+||+. .....++.+...+......+.|+++|+.|++|...|++.+|++.
T Consensus 466 l~iWDLl------------------~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 466 LDIWDLL------------------QDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred eehhhhh------------------ccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 9999998 22345555555556677888899999999999999999999985
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-13 Score=104.56 Aligned_cols=216 Identities=15% Similarity=0.128 Sum_probs=137.3
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEe-eCCCeEEEEeCCCCCceeeec--
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISG-SYDKTVNVYDTRSPDPVMSVN-- 82 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~v~vw~~~~~~~~~~~~-- 82 (239)
+||.|.++|+.+++.+.+++.. ....++++++ ++++++++ ..++.+.++|.++.+++..+.
T Consensus 56 rdg~vsviD~~~~~~v~~i~~G---------------~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 56 RDGTVSVIDLATGKVVATIKVG---------------GNPRGIAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp TTSEEEEEETTSSSEEEEEE-S---------------SEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred CCCeEEEEECCcccEEEEEecC---------------CCcceEEEcC-CCCEEEEEecCCCceeEeccccccceeecccc
Confidence 4899999999999999999887 4577999999 77777765 468999999999999888773
Q ss_pred ------CCCCEEEEEEecCCcEEEEe-CC-CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEE-ecCCeEEEE
Q psy11036 83 ------HGSPVESVLCLPSGGIFVTG-GG-LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA-SLDHHAKIY 153 (239)
Q Consensus 83 ------~~~~v~~~~~~~~~~~l~~~-~~-~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~ 153 (239)
...++.++..+|....+++. .+ +.|.+.|......................|+|++++++++ ..++.|-++
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi 199 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI 199 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEE
Confidence 23467888888888755544 45 8888888764433333333345567889999999987664 457788899
Q ss_pred Ecc-cceEeeee-c---------------ce-------------------eEEEEEccCCCEEEEEEecccCcEEEEEEc
Q psy11036 154 EMT-LKTVSSFT-G---------------GL-------------------DVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 197 (239)
Q Consensus 154 d~~-~~~~~~~~-~---------------~~-------------------~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s 197 (239)
|.+ .+.+..+. | .+ .+.+||... .+.+..+.....+ .-+..+
T Consensus 200 D~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~-wkvv~~I~~~G~g-lFi~th 277 (369)
T PF02239_consen 200 DTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA-WKVVKTIPTQGGG-LFIKTH 277 (369)
T ss_dssp ETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB-TSEEEEEE-SSSS---EE--
T ss_pred eeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc-CeEEEEEECCCCc-ceeecC
Confidence 988 43333220 0 00 011222222 4456666665555 677889
Q ss_pred cCCCeEEEE----cCCceEEEEEccCCeeeEEecCC--CCeeeeEecC
Q psy11036 198 SGGKRLISA----SLDHHAKIYEMVNFSPVHTLDYP--SPVLSIDVSM 239 (239)
Q Consensus 198 ~~~~~l~s~----s~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp 239 (239)
|+++++... .....|.++|.++.+.+.++... ..+..+.|+|
T Consensus 278 P~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 278 PDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP 325 (369)
T ss_dssp TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T
T ss_pred CCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC
Confidence 999999887 45689999999999988888732 3488888775
|
... |
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-14 Score=118.24 Aligned_cols=193 Identities=18% Similarity=0.208 Sum_probs=137.7
Q ss_pred eeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-------ceeee-cCC
Q psy11036 13 WDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD-------PVMSV-NHG 84 (239)
Q Consensus 13 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-------~~~~~-~~~ 84 (239)
|+. .|..+..+..|. ..+..++.++.++.++++|+.||+|++||.+.-. ...++ ...
T Consensus 1034 W~p-~G~lVAhL~Ehs--------------~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~ 1098 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHS--------------SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEG 1098 (1431)
T ss_pred CCc-cceEeehhhhcc--------------ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccC
Confidence 444 567777788887 8888999998566999999999999999986421 22233 267
Q ss_pred CCEEEEEEecCCcEEEEeC-CCcEEEEEccCC-Ce-----EEEEEecc-CCceEEE-EEcC-CCC-EEEEEecCCeEEEE
Q psy11036 85 SPVESVLCLPSGGIFVTGG-GLDVCIWDMLGG-GK-----LLHKFTCH-HKTVTSL-CLAS-GGK-RLISASLDHHAKIY 153 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~-~~-----~~~~~~~~-~~~i~~i-~~~~-~~~-~l~~~~~d~~i~i~ 153 (239)
.++.++.+.+.+..+|+++ ||.|.+.++... .. .......+ .+.+.++ ++.. .+. .++.+..-+.|..|
T Consensus 1099 sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~ 1178 (1431)
T KOG1240|consen 1099 SRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSW 1178 (1431)
T ss_pred CceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEe
Confidence 8899999999999999998 899999998731 11 11111112 2233333 3332 223 57777778888888
Q ss_pred Ecc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCC--C
Q psy11036 154 EMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYP--S 230 (239)
Q Consensus 154 d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--~ 230 (239)
|++ .....++ ......+.|++++.+|.+++++.|...|.+.+||++-+.++.++.++ .
T Consensus 1179 D~r~~~~~w~l-------------------k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~ 1239 (1431)
T KOG1240|consen 1179 DTRMRHDAWRL-------------------KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARA 1239 (1431)
T ss_pred cchhhhhHHhh-------------------hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccC
Confidence 887 2211111 11334578999999999999999999999999999999999988854 4
Q ss_pred CeeeeEecC
Q psy11036 231 PVLSIDVSM 239 (239)
Q Consensus 231 ~v~~~~~sp 239 (239)
+++.++.+|
T Consensus 1240 ~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1240 PIRHVWLCP 1248 (1431)
T ss_pred CcceEEeec
Confidence 777777665
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-15 Score=115.13 Aligned_cols=101 Identities=15% Similarity=0.243 Sum_probs=85.4
Q ss_pred Cceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy11036 76 DPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIY 153 (239)
Q Consensus 76 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 153 (239)
.++..+ -.++.|...+|+|||++||+.+ ||.++|+|.. ..+++..++..-+...|++|+|||++|++|++|..|.||
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-t~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD-TQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeecc-HHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEE
Confidence 344444 2456899999999999999999 8999999998 777888888888999999999999999999999999999
Q ss_pred EcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEc
Q psy11036 154 EMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 197 (239)
Q Consensus 154 d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s 197 (239)
.+. ..+.+..-++|.++|..++|.
T Consensus 360 Sf~--------------------erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 360 SFE--------------------ERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred Eec--------------------cceEEEeccccccceeeEeec
Confidence 998 456666667777777777776
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-13 Score=103.42 Aligned_cols=162 Identities=19% Similarity=0.243 Sum_probs=131.7
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCceeeec----CCCCEEEEEEe------c--------------CCcEEEEeC-CCcEE
Q psy11036 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVN----HGSPVESVLCL------P--------------SGGIFVTGG-GLDVC 108 (239)
Q Consensus 54 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~----~~~~v~~~~~~------~--------------~~~~l~~~~-~~~i~ 108 (239)
...+++....||.+++|++.+++....+. ..+..++..|. | +...++-|. .|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 56789999999999999999988776662 33444555542 1 223455555 69999
Q ss_pred EEEccCCCeEEEEEe--ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec
Q psy11036 109 IWDMLGGGKLLHKFT--CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC 186 (239)
Q Consensus 109 ~~d~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 186 (239)
+|+.. .++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+.. ..+..+..++
T Consensus 84 ~ys~~-~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~--------------------~~~~~~~~~~ 142 (541)
T KOG4547|consen 84 LYSVA-GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK--------------------EKVIIRIWKE 142 (541)
T ss_pred EEEec-CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc--------------------cceeeeeecc
Confidence 99998 777776665 688999999999999999999999999999988 4555666667
Q ss_pred ccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEec
Q psy11036 187 HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 187 h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s 238 (239)
....+.+++.+|||..|++++ +.|++||+++++.+..+. |.++|++++|-
T Consensus 143 ~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFT 193 (541)
T ss_pred CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEE
Confidence 777899999999999999986 589999999999999999 88999999883
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=112.89 Aligned_cols=131 Identities=21% Similarity=0.300 Sum_probs=107.1
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccC-------CCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLG-------GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIY 153 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 153 (239)
.|...++.++|+|....+++++ +|.+++|++.. .-+++.++.+|.++|.|+++.+++.++.+|+.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 3677888999999999999999 89999999932 235788999999999999999999999999999999999
Q ss_pred EcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCee
Q psy11036 154 EMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 154 d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
++... .--+|..........+.||...|+.+++|+....|++++.||+++.|+.....+
T Consensus 372 ~~p~n----------~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 372 NLPPN----------QDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred ccCCC----------CCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 87600 001111112234456789999999999999999999999999999999876666
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.7e-13 Score=105.45 Aligned_cols=190 Identities=15% Similarity=0.110 Sum_probs=122.0
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEE-EEeeCCC--eEEEEeCCCCCceeeecCC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIV-ISGSYDK--TVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg--~v~vw~~~~~~~~~~~~~~ 84 (239)
..|++||+.+++... +..+. +.+.+++|+| +++.| ++.+.++ .|.+|++.+++......+.
T Consensus 214 ~~i~v~d~~~g~~~~-~~~~~--------------~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 277 (417)
T TIGR02800 214 PEIYVQDLATGQREK-VASFP--------------GMNGAPAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP 277 (417)
T ss_pred cEEEEEECCCCCEEE-eecCC--------------CCccceEECC-CCCEEEEEECCCCCccEEEEECCCCCEEECCCCC
Confidence 579999998876543 33333 5567789999 56655 4555444 5888998877654433444
Q ss_pred CCEEEEEEecCCcEEEEeC--CC--cEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCC---eEEEEEccc
Q psy11036 85 SPVESVLCLPSGGIFVTGG--GL--DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH---HAKIYEMTL 157 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~--~~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~i~d~~~ 157 (239)
.......|+|+++.++..+ .+ .|.++|+. .++ ...+..+......+.|+|+|++++.++.++ .|.+||+.
T Consensus 278 ~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~-~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~- 354 (417)
T TIGR02800 278 GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD-GGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD- 354 (417)
T ss_pred CCCCCEEECCCCCEEEEEECCCCCceEEEEECC-CCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC-
Confidence 4455778999999887665 23 57777776 333 344444556677889999999999888765 56666665
Q ss_pred ceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc---eEEEEEccCCeeeEEec-CCCCee
Q psy11036 158 KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH---HAKIYEMVNFSPVHTLD-YPSPVL 233 (239)
Q Consensus 158 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~-~~~~v~ 233 (239)
+ +.. ..+... .......|+|||+.|+..+.++ .+++.+. +++....+. ..+.+.
T Consensus 355 ------------------~-~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~ 412 (417)
T TIGR02800 355 ------------------G-GGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVR 412 (417)
T ss_pred ------------------C-CCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcC
Confidence 1 111 111111 1234558999999888776543 4566554 455556665 355677
Q ss_pred eeEec
Q psy11036 234 SIDVS 238 (239)
Q Consensus 234 ~~~~s 238 (239)
.++|+
T Consensus 413 ~~~ws 417 (417)
T TIGR02800 413 EPAWS 417 (417)
T ss_pred CCCCC
Confidence 77774
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-13 Score=112.75 Aligned_cols=206 Identities=14% Similarity=0.131 Sum_probs=136.6
Q ss_pred CCCCCCCCEEEEeeCCCcc-------eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCC
Q psy11036 1 MSHDLPILIVALWDIPSEA-------QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTR 73 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 73 (239)
|.+.+.||+|++||...-. ...++.... ..+.++...+ +++.+|.++.||.|++.++.
T Consensus 1064 FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~--------------sr~~~vt~~~-~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1064 FVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEG--------------SRVEKVTMCG-NGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred EEEecCCceEEEeeehhhhcCcceeeeeEEEeccC--------------CceEEEEecc-CCCeEEEEcCCCeEEEEEcc
Confidence 5567889999999986421 222333223 7899999999 89999999999999999987
Q ss_pred CCCc-------eeee--cCCCCEEEEE-Eec-CCc-EEEEeC-CCcEEEEEccCCCeEEEEE--eccCCceEEEEEcCCC
Q psy11036 74 SPDP-------VMSV--NHGSPVESVL-CLP-SGG-IFVTGG-GLDVCIWDMLGGGKLLHKF--TCHHKTVTSLCLASGG 138 (239)
Q Consensus 74 ~~~~-------~~~~--~~~~~v~~~~-~~~-~~~-~l~~~~-~~~i~~~d~~~~~~~~~~~--~~~~~~i~~i~~~~~~ 138 (239)
.... .+.. ...+.+..+. +.. ... .++.+. -+.|..||++ ......++ ....+.|++++.+|.+
T Consensus 1129 ~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r-~~~~~w~lk~~~~hG~vTSi~idp~~ 1207 (1431)
T KOG1240|consen 1129 HYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR-MRHDAWRLKNQLRHGLVTSIVIDPWC 1207 (1431)
T ss_pred ccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch-hhhhHHhhhcCccccceeEEEecCCc
Confidence 5211 1111 2334454443 322 233 555555 4889999998 33333222 2345789999999999
Q ss_pred CEEEEEecCCeEEEEEcc-cceEeee----------------------------ecceeEEEEEccCCCEEEEEEec---
Q psy11036 139 KRLISASLDHHAKIYEMT-LKTVSSF----------------------------TGGLDVCIWDMLGGGKLLHKFTC--- 186 (239)
Q Consensus 139 ~~l~~~~~d~~i~i~d~~-~~~~~~~----------------------------~~~~~i~~~d~~~~~~~~~~~~~--- 186 (239)
.+++.|+..|.+.+||++ ...+.+. ++.+.+.+|++.++ .....+-.
T Consensus 1208 ~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g-~~~~vl~~s~~ 1286 (1431)
T KOG1240|consen 1208 NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG-LRQTVLWASDG 1286 (1431)
T ss_pred eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC-cceEEEEcCCC
Confidence 999999999999999999 4444333 24566999998875 22222211
Q ss_pred ----------------ccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeee
Q psy11036 187 ----------------HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPV 223 (239)
Q Consensus 187 ----------------h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~ 223 (239)
+.-......+..-+.++.+|+.|..||.||....+..
T Consensus 1287 ~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1287 APILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 1111222334445678999999999999998765443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.8e-13 Score=106.05 Aligned_cols=191 Identities=16% Similarity=0.132 Sum_probs=114.9
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEE-EEeeCCCe--EEEEeCCCCCceeeecCC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIV-ISGSYDKT--VNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~--v~vw~~~~~~~~~~~~~~ 84 (239)
..|++||+.+++... +.... +.....+|+| +++.| ++.+.++. |.++|+.+++......+.
T Consensus 242 ~~L~~~dl~tg~~~~-lt~~~--------------g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~ 305 (448)
T PRK04792 242 AEIFVQDIYTQVREK-VTSFP--------------GINGAPRFSP-DGKKLALVLSKDGQPEIYVVDIATKALTRITRHR 305 (448)
T ss_pred cEEEEEECCCCCeEE-ecCCC--------------CCcCCeeECC-CCCEEEEEEeCCCCeEEEEEECCCCCeEECccCC
Confidence 368888887776432 22212 3344789999 56655 45566664 777888877654433445
Q ss_pred CCEEEEEEecCCcEEEEeC--CCc--EEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecC-CeEEE--EEccc
Q psy11036 85 SPVESVLCLPSGGIFVTGG--GLD--VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD-HHAKI--YEMTL 157 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~--~~~--i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~~i~i--~d~~~ 157 (239)
.......|+|+++.++..+ ++. |.++|+. .++. ..+..........+|+|||++|+..+.+ +...| +|+.
T Consensus 306 ~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~- 382 (448)
T PRK04792 306 AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-SGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE- 382 (448)
T ss_pred CCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCE-EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECC-
Confidence 5567789999999887766 344 5556665 3433 3332222233457899999988876553 33333 3433
Q ss_pred ceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC-Cc--eEEEEEccCCeeeEEec-CCCCee
Q psy11036 158 KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL-DH--HAKIYEMVNFSPVHTLD-YPSPVL 233 (239)
Q Consensus 158 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~~-~~~~v~ 233 (239)
+. +. ..+... .......|+|||+.|+..+. ++ .+++++. +|+....+. ..+.+.
T Consensus 383 ------------------~g-~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~ 440 (448)
T PRK04792 383 ------------------TG-AM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVK 440 (448)
T ss_pred ------------------CC-Ce-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcC
Confidence 21 11 111111 11123479999998876554 33 4777776 566666666 456788
Q ss_pred eeEecC
Q psy11036 234 SIDVSM 239 (239)
Q Consensus 234 ~~~~sp 239 (239)
..+|+|
T Consensus 441 ~p~Wsp 446 (448)
T PRK04792 441 SPAWSP 446 (448)
T ss_pred CCccCC
Confidence 899987
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=102.53 Aligned_cols=185 Identities=17% Similarity=0.282 Sum_probs=146.4
Q ss_pred CCCCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEe------cC-------------CCCEEEEe
Q psy11036 1 MSHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVS------PV-------------SSDIVISG 61 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~-------------~~~~l~s~ 61 (239)
|+-+..||.+++||..+++....|..... -.+..++..|. |. +...++-|
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~-----------~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg 76 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIAS-----------LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG 76 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchh-----------ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee
Confidence 34456799999999999988777754210 00333444442 11 34567888
Q ss_pred eCCCeEEEEeCCCCCceeee---cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCC
Q psy11036 62 SYDKTVNVYDTRSPDPVMSV---NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG 137 (239)
Q Consensus 62 ~~dg~v~vw~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~ 137 (239)
...|.|.+|++..++....+ .|.+.|.++.++.+-..+.+++ |..+..|+.. ....+...+.....+.+++.+||
T Consensus 77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeeeeccCCCccceEEEcCC
Confidence 89999999999999888777 4899999999999888999888 7999999998 88889999988899999999999
Q ss_pred CCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC-----CCeEEEE-cCCce
Q psy11036 138 GKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG-----GKRLISA-SLDHH 211 (239)
Q Consensus 138 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~-----~~~l~s~-s~d~~ 211 (239)
|..+++++ +.|++||++ +.+.+..+.+|.++|.++.|-.+ |.+++++ ..+.-
T Consensus 156 ~~~l~~as--~~ik~~~~~--------------------~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 156 GKILLTAS--RQIKVLDIE--------------------TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred CCEEEecc--ceEEEEEcc--------------------CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence 99999885 588888887 68888889999999999999887 6666655 34556
Q ss_pred EEEEEccC
Q psy11036 212 AKIYEMVN 219 (239)
Q Consensus 212 i~iwd~~~ 219 (239)
+.+|-+..
T Consensus 214 i~~w~v~~ 221 (541)
T KOG4547|consen 214 ITVWVVEK 221 (541)
T ss_pred eeEEEEEc
Confidence 77776543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-12 Score=101.08 Aligned_cols=200 Identities=13% Similarity=0.046 Sum_probs=121.7
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCE---EEEeeCC--CeEEEEeCCCCCceeee
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDI---VISGSYD--KTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---l~s~~~d--g~v~vw~~~~~~~~~~~ 81 (239)
.+.|++.|.+.+... .+.... ....+-+|+| +++. +.+...+ ..|.+.++.+++.....
T Consensus 164 ~~~l~~~d~dG~~~~-~lt~~~--------------~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt 227 (428)
T PRK01029 164 QGELWSVDYDGQNLR-PLTQEH--------------SLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL 227 (428)
T ss_pred cceEEEEcCCCCCce-EcccCC--------------CCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEee
Confidence 457778887655443 343343 5667889999 5543 2244444 36778888877655444
Q ss_pred cCCCCEEEEEEecCCcEEEEeC--CC--cE--EEEEccCC--CeEEEEEeccCCceEEEEEcCCCCEEEEEe-cCCeEEE
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG--GL--DV--CIWDMLGG--GKLLHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKI 152 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~--~~--~i--~~~d~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i 152 (239)
...+.....+|+|||+.|+... +| .+ ..|++... +................+|+|||+.|+..+ .+|...+
T Consensus 228 ~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~l 307 (428)
T PRK01029 228 ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRI 307 (428)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 5556666789999999888765 23 33 33666521 233333322233446789999999888765 4565444
Q ss_pred EEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCC---ceEEEEEccCCeeeEEecCC
Q psy11036 153 YEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD---HHAKIYEMVNFSPVHTLDYP 229 (239)
Q Consensus 153 ~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~ 229 (239)
|.+. +...+.....+..+...+....|||||+.|+..+.+ ..|.+||+.+++........
T Consensus 308 y~~~-----------------~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~ 370 (428)
T PRK01029 308 YIMQ-----------------IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP 370 (428)
T ss_pred EEEE-----------------CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC
Confidence 4332 111111222333344556788999999988866543 47999999888764433333
Q ss_pred CCeeeeEecC
Q psy11036 230 SPVLSIDVSM 239 (239)
Q Consensus 230 ~~v~~~~~sp 239 (239)
..+.+..|+|
T Consensus 371 ~~~~~p~wSp 380 (428)
T PRK01029 371 ENKESPSWAI 380 (428)
T ss_pred CCccceEECC
Confidence 4566777776
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-12 Score=91.99 Aligned_cols=201 Identities=9% Similarity=0.027 Sum_probs=144.0
Q ss_pred CCCEEEEeeCCCcceee--eeeC-CceeeccceeeccCCCCCeEEEEEec--CCCC-EEEEeeCCCeEEEEeCCCCCcee
Q psy11036 6 PILIVALWDIPSEAQVS--TFTN-HTTIYKVPLMLYSTPQDYVRAGTVSP--VSSD-IVISGSYDKTVNVYDTRSPDPVM 79 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~-~l~s~~~dg~v~vw~~~~~~~~~ 79 (239)
+-|.+.+|++.+.+... +++. .. ..+..+.|.- .++. .++-+-.+|.|.++.........
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dt--------------s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~ 109 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDT--------------STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV 109 (339)
T ss_pred eccceEEEeecccccCccceeeeecc--------------cccceeeeeeccCCccceeeeccccceEEEEeeccceeee
Confidence 45788999887665433 2221 12 5677777763 2444 56667778999998865443333
Q ss_pred eec------C-CCCEEEEEEecCCcEEEEeC-CCcEEEEEcc-CCCeEEEEEeccCCceEEEEEcCC-CCEEEEEecCCe
Q psy11036 80 SVN------H-GSPVESVLCLPSGGIFVTGG-GLDVCIWDML-GGGKLLHKFTCHHKTVTSLCLASG-GKRLISASLDHH 149 (239)
Q Consensus 80 ~~~------~-~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~-~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~ 149 (239)
.+. . .....++.|++.+..++++. +|.+.+-+.. ..-+..++.+.|.-++....|+.. .+.+.+|+.|+.
T Consensus 110 ~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~ 189 (339)
T KOG0280|consen 110 HLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS 189 (339)
T ss_pred eecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce
Confidence 331 1 11356788999888888887 5888855443 123344578899999999999764 468899999999
Q ss_pred EEEEEcccceEeeeecceeEEEEEccCCCEEE-EEEecccCcEEEEEEcc-CCCeEEEEcCCceEEEEEcc-CCeeeEEe
Q psy11036 150 AKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLL-HKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMV-NFSPVHTL 226 (239)
Q Consensus 150 i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~iwd~~-~~~~~~~~ 226 (239)
+..||++ ..++.+ ...+-|...|.++.-+| .+.+++||+.|-.|++||.+ -++++..-
T Consensus 190 l~~~D~R-------------------~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~ 250 (339)
T KOG0280|consen 190 LSCWDIR-------------------IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA 250 (339)
T ss_pred EEEEEec-------------------CCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC
Confidence 9999988 111222 22456889999998887 57899999999999999998 58899888
Q ss_pred cCCCCeeeeEecC
Q psy11036 227 DYPSPVLSIDVSM 239 (239)
Q Consensus 227 ~~~~~v~~~~~sp 239 (239)
+..+.|+-+.++|
T Consensus 251 ~v~GGVWRi~~~p 263 (339)
T KOG0280|consen 251 KVGGGVWRIKHHP 263 (339)
T ss_pred ccccceEEEEecc
Confidence 8889999999887
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-13 Score=106.56 Aligned_cols=177 Identities=16% Similarity=0.224 Sum_probs=136.7
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec---
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN--- 82 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--- 82 (239)
....|+-+|++.|+.+..|.... +.+.++..++ ...+|++|+.+|.|..||.+....+..+.
T Consensus 153 sg~evYRlNLEqGrfL~P~~~~~--------------~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 153 SGSEVYRLNLEQGRFLNPFETDS--------------GELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred cCcceEEEEcccccccccccccc--------------ccceeeeecC-ccceEEecccCceEEEecchhhhhheeeeccc
Confidence 34567788888888888888777 8999999999 78899999999999999999887766652
Q ss_pred ----CCC-----CEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCC--CEEEEEecCCeE
Q psy11036 83 ----HGS-----PVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG--KRLISASLDHHA 150 (239)
Q Consensus 83 ----~~~-----~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i 150 (239)
+++ .|+++.|+.+|-.+++|. +|.+.+||++.....+..-....-+|..+.|.+.+ ..+++. ....+
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~ 296 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRIL 296 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHh
Confidence 222 399999999999999998 79999999995444444444455689999998753 344444 45677
Q ss_pred EEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 151 KIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 151 ~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
+|||-. .+++...+.. ...+..+|+-|++.+++++-.++.+..|=+..
T Consensus 297 kiWd~~--------------------~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 297 KIWDEC--------------------TGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred hhcccc--------------------cCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 788766 4555555554 45599999999999999999888877765543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.4e-12 Score=100.45 Aligned_cols=209 Identities=15% Similarity=0.073 Sum_probs=131.3
Q ss_pred EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC---CeEEEEeCCCCCceeeecCCC
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD---KTVNVYDTRSPDPVMSVNHGS 85 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~v~vw~~~~~~~~~~~~~~~ 85 (239)
.|.++|.+.+.. +.+..+. ..+...+|+| +++.|+..+.+ ..|.+|++.+++........+
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~--------------~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g 243 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSR--------------EPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG 243 (430)
T ss_pred EEEEECCCCCCc-eEEecCC--------------CceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC
Confidence 577778765443 4454555 7789999999 67777655433 368999998887544334445
Q ss_pred CEEEEEEecCCcEEEEeC--CC--cEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec-CC--eEEEEEcccc
Q psy11036 86 PVESVLCLPSGGIFVTGG--GL--DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL-DH--HAKIYEMTLK 158 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~--~~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~i~d~~~~ 158 (239)
......|+|+|+.++... ++ .|.++|+. +++ ...+..+........|+|||+.++..+. ++ .|.++++.+.
T Consensus 244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~-~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA-SRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CcCCeEECCCCCEEEEEEccCCCceEEEEECC-CCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 566789999999887543 33 58888887 443 3445555556677899999998776654 33 5666676521
Q ss_pred eEeee-------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCC---c
Q psy11036 159 TVSSF-------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD---H 210 (239)
Q Consensus 159 ~~~~~-------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---~ 210 (239)
....+ .+...+.++|+.+..... +.. ........|+|||+.++..+.+ .
T Consensus 322 ~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt~-~~~~~~p~~spdg~~i~~~~~~~g~~ 398 (430)
T PRK00178 322 RAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI--LTD-TSLDESPSVAPNGTMLIYATRQQGRG 398 (430)
T ss_pred CEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE--ccC-CCCCCCceECCCCCEEEEEEecCCce
Confidence 11111 112236677776543222 111 1122345899999988766543 3
Q ss_pred eEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 211 HAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 211 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
.+.++++. +.....+. ..+.+...+|+|
T Consensus 399 ~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 399 VLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred EEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 56777774 44444555 446788888887
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-12 Score=100.84 Aligned_cols=167 Identities=19% Similarity=0.301 Sum_probs=121.1
Q ss_pred EEEEEecCCCCEEEEeeCC-----------CeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC---CCcEEEEE
Q psy11036 46 RAGTVSPVSSDIVISGSYD-----------KTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG---GLDVCIWD 111 (239)
Q Consensus 46 ~~~~~~~~~~~~l~s~~~d-----------g~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~~i~~~d 111 (239)
..+.|++.+..+|+.++.| .++.++++........+...++|.++.|+|+++-+++.. =-.+.+||
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn 300 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN 300 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence 3678888444455544332 368888887545555667789999999999998777665 37899999
Q ss_pred ccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecC---CeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEeccc
Q psy11036 112 MLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD---HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH 188 (239)
Q Consensus 112 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~ 188 (239)
++ +.++..+. .++-.++-|+|.|++++.+|.+ |.|-+||+. + .+++..+...
T Consensus 301 lr--~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~-------------------n-~K~i~~~~a~- 355 (566)
T KOG2315|consen 301 LR--GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP-------------------N-RKLIAKFKAA- 355 (566)
T ss_pred CC--CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEecc-------------------c-hhhccccccC-
Confidence 96 67776664 5677889999999999998876 556666655 3 5555555543
Q ss_pred CcEEEEEEccCCCeEEEEcC------CceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 189 KTVTSLCLASGGKRLISASL------DHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 189 ~~v~~~~~s~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.-+-..|+|||++++|+.. |+.++||+. +|..+.....++....++|-|
T Consensus 356 -~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 356 -NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKSELLQVEWRP 410 (566)
T ss_pred -CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhHhHhheeeee
Confidence 3445789999999998875 788999998 777777665554566666643
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-10 Score=88.55 Aligned_cols=200 Identities=14% Similarity=0.104 Sum_probs=137.5
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee---------CCCeEEEEeCCCCCce
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS---------YDKTVNVYDTRSPDPV 78 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---------~dg~v~vw~~~~~~~~ 78 (239)
+.|.+.|.++++.+.++.... .+- .+ ++|++..+.++.+ .+..|.+||..+.+.+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~--------------~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF--------------LPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC--------------CCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 899999999999999998775 333 34 9994344444555 5789999999999999
Q ss_pred eeecCCCC--------EEEEEEecCCcEEEEeC---CCcEEEEEccCCCeEEEEEecc------------------CC--
Q psy11036 79 MSVNHGSP--------VESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKLLHKFTCH------------------HK-- 127 (239)
Q Consensus 79 ~~~~~~~~--------v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~------------------~~-- 127 (239)
..+..+.. ...++++|+|+++++.. +..|.+.|+. .++.+.++.-. .+
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~-~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~ 169 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE-GKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSL 169 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECC-CCcEEEEEeCCCCcEEEEecCCccEEEeecCce
Confidence 88854333 34789999999999877 5889999997 44433332100 00
Q ss_pred -----------ceEEE--------------EEcC-CCCEEEEEecCCeEEEEEcc------cceEeee------------
Q psy11036 128 -----------TVTSL--------------CLAS-GGKRLISASLDHHAKIYEMT------LKTVSSF------------ 163 (239)
Q Consensus 128 -----------~i~~i--------------~~~~-~~~~l~~~~~d~~i~i~d~~------~~~~~~~------------ 163 (239)
..... .|.+ +|+++....+ |.|.+.|+. ......+
T Consensus 170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~ 248 (352)
T TIGR02658 170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG 248 (352)
T ss_pred EEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCC
Confidence 01111 1233 6776666655 999999842 1111110
Q ss_pred ---------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC-eEEEEc-CCceEEE
Q psy11036 164 ---------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISAS-LDHHAKI 214 (239)
Q Consensus 164 ---------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s-~d~~i~i 214 (239)
.+...+.++|..+ .+.+..+.. ...+..++++||++ +|++.. .++.|.+
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 1124577888766 555555543 45788999999999 887666 5888999
Q ss_pred EEccCCeeeEEec
Q psy11036 215 YEMVNFSPVHTLD 227 (239)
Q Consensus 215 wd~~~~~~~~~~~ 227 (239)
+|..+++.++++.
T Consensus 327 iD~~t~k~i~~i~ 339 (352)
T TIGR02658 327 FDAETGKELSSVN 339 (352)
T ss_pred EECcCCeEEeeec
Confidence 9999999999984
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-11 Score=99.37 Aligned_cols=178 Identities=13% Similarity=0.101 Sum_probs=108.7
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC-CC--eEEEEeCCCCCceeeecCC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY-DK--TVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg--~v~vw~~~~~~~~~~~~~~ 84 (239)
..|.++|.+.... +.+..+. ..+.+..|+| +++.|+..+. ++ .|.+||+.+++........
T Consensus 198 ~~l~i~d~dG~~~-~~l~~~~--------------~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~ 261 (448)
T PRK04792 198 YQLMIADYDGYNE-QMLLRSP--------------EPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP 261 (448)
T ss_pred eEEEEEeCCCCCc-eEeecCC--------------CcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC
Confidence 4667777654433 3444444 7788999999 6777665543 33 6888999887654332333
Q ss_pred CCEEEEEEecCCcEEEEeC--CCc--EEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec-CCeEEEEEcccce
Q psy11036 85 SPVESVLCLPSGGIFVTGG--GLD--VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL-DHHAKIYEMTLKT 159 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~--~~~--i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~~~~ 159 (239)
+......|+|+|+.++... ++. |.++|+. +++ ...+..+.......+|+|||+.|+..+. ++...+|
T Consensus 262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy------ 333 (448)
T PRK04792 262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA-TKA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIY------ 333 (448)
T ss_pred CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC-CCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEE------
Confidence 4455789999999887653 454 7777876 443 4445555556678899999998876654 3333332
Q ss_pred EeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC-Cc--eEEEEEccCCee
Q psy11036 160 VSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL-DH--HAKIYEMVNFSP 222 (239)
Q Consensus 160 ~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-d~--~i~iwd~~~~~~ 222 (239)
++|+.+.........+ ......+|+|||++|+..+. ++ .|.++|+.+++.
T Consensus 334 -----------~~dl~~g~~~~Lt~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 334 -----------RVNLASGKVSRLTFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred -----------EEECCCCCEEEEecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 2233222111111222 22345689999998876654 34 466678777754
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-12 Score=103.40 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=86.5
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEe-eCCCeEEEE--eCCCCCceeeecCC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISG-SYDKTVNVY--DTRSPDPVMSVNHG 84 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~v~vw--~~~~~~~~~~~~~~ 84 (239)
..|++||+.+++... +.... +....++|+| +++.|+.+ +.+|.+.|| |+.+++......+.
T Consensus 228 ~~i~i~dl~tg~~~~-l~~~~--------------g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~ 291 (429)
T PRK01742 228 SQLVVHDLRSGARKV-VASFR--------------GHNGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGA 291 (429)
T ss_pred cEEEEEeCCCCceEE-EecCC--------------CccCceeECC-CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCC
Confidence 479999998876432 22111 2334689999 77776665 467866555 66666544333566
Q ss_pred CCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 85 SPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
..+....|+|+|+.++.++ ++...+|+++..+.....+ .+.. ....|+|+|++|+..+.++ +.+||+.
T Consensus 292 ~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~ 361 (429)
T PRK01742 292 GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLT 361 (429)
T ss_pred CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECC
Confidence 6788899999999877665 5788888876333333333 3433 4578999999998887765 5558887
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=107.37 Aligned_cols=179 Identities=15% Similarity=0.193 Sum_probs=134.0
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC-CceeeecCCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP-DPVMSVNHGS 85 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~~~~~ 85 (239)
+..+.+||...+.....+..... .+. ....-+.+++ +.-++++|+--+.|.+|+.... .+....+|++
T Consensus 108 ~ns~~i~d~~~~~~~~~i~~~er---~~l-------~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG 176 (967)
T KOG0974|consen 108 RNSLLIRDSKNSSVLSKIQSDER---CTL-------YSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG 176 (967)
T ss_pred CceEEEEecccCceehhcCCCce---EEE-------EeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceecccCC
Confidence 45666677665555554444320 000 1122233444 5568889999999999998633 3444458999
Q ss_pred CEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeee
Q psy11036 86 PVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFT 164 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 164 (239)
.+..+.++.+|+++++.+ |.++++|++..........-+|...+..++|.|+ .+++++.|.+.++|+..
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-------- 246 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-------- 246 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc--------
Confidence 999999999999999999 6999999999444444466789999999999988 89999999999999876
Q ss_pred cceeEEEEEccCCCEEEEEEeccc-CcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 165 GGLDVCIWDMLGGGKLLHKFTCHH-KTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 165 ~~~~i~~~d~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
...+..+.+|. ..|..++..++...++|++.|+.+++|++..
T Consensus 247 -------------~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 247 -------------GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -------------cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 33333556665 4688999999999999999999999999854
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-11 Score=98.23 Aligned_cols=216 Identities=14% Similarity=0.212 Sum_probs=148.4
Q ss_pred CCCEEEEeeC-C-C--cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 6 PILIVALWDI-P-S--EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 6 ~dg~i~vwd~-~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
.||.|.+|.- . + ......+.-|. ++|.+++|++ +|.+|++|+..|.+.+|.+.+++....-
T Consensus 225 ~dGrI~vw~d~~~~~~~~t~t~lHWH~--------------~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~kqfLP 289 (792)
T KOG1963|consen 225 SDGRILVWRDFGSSDDSETCTLLHWHH--------------DEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGKKQFLP 289 (792)
T ss_pred cCCcEEEEeccccccccccceEEEecc--------------cccceeEEec-CCceEeecccceEEEEEeecCCCccccc
Confidence 5799999953 2 1 22345666777 8999999999 8999999999999999999999833332
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEe-----------ccCCceEEEEEcCCCCEEEEEecCCe
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFT-----------CHHKTVTSLCLASGGKRLISASLDHH 149 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~-----------~~~~~i~~i~~~~~~~~l~~~~~d~~ 149 (239)
+..++|..+.++|++.+.+... |+.|.+.... ......++. ...+-.+.++++|.-+.++-.+..|.
T Consensus 290 RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~-dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~ 368 (792)
T KOG1963|consen 290 RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS-DLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH 368 (792)
T ss_pred ccCCeeEEEEEcCCCCeEEEEecCceEEEEecc-chhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce
Confidence 6889999999999998887776 8998887663 222221211 12445678889997788888899999
Q ss_pred EEEEEcc-cceEeee-------------------------------------------ecceeEEEEEccCCCE---EE-
Q psy11036 150 AKIYEMT-LKTVSSF-------------------------------------------TGGLDVCIWDMLGGGK---LL- 181 (239)
Q Consensus 150 i~i~d~~-~~~~~~~-------------------------------------------~~~~~i~~~d~~~~~~---~~- 181 (239)
|.+||+. .+.+..+ .|...+++|-.....+ +.
T Consensus 369 vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T 448 (792)
T KOG1963|consen 369 VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNT 448 (792)
T ss_pred EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEE
Confidence 9999987 3333333 1123366665433211 11
Q ss_pred EEEecccCcEEEEEEccC--CCeEEEEcCCceEEEEEccCCe----------e--eEEecCCCCeeeeEec
Q psy11036 182 HKFTCHHKTVTSLCLASG--GKRLISASLDHHAKIYEMVNFS----------P--VHTLDYPSPVLSIDVS 238 (239)
Q Consensus 182 ~~~~~h~~~v~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~----------~--~~~~~~~~~v~~~~~s 238 (239)
....+|...+...++.+. ....++++.||.++||-+..-+ + +..+ +..++++++|+
T Consensus 449 ~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i~a~~fs 518 (792)
T KOG1963|consen 449 KINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPITALCFS 518 (792)
T ss_pred EEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc-ccCcccchhhc
Confidence 223467777776666653 2378999999999999883211 1 1121 56677777775
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=97.09 Aligned_cols=145 Identities=21% Similarity=0.290 Sum_probs=115.6
Q ss_pred CCCC--CEEEEeeCCCcceeeeeeCCceeeccceeeccCC-CCCeEEEEEecCC--CCEEEEeeCCCeEEEEeCCCC-Cc
Q psy11036 4 DLPI--LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTP-QDYVRAGTVSPVS--SDIVISGSYDKTVNVYDTRSP-DP 77 (239)
Q Consensus 4 ~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~--~~~l~s~~~dg~v~vw~~~~~-~~ 77 (239)
.|.. ..+.+||++..+++ +.+.. +|+..+... +-.++++.|-+ + ...|++++.-+.|++||.+.+ ++
T Consensus 167 GGke~~n~lkiwdle~~~qi--w~aKN----vpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRP 239 (412)
T KOG3881|consen 167 GGKENINELKIWDLEQSKQI--WSAKN----VPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRP 239 (412)
T ss_pred Cchhcccceeeeecccceee--eeccC----CCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcc
Confidence 4555 78999999877544 44332 111111100 14678899998 6 789999999999999999866 46
Q ss_pred eeeec-CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEE-EeccCCceEEEEEcCCCCEEEEEecCCeEEEEE
Q psy11036 78 VMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHK-FTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 154 (239)
Q Consensus 78 ~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d 154 (239)
+..+. .+.+++++...|++++++++. .+.+..+|++ .++.... +++..+.|+++..+|.+.++++++-|..++|+|
T Consensus 240 V~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r-~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 240 VAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR-GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred eeEeccccCcceeeeecCCCcEEEEecccchhheeccc-CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 77774 578899999999999999999 5999999999 6665554 888999999999999999999999999999999
Q ss_pred cc
Q psy11036 155 MT 156 (239)
Q Consensus 155 ~~ 156 (239)
++
T Consensus 319 ~k 320 (412)
T KOG3881|consen 319 IK 320 (412)
T ss_pred cc
Confidence 98
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-12 Score=100.41 Aligned_cols=171 Identities=15% Similarity=0.156 Sum_probs=127.5
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEe-
Q psy11036 47 AGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFT- 123 (239)
Q Consensus 47 ~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~- 123 (239)
.++++.....+++.| ....|+-++++.|..+.-+. ..+.++++..++...++++|+ +|.|..||.+ ....+.++.
T Consensus 138 Dm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR-~ksrv~~l~~ 215 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR-DKSRVGTLDA 215 (703)
T ss_pred cccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch-hhhhheeeec
Confidence 445544234445444 44568888999998888774 458899999999999999999 8999999998 555555443
Q ss_pred -----ccCC-----ceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEE
Q psy11036 124 -----CHHK-----TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTS 193 (239)
Q Consensus 124 -----~~~~-----~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~ 193 (239)
.|.+ .|+++.|+.+|-.+++|+.+|.+.|||++ .....+..-++...+|..
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR-------------------a~~pl~~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR-------------------ASKPLLVKDHGYELPIKK 276 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcc-------------------cCCceeecccCCccceee
Confidence 2333 49999999999999999999999999998 112222222444568889
Q ss_pred EEEccC--CCeEEEEcCCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 194 LCLASG--GKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 194 ~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
+.|.+. +..++|. ....++|||-.+|++...+.....++.+|+-|
T Consensus 277 l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p 323 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVP 323 (703)
T ss_pred ecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeec
Confidence 999875 3445544 45689999999999999999777788888754
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.44 E-value=5e-09 Score=81.63 Aligned_cols=217 Identities=12% Similarity=0.157 Sum_probs=136.1
Q ss_pred CCCEEEEeeCCCc--c--eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee-CCCeEEEEeCCCC-Ccee
Q psy11036 6 PILIVALWDIPSE--A--QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS-YDKTVNVYDTRSP-DPVM 79 (239)
Q Consensus 6 ~dg~i~vwd~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~vw~~~~~-~~~~ 79 (239)
..|.|..|.+... + .+....... .....++++| ++++|+++. .+|.|.++++... ....
T Consensus 60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g--------------~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~ 124 (345)
T PF10282_consen 60 DSGGVSSYRIDPDTGTLTLLNSVPSGG--------------SSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGE 124 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEEESS--------------SCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEE
T ss_pred CCCCEEEEEECCCcceeEEeeeeccCC--------------CCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccce
Confidence 5678888877653 2 233333222 4566899999 677777765 5899999999863 3222
Q ss_pred e---ec-----------CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEE---EEEe-ccCCceEEEEEcCCCC
Q psy11036 80 S---VN-----------HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLL---HKFT-CHHKTVTSLCLASGGK 139 (239)
Q Consensus 80 ~---~~-----------~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~---~~~~-~~~~~i~~i~~~~~~~ 139 (239)
. +. ......++.++|+++++++.. ...|.+|++......+ ..+. .....-..++|+|+++
T Consensus 125 ~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~ 204 (345)
T PF10282_consen 125 VVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGK 204 (345)
T ss_dssp EEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSS
T ss_pred eeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcC
Confidence 1 11 234578999999999998886 4789999997433212 2222 2344568999999998
Q ss_pred EEEEEe-cCCeEEEEEcc--cceE---eee-----------------------------ecceeEEEEEccCC-C--EEE
Q psy11036 140 RLISAS-LDHHAKIYEMT--LKTV---SSF-----------------------------TGGLDVCIWDMLGG-G--KLL 181 (239)
Q Consensus 140 ~l~~~~-~d~~i~i~d~~--~~~~---~~~-----------------------------~~~~~i~~~d~~~~-~--~~~ 181 (239)
++.+.. .++.|.++++. ...+ ..+ .+...|.+|++... + +.+
T Consensus 205 ~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~ 284 (345)
T PF10282_consen 205 YAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLV 284 (345)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEE
T ss_pred EEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEE
Confidence 876654 57889999887 2111 111 23445888888332 2 333
Q ss_pred EEEecccCcEEEEEEccCCCeEEEEc-CCceEEEEEc--cCCeeeEEec--CCCCeeeeEe
Q psy11036 182 HKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEM--VNFSPVHTLD--YPSPVLSIDV 237 (239)
Q Consensus 182 ~~~~~h~~~v~~~~~s~~~~~l~s~s-~d~~i~iwd~--~~~~~~~~~~--~~~~v~~~~~ 237 (239)
..+.........++++|+|++|+++. .++.|.+|++ ++|.+...-. .-....|+.|
T Consensus 285 ~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 285 QTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 34443344578999999999998776 5778999977 5676654432 3344555554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.3e-13 Score=115.42 Aligned_cols=178 Identities=20% Similarity=0.307 Sum_probs=139.8
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
+.+.||.|++|....++.+..++...+ ..|+.+.|+. .|+.+..+..||.+.+|... .++....
T Consensus 2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~-------------s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk~~~s~q 2289 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGN-------------SRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PKPYTSWQ 2289 (2439)
T ss_pred ecCCCceEEEEeccCCCeEEEeeccCc-------------chhhhhhhcc-cCCceeeeccCCceeecccC-Ccceeccc
Confidence 457899999999999998888876542 7899999999 78888888999999999987 4444444
Q ss_pred cCCCCEEEEEEecCCcEEEEeC----CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEccc
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG----GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTL 157 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 157 (239)
.|......+.|-. ..+++++ ++.+.+||..........-..|.+.++++++.|..+.|++|+.+|.|++||++
T Consensus 2290 chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~r- 2366 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIR- 2366 (2439)
T ss_pred cCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehH-
Confidence 5778888888874 6666666 38899999864443333337899999999999999999999999999999998
Q ss_pred ceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 158 KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 158 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
..+..+.++. +. ...++++|+..|.++||++.....+++++
T Consensus 2367 -------------------qrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2367 -------------------QRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred -------------------HHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 2222222222 33 56789999999999999998887777776
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=101.73 Aligned_cols=127 Identities=22% Similarity=0.392 Sum_probs=103.0
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEE-eccCCceEEEEEcC--CCCEEEEEecCCeEEEEEccc
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKF-TCHHKTVTSLCLAS--GGKRLISASLDHHAKIYEMTL 157 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~-~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~i~d~~~ 157 (239)
+|.+.|.|+.|+.+|.+|++|+ |-.+.|||.- ..++++.+ .+|...|.++.|-| +.+.+++|..|..|+++|+..
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecch-hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 7999999999999999999999 5889999998 66667666 48999999999998 457899999999999999981
Q ss_pred ceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC-CeEEEEcCCceEEEEEccC
Q psy11036 158 KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 158 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~i~iwd~~~ 219 (239)
..-... | ..-.+....+..|...|..++-.|++ ..+.++++||+|+-+|++.
T Consensus 127 ~~~~~~---------d-~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 127 SKEGGM---------D-HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred cccccc---------c-cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 100000 0 00134455567899999999999988 7888999999999999975
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.9e-12 Score=93.62 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=112.1
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEeCCCCCc----eeeecCCCCEEEEEEecCCcEEEEeC-C---CcEEEEEccCCCeE
Q psy11036 47 AGTVSPVSSDIVISGSYDKTVNVYDTRSPDP----VMSVNHGSPVESVLCLPSGGIFVTGG-G---LDVCIWDMLGGGKL 118 (239)
Q Consensus 47 ~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~-~---~~i~~~d~~~~~~~ 118 (239)
.+..++ ++++++.+..+....++++..... .........-+++.+..+.....++. . ..+.+|... . ..
T Consensus 67 ~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~-~-~~ 143 (390)
T KOG3914|consen 67 LVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD-S-GR 143 (390)
T ss_pred ccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccc-c-cC
Confidence 344556 788999888888877777765443 22223444455666665555444443 2 445555554 2 34
Q ss_pred EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEc
Q psy11036 119 LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 197 (239)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s 197 (239)
...+-+|-..++.++++||+++++++..|..|++-... ...+. .-.-||..-|..++.-
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie--------------------sfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE--------------------SFCLGHKEFVSTISLT 203 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh--------------------hhccccHhheeeeeec
Confidence 44556899999999999999999999999999987766 11111 1235799999999987
Q ss_pred cCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 198 SGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 198 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
+ ++.|+++|.|++|++||+.+|+.+.++.
T Consensus 204 ~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 204 D-NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred c-CceeeecCCCCcEEEEecccCCcccccc
Confidence 5 4569999999999999999999998776
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-12 Score=111.07 Aligned_cols=161 Identities=22% Similarity=0.326 Sum_probs=130.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec--CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN--HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~ 119 (239)
..|.++.-+| ...+.++|+.||.+++|....++.+..+. ....|+.+.|+.+|..+..+. ||.+.+|... .++.
T Consensus 2209 ~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~~ 2285 (2439)
T KOG1064|consen 2209 ENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKPY 2285 (2439)
T ss_pred CceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--Ccce
Confidence 6788888889 67899999999999999999998887773 348899999999998887776 8999999984 7788
Q ss_pred EEEeccCCceEEEEEcCCCCEEEEEe---cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEE
Q psy11036 120 HKFTCHHKTVTSLCLASGGKRLISAS---LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL 196 (239)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~ 196 (239)
...+.|+.....+.|-. ..+++++ .++.+.+||.-- ......+. ..|.+.++++++
T Consensus 2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~-----------------~~~~s~v~--~~H~~gaT~l~~ 2344 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLL-----------------PPMNSLVH--TCHDGGATVLAY 2344 (2439)
T ss_pred eccccCCccccceeeee--hhhhccccCCCCCcccchhccc-----------------Ccccceee--eecCCCceEEEE
Confidence 88889999999999964 5566655 356777777650 01123333 789999999999
Q ss_pred ccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 197 ASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 197 s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.|..+.|++|+.+|.|++||++..+..+.++
T Consensus 2345 ~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2345 APKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred cCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence 9999999999999999999998877665554
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-11 Score=91.86 Aligned_cols=138 Identities=10% Similarity=0.075 Sum_probs=108.7
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccC-----CCeEEEEEe-ccCCceEEEEEcCCCCEEEEEecCCeEEEEE
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLG-----GGKLLHKFT-CHHKTVTSLCLASGGKRLISASLDHHAKIYE 154 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~-----~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d 154 (239)
+|.+.|.++.|+.++++|++|+ |..+++|++.. ..+++..+. .|...|.+++|.-..+.+.+|+.+++|...|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 6899999999999999999999 58899999852 234555544 4568999999999889999999999999999
Q ss_pred cccceEeeeecceeEEEEEccCCCEEEEEEe--cccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCe----eeEEecC
Q psy11036 155 MTLKTVSSFTGGLDVCIWDMLGGGKLLHKFT--CHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFS----PVHTLDY 228 (239)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~~ 228 (239)
+. ..+.+..+. ...+.|..+..+|-.+.|++.+.++.|.+||.+... ++.--..
T Consensus 134 iE--------------------t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 134 IE--------------------TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred cc--------------------cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 98 222222222 234589999999999999999999999999997543 3333346
Q ss_pred CCCeeeeEecC
Q psy11036 229 PSPVLSIDVSM 239 (239)
Q Consensus 229 ~~~v~~~~~sp 239 (239)
+....++.|+|
T Consensus 194 ~~~F~t~~F~P 204 (609)
T KOG4227|consen 194 GKNFYTAEFHP 204 (609)
T ss_pred CccceeeeecC
Confidence 67777887776
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-12 Score=95.26 Aligned_cols=138 Identities=10% Similarity=0.118 Sum_probs=107.4
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEec
Q psy11036 47 AGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTC 124 (239)
Q Consensus 47 ~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~ 124 (239)
-+.|+| +++++++.+.- .+.|-|..+-+....+..-..|.-+.|..+..+++.+. ++.|.+|++. ..+-..++..
T Consensus 13 ~c~fSp-~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~-Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSP-CGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLV-QPEWYCKIDE 89 (447)
T ss_pred ceeECC-CCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEee-cceeEEEecc
Confidence 467999 89999998875 78899998887766665566788889998888777766 7899999998 7777788888
Q ss_pred cCCceEEEEEcCCCCEEE-EEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeE
Q psy11036 125 HHKTVTSLCLASGGKRLI-SASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 203 (239)
Q Consensus 125 ~~~~i~~i~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 203 (239)
...++..++|+|||+.++ +...+-.|.+|.+. .+...-++-....+..++|+|||++.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~---------------------t~~~~~~~~pK~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLN---------------------TQKGYLLPHPKTNVKGYAFHPDGQFC 148 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEec---------------------cceeEEecccccCceeEEECCCCcee
Confidence 889999999999996655 56668888888887 12222223334557889999999998
Q ss_pred EEEcC
Q psy11036 204 ISASL 208 (239)
Q Consensus 204 ~s~s~ 208 (239)
+.++.
T Consensus 149 ai~sR 153 (447)
T KOG4497|consen 149 AILSR 153 (447)
T ss_pred eeeec
Confidence 87653
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-11 Score=98.56 Aligned_cols=170 Identities=12% Similarity=0.202 Sum_probs=123.6
Q ss_pred CeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEE-----EEEEecCCcEEEEeC-CCcEEEEEccCCCe
Q psy11036 44 YVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVE-----SVLCLPSGGIFVTGG-GLDVCIWDMLGGGK 117 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~ 117 (239)
.|....+.. ....++.+..+..+.+||...+.....+.+...+. -+-.+++.-++++|. -+.|.+|+......
T Consensus 89 wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 89 WIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred cccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 343434444 45677778888899999998877766665554432 223455666777777 69999999984444
Q ss_pred EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEc
Q psy11036 118 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 197 (239)
Q Consensus 118 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s 197 (239)
+. .+.+|.+.|..+.++.+|+++++.+.|.++++|+++.. .......-+|...|..++|.
T Consensus 168 p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~-------------------~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 168 PI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSR-------------------EVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred cc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccc-------------------cccCcccccccceeEEEEec
Confidence 44 68899999999999999999999999999999999811 11112446899999999999
Q ss_pred cCCCeEEEEcCCceEEEEEccCCeeeEEec-C-CCCeeeeEe
Q psy11036 198 SGGKRLISASLDHHAKIYEMVNFSPVHTLD-Y-PSPVLSIDV 237 (239)
Q Consensus 198 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~-~~~v~~~~~ 237 (239)
|+ .++|++.|.+.++|+. .++.+..+. | ...+..++.
T Consensus 228 ~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~ 266 (967)
T KOG0974|consen 228 PN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAV 266 (967)
T ss_pred cc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEE
Confidence 98 8999999999999965 344444444 2 234554443
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-12 Score=103.70 Aligned_cols=177 Identities=20% Similarity=0.327 Sum_probs=135.2
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-ceeee-cCCCCEEEEEEecC-CcEEEEeCCCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD-PVMSV-NHGSPVESVLCLPS-GGIFVTGGGLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~~~i~~~d~~~~~~~~ 119 (239)
..|+.+.|+|+....+++++-|-.+..||+++.. ++... .-......++|+-. +..+++...+.|.+||++....++
T Consensus 115 raitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl 194 (1081)
T KOG0309|consen 115 RAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPL 194 (1081)
T ss_pred cceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcce
Confidence 8999999999989999999999999999998865 33333 34556778899874 445555557889999999888999
Q ss_pred EEEeccCCceEEEEEcCC-CCEEEEEecCCeEEEEEcc---cceEeee-----------------------eccee----
Q psy11036 120 HKFTCHHKTVTSLCLASG-GKRLISASLDHHAKIYEMT---LKTVSSF-----------------------TGGLD---- 168 (239)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~---~~~~~~~-----------------------~~~~~---- 168 (239)
..+++|-..|..+.|+.- ...+.+++.|++|+.||.. .+.-+.. .|+.-
T Consensus 195 ~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~ 274 (1081)
T KOG0309|consen 195 CSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQL 274 (1081)
T ss_pred EEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeec
Confidence 999999999999999763 3568889999999999987 1111111 22222
Q ss_pred -----EEEEEccCCCEEEEEEecccCcEEEEEEccCC----------CeEEEEcCCceEEEEEccC
Q psy11036 169 -----VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG----------KRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 169 -----i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~----------~~l~s~s~d~~i~iwd~~~ 219 (239)
...|+..+..++++.+.+|...|....|-..+ -.|+|-|.|..+++|-+.+
T Consensus 275 ~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 275 RCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 23455566678999999999988766554321 2599999999999998753
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-11 Score=87.22 Aligned_cols=163 Identities=20% Similarity=0.186 Sum_probs=111.5
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC-Cceee--ecCCCCEEEEEEec-CCcEEEEeC-CCcEEEEEccCCCe
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP-DPVMS--VNHGSPVESVLCLP-SGGIFVTGG-GLDVCIWDMLGGGK 117 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~-~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~-~~~i~~~d~~~~~~ 117 (239)
-++...+|+..+.+++.+|+.|+.+..||++.. +.+.. ..|...|.+|.-+| .+.++++|+ |..|++||.|+-++
T Consensus 166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 888999999878899999999999999999943 33332 14888899999887 577888998 89999999997788
Q ss_pred EEEEEeccCCceEEEEEcCCC--CEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEE
Q psy11036 118 LLHKFTCHHKTVTSLCLASGG--KRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLC 195 (239)
Q Consensus 118 ~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~ 195 (239)
++..-. -.+.|..+.++|.- ..|+++ .-+-.+|-+....... + .......+.|.+-...-.
T Consensus 246 Pl~~~~-v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~~~e-~--------------~~~~~s~~~hdSl~YG~D 308 (339)
T KOG0280|consen 246 PLFKAK-VGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDKVLE-F--------------QIVLPSDKIHDSLCYGGD 308 (339)
T ss_pred ccccCc-cccceEEEEecchhhhHHHHHH-HhcCceEEEecccccc-h--------------heeeeccccccceeeccc
Confidence 776655 34889999999943 334444 3333555555511000 0 112333455666555556
Q ss_pred EccCCCeEEEEc-CCceEE-EEEccCCee
Q psy11036 196 LASGGKRLISAS-LDHHAK-IYEMVNFSP 222 (239)
Q Consensus 196 ~s~~~~~l~s~s-~d~~i~-iwd~~~~~~ 222 (239)
|..-..+|+|++ .|+.++ +|-.-++++
T Consensus 309 Wd~~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 309 WDSKDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred cccccceeeeeeccccceeeeeeeccCCc
Confidence 644445688876 477755 776655543
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.6e-11 Score=86.68 Aligned_cols=138 Identities=20% Similarity=0.271 Sum_probs=104.2
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceE
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTV 160 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 160 (239)
+|...+.+++|.|....+.++. |..+.+||+-........+.+|...|..+...+--+.+.+++.||.|.+|+++....
T Consensus 195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 5888999999999888888888 799999999855666778889999999998888888999999999999999982222
Q ss_pred ee--e----------------------------------------e--------------cceeEEEEEccC------CC
Q psy11036 161 SS--F----------------------------------------T--------------GGLDVCIWDMLG------GG 178 (239)
Q Consensus 161 ~~--~----------------------------------------~--------------~~~~i~~~d~~~------~~ 178 (239)
.+ + + -+.++++-|.-. +.
T Consensus 275 etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~ 354 (404)
T KOG1409|consen 275 ETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEER 354 (404)
T ss_pred cCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCC
Confidence 11 1 0 012244433211 12
Q ss_pred EEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 179 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
.++.....-...|+.+.+...-.+|+|++.|..|+|||++.
T Consensus 355 t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 355 TPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred CccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 23444444456799999988888999999999999999864
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.6e-12 Score=92.21 Aligned_cols=152 Identities=17% Similarity=0.244 Sum_probs=118.1
Q ss_pred EEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCC----CeEEEEEeccCCceEEEE
Q psy11036 59 ISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGG----GKLLHKFTCHHKTVTSLC 133 (239)
Q Consensus 59 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~----~~~~~~~~~~~~~i~~i~ 133 (239)
++.+.+..+-+-|++++.. ..+...+.|.++.|...+.++..|. +|.|..+|++.. +.+.+.+. |...|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 4556667788889888754 3445778899999998888999888 799999999854 34555554 889999998
Q ss_pred EcC-CCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEE--EEccCCCeEEEEcCC
Q psy11036 134 LAS-GGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSL--CLASGGKRLISASLD 209 (239)
Q Consensus 134 ~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~--~~s~~~~~l~s~s~d 209 (239)
.-. ++.+|.+.+.+|+|++||.+ .++ +.-+..+.+|...-.-+ -..+....+++++.|
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~------------------~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKC------------------KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhc------------------ccceeeeecccccccccccccccccceEEEccCe
Confidence 766 78899999999999999999 332 23355667776544333 345667788999999
Q ss_pred ceEEEEEccCCeeeEEecCCC
Q psy11036 210 HHAKIYEMVNFSPVHTLDYPS 230 (239)
Q Consensus 210 ~~i~iwd~~~~~~~~~~~~~~ 230 (239)
...|||.++.|..+.+++.+.
T Consensus 368 cytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eEEEEEecccCceeeccCCCC
Confidence 999999999999999998544
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-12 Score=96.92 Aligned_cols=116 Identities=22% Similarity=0.270 Sum_probs=87.4
Q ss_pred CCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee--cCCCCEEEEEEecC--CcEEEEeC-CCcEEEEEccC
Q psy11036 40 TPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--NHGSPVESVLCLPS--GGIFVTGG-GLDVCIWDMLG 114 (239)
Q Consensus 40 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~--~~~l~~~~-~~~i~~~d~~~ 114 (239)
.+++.|..+.|+. .+..|++|+.|..|.+||...+++...+ +|...|....|-|. .+.+++.+ ||.+++=.+..
T Consensus 140 ~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred CCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 3349999999999 8999999999999999999999888877 58888888888883 45566655 89998877664
Q ss_pred CCeE--EEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEEcc
Q psy11036 115 GGKL--LHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMT 156 (239)
Q Consensus 115 ~~~~--~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~ 156 (239)
++.. ...+..|.++|..++.-|+. .-|.+++.|+.+.-+|++
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr 263 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR 263 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence 4433 23445677777777777754 346667777776666664
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=85.85 Aligned_cols=182 Identities=13% Similarity=0.241 Sum_probs=126.3
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc-----eeee-------------cCCCCEEEEEEecCCc---EEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP-----VMSV-------------NHGSPVESVLCLPSGG---IFVT 101 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~-----~~~~-------------~~~~~v~~~~~~~~~~---~l~~ 101 (239)
+-|.++.|.. .|++|++|..+|.|.++.-..... ...+ .....|..+.|.+++. ++++
T Consensus 26 diis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 26 DIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred cceeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 6788999999 899999999999999987543221 1111 1346788999998654 5666
Q ss_pred eCCCcEEEEEccCCCeEE----------------------------------EE-EeccCCceEEEEEcCCCCEEEEEec
Q psy11036 102 GGGLDVCIWDMLGGGKLL----------------------------------HK-FTCHHKTVTSLCLASGGKRLISASL 146 (239)
Q Consensus 102 ~~~~~i~~~d~~~~~~~~----------------------------------~~-~~~~~~~i~~i~~~~~~~~l~~~~~ 146 (239)
+.|.+|++|.+...+... +. -.+|.-.|.+|+++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 669999999876321111 00 02577789999999999888887 6
Q ss_pred CCeEEEEEcc--cceEeee------------------------------ecceeEEEEEccCCCEEEE-----E------
Q psy11036 147 DHHAKIYEMT--LKTVSSF------------------------------TGGLDVCIWDMLGGGKLLH-----K------ 183 (239)
Q Consensus 147 d~~i~i~d~~--~~~~~~~------------------------------~~~~~i~~~d~~~~~~~~~-----~------ 183 (239)
|=.|.+|++. .+..... +..+.|++-|++...-+.. .
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 7889999987 3322222 4567799999884321111 1
Q ss_pred ----EecccCcEEEEEEccCCCeEEEEcCCceEEEEEc-cCCeeeEEec
Q psy11036 184 ----FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM-VNFSPVHTLD 227 (239)
Q Consensus 184 ----~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~-~~~~~~~~~~ 227 (239)
+..--..|..+.|+++|+++++-+. -+|++||+ ...+++.+++
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~ 311 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYP 311 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEe
Confidence 1112246889999999999997643 58999999 4566776665
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-09 Score=84.31 Aligned_cols=197 Identities=9% Similarity=0.048 Sum_probs=109.3
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCC-EEEEeeCC--CeEEEEeCCCCCceeeecC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSD-IVISGSYD--KTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d--g~v~vw~~~~~~~~~~~~~ 83 (239)
...|+++|+.+++...... .. +......|+| +++ ++++.+.+ ..|.++|+.+++.......
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~-~~--------------g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~ 275 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIAS-SQ--------------GMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNY 275 (419)
T ss_pred CCEEEEEECCCCcEEEEec-CC--------------CcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCCcEEEcccC
Confidence 4578888887776554433 33 5566788999 565 44454444 4677888877764433233
Q ss_pred CCCEEEEEEecCCcEEEEeCC--C--cEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccce
Q psy11036 84 GSPVESVLCLPSGGIFVTGGG--L--DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKT 159 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~~--~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~ 159 (239)
........|+|+|+.++..++ + .|.++|+. .++..+ +...... ...|+|+|+.++.......- .
T Consensus 276 ~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-~g~~~r-lt~~g~~--~~~~SPDG~~Ia~~~~~~~~-----~--- 343 (419)
T PRK04043 276 PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN-SGSVEQ-VVFHGKN--NSSVSTYKNYIVYSSRETNN-----E--- 343 (419)
T ss_pred CCccCccEECCCCCEEEEEECCCCCceEEEEECC-CCCeEe-CccCCCc--CceECCCCCEEEEEEcCCCc-----c---
Confidence 333445689999998877763 3 57777776 444322 2211111 24899999998877654210 0
Q ss_pred EeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCC---ceEEEEEccCCeeeEEec-CCCCeeee
Q psy11036 160 VSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD---HHAKIYEMVNFSPVHTLD-YPSPVLSI 235 (239)
Q Consensus 160 ~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~-~~~~v~~~ 235 (239)
...+..+|.+.|+.++.. ..+... .......|+|||+.++-.+.+ ..+.+.++.. .....+. .++.+...
T Consensus 344 --~~~~~~~I~v~d~~~g~~--~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g-~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 344 --FGKNTFNLYLISTNSDYI--RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY-NKSFLFPLKVGKIQSI 417 (419)
T ss_pred --cCCCCcEEEEEECCCCCe--EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC-CeeEEeecCCCccCCC
Confidence 000012234444433221 112211 122357899999987655432 2466777744 3333343 34555555
Q ss_pred Ee
Q psy11036 236 DV 237 (239)
Q Consensus 236 ~~ 237 (239)
+|
T Consensus 418 ~W 419 (419)
T PRK04043 418 DW 419 (419)
T ss_pred CC
Confidence 44
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-09 Score=91.80 Aligned_cols=170 Identities=12% Similarity=0.109 Sum_probs=113.6
Q ss_pred eEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec---------------CCCCEEEEEEecCCcEEEEeC--CCcE
Q psy11036 45 VRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN---------------HGSPVESVLCLPSGGIFVTGG--GLDV 107 (239)
Q Consensus 45 v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~~~~--~~~i 107 (239)
...++++|+++.++++.+.++.|++||..++......+ .-.....++++|++..++++. ++.|
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 45899999667777888888999999987764321111 012356799999998666555 5899
Q ss_pred EEEEccCCCeEEEEE-------------ec--------cCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecc
Q psy11036 108 CIWDMLGGGKLLHKF-------------TC--------HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGG 166 (239)
Q Consensus 108 ~~~d~~~~~~~~~~~-------------~~--------~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 166 (239)
++||+. ++...... .. .-.....++++++|+.+++-..++.|++||..+..+..+.|.
T Consensus 765 rv~D~~-tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 765 RALDLK-TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEECC-CCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence 999987 33221110 00 011236889999999888888999999999984444444332
Q ss_pred eeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCee
Q psy11036 167 LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 167 ~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
+..-.-| +.. ..+.-.....++++++|+++++-+.++.|++||+.+++.
T Consensus 844 G~~G~~d----G~~---~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 844 GKAGFKD----GKA---LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCcCCCC----Ccc---cccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1100000 110 122234567899999999999989999999999988765
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.9e-09 Score=79.80 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=93.7
Q ss_pred CCeEEEEEecCCCCEEEEeeCCC-eEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCC-CcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDK-TVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGG-LDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg-~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~i~~~d~~~~~~~~~ 120 (239)
+.|.-..+.. +++-++.|..|| .+-++|.++++.....+.-+.|.++..+|+|++++++.+ .++-++|+. ++....
T Consensus 360 ~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid-ngnv~~ 437 (668)
T COG4946 360 GGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID-NGNVRL 437 (668)
T ss_pred CceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec-CCCeeE
Confidence 6688888877 667888999999 899999998876665577889999999999999999996 889999998 555544
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCC----eEEEEEcccc
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDH----HAKIYEMTLK 158 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~----~i~i~d~~~~ 158 (239)
.-+...+-|+.+.|+|+++++|-+--+| .|+++|+.+.
T Consensus 438 idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 438 IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 4455667899999999999999876554 6889998743
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.5e-10 Score=81.90 Aligned_cols=213 Identities=12% Similarity=0.183 Sum_probs=143.5
Q ss_pred CCCEEEEeeCCCcc-----eeeeeeCCceeeccceeeccCCCCCeEEEEEecCC-CCEEEEeeCCCeEEEEeCCCCC---
Q psy11036 6 PILIVALWDIPSEA-----QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVS-SDIVISGSYDKTVNVYDTRSPD--- 76 (239)
Q Consensus 6 ~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~v~vw~~~~~~--- 76 (239)
.+|.|.++.-.... ...+++.|.+-. +...--.-..+|..+.|.++. ...++..+.|.+|++|.+....
T Consensus 45 kgGRVv~f~r~~~~~~ey~~~t~fqshepEF--DYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~ 122 (433)
T KOG1354|consen 45 KGGRVVLFEREKLYKGEYNFQTEFQSHEPEF--DYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK 122 (433)
T ss_pred CCCeEEEeecccccccceeeeeeeeccCccc--chhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc
Confidence 56888888643221 233444554110 000000112578899999843 2356667889999999875321
Q ss_pred --------------------------------ceeee--cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEE-
Q psy11036 77 --------------------------------PVMSV--NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHK- 121 (239)
Q Consensus 77 --------------------------------~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~- 121 (239)
+.+.+ .|...|.++.++.+...++++.|-.|.+|+++...+....
T Consensus 123 ~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIV 202 (433)
T KOG1354|consen 123 EGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIV 202 (433)
T ss_pred ccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEE
Confidence 11111 2667788999999999999999999999999854443332
Q ss_pred -Eecc-----CCceEEEEEcC-CCCEEEEEecCCeEEEEEcccceEeee-----------------------------e-
Q psy11036 122 -FTCH-----HKTVTSLCLAS-GGKRLISASLDHHAKIYEMTLKTVSSF-----------------------------T- 164 (239)
Q Consensus 122 -~~~~-----~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------------------------~- 164 (239)
++.+ ..-|++..|+| ..+.++-.+..|+|++.|++...+..- +
T Consensus 203 DIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~ 282 (433)
T KOG1354|consen 203 DIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH 282 (433)
T ss_pred EccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc
Confidence 2333 34689999999 457888899999999999982211110 1
Q ss_pred -c-------ceeEEEEEccCCCEEEEEEecccC------------cE---EEEEEccCCCeEEEEcCCceEEEEEccCC
Q psy11036 165 -G-------GLDVCIWDMLGGGKLLHKFTCHHK------------TV---TSLCLASGGKRLISASLDHHAKIYEMVNF 220 (239)
Q Consensus 165 -~-------~~~i~~~d~~~~~~~~~~~~~h~~------------~v---~~~~~s~~~~~l~s~s~d~~i~iwd~~~~ 220 (239)
| -..+.+||+....+++..++.|.. .| ..++|+-++.+++|||....+++|++..|
T Consensus 283 sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 283 SGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 1 133899999888888888877643 22 35788888899999999999999996544
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-08 Score=80.59 Aligned_cols=173 Identities=10% Similarity=-0.003 Sum_probs=105.2
Q ss_pred CCeEEEEEecCCCC-EEEEeeC---CCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC----CCcEEEEEccC
Q psy11036 43 DYVRAGTVSPVSSD-IVISGSY---DKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG----GLDVCIWDMLG 114 (239)
Q Consensus 43 ~~v~~~~~~~~~~~-~l~s~~~---dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~i~~~d~~~ 114 (239)
+......|+| +++ .++..+. +..|.++|+.+++........+......|+|+|+.++... +..|.++|+.
T Consensus 188 ~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~- 265 (419)
T PRK04043 188 GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN- 265 (419)
T ss_pred CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC-
Confidence 4567899999 565 3554333 3579999998887655545566677788999998776544 2568888876
Q ss_pred CCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEE
Q psy11036 115 GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSL 194 (239)
Q Consensus 115 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~ 194 (239)
.++ ...+..+........|+|||+.|+..+..+ +..+|.+.|+.++........+. ...
T Consensus 266 ~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~----------------g~~~Iy~~dl~~g~~~rlt~~g~----~~~ 324 (419)
T PRK04043 266 TKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRL----------------GYPNIFMKKLNSGSVEQVVFHGK----NNS 324 (419)
T ss_pred CCc-EEEcccCCCccCccEECCCCCEEEEEECCC----------------CCceEEEEECCCCCeEeCccCCC----cCc
Confidence 443 444544444344568999999887766431 11223344443322211111121 124
Q ss_pred EEccCCCeEEEEcCC---------ceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 195 CLASGGKRLISASLD---------HHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 195 ~~s~~~~~l~s~s~d---------~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.|+|||++|+..+.. ..|.+.|+.+++. ..+..........|+|
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SP 377 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSS 377 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECC
Confidence 899999988766543 3688889887764 3343233334566766
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-07 Score=73.83 Aligned_cols=219 Identities=12% Similarity=0.141 Sum_probs=136.6
Q ss_pred CCCCEEEEeeC--CCccee--eeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC----CCeEEEEeCCCC-
Q psy11036 5 LPILIVALWDI--PSEAQV--STFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY----DKTVNVYDTRSP- 75 (239)
Q Consensus 5 ~~dg~i~vwd~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----dg~v~vw~~~~~- 75 (239)
+..+.|++|++ ++++.. ..+... .....++++| ++++|.+... ++.|..|.+...
T Consensus 10 ~~~~gI~~~~~d~~~g~l~~~~~~~~~---------------~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~ 73 (345)
T PF10282_consen 10 GKGGGIYVFRFDEETGTLTLVQTVAEG---------------ENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDT 73 (345)
T ss_dssp SSSTEEEEEEEETTTTEEEEEEEEEES---------------SSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTT
T ss_pred CCCCcEEEEEEcCCCCCceEeeeecCC---------------CCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCc
Confidence 45688999988 444432 222222 5567889999 7788777665 579999998764
Q ss_pred Cce---eeec-CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEE--ec-----------cCCceEEEEEcC
Q psy11036 76 DPV---MSVN-HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKF--TC-----------HHKTVTSLCLAS 136 (239)
Q Consensus 76 ~~~---~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~--~~-----------~~~~i~~i~~~~ 136 (239)
..+ .... .......++++|++++++++. +|.+.++++...+...... .. ......++.++|
T Consensus 74 g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 74 GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP 153 (345)
T ss_dssp TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T
T ss_pred ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC
Confidence 222 2222 456667899999999999997 7999999998555544331 11 123568899999
Q ss_pred CCCEEEEEec-CCeEEEEEcc-cc-eEee---e------------------------ecceeEEEEEcc-CCCE--EEEE
Q psy11036 137 GGKRLISASL-DHHAKIYEMT-LK-TVSS---F------------------------TGGLDVCIWDML-GGGK--LLHK 183 (239)
Q Consensus 137 ~~~~l~~~~~-d~~i~i~d~~-~~-~~~~---~------------------------~~~~~i~~~d~~-~~~~--~~~~ 183 (239)
+++++++... ...|.+|+++ .. .+.. + ..+..|.+++.. ..+. .+..
T Consensus 154 dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 154 DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 9998877653 4589999987 22 1211 1 113336666665 2222 2222
Q ss_pred Eecc------cCcEEEEEEccCCCeEEEEc-CCceEEEEEcc--CC--eeeEEecC-CCCeeeeEecC
Q psy11036 184 FTCH------HKTVTSLCLASGGKRLISAS-LDHHAKIYEMV--NF--SPVHTLDY-PSPVLSIDVSM 239 (239)
Q Consensus 184 ~~~h------~~~v~~~~~s~~~~~l~s~s-~d~~i~iwd~~--~~--~~~~~~~~-~~~v~~~~~sp 239 (239)
.... ......++++|||++|.++. .+..|.+|++. ++ +.+..+.. ......++++|
T Consensus 234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~ 301 (345)
T PF10282_consen 234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP 301 (345)
T ss_dssp EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T
T ss_pred eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC
Confidence 2211 12578899999999987654 57789999993 23 34445553 44578888875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.3e-09 Score=74.69 Aligned_cols=156 Identities=10% Similarity=0.017 Sum_probs=110.1
Q ss_pred CEEEEeeCCCeEEEEeCCCCCceeeec-CCCCEEEEEEecCCcEEEEeCC-CcEEEEEccCCCeEEEEE--eccCCceEE
Q psy11036 56 DIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGGG-LDVCIWDMLGGGKLLHKF--TCHHKTVTS 131 (239)
Q Consensus 56 ~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-~~i~~~d~~~~~~~~~~~--~~~~~~i~~ 131 (239)
--+..++.|.++++.++.-+....... ..-.+..++++++++++++.+| ..|..|.+...++.+... ..-...-.+
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred cceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence 345567888888888876554333331 1134889999999999999996 889999998666555442 223344567
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC--eEEEEcC
Q psy11036 132 LCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK--RLISASL 208 (239)
Q Consensus 132 i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~ 208 (239)
.+|+.....+|++..||++.|||++ ....... .-..-..|.+++..+.|++.|. +|+-.-.
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~----------------~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh 272 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE----------------ISSTRPHHNGAFRVCRFSLYGLLDLLFISEH 272 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhh----------------hcccCCCCCCceEEEEecCCCcceEEEEecC
Confidence 8899999999999999999999998 1111100 0111234889999999998653 4555555
Q ss_pred CceEEEEEccCCeeeEEec
Q psy11036 209 DHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 209 d~~i~iwd~~~~~~~~~~~ 227 (239)
-+.+.+-|+++++..+.+.
T Consensus 273 fs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 273 FSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred cceEEEEEcccCceeeEEe
Confidence 6789999999988766654
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-09 Score=85.62 Aligned_cols=114 Identities=25% Similarity=0.425 Sum_probs=88.1
Q ss_pred CCeEEEEEecCCCCEEEE-eeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC----CCcEEEEEccCCCe
Q psy11036 43 DYVRAGTVSPVSSDIVIS-GSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG----GLDVCIWDMLGGGK 117 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s-~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~i~~~d~~~~~~ 117 (239)
++|.++.|+|.+.++.++ |-.-..+.++|++ +.++..++ +++=.++-|+|.|++++.++ .|.+.+||.. ..+
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~-n~K 347 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP-NRK 347 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEecc-chh
Confidence 899999999943344333 4456789999986 56666653 56678899999999999888 3899999998 677
Q ss_pred EEEEEeccCCceEEEEEcCCCCEEEEEec------CCeEEEEEcccceEe
Q psy11036 118 LLHKFTCHHKTVTSLCLASGGKRLISASL------DHHAKIYEMTLKTVS 161 (239)
Q Consensus 118 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~ 161 (239)
.+..+..... +-+.|+|||.+|++++. |+.++||+..+..+.
T Consensus 348 ~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 348 LIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred hccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 7877775443 55899999999999875 678889998755443
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-09 Score=79.71 Aligned_cols=185 Identities=21% Similarity=0.264 Sum_probs=137.1
Q ss_pred eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCC-CCCceeee--cCCCCEEEEEEecCC
Q psy11036 20 QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTR-SPDPVMSV--NHGSPVESVLCLPSG 96 (239)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~--~~~~~v~~~~~~~~~ 96 (239)
.++.+++|. +.++....-| ..+-+++.+.|.++|+|--+ .++.-..+ ..+.+++++.+.++.
T Consensus 16 ll~~~eG~~--------------d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~ 80 (404)
T KOG1409|consen 16 LLSKIEGSQ--------------DDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES 80 (404)
T ss_pred hhhhhcCch--------------hhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc
Confidence 455667776 8888888888 78889999999999999644 45544444 357889999999999
Q ss_pred cEEEEeC-CCcEEEEEccCC---CeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee--------
Q psy11036 97 GIFVTGG-GLDVCIWDMLGG---GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF-------- 163 (239)
Q Consensus 97 ~~l~~~~-~~~i~~~d~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~-------- 163 (239)
..|+++- .|++.-+.+... ....+....|...+..+.|+....++++.+.|..+.--..+ +..+..+
T Consensus 81 ~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~ 160 (404)
T KOG1409|consen 81 RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASA 160 (404)
T ss_pred eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCC
Confidence 9999988 588888766432 22344556799999999999888999999999877655444 3333222
Q ss_pred ---------ec----ceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCC
Q psy11036 164 ---------TG----GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNF 220 (239)
Q Consensus 164 ---------~~----~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~ 220 (239)
.| ...+.-.+. +...++..+.+|...+.+++|.|..+.|++|..|..+.+||+.-.
T Consensus 161 ~~~d~~~~fvGd~~gqvt~lr~~~-~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 161 LQFDALYAFVGDHSGQITMLKLEQ-NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred CceeeEEEEecccccceEEEEEee-cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence 11 111111111 235677888999999999999999999999999999999999543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-07 Score=69.19 Aligned_cols=193 Identities=16% Similarity=0.189 Sum_probs=126.1
Q ss_pred CCeEEEEEecCCCCEEEEeeC-CCeEEEEeCCC-CCc---eeeecCCCC----------EEEEEEecCCcEEEEeC--CC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSY-DKTVNVYDTRS-PDP---VMSVNHGSP----------VESVLCLPSGGIFVTGG--GL 105 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~-dg~v~vw~~~~-~~~---~~~~~~~~~----------v~~~~~~~~~~~l~~~~--~~ 105 (239)
.+-+-+++++ ++++++++.. .|.|.++-+.. |.. +..+.|.+. +....+.|+++++++.. ..
T Consensus 89 ~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 89 SPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence 3447899999 7888887765 47899999865 432 223345444 78889999999999988 47
Q ss_pred cEEEEEccCCCeEE----EEEeccCCceEEEEEcCCCCEEEEEe-cCCeEEEEEccc--ceEeee---------------
Q psy11036 106 DVCIWDMLGGGKLL----HKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMTL--KTVSSF--------------- 163 (239)
Q Consensus 106 ~i~~~d~~~~~~~~----~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~--~~~~~~--------------- 163 (239)
.|.+|++. .++.. ..++ ....-..|.|+|++++..... -+++|.+|..+. ..+..+
T Consensus 168 ri~~y~~~-dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 168 RIFLYDLD-DGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred eEEEEEcc-cCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 79999998 44422 1223 234558899999999877655 489999999882 333222
Q ss_pred -----------------ecceeEEEEEccCCCEEEE---EEecccCcEEEEEEccCCCeEEEEcCC-ceEEEEEc--cCC
Q psy11036 164 -----------------TGGLDVCIWDMLGGGKLLH---KFTCHHKTVTSLCLASGGKRLISASLD-HHAKIYEM--VNF 220 (239)
Q Consensus 164 -----------------~~~~~i~~~d~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~s~d-~~i~iwd~--~~~ 220 (239)
-|...|.++-+......+. ....+....+...|+|.|++|+.+..+ ..|.+|.. ++|
T Consensus 246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 1233366665554322222 222344456788999999999888764 46888876 456
Q ss_pred eeeEEec--CCCCeeeeEec
Q psy11036 221 SPVHTLD--YPSPVLSIDVS 238 (239)
Q Consensus 221 ~~~~~~~--~~~~v~~~~~s 238 (239)
++-.... ......++.|.
T Consensus 326 ~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 326 RLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred eEEecccccCCCCcEEEEEc
Confidence 5543332 33445566554
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.9e-09 Score=83.41 Aligned_cols=151 Identities=14% Similarity=0.065 Sum_probs=93.1
Q ss_pred eEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--C--CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEE
Q psy11036 66 TVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--G--LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141 (239)
Q Consensus 66 ~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 141 (239)
.|.++|...+.......+...+....|+|+|+.++..+ + ..|.+||+. +++.. .+....+.+...+|+|||+.|
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~-~g~~~-~l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD-TGRRE-QITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECC-CCCEE-EccCCCCCcCCeEECCCCCEE
Confidence 47778887655544446777899999999999887765 2 358889997 44432 333334455678999999988
Q ss_pred EE-EecCC--eEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC-Cc--eEEEE
Q psy11036 142 IS-ASLDH--HAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL-DH--HAKIY 215 (239)
Q Consensus 142 ~~-~~~d~--~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-d~--~i~iw 215 (239)
+. ...++ .|.++|+. + ++ ...+..+........|+|||+.|+..+. ++ .|+++
T Consensus 258 a~~~~~~g~~~Iy~~d~~-------------------~-~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLA-------------------S-RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred EEEEccCCCceEEEEECC-------------------C-CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 74 44444 35555555 2 11 1222334444566789999998765553 33 57777
Q ss_pred EccCCeeeEEecCCCCeeeeEecC
Q psy11036 216 EMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 216 d~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
++.+++..............+|+|
T Consensus 317 d~~~g~~~~lt~~~~~~~~~~~Sp 340 (430)
T PRK00178 317 NVNGGRAERVTFVGNYNARPRLSA 340 (430)
T ss_pred ECCCCCEEEeecCCCCccceEECC
Confidence 887776433221222233445554
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-08 Score=75.95 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=114.9
Q ss_pred EecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CC-cEEEEEccCCCeEEEEEeccCC
Q psy11036 50 VSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GL-DVCIWDMLGGGKLLHKFTCHHK 127 (239)
Q Consensus 50 ~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~-~i~~~d~~~~~~~~~~~~~~~~ 127 (239)
|++.++++++..|. |...+.+...+ ....+++.+.|.-..+.-+++-++.|. || .+-+||.+ +...+.+...-+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~-~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~--~~e~kr~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDG-YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD--GGEVKRIEKDLG 402 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCC-eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecC--CceEEEeeCCcc
Confidence 45557888888876 67777776544 444557788888888887777777777 65 79999996 445566666788
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEc
Q psy11036 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS 207 (239)
Q Consensus 128 ~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 207 (239)
.|.++..+|+|+.++++.....+.+.|++ ++.....-+...+-|+...|||+++++|-+-
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vidid--------------------ngnv~~idkS~~~lItdf~~~~nsr~iAYaf 462 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDID--------------------NGNVRLIDKSEYGLITDFDWHPNSRWIAYAF 462 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEec--------------------CCCeeEecccccceeEEEEEcCCceeEEEec
Confidence 99999999999999999888888888877 1222222233456799999999999999887
Q ss_pred CCc----eEEEEEccCCeeeEEe
Q psy11036 208 LDH----HAKIYEMVNFSPVHTL 226 (239)
Q Consensus 208 ~d~----~i~iwd~~~~~~~~~~ 226 (239)
-+| .|++||+.+++....-
T Consensus 463 P~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 463 PEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred CcceeeeeEEEEecCCCeEEEec
Confidence 665 6899999888766543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=59.45 Aligned_cols=38 Identities=24% Similarity=0.452 Sum_probs=36.0
Q ss_pred EEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEE
Q psy11036 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 179 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
+++..+.+|.+.|.+++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788899999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.7e-08 Score=70.52 Aligned_cols=181 Identities=10% Similarity=0.125 Sum_probs=114.0
Q ss_pred CeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec--------CCCCEEEEEEecCC-------cEEEEeCCCcEE
Q psy11036 44 YVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN--------HGSPVESVLCLPSG-------GIFVTGGGLDVC 108 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--------~~~~v~~~~~~~~~-------~~l~~~~~~~i~ 108 (239)
.-+-++|+| ++.+|+.+...|+|+++|+.. ..+..+. ....|..+.|.+.. .+++..-.|.++
T Consensus 45 QWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 45 QWRKLAWSP-DCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred hheEEEECC-CCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 467899999 899999999999999999874 3333331 23456667665422 355555577777
Q ss_pred EEEcc----CCCeEEEEEe---ccCCceEEEEEcCCCCEEEEEecCC-----------eEEEEEcc-cceEeee--ecce
Q psy11036 109 IWDML----GGGKLLHKFT---CHHKTVTSLCLASGGKRLISASLDH-----------HAKIYEMT-LKTVSSF--TGGL 167 (239)
Q Consensus 109 ~~d~~----~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~-----------~i~i~d~~-~~~~~~~--~~~~ 167 (239)
-|-+. ...+..+.+. .+...|.++.++|..+.|++|+... -+..|.+- +...... ..+.
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~ 202 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED 202 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc
Confidence 66642 1233334433 2467899999999988888776432 13344432 1111110 1111
Q ss_pred e-------EEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 168 D-------VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 168 ~-------i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
+ ..++.+.+ .............|..|..||||+.||+...+|.|.+|++.+.++.++..
T Consensus 203 ~~~~~~~~~~~~~~~~-~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 203 DITASSKRRGLLRIPS-FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred cccccccccceeeccc-eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 1 12222211 11111112235679999999999999999999999999999988887776
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.2e-09 Score=73.86 Aligned_cols=164 Identities=10% Similarity=-0.006 Sum_probs=107.8
Q ss_pred CCEEEEeeCCCeEEEEeCCCCCceeee--cCCCCEEEEEE--ecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCC--c
Q psy11036 55 SDIVISGSYDKTVNVYDTRSPDPVMSV--NHGSPVESVLC--LPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHK--T 128 (239)
Q Consensus 55 ~~~l~s~~~dg~v~vw~~~~~~~~~~~--~~~~~v~~~~~--~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~ 128 (239)
..+|+.|+..|...+|...+.+....+ .+...|+-+.- ....+.+++..|.++++.++.. + ..... .|.. .
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~-~-s~~~~-~h~~~~~ 160 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG-D-SNKFA-VHNQNLT 160 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEec-C-cccce-eeccccc
Confidence 457889999999999999876543333 23332322111 1123455555588888887752 2 11111 1322 3
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEE-EEecccCcEEEEEEccCCCeEEEEc
Q psy11036 129 VTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLH-KFTCHHKTVTSLCLASGGKRLISAS 207 (239)
Q Consensus 129 i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s 207 (239)
+.+++++++++++++.+....|..|.++.+ ....+. .....+..-.+..|+.....+|++.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~------------------sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~ 222 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDE------------------SEYIENIYEAPTSDHGFYNSFSENDLQFAVVF 222 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCc------------------cceeeeeEecccCCCceeeeeccCcceEEEEe
Confidence 788999999999999999999999988711 111111 1222334456778999999999999
Q ss_pred CCceEEEEEccCCeee-EEe----c-CCCCeeeeEecC
Q psy11036 208 LDHHAKIYEMVNFSPV-HTL----D-YPSPVLSIDVSM 239 (239)
Q Consensus 208 ~d~~i~iwd~~~~~~~-~~~----~-~~~~v~~~~~sp 239 (239)
.||.+.|||++..... ... + |.+.+..+.|+|
T Consensus 223 Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl 260 (344)
T KOG4532|consen 223 QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL 260 (344)
T ss_pred cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC
Confidence 9999999999875432 222 1 778899998885
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.6e-08 Score=71.37 Aligned_cols=200 Identities=16% Similarity=0.109 Sum_probs=121.4
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSP 86 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~ 86 (239)
+|.|..||..+|+.+........ .....+.... .+..+++++.++.|..||..+++.+..+....+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~------------~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~ 67 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG------------IGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP 67 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS------------CSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC
T ss_pred CCEEEEEECCCCCEEEEEECCCC------------CCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc
Confidence 68999999999999888765210 0233322332 355666778999999999999998877743333
Q ss_pred EEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEE-eccCC---ceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEe
Q psy11036 87 VESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKF-TCHHK---TVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVS 161 (239)
Q Consensus 87 v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~-~~~~~---~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~ 161 (239)
+.......++..++...++.+..+|.+ +++.+.+. ..... .........++..++.+..++.+..+|.+ ++.+.
T Consensus 68 ~~~~~~~~~~~v~v~~~~~~l~~~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 68 ISGAPVVDGGRVYVGTSDGSLYALDAK-TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp GGSGEEEETTEEEEEETTSEEEEEETT-TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred ccceeeecccccccccceeeeEecccC-CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence 322223335555555567899999987 77777663 32211 11222233347788888889999999987 55543
Q ss_pred eeec-------------------------------ceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc
Q psy11036 162 SFTG-------------------------------GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH 210 (239)
Q Consensus 162 ~~~~-------------------------------~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~ 210 (239)
.... .+.+..+|..+.... .... ...+..+ ...++..|+.++.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~-w~~~--~~~~~~~-~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 147 KYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKL-WSKP--ISGIYSL-PSVDGGTLYVTSSDG 222 (238)
T ss_dssp EEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEE-EEEC--SS-ECEC-EECCCTEEEEEETTT
T ss_pred EeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEE-EEec--CCCccCC-ceeeCCEEEEEeCCC
Confidence 3311 111122244443222 2221 1222221 345677788777999
Q ss_pred eEEEEEccCCeeeEE
Q psy11036 211 HAKIYEMVNFSPVHT 225 (239)
Q Consensus 211 ~i~iwd~~~~~~~~~ 225 (239)
.|..||+++|+.+.+
T Consensus 223 ~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 223 RLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEEECCCCCEEeE
Confidence 999999999998754
|
... |
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-10 Score=90.05 Aligned_cols=166 Identities=16% Similarity=0.220 Sum_probs=115.7
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC-------Cceeee-cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP-------DPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLG 114 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~ 114 (239)
..|+.++--. +.+-+++++.|++|++|.++.. .+..++ .|+.+|..+.|-.+.++++ ..|+.|++||.-
T Consensus 736 ~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~-ScD~giHlWDPF- 812 (1034)
T KOG4190|consen 736 EKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA-SCDGGIHLWDPF- 812 (1034)
T ss_pred HHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee-eccCcceeeccc-
Confidence 8888887666 7889999999999999998632 244445 5999999999998776664 457889999986
Q ss_pred CCeEEEEEec--cCCceEEEEEcC--CCCEEEEE-ecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEeccc
Q psy11036 115 GGKLLHKFTC--HHKTVTSLCLAS--GGKRLISA-SLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH 188 (239)
Q Consensus 115 ~~~~~~~~~~--~~~~i~~i~~~~--~~~~l~~~-~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~ 188 (239)
.++++..+.. ..+.+..+..-+ +...++++ +...+|+++|.+ .+...++ .+....+..
T Consensus 813 igr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~----------------kVcna~~Pn 876 (1034)
T KOG4190|consen 813 IGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL----------------KVCNAPGPN 876 (1034)
T ss_pred ccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeE----------------EeccCCCCc
Confidence 5555543321 122223333323 33444444 778999999988 2221111 011113345
Q ss_pred CcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 189 KTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 189 ~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
..+.+++..+.|++|+.+-..|.|.+.|.++|+.+..+.
T Consensus 877 a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 668899999999999999999999999999999887543
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=82.07 Aligned_cols=143 Identities=14% Similarity=0.167 Sum_probs=97.3
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCE-----EEEEEecCCcEEEEeC------CCcEEEEEccCCCeEEEEE
Q psy11036 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPV-----ESVLCLPSGGIFVTGG------GLDVCIWDMLGGGKLLHKF 122 (239)
Q Consensus 54 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~------~~~i~~~d~~~~~~~~~~~ 122 (239)
-++.++++..||.+.+.+.+.- ..+.+..++ .+.+....+..+.+++ -+..+.|+++..+..+...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~---~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKD---LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred cCCceEecCCCceEEEEechHH---HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence 4577899999999999998752 222222211 1223333455665554 2556677776222222222
Q ss_pred eccCCceEEEEEcCCC-CEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CC
Q psy11036 123 TCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GG 200 (239)
Q Consensus 123 ~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~ 200 (239)
+. ...|++++-+|.. +.+++|+.||.+.+||.+ +...+...+..|+.++..+-|+| ++
T Consensus 177 ~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~r-------------------n~~~p~S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 177 KA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDAR-------------------NVAMPVSLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred cc-cccchhhhCCcccccEEEEecCCCeEEEEEcc-------------------cccchHHHHHHhhhhhhheeccCCCc
Confidence 22 2348999999954 567788889999999988 22344555688999999999999 67
Q ss_pred CeEEEEcCCceEEEEEccC
Q psy11036 201 KRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 201 ~~l~s~s~d~~i~iwd~~~ 219 (239)
..|++++.||.+..||..+
T Consensus 237 ~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 237 EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hheeEecCCCcEEEEcCCC
Confidence 8999999999999999763
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-07 Score=71.65 Aligned_cols=173 Identities=12% Similarity=0.057 Sum_probs=117.5
Q ss_pred CeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCC-----------CcEEEEEccCCCeEEEEEeccCC------
Q psy11036 65 KTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGG-----------LDVCIWDMLGGGKLLHKFTCHHK------ 127 (239)
Q Consensus 65 g~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------~~i~~~d~~~~~~~~~~~~~~~~------ 127 (239)
++|.+.|..+++.+.++........+ ++|+++.++++.. +.|.+||.. +.+.+.++.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~-t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ-THLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc-cCcEEeEEccCCCchhhcc
Confidence 89999999999988888543333445 9999998876643 779999999 8888877764222
Q ss_pred -ceEEEEEcCCCCEEEEEe-c-CCeEEEEEcc-cceEeee-------------------ec-------------------
Q psy11036 128 -TVTSLCLASGGKRLISAS-L-DHHAKIYEMT-LKTVSSF-------------------TG------------------- 165 (239)
Q Consensus 128 -~i~~i~~~~~~~~l~~~~-~-d~~i~i~d~~-~~~~~~~-------------------~~------------------- 165 (239)
....++++|||++|+... . ++.|.+.|+. .+.+.++ ++
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 234789999999988766 3 6899999998 5544443 00
Q ss_pred -----------------------------ceeEEEEEccCC----CEEEEEEec-------ccCcEEEEEEccCCCeEEE
Q psy11036 166 -----------------------------GLDVCIWDMLGG----GKLLHKFTC-------HHKTVTSLCLASGGKRLIS 205 (239)
Q Consensus 166 -----------------------------~~~i~~~d~~~~----~~~~~~~~~-------h~~~v~~~~~s~~~~~l~s 205 (239)
.+.+.+.|+... .+....+.. ..+.+.-++++|+++.++.
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV 264 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYL 264 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEE
Confidence 011222221110 000111000 1122334899999988877
Q ss_pred Ec----------CCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 206 AS----------LDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 206 ~s----------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.. ..+.|.++|..+++.+..+.....+..++++|
T Consensus 265 ~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~ 308 (352)
T TIGR02658 265 LADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQ 308 (352)
T ss_pred EecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECC
Confidence 42 22589999999999999999888999999987
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-09 Score=87.20 Aligned_cols=213 Identities=11% Similarity=0.047 Sum_probs=145.6
Q ss_pred CCCCCEEEEeeCCCcc---------------eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEE
Q psy11036 4 DLPILIVALWDIPSEA---------------QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVN 68 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~ 68 (239)
.|.||.+++..+.+.. .-+++.+|. +.|..+.|+. +.+.|-+...+|.|.
T Consensus 32 gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~--------------~sV~vvTWNe-~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 32 GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN--------------ASVMVVTWNE-NNQKLTTSDTSGLII 96 (1189)
T ss_pred ccccceeEEEEccccCCcccccccccccccchhhhhccCc--------------ceEEEEEecc-ccccccccCCCceEE
Confidence 4788989888765421 123566676 9999999998 788899999999999
Q ss_pred EEeCCCCCceeee---cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE-EEEeccCCceEEEEEcCCCCEEEE
Q psy11036 69 VYDTRSPDPVMSV---NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL-HKFTCHHKTVTSLCLASGGKRLIS 143 (239)
Q Consensus 69 vw~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~ 143 (239)
+|-+-++.....+ ..++-|.+++|..+|..++..- ||.|.+=.++ ..+.. +.+++ .....+.|++|.+.++.
T Consensus 97 VWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg--~~l~hv~ws~D~~~~Lf 173 (1189)
T KOG2041|consen 97 VWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKG--QLLAHVLWSEDLEQALF 173 (1189)
T ss_pred EEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcch--heccceeecccHHHHHh
Confidence 9999888765544 4677899999999999988777 8888887775 22222 22222 23446889999998888
Q ss_pred EecCCeEEEEEcccc--------eEeeeeccee-----E--EEEEc---------------------------cCCCEEE
Q psy11036 144 ASLDHHAKIYEMTLK--------TVSSFTGGLD-----V--CIWDM---------------------------LGGGKLL 181 (239)
Q Consensus 144 ~~~d~~i~i~d~~~~--------~~~~~~~~~~-----i--~~~d~---------------------------~~~~~~~ 181 (239)
+-..|.+.++|.++. +....+|... | .-|.. .++.+++
T Consensus 174 ~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv 253 (1189)
T KOG2041|consen 174 KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV 253 (1189)
T ss_pred hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence 889999999998722 2222222111 0 01111 1111122
Q ss_pred EEEecccCcEEEEEEccCCCeEEEEcCCc---------eEEEEEccCCeeeEEec-CCCCeeeeEe
Q psy11036 182 HKFTCHHKTVTSLCLASGGKRLISASLDH---------HAKIYEMVNFSPVHTLD-YPSPVLSIDV 237 (239)
Q Consensus 182 ~~~~~h~~~v~~~~~s~~~~~l~s~s~d~---------~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 237 (239)
..-. ...+..+.|+++|..|+.++.|. .|.+|. .-|+.+.+++ ....|++++|
T Consensus 254 v~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 254 VVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSW 316 (1189)
T ss_pred EEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEE
Confidence 1111 24578889999999999988643 466664 3578888888 4457888888
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-10 Score=84.31 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=83.2
Q ss_pred EeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCC
Q psy11036 60 SGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG 138 (239)
Q Consensus 60 s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~ 138 (239)
.++....+.+|....+.+...++|-..++.++++||+++++++. |..|++-........-.-.-+|..-|..++.-++
T Consensus 127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~- 205 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN- 205 (390)
T ss_pred ecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-
Confidence 34555667777777677777789999999999999999999999 8999998887343333344579999999999754
Q ss_pred CEEEEEecCCeEEEEEcc-cceEeee
Q psy11036 139 KRLISASLDHHAKIYEMT-LKTVSSF 163 (239)
Q Consensus 139 ~~l~~~~~d~~i~i~d~~-~~~~~~~ 163 (239)
..|++++.|+++++||+. ++.+.++
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred ceeeecCCCCcEEEEecccCCccccc
Confidence 568999999999999999 7777665
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.7e-08 Score=71.61 Aligned_cols=183 Identities=13% Similarity=0.127 Sum_probs=121.3
Q ss_pred CCCCEEEEeeCCCc--cee-eeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC---CCeEEEEeCCC--CC
Q psy11036 5 LPILIVALWDIPSE--AQV-STFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY---DKTVNVYDTRS--PD 76 (239)
Q Consensus 5 ~~dg~i~vwd~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~v~vw~~~~--~~ 76 (239)
+....|++|++++. +.. ..+-... +..+-++|+| +++.|.++.. +|.|..|.+.. |+
T Consensus 13 ~~s~gI~v~~ld~~~g~l~~~~~v~~~--------------~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~ 77 (346)
T COG2706 13 RESQGIYVFNLDTKTGELSLLQLVAEL--------------GNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGR 77 (346)
T ss_pred cCCCceEEEEEeCcccccchhhhcccc--------------CCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCe
Confidence 45678999998743 221 1112233 7788999999 7777777654 46777777764 43
Q ss_pred ceee--e-cCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEE--EEeccCCc----------eEEEEEcCCCC
Q psy11036 77 PVMS--V-NHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLH--KFTCHHKT----------VTSLCLASGGK 139 (239)
Q Consensus 77 ~~~~--~-~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~--~~~~~~~~----------i~~i~~~~~~~ 139 (239)
.... . ....+.+.++.++++++++++. .|.|.++.++..+.+.. .+..|.+. +....+.|+++
T Consensus 78 Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~ 157 (346)
T COG2706 78 LTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR 157 (346)
T ss_pred EEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC
Confidence 3221 1 1334448899999999999998 59999999975544332 22235444 78889999999
Q ss_pred EEEEEec-CCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEc-CCceEEEEEc
Q psy11036 140 RLISASL-DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEM 217 (239)
Q Consensus 140 ~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~d~~i~iwd~ 217 (239)
+|++... --.|.+|++....+. ......+ .....-+.|.|+|++++....+ -+++|-+|+.
T Consensus 158 ~l~v~DLG~Dri~~y~~~dg~L~----------------~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y 220 (346)
T COG2706 158 YLVVPDLGTDRIFLYDLDDGKLT----------------PADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEY 220 (346)
T ss_pred EEEEeecCCceEEEEEcccCccc----------------ccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEE
Confidence 9988764 245777777611100 0111112 2345678999999999987666 4899999998
Q ss_pred cC
Q psy11036 218 VN 219 (239)
Q Consensus 218 ~~ 219 (239)
..
T Consensus 221 ~~ 222 (346)
T COG2706 221 NP 222 (346)
T ss_pred cC
Confidence 76
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.4e-10 Score=87.35 Aligned_cols=181 Identities=17% Similarity=0.220 Sum_probs=124.1
Q ss_pred CCCCCCCCEEEEeeCCCc-------ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCC
Q psy11036 1 MSHDLPILIVALWDIPSE-------AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTR 73 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 73 (239)
|...++|++|++|.++.. .+..++..|+ .+|.++.|-. +.+.+++ .||-+.+||.-
T Consensus 750 FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk--------------k~i~~igfL~-~lr~i~S--cD~giHlWDPF 812 (1034)
T KOG4190|consen 750 FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK--------------KPIHDIGFLA-DLRSIAS--CDGGIHLWDPF 812 (1034)
T ss_pred eeeccCCceEEEEEeccccCccccceeeeEhhhcc--------------Ccccceeeee-ccceeee--ccCcceeeccc
Confidence 456688999999998642 2456778888 9999999998 6666664 57899999988
Q ss_pred CCCceeee---cCCCCEEEEEEecC--CcEEEEeC--CCcEEEEEccCCCeEEEEEe-----ccCCceEEEEEcCCCCEE
Q psy11036 74 SPDPVMSV---NHGSPVESVLCLPS--GGIFVTGG--GLDVCIWDMLGGGKLLHKFT-----CHHKTVTSLCLASGGKRL 141 (239)
Q Consensus 74 ~~~~~~~~---~~~~~v~~~~~~~~--~~~l~~~~--~~~i~~~d~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~l 141 (239)
-+++...+ ...+.+..+..-|+ ...+.++. ..+|+++|.+ ..+....++ +.+..+.+++..+.|+++
T Consensus 813 igr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR-sce~~~E~kVcna~~Pna~~R~iaVa~~GN~l 891 (1034)
T KOG4190|consen 813 IGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR-SCEWTCELKVCNAPGPNALTRAIAVADKGNKL 891 (1034)
T ss_pred ccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecc-cccceeeEEeccCCCCchheeEEEeccCcchh
Confidence 88776654 23445555555554 44555553 5899999998 655554444 344568999999999999
Q ss_pred EEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEE-EEccC
Q psy11036 142 ISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI-YEMVN 219 (239)
Q Consensus 142 ~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~i-wd~~~ 219 (239)
+++-..|.|.+.|.+ ++.+.++ +.-.-....++ .|..+.|+....|.++.+ |..-.
T Consensus 892 Aa~LSnGci~~LDaR~G~vINsw---------------------rpmecdllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 892 AAALSNGCIAILDARNGKVINSW---------------------RPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred hHHhcCCcEEEEecCCCceeccC---------------------Ccccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 999999999999998 4433333 22222222222 355566666666777766 65544
Q ss_pred Ce
Q psy11036 220 FS 221 (239)
Q Consensus 220 ~~ 221 (239)
+.
T Consensus 950 gi 951 (1034)
T KOG4190|consen 950 GI 951 (1034)
T ss_pred Ce
Confidence 43
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-08 Score=75.75 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=129.0
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCC---------------eEEEEeC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDK---------------TVNVYDT 72 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---------------~v~vw~~ 72 (239)
..|.+|.-.....+..+.. ..|..+.|+| ++.+|.+-+..+ .+.+||.
T Consensus 53 ~~V~~~~g~~~~~l~~~~~----------------~~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~ 115 (561)
T COG5354 53 AGVECWGGPSKAKLVRFRH----------------PDVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDI 115 (561)
T ss_pred cceEEccccchhheeeeec----------------CCceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEec
Confidence 5688888777665555543 4589999999 899999865443 4999999
Q ss_pred CCCCceeeec-CCCC--EE-EEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEecc-CCceEEEEEcCCCC--EEEE--
Q psy11036 73 RSPDPVMSVN-HGSP--VE-SVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCH-HKTVTSLCLASGGK--RLIS-- 143 (239)
Q Consensus 73 ~~~~~~~~~~-~~~~--v~-~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~--~l~~-- 143 (239)
.++..+..+. ...+ .. -+.|+-+..+++-.....+.++++. ..-....+... ...|...+|+|.++ .|+.
T Consensus 116 ~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t-~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~t 194 (561)
T COG5354 116 ASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEIT-DNIEEHPFKNLRPVGILDFSISPEGNHDELAYWT 194 (561)
T ss_pred cCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecC-CccccCchhhccccceeeEEecCCCCCceEEEEc
Confidence 9999888873 2222 33 5788888888776667789999974 22212222211 35788899999643 3443
Q ss_pred ---EecCCeEEEEEcc-cceEeee---------------------------------ecceeEEEEEccCCCEEEEEEec
Q psy11036 144 ---ASLDHHAKIYEMT-LKTVSSF---------------------------------TGGLDVCIWDMLGGGKLLHKFTC 186 (239)
Q Consensus 144 ---~~~d~~i~i~d~~-~~~~~~~---------------------------------~~~~~i~~~d~~~~~~~~~~~~~ 186 (239)
.+.++++++|.+. +..+.+- -|..++++++++...-++. ..
T Consensus 195 PEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~--~~ 272 (561)
T COG5354 195 PEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE--KD 272 (561)
T ss_pred cccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccccee--cc
Confidence 4567889999887 3332221 1345577777764222222 24
Q ss_pred ccCcEEEEEEccCCCeEEEEc--CCceEEEEEccCC
Q psy11036 187 HHKTVTSLCLASGGKRLISAS--LDHHAKIYEMVNF 220 (239)
Q Consensus 187 h~~~v~~~~~s~~~~~l~s~s--~d~~i~iwd~~~~ 220 (239)
-.++|...+|.|.++.+++.+ .+-.+.++|++..
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeecccccc
Confidence 578999999999888776554 5778888888654
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=77.29 Aligned_cols=130 Identities=13% Similarity=0.135 Sum_probs=86.6
Q ss_pred CCEEEEEEecCCcEEE-EeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEEcccceEe
Q psy11036 85 SPVESVLCLPSGGIFV-TGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMTLKTVS 161 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~-~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~ 161 (239)
..|.+++-+|..+.++ +|+ +|.+.+||.++...+...++.|+.++..+-|+| ++..|+++++||.+..||..+..+.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~ 259 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS 259 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE
Confidence 4489999999655554 444 699999999966667777889999999999999 5689999999999999998854443
Q ss_pred eeecceeEEEEEccCCCEE---EEE-EecccCcEEEEEEccCCCeEEEEcCCceEEEEE
Q psy11036 162 SFTGGLDVCIWDMLGGGKL---LHK-FTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 162 ~~~~~~~i~~~d~~~~~~~---~~~-~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
.-.-...+..|--....+. +.. +..-...|.++.. -|..|++|+.-+-|++++
T Consensus 260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ecCccccccccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence 2111111333321111111 111 1112233444443 478899999888898875
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=56.62 Aligned_cols=38 Identities=24% Similarity=0.452 Sum_probs=36.2
Q ss_pred eEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEE
Q psy11036 117 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 154 (239)
Q Consensus 117 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d 154 (239)
+++.++.+|.++|.+++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-07 Score=79.33 Aligned_cols=196 Identities=11% Similarity=0.063 Sum_probs=127.3
Q ss_pred CCCCeEEEEEecCCCCEEEEeeCCCeEEEE----eCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccC-
Q psy11036 41 PQDYVRAGTVSPVSSDIVISGSYDKTVNVY----DTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLG- 114 (239)
Q Consensus 41 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~- 114 (239)
..+.|.++.+.+ +...++.+..+|.|.+. +..+......-.....|.+++|+||+..++... ++++.+..-.-
T Consensus 74 ~~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 347899999999 78888888999999999 544443222224678899999999999998887 67777654210
Q ss_pred -------------C--------CeEEEE-------------------------EeccCCceEEEEEcCCCCEEEEEec--
Q psy11036 115 -------------G--------GKLLHK-------------------------FTCHHKTVTSLCLASGGKRLISASL-- 146 (239)
Q Consensus 115 -------------~--------~~~~~~-------------------------~~~~~~~i~~i~~~~~~~~l~~~~~-- 146 (239)
. |++-.. +. ....-..|+|-.||.++|+.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 0 000000 11 2234567899999999998875
Q ss_pred -C---CeEEEEEcccceEeee-------------------------ecceeEEEEEccCCCEEEEEEe--cccCcEEEEE
Q psy11036 147 -D---HHAKIYEMTLKTVSSF-------------------------TGGLDVCIWDMLGGGKLLHKFT--CHHKTVTSLC 195 (239)
Q Consensus 147 -d---~~i~i~d~~~~~~~~~-------------------------~~~~~i~~~d~~~~~~~~~~~~--~h~~~v~~~~ 195 (239)
. ..++||+-++....+- .+..+|.+|.-+.-..-...+. .....|..+.
T Consensus 232 ~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 232 ETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELA 311 (928)
T ss_pred CCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEE
Confidence 2 5799998774322211 1223466665332211112222 3456799999
Q ss_pred EccCCCeEEEEcCCceEEEEEccCCee--eEEec--CCCCeeeeEecC
Q psy11036 196 LASGGKRLISASLDHHAKIYEMVNFSP--VHTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 196 ~s~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~--~~~~v~~~~~sp 239 (239)
|++|+..||..-.|. |.+|-..+..- -+.+. ....+..+.|+|
T Consensus 312 Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 312 WNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred ECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence 999999999877665 99999887653 22333 334556688886
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-09 Score=86.38 Aligned_cols=175 Identities=19% Similarity=0.287 Sum_probs=130.2
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC-CCceeeecC--CCCEEEEEEecCC---cEEEEeCCCcEEEEEccCC-
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS-PDPVMSVNH--GSPVESVLCLPSG---GIFVTGGGLDVCIWDMLGG- 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~~~--~~~v~~~~~~~~~---~~l~~~~~~~i~~~d~~~~- 115 (239)
+++..+..+| .++-++.++.-| +.+.|+.. ..+.+.+.| .-.|-.+.|+|.. ..+++.+...-.+|++...
T Consensus 25 ~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 25 GGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred Ccccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 5677888999 778788888766 55667654 344444443 3346677887742 3455555666778988643
Q ss_pred -CeEEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEEcc--cceEeee----------------------ecceeE
Q psy11036 116 -GKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMT--LKTVSSF----------------------TGGLDV 169 (239)
Q Consensus 116 -~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~--~~~~~~~----------------------~~~~~i 169 (239)
...-..+.+|...|+.+-|+|+. ..+++++.|-.+..||++ ...+... .-+.++
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 23344566899999999999965 578999999999999998 3444433 235569
Q ss_pred EEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEcCCceEEEEEccC
Q psy11036 170 CIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 170 ~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~iwd~~~ 219 (239)
.+||.+.+..++..+++|...|..+.|.. ....+.+++.||+|+.||...
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 99999999999999999999999999876 344678899999999999864
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.8e-07 Score=79.30 Aligned_cols=172 Identities=12% Similarity=0.128 Sum_probs=102.9
Q ss_pred CeEEEEEecCCCCE-EEEeeCCCeEEEEeCCCCCceeee-cC-----------------CCCEEEEEEecC-CcEEEEeC
Q psy11036 44 YVRAGTVSPVSSDI-VISGSYDKTVNVYDTRSPDPVMSV-NH-----------------GSPVESVLCLPS-GGIFVTGG 103 (239)
Q Consensus 44 ~v~~~~~~~~~~~~-l~s~~~dg~v~vw~~~~~~~~~~~-~~-----------------~~~v~~~~~~~~-~~~l~~~~ 103 (239)
....+++.+ +++. +++-..+..|+++|..++. +.++ +. -.....++++|+ +..+++..
T Consensus 625 ~P~GIavd~-~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 625 RPQGLAYNA-KKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CCcEEEEeC-CCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 357899998 5554 4544556789999987654 3322 10 113467999995 44444444
Q ss_pred -CCcEEEEEccCCCeEEEEEec---------------cCCceEEEEEcCCCCE-EEEEecCCeEEEEEcccceEeeeecc
Q psy11036 104 -GLDVCIWDMLGGGKLLHKFTC---------------HHKTVTSLCLASGGKR-LISASLDHHAKIYEMTLKTVSSFTGG 166 (239)
Q Consensus 104 -~~~i~~~d~~~~~~~~~~~~~---------------~~~~i~~i~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~ 166 (239)
++.|.+||.. .+.. ..+.+ .-.....++++|+++. +++-+.++.|++||++......+.++
T Consensus 703 ~~~~I~v~d~~-~g~v-~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg 780 (1057)
T PLN02919 703 GQHQIWEYNIS-DGVT-RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG 780 (1057)
T ss_pred CCCeEEEEECC-CCeE-EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 6889999986 3332 22211 1123467999999884 45556679999999882222222111
Q ss_pred ee------EEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeE
Q psy11036 167 LD------VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVH 224 (239)
Q Consensus 167 ~~------i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~ 224 (239)
.. ..+.+..... . ...-.....++++++|+++++-+.+++|++||..++....
T Consensus 781 ~~~~~~~l~~fG~~dG~g-~----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 781 DPTFSDNLFKFGDHDGVG-S----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT 839 (1057)
T ss_pred ccccCcccccccCCCCch-h----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence 00 0011100000 0 0011224578999999999999999999999998876654
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=8e-10 Score=84.44 Aligned_cols=200 Identities=14% Similarity=0.092 Sum_probs=137.7
Q ss_pred CCCCEEEEeeCCC--c-ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC-CCeEEEEeCCCCCceee
Q psy11036 5 LPILIVALWDIPS--E-AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY-DKTVNVYDTRSPDPVMS 80 (239)
Q Consensus 5 ~~dg~i~vwd~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~v~vw~~~~~~~~~~ 80 (239)
+-||.++.|--.. + +.+..+..|. ..|.+++.+- ++.+++|.+. |..++++|+++-..+..
T Consensus 27 SlDGh~KFWkKs~isGvEfVKhFraHL--------------~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~Dminm 91 (558)
T KOG0882|consen 27 SLDGHKKFWKKSRISGVEFVKHFRAHL--------------GVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENFDMINM 91 (558)
T ss_pred ecchhhhhcCCCCccceeehhhhHHHH--------------HHHHhhhccc-cceeEeeccCcccceeEEEeeccchhhh
Confidence 3467777776322 1 2344556666 7888999888 7889999777 99999999988776654
Q ss_pred ec---CCCCEEEEEEecC-C-cEEEEeC--CCcEEEEEccCCC-eEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy11036 81 VN---HGSPVESVLCLPS-G-GIFVTGG--GLDVCIWDMLGGG-KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 152 (239)
Q Consensus 81 ~~---~~~~v~~~~~~~~-~-~~l~~~~--~~~i~~~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 152 (239)
+. .++.+..+ .+|. - ..++++. ++.+.++|-.... +....-.-|..+|.++.+++.+..+++....|.|.-
T Consensus 92 iKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEy 170 (558)
T KOG0882|consen 92 IKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEY 170 (558)
T ss_pred cccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEe
Confidence 43 23333322 2222 1 1444444 5999999987555 444555679999999999999999999999999999
Q ss_pred EEccc--ceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 153 YEMTL--KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 153 ~d~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
|...+ +.... -.-|.+... .-+..+.-......++.|+|++..+.+-+.|..|+++++++|+.++.+.
T Consensus 171 Ws~e~~~qfPr~------~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 171 WSAEGPFQFPRT------NLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ecCCCcccCccc------ccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 98872 11000 011111111 1122222335667899999999999999999999999999999887765
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-06 Score=63.52 Aligned_cols=186 Identities=10% Similarity=0.076 Sum_probs=118.2
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEe-cCCcEEEEeCCCcEEEEEccCCCeEEEEEec-
Q psy11036 47 AGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCL-PSGGIFVTGGGLDVCIWDMLGGGKLLHKFTC- 124 (239)
Q Consensus 47 ~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~- 124 (239)
++.|.+.++.++++-...+.|..|+..+++... +.... ...+++. +++.++++ ..+.+.++|+. .++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g~l~v~-~~~~~~~~d~~-~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDGRLYVA-DSGGIAVVDPD-TGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTSEEEEE-ETTCEEEEETT-TTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccCCEEEEE-EcCceEEEecC-CCcEEEEeecc
Confidence 678888567778887788999999998765433 33333 7777887 66555554 44556666887 5543333322
Q ss_pred ----cCCceEEEEEcCCCCEEEEEecC--------CeEEEEEcccceEeee----------------------ecceeEE
Q psy11036 125 ----HHKTVTSLCLASGGKRLISASLD--------HHAKIYEMTLKTVSSF----------------------TGGLDVC 170 (239)
Q Consensus 125 ----~~~~i~~i~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~----------------------~~~~~i~ 170 (239)
.....+.+++.|+|+..++.... |.+..++..++..... +....|.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~ 159 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIW 159 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeE
Confidence 34568899999999977775543 4566666552211111 2233366
Q ss_pred EEEccCCCE------EEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCC-CCeeeeEe
Q psy11036 171 IWDMLGGGK------LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYP-SPVLSIDV 237 (239)
Q Consensus 171 ~~d~~~~~~------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~ 237 (239)
.+++..... ....+....+..-.+++..+|++.++....+.|.+++.+ |+.+..+..+ ..+++++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred EEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 666653322 122222222347789999999988888889999999987 9999999865 68999988
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.5e-07 Score=70.83 Aligned_cols=96 Identities=15% Similarity=0.077 Sum_probs=62.0
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGS 85 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 85 (239)
.+|.|+.+|..+|+.+..++... ........ ++..++.++.++.+..+|..+++.+.......
T Consensus 73 ~~g~v~a~d~~tG~~~W~~~~~~--------------~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 73 ADGTVVALDAETGKRLWRVDLDE--------------RLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred CCCeEEEEEccCCcEeeeecCCC--------------CcccceEE---cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc
Confidence 45788889988998887766553 21112222 35677788889999999999999877665444
Q ss_pred CEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEE
Q psy11036 86 PVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLL 119 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~ 119 (239)
.+.+.-...++..++...++.+..+|.+ +++.+
T Consensus 136 ~~~~~p~v~~~~v~v~~~~g~l~a~d~~-tG~~~ 168 (377)
T TIGR03300 136 EVLSPPLVANGLVVVRTNDGRLTALDAA-TGERL 168 (377)
T ss_pred eeecCCEEECCEEEEECCCCeEEEEEcC-CCcee
Confidence 4332222223444444447889999987 44443
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.1e-09 Score=75.73 Aligned_cols=182 Identities=12% Similarity=0.240 Sum_probs=123.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-cee-----------------eecCCCCEEEEEEecCC---cEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD-PVM-----------------SVNHGSPVESVLCLPSG---GIFVT 101 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-~~~-----------------~~~~~~~v~~~~~~~~~---~~l~~ 101 (239)
+.|+++.|.. .|.++++|...|.|.++.-.... +.. .+.....|..+.|..++ .+|++
T Consensus 27 d~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 27 DKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred ceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 6799999998 78999999999999999865332 111 11134567888887643 46777
Q ss_pred eCCCcEEEEEccCC------------------C------------------eEE-----EEE-eccCCceEEEEEcCCCC
Q psy11036 102 GGGLDVCIWDMLGG------------------G------------------KLL-----HKF-TCHHKTVTSLCLASGGK 139 (239)
Q Consensus 102 ~~~~~i~~~d~~~~------------------~------------------~~~-----~~~-~~~~~~i~~i~~~~~~~ 139 (239)
+.|.+|++|.+... + +.+ +.. ..|.-.|.+++|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 77999999987521 0 000 001 34667789999998888
Q ss_pred EEEEEecCCeEEEEEcc--cceEeee------------------------------ecceeEEEEEccCCCEEE------
Q psy11036 140 RLISASLDHHAKIYEMT--LKTVSSF------------------------------TGGLDVCIWDMLGGGKLL------ 181 (239)
Q Consensus 140 ~l~~~~~d~~i~i~d~~--~~~~~~~------------------------------~~~~~i~~~d~~~~~~~~------ 181 (239)
.++++ .|-.|.+|++. ..+.... +..+.|.+-|++...-+.
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77776 57788889876 2222111 456778888887432211
Q ss_pred ---------EEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC-CeeeEEec
Q psy11036 182 ---------HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN-FSPVHTLD 227 (239)
Q Consensus 182 ---------~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~ 227 (239)
..+.+-...|..+.|+++|+++++-+. -+|+|||... ..++++++
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence 111223456889999999999997654 5899999965 45677664
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=79.87 Aligned_cols=120 Identities=17% Similarity=0.167 Sum_probs=93.5
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC-----CceeeecCCCCEEEEEEec-CCcEEEEeC-CCcEEEEEccCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP-----DPVMSVNHGSPVESVLCLP-SGGIFVTGG-GLDVCIWDMLGG 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~~~i~~~d~~~~ 115 (239)
+.|.++.|.. .++++..|..+|.|..+|++.+ .+...+-|...|+++..-. ++++|++.+ +|.|++||++..
T Consensus 253 sDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 253 SDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred hhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 7799999998 7899999999999999999854 4555667999999998877 677777777 899999999943
Q ss_pred Ce--EEEEEeccCCceEEEE--EcCCCCEEEEEecCCeEEEEEcc-cceEeee
Q psy11036 116 GK--LLHKFTCHHKTVTSLC--LASGGKRLISASLDHHAKIYEMT-LKTVSSF 163 (239)
Q Consensus 116 ~~--~~~~~~~~~~~i~~i~--~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~ 163 (239)
+. -+.+..+|-..-.-+- ..+....+++++.|...+||.++ +..+.++
T Consensus 332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 22 3677777765433333 35566788999999999999999 4444443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-07 Score=73.02 Aligned_cols=176 Identities=13% Similarity=0.144 Sum_probs=114.5
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee-----------CCCeEEEEeCC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS-----------YDKTVNVYDTR 73 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-----------~dg~v~vw~~~ 73 (239)
+..+.+++|.+..+..+.+-.... ..=..+.|++ .+++|+.-- ...++.++++.
T Consensus 199 ~kpa~~~i~sIp~~s~l~tk~lfk--------------~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 199 NKPAMVRILSIPKNSVLVTKNLFK--------------VSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCcEEEEEEccCCCeeeeeeeEe--------------ecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeec
Confidence 456777888777665544333222 2233688888 565544311 12468888887
Q ss_pred CCCceeeecCCCCEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecC---
Q psy11036 74 SPDPVMSVNHGSPVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD--- 147 (239)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--- 147 (239)
...........++|...+|.|.++.+++.+ .-.+.++|++ +.....+. .+.=..+.|+|.+++++.++.|
T Consensus 264 e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr--~Nl~~~~P--e~~rNT~~fsp~~r~il~agF~nl~ 339 (561)
T COG5354 264 ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR--GNLRFYFP--EQKRNTIFFSPHERYILFAGFDNLQ 339 (561)
T ss_pred ccccceeccccccceeeeecccCCceeEEecccccceeecccc--cceEEecC--CcccccccccCcccEEEEecCCccc
Confidence 444333335689999999999888776655 5789999997 33443333 4445678899999999998877
Q ss_pred CeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC------CceEEEEEccCC
Q psy11036 148 HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL------DHHAKIYEMVNF 220 (239)
Q Consensus 148 ~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~------d~~i~iwd~~~~ 220 (239)
|.+.+||.. .....+..+.+.. -+-+.|+||++++.+... |..|+|||+...
T Consensus 340 gni~i~~~~-------------------~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 340 GNIEIFDPA-------------------GRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cceEEeccC-------------------CceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 456666654 3233333444422 345679999999876643 788999998543
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-07 Score=73.81 Aligned_cols=193 Identities=13% Similarity=0.093 Sum_probs=124.3
Q ss_pred CCeEEEEEecCCCCEEEEeeCC-----------CeEEEEeCCCCCceeeecC---CCCE-EEEEEecCCcEEEEeCCCcE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYD-----------KTVNVYDTRSPDPVMSVNH---GSPV-ESVLCLPSGGIFVTGGGLDV 107 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~d-----------g~v~vw~~~~~~~~~~~~~---~~~v-~~~~~~~~~~~l~~~~~~~i 107 (239)
..|.-+.|+| +.++|++-+.. ..++|||+++|...+.+.. +..+ .-..||.+++++|--....|
T Consensus 250 p~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~si 328 (698)
T KOG2314|consen 250 PGVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSI 328 (698)
T ss_pred CCceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceE
Confidence 3588999999 89999986532 5799999999998887742 2222 34689999999998888899
Q ss_pred EEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecC-----CeEEEEEcc-cceEeee------------------
Q psy11036 108 CIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD-----HHAKIYEMT-LKTVSSF------------------ 163 (239)
Q Consensus 108 ~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~-~~~~~~~------------------ 163 (239)
.||+.. ...++..-.-.-..|....|+|.+..||--... ..+.+-.+. .+.+.+.
T Consensus 329 sIyEtp-sf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 329 SIYETP-SFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEEecC-ceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 999986 333333222234578889999998887764421 234444444 3322221
Q ss_pred --------ecc------eeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC---CceEEEEEccC-C---ee
Q psy11036 164 --------TGG------LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL---DHHAKIYEMVN-F---SP 222 (239)
Q Consensus 164 --------~~~------~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---d~~i~iwd~~~-~---~~ 222 (239)
+.. .++.++.++...-++..+.- ...|...+|-|.|..+++-+. ..++.+|.+++ . +.
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 000 12444555444444444332 556888999999988776543 35789998873 2 22
Q ss_pred eEEecCCCCeeeeEecC
Q psy11036 223 VHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 223 ~~~~~~~~~v~~~~~sp 239 (239)
+..+. ....+.+.|+|
T Consensus 487 Vk~~d-k~~~N~vfwsP 502 (698)
T KOG2314|consen 487 VKELD-KKFANTVFWSP 502 (698)
T ss_pred hhhhc-ccccceEEEcC
Confidence 33333 25677777776
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-08 Score=81.94 Aligned_cols=158 Identities=15% Similarity=0.234 Sum_probs=115.0
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCceeeecC-CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEE
Q psy11036 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVNH-GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTS 131 (239)
Q Consensus 54 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~ 131 (239)
++..++-|+....+..+|+++.+..+.... .+.|+-++. +++.+.+|. .|+|.+-|++ +.+.++++.+|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~-s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPN-SFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCC-cCceeeeeeccccceee
Confidence 455666677777788899998887776642 224655554 578888888 6999999999 89999999999999987
Q ss_pred EEEcCCCCEEEEEec---------CCeEEEEEcc-cceEeee----------------------ecceeEEEEEccCCC-
Q psy11036 132 LCLASGGKRLISASL---------DHHAKIYEMT-LKTVSSF----------------------TGGLDVCIWDMLGGG- 178 (239)
Q Consensus 132 i~~~~~~~~l~~~~~---------d~~i~i~d~~-~~~~~~~----------------------~~~~~i~~~d~~~~~- 178 (239)
+.. .|+.|+++|. |..|+|||++ .+.+.-+ +..+...+-|..+-.
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence 766 6889999884 5678999998 4433222 223344455522222
Q ss_pred --EEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEE
Q psy11036 179 --KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 179 --~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
.-+..+..-...+..+.+|++++.|+.|..+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 22233333445599999999999999999999999997
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.5e-07 Score=73.84 Aligned_cols=198 Identities=10% Similarity=0.099 Sum_probs=143.8
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCC-----------CCEEEEeeCCCeEEEEeCCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVS-----------SDIVISGSYDKTVNVYDTRS 74 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~l~s~~~dg~v~vw~~~~ 74 (239)
....|.+-|..+.+.++.+..|. ..|+.+.|.|.. .-+|+++.-.|.|.+||...
T Consensus 33 shslV~VVDs~s~q~iqsie~h~--------------s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~ 98 (1062)
T KOG1912|consen 33 SHSLVSVVDSRSLQLIQSIELHQ--------------SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL 98 (1062)
T ss_pred cCceEEEEehhhhhhhhccccCc--------------cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh
Confidence 44678889999999999999998 999999998731 12567778889999999998
Q ss_pred CCceeee-cCCCCEEEEEEecC---C-cEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-CCCEEEEEecC
Q psy11036 75 PDPVMSV-NHGSPVESVLCLPS---G-GIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLD 147 (239)
Q Consensus 75 ~~~~~~~-~~~~~v~~~~~~~~---~-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d 147 (239)
+..+..+ .+..++..++|-|. . ..+++-. ...+.+|+.. +++.+-..........|+.+.| |.+++..-+..
T Consensus 99 ~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd-tG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~ 177 (1062)
T KOG1912|consen 99 ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD-TGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSK 177 (1062)
T ss_pred hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc-CCceeeccccCCcceeeeeeCCCCcceEEEEccC
Confidence 8887777 56788999999772 3 3444444 6899999998 7888877776667788899999 77888888888
Q ss_pred CeEEEEEcc--------cceEeee-----------------------------------------------ecceeEEEE
Q psy11036 148 HHAKIYEMT--------LKTVSSF-----------------------------------------------TGGLDVCIW 172 (239)
Q Consensus 148 ~~i~i~d~~--------~~~~~~~-----------------------------------------------~~~~~i~~~ 172 (239)
|.+.+.+.- ++.++.- +=...+.++
T Consensus 178 g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~ 257 (1062)
T KOG1912|consen 178 GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVF 257 (1062)
T ss_pred ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEE
Confidence 888777653 1111111 112336677
Q ss_pred EccCCCEEEEEEecccCcEEEEEEccCC--CeEEEEcCCceEEEEEccC
Q psy11036 173 DMLGGGKLLHKFTCHHKTVTSLCLASGG--KRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 173 d~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~s~d~~i~iwd~~~ 219 (239)
|++- ..++....-..+.+.-+.+-|++ ..|++.-.||.+.+|-.+.
T Consensus 258 dle~-~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 258 DLEY-ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cchh-hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 7765 34444444445556666777754 5789999999999997654
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-10 Score=94.31 Aligned_cols=173 Identities=18% Similarity=0.239 Sum_probs=129.2
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC--C-CcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG--G-LDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~-~~i~~~d~~~~~~~ 118 (239)
...+|++|+- +.+.|+.|+..|.|+++++.+|...... .|..+++.+.-+.+|..+++.+ . --..+|++...+.+
T Consensus 1102 ~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~ 1180 (1516)
T KOG1832|consen 1102 ALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGP 1180 (1516)
T ss_pred cceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCc
Confidence 8899999999 8899999999999999999999887777 6999999999888999888777 2 34679999877777
Q ss_pred EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee-e---------------cc-----eeEEEEEccC
Q psy11036 119 LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF-T---------------GG-----LDVCIWDMLG 176 (239)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~-~---------------~~-----~~i~~~d~~~ 176 (239)
.+++.. -.++.|+.....-+.|+......+||++ ...+.++ + -. .+..+||++.
T Consensus 1181 ~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvLWDvR~ 1256 (1516)
T KOG1832|consen 1181 RHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVLWDVRI 1256 (1516)
T ss_pred cccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCceeeeecc
Confidence 777653 3568887765555666666788999998 5544442 1 11 1245788876
Q ss_pred CCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 177 GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 177 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
. +.++.+...+..+ .-.|+|+|..++.-+. |||+++.+.++.++
T Consensus 1257 ~-~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1257 P-EAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred H-HHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhcCc
Confidence 4 5555554433222 2369999998887765 89999887776654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-06 Score=64.48 Aligned_cols=140 Identities=15% Similarity=0.185 Sum_probs=93.2
Q ss_pred CCeEEEEEecCCCCEEEEeeCC--------CeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYD--------KTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDM 112 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~d--------g~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~ 112 (239)
.....+++.| ++++.++.... |.|..++.. ++.......-...+.++|+|+++.|+++. .+.|..+++
T Consensus 86 ~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 86 NRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp EEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEec
Confidence 5688999999 78877775543 557777766 44433344456678999999999887665 588999988
Q ss_pred cCCCe------EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec
Q psy11036 113 LGGGK------LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC 186 (239)
Q Consensus 113 ~~~~~------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 186 (239)
...+. .+..+....+..-.+++..+|+..++....+.|.+++.+ ++.+..+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~---------------------G~~~~~i~~ 222 (246)
T PF08450_consen 164 DADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD---------------------GKLLREIEL 222 (246)
T ss_dssp ETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT---------------------SCEEEEEE-
T ss_pred cccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC---------------------ccEEEEEcC
Confidence 64333 112222222347889999999988888888999999877 444444454
Q ss_pred ccCcEEEEEEc-cCCCeEEE
Q psy11036 187 HHKTVTSLCLA-SGGKRLIS 205 (239)
Q Consensus 187 h~~~v~~~~~s-~~~~~l~s 205 (239)
....+++++|. ++.+.|+.
T Consensus 223 p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 223 PVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp SSSSEEEEEEESTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEE
Confidence 44578999994 56555543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.3e-08 Score=74.21 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=75.9
Q ss_pred EEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEE
Q psy11036 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVES 89 (239)
Q Consensus 10 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~ 89 (239)
+++.+..+.+..+.+..+. ..|.+++|+|.+..++..++.+..|+|.|+++...+..+.....+.+
T Consensus 175 v~~l~~~~fkssq~lp~~g--------------~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wS 240 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEG--------------SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWS 240 (463)
T ss_pred eEEeccCCcchhhcccccc--------------hhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCcee
Confidence 4445544444444445554 88999999996555899999999999999999988888866699999
Q ss_pred EEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEe
Q psy11036 90 VLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFT 123 (239)
Q Consensus 90 ~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~ 123 (239)
++|.-+....+-++ .|.|.+||++.+..++..+.
T Consensus 241 C~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~ 276 (463)
T KOG1645|consen 241 CCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELV 276 (463)
T ss_pred eeeccCCcceeEEeccCceEEEEEccCCCchHhhhh
Confidence 99998766555555 59999999996555554444
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=82.84 Aligned_cols=153 Identities=11% Similarity=0.154 Sum_probs=115.7
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc---------------eeee-cCCCCEEEEEEecCCcEEEEeC-CC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP---------------VMSV-NHGSPVESVLCLPSGGIFVTGG-GL 105 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~---------------~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~ 105 (239)
....|++|+. +..+++.|+.||.+++..+.+... -+++ +|.+.|..+.|+.+.+.+.++. +|
T Consensus 15 vkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 6789999999 889999999999999998765421 1223 5899999999999998888887 79
Q ss_pred cEEEEEccCCCeEEEEEe--ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEE
Q psy11036 106 DVCIWDMLGGGKLLHKFT--CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHK 183 (239)
Q Consensus 106 ~i~~~d~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 183 (239)
-|.+|-+- .+.-...+. ...+.|.+++|+.+|..++....||.|.+=.+++. ++|.-.
T Consensus 94 lIiVWmly-kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN-----------RIwgKe-------- 153 (1189)
T KOG2041|consen 94 LIIVWMLY-KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN-----------RIWGKE-------- 153 (1189)
T ss_pred eEEEEeee-cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc-----------eecchh--------
Confidence 99999886 443332222 23457899999999999999999999987766622 233211
Q ss_pred EecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 184 FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 184 ~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
+++ .....+.|++|.+.++.+-..|.+.+||..
T Consensus 154 Lkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 154 LKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred cch--heccceeecccHHHHHhhhcCCcEEEeccc
Confidence 122 123467899999888888888999999874
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-05 Score=60.81 Aligned_cols=210 Identities=14% Similarity=0.175 Sum_probs=125.5
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEe--eCCCeEEEEeCCCCCceeeecCCC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISG--SYDKTVNVYDTRSPDPVMSVNHGS 85 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~--~~dg~v~vw~~~~~~~~~~~~~~~ 85 (239)
-.|.+||..+.++..++.-... +..... ......+++. ++++++.. +--..|.|-|+..++.+..+..++
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k----~R~~~~---~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG 138 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPK----PRAQVV---PYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG 138 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-----B--BS-----GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS
T ss_pred eEEEEEecCcCcccceEecCCc----chheec---ccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecCCC
Confidence 4688999999888776544320 000000 1112346676 66666553 334578888888888877776555
Q ss_pred CEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEec----cCCce-EEEEEcCCCCEEEEEecCCeEEEEEcccceE
Q psy11036 86 PVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTC----HHKTV-TSLCLASGGKRLISASLDHHAKIYEMTLKTV 160 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~i-~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 160 (239)
...-.-. ++..+...++||.+.-..+...++...+... -..++ ..-++...+..++-.+.+|.|+--|+.+...
T Consensus 139 C~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~ 217 (342)
T PF06433_consen 139 CWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA 217 (342)
T ss_dssp EEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE
T ss_pred EEEEEec-CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc
Confidence 3333322 3445667777999999999866666543321 11222 2334444555566677888888877762211
Q ss_pred e---ee------------------------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEE
Q psy11036 161 S---SF------------------------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLC 195 (239)
Q Consensus 161 ~---~~------------------------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~ 195 (239)
. .+ .++..|.++|+.+ ++.+..+.. ..++.+|.
T Consensus 218 ~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~ 295 (342)
T PF06433_consen 218 KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL-EHPIDSIA 295 (342)
T ss_dssp EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE-EEEESEEE
T ss_pred cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC-CCccceEE
Confidence 1 11 2345588999887 566665553 34577899
Q ss_pred EccCCC-eEEEE-cCCceEEEEEccCCeeeEEecC
Q psy11036 196 LASGGK-RLISA-SLDHHAKIYEMVNFSPVHTLDY 228 (239)
Q Consensus 196 ~s~~~~-~l~s~-s~d~~i~iwd~~~~~~~~~~~~ 228 (239)
.+.+.+ +|++. ..++.+.+||..+|+.+.+++.
T Consensus 296 Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 296 VSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 998765 56544 4689999999999999999983
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.1e-07 Score=71.30 Aligned_cols=160 Identities=12% Similarity=0.146 Sum_probs=99.3
Q ss_pred CCeEEEEEecCCCCEEEEe---eCC-CeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--CCc--EEEEEccC
Q psy11036 43 DYVRAGTVSPVSSDIVISG---SYD-KTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--GLD--VCIWDMLG 114 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~---~~d-g~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~--i~~~d~~~ 114 (239)
..+..-+|+| ++..++-. ... ..+.++++.+++....+...+.-..-+|+|+|+.++... ++. |.++|+.
T Consensus 193 ~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~- 270 (425)
T COG0823 193 SLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD- 270 (425)
T ss_pred cceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC-
Confidence 6778889999 45443322 122 459999999988777776667777889999999988777 444 6677776
Q ss_pred CCeEEEEEeccCCceEEEEEcCCCCEEEEEec-CCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEE
Q psy11036 115 GGKLLHKFTCHHKTVTSLCLASGGKRLISASL-DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTS 193 (239)
Q Consensus 115 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~ 193 (239)
.+. ...+....+.-+.-.|+|||+.++-.+. .|.-. |.++|.........+..+ ..-..
T Consensus 271 ~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~-----------------I~~~~~~g~~~~riT~~~--~~~~~ 330 (425)
T COG0823 271 GKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQ-----------------IYLYDLEGSQVTRLTFSG--GGNSN 330 (425)
T ss_pred CCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcc-----------------eEEECCCCCceeEeeccC--CCCcC
Confidence 333 4445544444457789999998886654 34333 333333332221122222 22226
Q ss_pred EEEccCCCeEEEEcC-Cce--EEEEEccCCeeeE
Q psy11036 194 LCLASGGKRLISASL-DHH--AKIYEMVNFSPVH 224 (239)
Q Consensus 194 ~~~s~~~~~l~s~s~-d~~--i~iwd~~~~~~~~ 224 (239)
-.++|||++|+..+. +|. |.+.|+.++..++
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~ 364 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR 364 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence 678999999876664 344 6666665555333
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.83 E-value=5e-06 Score=62.24 Aligned_cols=196 Identities=13% Similarity=0.216 Sum_probs=119.9
Q ss_pred EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeE--EEEEecCCCCEEEEeeC-----CCeEEEEeCC-CCCceee
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVR--AGTVSPVSSDIVISGSY-----DKTVNVYDTR-SPDPVMS 80 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~-----dg~v~vw~~~-~~~~~~~ 80 (239)
...+||..+++....+.... +.-. --.|++ ++++|++.-. .|.|-|||.. +.+.+..
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~--------------gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E 93 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPP--------------GRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAARGYRRIGE 93 (305)
T ss_pred EEEEEEcCCCceeeEEcCCC--------------CCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcCCcEEEeE
Confidence 56788999998887776543 2221 357899 7888887533 4789999998 4455556
Q ss_pred e-cCCCCEEEEEEecCCcEEEEeCC--------Cc-----------EEEEEccCCCeEEEE--E--eccCCceEEEEEcC
Q psy11036 81 V-NHGSPVESVLCLPSGGIFVTGGG--------LD-----------VCIWDMLGGGKLLHK--F--TCHHKTVTSLCLAS 136 (239)
Q Consensus 81 ~-~~~~~v~~~~~~~~~~~l~~~~~--------~~-----------i~~~d~~~~~~~~~~--~--~~~~~~i~~i~~~~ 136 (239)
+ .+.-....+.+.|+|+.|+++.. |. +.+.|.. +++.+.+ + ..|...|..+++.+
T Consensus 94 ~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~-sG~ll~q~~Lp~~~~~lSiRHLa~~~ 172 (305)
T PF07433_consen 94 FPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR-SGALLEQVELPPDLHQLSIRHLAVDG 172 (305)
T ss_pred ecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC-CCceeeeeecCccccccceeeEEecC
Confidence 6 35555677889999988887741 22 3334444 5666655 3 23667888899988
Q ss_pred CCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEc-CCceEEEE
Q psy11036 137 GGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIY 215 (239)
Q Consensus 137 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~d~~i~iw 215 (239)
+|..++..-..|.-. +. ...+.....+..+...+... . ....-.+.+-++++++++.+++..| .-+.+.+|
T Consensus 173 ~G~V~~a~Q~qg~~~--~~-~PLva~~~~g~~~~~~~~p~--~---~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 173 DGTVAFAMQYQGDPG--DA-PPLVALHRRGGALRLLPAPE--E---QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred CCcEEEEEecCCCCC--cc-CCeEEEEcCCCcceeccCCh--H---HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 877655544333210 00 00111111111111111100 0 0112345688999999998876555 57899999
Q ss_pred EccCCeeeEEecC
Q psy11036 216 EMVNFSPVHTLDY 228 (239)
Q Consensus 216 d~~~~~~~~~~~~ 228 (239)
|..+++.+.....
T Consensus 245 d~~tg~~~~~~~l 257 (305)
T PF07433_consen 245 DAATGRLLGSVPL 257 (305)
T ss_pred ECCCCCEeecccc
Confidence 9999998877653
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.5e-06 Score=64.12 Aligned_cols=192 Identities=14% Similarity=0.139 Sum_probs=117.1
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCC------CCEEEEeeC----------CCeEEEEe
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVS------SDIVISGSY----------DKTVNVYD 71 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~----------dg~v~vw~ 71 (239)
..|++.|..+.+.+.++.-... ..+.+++..... .++++.|+. .|.+.+++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-------------E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~ 68 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-------------EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFE 68 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-------------EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC-------------ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEE
Confidence 4689999988887776654331 445555443311 467776643 28999999
Q ss_pred CCCC----Ccee---eecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEe-ccCCceEEEEEcCCCCEEEE
Q psy11036 72 TRSP----DPVM---SVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFT-CHHKTVTSLCLASGGKRLIS 143 (239)
Q Consensus 72 ~~~~----~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~ 143 (239)
+... ..+. ....+++|++++-. ++ .++++.++.|.+|++....+....-. .....+.++... +++++.
T Consensus 69 i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~v 144 (321)
T PF03178_consen 69 ISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILV 144 (321)
T ss_dssp ECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEE
T ss_pred EEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEE
Confidence 9874 1222 22468899999877 34 47777789999999984441332222 122355555554 669999
Q ss_pred EecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEE--ecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC--
Q psy11036 144 ASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKF--TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN-- 219 (239)
Q Consensus 144 ~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~-- 219 (239)
|..-..+.++..+. ....+..+ ......++++.|-++++.++.+..+|.+.++....
T Consensus 145 gD~~~sv~~~~~~~-------------------~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~ 205 (321)
T PF03178_consen 145 GDAMKSVSLLRYDE-------------------ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEI 205 (321)
T ss_dssp EESSSSEEEEEEET-------------------TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-
T ss_pred EEcccCEEEEEEEc-------------------cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCC
Confidence 98888888775540 11111111 22345688888886667899999999999998752
Q ss_pred -----Ce----eeEEecCCCCeeee
Q psy11036 220 -----FS----PVHTLDYPSPVLSI 235 (239)
Q Consensus 220 -----~~----~~~~~~~~~~v~~~ 235 (239)
+. ....+..+..|+++
T Consensus 206 ~~~~~~~~~L~~~~~f~lg~~v~~~ 230 (321)
T PF03178_consen 206 PNSRDGDPKLERISSFHLGDIVNSF 230 (321)
T ss_dssp SSTTTTTTBEEEEEEEE-SS-EEEE
T ss_pred cccccccccceeEEEEECCCccceE
Confidence 22 33445566777776
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-07 Score=75.24 Aligned_cols=144 Identities=17% Similarity=0.145 Sum_probs=98.1
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecC-----CcEEEEeCC-CcEEEEEccCC-CeEEEEEeccC
Q psy11036 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPS-----GGIFVTGGG-LDVCIWDMLGG-GKLLHKFTCHH 126 (239)
Q Consensus 54 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~-~~i~~~d~~~~-~~~~~~~~~~~ 126 (239)
+|.++++|+.||+|.|-.+-+.+...++....++.+++++|+ .+.+++|+. | +.++.-+-- .+....+....
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence 589999999999999999999998888888999999999997 567888885 6 766643211 11222456678
Q ss_pred CceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEE
Q psy11036 127 KTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLIS 205 (239)
Q Consensus 127 ~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 205 (239)
++|.++.| .|+++|-++.+| |++||+. .+.+..+. .+.... ....--..+.|.++.++++
T Consensus 161 G~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~--------------~p~~~~-R~e~fpphl~W~~~~~LVI- 221 (846)
T KOG2066|consen 161 GPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIP--------------PPSQSV-RPELFPPHLHWQDEDRLVI- 221 (846)
T ss_pred cceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccC--------------CCCCCC-CcccCCCceEecCCCeEEE-
Confidence 89999999 577888887666 8889887 33333330 000000 1112234677877655443
Q ss_pred EcCCceEEEEEcc
Q psy11036 206 ASLDHHAKIYEMV 218 (239)
Q Consensus 206 ~s~d~~i~iwd~~ 218 (239)
|= .-+|+|..++
T Consensus 222 GW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 222 GW-GDSVKICSIK 233 (846)
T ss_pred ec-CCeEEEEEEe
Confidence 43 3367787776
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-06 Score=68.93 Aligned_cols=114 Identities=13% Similarity=0.067 Sum_probs=78.5
Q ss_pred CCCCEEEEEEec-CCcEEEEeC-----CCc----EEEEEccCCCeEE--E-EEeccCCceEEEEEcCCCCEEEEEecCCe
Q psy11036 83 HGSPVESVLCLP-SGGIFVTGG-----GLD----VCIWDMLGGGKLL--H-KFTCHHKTVTSLCLASGGKRLISASLDHH 149 (239)
Q Consensus 83 ~~~~v~~~~~~~-~~~~l~~~~-----~~~----i~~~d~~~~~~~~--~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 149 (239)
.+....++.|+. +...+.+.. +|. .++|+.. ..+.. . +--.....+.+++++|+...++.|+.||.
T Consensus 204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~-r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS 282 (545)
T PF11768_consen 204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECS-RNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS 282 (545)
T ss_pred ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEee-cCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe
Confidence 344556777776 334444432 233 4567765 22211 1 11246778999999999999999999999
Q ss_pred EEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 150 AKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 150 i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
|.+||... . +..+..+.-..+.++|+|+|.++++|+.-|.+.+||+.-
T Consensus 283 iiLyD~~~---------------------~-~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 283 IILYDTTR---------------------G-VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEEcCC---------------------C-eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 99999871 1 111122344578899999999999999999999999863
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-06 Score=67.80 Aligned_cols=121 Identities=16% Similarity=0.160 Sum_probs=77.1
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCe--EEEEeCCCCCceeee-cCC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKT--VNVYDTRSPDPVMSV-NHG 84 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--v~vw~~~~~~~~~~~-~~~ 84 (239)
..++++|+++++....+... +.-...+|+|++..++++...||. |.+.|+.+++..+ + ...
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~---------------g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~ 281 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFN---------------GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGF 281 (425)
T ss_pred ceEEEEeccCCccceeeccC---------------CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCC
Confidence 46888888887665544422 334477899955556667777775 5555666665333 4 223
Q ss_pred CCEEEEEEecCCcEEEEeCC--Cc--EEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec
Q psy11036 85 SPVESVLCLPSGGIFVTGGG--LD--VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL 146 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~~--~~--i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 146 (239)
+.-..=.|+|+|+.++..+| |. |.+++.+ +.....+......-..-.|+|||++|+..+.
T Consensus 282 gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~--g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 282 GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE--GSQVTRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred ccccCccCCCCCCEEEEEeCCCCCcceEEECCC--CCceeEeeccCCCCcCccCCCCCCEEEEEec
Confidence 33346679999999998884 54 5566665 3333444433333337789999999888774
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.5e-07 Score=75.04 Aligned_cols=150 Identities=14% Similarity=0.217 Sum_probs=111.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHK 121 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~ 121 (239)
+.+.|++++ ++.++-|+.+|.|++.+... .+...+.|... ..+|.++++++ ||.|.+-.+- +.+...+
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~-~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLF-TDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCC-ccccccccccc------ccCCceEEEecCCCcEEEeecc-CCcccee
Confidence 567777774 57999999999999999753 33333444443 66899999999 7999998887 5555555
Q ss_pred EeccCCceEEEEEcCC-----CCEEEEEecCCeEEEEEcc--cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEE
Q psy11036 122 FTCHHKTVTSLCLASG-----GKRLISASLDHHAKIYEMT--LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSL 194 (239)
Q Consensus 122 ~~~~~~~i~~i~~~~~-----~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~ 194 (239)
+. ...++.+++++|+ .+.+++|+..| +.++.-+ +. ...+ .+..-.++|.++
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------------------k~~v-~l~~~eG~I~~i 166 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------------------KDSV-VLSEGEGPIHSI 166 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------------------ccce-eeecCccceEEE
Confidence 54 4578999999997 57899999988 7776544 11 1111 344557899999
Q ss_pred EEccCCCeEEEEcCCceEEEEEccCCeeeEEecC
Q psy11036 195 CLASGGKRLISASLDHHAKIYEMVNFSPVHTLDY 228 (239)
Q Consensus 195 ~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 228 (239)
.|. |.++|=++.+| |++||..+++.+..++.
T Consensus 167 ~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 167 KWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPP 197 (846)
T ss_pred Eec--CcEEEEecCCC-cEEEeccccceeeccCC
Confidence 996 78888887776 89999999998888773
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-05 Score=58.38 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=105.2
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec--CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCe--
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN--HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGK-- 117 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~-- 117 (239)
..+..++|+|+++.++++....+.|..++. +++.++.+. .-+....+++..++.++++.. ++.+.++++....+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 679999999966678888888899988886 477777763 346788999988887777665 68898888842221
Q ss_pred ---EEEEEe-----ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccC
Q psy11036 118 ---LLHKFT-----CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHK 189 (239)
Q Consensus 118 ---~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~ 189 (239)
....+. .++..+-.++|+|.++.|+.+-+.....+|.++... +...+.+.+... .........
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-----~~~~~~~~~~~~----~~~~~~~~~ 171 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-----GGFDLFVSDDQD----LDDDKLFVR 171 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT------SS--EEEE-HH----HH-HT--SS
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-----Cccceeeccccc----cccccceec
Confidence 112221 245578999999988888888787777777776210 111121111100 000111234
Q ss_pred cEEEEEEccC-CCeEEEEcCCceEEEEEccCCeeeEEecC
Q psy11036 190 TVTSLCLASG-GKRLISASLDHHAKIYEMVNFSPVHTLDY 228 (239)
Q Consensus 190 ~v~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 228 (239)
.+.+++++|. +.+++-+..+..|.++| .+|+++..+..
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L 210 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSL 210 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEe
Confidence 5788999994 66777788889999999 68888877763
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.1e-06 Score=67.41 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=70.0
Q ss_pred CCeEEEEeCCC-----CCceeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCe-----------EEEEEecc
Q psy11036 64 DKTVNVYDTRS-----PDPVMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGK-----------LLHKFTCH 125 (239)
Q Consensus 64 dg~v~vw~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~-----------~~~~~~~~ 125 (239)
++.|.+.|.++ .+....+........+.++|+|+++++++ +.++.++|+....+ ...+..-.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 35688888887 34555567778888999999999999998 79999999973221 23344433
Q ss_pred CCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 126 HKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 126 ~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
.++ ...+|.++|+...+...|..|..||+.
T Consensus 375 lGP-LHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 375 LGP-LHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred CCc-ceEEECCCCCEEEeEeecceeEEEehH
Confidence 344 457899999888888899999999987
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.7e-07 Score=70.33 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=81.8
Q ss_pred CCeEEEEEecCCCCEEEEe----eCCCe----EEEEeCCCCCce----eeecCCCCEEEEEEecCCcEEEEeC-CCcEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISG----SYDKT----VNVYDTRSPDPV----MSVNHGSPVESVLCLPSGGIFVTGG-GLDVCI 109 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~----~~dg~----v~vw~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~ 109 (239)
....++.|+..+++.+.+- +.+|. -.+|+....+.. ..++.+..+.+++++|+...++.|. ||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 4456888887555665543 33443 346776555432 2336889999999999999999998 999999
Q ss_pred EEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 110 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 110 ~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
||.. .+ +.......-..+.++|+|+|..+++|+..|.+.+||+.
T Consensus 286 yD~~-~~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 286 YDTT-RG--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEcC-CC--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 9986 32 22222344567899999999999999999999999998
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.6e-07 Score=71.05 Aligned_cols=160 Identities=17% Similarity=0.187 Sum_probs=102.8
Q ss_pred EEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEe
Q psy11036 67 VNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS 145 (239)
Q Consensus 67 v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 145 (239)
...|+.....+...- ...-.-+-+.|||.|.+|++-....|.+|--. ....++.+. |. .|.-+.|||..++|++-+
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~GI~lWGG~-~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s 268 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQGIALWGGE-SFDRIQRFY-HP-GVQFIDFSPNEKYLVTYS 268 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccceeeecCc-cHHHHHhcc-CC-CceeeecCCccceEEEec
Confidence 456765544332211 12233467899999999999998789999765 445555554 54 478899999999999977
Q ss_pred cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec--ccCc-EEEEEEccCCCeEEEEcCCceEEEEEccCCee
Q psy11036 146 LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC--HHKT-VTSLCLASGGKRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 146 ~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--h~~~-v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
..-.+.-|+-. .+..+++||+.+ +.....+.. .... -.-..||.|++++|.-.. ..|.||+..+..+
T Consensus 269 ~~p~~~~~~d~--------e~~~l~IWDI~t-G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l 338 (698)
T KOG2314|consen 269 PEPIIVEEDDN--------EGQQLIIWDIAT-GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML 338 (698)
T ss_pred CCccccCcccC--------CCceEEEEEccc-cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee
Confidence 54433222211 122366666665 454444443 1222 234689999999997766 5799999877655
Q ss_pred eEEec-CCCCeeeeEecC
Q psy11036 223 VHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 223 ~~~~~-~~~~v~~~~~sp 239 (239)
+..-. -.+.|...+|||
T Consensus 339 ld~Kslki~gIr~FswsP 356 (698)
T KOG2314|consen 339 LDKKSLKISGIRDFSWSP 356 (698)
T ss_pred ecccccCCccccCcccCC
Confidence 54333 346788888887
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-05 Score=62.44 Aligned_cols=152 Identities=14% Similarity=0.104 Sum_probs=88.3
Q ss_pred CEEEEeeCCCeEEEEeCCCCCceeeecCCC-----C---EEEEEEec--CCcEEEEeC-CCcEEEEEccCCCeEEEEEec
Q psy11036 56 DIVISGSYDKTVNVYDTRSPDPVMSVNHGS-----P---VESVLCLP--SGGIFVTGG-GLDVCIWDMLGGGKLLHKFTC 124 (239)
Q Consensus 56 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~-----~---v~~~~~~~--~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~ 124 (239)
..++.+..++.+..+|.++++.+....... . ...+.-+| .+..+++++ ++.+..+|.. +++.+.....
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~-tG~~~W~~~~ 269 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR-SGRVLWKRDA 269 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECC-CCcEEEeecc
Confidence 356777888999999999998665432110 0 00111111 233444444 8999999998 6665554441
Q ss_pred cCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee---------------------ecceeEEEEEccCCCEEEE
Q psy11036 125 HHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF---------------------TGGLDVCIWDMLGGGKLLH 182 (239)
Q Consensus 125 ~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~---------------------~~~~~i~~~d~~~~~~~~~ 182 (239)
.. ..... ..+..++.++.+|.+..+|.. ++.+... ..++.+.++|..+ ++.+.
T Consensus 270 -~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~t-G~~~~ 344 (377)
T TIGR03300 270 -SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSRED-GSFVA 344 (377)
T ss_pred -CC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCC-CCEEE
Confidence 11 11222 245677788889999999886 4433222 2234477777665 56666
Q ss_pred EEecccCcEEE-EEEccCCCeEEEEcCCceEEEE
Q psy11036 183 KFTCHHKTVTS-LCLASGGKRLISASLDHHAKIY 215 (239)
Q Consensus 183 ~~~~h~~~v~~-~~~s~~~~~l~s~s~d~~i~iw 215 (239)
.+..+...+.. ..+. + +.|+.++.||.|+.|
T Consensus 345 ~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 345 RLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 66654443322 2222 3 347778889988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-07 Score=77.24 Aligned_cols=135 Identities=16% Similarity=0.159 Sum_probs=101.5
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC---------CeEEEEeCCCC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD---------KTVNVYDTRSP 75 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------g~v~vw~~~~~ 75 (239)
...|+|.+-|..+.+.++++.+|. +.|.++.. .|++|++++.. .-|+|||++..
T Consensus 194 ~t~G~V~LrD~~s~~~iht~~aHs--------------~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 194 DTRGTVFLRDPNSFETIHTFDAHS--------------GSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred cccceEEeecCCcCceeeeeeccc--------------cceeeeec---cCCeEEEeecccccccccccchhhhhhhhhh
Confidence 346999999999999999999999 88887776 57888888764 45889999987
Q ss_pred CceeeecCCCCEEEEEEecC-CcEEEEeC-CCcEEEEE---ccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeE
Q psy11036 76 DPVMSVNHGSPVESVLCLPS-GGIFVTGG-GLDVCIWD---MLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 150 (239)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-~~~i~~~d---~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 150 (239)
+.+.-++......-+.|+|. ...+++++ .|...+-| +.+....+..+..-...+..+.++++++.++.|..+|.|
T Consensus 257 ral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 257 RALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred hccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 76665554444567788884 23444444 79999988 332222233333444569999999999999999999999
Q ss_pred EEEEcc
Q psy11036 151 KIYEMT 156 (239)
Q Consensus 151 ~i~d~~ 156 (239)
.+|.-+
T Consensus 337 ~~wa~~ 342 (1118)
T KOG1275|consen 337 NLWADR 342 (1118)
T ss_pred eeecCC
Confidence 999744
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=72.31 Aligned_cols=127 Identities=19% Similarity=0.289 Sum_probs=100.4
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCC--CCEEEEEecCCeEEEEEcccc
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG--GKRLISASLDHHAKIYEMTLK 158 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~i~d~~~~ 158 (239)
+|.+.|..+.|...|..+++++ |..|.+||.......+.-..+|...|....|-|. .+.+++++.||.+++=.+.
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~-- 217 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL-- 217 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeec--
Confidence 5899999999999999999999 5999999998444455555689888888889884 4689999999999976655
Q ss_pred eEeeeecceeEEEEEccCC-CEEEEEEecccCcEEEEEEccCC-CeEEEEcCCceEEEEEccCCeeeEEe
Q psy11036 159 TVSSFTGGLDVCIWDMLGG-GKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMVNFSPVHTL 226 (239)
Q Consensus 159 ~~~~~~~~~~i~~~d~~~~-~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~ 226 (239)
.++ .+-...+..|.++|..++.-|+. .-|.+++.|+.+.-+|+++..+...+
T Consensus 218 ----------------~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 218 ----------------ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred ----------------cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence 111 12234556799999999999965 45889999999999999887654433
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.9e-09 Score=83.19 Aligned_cols=175 Identities=16% Similarity=0.211 Sum_probs=118.2
Q ss_pred CCeEEEEEecCCC-CEEEEeeCCCeEEEEeCCCCCce-eee--cCCCCEEEEEEec-CCcEEEEeC-----CCcEEEEEc
Q psy11036 43 DYVRAGTVSPVSS-DIVISGSYDKTVNVYDTRSPDPV-MSV--NHGSPVESVLCLP-SGGIFVTGG-----GLDVCIWDM 112 (239)
Q Consensus 43 ~~v~~~~~~~~~~-~~l~s~~~dg~v~vw~~~~~~~~-~~~--~~~~~v~~~~~~~-~~~~l~~~~-----~~~i~~~d~ 112 (239)
..+.|+++.-... .+++.|..+|.|-+-.++...-. ..+ ++..++++++|++ |...||+|- +..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 5677888776333 57888999999999988765432 222 5778999999998 556777765 466999999
Q ss_pred cCCC-eEEE--EEe-ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEeccc
Q psy11036 113 LGGG-KLLH--KFT-CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH 188 (239)
Q Consensus 113 ~~~~-~~~~--~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~ 188 (239)
.... .+.. .+. +......+++|..+.+.+.+|.....++++|++ ........-.+
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR---------------------qs~~~~~svnT 195 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR---------------------QSLDSVSSVNT 195 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhh---------------------hhhhhhhhhhh
Confidence 7321 1111 111 133455688998888999999999999999998 11111112223
Q ss_pred CcEEEEEEcc-CCCeEEEEcCCceEEEEE-ccC-CeeeEEecCC-----CCeeeeEecC
Q psy11036 189 KTVTSLCLAS-GGKRLISASLDHHAKIYE-MVN-FSPVHTLDYP-----SPVLSIDVSM 239 (239)
Q Consensus 189 ~~v~~~~~s~-~~~~l~s~s~d~~i~iwd-~~~-~~~~~~~~~~-----~~v~~~~~sp 239 (239)
..+..+...| .+.++++-. ||.|.+|| ..+ ..++..+.+. ..+..++|+|
T Consensus 196 k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 196 KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred hhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEecc
Confidence 4566778888 778888766 99999999 333 3344444432 3488888887
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-05 Score=63.28 Aligned_cols=187 Identities=13% Similarity=0.078 Sum_probs=101.8
Q ss_pred EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec---CCC
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN---HGS 85 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~---~~~ 85 (239)
.|++|+. .|+++..+.-.. +.|.++.|+. + +.|+.-..||.++++|+.... ...++ ...
T Consensus 62 ~I~iys~-sG~ll~~i~w~~--------------~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~ 123 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS--------------GRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEE 123 (410)
T ss_pred EEEEECC-CCCEeEEEEECC--------------CCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCce-eechhhhcccc
Confidence 5888886 566677666555 7899999987 4 455566789999999986333 22221 111
Q ss_pred C-----EEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEE----------EEEcCCCCEEEEEecCCeE
Q psy11036 86 P-----VESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTS----------LCLASGGKRLISASLDHHA 150 (239)
Q Consensus 86 ~-----v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~----------i~~~~~~~~l~~~~~d~~i 150 (239)
. +....+..+| .++...++.+.+.+--........+..-...... ..++.+....+....++.+
T Consensus 124 ~v~e~~i~~~~~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i 202 (410)
T PF04841_consen 124 KVLECRIFAIWFYKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETI 202 (410)
T ss_pred CcccccccccccCCCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEE
Confidence 2 2222333345 3333344444433221011011111100000000 1222233333333333333
Q ss_pred EEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCC-
Q psy11036 151 KIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYP- 229 (239)
Q Consensus 151 ~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~- 229 (239)
.+.+-. . . ..+. ..+++..+++||+|+++|.-..+|.+.+....-.+.+..+..+
T Consensus 203 ~~i~~~-------------------~-~---~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~ 258 (410)
T PF04841_consen 203 YIIDEN-------------------S-F---KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS 258 (410)
T ss_pred EEEEcc-------------------c-c---cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc
Confidence 322211 0 0 0011 2467999999999999999999999999987767777777644
Q ss_pred -CCeeeeEec
Q psy11036 230 -SPVLSIDVS 238 (239)
Q Consensus 230 -~~v~~~~~s 238 (239)
.....|.|+
T Consensus 259 ~~~p~~~~WC 268 (410)
T PF04841_consen 259 KSPPKQMAWC 268 (410)
T ss_pred CCCCcEEEEE
Confidence 677788875
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-05 Score=61.97 Aligned_cols=200 Identities=14% Similarity=0.059 Sum_probs=112.5
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEE-EEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRA-GTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
.+|.++.+|.++|+.+...+... .+.+ .... +..++.+..++.+..+|.++++.+......
T Consensus 128 ~~g~l~ald~~tG~~~W~~~~~~---------------~~~ssP~v~---~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 128 EKGQVYALNAEDGEVAWQTKVAG---------------EALSRPVVS---DGLVLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred CCCEEEEEECCCCCCcccccCCC---------------ceecCCEEE---CCEEEEECCCCEEEEEEccCCCEeeeecCC
Confidence 46788889999999887776543 2221 1221 345666778899999999999988776432
Q ss_pred CCEEEE--EEec---CCcEEEEeCCCcEEEEEccCCCeEEEEEeccCC-------ceEEEEEcC--CCCEEEEEecCCeE
Q psy11036 85 SPVESV--LCLP---SGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHK-------TVTSLCLAS--GGKRLISASLDHHA 150 (239)
Q Consensus 85 ~~v~~~--~~~~---~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~-------~i~~i~~~~--~~~~l~~~~~d~~i 150 (239)
.+...+ .-+| ++..++...++.+..+|.. +++..-+...... ....+.-+| .+..++.++.++.+
T Consensus 190 ~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l 268 (394)
T PRK11138 190 VPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME-QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNL 268 (394)
T ss_pred CCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc-CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeE
Confidence 211100 0111 3444444447888888887 5554433221000 001111122 24566667778888
Q ss_pred EEEEcc-cceEeee------------------ecceeEEEEEccCCCEEEEEEecc-cCcEEEEEEccCCCeEEEEcCCc
Q psy11036 151 KIYEMT-LKTVSSF------------------TGGLDVCIWDMLGGGKLLHKFTCH-HKTVTSLCLASGGKRLISASLDH 210 (239)
Q Consensus 151 ~i~d~~-~~~~~~~------------------~~~~~i~~~d~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~d~ 210 (239)
..+|.. ++.+-.. ..++.+..+|..+... +-....- .....+... .+..|+.++.||
T Consensus 269 ~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G 345 (394)
T PRK11138 269 VALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVE-LWSQSDLLHRLLTAPVL--YNGYLVVGDSEG 345 (394)
T ss_pred EEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcE-EEcccccCCCcccCCEE--ECCEEEEEeCCC
Confidence 888876 4433221 2234466666655322 2211110 011111122 255677888999
Q ss_pred eEEEEEccCCeeeEEec
Q psy11036 211 HAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 211 ~i~iwd~~~~~~~~~~~ 227 (239)
.|...|..+|+.+.+.+
T Consensus 346 ~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 346 YLHWINREDGRFVAQQK 362 (394)
T ss_pred EEEEEECCCCCEEEEEE
Confidence 99999999999988776
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-05 Score=67.79 Aligned_cols=178 Identities=13% Similarity=0.169 Sum_probs=111.3
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCC-CcEEEEEc----cCC--
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGG-LDVCIWDM----LGG-- 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~i~~~d~----~~~-- 115 (239)
+.|.++.|.. +.+.++.+..+|.|.+-|..+......-.....|.+++|+|++..++.... +++.+..- -..
T Consensus 69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLA-DTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEec-ccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 6899999999 788888888999999988777654333346788999999999999988774 55554322 000
Q ss_pred ----------------CeEEEEEec---------------------cCCceEEEEEcCCCCEEEEEe----cC-CeEEEE
Q psy11036 116 ----------------GKLLHKFTC---------------------HHKTVTSLCLASGGKRLISAS----LD-HHAKIY 153 (239)
Q Consensus 116 ----------------~~~~~~~~~---------------------~~~~i~~i~~~~~~~~l~~~~----~d-~~i~i~ 153 (239)
++.-..+.+ ..+.=+.|+|--||.++++.. .+ ..|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 011111111 011224589999999998833 23 799999
Q ss_pred EcccceEee------e-------------------ecceeEEEEEccCC--CEEEEEEecccCcEEEEEEccCCCeEEE-
Q psy11036 154 EMTLKTVSS------F-------------------TGGLDVCIWDMLGG--GKLLHKFTCHHKTVTSLCLASGGKRLIS- 205 (239)
Q Consensus 154 d~~~~~~~~------~-------------------~~~~~i~~~d~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s- 205 (239)
|.++..... . +...+|.++.-+.- ++....+......+..++|+.++..|++
T Consensus 228 drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~ 307 (1265)
T KOG1920|consen 228 DREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVV 307 (1265)
T ss_pred cccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeee
Confidence 987211000 0 22233555543221 1111112222334899999999999987
Q ss_pred --EcCCceEEEEEccCCe
Q psy11036 206 --ASLDHHAKIYEMVNFS 221 (239)
Q Consensus 206 --~s~d~~i~iwd~~~~~ 221 (239)
......|++|-+.+..
T Consensus 308 ~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 308 TSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ecccccceEEEEEecCeE
Confidence 4455569999887654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.5e-05 Score=65.68 Aligned_cols=194 Identities=13% Similarity=0.106 Sum_probs=122.9
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC---CCeEEEEeCCCCCceeee--
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY---DKTVNVYDTRSPDPVMSV-- 81 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~v~vw~~~~~~~~~~~-- 81 (239)
...|+||+-+ |+...+-..-. +--.+++|.| .|+++++.-. ...|.+|. ++|..-..|
T Consensus 236 ~R~iRVy~Re-G~L~stSE~v~--------------gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l 298 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTSEPVD--------------GLEGALSWRP-SGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTL 298 (928)
T ss_pred eeEEEEECCC-ceEEeccccCC--------------CccCCccCCC-CCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEec
Confidence 4678888854 55433333222 3345789999 8999988754 24566665 344333333
Q ss_pred ---cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCe--EEEEEec-cCCceEEEEEcCCC-CEEEEEecCCeEEEEE
Q psy11036 82 ---NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGK--LLHKFTC-HHKTVTSLCLASGG-KRLISASLDHHAKIYE 154 (239)
Q Consensus 82 ---~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~--~~~~~~~-~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d 154 (239)
.....|..+.|++++..|++.-...|.+|-.. +.. ..+.+.. ....+..+.|+|.. ..|...+.+|.+..++
T Consensus 299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~-NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRS-NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CCCCCCceeeEEEECCCCCEEEEEecCCceEEEee-CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 24568999999999999999886679999886 433 2233332 23345569999954 5677777778888777
Q ss_pred cccceE------------eeeecceeEEEEEccCC--CEEE--EEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 155 MTLKTV------------SSFTGGLDVCIWDMLGG--GKLL--HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 155 ~~~~~~------------~~~~~~~~i~~~d~~~~--~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
+..... .....+..+.+-+++.. ..|+ ..+. -..+|.+++|++++..+++-..||.|.+|...
T Consensus 378 ~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 378 FAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred EEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 651111 11122333444444332 1122 2232 35689999999998889999999999999854
Q ss_pred C
Q psy11036 219 N 219 (239)
Q Consensus 219 ~ 219 (239)
.
T Consensus 457 ~ 457 (928)
T PF04762_consen 457 L 457 (928)
T ss_pred C
Confidence 3
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.3e-06 Score=67.92 Aligned_cols=151 Identities=17% Similarity=0.263 Sum_probs=107.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecC-----------CcE-EEEeC-CCcEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPS-----------GGI-FVTGG-GLDVC 108 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~-----------~~~-l~~~~-~~~i~ 108 (239)
..-.++.|+| +.+++-|+. ..|.+-|.++-+.+..+ .|+..|+.+.|.|. ... ++++. .|.|.
T Consensus 16 sN~~A~Dw~~--~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 16 SNRNAADWSP--SGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccccCc--cceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 4466889998 346666655 56889999999988888 58899999999873 123 34444 59999
Q ss_pred EEEccCCCeEEEEEeccCCceEEEEEcC---CC-CEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEE
Q psy11036 109 IWDMLGGGKLLHKFTCHHKTVTSLCLAS---GG-KRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKF 184 (239)
Q Consensus 109 ~~d~~~~~~~~~~~~~~~~~i~~i~~~~---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 184 (239)
+||.. ....+..+..|..++..++|-+ +. ..|++-.....+.+|+.. .++.....
T Consensus 93 l~d~~-~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd--------------------tG~k~Wk~ 151 (1062)
T KOG1912|consen 93 LVDFV-LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD--------------------TGEKFWKY 151 (1062)
T ss_pred EEEeh-hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc--------------------CCceeecc
Confidence 99998 7777778888999999999976 33 456676777888888876 34444443
Q ss_pred ecccCcEEEEEEcc-CCCeEEEEcCCceEEEEEc
Q psy11036 185 TCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 185 ~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~iwd~ 217 (239)
........++.+.| |.+.+..-+..|.+.+-+.
T Consensus 152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred ccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 44344566677777 6666666666677666654
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.3e-06 Score=65.26 Aligned_cols=211 Identities=15% Similarity=0.081 Sum_probs=130.2
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCC--CEEEEeeCCCeEEEEeCCCCCcee-ee--
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSS--DIVISGSYDKTVNVYDTRSPDPVM-SV-- 81 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~dg~v~vw~~~~~~~~~-~~-- 81 (239)
|..++++|+++-..+.-++.... ++.+ +...++.+. .+-++.-.++.+.++|-....+.. .+
T Consensus 75 Dhs~KvfDvEn~DminmiKL~~l------------Pg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 75 DHSVKVFDVENFDMINMIKLVDL------------PGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred ccceeEEEeeccchhhhcccccC------------CCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence 78889988877665544433220 0222 222233111 223344567899999976554332 22
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCe-----EEEE---------EeccCCceEEEEEcCCCCEEEEEec
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGK-----LLHK---------FTCHHKTVTSLCLASGGKRLISASL 146 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~-----~~~~---------~~~~~~~i~~i~~~~~~~~l~~~~~ 146 (239)
-|..+|.++.+.|.+..+++.. .|.|..|..+...+ .... +.......+++.|+|+|..+.+-+.
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~ 221 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP 221 (558)
T ss_pred cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence 4889999999999999988888 69999998862111 1111 1123456789999999999999999
Q ss_pred CCeEEEEEcc-cceEeeeeccee---------EEEEEcc--CCCEEEEEEecccC-cEEEEEEccCCCeEEEEcCCceEE
Q psy11036 147 DHHAKIYEMT-LKTVSSFTGGLD---------VCIWDML--GGGKLLHKFTCHHK-TVTSLCLASGGKRLISASLDHHAK 213 (239)
Q Consensus 147 d~~i~i~d~~-~~~~~~~~~~~~---------i~~~d~~--~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~d~~i~ 213 (239)
|..|++++++ ++.++.+..... ..+-.+. ......+.+..|.. .-+.++|...|++|+-++-=| |+
T Consensus 222 DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ik 300 (558)
T KOG0882|consen 222 DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IK 300 (558)
T ss_pred ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EE
Confidence 9999999998 554444411100 1111110 00111112222333 235678999999999887654 88
Q ss_pred EEEccCCeeeEEecCCCC
Q psy11036 214 IYEMVNFSPVHTLDYPSP 231 (239)
Q Consensus 214 iwd~~~~~~~~~~~~~~~ 231 (239)
+.++.+++..+.+.-...
T Consensus 301 vin~~tn~v~ri~gk~e~ 318 (558)
T KOG0882|consen 301 VINLDTNTVVRILGKDEA 318 (558)
T ss_pred EEEeecCeEEEEeccchh
Confidence 999999888877753333
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=6e-05 Score=62.95 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=105.0
Q ss_pred CC-eEEEEEecCCCCEEEEeeCCC-----eEEEEeCCCC------Cce---eeec-----CCCCEEEEEEecCCcEEEEe
Q psy11036 43 DY-VRAGTVSPVSSDIVISGSYDK-----TVNVYDTRSP------DPV---MSVN-----HGSPVESVLCLPSGGIFVTG 102 (239)
Q Consensus 43 ~~-v~~~~~~~~~~~~l~s~~~dg-----~v~vw~~~~~------~~~---~~~~-----~~~~v~~~~~~~~~~~l~~~ 102 (239)
.. |..+.... +.++|++-+.|+ .+++|+++.- +++ +.+. .+.++.+++.+.+-+.+++|
T Consensus 65 ~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~G 143 (933)
T KOG2114|consen 65 QSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCG 143 (933)
T ss_pred hhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEE
Confidence 44 44444443 557888877765 4899998633 223 1222 35678999999998888888
Q ss_pred C-CCcEEEEEccC---CCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCC
Q psy11036 103 G-GLDVCIWDMLG---GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178 (239)
Q Consensus 103 ~-~~~i~~~d~~~---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~ 178 (239)
- +|.|..+.-+- .+....-......+|+.+++..++..++-...-..|.+|.+.+ ..
T Consensus 144 f~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-------------------r~ 204 (933)
T KOG2114|consen 144 FTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-------------------RT 204 (933)
T ss_pred ecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC-------------------CC
Confidence 7 79998885331 1222222233567999999998887744444556778887761 12
Q ss_pred EEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 179 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.....+..|..++.|..+++....+++++ +..+.+|+....++...+.
T Consensus 205 p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 205 PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 22334566777888888887555354443 4578888887666655555
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4e-06 Score=61.97 Aligned_cols=175 Identities=14% Similarity=0.239 Sum_probs=119.9
Q ss_pred CCeEEEEEecCCC-CEEEEeeCCCeEEEEeCCCCC-------------------c-----------------------ee
Q psy11036 43 DYVRAGTVSPVSS-DIVISGSYDKTVNVYDTRSPD-------------------P-----------------------VM 79 (239)
Q Consensus 43 ~~v~~~~~~~~~~-~~l~s~~~dg~v~vw~~~~~~-------------------~-----------------------~~ 79 (239)
..|..+.|..+.+ ..++..+.|.+|++|.+.... + .+
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 5688888886433 356666789999999875320 0 00
Q ss_pred ee--cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeE--EEEEeccC-----CceEEEEEcCC-CCEEEEEecCCe
Q psy11036 80 SV--NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKL--LHKFTCHH-----KTVTSLCLASG-GKRLISASLDHH 149 (239)
Q Consensus 80 ~~--~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~--~~~~~~~~-----~~i~~i~~~~~-~~~l~~~~~d~~ 149 (239)
.. .|...+.++.+..+...++++.+-.|.+|++...... +..++.|. .-|++..|+|. ...+.-.+..|.
T Consensus 166 vyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 166 VYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred eccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 01 2555677888988999999998999999998743332 22334443 36889999995 467777888999
Q ss_pred EEEEEcccceEee-------e----------------------e---------cceeEEEEEccCCCEEEEEEecccC--
Q psy11036 150 AKIYEMTLKTVSS-------F----------------------T---------GGLDVCIWDMLGGGKLLHKFTCHHK-- 189 (239)
Q Consensus 150 i~i~d~~~~~~~~-------~----------------------~---------~~~~i~~~d~~~~~~~~~~~~~h~~-- 189 (239)
|++-|++...+.. . . .-..+.+||++....++.+...|..
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~ 325 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLM 325 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHH
Confidence 9999998221110 0 1 1123899999998888888765532
Q ss_pred ----------cE---EEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 190 ----------TV---TSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 190 ----------~v---~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
+| ..+.||-|.+.+.+|+.....-||-.
T Consensus 326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 23 34678888888999988877777753
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=7e-06 Score=68.42 Aligned_cols=109 Identities=12% Similarity=0.128 Sum_probs=86.0
Q ss_pred eEEEEEecCCCCEEEEeeC----CCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE
Q psy11036 45 VRAGTVSPVSSDIVISGSY----DKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 45 v~~~~~~~~~~~~l~s~~~----dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~ 119 (239)
-+-..|+| ...++++++. .|.|.||- ++|++......+-.+++++|+|..-.|+.+- -|.+.+|... ..+.-
T Consensus 18 sti~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~-~~e~h 94 (1416)
T KOG3617|consen 18 STISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN-TTETH 94 (1416)
T ss_pred ccccccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecC-Cceee
Confidence 34568999 6778887653 47888874 5677766665566678899999877777776 4999999986 44444
Q ss_pred EEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 120 HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
.....|..+|..+.|+++|..++++..=|.+.+|...
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 4445799999999999999999999999999999876
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00034 Score=55.50 Aligned_cols=186 Identities=13% Similarity=0.126 Sum_probs=122.3
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee--CCCeEEEEeCCCCCceeeec
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS--YDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~v~vw~~~~~~~~~~~~ 82 (239)
..+..|.+.|..+.+........ .....++++|+++...++-. .++++.+.|..+.+......
T Consensus 93 ~~~~~v~vid~~~~~~~~~~~vG---------------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 93 GDSNTVSVIDTATNTVLGSIPVG---------------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred CCCCeEEEEcCcccceeeEeeec---------------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 34677888887666666655544 24568999994444444444 37899999999888887764
Q ss_pred CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEE-----EEeccCCceEEEEEcCCCCEEEEEecC---CeEEE
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLH-----KFTCHHKTVTSLCLASGGKRLISASLD---HHAKI 152 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~-----~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i 152 (239)
....-..++++|+|..+++.. ++.+.+.|.. .....+ ..... ..-..+.++|+|..+...... +.+..
T Consensus 158 vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~-~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 158 VGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTS-GNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred cCCCcceEEECCCCCeEEEEecCCCeEEEEeCC-CcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 332238999999999887777 6999999976 333332 12222 234678899999866655443 47776
Q ss_pred EEcccceEeeeecceeEEEEEccCCCEEEEE-EecccCcEEEEEEccCCCeEEEE-cCCceEEEEEccCCeeeEEec
Q psy11036 153 YEMTLKTVSSFTGGLDVCIWDMLGGGKLLHK-FTCHHKTVTSLCLASGGKRLISA-SLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 153 ~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.|.. ....... ..........+.++|+|..+.+. +..+.+.+-|..+......+.
T Consensus 236 id~~--------------------~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 236 IDTA--------------------TGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred EeCC--------------------CceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 6665 1121111 11111134567899999988777 445899999998888877765
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.6e-05 Score=46.87 Aligned_cols=101 Identities=20% Similarity=0.245 Sum_probs=70.2
Q ss_pred eEEEEEecC---CCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEE
Q psy11036 45 VRAGTVSPV---SSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHK 121 (239)
Q Consensus 45 v~~~~~~~~---~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~ 121 (239)
|+++++... +.+.|++|+.|..||+|+- .+.+..+.....|+++.-...+++.++-.+|+|-+|+-. ..+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~---~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRS---QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCc---ceeee
Confidence 566666653 3478999999999999984 356677777888999988877665555558999999853 33444
Q ss_pred EeccCCceEEEEEcC-C--C-CEEEEEecCCeEE
Q psy11036 122 FTCHHKTVTSLCLAS-G--G-KRLISASLDHHAK 151 (239)
Q Consensus 122 ~~~~~~~i~~i~~~~-~--~-~~l~~~~~d~~i~ 151 (239)
.+.... ++++.+.. + | ..|++|-.+|.|-
T Consensus 77 iKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 443333 55565533 3 3 3788898888764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00035 Score=52.61 Aligned_cols=159 Identities=17% Similarity=0.205 Sum_probs=108.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCC-eEEEEeCCCCCceeeec-CCCCE--EEEEEecCCcEEEEeC------CCcEEEEEc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDK-TVNVYDTRSPDPVMSVN-HGSPV--ESVLCLPSGGIFVTGG------GLDVCIWDM 112 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg-~v~vw~~~~~~~~~~~~-~~~~v--~~~~~~~~~~~l~~~~------~~~i~~~d~ 112 (239)
.....++.+|.....++.+-.-| ...+||..+++....+. ..+.- -.-.|+++|++|++.. .|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 45667888886667777777766 46789999999887773 22222 2467999999999985 377999999
Q ss_pred cCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec-------CCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEE--
Q psy11036 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL-------DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHK-- 183 (239)
Q Consensus 113 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-------d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-- 183 (239)
....+.+.++..|.-.-..+.+.|||+.|+++-- .|..++ ++. +-...+...|..+ ++.+..
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~-------tM~psL~~ld~~s-G~ll~q~~ 155 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLD-------TMQPSLVYLDARS-GALLEQVE 155 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-Chh-------hcCCceEEEecCC-Cceeeeee
Confidence 8778888999988877888999999988777621 122221 121 1112234444444 444433
Q ss_pred E--ecccCcEEEEEEccCCCeEEEEcCCc
Q psy11036 184 F--TCHHKTVTSLCLASGGKRLISASLDH 210 (239)
Q Consensus 184 ~--~~h~~~v~~~~~s~~~~~l~s~s~d~ 210 (239)
+ ..|...|..|++.++|..++..-..|
T Consensus 156 Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg 184 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVDGDGTVAFAMQYQG 184 (305)
T ss_pred cCccccccceeeEEecCCCcEEEEEecCC
Confidence 4 34778899999999998777654433
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.5e-06 Score=68.51 Aligned_cols=93 Identities=12% Similarity=0.065 Sum_probs=74.9
Q ss_pred CCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEE-EEEEccCCCeEE
Q psy11036 126 HKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVT-SLCLASGGKRLI 204 (239)
Q Consensus 126 ~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~ 204 (239)
...+.-+.|+|.-..+|.+..+|.+.+..+. .+.+..+.-|...++ +++|.|||+.||
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n---------------------~qRlwtip~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN---------------------WQRLWTIPIPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec---------------------cceeEeccCCCCccceeeeecCCCCEEE
Confidence 3467889999999999999999999888766 233333343455555 999999999999
Q ss_pred EEcCCceEEEEEccCCeeeEE--ecCCCCeeeeEecC
Q psy11036 205 SASLDHHAKIYEMVNFSPVHT--LDYPSPVLSIDVSM 239 (239)
Q Consensus 205 s~s~d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~sp 239 (239)
.|-.||+|++-|.+++..+.. +.....|.++-|.|
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 999999999999999999988 44677888887753
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.2e-05 Score=55.16 Aligned_cols=142 Identities=18% Similarity=0.214 Sum_probs=88.4
Q ss_pred CCeEEEEeCCCCCceeeecCC---CCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCE
Q psy11036 64 DKTVNVYDTRSPDPVMSVNHG---SPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR 140 (239)
Q Consensus 64 dg~v~vw~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 140 (239)
+|+|..+|..+++.+...... ....+.....++..++...++.+..||.. +++.+.+... ..++.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~-tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAK-TGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETT-TSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECC-CCCEEEEeec-ccccccee-eecccc
Confidence 689999999999988877432 22222233334444444458999999998 7887777664 23222211 224556
Q ss_pred EEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEE-Eeccc---CcEEEEEEccCCCeEEEEcCCceEEEEE
Q psy11036 141 LISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHK-FTCHH---KTVTSLCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 141 l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~h~---~~v~~~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
++.++.++.+..+|.. +++.+.. ..... ..........++..++.+..++.|..+|
T Consensus 79 v~v~~~~~~l~~~d~~--------------------tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d 138 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAK--------------------TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALD 138 (238)
T ss_dssp EEEEETTSEEEEEETT--------------------TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEE
T ss_pred cccccceeeeEecccC--------------------CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEe
Confidence 6777788888888876 2333332 12110 1112222333377888888899999999
Q ss_pred ccCCeeeEEecC
Q psy11036 217 MVNFSPVHTLDY 228 (239)
Q Consensus 217 ~~~~~~~~~~~~ 228 (239)
.++|+.+.....
T Consensus 139 ~~tG~~~w~~~~ 150 (238)
T PF13360_consen 139 PKTGKLLWKYPV 150 (238)
T ss_dssp TTTTEEEEEEES
T ss_pred cCCCcEEEEeec
Confidence 999999888763
|
... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00058 Score=52.18 Aligned_cols=177 Identities=12% Similarity=0.127 Sum_probs=105.7
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c-----CCCCEEEEEEecCCcEEEEeCC----------Cc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N-----HGSPVESVLCLPSGGIFVTGGG----------LD 106 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~-----~~~~v~~~~~~~~~~~l~~~~~----------~~ 106 (239)
+.+.++..-. .+..|+++.. -+.+++.+++..+..+ . .....+.....|+|.+.+.... ..
T Consensus 66 ~~~~~~~~~d-~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~ 142 (307)
T COG3386 66 GGFSSGALID-AGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPT 142 (307)
T ss_pred CCcccceeec-CCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCc
Confidence 3344544443 3445554433 3566777656553333 1 2245678888999988775433 01
Q ss_pred EEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecC-CeEEEEEcccceEeeeecceeEEEEEccCC-CEEEEEE
Q psy11036 107 VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD-HHAKIYEMTLKTVSSFTGGLDVCIWDMLGG-GKLLHKF 184 (239)
Q Consensus 107 i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~ 184 (239)
=.+|.+...+...+.+..+-..-+.|+|+||++.|..+... +.|.-|++.... .... ......+
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~--------------g~~~~~~~~~~~ 208 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT--------------GPIGGRRGFVDF 208 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc--------------CccCCcceEEEc
Confidence 13555542355555555555566889999999877776554 677777665100 0001 1112222
Q ss_pred ecccCcEEEEEEccCCCeEEEEcCCc-eEEEEEccCCeeeEEecCC-CCeeeeEe
Q psy11036 185 TCHHKTVTSLCLASGGKRLISASLDH-HAKIYEMVNFSPVHTLDYP-SPVLSIDV 237 (239)
Q Consensus 185 ~~h~~~v~~~~~s~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~~-~~v~~~~~ 237 (239)
....+..-.++...+|.+.+++-.+| .|.+|+.. |+++..+..+ ..+++++|
T Consensus 209 ~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 209 DEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred cCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 23445566778888888776554454 89999987 9999999876 67777776
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.1e-07 Score=74.43 Aligned_cols=144 Identities=13% Similarity=0.197 Sum_probs=106.7
Q ss_pred eeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCC--eEEEE
Q psy11036 78 VMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH--HAKIY 153 (239)
Q Consensus 78 ~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~i~ 153 (239)
...+ .+....+|++|+-..+.+++|. .|.|++|+.. ++........|..+|+-+.-+.+|..+++.+.-. ...+|
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~-sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVS-SGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEcc-CccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 3444 4678899999999999999999 7999999998 8888888999999999999999998777655433 46789
Q ss_pred Ecc--cceEeeee------------------cceeEEEEEccCCCEEEEEEec---ccCcEEEEEEccCCCeEEEEcCCc
Q psy11036 154 EMT--LKTVSSFT------------------GGLDVCIWDMLGGGKLLHKFTC---HHKTVTSLCLASGGKRLISASLDH 210 (239)
Q Consensus 154 d~~--~~~~~~~~------------------~~~~i~~~d~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~s~d~ 210 (239)
++. +...+++. ......+||+.+...+...+.+ .+..-.++.|+|+..+++ .||
T Consensus 1173 ~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG 1249 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG 1249 (1516)
T ss_pred ccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc
Confidence 987 56666652 2344789999885443332322 222336788999988887 455
Q ss_pred eEEEEEccCCeeeEEec
Q psy11036 211 HAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 211 ~i~iwd~~~~~~~~~~~ 227 (239)
.+||++..+.++.+.
T Consensus 1250 --vLWDvR~~~aIh~FD 1264 (1516)
T KOG1832|consen 1250 --VLWDVRIPEAIHRFD 1264 (1516)
T ss_pred --eeeeeccHHHHhhhh
Confidence 469998776666553
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0002 Score=58.86 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=91.0
Q ss_pred CCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC---------------------------------------
Q psy11036 63 YDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--------------------------------------- 103 (239)
Q Consensus 63 ~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------------------------------------- 103 (239)
..+.+.+.|.++.+...++...+....++++|+|+++++.+
T Consensus 213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~ 292 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT 292 (635)
T ss_pred eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence 34567777887777666665445556677788877776663
Q ss_pred --CCcEEEEEccC----CCeEEEEEeccCCceEEEEEcCCCCEEEEEe-cCCeEEEEEcc-cceEeeeecceeEEEEEcc
Q psy11036 104 --GLDVCIWDMLG----GGKLLHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMT-LKTVSSFTGGLDVCIWDML 175 (239)
Q Consensus 104 --~~~i~~~d~~~----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~ 175 (239)
++.|.+.|.+. ..+.+..+. -......+.++|||+++++++ .++++.|+|+. .+.... +. + +.
T Consensus 293 V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~--~~--~---~~- 363 (635)
T PRK02888 293 IGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD--GK--I---KP- 363 (635)
T ss_pred ECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh--cc--C---Cc-
Confidence 13466666652 123444444 334557899999999877655 58999999988 221100 00 0 10
Q ss_pred CCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 176 GGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 176 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
....+.+..- ...-...+|.++|....|--.|..|..|++.+
T Consensus 364 -~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 364 -RDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -cceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1112222222 22334678999998888888999999999876
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.4e-06 Score=41.97 Aligned_cols=38 Identities=37% Similarity=0.507 Sum_probs=33.6
Q ss_pred EEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEE
Q psy11036 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 179 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566678889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00015 Score=60.65 Aligned_cols=173 Identities=17% Similarity=0.221 Sum_probs=109.3
Q ss_pred EEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCC-EEEEEEecCCcEEEEeC-C-C----cEEEEEccCC-----
Q psy11036 49 TVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSP-VESVLCLPSGGIFVTGG-G-L----DVCIWDMLGG----- 115 (239)
Q Consensus 49 ~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~-v~~~~~~~~~~~l~~~~-~-~----~i~~~d~~~~----- 115 (239)
+|++ ++..++.|+.+|.|.+++-. .+.+..+ .++.. |+.+....+..+|++.+ | + .+++|+++..
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 3456 77899999999998887743 3333444 23344 44444444446777666 4 3 5899999732
Q ss_pred CeEE--EEEec-----cCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEeccc
Q psy11036 116 GKLL--HKFTC-----HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH 188 (239)
Q Consensus 116 ~~~~--~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~ 188 (239)
.+.+ +.+.. ...++.+++.+.+-+.+|+|-.+|.|..+.-+ .++.. +........-.
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD--i~RDr--------------gsr~~~~~~~~ 171 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD--ILRDR--------------GSRQDYSHRGK 171 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc--chhcc--------------ccceeeeccCC
Confidence 1222 12222 24578999999999999999999999887543 11111 11122223346
Q ss_pred CcEEEEEEccCCCeEEEEcCCceEEEEEccCCee-eEEec-CCCCeeeeEecC
Q psy11036 189 KTVTSLCLASGGKRLISASLDHHAKIYEMVNFSP-VHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 189 ~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~-~~~~v~~~~~sp 239 (239)
.+|+.+.+..+++.++-...-..|.+|.+....+ +..+. ++.++++.++++
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~ 224 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD 224 (933)
T ss_pred CCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCC
Confidence 7899999999988744444556899999974443 33354 555788777764
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.9e-05 Score=63.92 Aligned_cols=142 Identities=10% Similarity=0.115 Sum_probs=93.9
Q ss_pred CCCEEEE-eeCCCeEEEEeCCCCCceeeecCC--CCEEEEEEec------CCcEEEEeCCCcEEEEEccCCCeEEEEEe-
Q psy11036 54 SSDIVIS-GSYDKTVNVYDTRSPDPVMSVNHG--SPVESVLCLP------SGGIFVTGGGLDVCIWDMLGGGKLLHKFT- 123 (239)
Q Consensus 54 ~~~~l~s-~~~dg~v~vw~~~~~~~~~~~~~~--~~v~~~~~~~------~~~~l~~~~~~~i~~~d~~~~~~~~~~~~- 123 (239)
+.++|+. ......|+-.|++.|+.+..+... .+|..++-.. ..+.++.-+++.+..||.|..+..+..-.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 4444444 345578999999999999888433 3344443221 23455555689999999996553332111
Q ss_pred ---ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC
Q psy11036 124 ---CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG 200 (239)
Q Consensus 124 ---~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~ 200 (239)
......+|++-..+| +||+|+.+|.||+||-- +.+....+.+-..+|.+|..+.||
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~--------------------g~~AKT~lp~lG~pI~~iDvt~DG 630 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL--------------------GKRAKTALPGLGDPIIGIDVTADG 630 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc--------------------chhhhhcCCCCCCCeeEEEecCCC
Confidence 233456777766555 79999999999999843 222233345667899999999999
Q ss_pred CeEEEEcCCceEEEEEc
Q psy11036 201 KRLISASLDHHAKIYEM 217 (239)
Q Consensus 201 ~~l~s~s~d~~i~iwd~ 217 (239)
++++..+ +..+.+++.
T Consensus 631 kwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 631 KWILATC-KTYLLLIDT 646 (794)
T ss_pred cEEEEee-cceEEEEEE
Confidence 9988665 456777765
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.9e-06 Score=63.42 Aligned_cols=88 Identities=13% Similarity=0.204 Sum_probs=68.3
Q ss_pred EEEEeCCCCCceeee-cCCCCEEEEEEecCCc-EEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCC-CEEE
Q psy11036 67 VNVYDTRSPDPVMSV-NHGSPVESVLCLPSGG-IFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLI 142 (239)
Q Consensus 67 v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~ 142 (239)
+++.+..+.+....+ .+...|..++|+|..+ ++..++ +..|++.|++ +...+..+..+ ..+.+++|..+. +++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle-t~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE-TSCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecc-cceeeeheecc-CCceeeeeccCCcceeE
Confidence 555555555554433 4677899999999777 555666 8999999999 77777777776 789999998866 5677
Q ss_pred EEecCCeEEEEEcc
Q psy11036 143 SASLDHHAKIYEMT 156 (239)
Q Consensus 143 ~~~~d~~i~i~d~~ 156 (239)
+|...|.|.+||++
T Consensus 253 aGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMR 266 (463)
T ss_pred EeccCceEEEEEcc
Confidence 88889999999998
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00033 Score=57.51 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=80.4
Q ss_pred eEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec--CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEE
Q psy11036 45 VRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN--HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHK 121 (239)
Q Consensus 45 v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~ 121 (239)
|.--++.. ...+++.|+.-|.+++|+-..++....-. ..+.+..+..+++..++|+|+ .|.|.++.+......-..
T Consensus 36 v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 36 VKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred EEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 43344444 67899999999999999977665443322 344555666777777777777 588999988642221111
Q ss_pred E-----eccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 122 F-----TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 122 ~-----~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
+ +.|...|++++|++++..+.+|...|+|.+-.+.
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 1 2367899999999999999999999999887765
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0011 Score=50.58 Aligned_cols=210 Identities=15% Similarity=0.140 Sum_probs=124.4
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEe----------eCCCeEEEEeCCCCCc
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISG----------SYDKTVNVYDTRSPDP 77 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~----------~~dg~v~vw~~~~~~~ 77 (239)
+.++|+|.++++.+..+...- .-.+..+| +++.+.++ -..-.|.+||..+.++
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~----------------~~~~~~sp-dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~ 79 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF----------------LGNVALSP-DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP 79 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES----------------SEEEEE-T-TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred ceEEEEECCCCcEEEEeeccc----------------CCceeECC-CCCEEEEEEEEEeccccccceeEEEEEecCcCcc
Confidence 589999999999888777653 33466788 67766653 2334699999999887
Q ss_pred eeee--cCC--C----CEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec
Q psy11036 78 VMSV--NHG--S----PVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL 146 (239)
Q Consensus 78 ~~~~--~~~--~----~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 146 (239)
...+ +.+ . ....++++.+++++++.. ...|.|.|+. .++.+.++... +. ...+-...+.+.+-+.
T Consensus 80 ~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~-~~kvv~ei~~P-GC--~~iyP~~~~~F~~lC~ 155 (342)
T PF06433_consen 80 TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLA-AKKVVGEIDTP-GC--WLIYPSGNRGFSMLCG 155 (342)
T ss_dssp EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETT-TTEEEEEEEGT-SE--EEEEEEETTEEEEEET
T ss_pred cceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECC-CCceeeeecCC-CE--EEEEecCCCceEEEec
Confidence 7655 221 1 113357788999888877 5779999998 67777666531 21 1222112245777778
Q ss_pred CCeEEEEEcc--cceEeee---------------------------ecceeEEEEEccCCC-EEEEEEec----------
Q psy11036 147 DHHAKIYEMT--LKTVSSF---------------------------TGGLDVCIWDMLGGG-KLLHKFTC---------- 186 (239)
Q Consensus 147 d~~i~i~d~~--~~~~~~~---------------------------~~~~~i~~~d~~~~~-~~~~~~~~---------- 186 (239)
||.+.-..+. ++..... +-.+.++.-|+.... +.......
T Consensus 156 DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~W 235 (342)
T PF06433_consen 156 DGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGW 235 (342)
T ss_dssp TSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTE
T ss_pred CCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCc
Confidence 8888877776 4433221 112223333443322 11111111
Q ss_pred ccCcEEEEEEccCCCeEEEEc---CCc-------eEEEEEccCCeeeEEecCCCCeeeeEec
Q psy11036 187 HHKTVTSLCLASGGKRLISAS---LDH-------HAKIYEMVNFSPVHTLDYPSPVLSIDVS 238 (239)
Q Consensus 187 h~~~v~~~~~s~~~~~l~s~s---~d~-------~i~iwd~~~~~~~~~~~~~~~v~~~~~s 238 (239)
-.+.-.-+++++..+.|..-- .++ .|.++|+.+++.+.++..+.++.+|+.+
T Consensus 236 rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vs 297 (342)
T PF06433_consen 236 RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVS 297 (342)
T ss_dssp EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEE
T ss_pred CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEc
Confidence 011223356666544444321 122 5888999999999999987888888765
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00045 Score=55.18 Aligned_cols=142 Identities=12% Similarity=0.011 Sum_probs=78.5
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCC-CCCe-EEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTP-QDYV-RAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v-~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 83 (239)
.+|.+.-+|.++|+.+...+..... . .+... ...+ ..+.. .+..++.++.+|.+..+|.++++.+.....
T Consensus 77 ~~g~l~ald~~tG~~~W~~~~~~~~---~--~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 77 RAGLVKALDADTGKEIWSVDLSEKD---G--WFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCCeEEEEECCCCcEeeEEcCCCcc---c--ccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 4577888888888877665443200 0 00000 0001 01222 245666778899999999999998877754
Q ss_pred CCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEE-EEEcC--CCCEEEEEecCCeEEEEEcc
Q psy11036 84 GSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTS-LCLAS--GGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~-i~~~~--~~~~l~~~~~d~~i~i~d~~ 156 (239)
...+.+--.-.++..++...++.+..+|.. +++.+-........... ..-+| .+..++.++.++.+..+|..
T Consensus 149 ~~~~~ssP~v~~~~v~v~~~~g~l~ald~~-tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 149 AGEALSRPVVSDGLVLVHTSNGMLQALNES-DGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CCceecCCEEECCEEEEECCCCEEEEEEcc-CCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 444332111124544444447899999998 77766555432111000 00011 12356667778888887776
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=5e-07 Score=72.58 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=100.4
Q ss_pred CCeEEEEEecCCCCEEEEee----CCCeEEEEeCCCC--Ccee--ee--cCCCCEEEEEEecCCcEEEEeC-CCcEEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGS----YDKTVNVYDTRSP--DPVM--SV--NHGSPVESVLCLPSGGIFVTGG-GLDVCIWD 111 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~----~dg~v~vw~~~~~--~~~~--~~--~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d 111 (239)
.+.++++|++-+.+.|++|- .|..+.|||+.++ .+.. .+ ........++|..+.+.+.+|. ...+.++|
T Consensus 103 r~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifd 182 (783)
T KOG1008|consen 103 RPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFD 182 (783)
T ss_pred ccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhh
Confidence 78999999997778888773 3467999999876 2222 22 2334556888887777887777 57999999
Q ss_pred ccCCCeEEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecc---
Q psy11036 112 MLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH--- 187 (239)
Q Consensus 112 ~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h--- 187 (239)
++........+ ....+..+...| .+.++++-. ||.|.+||...+ -..++..+...
T Consensus 183 lRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rn------------------ienpl~~i~~~~N~ 241 (783)
T KOG1008|consen 183 LRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRN------------------IENPLQIILRNENK 241 (783)
T ss_pred hhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhh------------------hccHHHHHhhCCCC
Confidence 97222222222 234566777888 777887765 999999994300 01111111111
Q ss_pred -cCcEEEEEEccCC-CeEEEEc-CCceEEEEEcc
Q psy11036 188 -HKTVTSLCLASGG-KRLISAS-LDHHAKIYEMV 218 (239)
Q Consensus 188 -~~~v~~~~~s~~~-~~l~s~s-~d~~i~iwd~~ 218 (239)
...+..++|+|.. ..+++.+ ..++|+.||+.
T Consensus 242 ~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 242 KPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 1247889999943 3455555 45789999984
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0012 Score=48.21 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=81.3
Q ss_pred EecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCc
Q psy11036 50 VSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKT 128 (239)
Q Consensus 50 ~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~ 128 (239)
..++...+++.|+..+.+.--|..+|+.........++.+-+.- -|.+++.|. .|.+.+.+.. ++.....+..-..-
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~-tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVK-TGSQIWNFVILETV 95 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEec-chhheeeeeehhhh
Confidence 34445678899999999999999999887665455555554444 366777777 7999999998 77666666543332
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee
Q psy11036 129 VTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163 (239)
Q Consensus 129 i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~ 163 (239)
=......+++..+..++.|++.+..|.+ ..++...
T Consensus 96 k~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred ccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 2334567789999999999999999988 5555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00014 Score=58.37 Aligned_cols=139 Identities=15% Similarity=0.162 Sum_probs=76.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEE-EccCCCeEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIW-DMLGGGKLLHK 121 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~-d~~~~~~~~~~ 121 (239)
-....+.++| +++.++. ..||.-.++.....+.. ..+......|.+.+++.+.-..+.|.++ +.. .+....
T Consensus 33 ~~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~k----~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~--~~~~k~ 104 (443)
T PF04053_consen 33 IYPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRNK----AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFK--NEVVKS 104 (443)
T ss_dssp S--SEEEE-T-TSSEEEE-EETTEEEEEETTTTEEE----EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTE--E-TT--
T ss_pred cCCeeEEECC-CCCEEEE-EcCCEEEEEEccCCccc----ccCceeEEEEecCccEEEEECCCeEEEEEcCc--cccceE
Confidence 4577999999 7888887 45678888883322221 1244556789886665555557889996 332 111122
Q ss_pred EeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC
Q psy11036 122 FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK 201 (239)
Q Consensus 122 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 201 (239)
++. ...+..|-. |..|...+.+ .|.+||+. .++.+..+.. .+|..+.|+++|.
T Consensus 105 i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~--------------------~~~~i~~i~v--~~vk~V~Ws~~g~ 157 (443)
T PF04053_consen 105 IKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWE--------------------TGKLIRRIDV--SAVKYVIWSDDGE 157 (443)
T ss_dssp ----SS-EEEEE----SSSEEEEETT-EEEEE-TT--------------------T--EEEEESS---E-EEEEE-TTSS
T ss_pred EcC-CcccceEEc---CcEEEEECCC-CEEEEEhh--------------------HcceeeEEec--CCCcEEEEECCCC
Confidence 321 123444432 7777777555 78899887 4555555553 3489999999999
Q ss_pred eEEEEcCCceEEEEEc
Q psy11036 202 RLISASLDHHAKIYEM 217 (239)
Q Consensus 202 ~l~s~s~d~~i~iwd~ 217 (239)
+++-.+.+ .+.|++.
T Consensus 158 ~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 158 LVALVTKD-SIYILKY 172 (443)
T ss_dssp EEEEE-S--SEEEEEE
T ss_pred EEEEEeCC-eEEEEEe
Confidence 99888755 6677654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=39.74 Aligned_cols=38 Identities=37% Similarity=0.507 Sum_probs=33.8
Q ss_pred eEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEE
Q psy11036 117 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 154 (239)
Q Consensus 117 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d 154 (239)
+....+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778899999999999999999999999999986
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0008 Score=49.50 Aligned_cols=136 Identities=10% Similarity=0.079 Sum_probs=88.5
Q ss_pred EEEecCCcEEEEeCCCcEEEEEccCCCe-EEEEEeccC---CceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeec
Q psy11036 90 VLCLPSGGIFVTGGGLDVCIWDMLGGGK-LLHKFTCHH---KTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTG 165 (239)
Q Consensus 90 ~~~~~~~~~l~~~~~~~i~~~d~~~~~~-~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 165 (239)
++.+.+|+.||+..|..|.+-..+.... .+.+..... -.=..++|+||+..||.+...|+|++||+.+..+..+..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc
Confidence 5667899999999998888876653322 223333222 345789999999999999999999999998655555522
Q ss_pred ceeEEEEEccCCCEEEEEEecccCcEEEEEEccC------CCeEEEEcCCceEEEEEcc-----CCeeeEEec----CCC
Q psy11036 166 GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG------GKRLISASLDHHAKIYEMV-----NFSPVHTLD----YPS 230 (239)
Q Consensus 166 ~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~------~~~l~s~s~d~~i~iwd~~-----~~~~~~~~~----~~~ 230 (239)
... ....-..+|..|.|-+. ...|+.-..+|.++=|-+. ..+...++. ++.
T Consensus 83 ~~~--------------~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~ 148 (282)
T PF15492_consen 83 AMS--------------FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPH 148 (282)
T ss_pred ccc--------------cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCC
Confidence 110 00112345666666542 1246666678888777653 234444444 567
Q ss_pred CeeeeEecC
Q psy11036 231 PVLSIDVSM 239 (239)
Q Consensus 231 ~v~~~~~sp 239 (239)
.|+++.++|
T Consensus 149 Gi~~~vy~p 157 (282)
T PF15492_consen 149 GINSAVYHP 157 (282)
T ss_pred ceeEEEEcC
Confidence 888888876
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.4e-05 Score=61.45 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=85.4
Q ss_pred CCCCEEEEEEecCCcEEEEeCC-CcEEEEEccCCCe-EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceE
Q psy11036 83 HGSPVESVLCLPSGGIFVTGGG-LDVCIWDMLGGGK-LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTV 160 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~~-~~i~~~d~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 160 (239)
+...+.--+++..+++++.|.+ |.+.+|+-. .++ ......+..+.+..++.+++..++|.|+..|.|.++.+....-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~-~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRH-TGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecC-chhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 3444544556667899999985 999999875 333 2222333455677778899999999999999999998771100
Q ss_pred eeeecceeEEEEEccCCCEEEEE-EecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 161 SSFTGGLDVCIWDMLGGGKLLHK-FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 161 ~~~~~~~~i~~~d~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
.. ...+.. -+.|...|++++|++|+..+++|...|+|..-.+.+
T Consensus 111 ~~---------------~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RD---------------LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred Cc---------------ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 00 000111 123778899999999999999999999999888876
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.3e-06 Score=68.66 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=84.5
Q ss_pred EEEEEEecCCcEEEEeC-----CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEe
Q psy11036 87 VESVLCLPSGGIFVTGG-----GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVS 161 (239)
Q Consensus 87 v~~~~~~~~~~~l~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 161 (239)
-+-..|+|...++++++ .|.|.||-- ++++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfad--tGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~----- 89 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFAD--TGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN----- 89 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEec--CCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecC-----
Confidence 34567999999998886 388998854 454433222 22345679999998889999888999999876
Q ss_pred eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 162 SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 162 ~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
..+.-.....|..+|..+.|||+|..|+|+..-|.|.+|....
T Consensus 90 ---------------~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 90 ---------------TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ---------------CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 2333333467999999999999999999999999999998863
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0025 Score=50.62 Aligned_cols=162 Identities=15% Similarity=0.181 Sum_probs=109.4
Q ss_pred EEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCC----CcEEEEEccCCCeEEEE
Q psy11036 46 RAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGG----LDVCIWDMLGGGKLLHK 121 (239)
Q Consensus 46 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----~~i~~~d~~~~~~~~~~ 121 (239)
..++.++.+.+.++....+..|.+.|..+.+.............++++|+++.+.++.. +.+.+.|.. +.....+
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~-t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA-TNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCC-CCeEEEE
Confidence 46777775555777777779999999888887777755557788999999988887762 667777877 5666666
Q ss_pred EeccCCceEEEEEcCCCCEEEEEe-cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC
Q psy11036 122 FTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG 200 (239)
Q Consensus 122 ~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~ 200 (239)
......+ ..+++.|+|..+.... .++.+.+.|.....+..- ..... ... ...-..+.++|+|
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~------------~~~~~---~~~-~~~P~~i~v~~~g 218 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRG------------SVGSL---VGV-GTGPAGIAVDPDG 218 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecc------------ccccc---ccc-CCCCceEEECCCC
Confidence 5544455 8899999999666554 688898888762111100 00000 111 1223467889998
Q ss_pred CeEEEEcC---CceEEEEEccCCeeeEE
Q psy11036 201 KRLISASL---DHHAKIYEMVNFSPVHT 225 (239)
Q Consensus 201 ~~l~s~s~---d~~i~iwd~~~~~~~~~ 225 (239)
.++..... ++.+...|..++.....
T Consensus 219 ~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 219 NRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 86654433 36888888888777665
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.5e-05 Score=62.93 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=74.8
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCCCEE-EEEEecCCcEEEEeC-CCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVE-SVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~v~-~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~ 119 (239)
..|.-+.|+| .-.++|.+..+|.|.+..+. -+.+.+++ +..+++ +++|.|+|+.+++|- ||+|++.|.. .+..+
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve-~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE-KGGRL 97 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc-CCCce
Confidence 5688999999 89999999999999999988 66777776 667777 999999999999998 8999999999 44444
Q ss_pred EE-EeccCCceEEEEEcC
Q psy11036 120 HK-FTCHHKTVTSLCLAS 136 (239)
Q Consensus 120 ~~-~~~~~~~i~~i~~~~ 136 (239)
.. .......|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 43 334566788888863
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00037 Score=54.74 Aligned_cols=158 Identities=13% Similarity=0.132 Sum_probs=95.9
Q ss_pred CCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEe-c-------c---------C
Q psy11036 64 DKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFT-C-------H---------H 126 (239)
Q Consensus 64 dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~-~-------~---------~ 126 (239)
.+.+.++|+.+++..........+....|+|+|+.++...++.|.++++. .+...+.-. + - -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~-~~~~~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLA-TGQETQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESST-TSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECC-CCCeEEeccccceeEEcCccceecccccc
Confidence 46788999998765444334678899999999999999999999999886 343322111 1 0 1
Q ss_pred CceEEEEEcCCCCEEEEEec-CCeEEEEEcc----c-c---eEeee----ecce----eEEEEEccCCCEEE-EEE---e
Q psy11036 127 KTVTSLCLASGGKRLISASL-DHHAKIYEMT----L-K---TVSSF----TGGL----DVCIWDMLGGGKLL-HKF---T 185 (239)
Q Consensus 127 ~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~----~-~---~~~~~----~~~~----~i~~~d~~~~~~~~-~~~---~ 185 (239)
+.-..+-|+||+++|+.... +..|+.+.+. . . .+..+ .|.. .+.++|+.+..... ... .
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~ 180 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLN 180 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHH
T ss_pred ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccC
Confidence 22366889999999887664 4555555543 1 1 23232 2333 37789997754422 222 1
Q ss_pred cccCcEEEEEEccCCCeEEEE--cCC---ceEEEEEccCCee
Q psy11036 186 CHHKTVTSLCLASGGKRLISA--SLD---HHAKIYEMVNFSP 222 (239)
Q Consensus 186 ~h~~~v~~~~~s~~~~~l~s~--s~d---~~i~iwd~~~~~~ 222 (239)
.-..-+..+.|.++++.|+.. +.+ ..+.++|..+++.
T Consensus 181 ~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 181 PQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET 222 (353)
T ss_dssp TSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred CCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence 234568899999999833332 222 3567778876654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0037 Score=51.41 Aligned_cols=199 Identities=11% Similarity=0.084 Sum_probs=105.8
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCce-eecccee-----eccCCCCCe-EEEEEecCCCCEEEEeeCCC------------
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTT-IYKVPLM-----LYSTPQDYV-RAGTVSPVSSDIVISGSYDK------------ 65 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~v-~~~~~~~~~~~~l~s~~~dg------------ 65 (239)
+.+|.++.+|..+|+.+..++.... ....+.. .+......+ ...++.+ .+..++.++.++
T Consensus 172 ~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~ 250 (488)
T cd00216 172 GVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPG 250 (488)
T ss_pred CCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCC
Confidence 3568899999999998887765320 0000000 000000111 1244454 456666666554
Q ss_pred ------eEEEEeCCCCCceeeecCCC-CE------EEEEEe----cCCc---EEEEeC-CCcEEEEEccCCCeEEEEEec
Q psy11036 66 ------TVNVYDTRSPDPVMSVNHGS-PV------ESVLCL----PSGG---IFVTGG-GLDVCIWDMLGGGKLLHKFTC 124 (239)
Q Consensus 66 ------~v~vw~~~~~~~~~~~~~~~-~v------~~~~~~----~~~~---~l~~~~-~~~i~~~d~~~~~~~~~~~~~ 124 (239)
.|.-+|.++++....+.... .. ....+. -++. .++++. +|.+...|.+ +++.+-....
T Consensus 251 ~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~-tG~~~W~~~~ 329 (488)
T cd00216 251 DNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRT-TGKLISARPE 329 (488)
T ss_pred CCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECC-CCcEeeEeEe
Confidence 79999999999887763111 01 001111 1232 455555 7999999998 7776655432
Q ss_pred cCCceEEEEEcCCCCEEEEEe------------------cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec
Q psy11036 125 HHKTVTSLCLASGGKRLISAS------------------LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC 186 (239)
Q Consensus 125 ~~~~i~~i~~~~~~~~l~~~~------------------~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 186 (239)
. ...++.+| ..+..+. .+|.+.-.|+. + ++.+-+...
T Consensus 330 ~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~-------------------t-G~~~W~~~~ 384 (488)
T cd00216 330 V---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK-------------------T-GKVVWEKRE 384 (488)
T ss_pred e---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCC-------------------C-CcEeeEeeC
Confidence 1 11233333 2233221 23444444444 2 222211111
Q ss_pred c--c------CcE--EEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCCe
Q psy11036 187 H--H------KTV--TSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPV 232 (239)
Q Consensus 187 h--~------~~v--~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v 232 (239)
. . .+. ..+.. .+..|+.++.||.|+.+|.++|+.+.+.+.++.+
T Consensus 385 ~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~ 438 (488)
T cd00216 385 GTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGI 438 (488)
T ss_pred CccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECCCCc
Confidence 0 0 111 11222 4678888999999999999999999988865443
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00026 Score=60.20 Aligned_cols=136 Identities=13% Similarity=0.116 Sum_probs=94.6
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEec----CCCCEEEEeeCCCeEEEEeCCCCC--cee
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSP----VSSDIVISGSYDKTVNVYDTRSPD--PVM 79 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~s~~~dg~v~vw~~~~~~--~~~ 79 (239)
....|+-.|++.|+.+..+..+.. .+|..++-.. ..+..-+.|-.+..+..||.+-.. .+.
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~-------------~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDD-------------IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCC-------------cceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence 346788889999999999998861 2245443321 123445667778889999988542 221
Q ss_pred ----eecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEc
Q psy11036 80 ----SVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 155 (239)
Q Consensus 80 ----~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 155 (239)
.+......+|++-..+|.+.+...+|.|++||-. ..+....+.+...+|..|..+.||+++++.+ +..+.+++.
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1234567788888887755554448999999954 4444455667789999999999999987765 556677776
Q ss_pred c
Q psy11036 156 T 156 (239)
Q Consensus 156 ~ 156 (239)
.
T Consensus 647 ~ 647 (794)
T PF08553_consen 647 L 647 (794)
T ss_pred e
Confidence 4
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.004 Score=48.30 Aligned_cols=131 Identities=11% Similarity=0.084 Sum_probs=82.0
Q ss_pred CEEEEeeCCCc----ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-ceeee-
Q psy11036 8 LIVALWDIPSE----AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD-PVMSV- 81 (239)
Q Consensus 8 g~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-~~~~~- 81 (239)
|.|.++++.+. ..+..+..+. .+++|++++-.. +. |+.+. ++.|.+|++...+ ....-
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~------------~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~ 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTE------------VKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAF 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEE------------ESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEe------------ecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhhe
Confidence 99999999874 2222222111 018899998773 44 44333 4789999998777 33322
Q ss_pred -cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEec--cCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 82 -NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 82 -~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
.....+.++... +.++++|. ...+.++..+.....+..+.. ....++++.+-++++.++.+..+|.+.++...
T Consensus 126 ~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 126 YDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp E-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 344466666655 55888887 577887755533443433332 34468888888666799999999999998876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0049 Score=48.98 Aligned_cols=181 Identities=14% Similarity=0.184 Sum_probs=106.3
Q ss_pred CeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-------------------------------------------ceee
Q psy11036 44 YVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD-------------------------------------------PVMS 80 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-------------------------------------------~~~~ 80 (239)
.|+.+.|.+ +..-|++|...|.|.+|.....+ +...
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 588899998 67788888889999888643211 0001
Q ss_pred e-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEe--c------cCCceEEEEEcC-----CC---CEEE
Q psy11036 81 V-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFT--C------HHKTVTSLCLAS-----GG---KRLI 142 (239)
Q Consensus 81 ~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~--~------~~~~i~~i~~~~-----~~---~~l~ 142 (239)
+ ...++|++++.+.-| ++++|. +|.+.|.|+| ....+..-. . ....++++.|.. |+ -.++
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECC-CCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 1 135789999987544 777776 7999999998 655555422 1 233678888862 33 3688
Q ss_pred EEecCCeEEEEEcc----cceEeee-----------------------------------------------ecceeEEE
Q psy11036 143 SASLDHHAKIYEMT----LKTVSSF-----------------------------------------------TGGLDVCI 171 (239)
Q Consensus 143 ~~~~d~~i~i~d~~----~~~~~~~-----------------------------------------------~~~~~i~~ 171 (239)
+|...|.+.+|.+. +.-...+ ++..++++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999775 1111111 23444666
Q ss_pred EEccCCCEEEEEEecccCcEEEEEEc-----cCCCeEEEEcCCceEEEEEccCCeeeEEecC
Q psy11036 172 WDMLGGGKLLHKFTCHHKTVTSLCLA-----SGGKRLISASLDHHAKIYEMVNFSPVHTLDY 228 (239)
Q Consensus 172 ~d~~~~~~~~~~~~~h~~~v~~~~~s-----~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 228 (239)
+...+.....+.+ ...-....+++- ..+..|++-..+|.|++|.+...+.+..+..
T Consensus 240 ~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 240 FKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp E-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred EeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 6665533333333 221223334442 3466788888999999999999998888774
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00029 Score=56.16 Aligned_cols=139 Identities=13% Similarity=0.158 Sum_probs=94.7
Q ss_pred EEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCc--------EEEEeCCCcEEEEEccCCCe-EEEEEeccC-
Q psy11036 57 IVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGG--------IFVTGGGLDVCIWDMLGGGK-LLHKFTCHH- 126 (239)
Q Consensus 57 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~l~~~~~~~i~~~d~~~~~~-~~~~~~~~~- 126 (239)
+|.++.....++-.|++.|+.+........|.-+.+.|+.+ .|+.-++..|+-||++..+. .+...++|.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 44556666678888999999988886666677777777543 44444578899999986555 333333332
Q ss_pred ---CceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeE
Q psy11036 127 ---KTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 203 (239)
Q Consensus 127 ---~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 203 (239)
....|++-..+ .++++|+.+|.|++||-- ..+....+.+-..+|..+..+.+|+++
T Consensus 428 ~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri--------------------~~~AKTAlPgLG~~I~hVdvtadGKwi 486 (644)
T KOG2395|consen 428 STKNNFSCFATTES-GYIVVGSLKGDIRLYDRI--------------------GRRAKTALPGLGDAIKHVDVTADGKWI 486 (644)
T ss_pred ccccccceeeecCC-ceEEEeecCCcEEeehhh--------------------hhhhhhcccccCCceeeEEeeccCcEE
Confidence 23444444433 589999999999999854 222333356677899999999999998
Q ss_pred EEEcCCceEEEEEc
Q psy11036 204 ISASLDHHAKIYEM 217 (239)
Q Consensus 204 ~s~s~d~~i~iwd~ 217 (239)
+..+ +..+.+-++
T Consensus 487 l~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 487 LATC-KTYLLLIDT 499 (644)
T ss_pred EEec-ccEEEEEEE
Confidence 8665 445555554
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0027 Score=47.06 Aligned_cols=163 Identities=13% Similarity=0.180 Sum_probs=101.8
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCe-EEEEeCCCCCceeee-cCCCC--EEEEEEecCCcEEEEeC---C---CcEEEEEc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKT-VNVYDTRSPDPVMSV-NHGSP--VESVLCLPSGGIFVTGG---G---LDVCIWDM 112 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~-v~vw~~~~~~~~~~~-~~~~~--v~~~~~~~~~~~l~~~~---~---~~i~~~d~ 112 (239)
..-..++++|....-++.+-.-|+ ..++|....+...++ ..++. --.=.|+|+|.+|++.. | |.|-+||.
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 345578888866666676666665 457888877766655 21111 11235899999999875 2 67999999
Q ss_pred cCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEE-EcccceEeeeecceeEEEEEccCCCEEE--EEEe--cc
Q psy11036 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIY-EMTLKTVSSFTGGLDVCIWDMLGGGKLL--HKFT--CH 187 (239)
Q Consensus 113 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~-d~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~--~h 187 (239)
+...+.+.++..|.-.-..+.|.+||+.++.+ +|-|... |.-...+.--+-...+.+.|..+ ++++ .++. .+
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIethpdfgR~~lNldsMePSlvlld~at-G~liekh~Lp~~l~ 224 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETHPDFGRTELNLDSMEPSLVLLDAAT-GNLIEKHTLPASLR 224 (366)
T ss_pred ccccceecccccCCcCcceeEEecCCcEEEEe--CCceecccccCccccchhhcCccEEEEeccc-cchhhhccCchhhh
Confidence 97778888899998888999999999998876 3444444 22111110001111233334222 2222 2222 34
Q ss_pred cCcEEEEEEccCCCeEEEEcC
Q psy11036 188 HKTVTSLCLASGGKRLISASL 208 (239)
Q Consensus 188 ~~~v~~~~~s~~~~~l~s~s~ 208 (239)
...|..+...+||..++.+-.
T Consensus 225 ~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred hcceeeeeeCCCCcEEEEEEe
Confidence 566888888888887776543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0025 Score=53.31 Aligned_cols=106 Identities=13% Similarity=0.016 Sum_probs=60.4
Q ss_pred CCeEEEEEecCCCCEEEEee------CCC--eEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCC-c-EEEEEc
Q psy11036 43 DYVRAGTVSPVSSDIVISGS------YDK--TVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGL-D-VCIWDM 112 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~------~dg--~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~-i~~~d~ 112 (239)
..+...+++| +++.++... .|. .|.+.+.. +.. ..+-.....+.-.|+|+|..+.+..++ . +++.+-
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4577899999 666655433 243 45555542 222 333222347888999998877766532 2 223222
Q ss_pred cCCCeEEE-EEe------ccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy11036 113 LGGGKLLH-KFT------CHHKTVTSLCLASGGKRLISASLDHHAKI 152 (239)
Q Consensus 113 ~~~~~~~~-~~~------~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 152 (239)
...++... .+. .....|..+.|+|||..++... ++.|.+
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 11111110 000 2346799999999999888765 466665
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0019 Score=40.91 Aligned_cols=99 Identities=20% Similarity=0.396 Sum_probs=66.4
Q ss_pred EEEEEEec---CC-cEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEe
Q psy11036 87 VESVLCLP---SG-GIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVS 161 (239)
Q Consensus 87 v~~~~~~~---~~-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 161 (239)
|+++++.. +| ..|++|+ |..|++|+- .+.+.++.. ...|+.++-... ..++.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~---~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~----- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG---DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS----- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC---CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc-----
Confidence 56676654 22 4666666 799999984 567777774 456677766655 679999999999999865
Q ss_pred eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CC---CeEEEEcCCceEE
Q psy11036 162 SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GG---KRLISASLDHHAK 213 (239)
Q Consensus 162 ~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~---~~l~s~s~d~~i~ 213 (239)
.++|-+.+ ...+.++.+.. ++ .-|++|-.+|.|-
T Consensus 72 -------~RlWRiKS-----------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 -------QRLWRIKS-----------KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -------ceeeeecc-----------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 45555443 22355555443 32 3688888888764
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0053 Score=44.95 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=48.7
Q ss_pred CCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEE-EEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 55 SDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVE-SVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 55 ~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
+++++.|...|.+++.+.++|.....+...+.|. .....+++..+..++ |++....|.+ +...+.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~-~~~cVy 129 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPK-TYGCVY 129 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccc-ccceEE
Confidence 5678999999999999999998877774334442 234567888898888 8999988887 443333
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00095 Score=57.57 Aligned_cols=100 Identities=21% Similarity=0.298 Sum_probs=74.4
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCc--eeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceE
Q psy11036 54 SSDIVISGSYDKTVNVYDTRSPDP--VMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVT 130 (239)
Q Consensus 54 ~~~~l~s~~~dg~v~vw~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~ 130 (239)
-+..++.|+..|.+...|+...-. .......++|++++|+.+|+.++.|- +|.|.+||+. .++.++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~-~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH-RAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc-CCcceeeeeecCCccc
Confidence 345788888889998888765322 11124678999999999999999887 7999999998 7788888887777766
Q ss_pred EEEE---cCCCCEEEEEecCCeEEEEEcc
Q psy11036 131 SLCL---ASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 131 ~i~~---~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
.+-+ ..++..++++...|. +|.+.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 6544 334556778777776 56554
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.011 Score=48.67 Aligned_cols=208 Identities=12% Similarity=0.084 Sum_probs=102.4
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeE--EEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVR--AGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 83 (239)
.++.|+-.|..+++.+..++..... ......+. .+... ++..++.++.++.|..+|.++++.+..+..
T Consensus 69 ~~g~l~AlD~~tG~~~W~~~~~~~~--------~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 69 SHSALFALDAATGKVLWRYDPKLPA--------DRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCCcEEEEECCCChhhceeCCCCCc--------cccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 3577788888888877666544200 00000010 11111 226777788899999999999998877743
Q ss_pred CCCE---EEEEEec--CCcEEEEeC----------CCcEEEEEccCCCeEEEEEeccCCc--------------------
Q psy11036 84 GSPV---ESVLCLP--SGGIFVTGG----------GLDVCIWDMLGGGKLLHKFTCHHKT-------------------- 128 (239)
Q Consensus 84 ~~~v---~~~~~~~--~~~~l~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~~-------------------- 128 (239)
.... ..+.-+| .+..++++. ++.+..+|.. +++.+-........
T Consensus 139 ~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~-TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVE-TGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECC-CCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 3221 1111111 123344432 4668888887 66666555432110
Q ss_pred e-EEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec--cc--------CcE-EEEEE
Q psy11036 129 V-TSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC--HH--------KTV-TSLCL 196 (239)
Q Consensus 129 i-~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--h~--------~~v-~~~~~ 196 (239)
+ ...++.+.+..++.++.++..--|..+... ..-...+.+.-+|..+ ++.+-.++. |. .++ ..+.
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~-~~~~~~~~l~Ald~~t-G~~~W~~~~~~~~~~~~~~~s~p~~~~~~- 294 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTP-GDNLYTDSIVALDADT-GKVKWFYQTTPHDLWDYDGPNQPSLADIK- 294 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCC-CCCCceeeEEEEcCCC-CCEEEEeeCCCCCCcccccCCCCeEEecc-
Confidence 0 123444455667777666521000000000 0000011233344433 233222221 11 111 1110
Q ss_pred ccCCC---eEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 197 ASGGK---RLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 197 s~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.-++. .++.++.+|.+...|.++|+++.+..
T Consensus 295 ~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 295 PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 01333 67788899999999999999987654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0079 Score=48.56 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=75.2
Q ss_pred CCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCe------------EEEEE
Q psy11036 55 SDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGK------------LLHKF 122 (239)
Q Consensus 55 ~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~------------~~~~~ 122 (239)
|.+|+..+.+ .|.+||+.+++.+..+.... |..+.|++++.+++..++..+.+++.. .+ .+..+
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~--~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYN--LEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE---HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEec--chhcccccccCchhceEEE
Confidence 6667666554 89999999999999987554 899999999999999998888888764 23 44444
Q ss_pred eccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCe
Q psy11036 123 TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR 202 (239)
Q Consensus 123 ~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 202 (239)
......|.+.+|..+ .++-.+.. .++.+ - ++ ....+.. -..++.-+.+.|..+.
T Consensus 193 ~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~--------~G----------e~~~i~~---ld~~~yllgy~~~~~~ 246 (443)
T PF04053_consen 193 HEISERIKSGCWVED--CFIYTTSN-HLKYL--V--------NG----------ETGIIAH---LDKPLYLLGYLPKENR 246 (443)
T ss_dssp EEE-S--SEEEEETT--EEEEE-TT-EEEEE--E--------TT----------EEEEEEE----SS--EEEEEETTTTE
T ss_pred EEecceeEEEEEEcC--EEEEEcCC-eEEEE--E--------cC----------CcceEEE---cCCceEEEEEEccCCE
Confidence 444678888888655 44444333 55542 1 00 0111111 1345566667776677
Q ss_pred EEEEcCCceEEEEEcc
Q psy11036 203 LISASLDHHAKIYEMV 218 (239)
Q Consensus 203 l~s~s~d~~i~iwd~~ 218 (239)
+.....|+.|..+.+.
T Consensus 247 ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 247 LYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEE-TT--EEEEE--
T ss_pred EEEEECCCCEEEEEEC
Confidence 7777788888777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.7e-05 Score=54.56 Aligned_cols=140 Identities=13% Similarity=0.068 Sum_probs=80.1
Q ss_pred EEEEeeCCCeEEEEeCCCCCceeee--cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEE-
Q psy11036 57 IVISGSYDKTVNVYDTRSPDPVMSV--NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSL- 132 (239)
Q Consensus 57 ~l~s~~~dg~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i- 132 (239)
.+..-+.||.|+-++++.-+.-..- .+...-.-+ .-+..+++|+ +|.|.+|.....+............|.++
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 3444567788888877644321111 111111111 2244555665 89999998763333222222223333333
Q ss_pred EEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEeccc-CcEEEEEEccCCCeEEEE--cCC
Q psy11036 133 CLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH-KTVTSLCLASGGKRLISA--SLD 209 (239)
Q Consensus 133 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~--s~d 209 (239)
.-..++.+.++++.||.|+.|++. ..+.+.....|. .++..+..+..+++++.+ |.|
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~--------------------p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d 168 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIK--------------------PNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHD 168 (238)
T ss_pred ccccccceeEEeccCCceeeeccc--------------------cCceeeeeccccCCCcceeEEecCCceEEeeccccc
Confidence 233455688899999999999988 233333334555 455566666667777777 777
Q ss_pred ceEEEEEccC
Q psy11036 210 HHAKIYEMVN 219 (239)
Q Consensus 210 ~~i~iwd~~~ 219 (239)
..++.|++..
T Consensus 169 ~~~k~W~ve~ 178 (238)
T KOG2444|consen 169 RVLKKWNVEK 178 (238)
T ss_pred hhhhhcchhh
Confidence 7788887753
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.01 Score=44.89 Aligned_cols=178 Identities=15% Similarity=0.193 Sum_probs=101.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee---------------eecCCCCEEEEE---EecCCcEEEEeCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM---------------SVNHGSPVESVL---CLPSGGIFVTGGG 104 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~---------------~~~~~~~v~~~~---~~~~~~~l~~~~~ 104 (239)
..|..+...| +-+.|++-+ |+.+.++++....... .+.....+...+ -......++++..
T Consensus 36 ~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k 113 (275)
T PF00780_consen 36 SSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK 113 (275)
T ss_pred ceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC
Confidence 3499999998 556555543 5999999987554333 222333444444 2224456666667
Q ss_pred CcEEEEEccCC---C-eEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeee---ec-----------c
Q psy11036 105 LDVCIWDMLGG---G-KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSF---TG-----------G 166 (239)
Q Consensus 105 ~~i~~~d~~~~---~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~-----------~ 166 (239)
..|.+|..... . +..+++. ....+..++|. ++.++.|..++ ..+.|+.......+ .. .
T Consensus 114 k~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~ 189 (275)
T PF00780_consen 114 KKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSS 189 (275)
T ss_pred CEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence 89999888642 2 3555555 45778899997 55677776544 67777772111111 11 1
Q ss_pred eeEEEEEccCC----------------CEEE--EEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecC
Q psy11036 167 LDVCIWDMLGG----------------GKLL--HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDY 228 (239)
Q Consensus 167 ~~i~~~d~~~~----------------~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 228 (239)
..+.+..+..+ +++. ..+.- ......+++. ..+|+..+. +.|-||++.+++.++++..
T Consensus 190 ~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 190 KPLGIFQLSDNEFLLCYDNIGVFVNKNGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CceEEEEeCCceEEEEecceEEEEcCCCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 11333333221 1111 11111 1233344443 457776665 5599999999999999985
Q ss_pred CC
Q psy11036 229 PS 230 (239)
Q Consensus 229 ~~ 230 (239)
++
T Consensus 266 ~~ 267 (275)
T PF00780_consen 266 PN 267 (275)
T ss_pred CC
Confidence 44
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.012 Score=44.52 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=91.0
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEE------------
Q psy11036 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHK------------ 121 (239)
Q Consensus 54 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~------------ 121 (239)
.++.|+.|..+| +.+++..............+|..+...|+-+.+++-.|+.+.++++.. -.....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~-l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDS-LEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchh-hccccccccccccccccc
Confidence 577889999988 899999444444444444559999999998889888899999999872 221110
Q ss_pred --EeccCCceEEEE--EcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCC-EEEEEEecccCcEEEEEE
Q psy11036 122 --FTCHHKTVTSLC--LASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG-KLLHKFTCHHKTVTSLCL 196 (239)
Q Consensus 122 --~~~~~~~i~~i~--~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~h~~~v~~~~~ 196 (239)
.......+..++ -...+...++......|.+|..... .... ....++.- ...+..++|
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~----------------~~~f~~~~ke~~l-p~~~~~i~~ 146 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDP----------------RNSFSKLLKEISL-PDPPSSIAF 146 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECC----------------cccccceeEEEEc-CCCcEEEEE
Confidence 111223444444 1123333444445558887776610 0012 33444443 467888888
Q ss_pred ccCCCeEEEEcCCceEEEEEccCCeeeE
Q psy11036 197 ASGGKRLISASLDHHAKIYEMVNFSPVH 224 (239)
Q Consensus 197 s~~~~~l~s~s~d~~i~iwd~~~~~~~~ 224 (239)
. ++.++.|..+ ...+.|+.++....
T Consensus 147 ~--~~~i~v~~~~-~f~~idl~~~~~~~ 171 (275)
T PF00780_consen 147 L--GNKICVGTSK-GFYLIDLNTGSPSE 171 (275)
T ss_pred e--CCEEEEEeCC-ceEEEecCCCCceE
Confidence 8 5566666544 47778887665543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00021 Score=37.93 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=30.8
Q ss_pred cCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeee
Q psy11036 188 HKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPV 223 (239)
Q Consensus 188 ~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~ 223 (239)
...|..++|+|...+||.++.||.|.+|++ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456999999999999999999999999999 66544
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.014 Score=43.69 Aligned_cols=150 Identities=15% Similarity=0.090 Sum_probs=86.2
Q ss_pred CeEEEEEecCCCCEEEEee-CCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEE-ccCCCeEEE
Q psy11036 44 YVRAGTVSPVSSDIVISGS-YDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWD-MLGGGKLLH 120 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~-~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d-~~~~~~~~~ 120 (239)
.+.+.++++ +++.++... .++.-.+|-...+...........+..-.|++++...++.. +....++. .........
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 688999999 566554433 33334444444444444333445788889999988777766 45555553 221111222
Q ss_pred EEecc--CCceEEEEEcCCCCEEEEEe---cCCeEEEEEcc--cce-EeeeecceeEEEEEccCCCEEEEEEecccCcEE
Q psy11036 121 KFTCH--HKTVTSLCLASGGKRLISAS---LDHHAKIYEMT--LKT-VSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVT 192 (239)
Q Consensus 121 ~~~~~--~~~i~~i~~~~~~~~l~~~~---~d~~i~i~d~~--~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~ 192 (239)
..... ...|..+.++|||..++... .++.|.+--+. ..- ...+ ..+..........+.
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l--------------~~~~~~~~~~~~~v~ 169 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL--------------TGPRRVAPPLLSDVT 169 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee--------------ccceEecccccCcce
Confidence 22211 22899999999999887766 34666665443 000 0011 112222223346789
Q ss_pred EEEEccCCCeEEEEcC
Q psy11036 193 SLCLASGGKRLISASL 208 (239)
Q Consensus 193 ~~~~s~~~~~l~s~s~ 208 (239)
.+.|.+++.+++.+..
T Consensus 170 ~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 170 DVAWSDDSTLVVLGRS 185 (253)
T ss_pred eeeecCCCEEEEEeCC
Confidence 9999999887776654
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.02 Score=45.14 Aligned_cols=80 Identities=10% Similarity=0.007 Sum_probs=54.2
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-C--
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-H-- 83 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~-- 83 (239)
.+.+.|||+++++....... . ..+....|+| +++.++-.. ++.|.+.+..+++..+.-. .
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~--------------~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~ 84 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-P--------------PKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEP 84 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-E--------------TTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TT
T ss_pred ceeEEEEecCCCceEECcCC-c--------------cccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccce
Confidence 37889999988765443333 3 7788999999 688877654 5789999987774433211 1
Q ss_pred ---------------CCCEEEEEEecCCcEEEEeC
Q psy11036 84 ---------------GSPVESVLCLPSGGIFVTGG 103 (239)
Q Consensus 84 ---------------~~~v~~~~~~~~~~~l~~~~ 103 (239)
-+.-.++.|+|++++|+...
T Consensus 85 ~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 85 GIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp TEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred eEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 12235788999999998875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00047 Score=59.34 Aligned_cols=62 Identities=26% Similarity=0.272 Sum_probs=48.0
Q ss_pred CCcEEEEeCC-CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 95 SGGIFVTGGG-LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 95 ~~~~l~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
.+..++.+++ |.+...|.+.+-.+...-..-.++|++++|+.+|..++.|-.+|.|.+||+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~ 160 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH 160 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc
Confidence 3556777775 8898888863322233333456799999999999999999999999999998
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0045 Score=54.25 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=83.5
Q ss_pred EEEEEecCCCCEEEEe-----eCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC----CCcEEEEEccCC
Q psy11036 46 RAGTVSPVSSDIVISG-----SYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG----GLDVCIWDMLGG 115 (239)
Q Consensus 46 ~~~~~~~~~~~~l~s~-----~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~----~~~i~~~d~~~~ 115 (239)
+.+.|-- +++++++. ..-+.+++||.+ +....+- +..+.-.+++|-|.|..+++.. ++.|.++.-+
T Consensus 199 ~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-- 274 (1265)
T KOG1920|consen 199 TSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-- 274 (1265)
T ss_pred ceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC--
Confidence 3588887 78888872 222799999977 4332222 3344556899999999999875 4678888754
Q ss_pred CeEEE----EEeccCCceEEEEEcCCCCEEEE---EecCCeEEEEEcc-----cceEeeeecceeEEEEEccCCCEE
Q psy11036 116 GKLLH----KFTCHHKTVTSLCLASGGKRLIS---ASLDHHAKIYEMT-----LKTVSSFTGGLDVCIWDMLGGGKL 180 (239)
Q Consensus 116 ~~~~~----~~~~~~~~i~~i~~~~~~~~l~~---~~~d~~i~i~d~~-----~~~~~~~~~~~~i~~~d~~~~~~~ 180 (239)
+-.-. .+.....++..++|+.++..|++ ......|++|-+. .++...+++. .+..||..+....
T Consensus 275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~-~~~~W~p~~~~~L 350 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK-ALLMWDPVTEKTL 350 (1265)
T ss_pred CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc-ccccccCCCceeE
Confidence 32222 12223345899999999999888 5555669999876 2222233222 2367877654333
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0097 Score=48.58 Aligned_cols=151 Identities=13% Similarity=0.169 Sum_probs=89.9
Q ss_pred CCeEEEEEecCCCCEEEEee--CCCeEEEEeCCCCCceeeecCCCCEEEEEEecC----C-cEEEEeCCCcEEEEEccCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGS--YDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPS----G-GIFVTGGGLDVCIWDMLGG 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~--~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~----~-~~l~~~~~~~i~~~d~~~~ 115 (239)
.++..++|.. +.+.+++.- .+|.+++=|. +.+ +.-+.|..+.|.|- . .+||+-....|.+|.+...
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds---~vi---GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDS---KVI---GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCCc---cEe---eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 5788999985 555666543 2344433221 122 33355889999984 2 3566666899999998621
Q ss_pred ----CeEEEEEe-ccCC----ceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec
Q psy11036 116 ----GKLLHKFT-CHHK----TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC 186 (239)
Q Consensus 116 ----~~~~~~~~-~~~~----~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 186 (239)
.+.+.... .... --..+.|+|....|++-.....-.+++++ ....+....++
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~------------------~d~srVkaDi~- 153 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVH------------------CDSSRVKADIK- 153 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeee------------------eCCceEEEecc-
Confidence 22222211 1111 12457799998888776665554555555 01122223333
Q ss_pred ccCcEEEEEEccCCCeEEEEc-CCceEEEEEccC
Q psy11036 187 HHKTVTSLCLASGGKRLISAS-LDHHAKIYEMVN 219 (239)
Q Consensus 187 h~~~v~~~~~s~~~~~l~s~s-~d~~i~iwd~~~ 219 (239)
..+-|.|.+|.+||+.|+.+- ..=.-+|||-..
T Consensus 154 ~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 154 TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 367799999999999887653 334568898643
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.02 Score=42.80 Aligned_cols=170 Identities=12% Similarity=0.066 Sum_probs=103.4
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec--CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN--HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~ 119 (239)
..+.++.|+| +.+.|++......-.|+=..+|+.+.+++ .-.....+.+..++++.++-. ++.+.++.+......+
T Consensus 86 ~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 86 ANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 5699999999 56666665666666677777898888874 334456778887776666665 6888887776332211
Q ss_pred E---------EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccC
Q psy11036 120 H---------KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHK 189 (239)
Q Consensus 120 ~---------~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~ 189 (239)
. .....+.....++|.|..+.|..+-+..-+.||.+. ....... .+- ....... .-.-.
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~------~~~---~~~~~~~--~~f~~ 233 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV------HAS---LDPTADR--DLFVL 233 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccc------ccc---cCccccc--ceEee
Confidence 1 111125577899999999989988888889888877 1101000 000 0000000 00123
Q ss_pred cEEEEEEcc-CCCeEEEEcCCceEEEEEccCCeeeEE
Q psy11036 190 TVTSLCLAS-GGKRLISASLDHHAKIYEMVNFSPVHT 225 (239)
Q Consensus 190 ~v~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~ 225 (239)
.|.++.|.+ .+.+|+-+.+++.+.-.|. .|+++..
T Consensus 234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~ 269 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIEL 269 (316)
T ss_pred ccccceecCCCCcEEEEecCCceEEEEec-CCCeeee
Confidence 467788887 4555566666777777766 3444433
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=6.2e-05 Score=63.40 Aligned_cols=110 Identities=11% Similarity=0.144 Sum_probs=67.8
Q ss_pred CEEEEeeCC--CcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCC
Q psy11036 8 LIVALWDIP--SEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHG 84 (239)
Q Consensus 8 g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~ 84 (239)
|...||+++ .|+....+..+. ...+..+...|.-+-|-+ +.-++..+-.++++++.+..+... ..+ .|.
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~------~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs 224 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTP------ITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIRLLNINRALR-SLFRSHS 224 (1283)
T ss_pred hhhheeehHhhccccccceEEee------cCcCCCCcceeeeccccc-ccceeeeccCCCceeEeeechHHH-HHHHhcC
Confidence 778889875 455444443332 122222224444444445 556777788889999888765433 222 477
Q ss_pred CCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 85 SPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
..+..+++-..|-..+.+ ++|||..+++.+.||.++.|.+.
T Consensus 225 ~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 225 QRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CCcccHHHHhhchhhhee-------------------------------eCCCCcEEEEeecCCccceeeee
Confidence 777777765544222111 78899999999999998888765
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.038 Score=41.02 Aligned_cols=183 Identities=10% Similarity=0.037 Sum_probs=92.9
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC---ce---
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD---PV--- 78 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~---~~--- 78 (239)
...+.|.-++. +|+.++.+..... +..-.+++.. ++.++++.-.++.+.++++.... ..
T Consensus 41 d~~~~i~els~-~G~vlr~i~l~g~-------------~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~ 105 (248)
T PF06977_consen 41 DEPGEIYELSL-DGKVLRRIPLDGF-------------GDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTTSLDRADV 105 (248)
T ss_dssp TTTTEEEEEET-T--EEEEEE-SS--------------SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----TT--EEEE
T ss_pred CCCCEEEEEcC-CCCEEEEEeCCCC-------------CCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccccccchhhc
Confidence 34577777776 4777776654321 5678888876 56666655568999999884322 11
Q ss_pred eee--c----CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccC--CCeEEEEE--e------ccCCceEEEEEcCCC-CE
Q psy11036 79 MSV--N----HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLG--GGKLLHKF--T------CHHKTVTSLCLASGG-KR 140 (239)
Q Consensus 79 ~~~--~----~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~--~~~~~~~~--~------~~~~~i~~i~~~~~~-~~ 140 (239)
..+ . ....+..++|+|.+..|+++. ..-..+|.++. ....+... . .....+.+++++|.. ++
T Consensus 106 ~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~l 185 (248)
T PF06977_consen 106 QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHL 185 (248)
T ss_dssp EEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEE
T ss_pred eEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeE
Confidence 112 1 345689999999877777777 45566666652 12122111 1 123467889999954 56
Q ss_pred EEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEE
Q psy11036 141 LISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIY 215 (239)
Q Consensus 141 l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iw 215 (239)
++....+..+..+|..++.+..+ .+.....- +...-..--.++|.++|++.+++ +-+..++|
T Consensus 186 liLS~es~~l~~~d~~G~~~~~~---------~L~~g~~g---l~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 186 LILSDESRLLLELDRQGRVVSSL---------SLDRGFHG---LSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEETTTTEEEEE-TT--EEEEE---------E-STTGGG----SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred EEEECCCCeEEEECCCCCEEEEE---------EeCCcccC---cccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 66677788888888664332222 11110000 00001235688999999765544 56655554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0014 Score=34.74 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=28.6
Q ss_pred CCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 126 HKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 126 ~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
...|..++|+|....+|.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999886
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.01 Score=47.80 Aligned_cols=132 Identities=15% Similarity=0.199 Sum_probs=91.2
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCC------CCEEEEeeCCCeEEEEeCCCCCc-ee
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVS------SDIVISGSYDKTVNVYDTRSPDP-VM 79 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~dg~v~vw~~~~~~~-~~ 79 (239)
...++-.|++.|+.+.+.+.+. + |.-+.+.|+. ...-+.|-.|..|.-||.+-... ..
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~--------------d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFED--------------D-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred cCcceeeecccceeeeEeeccC--------------C-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 3566677899999999998885 3 6666666631 12234467788899999873322 11
Q ss_pred ------eecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy11036 80 ------SVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 152 (239)
Q Consensus 80 ------~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 152 (239)
.+.......|.+-..+| ++++|+ +|.|++||-- ..+...-+++...+|..+..+.+|++++..+ +..+.+
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlL 496 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLL 496 (644)
T ss_pred eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhh-hhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEE
Confidence 11234456677766666 555555 8999999974 5555566788889999999999999877654 667777
Q ss_pred EEcc
Q psy11036 153 YEMT 156 (239)
Q Consensus 153 ~d~~ 156 (239)
.++.
T Consensus 497 i~t~ 500 (644)
T KOG2395|consen 497 IDTL 500 (644)
T ss_pred EEEe
Confidence 7765
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.044 Score=39.72 Aligned_cols=140 Identities=11% Similarity=0.109 Sum_probs=81.0
Q ss_pred CCCEEEEEEecCCcEEEEeC-C---------CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEE-EEecCCeEEE
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-G---------LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLI-SASLDHHAKI 152 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~---------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~i 152 (239)
+.+.+.-..+|+|++++... + |.++.|-.. ++ +..+...-.--..++|+.+.+.+. +-+.+-.|.-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQ-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CC-ceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 45667777899999954332 2 223333321 11 111221222335678877665544 4455667777
Q ss_pred EEcc--cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCC-
Q psy11036 153 YEMT--LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYP- 229 (239)
Q Consensus 153 ~d~~--~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~- 229 (239)
||.+ +..+. ..-.++|++.. ++...+. .-.++...+|.+.+++-..++|...|..+|+.+.++..+
T Consensus 185 ~dyd~~tG~~s-----nr~~i~dlrk~-~~~e~~~-----PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt 253 (310)
T KOG4499|consen 185 YDYDCPTGDLS-----NRKVIFDLRKS-QPFESLE-----PDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT 253 (310)
T ss_pred eecCCCccccc-----CcceeEEeccC-CCcCCCC-----CCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC
Confidence 8754 11110 11234555442 1111111 123445667888888888899999999999999999955
Q ss_pred CCeeeeEe
Q psy11036 230 SPVLSIDV 237 (239)
Q Consensus 230 ~~v~~~~~ 237 (239)
..++++||
T Consensus 254 ~qitsccF 261 (310)
T KOG4499|consen 254 PQITSCCF 261 (310)
T ss_pred CceEEEEe
Confidence 47999988
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.033 Score=46.71 Aligned_cols=149 Identities=9% Similarity=0.109 Sum_probs=72.5
Q ss_pred CCCEEEEeeCCC-----eEEEEeCCCCCceee--ecCCCCEEEEEEecCCcEEEEeC-CC--------------------
Q psy11036 54 SSDIVISGSYDK-----TVNVYDTRSPDPVMS--VNHGSPVESVLCLPSGGIFVTGG-GL-------------------- 105 (239)
Q Consensus 54 ~~~~l~s~~~dg-----~v~vw~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~~-------------------- 105 (239)
++.+.+.||.++ ++..||..+.+.... +.....-.+++ .-++...+.|+ ++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCccccccccccccccccccccc
Confidence 577888888764 488899887654321 11111111122 22577777776 32
Q ss_pred ---cEEEEEccCCCeE--EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccC-C-C
Q psy11036 106 ---DVCIWDMLGGGKL--LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLG-G-G 178 (239)
Q Consensus 106 ---~i~~~d~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~-~-~ 178 (239)
.+..||.. ..+- +..+.........+.+ +++..+.|+.++.-. ....+..||..+ + -
T Consensus 430 ~~~~ve~YDP~-td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~-------------~~~~ve~Ydp~~~~~W 493 (557)
T PHA02713 430 SSNKVIRYDTV-NNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKN-------------VKTCIFRYNTNTYNGW 493 (557)
T ss_pred ccceEEEECCC-CCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCc-------------cceeEEEecCCCCCCe
Confidence 36667776 2221 1111111111111222 456666666542100 001134455544 1 2
Q ss_pred EEEEEEecccCcEEEEEEccCCCeEEEEcCCc--eEEEEEccCCe
Q psy11036 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDH--HAKIYEMVNFS 221 (239)
Q Consensus 179 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~--~i~iwd~~~~~ 221 (239)
..+..+.........+++ +|++.++|+.|+ .+-.||..+.+
T Consensus 494 ~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 494 ELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 333333332333333333 688889999888 67778876644
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.042 Score=46.12 Aligned_cols=119 Identities=13% Similarity=0.219 Sum_probs=73.3
Q ss_pred CEEEEEEecCCcEEEEeCC-CcEEEEEccCCCeEEEEEe-ccCCceEEEEEc--CCCCEEEEEecCCeEEEEEcc-cceE
Q psy11036 86 PVESVLCLPSGGIFVTGGG-LDVCIWDMLGGGKLLHKFT-CHHKTVTSLCLA--SGGKRLISASLDHHAKIYEMT-LKTV 160 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~~-~~i~~~d~~~~~~~~~~~~-~~~~~i~~i~~~--~~~~~l~~~~~d~~i~i~d~~-~~~~ 160 (239)
...-+.-+.-++..++..+ ..+.|||.+ .+....+-. ...+.|.++.|. |+++.+++.|..+.|.++.-. ..-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~-~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTR-SGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcC-CcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 3444445555555555554 679999998 444332222 457889999985 688999999999999998653 1111
Q ss_pred eeeecceeEEEEEccCCCEEEEEEeccc-CcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 161 SSFTGGLDVCIWDMLGGGKLLHKFTCHH-KTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 161 ~~~~~~~~i~~~d~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
.....-..++-.|+ ..|+ .+|.+..|.++|.+++.+ .+.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i----------~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDI----------SSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEe----------ecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 11111111222222 2333 679999999999877655 357888764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0034 Score=44.93 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=59.9
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCcee-eec-CCCCEEEE-EEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccC-Cc
Q psy11036 54 SSDIVISGSYDKTVNVYDTRSPDPVM-SVN-HGSPVESV-LCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHH-KT 128 (239)
Q Consensus 54 ~~~~l~s~~~dg~v~vw~~~~~~~~~-~~~-~~~~v~~~-~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-~~ 128 (239)
.+.-++.|+.+|.|.+|+........ .+. ....+-++ .--.++.+..++. ++.|+.|++. ..+.+.....|. .+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~-p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK-PNKVLGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccc-cCceeeeeccccCCC
Confidence 45678899999999999986222111 111 12223222 2222344555555 8999999998 777776666666 44
Q ss_pred eEEEEEcCCCCEEEEE--ecCCeEEEEEcc
Q psy11036 129 VTSLCLASGGKRLISA--SLDHHAKIYEMT 156 (239)
Q Consensus 129 i~~i~~~~~~~~l~~~--~~d~~i~i~d~~ 156 (239)
+.....+..++.++.. +.|..++.|++.
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchh
Confidence 4444444444555555 555555555554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.093 Score=40.36 Aligned_cols=140 Identities=14% Similarity=0.148 Sum_probs=81.8
Q ss_pred CeEEEEEecCCCCEEEEeeC-----------CCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC--CCcEEE
Q psy11036 44 YVRAGTVSPVSSDIVISGSY-----------DKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG--GLDVCI 109 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~-----------dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~~~i~~ 109 (239)
..+.+...| ++.+-++... -|.|+.++. .+..++.+ .+-...+.++|+|+++.++.+. .+.|.-
T Consensus 112 r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 112 RPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 344666677 5555554333 133433343 34444444 3355567899999999888887 377888
Q ss_pred EEccC-CC-----eEEEEEeccCCceEEEEEcCCCCEEEEEecCC-eEEEEEcccceEeeeecceeEEEEEccCCCEEEE
Q psy11036 110 WDMLG-GG-----KLLHKFTCHHKTVTSLCLASGGKRLISASLDH-HAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLH 182 (239)
Q Consensus 110 ~d~~~-~~-----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 182 (239)
|++.. .. .....+....+..-.++...+|.+.+++..+| .|.+|+.+ ++++.
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd---------------------G~l~~ 248 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD---------------------GKLLG 248 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC---------------------CcEEE
Confidence 87751 11 11222223345556677777777765444443 77777765 55555
Q ss_pred EEecccCcEEEEEEcc-CCCeEEEE
Q psy11036 183 KFTCHHKTVTSLCLAS-GGKRLISA 206 (239)
Q Consensus 183 ~~~~h~~~v~~~~~s~-~~~~l~s~ 206 (239)
.+.-....+++++|-- +.+.|+..
T Consensus 249 ~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 249 EIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred EEECCCCCCccceEeCCCcCEEEEE
Confidence 5566657788888863 44544433
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.028 Score=44.78 Aligned_cols=110 Identities=14% Similarity=0.036 Sum_probs=69.9
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEe--eeec------------ceeEEEEEccC--------CCEEEEEE
Q psy11036 128 TVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVS--SFTG------------GLDVCIWDMLG--------GGKLLHKF 184 (239)
Q Consensus 128 ~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~--~~~~------------~~~i~~~d~~~--------~~~~~~~~ 184 (239)
.|+.+.|.++...|+++...|.|.||... .+... .... +..-.+-|+.. +-.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999999887 22221 1101 11233444432 23455566
Q ss_pred ecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecC---------CCCeeeeEec
Q psy11036 185 TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDY---------PSPVLSIDVS 238 (239)
Q Consensus 185 ~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---------~~~v~~~~~s 238 (239)
+...++|++++.| |=.++|.|..+|.+.|.|++....+..-.. ...++++.|+
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence 6678999999997 667999999999999999998888776431 2357777774
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.13 Score=43.32 Aligned_cols=107 Identities=13% Similarity=0.043 Sum_probs=63.5
Q ss_pred eEEEEEecCCCCEEEEeeCC------------CeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEE---
Q psy11036 45 VRAGTVSPVSSDIVISGSYD------------KTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCI--- 109 (239)
Q Consensus 45 v~~~~~~~~~~~~l~s~~~d------------g~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~--- 109 (239)
.+.-.|+| ++..+++.... +.+.+.++..+.... ...+.|..+.|+|||..++...++.|.+
T Consensus 399 ~t~PsWsp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~V 475 (591)
T PRK13616 399 LTRPSWSL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVV 475 (591)
T ss_pred CCCceECC-CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEE
Confidence 67888999 66655554322 233333444433322 3356799999999999998877777776
Q ss_pred EEccCCCe-EE---EEEe-ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 110 WDMLGGGK-LL---HKFT-CHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 110 ~d~~~~~~-~~---~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
-... .+. .+ ..+. .-...+..+.|..++.+ +++..++...+|.+.
T Consensus 476 vr~~-~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 476 EQTE-DGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVN 525 (591)
T ss_pred EeCC-CCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEe
Confidence 3322 332 11 1122 22334688999988875 455555544455444
|
|
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.03 Score=47.08 Aligned_cols=191 Identities=13% Similarity=0.083 Sum_probs=101.2
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee--ec---
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS--VN--- 82 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~--~~--- 82 (239)
-.|+|+++ +|+++..+.-.. +.+..+.|+. .+.|+.-..+|++.+|++-.. .+.. ++
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~--------------~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~ 125 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKH--------------GELIGMGWSD--DEELICVQKDGTVHVYGLLGE-FIESNSVGFES 125 (829)
T ss_pred eeEEEEec-cccchHHHHhcC--------------CCeeeecccC--CceEEEEeccceEEEeecchh-hhccccccccc
Confidence 35778886 666666655544 6788999996 456666789999999998532 2222 21
Q ss_pred CCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEec---cCCceEEEEEcCCCC---EEEEEe-cCCeEEEEEc
Q psy11036 83 HGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTC---HHKTVTSLCLASGGK---RLISAS-LDHHAKIYEM 155 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~i~~i~~~~~~~---~l~~~~-~d~~i~i~d~ 155 (239)
....|..+.+..+|-.+.+.++.-+.+-+.. .....+++. ...+-.+-...+++. .++-.. ..+ ..++..
T Consensus 126 ~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~--~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~ 202 (829)
T KOG2280|consen 126 QMSDIVECRFFHNGVAVLTVSGQVILINGVE--EPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQV 202 (829)
T ss_pred ccCceeEEEEecCceEEEecCCcEEEEcCCC--cchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccce
Confidence 2344555666555644444333333333332 222233322 111112222222211 111111 000 001111
Q ss_pred ccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec--CCCCee
Q psy11036 156 TLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD--YPSPVL 233 (239)
Q Consensus 156 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~v~ 233 (239)
. ........+....+.+..+..||+.++|+--..+|.|.+-+....+.+..++ ...+..
T Consensus 203 ~-------------------~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~ 263 (829)
T KOG2280|consen 203 E-------------------ESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPK 263 (829)
T ss_pred e-------------------cccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchH
Confidence 0 0111112222223567889999999999999999999999888777777776 333444
Q ss_pred eeEec
Q psy11036 234 SIDVS 238 (239)
Q Consensus 234 ~~~~s 238 (239)
.|+|+
T Consensus 264 qm~Wc 268 (829)
T KOG2280|consen 264 QMAWC 268 (829)
T ss_pred hceee
Confidence 66663
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.16 Score=40.89 Aligned_cols=38 Identities=8% Similarity=0.137 Sum_probs=31.3
Q ss_pred CCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee
Q psy11036 126 HKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF 163 (239)
Q Consensus 126 ~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~ 163 (239)
.+++..|+.||+++++|.-..+|.+.+.+.+ .+.+..+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence 4689999999999999999999999998877 4444444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.091 Score=41.86 Aligned_cols=126 Identities=10% Similarity=0.042 Sum_probs=62.1
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecC-CCCE-EEEeeCCCeEEEEe-CCCCCc----eee
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV-SSDI-VISGSYDKTVNVYD-TRSPDP----VMS 80 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~-l~s~~~dg~v~vw~-~~~~~~----~~~ 80 (239)
..+.+||+.+.+.++++.....- .....+.|..+ +..+ ++.+....+|-.|- .+.++. +..
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g------------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ 289 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEG------------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID 289 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTE------------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE
T ss_pred CeEEEEECCCCcEeeEEecCCCC------------CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE
Confidence 58999999999999999876410 23445666542 2222 33333334444433 233321 111
Q ss_pred ec------------------CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEe---c-------------
Q psy11036 81 VN------------------HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFT---C------------- 124 (239)
Q Consensus 81 ~~------------------~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~---~------------- 124 (239)
+. .+.-++.|..|.|.++|.++. .|.++-||+.....+...-+ +
T Consensus 290 ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g 369 (461)
T PF05694_consen 290 IPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKG 369 (461)
T ss_dssp E--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS--
T ss_pred CCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccc
Confidence 21 134579999999999999998 79999999986554433221 1
Q ss_pred --cCCceEEEEEcCCCCEEEEEe
Q psy11036 125 --HHKTVTSLCLASGGKRLISAS 145 (239)
Q Consensus 125 --~~~~i~~i~~~~~~~~l~~~~ 145 (239)
-.+...-+..|.||+.|....
T Consensus 370 ~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 370 KRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----S----EEE-TTSSEEEEE-
T ss_pred cccCCCCCeEEEccCCeEEEEEe
Confidence 112235677778887766543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.29 Score=42.68 Aligned_cols=213 Identities=12% Similarity=0.094 Sum_probs=109.0
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEec---------------CCCCEEEEeeCCCeEEEE
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSP---------------VSSDIVISGSYDKTVNVY 70 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------------~~~~~l~s~~~dg~v~vw 70 (239)
.++.|+-.|.++|+.+..+........... ......+++.. ..+..++.++.|+.+.-.
T Consensus 202 ~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~------~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 202 PHNKVIALDAATGKEKWKFDPKLKTEAGRQ------HQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCcccccc------cccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 357788889999998887765431000000 00011222221 134577888899999999
Q ss_pred eCCCCCceeeecCCCCEE-------------EEEEec--CCcEEEEeC-----------CCcEEEEEccCCCeEEEEEec
Q psy11036 71 DTRSPDPVMSVNHGSPVE-------------SVLCLP--SGGIFVTGG-----------GLDVCIWDMLGGGKLLHKFTC 124 (239)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~-----------~~~i~~~d~~~~~~~~~~~~~ 124 (239)
|.++++....+...+.+. .+.-.| .+..+++++ +|.|+-+|.+ +++.+-.+..
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~-TGkl~W~~~~ 354 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVN-TGALVWAWDP 354 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECC-CCcEeeEEec
Confidence 999999887764433321 111122 123444442 3679999998 7777665542
Q ss_pred cCCce------------------EEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec
Q psy11036 125 HHKTV------------------TSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC 186 (239)
Q Consensus 125 ~~~~i------------------~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 186 (239)
-.... ..+++.++...+..+......-.|.-..... .-.-...+.-.|.++ ++..-.++.
T Consensus 355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~-~n~y~~slvALD~~T-Gk~~W~~Q~ 432 (764)
T TIGR03074 355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPA-DEKYSSSLVALDATT-GKERWVFQT 432 (764)
T ss_pred CCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccC-cccccceEEEEeCCC-CceEEEecc
Confidence 11000 1122233222322222211111111100000 000122366667766 444444433
Q ss_pred ccCcE---------EEEEEcc-CCC---eEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 187 HHKTV---------TSLCLAS-GGK---RLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 187 h~~~v---------~~~~~s~-~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
..+.+ .-+.+.. +|+ .++.++.+|.+.++|.++|+++...+
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 11111 1122322 553 78899999999999999999988765
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.16 Score=38.98 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=75.7
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce-eeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV-MSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHK 121 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~ 121 (239)
+.+..+.-++ ++.+++++.......-|+--...-. .......++..|.|.|++.+.+++..|.|+.=+.....+....
T Consensus 145 gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~ 223 (302)
T PF14870_consen 145 GSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE 223 (302)
T ss_dssp --EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE--
T ss_pred ceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc
Confidence 6788888888 7888888766555556764322221 1224578999999999999888887888888773212222222
Q ss_pred --Ee--ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEe---cccCcEEEE
Q psy11036 122 --FT--CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFT---CHHKTVTSL 194 (239)
Q Consensus 122 --~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~h~~~v~~~ 194 (239)
.. ...-.+..++|.+++...++|+. |.+.. ..+ .++.-.... .-...+..+
T Consensus 224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~D--------------------gGktW~~~~~~~~~~~n~~~i 281 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STD--------------------GGKTWQKDRVGENVPSNLYRI 281 (302)
T ss_dssp -B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESS--------------------TTSS-EE-GGGTTSSS---EE
T ss_pred ccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCC--------------------CCccceECccccCCCCceEEE
Confidence 11 12234789999988777776654 43322 222 122111111 123457788
Q ss_pred EEccCCCeEEEEcCCceEEEE
Q psy11036 195 CLASGGKRLISASLDHHAKIY 215 (239)
Q Consensus 195 ~~s~~~~~l~s~s~d~~i~iw 215 (239)
.|.++.+-++. +.+|.|.-|
T Consensus 282 ~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 282 VFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp EEEETTEEEEE--STTEEEEE
T ss_pred EEcCCCceEEE-CCCcEEEEe
Confidence 88766555554 467877654
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.074 Score=43.03 Aligned_cols=142 Identities=13% Similarity=0.140 Sum_probs=91.8
Q ss_pred CCCEEE-EeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecC--------CcEEEEeCCCcEEEEEccCCCeEEEEEec
Q psy11036 54 SSDIVI-SGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPS--------GGIFVTGGGLDVCIWDMLGGGKLLHKFTC 124 (239)
Q Consensus 54 ~~~~l~-s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~l~~~~~~~i~~~d~~~~~~~~~~~~~ 124 (239)
+..+|. .|+....+.-.|++.|+.+........+ -+.|.|. .+.|+..++..|.-.|.+..+..+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e- 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE- 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-
Confidence 444444 4555567777888888888877655555 5677764 3456666677788788886664443332
Q ss_pred cCCceEEEEEcC----CCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC
Q psy11036 125 HHKTVTSLCLAS----GGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG 200 (239)
Q Consensus 125 ~~~~i~~i~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~ 200 (239)
.....+.-.|+. ...++|+++..|.|++||-- +......+.+-..+|..+..+.+|
T Consensus 556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi--------------------g~rAKtalP~lG~aIk~idvta~G 615 (776)
T COG5167 556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI--------------------GKRAKTALPGLGDAIKHIDVTANG 615 (776)
T ss_pred ehhccccccccccccccCceEEEecCCCceeeehhh--------------------cchhhhcCcccccceeeeEeecCC
Confidence 122223333332 45689999999999999865 222223345556789999999999
Q ss_pred CeEEEEcCCceEEEEEcc
Q psy11036 201 KRLISASLDHHAKIYEMV 218 (239)
Q Consensus 201 ~~l~s~s~d~~i~iwd~~ 218 (239)
+++++.+. ..+.+-|+.
T Consensus 616 k~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 616 KHILATCK-NYLLLTDVP 632 (776)
T ss_pred cEEEEeec-ceEEEEecc
Confidence 98876664 466666653
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.13 Score=36.99 Aligned_cols=130 Identities=15% Similarity=0.208 Sum_probs=72.5
Q ss_pred CEEEEEEecCCcEEEEeCCCcEEEEEcc-CCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCC------eEEEE-Ecc-
Q psy11036 86 PVESVLCLPSGGIFVTGGGLDVCIWDML-GGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH------HAKIY-EMT- 156 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~------~i~i~-d~~- 156 (239)
....++..+.+.++++++...|.+|++. ...++..++..- +.|..+.++..|+++++--++. .+|+| +.+
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence 3444444444455555667889999997 345566677654 7889999999999999965432 45554 222
Q ss_pred ----cceEe-eeecceeEEEEEcc--CCCEEEEEEecccCcEEEEEEcc-CCCeEEEEcCCceEEEEEccCC
Q psy11036 157 ----LKTVS-SFTGGLDVCIWDML--GGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMVNF 220 (239)
Q Consensus 157 ----~~~~~-~~~~~~~i~~~d~~--~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~ 220 (239)
...+. .+.|.. +.--..+ ...-.+-++.- ..++.+++..| .|++++ |+ ++++.+|.+...
T Consensus 98 ~~~~~~~v~vRiaG~~-v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHR-VTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQ 165 (215)
T ss_pred hcccCCcEEEEEcccc-cccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEE
Confidence 11111 111110 0000000 00112223332 55678888888 455544 54 568889987543
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.083 Score=34.79 Aligned_cols=106 Identities=8% Similarity=0.107 Sum_probs=70.1
Q ss_pred EEEecCCCCEEEEeeCCCeEEEEeCCC--------CCceeeecCCCCEEEEEEec-----CCcEEEEeCCCcEEEEEccC
Q psy11036 48 GTVSPVSSDIVISGSYDKTVNVYDTRS--------PDPVMSVNHGSPVESVLCLP-----SGGIFVTGGGLDVCIWDMLG 114 (239)
Q Consensus 48 ~~~~~~~~~~l~s~~~dg~v~vw~~~~--------~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~i~~~d~~~ 114 (239)
-.|.. ....|+.++.-|.|.|++... ...+..+.....|++++--+ ....|+.|+...+..||+..
T Consensus 4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 34554 345677778888999998653 23455667778888887654 35688888999999999985
Q ss_pred CCeEEEEEeccCCceEEEEEcC---CCCEEEEEecCCeEEEEEcc
Q psy11036 115 GGKLLHKFTCHHKTVTSLCLAS---GGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 115 ~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~d~~i~i~d~~ 156 (239)
......+ .-...+.++.+-. ...-++..+.+..|.-||.+
T Consensus 83 N~d~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 83 NSDLFYK--EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred Cchhhhh--hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 5444432 2346677777633 22345555556777777776
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.35 Score=40.80 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=76.7
Q ss_pred CCCEEEEeeCCC-----eEEEEeCCCCCceeeecCCCCEEEEEE-ecCCcEEEEeC-C------CcEEEEEccCCC-eEE
Q psy11036 54 SSDIVISGSYDK-----TVNVYDTRSPDPVMSVNHGSPVESVLC-LPSGGIFVTGG-G------LDVCIWDMLGGG-KLL 119 (239)
Q Consensus 54 ~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~-~------~~i~~~d~~~~~-~~~ 119 (239)
++.+.++|+.|| ++..||..+.+....-....+...... .-+|...++|+ + .++..||..... ..+
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 688999999996 477888877654333222222222222 23677777777 3 347788886221 122
Q ss_pred EEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCE-EEEEEecccCcEEEEEEcc
Q psy11036 120 HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGK-LLHKFTCHHKTVTSLCLAS 198 (239)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~h~~~v~~~~~s~ 198 (239)
..+..-........+ ++...+.||.|+.-.+ ..+..||..+..- .+..+......+.....
T Consensus 460 ~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~--------------~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~-- 521 (571)
T KOG4441|consen 460 APMNTRRSGFGVAVL--NGKIYVVGGFDGTSAL--------------SSVERYDPETNQWTMVAPMTSPRSAVGVVVL-- 521 (571)
T ss_pred CCcccccccceEEEE--CCEEEEECCccCCCcc--------------ceEEEEcCCCCceeEcccCccccccccEEEE--
Confidence 222222222222222 6778888888772110 0133344433222 12222222333322333
Q ss_pred CCCeEEEEcCCc-----eEEEEEccCC
Q psy11036 199 GGKRLISASLDH-----HAKIYEMVNF 220 (239)
Q Consensus 199 ~~~~l~s~s~d~-----~i~iwd~~~~ 220 (239)
+++..+.|+.|| +|..||..+.
T Consensus 522 ~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 522 GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred CCEEEEEecccCccccceeEEcCCCCC
Confidence 577788888876 4777777654
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.31 Score=38.71 Aligned_cols=161 Identities=16% Similarity=0.104 Sum_probs=81.0
Q ss_pred CCeEEEEEecCCCCEEEEee-----------CCC-eEEEEeCCC--CCc--eeee-cCCCCEEEEEEecCCcEEEEeCCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGS-----------YDK-TVNVYDTRS--PDP--VMSV-NHGSPVESVLCLPSGGIFVTGGGL 105 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~-----------~dg-~v~vw~~~~--~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~~ 105 (239)
.....++|.+ +++++++-. ..+ .|.+++-.+ ++. ...+ ........+++.+++ ++ ++...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-ly-V~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VY-VATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EE-EeCCC
Confidence 5567899999 788777642 223 677776543 332 2333 334456889999988 44 44444
Q ss_pred cEEEE-EccCCC----e---EEEEEec----cCCceEEEEEcCCCCEEEEEecCCeEEEEEcccc-eEeeeecceeEEEE
Q psy11036 106 DVCIW-DMLGGG----K---LLHKFTC----HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLK-TVSSFTGGLDVCIW 172 (239)
Q Consensus 106 ~i~~~-d~~~~~----~---~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~i~~~ 172 (239)
.|..+ |....+ + .+..+.. +......++|.|||.+.++-+..+.-.. ..... ........+.+..+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~-~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV-TRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee-ccCCCccCcccccCceEEEE
Confidence 45434 443111 1 1122322 1244678999999987665553221110 00000 00000111234444
Q ss_pred EccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCC
Q psy11036 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD 209 (239)
Q Consensus 173 d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d 209 (239)
+..+. +......++ .....++|+|+|+++++-..+
T Consensus 170 ~pdg~-~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 170 NPDGG-KLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ecCCC-eEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 44332 222122232 335688999999988765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.33 Score=41.93 Aligned_cols=72 Identities=13% Similarity=0.201 Sum_probs=44.8
Q ss_pred CCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEe--------------------ccCCceEEEEEcCC---CCEE
Q psy11036 85 SPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFT--------------------CHHKTVTSLCLASG---GKRL 141 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~--------------------~~~~~i~~i~~~~~---~~~l 141 (239)
-.|..+..+|+|+.++..|...|.|..+....-.-..+. .+...|..+.|+|. +.+|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 468889999999999999987777777642110001111 12335666666664 3566
Q ss_pred EEEecCCeEEEEEcc
Q psy11036 142 ISASLDHHAKIYEMT 156 (239)
Q Consensus 142 ~~~~~d~~i~i~d~~ 156 (239)
++-..|+++++||+.
T Consensus 165 ~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 165 VVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEecCCEEEEEecC
Confidence 666666666666654
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.19 Score=37.87 Aligned_cols=125 Identities=16% Similarity=0.140 Sum_probs=78.0
Q ss_pred CCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEecc-CCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceE
Q psy11036 83 HGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCH-HKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTV 160 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~ 160 (239)
....+.++.|+|+.+.|++..+.--.+-.+...++.+.++.-. -.....|.+..++++.++--.++.+.++.+. ...+
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 4455999999999999998886444444444478888887621 2234567788788888887788999888877 2222
Q ss_pred eeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 161 SSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 161 ~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
... ....-++......+.....++|.|..+.|+.+-+-.=+.||...
T Consensus 164 ~~~-----------~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 164 ISA-----------KVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred Eec-----------cceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 222 00001111111114456677888877777767666666666554
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.35 Score=38.88 Aligned_cols=145 Identities=17% Similarity=0.224 Sum_probs=88.4
Q ss_pred cCCCCEEEEeeCCCeEEEEeCCCCC-----ceeeecCCCCEEEEEEec-----CCcEEEEeCCCcEEEEEccCCC-----
Q psy11036 52 PVSSDIVISGSYDKTVNVYDTRSPD-----PVMSVNHGSPVESVLCLP-----SGGIFVTGGGLDVCIWDMLGGG----- 116 (239)
Q Consensus 52 ~~~~~~l~s~~~dg~v~vw~~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~i~~~d~~~~~----- 116 (239)
+++...+++|+..|.++||+..... .+.....+.+|..+..-+ +...|++-.-..+.+|.+....
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 3356799999999999999986443 122225678888887643 3446666667888888884211
Q ss_pred ---eEEEEEeccCC--ceEEEEEcC----C-CCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec
Q psy11036 117 ---KLLHKFTCHHK--TVTSLCLAS----G-GKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC 186 (239)
Q Consensus 117 ---~~~~~~~~~~~--~i~~i~~~~----~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 186 (239)
-.+..+..|.- ....++.-| . ..++++-+.||.+.+|+-+.-.. ...+..
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f--------------------~~~lp~ 173 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF--------------------SRFLPD 173 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE--------------------EEEcCC
Confidence 12233333432 233344333 2 25788899999999998661111 111111
Q ss_pred ccCcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 187 HHKTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 187 h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
.--..-++|.+.-..+++++.+..+.-|..
T Consensus 174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred -CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 111224577777778888888877777765
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.37 Score=38.88 Aligned_cols=182 Identities=10% Similarity=0.109 Sum_probs=90.8
Q ss_pred CEEEEeeCCCcceeee-eeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC-----------CCeEEEEeCCCC
Q psy11036 8 LIVALWDIPSEAQVST-FTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY-----------DKTVNVYDTRSP 75 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----------dg~v~vw~~~~~ 75 (239)
..+++.|+++++.+.. +.... ...+.|.+ +++.|+.... ...|+.|.+.+.
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~~~----------------~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIENPK----------------FSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP 212 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEEEE----------------SEEEEECT-TSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-
T ss_pred EEEEEEECCCCcCcCCcccccc----------------cceEEEeC-CCCEEEEEEeCcccccccCCCCcEEEEEECCCC
Confidence 5799999999976543 22221 22499999 5555443332 224788888776
Q ss_pred Cce--eeec--CCCC-EEEEEEecCCcEEEEeC----C-CcEEEEEccCC---CeEEEEEeccCCceEEEEEcCCCCEEE
Q psy11036 76 DPV--MSVN--HGSP-VESVLCLPSGGIFVTGG----G-LDVCIWDMLGG---GKLLHKFTCHHKTVTSLCLASGGKRLI 142 (239)
Q Consensus 76 ~~~--~~~~--~~~~-v~~~~~~~~~~~l~~~~----~-~~i~~~d~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~ 142 (239)
... ..+. ...- ...+..++++++++... + ..+.+.++... ......+......+....-+..+.+++
T Consensus 213 ~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi 292 (414)
T PF02897_consen 213 QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYI 292 (414)
T ss_dssp GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEE
T ss_pred hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEE
Confidence 543 3332 2233 67888999999887654 3 45777787632 233444443444443333222333333
Q ss_pred EEec---CCeEEEEEcccceEeeeecceeEEEEEccCCC--EEEEEEecccC--cEEEEEEccCCCeE-EEEcCCc--eE
Q psy11036 143 SASL---DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG--KLLHKFTCHHK--TVTSLCLASGGKRL-ISASLDH--HA 212 (239)
Q Consensus 143 ~~~~---d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~h~~--~v~~~~~s~~~~~l-~s~s~d~--~i 212 (239)
.... .+.|.-.++. ... .....+..+.. .+..+.. .+.+| +....++ .|
T Consensus 293 ~Tn~~a~~~~l~~~~l~-------------------~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 293 LTNDDAPNGRLVAVDLA-------------------DPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRL 351 (414)
T ss_dssp EE-TT-TT-EEEEEETT-------------------STSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEE
T ss_pred eeCCCCCCcEEEEeccc-------------------ccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEE
Confidence 3322 2334333433 211 11223344444 3444443 34444 4444443 58
Q ss_pred EEEEccCCeeeEEec
Q psy11036 213 KIYEMVNFSPVHTLD 227 (239)
Q Consensus 213 ~iwd~~~~~~~~~~~ 227 (239)
+++++..+.....+.
T Consensus 352 ~v~~~~~~~~~~~~~ 366 (414)
T PF02897_consen 352 RVYDLDDGKESREIP 366 (414)
T ss_dssp EEEETT-TEEEEEEE
T ss_pred EEEECCCCcEEeeec
Confidence 888887455555554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.45 Score=39.78 Aligned_cols=222 Identities=12% Similarity=0.087 Sum_probs=115.2
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeec-----------------cceeeccCCCCCeE-EEEEecCCCCEEEEeeC----
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYK-----------------VPLMLYSTPQDYVR-AGTVSPVSSDIVISGSY---- 63 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~---- 63 (239)
.+|.|+.+|.++|+.+..+..-..... .+...+...-..+. .+++.| ...++..+..
T Consensus 179 ~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p 257 (527)
T TIGR03075 179 VRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSP 257 (527)
T ss_pred CCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCC
Confidence 468999999999998876644211000 00000000011121 346666 4445544431
Q ss_pred -CC-----------eEEEEeCCCCCceeeec---CC-------CCEEEEEEecCCc---EEEEeC-CCcEEEEEccCCCe
Q psy11036 64 -DK-----------TVNVYDTRSPDPVMSVN---HG-------SPVESVLCLPSGG---IFVTGG-GLDVCIWDMLGGGK 117 (239)
Q Consensus 64 -dg-----------~v~vw~~~~~~~~~~~~---~~-------~~v~~~~~~~~~~---~l~~~~-~~~i~~~d~~~~~~ 117 (239)
++ .|.-.|+++++....++ |. ....-+....+|+ .++.+. +|.+.+.|-+ +++
T Consensus 258 ~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~-tG~ 336 (527)
T TIGR03075 258 WNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRT-NGK 336 (527)
T ss_pred CCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECC-CCc
Confidence 12 57778899998876653 21 1222223334665 555666 7999999987 666
Q ss_pred EEEEEe--c----------cC-Cce----------------------------EEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 118 LLHKFT--C----------HH-KTV----------------------------TSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 118 ~~~~~~--~----------~~-~~i----------------------------~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
.+...+ . .. .++ ..++++|+..++.....+....++.-.
T Consensus 337 ~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~ 416 (527)
T TIGR03075 337 LLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEK 416 (527)
T ss_pred eeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccc
Confidence 652110 0 00 000 125566666666666555433322110
Q ss_pred c-----ceEee-----e----ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCee
Q psy11036 157 L-----KTVSS-----F----TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 157 ~-----~~~~~-----~----~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
. ..... . ...+.+.-+|+.+. +..-..+......... +.-.+.+++.++.||.++.+|.++|++
T Consensus 417 ~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tG-k~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~ 494 (527)
T TIGR03075 417 VSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITG-KIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEE 494 (527)
T ss_pred cccCCCCceeccccccCCCCCCCceeEEEEeCCCC-ceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCE
Confidence 0 00000 0 11344778888774 3333332211111111 122456777888899999999999999
Q ss_pred eEEecCCCC
Q psy11036 223 VHTLDYPSP 231 (239)
Q Consensus 223 ~~~~~~~~~ 231 (239)
+.+++..+.
T Consensus 495 lw~~~~g~~ 503 (527)
T TIGR03075 495 LWKFKTGSG 503 (527)
T ss_pred eEEEeCCCC
Confidence 998885543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.094 Score=39.25 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=71.2
Q ss_pred CCceeeecCCCCEEEEEEecCCcE-EEEeC-CCc-EEEEEccCCCeEEEEEeccCCc--eEEEEEcCCCCEEEEEecC--
Q psy11036 75 PDPVMSVNHGSPVESVLCLPSGGI-FVTGG-GLD-VCIWDMLGGGKLLHKFTCHHKT--VTSLCLASGGKRLISASLD-- 147 (239)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-~~~-i~~~d~~~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d-- 147 (239)
++.+...........|+++|.... ++.+- -|+ ..++|.. ..+....+...++. --.=.|+|||++|...-.|
T Consensus 58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~-~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd 136 (366)
T COG3490 58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPN-GAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD 136 (366)
T ss_pred CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCC-CCcCcEEEecccCceeecccccCCCCcEEEeecCCCC
Confidence 445555555566667888886544 33343 244 5688887 44444444332221 1123589999998876544
Q ss_pred ---CeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC
Q psy11036 148 ---HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL 208 (239)
Q Consensus 148 ---~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 208 (239)
|.|-|||.+ ...+.+.++..|.-.-..+.+.+||+.|+.+..
T Consensus 137 ~~rGViGvYd~r-------------------~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 137 PNRGVIGVYDAR-------------------EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred CCCceEEEEecc-------------------cccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 445555544 445666667778777888999999999887643
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.39 Score=40.60 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=71.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee--ecCCCCEEEEEEe--cCCcEEEEeC-CCcEEEEEcc----
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS--VNHGSPVESVLCL--PSGGIFVTGG-GLDVCIWDML---- 113 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~--~~~~~~v~~~~~~--~~~~~l~~~~-~~~i~~~d~~---- 113 (239)
....-+.-+. -+...++-+...++.|||.+.+..... +...+.|.++.|. |+++.+++.+ .+.|.+|--.
T Consensus 30 ~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 4444555554 344555555556899999988764433 3458899999986 5777777666 8888887431
Q ss_pred -C---CCeEEEEE--eccC-CceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 114 -G---GGKLLHKF--TCHH-KTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 114 -~---~~~~~~~~--~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
. ...+++++ ..|+ .+|.+..|.++|..++.+ ++.+.|+|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 1 11233332 3344 589999999998766554 5678887654
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.48 Score=39.71 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=33.1
Q ss_pred CCCEEEEeeCC-----CeEEEEeCCCCCceeee--cCCCCEEEEEEecCCcEEEEeC-C------CcEEEEEcc
Q psy11036 54 SSDIVISGSYD-----KTVNVYDTRSPDPVMSV--NHGSPVESVLCLPSGGIFVTGG-G------LDVCIWDML 113 (239)
Q Consensus 54 ~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~------~~i~~~d~~ 113 (239)
++.+++.||.+ ..+..||..+++....- .....-.+++ .-++...+.|+ + ..+..||+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCC
Confidence 56777888765 35778888776543221 1111111222 23566777666 1 347788886
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.027 Score=28.98 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=27.1
Q ss_pred CCeEEEEEecCCC--CEEEEeeCCCeEEEEeCCCC
Q psy11036 43 DYVRAGTVSPVSS--DIVISGSYDKTVNVYDTRSP 75 (239)
Q Consensus 43 ~~v~~~~~~~~~~--~~l~s~~~dg~v~vw~~~~~ 75 (239)
+.|.+++|+|..+ ++|+.+-.-|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3589999998555 68888888899999999853
|
It contains a characteristic DLL sequence motif. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.032 Score=28.54 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=32.1
Q ss_pred cCCCeEEEE-cCCceEEEEEccCCeeeEEecCCCCeeeeEec
Q psy11036 198 SGGKRLISA-SLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVS 238 (239)
Q Consensus 198 ~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s 238 (239)
|++++|+++ -.++.|.++|..+++.+.++........++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 567766554 46889999999999999999876667777764
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.055 Score=39.46 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=44.9
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCceeee---------------cCCCCEEEEEEecCCcEEEEeCCCcEEEEEcc
Q psy11036 54 SSDIVISGSYDKTVNVYDTRSPDPVMSV---------------NHGSPVESVLCLPSGGIFVTGGGLDVCIWDML 113 (239)
Q Consensus 54 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~ 113 (239)
.+++|++-+.+|.+++||+.+++.+..- .....|..+..+.+|.-+++-++|..+.|+..
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 5778999999999999999988654322 13356777777777877777777777777764
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.43 Score=38.21 Aligned_cols=137 Identities=14% Similarity=0.181 Sum_probs=69.1
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee--------------------CCCeE
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS--------------------YDKTV 67 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--------------------~dg~v 67 (239)
|.+.++|-++.+......... .....-...-|.| ..+.++|.. ...++
T Consensus 157 Ggf~llD~~tf~v~g~We~~~-----------~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l 224 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDR-----------GPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSL 224 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB------------TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EE
T ss_pred CcEEEEcCccccccceeccCC-----------CCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeE
Confidence 567777777776666554432 0013456778888 677888742 23589
Q ss_pred EEEeCCCCCceeeecCC---CCEEEEEEec--CCcEEEEeC--CCcEEEEEccCCCe----EEEEEecc-----------
Q psy11036 68 NVYDTRSPDPVMSVNHG---SPVESVLCLP--SGGIFVTGG--GLDVCIWDMLGGGK----LLHKFTCH----------- 125 (239)
Q Consensus 68 ~vw~~~~~~~~~~~~~~---~~v~~~~~~~--~~~~l~~~~--~~~i~~~d~~~~~~----~~~~~~~~----------- 125 (239)
.+||+.+.+.++++... .....+.|.. +..+-+++. ..+|..|--...++ .+..+...
T Consensus 225 ~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml 304 (461)
T PF05694_consen 225 HVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEML 304 (461)
T ss_dssp EEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGG
T ss_pred EEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccc
Confidence 99999999999888433 3456777764 445555554 55555543321332 22222111
Q ss_pred ------CCceEEEEEcCCCCEEEEEe-cCCeEEEEEcc
Q psy11036 126 ------HKTVTSLCLASGGKRLISAS-LDHHAKIYEMT 156 (239)
Q Consensus 126 ------~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~ 156 (239)
..-|+.|..|.|.++|.... .+|.|+.||+.
T Consensus 305 ~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 305 KPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp GGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred cccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 24579999999999887665 58999999987
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.037 Score=48.73 Aligned_cols=144 Identities=13% Similarity=0.033 Sum_probs=87.0
Q ss_pred CCeEEEEEecCCCCEEE--EeeCCCeEEEEeCCCCCcee----e-e-------cCCCCEEEEEEecCCcEEEEe--CCCc
Q psy11036 43 DYVRAGTVSPVSSDIVI--SGSYDKTVNVYDTRSPDPVM----S-V-------NHGSPVESVLCLPSGGIFVTG--GGLD 106 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~--s~~~dg~v~vw~~~~~~~~~----~-~-------~~~~~v~~~~~~~~~~~l~~~--~~~~ 106 (239)
-++..+...+ +....+ ..+.+-.|..||+++-..-. . + ....-..++.|.|.-....+. .|+.
T Consensus 101 ~pi~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 4555666666 444333 33344578899987542211 0 1 233455678898864443333 3788
Q ss_pred EEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec
Q psy11036 107 VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC 186 (239)
Q Consensus 107 i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 186 (239)
|.+..+....+....+. .....++++|+|.|+.++.|-..|++.-|....+....+. ..+..
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip-------------~Pp~~---- 241 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIP-------------EPPVE---- 241 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeeccc-------------CCCcC----
Confidence 88887764444444433 4567899999999999999999999988876633322220 11110
Q ss_pred ccCcEEEEEEccCCCeEEE
Q psy11036 187 HHKTVTSLCLASGGKRLIS 205 (239)
Q Consensus 187 h~~~v~~~~~s~~~~~l~s 205 (239)
....|.+++|-....++++
T Consensus 242 e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 242 ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred CCcceeEEEEecceeEEEE
Confidence 1356778888766666554
|
|
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.081 Score=42.21 Aligned_cols=121 Identities=11% Similarity=0.125 Sum_probs=84.4
Q ss_pred cceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee--c---CCCCEEEEEEecCCcEEEEeCCCcE
Q psy11036 33 VPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--N---HGSPVESVLCLPSGGIFVTGGGLDV 107 (239)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--~---~~~~v~~~~~~~~~~~l~~~~~~~i 107 (239)
+|+..-..++++|.++.|++ +++.|+.--.+.+|.+.+....+..... . ....|....|..+ .-++...+..+
T Consensus 57 VpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~ 134 (657)
T KOG2377|consen 57 VPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGI 134 (657)
T ss_pred CCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCe
Confidence 45544455668999999999 8999999999999999998544433332 1 2345888899876 55666666667
Q ss_pred EEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEe--cCCeEEEEEc
Q psy11036 108 CIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS--LDHHAKIYEM 155 (239)
Q Consensus 108 ~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~d~~i~i~d~ 155 (239)
.+|-.......++..+.|+..|.-..|.++-+.++.++ ..+++.=+.+
T Consensus 135 e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~ 184 (657)
T KOG2377|consen 135 EFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHF 184 (657)
T ss_pred EEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEE
Confidence 77776645666777788888999999999876544333 3444433333
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.52 Score=37.45 Aligned_cols=108 Identities=23% Similarity=0.267 Sum_probs=56.4
Q ss_pred CCEEEEEEecCCcEEEEeC------------CC-cEEEEEcc-CCCe--EEEEEeccCCceEEEEEcCCCCEEEEEecCC
Q psy11036 85 SPVESVLCLPSGGIFVTGG------------GL-DVCIWDML-GGGK--LLHKFTCHHKTVTSLCLASGGKRLISASLDH 148 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~------------~~-~i~~~d~~-~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 148 (239)
.....|+|.++|+++++-. .+ .|.+++-. ..++ ....+.........+++.++| .++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4567888999998887742 22 56666543 1222 233443334456889998888 444 44443
Q ss_pred eEEEEEcccceEeeeecceeEEEEEccCCCE-EEEEEec----ccCcEEEEEEccCCCeEEEEc
Q psy11036 149 HAKIYEMTLKTVSSFTGGLDVCIWDMLGGGK-LLHKFTC----HHKTVTSLCLASGGKRLISAS 207 (239)
Q Consensus 149 ~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~----h~~~v~~~~~s~~~~~l~s~s 207 (239)
..++.|..+..... + ..+ .+..+.. +......++|.|||.+.++-+
T Consensus 92 i~~~~d~~gdg~ad--~-----------~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKAD--G-----------EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCC--C-----------ccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 33333443110000 0 011 1111211 234577889999998776554
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.66 Score=37.44 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=63.8
Q ss_pred eEEEEEecCCCCEEEEe-eCCC----eEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-C---C------c--
Q psy11036 45 VRAGTVSPVSSDIVISG-SYDK----TVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-G---L------D-- 106 (239)
Q Consensus 45 v~~~~~~~~~~~~l~s~-~~dg----~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~---~------~-- 106 (239)
+....++| ++++++.+ +..| .++++|+++++.+... ... ....+.|.++++.++... + . .
T Consensus 126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 33578889 67766643 3334 6999999999765432 211 122399999988776554 2 1 2
Q ss_pred EEEEEccCCCeE-EEEEeccCCc--eEEEEEcCCCCEEEEEecC----CeEEEEEcc
Q psy11036 107 VCIWDMLGGGKL-LHKFTCHHKT--VTSLCLASGGKRLISASLD----HHAKIYEMT 156 (239)
Q Consensus 107 i~~~d~~~~~~~-~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d----~~i~i~d~~ 156 (239)
|..|.+...... ...+...... ...+..++++++++..... ..+.+.++.
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 666776532221 2333333332 5678889999987764433 235555554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.87 Score=38.43 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCCEEEEeeCC------CeEEEEeCCCCCceee--ecCCCCEEEEEEecCCcEEEEeC-C-----CcEEEEEccCCCeEE
Q psy11036 54 SSDIVISGSYD------KTVNVYDTRSPDPVMS--VNHGSPVESVLCLPSGGIFVTGG-G-----LDVCIWDMLGGGKLL 119 (239)
Q Consensus 54 ~~~~l~s~~~d------g~v~vw~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~-----~~i~~~d~~~~~~~~ 119 (239)
++.+++.||.+ ..+..||..+.+.... +.....-.+++ .-+++..+.|+ + ..+..||.. ..+ -
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~-~~~-W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMG-DDK-W 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECC-CCe-E
Confidence 56778888754 3477888877653221 11111111222 23577777777 3 247889986 322 2
Q ss_pred EEEec---cCCceEEEEEcCCCCEEEEEecCC
Q psy11036 120 HKFTC---HHKTVTSLCLASGGKRLISASLDH 148 (239)
Q Consensus 120 ~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~ 148 (239)
..+.. .......+.+ +|+..+.||.++
T Consensus 380 ~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~ 409 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVL--DQYIYIIGGRTE 409 (557)
T ss_pred EECCCCCcccccccEEEE--CCEEEEEeCCCc
Confidence 22211 1111112222 577777777654
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.49 Score=35.33 Aligned_cols=175 Identities=15% Similarity=0.056 Sum_probs=103.5
Q ss_pred CCeEEEEEecCCCCEEEEeeCCC--eEEEEeCCCCCceeeecCCCC--EEEEEEecCCcEEEEeCCCcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDK--TVNVYDTRSPDPVMSVNHGSP--VESVLCLPSGGIFVTGGGLDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg--~v~vw~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~ 118 (239)
.-...+.|.. ++.++-+.+.-| .|+.+|+.+++.......+.. -..++...+.-+.++=-++...+||.. +.+.
T Consensus 45 aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~-tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPN-TLKK 122 (264)
T ss_dssp -EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETT-TTEE
T ss_pred ccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccc-cceE
Confidence 3456788866 677888777766 799999999987766543332 344555544333344448999999998 7888
Q ss_pred EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEc
Q psy11036 119 LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 197 (239)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s 197 (239)
+.++.- .+.=..++ .+++.|+.......++.+|.. .+....+ .+.+ .+.++. .+.-|.+-
T Consensus 123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i------~V~~---~g~pv~-------~LNELE~i 183 (264)
T PF05096_consen 123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI------QVTD---NGRPVS-------NLNELEYI 183 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE------E-EE---TTEE----------EEEEEEE
T ss_pred EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEE------EEEE---CCEECC-------CcEeEEEE
Confidence 888764 34556666 467778877777888888876 3333322 2222 222222 23334443
Q ss_pred cCCCeEEEEcCCceEEEEEccCCeeeEEec----------------CCCCeeeeEecC
Q psy11036 198 SGGKRLISASLDHHAKIYEMVNFSPVHTLD----------------YPSPVLSIDVSM 239 (239)
Q Consensus 198 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----------------~~~~v~~~~~sp 239 (239)
+|...|-.=....|...|..+|+.+..+. ...-.+.+||.|
T Consensus 184 -~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~ 240 (264)
T PF05096_consen 184 -NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDP 240 (264)
T ss_dssp -TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEET
T ss_pred -cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeC
Confidence 55555555555667777888887776653 123577888765
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.95 Score=38.30 Aligned_cols=101 Identities=20% Similarity=0.245 Sum_probs=54.2
Q ss_pred eEEEEEecCCCCEEEEeeCC------CeEEEEeCCCCCceeeecCCC-CE-EEEEEecCCcEEEEeC-CC-----cEEEE
Q psy11036 45 VRAGTVSPVSSDIVISGSYD------KTVNVYDTRSPDPVMSVNHGS-PV-ESVLCLPSGGIFVTGG-GL-----DVCIW 110 (239)
Q Consensus 45 v~~~~~~~~~~~~l~s~~~d------g~v~vw~~~~~~~~~~~~~~~-~v-~~~~~~~~~~~l~~~~-~~-----~i~~~ 110 (239)
-.+++.. ++.+.++|+.| .++..||..+.+....-.... +. .+++ .-+|...++|+ +| ++..|
T Consensus 325 ~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 325 RVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred cccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE-EECCEEEEEeccccccccccEEEe
Confidence 4455555 46888999998 367788888777433222111 11 1122 22577777777 43 47788
Q ss_pred EccCCC-eEEEEEeccCCceEEEEEcCCCCEEEEEecCCeE
Q psy11036 111 DMLGGG-KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 150 (239)
Q Consensus 111 d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 150 (239)
|.+... ..+..+.......-...+ +|...++||.++.-
T Consensus 402 Dp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 402 DPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSS 440 (571)
T ss_pred cCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCc
Confidence 886221 111112211112222222 67888888877643
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.073 Score=27.42 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=25.9
Q ss_pred CcEEEEEEccCC---CeEEEEcCCceEEEEEccC
Q psy11036 189 KTVTSLCLASGG---KRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 189 ~~v~~~~~s~~~---~~l~s~s~d~~i~iwd~~~ 219 (239)
++|.++.|||+. .+|+-+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999844 5888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.93 Score=37.97 Aligned_cols=205 Identities=15% Similarity=0.129 Sum_probs=102.9
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGS 85 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 85 (239)
.++.|+-.|..+|+.+..+.........+..+.. ..-..+++. +..++.++.|+.|.-+|.++++.+.......
T Consensus 77 ~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~---~~~rg~av~---~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~ 150 (527)
T TIGR03075 77 SYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCD---VVNRGVALY---DGKVFFGTLDARLVALDAKTGKVVWSKKNGD 150 (527)
T ss_pred CCCcEEEEECCCCceeeEecCCCCcccccccccc---cccccceEE---CCEEEEEcCCCEEEEEECCCCCEEeeccccc
Confidence 3467888888899888776543200000000000 000112332 3456677889999999999999877653211
Q ss_pred --CEEEEEEec---CCcEEEEeC------CCcEEEEEccCCCeEEEEEeccCCc--------------------------
Q psy11036 86 --PVESVLCLP---SGGIFVTGG------GLDVCIWDMLGGGKLLHKFTCHHKT-------------------------- 128 (239)
Q Consensus 86 --~v~~~~~~~---~~~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~-------------------------- 128 (239)
.-..+.-+| ++..++... +|.|.-+|.+ +++.+-.+..-...
T Consensus 151 ~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~-TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~ 229 (527)
T TIGR03075 151 YKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAK-TGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWK 229 (527)
T ss_pred ccccccccCCcEEECCEEEEeecccccCCCcEEEEEECC-CCceeEeccCcCCCcccccccccccccccccCCCCCCccc
Confidence 001111122 444444322 4778888988 66655443321110
Q ss_pred -----e-EEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecc----eeEEEEEccCCCEEEEEEecccCcE-------
Q psy11036 129 -----V-TSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGG----LDVCIWDMLGGGKLLHKFTCHHKTV------- 191 (239)
Q Consensus 129 -----i-~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~h~~~v------- 191 (239)
+ ..+++.|+..++..+.....- |+-..+ .|+ ..+.-.|+++ ++..-.++...+.+
T Consensus 230 ~gg~~~W~~~s~D~~~~lvy~~tGnp~p--~~~~~r-----~gdnl~~~s~vAld~~T-G~~~W~~Q~~~~D~wD~d~~~ 301 (527)
T TIGR03075 230 TGGGATWGTGSYDPETNLIYFGTGNPSP--WNSHLR-----PGDNLYTSSIVARDPDT-GKIKWHYQTTPHDEWDYDGVN 301 (527)
T ss_pred cCCCCccCceeEcCCCCeEEEeCCCCCC--CCCCCC-----CCCCccceeEEEEcccc-CCEEEeeeCCCCCCccccCCC
Confidence 0 112344444444444332211 211100 111 1355566665 44443333322111
Q ss_pred --EEEEEccCCC---eEEEEcCCceEEEEEccCCeeeEE
Q psy11036 192 --TSLCLASGGK---RLISASLDHHAKIYEMVNFSPVHT 225 (239)
Q Consensus 192 --~~~~~s~~~~---~l~s~s~d~~i~iwd~~~~~~~~~ 225 (239)
.-+.+..+|+ .++.+..+|.+++.|..+|+++..
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~ 340 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSA 340 (527)
T ss_pred CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceecc
Confidence 1122224665 788999999999999999998743
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.76 Score=36.02 Aligned_cols=148 Identities=14% Similarity=0.043 Sum_probs=82.1
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee--cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~ 120 (239)
..+.++.+.| ++.++++ +..|.+..-.-..++....+ .....++++.+.++++.++++..|.+.+=..+ .+....
T Consensus 173 g~~~~i~~~~-~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~sW~ 249 (334)
T PRK13684 173 GVVRNLRRSP-DGKYVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DLESWS 249 (334)
T ss_pred ceEEEEEECC-CCeEEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCC-CCCccc
Confidence 5688889888 5655554 44565543211222222222 34567899999999998888777766532222 333332
Q ss_pred EEecc----CCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEE---ecccCcEEE
Q psy11036 121 KFTCH----HKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKF---TCHHKTVTS 193 (239)
Q Consensus 121 ~~~~~----~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~h~~~v~~ 193 (239)
..... ...+..+.+.+++..++ ++.+|.+.. ..+ .++.-... ..-......
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d--------------------~G~tW~~~~~~~~~~~~~~~ 307 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKD--------------------GGKTWEKDPVGEEVPSNFYK 307 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCC--------------------CCCCCeECCcCCCCCcceEE
Confidence 22211 23578889988776555 446675542 222 11111111 111234677
Q ss_pred EEEccCCCeEEEEcCCceEEEEE
Q psy11036 194 LCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 194 ~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
+.|..+++.++ .+..|.|.-|+
T Consensus 308 ~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 308 IVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEeCCCceEE-ECCCceEEEec
Confidence 77776666655 44678887765
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.4 Score=38.93 Aligned_cols=178 Identities=10% Similarity=0.079 Sum_probs=107.1
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC----------CCeEEEEeCCCCCc
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY----------DKTVNVYDTRSPDP 77 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----------dg~v~vw~~~~~~~ 77 (239)
..++++|-++.+.+...+-...- ....|.++.|..+.+.++++|.. .|.|.++.+...+.
T Consensus 750 s~l~vlD~nTf~vl~~hef~~~E----------~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 750 SFLRVLDQNTFEVLSSHEFERNE----------TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred EEEEEecCCceeEEeeccccccc----------eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 45777777766655433322210 00345556688744667777642 47788888776433
Q ss_pred eeee---cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEE
Q psy11036 78 VMSV---NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 154 (239)
Q Consensus 78 ~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d 154 (239)
+... ...+.+.++..- +|+ +++|-...|++|+.. ..+.++.-..+..++..+...-.|..+++|..=+.+.+..
T Consensus 820 L~~v~e~~v~Gav~aL~~f-ngk-llA~In~~vrLye~t-~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALVEF-NGK-LLAGINQSVRLYEWT-TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred eeeeeeeeeccceeehhhh-CCe-EEEecCcEEEEEEcc-ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence 3333 345666665443 344 444557789999997 5556666667888999999988999999998888887766
Q ss_pred cccceEeeeecceeEEEEEccCCCEEEE-EEecccCcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 155 MTLKTVSSFTGGLDVCIWDMLGGGKLLH-KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
.+.. .+.... .-..+..+.+++.+-. +..++.+-.+|.+.+-..
T Consensus 897 y~~~------------------eg~f~evArD~~p~Wmtaveil~-~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 897 YKGD------------------EGNFEEVARDYNPNWMTAVEILD-DDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred Eecc------------------CCceEEeehhhCccceeeEEEec-CceEEeecccccEEEEEe
Confidence 6511 111111 1123455666666643 344455556676666544
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.9 Score=36.46 Aligned_cols=142 Identities=12% Similarity=0.057 Sum_probs=79.8
Q ss_pred eEEEEEecCCCCEEEEeeCCCeEE-EEeCCCCCc---eeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCe---
Q psy11036 45 VRAGTVSPVSSDIVISGSYDKTVN-VYDTRSPDP---VMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGK--- 117 (239)
Q Consensus 45 v~~~~~~~~~~~~l~s~~~dg~v~-vw~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~--- 117 (239)
...+..++ ++.+++.+.. |.+. -|| .++. .........++++.+.+++..++++..|.+..-+- .++
T Consensus 241 f~~v~~~~-dG~~~~vg~~-G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d--~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSR-GNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKG--TGLTEE 314 (398)
T ss_pred eeeEEEcC-CCCEEEEECC-ccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecC--CCCccc
Confidence 33445556 5656655544 4332 233 2322 12234566789999999999999888877654332 332
Q ss_pred --EEEEEec--cCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEE---ecccCc
Q psy11036 118 --LLHKFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKF---TCHHKT 190 (239)
Q Consensus 118 --~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~h~~~ 190 (239)
....... ....+..+.+.+++..+++ +..|.+....-. ++.-... ..-...
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~D~---------------------G~tW~~~~~~~~~~~~ 372 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRSTDG---------------------GKSWKRDKGADNIAAN 372 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeCCC---------------------CcceeEccccCCCCcc
Confidence 2232221 1235888999877665554 567766554322 1211111 122345
Q ss_pred EEEEEEccCCCeEEEEcCCceEEEE
Q psy11036 191 VTSLCLASGGKRLISASLDHHAKIY 215 (239)
Q Consensus 191 v~~~~~s~~~~~l~s~s~d~~i~iw 215 (239)
...+.|.++++.+++| .+|.|.-|
T Consensus 373 ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 373 LYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred eeEEEEcCCCceEEEe-CCcEEEEe
Confidence 7788888777766655 57777654
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.8 Score=35.83 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=35.1
Q ss_pred CEEEEEEecCCcEEEEeCCCcEEEEEccCCC-eEEEEEe----ccCCceEEEEEcCC
Q psy11036 86 PVESVLCLPSGGIFVTGGGLDVCIWDMLGGG-KLLHKFT----CHHKTVTSLCLASG 137 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~-~~~~~~~----~~~~~i~~i~~~~~ 137 (239)
..+.|+|.|+++++++-..|.|.+++..... ..+..+. ........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 4578999999999887778999999943111 2233331 23457899999994
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.26 Score=39.46 Aligned_cols=135 Identities=8% Similarity=0.096 Sum_probs=78.8
Q ss_pred EEEEEecCCCCEEEEeeCCCeEEEEeCCCCC--ceeee--cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCC---Ce
Q psy11036 46 RAGTVSPVSSDIVISGSYDKTVNVYDTRSPD--PVMSV--NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGG---GK 117 (239)
Q Consensus 46 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~---~~ 117 (239)
+.+-|.. .+..+.+-..|.+.=|-+.... ....+ ..+++|.++.|++|.+.+++-- +.+|.+++.... .+
T Consensus 26 ngvFfDD--aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 26 NGVFFDD--ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred cceeecc--CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 3454543 3333333344556666654332 22223 4678999999999999999887 799999987411 11
Q ss_pred EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEc
Q psy11036 118 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 197 (239)
Q Consensus 118 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s 197 (239)
..++.+..+..|..+.|... .-+|.....| +.+|... .....++..+.|...|.--.|+
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~-------------------pekrslRlVks~~~nvnWy~yc 162 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL-------------------PEKRSLRLVKSHNLNVNWYMYC 162 (657)
T ss_pred HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc-------------------hhhhhhhhhhhcccCccEEEEc
Confidence 22333444567899999865 5566655444 4444433 1122333345566666666677
Q ss_pred cCCCeE
Q psy11036 198 SGGKRL 203 (239)
Q Consensus 198 ~~~~~l 203 (239)
++-+.+
T Consensus 163 ~et~v~ 168 (657)
T KOG2377|consen 163 PETAVI 168 (657)
T ss_pred cccceE
Confidence 765543
|
|
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.21 Score=44.94 Aligned_cols=134 Identities=12% Similarity=0.276 Sum_probs=85.5
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEe--------cCCCCEEEEeeCCCeEEEEeCCCCC-
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVS--------PVSSDIVISGSYDKTVNVYDTRSPD- 76 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~l~s~~~dg~v~vw~~~~~~- 76 (239)
.|+.+.+|+.+++.....+.+-. ..|..+..- |.=.++|+.+. --.|.++-+.-.+
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~s--------------htIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~ 161 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLS--------------HTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEF 161 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchh--------------hhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccc
Confidence 47899999999988777787755 445555433 21123344433 3456665443211
Q ss_pred ---ce-----eeec-CCCCEEEEEEecCCcEEEEeCCCcEEEEEcc----CC--Ce-----------------EEEEEe-
Q psy11036 77 ---PV-----MSVN-HGSPVESVLCLPSGGIFVTGGGLDVCIWDML----GG--GK-----------------LLHKFT- 123 (239)
Q Consensus 77 ---~~-----~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~----~~--~~-----------------~~~~~~- 123 (239)
.. .++. .+..|.|+....+|+.+++|.||. +|.+- .. ++ .+-.+.
T Consensus 162 ~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 162 TGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred cCcccccccceeeecCCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence 10 1122 356789999888999999999884 44331 10 00 011122
Q ss_pred ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 124 CHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 124 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
.+..+|..++....-..+.+-++.++|.+||+.
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEcc
Confidence 456799999998777888999999999999997
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.47 Score=38.70 Aligned_cols=132 Identities=14% Similarity=0.180 Sum_probs=82.2
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCC------CCEEEEeeCCCeEEEEeCCC-CCce
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVS------SDIVISGSYDKTVNVYDTRS-PDPV 78 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~dg~v~vw~~~~-~~~~ 78 (239)
....++-.|++.|+.+.+...|. .+ -+.|.|.. ...-+.|-.+..|.-.|.+- +..+
T Consensus 488 ~~~kLykmDIErGkvveeW~~~d---------------dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 488 ERDKLYKMDIERGKVVEEWDLKD---------------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred CcccceeeecccceeeeEeecCC---------------cc-eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence 33556666788888888888885 34 66777731 12233455555555556542 3222
Q ss_pred eeecC-----CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy11036 79 MSVNH-----GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 152 (239)
Q Consensus 79 ~~~~~-----~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 152 (239)
..... .....+..-. ...++++++ .|.|++||-- .......+++....|..+....+|+++++.+ ...+.+
T Consensus 552 ~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL 628 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLL 628 (776)
T ss_pred eeeeehhccccccccccccc-cCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEee-cceEEE
Confidence 22222 2223333333 344777777 6999999975 4445555677778999999999999877665 456778
Q ss_pred EEcc
Q psy11036 153 YEMT 156 (239)
Q Consensus 153 ~d~~ 156 (239)
-|++
T Consensus 629 ~d~~ 632 (776)
T COG5167 629 TDVP 632 (776)
T ss_pred Eecc
Confidence 8876
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.77 Score=34.39 Aligned_cols=134 Identities=15% Similarity=0.112 Sum_probs=77.9
Q ss_pred CEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEc-ccceEee
Q psy11036 86 PVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM-TLKTVSS 162 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~ 162 (239)
.+...+++++++.++... ++.-.+|-....+.....+. ...+...+|++++...+....+...+++.. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~----- 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS----- 97 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCC-----
Confidence 688999999999887665 54444444442333333233 237788899999877766666666555531 10
Q ss_pred eecceeEEEEEccCCCEEEEE-EecccCcEEEEEEccCCCeEEEEc---CCceEEEEEcc---CC------eeeEEec-C
Q psy11036 163 FTGGLDVCIWDMLGGGKLLHK-FTCHHKTVTSLCLASGGKRLISAS---LDHHAKIYEMV---NF------SPVHTLD-Y 228 (239)
Q Consensus 163 ~~~~~~i~~~d~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~s---~d~~i~iwd~~---~~------~~~~~~~-~ 228 (239)
........ ...-...|..+.+||||..++... .++.|.+=-+. .+ .++.... .
T Consensus 98 -------------g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 98 -------------GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred -------------CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 00111111 111112799999999999877554 35777776543 23 1111111 2
Q ss_pred CCCeeeeEecC
Q psy11036 229 PSPVLSIDVSM 239 (239)
Q Consensus 229 ~~~v~~~~~sp 239 (239)
...+.+++|.+
T Consensus 165 ~~~v~~v~W~~ 175 (253)
T PF10647_consen 165 LSDVTDVAWSD 175 (253)
T ss_pred cCcceeeeecC
Confidence 45788888864
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=95.29 E-value=1 Score=37.01 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=54.3
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecc-ee--EEEEEccCCCEEEEEEecccCcEEEEEEccCC---
Q psy11036 128 TVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGG-LD--VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG--- 200 (239)
Q Consensus 128 ~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~-~~--i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~--- 200 (239)
.|..+..++.|..++..|.+|.+.++=.+ ...-..+..+ .. .+...+ +..+..-. ..-.+..++|+|+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i---~~~~ftss-~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPV---AERFFTSS-TSLTLKQAAWHPSSILD 180 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecc---cceeeccC-CceeeeeccccCCccCC
Confidence 56778889999999999999976655433 1111111111 11 111211 11111111 22346778999975
Q ss_pred CeEEEEcCCceEEEEEccCCeee
Q psy11036 201 KRLISASLDHHAKIYEMVNFSPV 223 (239)
Q Consensus 201 ~~l~s~s~d~~i~iwd~~~~~~~ 223 (239)
..|..-+.|..+|+||+.....+
T Consensus 181 ~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchh
Confidence 56777788999999999765544
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.73 Score=33.21 Aligned_cols=150 Identities=11% Similarity=0.101 Sum_probs=84.8
Q ss_pred CEEEEeeCCCeEEEEeCCC--CCceeeecCCCCEEEEEEecCCcEEEEeC----CC---cEEEE---Ecc-CCCeEEE-E
Q psy11036 56 DIVISGSYDKTVNVYDTRS--PDPVMSVNHGSPVESVLCLPSGGIFVTGG----GL---DVCIW---DML-GGGKLLH-K 121 (239)
Q Consensus 56 ~~l~s~~~dg~v~vw~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~---~i~~~---d~~-~~~~~~~-~ 121 (239)
+.|+.+.....|.+|++.+ .+...++..-+.|..+.++..|.++++-- .. .+++| +.. ....++. +
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 5554446667899999983 34555667779999999999999999986 13 45664 221 0111111 1
Q ss_pred Eec---------------------cCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEE
Q psy11036 122 FTC---------------------HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKL 180 (239)
Q Consensus 122 ~~~---------------------~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~ 180 (239)
+-+ -+.++.+++-.|-..-|+.|+ ++.+.+|.+..+... ...+.+.|....
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~----~~~~~~lDFe~~--- 180 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQ----SEKFSFLDFERS--- 180 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEe----cccccEEechhh---
Confidence 112 234667788888444455553 667889988722211 111223332210
Q ss_pred EEEEeccc-CcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 181 LHKFTCHH-KTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 181 ~~~~~~h~-~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
.+.-|. -....+++. +.++|..+ +-.++++.+.
T Consensus 181 --l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 181 --LIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred --hhheecCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 001111 224566665 66888776 4567776653
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.5 Score=39.16 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=70.6
Q ss_pred CCeEEEEEecCC---CCEEEEeeCCCeEEEEeCCC-----CCceee----ec--CCCCEEEEEEecCCcEEEEeCCCcE-
Q psy11036 43 DYVRAGTVSPVS---SDIVISGSYDKTVNVYDTRS-----PDPVMS----VN--HGSPVESVLCLPSGGIFVTGGGLDV- 107 (239)
Q Consensus 43 ~~v~~~~~~~~~---~~~l~s~~~dg~v~vw~~~~-----~~~~~~----~~--~~~~v~~~~~~~~~~~l~~~~~~~i- 107 (239)
+.|..+.|.|-. ...|++.-....|.||.+.. .+.... +. .+--...+.|+|....|++-....+
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 568999999841 22344445668899999852 222111 11 1122367889999998888774444
Q ss_pred EEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEE-ecCCeEEEEEcc
Q psy11036 108 CIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA-SLDHHAKIYEMT 156 (239)
Q Consensus 108 ~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~ 156 (239)
.+++++.....++.=-...+.|.|.+|.+||+.|+++ +..=.-++||-.
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 3455553443333222457889999999999876654 344456688754
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.48 Score=40.58 Aligned_cols=113 Identities=8% Similarity=0.146 Sum_probs=73.3
Q ss_pred CeEEEEEecC-CCCEEEEeeCCCeEEEEeCCC-------C-------------CceeeecCCCCEEEEEEe--cCCcEEE
Q psy11036 44 YVRAGTVSPV-SSDIVISGSYDKTVNVYDTRS-------P-------------DPVMSVNHGSPVESVLCL--PSGGIFV 100 (239)
Q Consensus 44 ~v~~~~~~~~-~~~~l~s~~~dg~v~vw~~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~l~ 100 (239)
.|.-+....- +.+.|+.+..||.|.+|.+++ . ++...+..+..+..++++ ...+++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 3555544332 456888999999999996521 0 112223456788999998 7788888
Q ss_pred EeCC-CcEEEEEccCC--CeEEEEEeccCCceEEEEEcCCC---C---EEEEEecCCeEEEEEcc
Q psy11036 101 TGGG-LDVCIWDMLGG--GKLLHKFTCHHKTVTSLCLASGG---K---RLISASLDHHAKIYEMT 156 (239)
Q Consensus 101 ~~~~-~~i~~~d~~~~--~~~~~~~~~~~~~i~~i~~~~~~---~---~l~~~~~d~~i~i~d~~ 156 (239)
++++ ..|.||-.... ......-..+...|.+|+|-++. . .+++++-.|.+.+|++.
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 8884 66777644321 11111111256678899997643 2 78889999999999884
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.8 Score=32.88 Aligned_cols=172 Identities=9% Similarity=-0.003 Sum_probs=85.8
Q ss_pred CEEEEeeCCCcceeeeeeCCc-eeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHT-TIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSP 86 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~ 86 (239)
..|++||+.+++.+..-+-.. ..++ ..++.+ +..+..-.-.+|.-..+|.++.+++..+..++.
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~~~Fg----------EGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge 132 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPDTVFG----------EGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE 132 (262)
T ss_pred ceeEEEeccCceEEEEeecCCccccc----------cceeec-----cceEEEEEeccceeEEEChHHhhhhcccccCCc
Confidence 578999999888765443331 0000 222222 233333345678888999999888888876676
Q ss_pred EEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEe--ccCCce---EEEEEcCCCCEEEEEecCCeEEEEEcc-cce
Q psy11036 87 VESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFT--CHHKTV---TSLCLASGGKRLISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 87 v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~--~~~~~i---~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 159 (239)
=..++.. +..+..+. ...+..-|.+ +.....++. ....+| +.+.|- +|...|-.=.+..|...+.+ ++.
T Consensus 133 GWgLt~d--~~~LimsdGsatL~frdP~-tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 133 GWGLTSD--DKNLIMSDGSATLQFRDPK-TFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred ceeeecC--CcceEeeCCceEEEecCHH-HhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 6666654 33344433 4556665654 322222221 111222 223332 44444433333334333433 222
Q ss_pred EeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC-CeEEEEc
Q psy11036 160 VSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISAS 207 (239)
Q Consensus 160 ~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s 207 (239)
+..+|+..-...+..-..|..-...+++.|++ ++++||-
T Consensus 209 ---------~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 209 ---------VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ---------EEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 22223322112222223345567789999976 6666663
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.28 Score=41.22 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=29.5
Q ss_pred cEEEEEEcc----CCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 190 TVTSLCLAS----GGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 190 ~v~~~~~s~----~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
....+++++ +..+|++.+.|+++|+||+.+++++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 345556655 67899999999999999999999977764
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.0021 Score=51.02 Aligned_cols=141 Identities=12% Similarity=0.143 Sum_probs=92.1
Q ss_pred eEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEE
Q psy11036 45 VRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKF 122 (239)
Q Consensus 45 v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~ 122 (239)
.....|.|.+.+ ++.++.+-.+..||-. ++.......++....++|..++..+++.. .+.+.+||+.......-.+
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 345678884444 7777778888889854 44555556677788899999888777666 5899999996322211111
Q ss_pred e-ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC
Q psy11036 123 T-CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK 201 (239)
Q Consensus 123 ~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 201 (239)
. .|.... +.|++....++.+...|.+.|++.. ..+....+..|...++++++.+.+.
T Consensus 115 gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhg--------------------tsR~iiv~Gkh~RRgtq~av~lEd~ 172 (615)
T KOG2247|consen 115 GGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHG--------------------TSRRIIVMGKHQRRGTQIAVTLEDY 172 (615)
T ss_pred cCcchHHH--HhhccCCccccccccccceEEEecc--------------------chhhhhhhcccccceeEEEecccce
Confidence 1 122222 6788888888888888999888876 1122222233777888888887655
Q ss_pred eEEEEcCCc
Q psy11036 202 RLISASLDH 210 (239)
Q Consensus 202 ~l~s~s~d~ 210 (239)
.+ .++.|.
T Consensus 173 vi-l~dcd~ 180 (615)
T KOG2247|consen 173 VI-LCDCDN 180 (615)
T ss_pred ee-ecCcHH
Confidence 43 343343
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.12 Score=45.82 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=69.3
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-ceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD-PVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
....++.|+|.=....+....|+.|++..+.... .+..+.....+++++|+|.|+.++.|. .|++.-|... .+...
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~ 233 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKS 233 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc--cceee
Confidence 4466889998444456777889999998876433 333456778899999999999999998 5888877653 33333
Q ss_pred EEec----cCCceEEEEEcCCCCEEEE
Q psy11036 121 KFTC----HHKTVTSLCLASGGKRLIS 143 (239)
Q Consensus 121 ~~~~----~~~~i~~i~~~~~~~~l~~ 143 (239)
.+.. ....|.+++|-..-.++++
T Consensus 234 ~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 234 EIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cccCCCcCCCcceeEEEEecceeEEEE
Confidence 3321 1367899999766555554
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.4 Score=33.60 Aligned_cols=182 Identities=14% Similarity=0.154 Sum_probs=108.2
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCC------CCCc-eeeec------CCCCEEEEEEecCCc------------
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTR------SPDP-VMSVN------HGSPVESVLCLPSGG------------ 97 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~------~~~~-~~~~~------~~~~v~~~~~~~~~~------------ 97 (239)
..-..|+++| .+.+-++....+...+||.. ..+. +.++. .....+.+.|+....
T Consensus 23 ~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 3456899999 77777777777899999986 1222 22332 234577777774332
Q ss_pred -EEEEeCCCcEEEEEccCCCe----EEEEEecc--CCceEEEEEcCC--CCEEEEE-ecCCeEEEEEcccceEee---e-
Q psy11036 98 -IFVTGGGLDVCIWDMLGGGK----LLHKFTCH--HKTVTSLCLASG--GKRLISA-SLDHHAKIYEMTLKTVSS---F- 163 (239)
Q Consensus 98 -~l~~~~~~~i~~~d~~~~~~----~~~~~~~~--~~~i~~i~~~~~--~~~l~~~-~~d~~i~i~d~~~~~~~~---~- 163 (239)
+|.++.+|+|.-|....... ....+... ...-..+++... +.+|..+ -..++|.+||-....+.. +
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 34444479999998532211 11222211 122345565533 4455444 457899999876332111 1
Q ss_pred -------------------------------------ecceeEEEEEccCCCEEEEEEe--cccCcEEEEEEcc------
Q psy11036 164 -------------------------------------TGGLDVCIWDMLGGGKLLHKFT--CHHKTVTSLCLAS------ 198 (239)
Q Consensus 164 -------------------------------------~~~~~i~~~d~~~~~~~~~~~~--~h~~~v~~~~~s~------ 198 (239)
.|.+-|-+||.. +..++.+. +.-..-+.|+..|
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN--GQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC--CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 123346777764 45555542 2334456677765
Q ss_pred CCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 199 GGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 199 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.|.+|+---.||+|..||..+++.+..+.
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeec
Confidence 46677766679999999999998887776
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.017 Score=49.56 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=66.5
Q ss_pred cCCCCEEEEEEec-CCcEEEEeC-CCcEEEEEccC-CCeE-----EEEEeccCCceEEEEEcC---CCCEEEEEecCCeE
Q psy11036 82 NHGSPVESVLCLP-SGGIFVTGG-GLDVCIWDMLG-GGKL-----LHKFTCHHKTVTSLCLAS---GGKRLISASLDHHA 150 (239)
Q Consensus 82 ~~~~~v~~~~~~~-~~~~l~~~~-~~~i~~~d~~~-~~~~-----~~~~~~~~~~i~~i~~~~---~~~~l~~~~~d~~i 150 (239)
+..+.+-.++|.. +...+. . -|.+.+|++.. .++. ++........+.-+.|.| +..++..+-.++.+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 3556666666643 111121 2 27889998752 1222 222233344556666665 56778888888888
Q ss_pred EEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEE-----------EEccCCCeEEEEcCCceEEEEEc
Q psy11036 151 KIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSL-----------CLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 151 ~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~-----------~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
++..... .....+.+|...+..+ .+||||..++.++.||.++.|.+
T Consensus 208 ~lL~~~r---------------------a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 208 RLLNINR---------------------ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eEeeech---------------------HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 8776651 0011122344433332 37999999999999999888865
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.22 Score=36.33 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=46.7
Q ss_pred EcCCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceE
Q psy11036 134 LASGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 212 (239)
Q Consensus 134 ~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i 212 (239)
+..++.++++.+.+|.+++||+. .+.+..-. .+..+-.... .. -......|..+.++.+|.-+++-+ +|..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-----Si~pll~~~~-~~-~~~~~~~i~~~~lt~~G~PiV~ls-ng~~ 89 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV-----SIAPLLNSSP-VS-DKSSSPNITSCSLTSNGVPIVTLS-NGDS 89 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc-----cHHHHhcccc-cc-cCCCCCcEEEEEEcCCCCEEEEEe-CCCE
Confidence 44578899999999999999998 33322210 0000000000 00 003456788888888888777765 4778
Q ss_pred EEEEcc
Q psy11036 213 KIYEMV 218 (239)
Q Consensus 213 ~iwd~~ 218 (239)
+.|+..
T Consensus 90 y~y~~~ 95 (219)
T PF07569_consen 90 YSYSPD 95 (219)
T ss_pred EEeccc
Confidence 888764
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.4 Score=35.55 Aligned_cols=99 Identities=15% Similarity=0.101 Sum_probs=59.2
Q ss_pred ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecceeE--EEEEccCCCEEEEEEecccCcEEEEEEcc-C
Q psy11036 124 CHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDV--CIWDMLGGGKLLHKFTCHHKTVTSLCLAS-G 199 (239)
Q Consensus 124 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i--~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~ 199 (239)
.....+.+++.+|.+++.++...=|.|.++|+. +..++.+.|-.+. ..+........ |...-....-.+ .
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~------~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDR------DRSNSNSPKSSSRF 378 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeeccccc------ccccccccCCCCcc
Confidence 344568899999999988888778999999999 6666666554441 11111111000 000000000000 0
Q ss_pred CCeE-EEEcCCceEEEEEccCCeeeEEecC
Q psy11036 200 GKRL-ISASLDHHAKIYEMVNFSPVHTLDY 228 (239)
Q Consensus 200 ~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~ 228 (239)
..+| +-+-.-|.|-||.+++|..+..+..
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 1223 3355689999999999999988873
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.25 E-value=2.9 Score=36.42 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=65.7
Q ss_pred CCCEEEEeeCCCcceee-eeeCCce----eeccce---eeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC---
Q psy11036 6 PILIVALWDIPSEAQVS-TFTNHTT----IYKVPL---MLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS--- 74 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~-~~~~~~~----~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~--- 74 (239)
.|+.+++||-....... .++.... .-+.+. .+-.+..-.|..+.++| ++.+++..|..| |.|-.+..
T Consensus 40 ~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g 117 (717)
T PF10168_consen 40 RDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWG 117 (717)
T ss_pred eCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccC
Confidence 56899999975544321 1221110 001111 22233345788999999 788888777765 44444321
Q ss_pred -------CCc-e--eee---------cCCCCEEEEEEecC---CcEEE-EeCCCcEEEEEccCCCeEEEEE
Q psy11036 75 -------PDP-V--MSV---------NHGSPVESVLCLPS---GGIFV-TGGGLDVCIWDMLGGGKLLHKF 122 (239)
Q Consensus 75 -------~~~-~--~~~---------~~~~~v~~~~~~~~---~~~l~-~~~~~~i~~~d~~~~~~~~~~~ 122 (239)
++. + +++ .....|..+.|+|. +..|+ ..+|+.+++||+.....+...+
T Consensus 118 ~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 118 KNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred ccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCeEEE
Confidence 111 1 111 13457899999995 34554 4559999999997545444444
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.20 E-value=1.8 Score=32.50 Aligned_cols=130 Identities=10% Similarity=0.021 Sum_probs=78.3
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCE
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPV 87 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v 87 (239)
..|+.+|+.+++......-... ---..++... +.+..-.-.++...+||..+.+.+.++...+.=
T Consensus 68 S~l~~~d~~tg~~~~~~~l~~~-------------~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EG 132 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSVPLPPR-------------YFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEG 132 (264)
T ss_dssp EEEEEEETTTSSEEEEEE-TTT---------------EEEEEEET--TEEEEEESSSSEEEEEETTTTEEEEEEE-SSS-
T ss_pred EEEEEEECCCCcEEEEEECCcc-------------ccceeEEEEC--CEEEEEEecCCeEEEEccccceEEEEEecCCcc
Confidence 3788899999987766554431 2223455543 455555567899999999999888888666666
Q ss_pred EEEEEecCCcEEEEe-CCCcEEEEEccCCCeEEEEEeccC--C---ceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 88 ESVLCLPSGGIFVTG-GGLDVCIWDMLGGGKLLHKFTCHH--K---TVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 88 ~~~~~~~~~~~l~~~-~~~~i~~~d~~~~~~~~~~~~~~~--~---~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
..++ .+++.|+.+ ++..+..+|.. +.+...++.-.. . .++.+.+- +|...|-.=....|...|..
T Consensus 133 WGLt--~dg~~Li~SDGS~~L~~~dP~-~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~ 203 (264)
T PF05096_consen 133 WGLT--SDGKRLIMSDGSSRLYFLDPE-TFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPE 203 (264)
T ss_dssp -EEE--ECSSCEEEE-SSSEEEEE-TT-T-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETT
T ss_pred eEEE--cCCCEEEEECCccceEEECCc-ccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCC
Confidence 6676 345555544 47889999987 566665554321 1 34556664 55555555555566666665
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.15 E-value=3.4 Score=35.68 Aligned_cols=144 Identities=7% Similarity=0.118 Sum_probs=86.2
Q ss_pred CCEEEEeeCCCeEEEEeCCCCCce------eee-----------------cCCCCEEEEEEec--CCcEEEEeC-CCcEE
Q psy11036 55 SDIVISGSYDKTVNVYDTRSPDPV------MSV-----------------NHGSPVESVLCLP--SGGIFVTGG-GLDVC 108 (239)
Q Consensus 55 ~~~l~s~~~dg~v~vw~~~~~~~~------~~~-----------------~~~~~v~~~~~~~--~~~~l~~~~-~~~i~ 108 (239)
.++++.+. .+.|.||+....... ..+ ..+..|+.|.... ....|+++. ||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 45666654 578999997533211 111 0112244444332 334555555 69999
Q ss_pred EEEccC-------C---C---------eEEEEEeccCCceEEEEEc--CCCCEEEEEecCCeEEEEEcccceEeeeecce
Q psy11036 109 IWDMLG-------G---G---------KLLHKFTCHHKTVTSLCLA--SGGKRLISASLDHHAKIYEMTLKTVSSFTGGL 167 (239)
Q Consensus 109 ~~d~~~-------~---~---------~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 167 (239)
+|.++. . . ++...+. ....+.+++++ ...++||+++....|.||-.....
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~-------- 198 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD-------- 198 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccc--------
Confidence 997631 0 0 0112222 34578999998 778899999998999888765110
Q ss_pred eEEEEEccCCCEEEEEEecccCcEEEEEEccCC---C---eEEEEcCCceEEEEEc
Q psy11036 168 DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG---K---RLISASLDHHAKIYEM 217 (239)
Q Consensus 168 ~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~---~---~l~s~s~d~~i~iwd~ 217 (239)
.......-..|...|.+++|-++. . .|++++-.|.+.+|++
T Consensus 199 ---------~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 199 ---------ERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ---------cccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 011111112356778899998743 2 7888899999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=94.05 E-value=2 Score=32.67 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=59.3
Q ss_pred CCCCCC--CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee------CCCeEEEEeC
Q psy11036 1 MSHDLP--ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS------YDKTVNVYDT 72 (239)
Q Consensus 1 fs~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~dg~v~vw~~ 72 (239)
|...|. =..|++||..+.+=...-.+-. +.|+++.|.. +.++++.|. ....+..||+
T Consensus 7 F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~--------------G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~ 71 (281)
T PF12768_consen 7 FTSAGSLPCPGLCLYDTDNSQWSSPGNGIS--------------GTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDF 71 (281)
T ss_pred cCCCCCcCCCEEEEEECCCCEeecCCCCce--------------EEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEec
Confidence 444443 3689999987655333223333 7899999986 667777664 3567889998
Q ss_pred CCCCceeeec-----CCCCEEEEEEec-CCc-EEEEeC--C--CcEEEEEcc
Q psy11036 73 RSPDPVMSVN-----HGSPVESVLCLP-SGG-IFVTGG--G--LDVCIWDML 113 (239)
Q Consensus 73 ~~~~~~~~~~-----~~~~v~~~~~~~-~~~-~l~~~~--~--~~i~~~d~~ 113 (239)
.+......-. .++++..+.+.. ++. ..++|. + ..|..||-.
T Consensus 72 ~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 72 KNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred CCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 8765422222 247888887754 333 333433 2 346666543
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.49 E-value=2.8 Score=32.35 Aligned_cols=137 Identities=9% Similarity=0.084 Sum_probs=66.0
Q ss_pred cCCCCEEEEEEecCCcEEEEeCCCcEE-EEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceE
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTV 160 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~~~~i~-~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 160 (239)
...+.+..+.-+++|++++++..|.+. -||.-...-..+. ..-...|..|.|.|++...+.+ ..|.|+.=+.. .
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~-~-- 216 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP-D-- 216 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T-T--
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEccCC-C--
Confidence 455778889999999999999977765 5665311112222 2246789999999998766654 88888876621 0
Q ss_pred eeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec----CCCCeeeeE
Q psy11036 161 SSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD----YPSPVLSID 236 (239)
Q Consensus 161 ~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~ 236 (239)
+..-|. +.......-.-.+..++|.+++...++|+. |.+ +.....|+.-++.+ .++.++.+.
T Consensus 217 -------~~~~w~-----~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~ 282 (302)
T PF14870_consen 217 -------DGETWS-----EPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIV 282 (302)
T ss_dssp -------EEEEE--------B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEE
T ss_pred -------Cccccc-----cccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEE
Confidence 011111 000001112234789999998888776654 443 33344444433332 234455554
Q ss_pred e
Q psy11036 237 V 237 (239)
Q Consensus 237 ~ 237 (239)
|
T Consensus 283 f 283 (302)
T PF14870_consen 283 F 283 (302)
T ss_dssp E
T ss_pred E
Confidence 4
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=93.36 E-value=3.3 Score=32.91 Aligned_cols=190 Identities=13% Similarity=0.198 Sum_probs=83.7
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC---CC-eEEEEeCCCC-Cceeee
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY---DK-TVNVYDTRSP-DPVMSV 81 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg-~v~vw~~~~~-~~~~~~ 81 (239)
...|.--|+.+|+....+... ..+.-+.|+|.+..+|+-|-+ +. .-|||-+++. .....+
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~---------------~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v 231 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDT---------------DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV 231 (386)
T ss_dssp -EEEEEEETTT--EEEEEEES---------------S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES
T ss_pred CceEEEEECCCCceeEEEecC---------------ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee
Confidence 345666788888876666554 778899999977777666433 22 2367766432 222322
Q ss_pred -c--CCCCEEEEEEecCCcEEEEeC---C---CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy11036 82 -N--HGSPVESVLCLPSGGIFVTGG---G---LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 152 (239)
Q Consensus 82 -~--~~~~v~~~~~~~~~~~l~~~~---~---~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 152 (239)
. ....+..=-|.|+|..+.--+ . ..|.-+|+. +++...... ......+-.++||++++-=+.|..+.+
T Consensus 232 ~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~-t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v 308 (386)
T PF14583_consen 232 HRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD-TGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDV 308 (386)
T ss_dssp S---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT-T--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------
T ss_pred ecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC-CCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccc
Confidence 2 223445556889998776533 2 346667776 443322222 123445556788887766555433322
Q ss_pred EEcccceEeeeecceeEEEEEccCCCEE-EE-------EEecccC-cEEEEEEccCCCeEE-EEcCCceEEEEEc
Q psy11036 153 YEMTLKTVSSFTGGLDVCIWDMLGGGKL-LH-------KFTCHHK-TVTSLCLASGGKRLI-SASLDHHAKIYEM 217 (239)
Q Consensus 153 ~d~~~~~~~~~~~~~~i~~~d~~~~~~~-~~-------~~~~h~~-~v~~~~~s~~~~~l~-s~s~d~~i~iwd~ 217 (239)
=+..+ ..+.....++++++...... +. .+.++.. .=....|+|||++++ ++...|...||-+
T Consensus 309 ~~~~~---~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 309 ADAGG---YKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ccccc---ceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 11111 01112223555665542211 11 1111111 124679999999765 5556777776644
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=3.9 Score=34.34 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=32.2
Q ss_pred CCCEEEEeeCCC------eEEEEeCCCCCceeeecC--CCCEEEEEEecCCcEEEEeC-C-----CcEEEEEcc
Q psy11036 54 SSDIVISGSYDK------TVNVYDTRSPDPVMSVNH--GSPVESVLCLPSGGIFVTGG-G-----LDVCIWDML 113 (239)
Q Consensus 54 ~~~~l~s~~~dg------~v~vw~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~-~-----~~i~~~d~~ 113 (239)
++.+++.|+.++ .+..||..+.+....-.. ...-.+++ .-++..++.|+ + ..+..||..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCC
Confidence 556777777543 567888877654322111 11111222 23567777777 3 346778876
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=93.32 E-value=2.4 Score=31.16 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=58.3
Q ss_pred CCEEEEEEecCCcEEEEeC--CCcEEEEEccC-CC-----eEEEEEec----cCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy11036 85 SPVESVLCLPSGGIFVTGG--GLDVCIWDMLG-GG-----KLLHKFTC----HHKTVTSLCLASGGKRLISASLDHHAKI 152 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~-~~-----~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~d~~i~i 152 (239)
.--+.++|+.+.+.+.... +-+|.-||..- ++ +.+..++. ....--.++...+|++.+++-..++|..
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 3346788998888777766 46676677321 22 22222221 0111233445567777777777777777
Q ss_pred EEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc
Q psy11036 153 YEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS 198 (239)
Q Consensus 153 ~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~ 198 (239)
.|.. +++.+.+++-....|++++|--
T Consensus 238 ~dp~--------------------tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 238 VDPT--------------------TGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ECCC--------------------CCcEEEEEEcCCCceEEEEecC
Confidence 7766 4666777677788899999963
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=4.1 Score=33.80 Aligned_cols=60 Identities=13% Similarity=0.090 Sum_probs=33.5
Q ss_pred CCCEEEEeeCC--CeEEEEeCCCCCceeeecCCCCE-EEEEEecCCcEEEEeC-C---CcEEEEEcc
Q psy11036 54 SSDIVISGSYD--KTVNVYDTRSPDPVMSVNHGSPV-ESVLCLPSGGIFVTGG-G---LDVCIWDML 113 (239)
Q Consensus 54 ~~~~l~s~~~d--g~v~vw~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~-~---~~i~~~d~~ 113 (239)
++.+.+.|+.+ ..+..||..+++....-....+. ......-+++..+.|+ + ..+..||.+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCC
Confidence 67788888864 35788887665433221211111 1112223577777777 3 347788876
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.44 Score=24.09 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=25.2
Q ss_pred CCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEE
Q psy11036 55 SDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLC 92 (239)
Q Consensus 55 ~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~ 92 (239)
+.++++...+++|.++|..+++.+..+........+.+
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 33455555688999999988887777754444444444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=93.21 E-value=3.2 Score=33.58 Aligned_cols=38 Identities=16% Similarity=-0.056 Sum_probs=32.7
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
..+.+++.+| ++++.++...=|.|.++|+.++..++.+
T Consensus 308 R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmW 345 (415)
T PF14655_consen 308 REGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMW 345 (415)
T ss_pred ceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhh
Confidence 6789999999 7888888777799999999998877666
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.99 Score=31.60 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=23.8
Q ss_pred ceEEEEEcCCC------CEEEEEecCCeEEEEEcc
Q psy11036 128 TVTSLCLASGG------KRLISASLDHHAKIYEMT 156 (239)
Q Consensus 128 ~i~~i~~~~~~------~~l~~~~~d~~i~i~d~~ 156 (239)
.+..++|+|.| -.|++.+.++.+.||...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 78899999955 268888899999999765
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=92.64 E-value=3.6 Score=31.37 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=60.3
Q ss_pred CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEe------cCCeEEEEEcccceEeeeecceeEEEEEccCCC
Q psy11036 105 LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS------LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178 (239)
Q Consensus 105 ~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~ 178 (239)
..|++||.. ..+-...-.+-.+.|+.+.|..+.+.++.|. ....+..||+..+.
T Consensus 16 ~~lC~yd~~-~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~------------------- 75 (281)
T PF12768_consen 16 PGLCLYDTD-NSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT------------------- 75 (281)
T ss_pred CEEEEEECC-CCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-------------------
Confidence 459999987 4444433344667899999986666666654 23345555555221
Q ss_pred EEEEEEec-----ccCcEEEEEEcc-CC-CeEEEEc-C--CceEEEEEccCCeeeEE--ecCCCCeeeeEe
Q psy11036 179 KLLHKFTC-----HHKTVTSLCLAS-GG-KRLISAS-L--DHHAKIYEMVNFSPVHT--LDYPSPVLSIDV 237 (239)
Q Consensus 179 ~~~~~~~~-----h~~~v~~~~~s~-~~-~~l~s~s-~--d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~ 237 (239)
...+.+ -.++|..+.+.. |+ ++.+.|. . +..|..||=.++..+.. +.....|..+.+
T Consensus 76 --w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 76 --WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred --eeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 111222 135677776643 33 3343332 2 33567777666655554 223345655554
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.53 Score=23.47 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=24.8
Q ss_pred eEEEEcCCceEEEEEccCCeeeEEecCCCC
Q psy11036 202 RLISASLDHHAKIYEMVNFSPVHTLDYPSP 231 (239)
Q Consensus 202 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~ 231 (239)
.++.++.||.|.-.|.++|+.+.+++....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence 355568999999999999999999885543
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=92.50 E-value=1.4 Score=27.03 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=31.0
Q ss_pred eeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC
Q psy11036 61 GSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG 103 (239)
Q Consensus 61 ~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 103 (239)
+..+|.+..||..+++....+..-.-.+.++.++++..++++.
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 4556889999999887655554445678999999999888887
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=92.41 E-value=2.2 Score=28.33 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=63.6
Q ss_pred EEEecCCcEEEEeC-CCcEEEEEccCCC-------eEEEEEeccCCceEEEEEcC----C-CCEEEEEecCCeEEEEEcc
Q psy11036 90 VLCLPSGGIFVTGG-GLDVCIWDMLGGG-------KLLHKFTCHHKTVTSLCLAS----G-GKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 90 ~~~~~~~~~l~~~~-~~~i~~~d~~~~~-------~~~~~~~~~~~~i~~i~~~~----~-~~~l~~~~~d~~i~i~d~~ 156 (239)
-+|......|+++. .+.|.|++..... ..+..+. -...|++++-.+ + ...|+.| ....+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEcc
Confidence 45666666777777 6899999876322 1233333 456677776543 2 2345555 45567777776
Q ss_pred cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEc---cCCCeEEEEcCCceEEEEEccCCeeeEEe
Q psy11036 157 LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA---SGGKRLISASLDHHAKIYEMVNFSPVHTL 226 (239)
Q Consensus 157 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s---~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 226 (239)
+..... ++.-...|.++.+- ....-|+..+.+..|.-||.+-.+...+.
T Consensus 82 -------------------~N~d~F--yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 -------------------NNSDLF--YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred -------------------cCchhh--hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 111111 12223456666553 22234555556788888888666665543
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.2 Score=38.58 Aligned_cols=90 Identities=9% Similarity=0.007 Sum_probs=54.7
Q ss_pred EEEEecCCCCEEEEeeCCC-----eEEEEeC---CCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeE
Q psy11036 47 AGTVSPVSSDIVISGSYDK-----TVNVYDT---RSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKL 118 (239)
Q Consensus 47 ~~~~~~~~~~~l~s~~~dg-----~v~vw~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~ 118 (239)
-+.|-| .|..+++-+.|| .|..+.- +-|+.-...+....+...+|+-....++++..+.+.+|-.. +..-
T Consensus 251 ~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttk-NyhW 328 (1243)
T COG5290 251 QLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTK-NYHW 328 (1243)
T ss_pred cccccc-CCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEcc-ceEE
Confidence 378999 688888876554 3444442 22333233345566777888777777777778889999876 3332
Q ss_pred EEEEeccCCceEEEEEcCCC
Q psy11036 119 LHKFTCHHKTVTSLCLASGG 138 (239)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~~ 138 (239)
.-+..-.-..+.-+.|+|..
T Consensus 329 YLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 329 YLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEEEeecCCCcceeeecccc
Confidence 22222233445667777754
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=92.04 E-value=8.3 Score=34.18 Aligned_cols=111 Identities=6% Similarity=-0.002 Sum_probs=73.5
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC----ceeee--cCCCC----------EEEEEEecCCcEEEEeCCCc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD----PVMSV--NHGSP----------VESVLCLPSGGIFVTGGGLD 106 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~----~~~~~--~~~~~----------v~~~~~~~~~~~l~~~~~~~ 106 (239)
.+...++|+|.+...||.....|...||++.... ....+ ...+. -..+.|.++...|++.+...
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~ 225 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK 225 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence 5677999999878899999999999999992111 11111 11222 23788988888999999899
Q ss_pred EEEEEccCCCeEEE--EEeccCCceEEEEEcCCC--CEEEEEecCCeEEEEEcc
Q psy11036 107 VCIWDMLGGGKLLH--KFTCHHKTVTSLCLASGG--KRLISASLDHHAKIYEMT 156 (239)
Q Consensus 107 i~~~d~~~~~~~~~--~~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~i~d~~ 156 (239)
+.++|++ ...... ........|..+.-+|.. ..++. ....|...++.
T Consensus 226 l~~~d~~-~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~ 276 (765)
T PF10214_consen 226 LMLIDFE-SNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVK 276 (765)
T ss_pred eEEEECC-CCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEcc
Confidence 9999998 333322 112234578888888862 33332 23566666666
|
These proteins are found in fungi. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=91.96 E-value=4 Score=30.36 Aligned_cols=145 Identities=17% Similarity=0.157 Sum_probs=74.9
Q ss_pred EEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC--C--CcEEEEEccC---CCeEEE---EEeccCCceEEEEEc
Q psy11036 67 VNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG--G--LDVCIWDMLG---GGKLLH---KFTCHHKTVTSLCLA 135 (239)
Q Consensus 67 v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~--~~i~~~d~~~---~~~~~~---~~~~~~~~i~~i~~~ 135 (239)
-.+||+.+++....- ....-+.+-.+.++|+++.+|+ + ..+++++... ...... .+. ...---....-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence 347898887643221 2222233345678999999998 3 4588888652 011111 111 11222234445
Q ss_pred CCCCEEEEEecCCe-EEEEEcccceEeeeecceeEEEEEccCCCEEEEEE--ecccCcEEEEEEccCCCeEEEEcCCceE
Q psy11036 136 SGGKRLISASLDHH-AKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKF--TCHHKTVTSLCLASGGKRLISASLDHHA 212 (239)
Q Consensus 136 ~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~d~~i 212 (239)
|||+.|+.|+.+.. ..+|.-+.. .....-+.. +... .....--.-+...|+|++++.+..+ -
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~-------~~~~~~~~~------l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s 191 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGP-------GPGPVTLPF------LSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--S 191 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccC-------CCCceeeec------chhhhccCccccCceEEEcCCCCEEEEEcCC--c
Confidence 79999999888742 223322100 000000000 0000 0011112345678999999888765 4
Q ss_pred EEEEccCCeeeEEec
Q psy11036 213 KIYEMVNFSPVHTLD 227 (239)
Q Consensus 213 ~iwd~~~~~~~~~~~ 227 (239)
.|||..+.+.++.+.
T Consensus 192 ~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 192 IIYDYKTNTVVRTLP 206 (243)
T ss_pred EEEeCCCCeEEeeCC
Confidence 567888887777765
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG1983|consensus | Back alignment and domain information |
|---|
Probab=91.93 E-value=2.9 Score=37.91 Aligned_cols=31 Identities=13% Similarity=0.296 Sum_probs=25.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS 74 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 74 (239)
.....++|+| ...+++.+..+|.++++-...
T Consensus 36 ~~~~~~afD~-~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDP-TQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeecc-ccceEEEEEecccEEEecccc
Confidence 3456789999 789999999999999998653
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=91.80 E-value=2.3 Score=34.59 Aligned_cols=29 Identities=7% Similarity=0.299 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 128 TVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 128 ~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
.|..++..+..+.+++...++.|.+|++.
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 38888888888899999999999999997
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.76 Score=21.77 Aligned_cols=25 Identities=12% Similarity=-0.039 Sum_probs=21.2
Q ss_pred eEEEEcCCceEEEEEccCCeeeEEe
Q psy11036 202 RLISASLDHHAKIYEMVNFSPVHTL 226 (239)
Q Consensus 202 ~l~s~s~d~~i~iwd~~~~~~~~~~ 226 (239)
.++.++.+|.+..+|.++|+.+.++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999999987654
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=91.36 E-value=4 Score=37.41 Aligned_cols=154 Identities=12% Similarity=0.183 Sum_probs=85.7
Q ss_pred eCCCeEEEEeCCCCCceeee-cCCCCEEEEEEe--------cCCc-EEEEeCCCcEEEEEccC---CCe-----EEEEEe
Q psy11036 62 SYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCL--------PSGG-IFVTGGGLDVCIWDMLG---GGK-----LLHKFT 123 (239)
Q Consensus 62 ~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~--------~~~~-~l~~~~~~~i~~~d~~~---~~~-----~~~~~~ 123 (239)
+-|..+.+|+.+++.....+ +....|..+..- |.=+ .|+.+.--.|.++-+.. ++. ...++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45788999999987666666 344455554432 2222 44444455566654421 111 002222
Q ss_pred ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCC-----CEEEEEE-ecccCcEEEEEEc
Q psy11036 124 CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGG-----GKLLHKF-TCHHKTVTSLCLA 197 (239)
Q Consensus 124 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~-----~~~~~~~-~~h~~~v~~~~~s 197 (239)
.....|.++....+|+.+.+| .|| .+|.+..+....+-+.. .+..++... -..+..+ ..+..+|..++..
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~r-c~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSR-CRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcc-cccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 335578889877888877776 555 45655411111110000 000000000 0001122 2567799999998
Q ss_pred cCCCeEEEEcCCceEEEEEccC
Q psy11036 198 SGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 198 ~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
.....|.+-+..|+|.+||+..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 8888999999999999999965
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=91.32 E-value=5.4 Score=30.58 Aligned_cols=141 Identities=9% Similarity=0.102 Sum_probs=77.9
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCC-----CEEEEeeCCCeEEEEeCCCCCceeeec
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSS-----DIVISGSYDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~l~s~~~dg~v~vw~~~~~~~~~~~~ 82 (239)
-.|.+||+.+++.++++.-+... ....+.+..+.+...++ ...++=+..+-+.|+|+.+++..+.+.
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~--------~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~ 105 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDI--------APPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLH 105 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCC--------S-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEET
T ss_pred cEEEEEECCCCcEEEEEECChHH--------cccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEec
Confidence 37888999999988887655411 11236788888887332 233444445689999999887554431
Q ss_pred --------------------CCCCEEEEEEec---CCcEEEEeCCCcEEEEEccC-----C--------CeEEEEEeccC
Q psy11036 83 --------------------HGSPVESVLCLP---SGGIFVTGGGLDVCIWDMLG-----G--------GKLLHKFTCHH 126 (239)
Q Consensus 83 --------------------~~~~v~~~~~~~---~~~~l~~~~~~~i~~~d~~~-----~--------~~~~~~~~~~~ 126 (239)
....+..++.+| +++.|+-..-..-++|.+.. . ...++.+-...
T Consensus 106 ~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~ 185 (287)
T PF03022_consen 106 NSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG 185 (287)
T ss_dssp CGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE--
T ss_pred CCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccC
Confidence 112244555544 44455544311122332210 0 01112221112
Q ss_pred CceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 127 KTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 127 ~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
.....++.+++|..+++--..+.|..|+..
T Consensus 186 ~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~ 215 (287)
T PF03022_consen 186 SQSDGMAIDPNGNLYFTDVEQNAIGCWDPD 215 (287)
T ss_dssp -SECEEEEETTTEEEEEECCCTEEEEEETT
T ss_pred CCCceEEECCCCcEEEecCCCCeEEEEeCC
Confidence 355678888888888888888889888877
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=90.95 E-value=5.2 Score=29.77 Aligned_cols=105 Identities=18% Similarity=0.309 Sum_probs=56.9
Q ss_pred EEecCCCCEEEEeeCC---CeEEEEeCCC----CCcee---eecCCCCEEEEEEecCCcEEEEeCC--CcEEEEEccCCC
Q psy11036 49 TVSPVSSDIVISGSYD---KTVNVYDTRS----PDPVM---SVNHGSPVESVLCLPSGGIFVTGGG--LDVCIWDMLGGG 116 (239)
Q Consensus 49 ~~~~~~~~~l~s~~~d---g~v~vw~~~~----~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~--~~i~~~d~~~~~ 116 (239)
.+.+ +|+++.+|+.. ..+++++..+ ..... .+.....=-....-|||+.++.|+. ....+|..+...
T Consensus 73 ~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~ 151 (243)
T PF07250_consen 73 AFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG 151 (243)
T ss_pred CCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCC
Confidence 4456 78888888752 3577887654 11111 1222233334455679999999983 445666543111
Q ss_pred eEEEE---Eec-----cCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 117 KLLHK---FTC-----HHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 117 ~~~~~---~~~-----~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
..... +.. ...----+-..|+|+.++.+..+.. |||..
T Consensus 152 ~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~ 197 (243)
T PF07250_consen 152 PGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYK 197 (243)
T ss_pred CCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCC
Confidence 11111 110 0111224556789999988876554 55766
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=90.91 E-value=5.4 Score=34.65 Aligned_cols=130 Identities=12% Similarity=0.202 Sum_probs=71.4
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKF 122 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~ 122 (239)
..++++.-+| +++-++.+..||.+++|+..............+-..+.|...| ++...+|..+.-|.-. +-..+.+
T Consensus 15 e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg-l~~~tsdrr~la~~~d--gvvqqqf 90 (1636)
T KOG3616|consen 15 EFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG-LVTATSDRRALAWKED--GVVQQQF 90 (1636)
T ss_pred ceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc-eEEEeccchhheeecc--Ccchhhc
Confidence 5688899899 8999999999999999998655432222223344455565444 3333446666667543 3222222
Q ss_pred ec---cCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-------cceEeeeecceeEEEEEccCC
Q psy11036 123 TC---HHKTVTSLCLASGGKRLISASLDHHAKIYEMT-------LKTVSSFTGGLDVCIWDMLGG 177 (239)
Q Consensus 123 ~~---~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-------~~~~~~~~~~~~i~~~d~~~~ 177 (239)
.. ......++...|..+. ++|..-|-|.-+|.- .+.-.++.+...+.+-|+.++
T Consensus 91 dyndqsekefss~~cdptaqn-vvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~ 154 (1636)
T KOG3616|consen 91 DYNDQSEKEFSSILCDPTAQN-VVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSND 154 (1636)
T ss_pred cccchhhhhccceecCchhhh-hhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCC
Confidence 21 1123344545554332 233334445545432 223334456666777776654
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.71 E-value=2.3 Score=34.40 Aligned_cols=156 Identities=14% Similarity=0.108 Sum_probs=82.1
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce-eee-c-CCC----CEE-EEEEecCCcEEEEeC-CCcEEEE-Ec
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV-MSV-N-HGS----PVE-SVLCLPSGGIFVTGG-GLDVCIW-DM 112 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~-~~~-~-~~~----~v~-~~~~~~~~~~l~~~~-~~~i~~~-d~ 112 (239)
..|..+-..| +++.+..-+. .++.++++.+.... +++ . .++ .|+ ++..-..|..+.++. ||-|.-| |.
T Consensus 221 ~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 221 SDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred cchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 7788889999 6776655443 57888887654322 122 1 122 121 111122344455555 7777655 66
Q ss_pred cCCCeEE-E---EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEeccc
Q psy11036 113 LGGGKLL-H---KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH 188 (239)
Q Consensus 113 ~~~~~~~-~---~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~ 188 (239)
+..+.+. . .++-...++.-+.-..+.+-+++-+..|++.++... .+...-++.-.
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st---------------------~~~~lL~~~~~ 357 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYST---------------------SEKLLLFERAY 357 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecc---------------------cCcceehhhhh
Confidence 5433311 1 111111222222222223446666666666555433 11111112223
Q ss_pred CcEEEEEEccCCCeEEEEcCCceEEEEEccCCee
Q psy11036 189 KTVTSLCLASGGKRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 189 ~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
..+..+++||++.+|++- ..|.++++.+++..+
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred cCcceeeeCcccchheee-cCCceEEEEecCCCC
Confidence 456778999999999865 457899998877544
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=90.29 E-value=7.5 Score=30.50 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=54.9
Q ss_pred CeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc---eeee-----cCCCCEEEEEEecC---CcEEEEe-C-C------
Q psy11036 44 YVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP---VMSV-----NHGSPVESVLCLPS---GGIFVTG-G-G------ 104 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~---~~~~-----~~~~~v~~~~~~~~---~~~l~~~-~-~------ 104 (239)
..+.|+|.| +++++++ ...|.|++++ ..+.. +..+ ........++++|+ ..++.+. . .
T Consensus 3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEET-TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeC-CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 467999999 6777765 5699999999 33332 2222 24567899999994 2333332 2 1
Q ss_pred --CcEEEEEccCC-------CeEEEEEec---cCCceEEEEEcCCCCEEEEEec
Q psy11036 105 --LDVCIWDMLGG-------GKLLHKFTC---HHKTVTSLCLASGGKRLISASL 146 (239)
Q Consensus 105 --~~i~~~d~~~~-------~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~ 146 (239)
..|.-|..... ...+..+.. ....-..|.|.|||.+.++.+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23444444322 111222222 2334567999999977666554
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=90.09 E-value=13 Score=32.98 Aligned_cols=129 Identities=8% Similarity=0.087 Sum_probs=78.4
Q ss_pred cCCCCEEEEEEe---c----CCcEEEEeCCCcEEEEEcc------CC--------CeEEEEEec---cCCceEEEEEcC-
Q psy11036 82 NHGSPVESVLCL---P----SGGIFVTGGGLDVCIWDML------GG--------GKLLHKFTC---HHKTVTSLCLAS- 136 (239)
Q Consensus 82 ~~~~~v~~~~~~---~----~~~~l~~~~~~~i~~~d~~------~~--------~~~~~~~~~---~~~~i~~i~~~~- 136 (239)
....+|..|+|. . ..++|++-....+.|+... .. ..++..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 467889999988 2 2347777777777777722 00 123333432 234778999999
Q ss_pred CCCEEEEEecCCeEEEEEcc-c----ceEeeeecceeEEE-EEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc
Q psy11036 137 GGKRLISASLDHHAKIYEMT-L----KTVSSFTGGLDVCI-WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH 210 (239)
Q Consensus 137 ~~~~l~~~~~d~~i~i~d~~-~----~~~~~~~~~~~i~~-~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~ 210 (239)
+.+.||.....|...||++. . .....+.......+ +|... ...-..+.|.++...|+.++ ..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e-----------~s~w~rI~W~~~~~~lLv~~-r~ 224 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEE-----------LSNWKRILWVSDSNRLLVCN-RS 224 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcc-----------cCcceeeEecCCCCEEEEEc-CC
Confidence 45789999999999999993 1 11111111100111 22111 13455788988877777775 45
Q ss_pred eEEEEEccCCee
Q psy11036 211 HAKIYEMVNFSP 222 (239)
Q Consensus 211 ~i~iwd~~~~~~ 222 (239)
.+.++|+++...
T Consensus 225 ~l~~~d~~~~~~ 236 (765)
T PF10214_consen 225 KLMLIDFESNWQ 236 (765)
T ss_pred ceEEEECCCCCc
Confidence 788888887655
|
These proteins are found in fungi. |
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=89.33 E-value=4.7 Score=35.71 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=58.2
Q ss_pred CCeEEEEeCCCCCceee-ecCCCCEEEEEEecCCcEEEE-eC-CC-----cEEEEEccCCCeEEEEEeccCCceEEEEEc
Q psy11036 64 DKTVNVYDTRSPDPVMS-VNHGSPVESVLCLPSGGIFVT-GG-GL-----DVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 135 (239)
Q Consensus 64 dg~v~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~-~~-~~-----~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~ 135 (239)
.+.|.+-|.....+... +.+..++..-+|+|+|+.++- .+ ++ .|.+-+++..+..+.++.-.+..|..-...
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~ 407 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVL 407 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEec
Confidence 35788888876666655 678889999999999999987 43 23 388889987666666666666777777777
Q ss_pred CCCCEEE
Q psy11036 136 SGGKRLI 142 (239)
Q Consensus 136 ~~~~~l~ 142 (239)
++|...+
T Consensus 408 e~gdt~i 414 (912)
T TIGR02171 408 ENGDTVI 414 (912)
T ss_pred CCCCeEE
Confidence 7776433
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=89.10 E-value=5.4 Score=27.91 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=25.1
Q ss_pred CcEEEEEEccCC------CeEEEEcCCceEEEEEcc
Q psy11036 189 KTVTSLCLASGG------KRLISASLDHHAKIYEMV 218 (239)
Q Consensus 189 ~~v~~~~~s~~~------~~l~s~s~d~~i~iwd~~ 218 (239)
..+..++|||.| -+|++...++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 378999999943 478899999999999865
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=88.88 E-value=11 Score=30.58 Aligned_cols=176 Identities=15% Similarity=0.114 Sum_probs=98.3
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC-----------
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS----------- 74 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~----------- 74 (239)
-||.+.+++-+.....+.+... --.-.+.|.+ ..+.+++++.+..+..|....
T Consensus 153 ~DG~L~~feqe~~~f~~~lp~~---------------llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~ 216 (418)
T PF14727_consen 153 MDGSLSFFEQESFAFSRFLPDF---------------LLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQ 216 (418)
T ss_pred cCceEEEEeCCcEEEEEEcCCC---------------CCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhcccccccc
Confidence 4688888886555444444442 2223567888 678888888888898886421
Q ss_pred ---------CC---ceeeecCCCCEEEEEEe---cCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEE-EcC--
Q psy11036 75 ---------PD---PVMSVNHGSPVESVLCL---PSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLC-LAS-- 136 (239)
Q Consensus 75 ---------~~---~~~~~~~~~~v~~~~~~---~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~-~~~-- 136 (239)
++ +..++.-.+.+..+..- .....+++-+...+.+.+. .+......+ ......+++ +..
T Consensus 217 ~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~--~G~l~~~kr-Ld~~p~~~~~Y~~~~ 293 (418)
T PF14727_consen 217 SGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKD--NGSLRFQKR-LDYNPSCFCPYRVPW 293 (418)
T ss_pred ccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcC--CCeEEEEEe-cCCceeeEEEEEeec
Confidence 11 11222344555555443 3455666777777777766 454433333 233323332 211
Q ss_pred --CC---CEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcE--EEEEEccCCCeEEEEcCC
Q psy11036 137 --GG---KRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTV--TSLCLASGGKRLISASLD 209 (239)
Q Consensus 137 --~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v--~~~~~s~~~~~l~s~s~d 209 (239)
++ ..++.++.++++.||.=. -.+|.... ...+| .-..|..-...|++-+.+
T Consensus 294 ~~~~~~~~~llV~t~t~~LlVy~d~------------~L~WsA~l----------~~~PVal~v~~~~~~~G~IV~Ls~~ 351 (418)
T PF14727_consen 294 YNEPSTRLNLLVGTHTGTLLVYEDT------------TLVWSAQL----------PHVPVALSVANFNGLKGLIVSLSDE 351 (418)
T ss_pred ccCCCCceEEEEEecCCeEEEEeCC------------eEEEecCC----------CCCCEEEEecccCCCCceEEEEcCC
Confidence 22 248888999999998632 23333322 22222 222233335578888889
Q ss_pred ceEEEEEccCCee
Q psy11036 210 HHAKIYEMVNFSP 222 (239)
Q Consensus 210 ~~i~iwd~~~~~~ 222 (239)
|.+.+-=+.|.-.
T Consensus 352 G~L~v~YLGTdPs 364 (418)
T PF14727_consen 352 GQLSVSYLGTDPS 364 (418)
T ss_pred CcEEEEEeCCCCc
Confidence 9988876655433
|
|
| >KOG1898|consensus | Back alignment and domain information |
|---|
Probab=87.98 E-value=21 Score=32.48 Aligned_cols=133 Identities=18% Similarity=0.179 Sum_probs=75.5
Q ss_pred EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCC-EEEEee-----------CCCeEEEEeCC-CC
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSD-IVISGS-----------YDKTVNVYDTR-SP 75 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~-----------~dg~v~vw~~~-~~ 75 (239)
.|++.|..+++.+..+..... ...-.+..+.|+..+.. +++++. .+|.++.|++- .+
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~n----------e~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g 923 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQN----------EAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNG 923 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCC----------cchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecC
Confidence 588888888877666554431 00024556666652222 333322 23456666653 33
Q ss_pred Cceeee---cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEe--ccCCceEEEEEcCCCCEEEEEecCCeE
Q psy11036 76 DPVMSV---NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFT--CHHKTVTSLCLASGGKRLISASLDHHA 150 (239)
Q Consensus 76 ~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i 150 (239)
+.+.-+ .-.+++. +..|...++.+|-...+++||+- .+++++... .-...|+.+.+ .+..+++|...-.+
T Consensus 924 ~~lellh~T~~~~~v~--Ai~~f~~~~LagvG~~l~~YdlG-~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV 998 (1205)
T KOG1898|consen 924 DKLELLHKTEIPGPVG--AICPFQGRVLAGVGRFLRLYDLG-KKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESV 998 (1205)
T ss_pred ceeeeeeccCCCccce--EEeccCCEEEEecccEEEEeeCC-hHHHHhhhhhccCceEEEEEee--cceEEEEeeccceE
Confidence 322222 2344454 44666667877778899999996 444443332 22456677766 46678888777667
Q ss_pred EEEEcc
Q psy11036 151 KIYEMT 156 (239)
Q Consensus 151 ~i~d~~ 156 (239)
..+-.+
T Consensus 999 ~~~~y~ 1004 (1205)
T KOG1898|consen 999 HFVRYR 1004 (1205)
T ss_pred EEEEEe
Confidence 665555
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.97 E-value=11 Score=29.54 Aligned_cols=108 Identities=9% Similarity=0.011 Sum_probs=62.5
Q ss_pred CCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEe-ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEe
Q psy11036 83 HGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFT-CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVS 161 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 161 (239)
....+.++.+.|++.+++++..|.+..- .+..++...... .-...++.+.+.++++.++++ ..|.+++=..+
T Consensus 171 ~~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d----- 243 (334)
T PRK13684 171 AAGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD----- 243 (334)
T ss_pred CcceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC-----
Confidence 3457889999999888877777766532 111233232222 334678999999998876665 56765432222
Q ss_pred eeecceeEEEEEccCCCEEEEEEec----ccCcEEEEEEccCCCeEEEEcCCceEE
Q psy11036 162 SFTGGLDVCIWDMLGGGKLLHKFTC----HHKTVTSLCLASGGKRLISASLDHHAK 213 (239)
Q Consensus 162 ~~~~~~~i~~~d~~~~~~~~~~~~~----h~~~v~~~~~s~~~~~l~s~s~d~~i~ 213 (239)
.+..-..... ....+..+.+.|++..++++ .+|.+.
T Consensus 244 ---------------~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~ 283 (334)
T PRK13684 244 ---------------DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL 283 (334)
T ss_pred ---------------CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence 1111110010 12357788899887766544 567554
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=87.77 E-value=2.2 Score=21.13 Aligned_cols=32 Identities=22% Similarity=0.161 Sum_probs=19.8
Q ss_pred EeccCCceEEEEEcCCCCEEEEEec-C--CeEEEE
Q psy11036 122 FTCHHKTVTSLCLASGGKRLISASL-D--HHAKIY 153 (239)
Q Consensus 122 ~~~~~~~i~~i~~~~~~~~l~~~~~-d--~~i~i~ 153 (239)
+......-....|+|||+.|+-++. + |...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3334556778999999998876654 3 444443
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=87.59 E-value=21 Score=32.16 Aligned_cols=149 Identities=10% Similarity=0.066 Sum_probs=79.3
Q ss_pred EEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccC
Q psy11036 48 GTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHH 126 (239)
Q Consensus 48 ~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~ 126 (239)
+..+...++.|+-... ..||+++-. .....+..++.++....+.+...++.++ ++.+...++...+-....-+...
T Consensus 454 if~S~i~g~~lvQvTs-~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e 530 (1096)
T KOG1897|consen 454 IFCSTINGNQLVQVTS-NSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFE 530 (1096)
T ss_pred EEEEccCCceEEEEec-ccEEEEcch--hhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheec
Confidence 3333333444433333 346776644 2333344555566665565665666666 57777777763331111122335
Q ss_pred CceEEEEEcCCC------CEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEec--ccCcEEEEEEc
Q psy11036 127 KTVTSLCLASGG------KRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTC--HHKTVTSLCLA 197 (239)
Q Consensus 127 ~~i~~i~~~~~~------~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--h~~~v~~~~~s 197 (239)
..|.|+.++|-| +.++.|..+..+.+.-.. ...+ .....+.+ -...|.-.++-
T Consensus 531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~------------------~~~~~l~~~~iPRSIl~~~~e 592 (1096)
T KOG1897|consen 531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL------------------ITHEQLSGEIIPRSILLTTFE 592 (1096)
T ss_pred ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce------------------eeeeccCCCccchheeeEEee
Confidence 688999998743 267788776665543322 0000 00000111 12234455666
Q ss_pred cCCCeEEEEcCCceEEEEEc
Q psy11036 198 SGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 198 ~~~~~l~s~s~d~~i~iwd~ 217 (239)
-|..+|.++..||.+.-|-+
T Consensus 593 ~d~~yLlvalgdG~l~~fv~ 612 (1096)
T KOG1897|consen 593 GDIHYLLVALGDGALLYFVL 612 (1096)
T ss_pred ccceEEEEEcCCceEEEEEE
Confidence 67889999999999876644
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=87.41 E-value=14 Score=29.90 Aligned_cols=105 Identities=10% Similarity=0.005 Sum_probs=66.1
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc-----eeeec---CCCCEEEEEEecCCcEEEEeCCCcEEEEEccC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP-----VMSVN---HGSPVESVLCLPSGGIFVTGGGLDVCIWDMLG 114 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~-----~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~ 114 (239)
..++.+.+.+ ++.+++++ .+|.+. +....++. ..... ....+..+.+.+++..+++|..|.+....-
T Consensus 281 ~~l~~v~~~~-dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D-- 355 (398)
T PLN00033 281 RRIQNMGWRA-DGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTD-- 355 (398)
T ss_pred cceeeeeEcC-CCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--
Confidence 5688999988 67776655 556653 34444431 22222 223589999999999888888887766532
Q ss_pred CCeEEEEEe---ccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy11036 115 GGKLLHKFT---CHHKTVTSLCLASGGKRLISASLDHHAKIY 153 (239)
Q Consensus 115 ~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 153 (239)
.++...... .-......+.|.++++.+++| .+|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 444444333 234568899987776666555 67766443
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=87.13 E-value=17 Score=30.48 Aligned_cols=193 Identities=12% Similarity=0.085 Sum_probs=85.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCC--eEEEEeCCCCCceeeecCCCCEEEEEEecC----C-------cEEEEeC---CCc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDK--TVNVYDTRSPDPVMSVNHGSPVESVLCLPS----G-------GIFVTGG---GLD 106 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg--~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~----~-------~~l~~~~---~~~ 106 (239)
....++.+...++.+++.|+.-| .+.-+....-+.+..+..-+||..++.-+. . +.+++++ +|.
T Consensus 256 ~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gs 335 (504)
T PF10433_consen 256 SIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGS 335 (504)
T ss_dssp S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-E
T ss_pred ChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCc
Confidence 44556777652224777777655 444455344445556677889999988632 1 3445444 478
Q ss_pred EEEEEccCCCe-EEEEEeccCC--ceEEEEEcC-CCCEEEEEecCCeEEEEEcc----cceEee-----e----------
Q psy11036 107 VCIWDMLGGGK-LLHKFTCHHK--TVTSLCLAS-GGKRLISASLDHHAKIYEMT----LKTVSS-----F---------- 163 (239)
Q Consensus 107 i~~~d~~~~~~-~~~~~~~~~~--~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~----~~~~~~-----~---------- 163 (239)
+++..---.-+ .........+ .+..+.... +..+|+....+ .-+++.+. .+.+.. +
T Consensus 336 L~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~ 414 (504)
T PF10433_consen 336 LRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAG 414 (504)
T ss_dssp EEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEE
T ss_pred EEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEE
Confidence 88874321111 0111111222 233333222 13455555443 33444442 222211 1
Q ss_pred -e--------cceeEEEEEccCCCEEEEEEe-cccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec------
Q psy11036 164 -T--------GGLDVCIWDMLGGGKLLHKFT-CHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD------ 227 (239)
Q Consensus 164 -~--------~~~~i~~~d~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~------ 227 (239)
. ....|++.+.... +...... .....|.+.+.. +.+++.+-.++.+..+.+..........
T Consensus 415 ~~~~~~ivQVt~~~i~l~~~~~~-~~~~~w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (504)
T PF10433_consen 415 NVGDGRIVQVTPKGIRLIDLEDG-KLTQEWKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILE 491 (504)
T ss_dssp EETTTEEEEEESSEEEEEESSST-SEEEEEE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE
T ss_pred EcCCCeEEEEecCeEEEEECCCC-eEEEEEeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeecccccc
Confidence 0 1122555554432 2222221 223445555443 4456666668889999987776643322
Q ss_pred CCCCeeeeEecC
Q psy11036 228 YPSPVLSIDVSM 239 (239)
Q Consensus 228 ~~~~v~~~~~sp 239 (239)
....|.++..+|
T Consensus 492 ~~~eis~l~i~p 503 (504)
T PF10433_consen 492 LDNEISCLSIEP 503 (504)
T ss_dssp -SS-EEEEE---
T ss_pred CCCceEEEEeCC
Confidence 578899998877
|
... |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.03 E-value=16 Score=30.33 Aligned_cols=100 Identities=10% Similarity=0.036 Sum_probs=48.6
Q ss_pred CCCEEEEeeCCC-----eEEEEeCCCCCceeee--cCCCCEEEEEEecCCcEEEEeC-C--CcEEEEEccCCCeEEEEEe
Q psy11036 54 SSDIVISGSYDK-----TVNVYDTRSPDPVMSV--NHGSPVESVLCLPSGGIFVTGG-G--LDVCIWDMLGGGKLLHKFT 123 (239)
Q Consensus 54 ~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~--~~i~~~d~~~~~~~~~~~~ 123 (239)
++.+++.|+.++ .+..||..+++....- .....-.+++ .-++...++|+ + ..+..||.. ..+ ...+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~-~n~-W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHG-DAA-WVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECC-CCe-EEECC
Confidence 556777887653 5677888776533221 1111111222 23677777777 2 457888875 322 22222
Q ss_pred ccCCceEE-EEEcCCCCEEEEEecCC---eEEEEEcc
Q psy11036 124 CHHKTVTS-LCLASGGKRLISASLDH---HAKIYEMT 156 (239)
Q Consensus 124 ~~~~~i~~-i~~~~~~~~l~~~~~d~---~i~i~d~~ 156 (239)
.-..+... ....-+|+..+.||.++ .+..||.+
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCC
Confidence 11111111 11122567777777553 24455544
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=86.60 E-value=2.3 Score=35.90 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=28.0
Q ss_pred CCeEEEEEec---CCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 43 DYVRAGTVSP---VSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 43 ~~v~~~~~~~---~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
..+..++.++ .+..++++-+.|+++|+||+.+++++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455555554 25679999999999999999999985544
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=85.80 E-value=2.4 Score=19.44 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=19.0
Q ss_pred EEEEEEccCCCeEEEEcCCceEEEE
Q psy11036 191 VTSLCLASGGKRLISASLDHHAKIY 215 (239)
Q Consensus 191 v~~~~~s~~~~~l~s~s~d~~i~iw 215 (239)
...++++++|+++++=+..+.|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567888888888887777777765
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=85.71 E-value=15 Score=28.71 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=38.6
Q ss_pred eEEEEEcCCCCEEEEEecC------CeEEEEEcccceEeeeecceeEEEEEccCCCEEEE---EEecccCcEEEEEEccC
Q psy11036 129 VTSLCLASGGKRLISASLD------HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLH---KFTCHHKTVTSLCLASG 199 (239)
Q Consensus 129 i~~i~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~~h~~~v~~~~~s~~ 199 (239)
.-+|++.++|.++++.-.+ ..|.-++.+++.+..+. +.....+.. .-...+....+|+++|+
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~---------vP~~~~~~~~~~~~~~~N~G~E~la~~~d 157 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFP---------VPAAFLPDANGTSGRRNNRGFEGLAVSPD 157 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEc---------cccccccccCccccccCCCCeEEEEECCC
Confidence 3467776677776666555 66766666544333330 000000000 11224567899999999
Q ss_pred CCeEEEEc
Q psy11036 200 GKRLISAS 207 (239)
Q Consensus 200 ~~~l~s~s 207 (239)
|+.|+++.
T Consensus 158 G~~l~~~~ 165 (326)
T PF13449_consen 158 GRTLFAAM 165 (326)
T ss_pred CCEEEEEE
Confidence 99666553
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=84.87 E-value=21 Score=29.67 Aligned_cols=161 Identities=15% Similarity=0.128 Sum_probs=75.4
Q ss_pred CCCeEEEEeCCCCCceeeecCCC-CEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCC---ceEEEEEcCCC
Q psy11036 63 YDKTVNVYDTRSPDPVMSVNHGS-PVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHK---TVTSLCLASGG 138 (239)
Q Consensus 63 ~dg~v~vw~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~i~~i~~~~~~ 138 (239)
..+...+.|.. |..+..+.... ....+...++|.+++... ..+..+|+. ++.+........ .=..+...|+|
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~--G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLL--GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCC--CCEEEeeecCCcccccccccEECCCC
Confidence 44566667753 54444442111 111166778888887555 778888884 555554442221 13557788999
Q ss_pred CEEEEEecCCeEEE-EE--cccceEeee-ecceeEEEEEccCCCEEEEE----------E---eccc--CcEEEEEEcc-
Q psy11036 139 KRLISASLDHHAKI-YE--MTLKTVSSF-TGGLDVCIWDMLGGGKLLHK----------F---TCHH--KTVTSLCLAS- 198 (239)
Q Consensus 139 ~~l~~~~~d~~i~i-~d--~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~----------~---~~h~--~~v~~~~~s~- 198 (239)
++|+.+.......- =+ .-...+..+ ..+.-+..||+..--.+... . .... --+.++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred CEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 99888873221110 00 001222222 12333666776542211111 0 0000 1378889988
Q ss_pred CCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 199 GGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 199 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
++.+|+|+-.-..|...|.++++....+.
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred CCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 66666766666688888988888877765
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=84.78 E-value=25 Score=30.41 Aligned_cols=173 Identities=12% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCCeEEEEEecCCCCEEEEeeCCCeEEEEeC----------CCCCceeeecCCCCEEEEEEecCCcEEEEeCC-----Cc
Q psy11036 42 QDYVRAGTVSPVSSDIVISGSYDKTVNVYDT----------RSPDPVMSVNHGSPVESVLCLPSGGIFVTGGG-----LD 106 (239)
Q Consensus 42 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~~ 106 (239)
++.|..+.+.+ ++..+++...+|.|.+||. -.........+..-|..........++++.++ -.
T Consensus 129 ~~kvv~Ik~~~-~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSS-DGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEec-CCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Q ss_pred EEEEEccCCCeEEEEEe---ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEE
Q psy11036 107 VCIWDMLGGGKLLHKFT---CHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLH 182 (239)
Q Consensus 107 i~~~d~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~ 182 (239)
.+++.+......+..+. .+........|.-+...|.-- .++.|.+|++. .+...++ ....
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI---------------~l~~ 271 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTI---------------SLPS 271 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEE---------------Eech
Q ss_pred EEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCCee
Q psy11036 183 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVL 233 (239)
Q Consensus 183 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~ 233 (239)
.+......+.++.--..++.|++. +..|++.|+.-...+.++....+..
T Consensus 272 ii~~~~~~~vSl~~~s~nRvLLs~--~nkIyLld~~~~siLse~~~s~~~~ 320 (670)
T PF10395_consen 272 IIDKESDDLVSLKPPSPNRVLLSV--NNKIYLLDLKFESILSEFELSHPKP 320 (670)
T ss_pred hhccccccceEeecCCCCeEEEEc--CCEEEEEeehhhhhhhhhhccCCcc
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=84.49 E-value=13 Score=33.28 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=33.5
Q ss_pred CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEE-EecCC-----eEEEEEcc
Q psy11036 105 LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLIS-ASLDH-----HAKIYEMT 156 (239)
Q Consensus 105 ~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~-----~i~i~d~~ 156 (239)
+.+.+-|.. ...+...-..+..+|..-.|+|||+.|+- .+.++ .|++-+++
T Consensus 329 ~~L~~~D~d-G~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~ 385 (912)
T TIGR02171 329 GNLAYIDYT-KGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLN 385 (912)
T ss_pred CeEEEEecC-CCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehh
Confidence 578888886 32322221346889999999999999987 44443 35555554
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG1896|consensus | Back alignment and domain information |
|---|
Probab=83.55 E-value=38 Score=31.47 Aligned_cols=117 Identities=12% Similarity=0.114 Sum_probs=64.8
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
++|..++=. .|.++.+ ....|.+|++.....+.-+. ..-++.-....--.++++.|. -..|.+.-.......+.
T Consensus 1098 GtVsavceV--~G~l~~~--~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rls 1173 (1366)
T KOG1896|consen 1098 GTVSAVCEV--RGHLLSS--QGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLS 1173 (1366)
T ss_pred cceEEEEEe--ccEEEEc--cCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEE
Confidence 778777755 3544443 33579999994443222111 111222222222244555555 35566655543344444
Q ss_pred EEeccC--CceEEEEEcCCCC--EEEEEecCCeEEEEEcccceEeee
Q psy11036 121 KFTCHH--KTVTSLCLASGGK--RLISASLDHHAKIYEMTLKTVSSF 163 (239)
Q Consensus 121 ~~~~~~--~~i~~i~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~ 163 (239)
.+.... -.+.++.|--+|. .++++..++.|+++-...+...++
T Consensus 1174 L~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~eS~ 1220 (1366)
T KOG1896|consen 1174 LLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPENIESL 1220 (1366)
T ss_pred EeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCcccc
Confidence 333222 2567778877764 688888999999998775555555
|
|
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=82.77 E-value=0.25 Score=39.90 Aligned_cols=107 Identities=9% Similarity=0.054 Sum_probs=71.5
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee-eecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM-SVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
+....++|..+....++.+-..+.+.+|++.+..... .++....-.-+.|++.+..++.+. .+.+.+++.. ..+.+-
T Consensus 75 g~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhg-tsR~ii 153 (615)
T KOG2247|consen 75 GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHG-TSRRII 153 (615)
T ss_pred hhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEecc-chhhhh
Confidence 5566788888444556667778999999997543211 112111112278899888888888 6999999987 444444
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEE
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAK 151 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 151 (239)
.+..|...++++++.+.+. .+.++.|..+.
T Consensus 154 v~Gkh~RRgtq~av~lEd~-vil~dcd~~L~ 183 (615)
T KOG2247|consen 154 VMGKHQRRGTQIAVTLEDY-VILCDCDNTLS 183 (615)
T ss_pred hhcccccceeEEEecccce-eeecCcHHHHH
Confidence 4445888999999998754 45555554433
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.66 E-value=16 Score=26.56 Aligned_cols=99 Identities=16% Similarity=0.039 Sum_probs=54.4
Q ss_pred CCCEEEEeeCC--CeEEEEeCCCCCceeeecCC-CCEEEEEEecCCc--EEEEeCCCcEEEEEccCCCeEEEEEeccCCc
Q psy11036 54 SSDIVISGSYD--KTVNVYDTRSPDPVMSVNHG-SPVESVLCLPSGG--IFVTGGGLDVCIWDMLGGGKLLHKFTCHHKT 128 (239)
Q Consensus 54 ~~~~l~s~~~d--g~v~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~--~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 128 (239)
+++++.+.+.- ..|++||+.+++.+...... ..+..=-...-+. +..+-.++.-..+|.+ +.+.+..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~-t~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDAD-TLEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChH-Hhhhhcccc-cCCc
Confidence 45677776643 47999999999877654322 1221111111133 3333347777888887 555555544 2333
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 129 VTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 129 i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
=..++ .|+..|+.+....+++.-|.+
T Consensus 133 GWgLt--~d~~~LimsdGsatL~frdP~ 158 (262)
T COG3823 133 GWGLT--SDDKNLIMSDGSATLQFRDPK 158 (262)
T ss_pred ceeee--cCCcceEeeCCceEEEecCHH
Confidence 34443 356556666555556555554
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=81.88 E-value=28 Score=28.76 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=37.2
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCC-eEEEEE----e-ccCCceEEEEEcCCC
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGG-KLLHKF----T-CHHKTVTSLCLASGG 138 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~-~~~~~~----~-~~~~~i~~i~~~~~~ 138 (239)
-.....|+|.|+++++++-. .|.|++++..... ..+..+ . ...+....|+++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34568899999999888887 5999998764211 122111 1 135678999999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG3522|consensus | Back alignment and domain information |
|---|
Probab=81.18 E-value=11 Score=33.21 Aligned_cols=145 Identities=14% Similarity=0.156 Sum_probs=82.1
Q ss_pred CEEEEeeCCCeEEEEeCCCCCc-eeee----cCCCCEEEEEEecCCcEEEEeC-CCcEEE--------EEccCCCeEEEE
Q psy11036 56 DIVISGSYDKTVNVYDTRSPDP-VMSV----NHGSPVESVLCLPSGGIFVTGG-GLDVCI--------WDMLGGGKLLHK 121 (239)
Q Consensus 56 ~~l~s~~~dg~v~vw~~~~~~~-~~~~----~~~~~v~~~~~~~~~~~l~~~~-~~~i~~--------~d~~~~~~~~~~ 121 (239)
..+..|+.++.+.++.-..+.. .... .....+.++.+++. .+..|. ||++-. ||.+ +-..
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~e----p~~~ 621 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGE----PNIS 621 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCC----Cccc
Confidence 3567788888888887652221 1111 23445566665542 122121 333332 5543 2223
Q ss_pred EeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC
Q psy11036 122 FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK 201 (239)
Q Consensus 122 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 201 (239)
+.....++...++..| ++.++.+|.|.++.... .+..|+.+ ....|...|+++.+..++-
T Consensus 622 ~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt----------~~~~~~le-------ahqee~~~Vthm~~~~~gV 681 (925)
T KOG3522|consen 622 IPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTT----------FIRSWDLE-------AHQEEAHSVTHMLYLDNGV 681 (925)
T ss_pred cccCCccccchhhhhc---eeeeecCCceEEEechh----------ccccchhH-------HHHhhcceEEEEEeeCCce
Confidence 3334567888887654 66778899999998760 01112211 1134567899999987777
Q ss_pred eEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 202 RLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 202 ~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
+++-++.| .++.++.++..-++.++
T Consensus 682 wvafasG~-~~rlfhtetl~hlqd~n 706 (925)
T KOG3522|consen 682 WVAFASGD-EERLFHTETLWHLQDSN 706 (925)
T ss_pred EEEEcCCC-EEEEecccccCCccccc
Confidence 77766665 45555766655555544
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=80.65 E-value=25 Score=27.50 Aligned_cols=103 Identities=14% Similarity=0.263 Sum_probs=62.3
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCe------EEEEeCCC--C--Ccee-----ee-cCCC--------CEEEEEEecCCcE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKT------VNVYDTRS--P--DPVM-----SV-NHGS--------PVESVLCLPSGGI 98 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~------v~vw~~~~--~--~~~~-----~~-~~~~--------~v~~~~~~~~~~~ 98 (239)
+.+..+.+.+ ++..+++-+.+|. +...++.. + ..+. .+ ...+ ...++++.+++.+
T Consensus 20 GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 7788999997 4556666677777 55555443 1 1111 11 1111 3457888777777
Q ss_pred EEEeC-C------CcEEEEEccCCCeEEEEEe---------------ccCCceEEEEEcCCCCEEEEEecCC
Q psy11036 99 FVTGG-G------LDVCIWDMLGGGKLLHKFT---------------CHHKTVTSLCLASGGKRLISASLDH 148 (239)
Q Consensus 99 l~~~~-~------~~i~~~d~~~~~~~~~~~~---------------~~~~~i~~i~~~~~~~~l~~~~~d~ 148 (239)
+++.. + ..|..++.. ++....+. ..+....+++++|+|+.|+++.+..
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcc
Confidence 77665 5 567777754 44333331 1345788999999999777765543
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.05 E-value=17 Score=29.76 Aligned_cols=71 Identities=8% Similarity=-0.033 Sum_probs=49.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLG 114 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~ 114 (239)
.++.-+.-.. +.+-+++-+..|++.++.....+....-..-....-++++|++.++++-..|.++++.+++
T Consensus 317 a~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~N 387 (733)
T COG4590 317 AEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLEN 387 (733)
T ss_pred ccceeecccc-ccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeecCCceEEEEecC
Confidence 3444443333 4556777788899988876554443322333466778999999999988889999999873
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 239 | ||||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 9e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-06 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-06 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-06 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-06 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-06 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-06 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-06 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-06 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-06 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-06 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-06 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-06 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-06 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-06 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-06 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-06 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-06 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 4e-06 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 5e-06 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-05 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-05 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 7e-05 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-04 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 2e-04 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 6e-04 |
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 239 | |||
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.98 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.98 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.98 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.98 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.98 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.98 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.94 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.94 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.93 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.91 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.91 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.9 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.9 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.89 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.89 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.87 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.87 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.86 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.86 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.86 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.86 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.83 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.83 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.82 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.82 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.81 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.8 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.78 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.78 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.76 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.74 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.74 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.73 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.73 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.72 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.72 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.71 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.71 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.7 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.7 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.7 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.7 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.69 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.68 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.68 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.68 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.65 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.64 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.64 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.64 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.63 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.62 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.62 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.61 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.61 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.61 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.58 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.58 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.58 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.58 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.57 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.56 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.51 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.5 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.5 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.49 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.48 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.48 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.48 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.46 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.45 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.45 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.44 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.39 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.39 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.39 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.37 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.36 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.34 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.32 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.31 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.3 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.28 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.27 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.25 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.24 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.24 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.23 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.22 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.22 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.21 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.18 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.18 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.18 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.15 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.13 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.13 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.1 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.08 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.08 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.07 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.06 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.05 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.04 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.02 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.01 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.98 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.96 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.93 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.92 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.92 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.86 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.86 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.83 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.78 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.77 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.77 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.76 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.76 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.74 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.74 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.65 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.62 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.61 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.58 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.57 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.57 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.5 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.5 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.47 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.46 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.45 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.44 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.41 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.38 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.37 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.36 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.33 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.33 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.32 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.29 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.26 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 98.2 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.18 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.17 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.16 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.14 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.14 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.12 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.11 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.09 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.05 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.05 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.04 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.99 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.93 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.87 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.87 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.86 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.83 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.82 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.79 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.72 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.66 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.57 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.49 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.47 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.45 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.43 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.31 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.13 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.12 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.85 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.79 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.75 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.73 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.68 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.65 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.64 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.63 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.6 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.59 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.51 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.38 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.38 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.25 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.25 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.21 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.12 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.09 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.06 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.98 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.96 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 95.89 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.59 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.39 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.99 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.39 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 94.2 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 93.8 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 93.73 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 93.59 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 93.52 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.35 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 93.08 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 92.71 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 92.54 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 91.7 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 91.2 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 91.07 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.48 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 90.15 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 89.72 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.57 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 85.35 | |
| 3f7f_A | 729 | Nucleoporin NUP120; nuclear pore complex, macromol | 85.13 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 84.69 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 84.37 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 84.05 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 82.5 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 80.75 |
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=264.51 Aligned_cols=218 Identities=20% Similarity=0.290 Sum_probs=196.3
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHG 84 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~ 84 (239)
.||.|++||+++++.+..+..|. .+|.+++|+| ++++|++|+.|++|++||+.+++.+..+ .|.
T Consensus 33 ~dg~v~lWd~~~~~~~~~~~~~~--------------~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~ 97 (304)
T 2ynn_A 33 YSGRVELWNYETQVEVRSIQVTE--------------TPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP 97 (304)
T ss_dssp TTSEEEEEETTTTEEEEEEECCS--------------SCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred CCCcEEEEECCCCceeEEeeccC--------------CcEEEEEEeC-CCCEEEEECCCCEEEEEECCCCcEEEEEeCCC
Confidence 58999999999999999999998 9999999999 8999999999999999999999988888 699
Q ss_pred CCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEEcc-cceEe
Q psy11036 85 SPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMT-LKTVS 161 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~ 161 (239)
..|.+++|+|+++++++++ |+.|++||++........+.+|...|.+++|+| ++..|++|+.|+.|++||++ .....
T Consensus 98 ~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~ 177 (304)
T 2ynn_A 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE
T ss_pred CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence 9999999999999999998 899999999855577788899999999999999 67899999999999999985 22111
Q ss_pred -------------------------eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEE
Q psy11036 162 -------------------------SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 162 -------------------------~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
+...++.|++||+++ .+++..+.+|...|.+++|+|++++|++|+.||.|++||
T Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp EEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred eeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC-CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 112345699999987 788899999999999999999999999999999999999
Q ss_pred ccCCeeeEEec-CCCCeeeeEecC
Q psy11036 217 MVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 217 ~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
+.+++.++.+. +...+.+++|+|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 257 SSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp TTTCCEEEEECCSSSSEEEEEECT
T ss_pred CCCCceeeeccCCCccEEEEEECC
Confidence 99999999998 677999999876
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-41 Score=265.78 Aligned_cols=218 Identities=22% Similarity=0.348 Sum_probs=199.4
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
+.||.|+|||+.+++...++.+|. +.|.+++|+| ++++|++|+.|++|++||+.+++++..+ .|
T Consensus 127 s~Dg~i~vwd~~~~~~~~~l~~h~--------------~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h 191 (410)
T 1vyh_C 127 SEDATIKVWDYETGDFERTLKGHT--------------DSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMHGH 191 (410)
T ss_dssp ESSSCEEEEETTTCCCCEEECCCS--------------SCEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEEECCCCC
T ss_pred eCCCeEEEEECCCCcEEEEEeccC--------------CcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCC
Confidence 468999999999999999999999 9999999999 7899999999999999999999888887 69
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEe
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVS 161 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~ 161 (239)
...|.+++|+|++.++++++ |+.|++||++ .+..+..+.+|...|.++.++|++.+|++++.|+.|++||++ .+...
T Consensus 192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~ 270 (410)
T 1vyh_C 192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 270 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence 99999999999999999988 8999999999 788889999999999999999999999999999999999987 43332
Q ss_pred ee------------------------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC
Q psy11036 162 SF------------------------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG 199 (239)
Q Consensus 162 ~~------------------------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~ 199 (239)
.+ ..++.|++||+++ +.++..+.+|...|.+++|+|+
T Consensus 271 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~ 349 (410)
T 1vyh_C 271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSG 349 (410)
T ss_dssp EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSS
T ss_pred EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCcEEEEEEcCC
Confidence 22 2245599999987 6788899999999999999999
Q ss_pred CCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 200 GKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 200 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
+++|++|+.|+.|++||+.+++++..+. |...|++++|+|
T Consensus 350 g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 390 (410)
T 1vyh_C 350 GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 390 (410)
T ss_dssp SSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS
T ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcC
Confidence 9999999999999999999999999988 888999999987
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-40 Score=250.65 Aligned_cols=200 Identities=23% Similarity=0.329 Sum_probs=186.6
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N 82 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~ 82 (239)
.+.|+.|++||+.+++.+..+..+. ..+.+++|+| ++++|++++.||.|++|++++++....+ .
T Consensus 98 ~s~D~~i~lWd~~~~~~~~~~~~~~--------------~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~ 162 (321)
T 3ow8_A 98 SSLDAHIRLWDLENGKQIKSIDAGP--------------VDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDT 162 (321)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCT--------------TCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEEC
T ss_pred EeCCCcEEEEECCCCCEEEEEeCCC--------------ccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecC
Confidence 3578999999999999999999888 8899999999 8999999999999999999999888777 5
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEe
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVS 161 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 161 (239)
+...+.+++|+|+++++++++ |+.|++||++ .++.+..+.+|..+|.+++|+|++++|++++.|+.|++||++
T Consensus 163 ~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~----- 236 (321)
T 3ow8_A 163 RGKFILSIAYSPDGKYLASGAIDGIINIFDIA-TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ----- 236 (321)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETT-----
T ss_pred CCceEEEEEECCCCCEEEEEcCCCeEEEEECC-CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECC-----
Confidence 788899999999999999998 8999999998 888999999999999999999999999999999999999988
Q ss_pred eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 162 SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 162 ~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
..+....+.+|...|.+++|+|++++|++++.|+.|++||+.+++++.++. |...|.+++|+|
T Consensus 237 ---------------~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 237 ---------------HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG 300 (321)
T ss_dssp ---------------TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred ---------------CcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC
Confidence 456667778999999999999999999999999999999999999999987 888999999987
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=252.02 Aligned_cols=199 Identities=18% Similarity=0.179 Sum_probs=172.0
Q ss_pred CCCCEEEEeeCCCcceeee----eeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee
Q psy11036 5 LPILIVALWDIPSEAQVST----FTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS 80 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 80 (239)
+.||.|+|||+++++.+.. +.+|. +.|++++|+| ++++|++|+.|++|++||+++++++..
T Consensus 100 s~dg~v~lWd~~~~~~~~~~~~~~~~H~--------------~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~ 164 (344)
T 4gqb_B 100 SDSGAVELWELDENETLIVSKFCKYEHD--------------DIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSS 164 (344)
T ss_dssp ETTSEEEEEEECTTSSCEEEEEEEECCS--------------SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ECCCEEEEEeccCCCceeEeeccccCCC--------------CCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 5689999999998876544 34787 9999999999 899999999999999999999999888
Q ss_pred e-cCCCCEEEEEEecCCc-EEEEeC-CCcEEEEEccCCCeEEEEEe--ccCCceEEEEEcCC-CCEEEEEecCCeEEEEE
Q psy11036 81 V-NHGSPVESVLCLPSGG-IFVTGG-GLDVCIWDMLGGGKLLHKFT--CHHKTVTSLCLASG-GKRLISASLDHHAKIYE 154 (239)
Q Consensus 81 ~-~~~~~v~~~~~~~~~~-~l~~~~-~~~i~~~d~~~~~~~~~~~~--~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d 154 (239)
+ .|...|.+++|+|++. ++++++ |+.|++||++ .++....+. .+...+.+++|+|+ +++|++|+.|+.|++||
T Consensus 165 ~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 165 YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR-CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT-SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred EcCcCCceEEEEecCCCCCceeeecccccccccccc-ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 8 6999999999999875 677777 8999999998 666666653 45667999999995 56889999999999999
Q ss_pred cccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC-CeEEEEcCCceEEEEEccCCeeeEEecCCCCee
Q psy11036 155 MTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMVNFSPVHTLDYPSPVL 233 (239)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~ 233 (239)
++ ..+++..+.+|...|.+++|+|++ ++|++|+.|++|+|||+.+++.+....|.+.|+
T Consensus 244 ~~--------------------~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~ 303 (344)
T 4gqb_B 244 TK--------------------STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVR 303 (344)
T ss_dssp SC--------------------C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEE
T ss_pred CC--------------------CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEE
Confidence 88 466777789999999999999997 589999999999999999998877666999999
Q ss_pred eeEecC
Q psy11036 234 SIDVSM 239 (239)
Q Consensus 234 ~~~~sp 239 (239)
+++|||
T Consensus 304 ~v~~sp 309 (344)
T 4gqb_B 304 DATWSP 309 (344)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 999997
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-39 Score=249.61 Aligned_cols=215 Identities=15% Similarity=0.186 Sum_probs=174.5
Q ss_pred CCEEEEeeCCCcceeee----eeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee--
Q psy11036 7 ILIVALWDIPSEAQVST----FTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS-- 80 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~-- 80 (239)
|+.|++|+..++.+... ...|. ..|++++|+| ++ .+++++.||+|++||+.+++....
T Consensus 69 d~~v~~~~~~~~~~~~~~~~~~~~~~--------------~~V~~~~~s~-d~-~~l~~s~dg~v~lWd~~~~~~~~~~~ 132 (357)
T 4g56_B 69 GGSIWVFKDPEGAPNESLCTAGVQTE--------------AGVTDVAWVS-EK-GILVASDSGAVELWEILEKESLLVNK 132 (357)
T ss_dssp CEEEEEESSCC---CGGGCSEEEECS--------------SCEEEEEEET-TT-EEEEEETTSCEEEC--------CCCC
T ss_pred cCeEEEEECCCCCcceeEecccCCCC--------------CCEEEEEEcC-CC-CEEEEECCCEEEEeeccccceeEEEe
Confidence 68899999887765433 34565 8899999999 55 456788899999999988765432
Q ss_pred ---ecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCC-EEEEEecCCeEEEEEc
Q psy11036 81 ---VNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISASLDHHAKIYEM 155 (239)
Q Consensus 81 ---~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~ 155 (239)
..|...|.+++|+|++++|++++ |+.|++||++ .++.+..+.+|...|.+++|+|++. .+++++.|+.|++||+
T Consensus 133 ~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~-~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~ 211 (357)
T 4g56_B 133 FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS-QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT 211 (357)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCT
T ss_pred eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEEC
Confidence 25889999999999999999988 8999999998 8899999999999999999999875 7899999999999998
Q ss_pred c-cceEeee-------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC-CeEEEEcC
Q psy11036 156 T-LKTVSSF-------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASL 208 (239)
Q Consensus 156 ~-~~~~~~~-------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~ 208 (239)
+ ++....+ ..++.|++||+++ .+++..+.+|...|.+++|+|++ ++|++|+.
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSAQTSAVHSQNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-GGGCEEECCCSSCEEEEEECSSSSCCEEEEET
T ss_pred CCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC-CcEeEEEeccceeEEEEEEcCCCCCEEEEEeC
Confidence 7 3322211 1234599999987 66778889999999999999987 68999999
Q ss_pred CceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 209 DHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 209 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
|++|+|||+++++.+..+.|.+.|++++|||
T Consensus 291 D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP 321 (357)
T 4g56_B 291 DCTVAVLDADFSEVFRDLSHRDFVTGVAWSP 321 (357)
T ss_dssp TSCEEEECTTSCEEEEECCCSSCEEEEEECS
T ss_pred CCEEEEEECCCCcEeEECCCCCCEEEEEEeC
Confidence 9999999999999999888999999999997
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=238.60 Aligned_cols=218 Identities=18% Similarity=0.325 Sum_probs=188.6
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC----ceee
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD----PVMS 80 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~----~~~~ 80 (239)
+.||.|++||+.+++.+..+..|. ..|.+++|+| ++++|++|+.|+.+++|++.+.+ ....
T Consensus 74 s~Dg~v~iWd~~~~~~~~~~~~~~--------------~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~ 138 (340)
T 1got_B 74 SQDGKLIIWDSYTTNKVHAIPLRS--------------SWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRE 138 (340)
T ss_dssp ETTTEEEEEETTTCCEEEEEECSS--------------SCEEEEEECT-TSSEEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred eCCCcEEEEECCCCCcceEeecCC--------------ccEEEEEECC-CCCEEEEEeCCCeEEEEECccCCCcceeEEE
Confidence 568999999999999999999998 9999999999 89999999999999999998764 2233
Q ss_pred e-cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cc
Q psy11036 81 V-NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LK 158 (239)
Q Consensus 81 ~-~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~ 158 (239)
+ .|...+.++.|++++.++.++.|+.|++||++ .++.+..+.+|...|.+++|+|+++++++++.|+.|++||++ +.
T Consensus 139 ~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~ 217 (340)
T 1got_B 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE-TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217 (340)
T ss_dssp EECCSSCEEEEEEEETTEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred ecCCCccEEEEEECCCCcEEEEECCCcEEEEECC-CCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe
Confidence 3 68999999999998875555559999999998 888899999999999999999999999999999999999998 55
Q ss_pred eEeee----------------------ecceeEEEEEccCCCEEEEEEec--ccCcEEEEEEccCCCeEEEEcCCceEEE
Q psy11036 159 TVSSF----------------------TGGLDVCIWDMLGGGKLLHKFTC--HHKTVTSLCLASGGKRLISASLDHHAKI 214 (239)
Q Consensus 159 ~~~~~----------------------~~~~~i~~~d~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~d~~i~i 214 (239)
.+..+ ..++.+++||++. .+.+..+.. +...|.+++|+|++++|++|+.|+.|++
T Consensus 218 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~v 296 (340)
T 1got_B 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC-CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEE
Confidence 54444 2245599999987 444444432 3357999999999999999999999999
Q ss_pred EEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 215 YEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 215 wd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
||+.+++.+..+. |.++|.+++|+|
T Consensus 297 wd~~~~~~~~~~~~h~~~v~~~~~s~ 322 (340)
T 1got_B 297 WDALKADRAGVLAGHDNRVSCLGVTD 322 (340)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECT
T ss_pred EEcccCcEeeEeecCCCcEEEEEEcC
Confidence 9999999998887 889999999987
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-38 Score=240.35 Aligned_cols=199 Identities=20% Similarity=0.330 Sum_probs=181.1
Q ss_pred CCCCCEEEEeeCCC-----cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce
Q psy11036 4 DLPILIVALWDIPS-----EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV 78 (239)
Q Consensus 4 ~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~ 78 (239)
.+.|++|++||+.+ +.++..+.+|. ..|.+++|+| ++++|++|+.|++|++||+.+++..
T Consensus 36 ~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~--------------~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~ 100 (319)
T 3frx_A 36 ASRDKTLISWKLTGDDQKFGVPVRSFKGHS--------------HIVQDCTLTA-DGAYALSASWDKTLRLWDVATGETY 100 (319)
T ss_dssp EETTSEEEEEEEEEETTEEEEEEEEEECCS--------------SCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred ecCCccEEEecCCCCCccccccceEEeCCc--------------ccEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCee
Confidence 35789999999864 34567888998 9999999999 8999999999999999999999988
Q ss_pred eee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCC------CCEEEEEecCCeE
Q psy11036 79 MSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG------GKRLISASLDHHA 150 (239)
Q Consensus 79 ~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~------~~~l~~~~~d~~i 150 (239)
..+ .|...|.+++|+|++.++++++ |+.|++||++ ++.+..+.+|...|.+++++|. +..+++++.|+.|
T Consensus 101 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i 178 (319)
T 3frx_A 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178 (319)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCE
T ss_pred EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEE
Confidence 887 7999999999999999999998 8999999996 5677888899999999999985 4489999999999
Q ss_pred EEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCC
Q psy11036 151 KIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPS 230 (239)
Q Consensus 151 ~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~ 230 (239)
++||++ ..+....+.+|...|.+++|+|++++|++++.||.|++||+.+++++..+....
T Consensus 179 ~~wd~~--------------------~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 238 (319)
T 3frx_A 179 KAWNLN--------------------QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238 (319)
T ss_dssp EEEETT--------------------TTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS
T ss_pred EEEECC--------------------cchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 999988 466677778999999999999999999999999999999999999999999889
Q ss_pred CeeeeEecC
Q psy11036 231 PVLSIDVSM 239 (239)
Q Consensus 231 ~v~~~~~sp 239 (239)
+|.+++|+|
T Consensus 239 ~v~~~~~sp 247 (319)
T 3frx_A 239 EVFSLAFSP 247 (319)
T ss_dssp CEEEEEECS
T ss_pred cEEEEEEcC
Confidence 999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=240.26 Aligned_cols=200 Identities=24% Similarity=0.283 Sum_probs=183.2
Q ss_pred CCCCCEEEEeeCCCcce--eeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 4 DLPILIVALWDIPSEAQ--VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
.+.|++|+|||+.+++. ...+.+|. ..|.+++|++ ++.++++++.|++|++||+.+++.+..+
T Consensus 54 gs~D~~v~vW~~~~~~~~~~~~l~gh~--------------~~v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~~~~ 118 (321)
T 3ow8_A 54 GSLDDLVKVWKWRDERLDLQWSLEGHQ--------------LGVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSI 118 (321)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCS--------------SCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EcCCCCEEEEECCCCCeeeeeeeccCC--------------CCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCEEEEE
Confidence 36789999999977653 45688898 9999999999 7899999999999999999999888877
Q ss_pred -cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccce
Q psy11036 82 -NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKT 159 (239)
Q Consensus 82 -~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~ 159 (239)
.+...+.+++|+|+++++++++ ++.+++|+++ .++....+..|...|.+++|+|++++|++++.|+.|++||++
T Consensus 119 ~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~-~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~--- 194 (321)
T 3ow8_A 119 DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE-SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA--- 194 (321)
T ss_dssp ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT-TCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT---
T ss_pred eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC-CCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECC---
Confidence 5778899999999999999999 7999999999 777788888899999999999999999999999999999988
Q ss_pred EeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEec
Q psy11036 160 VSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 160 ~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s 238 (239)
.++++..+.+|..+|.+++|+|++++|++++.|+.|++||+++++.+..+. |...|.+++|+
T Consensus 195 -----------------~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 257 (321)
T 3ow8_A 195 -----------------TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257 (321)
T ss_dssp -----------------TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred -----------------CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEEC
Confidence 567777888999999999999999999999999999999999999998888 88899999998
Q ss_pred C
Q psy11036 239 M 239 (239)
Q Consensus 239 p 239 (239)
|
T Consensus 258 p 258 (321)
T 3ow8_A 258 P 258 (321)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-37 Score=233.74 Aligned_cols=218 Identities=23% Similarity=0.357 Sum_probs=192.4
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
+.||.|++|++.+++....+.+|. ..|.+++|+| ++++|++++.|+.|++||+++++.+..+ .|
T Consensus 42 ~~dg~i~iw~~~~~~~~~~~~~h~--------------~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 106 (312)
T 4ery_A 42 SADKLIKIWGAYDGKFEKTISGHK--------------LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 106 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCS--------------SCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred eCCCeEEEEeCCCcccchhhccCC--------------CceEEEEEcC-CCCEEEEECCCCEEEEEECCCCcEEEEEcCC
Confidence 468999999999999999999998 9999999999 8999999999999999999999988888 68
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEe
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVS 161 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~ 161 (239)
...|.+++|+|+++++++++ |+.|++||++ .++.+..+..|..+|.+++|+|++++|++++.|+.|++||++ ++.+.
T Consensus 107 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 185 (312)
T 4ery_A 107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185 (312)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Confidence 99999999999999999998 8999999998 788888999999999999999999999999999999999998 44443
Q ss_pred ee-----------------------ecceeEEEEEccCCCEEEEEEecccCcEEE--EEE-ccCCCeEEEEcCCceEEEE
Q psy11036 162 SF-----------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTS--LCL-ASGGKRLISASLDHHAKIY 215 (239)
Q Consensus 162 ~~-----------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~--~~~-s~~~~~l~s~s~d~~i~iw 215 (239)
.+ ..++.+++||+++ .+.+..+.+|...+.. ..+ .+++.+|++|+.||.|++|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vw 264 (312)
T 4ery_A 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264 (312)
T ss_dssp EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEE
T ss_pred EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEE
Confidence 32 2345699999987 6777888888765332 233 3678999999999999999
Q ss_pred EccCCeeeEEec-CCCCeeeeEecC
Q psy11036 216 EMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 216 d~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
|+.+++.+..+. |...|.+++|+|
T Consensus 265 d~~~~~~~~~~~~h~~~v~~~~~~p 289 (312)
T 4ery_A 265 NLQTKEIVQKLQGHTDVVISTACHP 289 (312)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECS
T ss_pred ECCCchhhhhhhccCCcEEEEeecC
Confidence 999999999998 888999999987
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-37 Score=232.14 Aligned_cols=205 Identities=19% Similarity=0.227 Sum_probs=179.9
Q ss_pred ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCc
Q psy11036 19 AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGG 97 (239)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 97 (239)
+..+++.+|. +.|++++|+| ++++|++++.||+|++||+.+++.+..+ .|..+|.+++|+|+++
T Consensus 4 ~~~~~~~~h~--------------~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 4 DIKKTFSNRS--------------DRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68 (304)
T ss_dssp CCEEEEEEEC--------------SCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT
T ss_pred eeEEeecCCC--------------CceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCC
Confidence 4566788888 9999999999 8999999999999999999999888887 5889999999999999
Q ss_pred EEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-c-ceEeee-----------
Q psy11036 98 IFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-L-KTVSSF----------- 163 (239)
Q Consensus 98 ~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~----------- 163 (239)
++++++ |+.|++||++ .++.+..+.+|...|.+++|+|++++|++++.|++|++||++ . .....+
T Consensus 69 ~l~s~s~d~~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYN-TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (304)
T ss_dssp EEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEE
T ss_pred EEEEECCCCEEEEEECC-CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEE
Confidence 999998 7999999998 788899999999999999999999999999999999999987 3 222222
Q ss_pred ------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc--CCCeEEEEcCCceEEEEEccCCeeeEEec-C
Q psy11036 164 ------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS--GGKRLISASLDHHAKIYEMVNFSPVHTLD-Y 228 (239)
Q Consensus 164 ------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~ 228 (239)
..++.|++||++..........+|...+..+.|+| ++++|++++.|+.|++||+++++++.++. |
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h 227 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC
Confidence 22455999999875555545556778899999987 77899999999999999999999999998 8
Q ss_pred CCCeeeeEecC
Q psy11036 229 PSPVLSIDVSM 239 (239)
Q Consensus 229 ~~~v~~~~~sp 239 (239)
...|.+++|+|
T Consensus 228 ~~~v~~~~~~p 238 (304)
T 2ynn_A 228 MSNVSFAVFHP 238 (304)
T ss_dssp SSCEEEEEECS
T ss_pred CCCEEEEEECC
Confidence 88999999987
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=238.91 Aligned_cols=210 Identities=23% Similarity=0.377 Sum_probs=180.6
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
+.|+.|++||+++++.+..+.+|. ..|.+++|+| ++++|++++.|++|++||+++++....+.+.
T Consensus 142 ~~d~~i~iwd~~~~~~~~~~~~h~--------------~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~ 206 (393)
T 1erj_A 142 AEDRLIRIWDIENRKIVMILQGHE--------------QDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206 (393)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCS--------------SCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred cCCCeEEEEECCCCcEEEEEccCC--------------CCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEEcC
Confidence 458999999999999999999998 9999999999 7899999999999999999999888888888
Q ss_pred CCEEEEEEec-CCcEEEEeC-CCcEEEEEccCCCeEEEEE-------eccCCceEEEEEcCCCCEEEEEecCCeEEEEEc
Q psy11036 85 SPVESVLCLP-SGGIFVTGG-GLDVCIWDMLGGGKLLHKF-------TCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 155 (239)
Q Consensus 85 ~~v~~~~~~~-~~~~l~~~~-~~~i~~~d~~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 155 (239)
..+.+++|+| ++.++++++ |+.|++||++ .++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 207 ~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp SCEEEEEECSTTCCEEEEEETTSCEEEEETT-TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEcCCCcEEEEECC-CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 8999999999 899999988 8999999998 66666665 578999999999999999999999999999999
Q ss_pred c-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCee
Q psy11036 156 T-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVL 233 (239)
Q Consensus 156 ~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~ 233 (239)
+ ....... .......+...+.+|...|.+++|+|++++|++|+.|+.|++||+.+++++..+. |...|.
T Consensus 286 ~~~~~~~~~---------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~ 356 (393)
T 1erj_A 286 QNANNKSDS---------KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356 (393)
T ss_dssp ------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCCCCcccc---------cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE
Confidence 8 2211111 0001234566778999999999999999999999999999999999999999988 888999
Q ss_pred eeEecC
Q psy11036 234 SIDVSM 239 (239)
Q Consensus 234 ~~~~sp 239 (239)
+++|+|
T Consensus 357 ~v~~~~ 362 (393)
T 1erj_A 357 SVAVAN 362 (393)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 999875
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=239.43 Aligned_cols=197 Identities=21% Similarity=0.313 Sum_probs=178.2
Q ss_pred CCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCe
Q psy11036 40 TPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGK 117 (239)
Q Consensus 40 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~ 117 (239)
.|.++|++++|+| ++.+|++|+.||+|++||+.+++....+ .|...|.+++|+|+++++++++ |+.|++||+. ..+
T Consensus 106 gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~-~~~ 183 (410)
T 1vyh_C 106 GHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-GFE 183 (410)
T ss_dssp CCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-SSC
T ss_pred ccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCc
Confidence 3449999999999 7899999999999999999999988888 6999999999999999999998 8999999998 788
Q ss_pred EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee----------------------ecceeEEEEEc
Q psy11036 118 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF----------------------TGGLDVCIWDM 174 (239)
Q Consensus 118 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~----------------------~~~~~i~~~d~ 174 (239)
.+..+.+|...|.+++|+|++++|++++.|+.|++||++ +.++..+ ..++.+++||+
T Consensus 184 ~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 888999999999999999999999999999999999998 6555544 22455999999
Q ss_pred cCCCEEEEEEecccCcEEEEEEccC--------------------CCeEEEEcCCceEEEEEccCCeeeEEec-CCCCee
Q psy11036 175 LGGGKLLHKFTCHHKTVTSLCLASG--------------------GKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVL 233 (239)
Q Consensus 175 ~~~~~~~~~~~~h~~~v~~~~~s~~--------------------~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~ 233 (239)
.+ .+....+.+|...|.+++|+|+ +.+|++|+.|+.|++||+.+++++..+. |...|.
T Consensus 264 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~ 342 (410)
T 1vyh_C 264 AT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 342 (410)
T ss_dssp TT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred CC-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEE
Confidence 87 5677788999999999999996 6789999999999999999999999987 888999
Q ss_pred eeEecC
Q psy11036 234 SIDVSM 239 (239)
Q Consensus 234 ~~~~sp 239 (239)
+++|+|
T Consensus 343 ~v~~~~ 348 (410)
T 1vyh_C 343 GVLFHS 348 (410)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 999987
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=231.02 Aligned_cols=218 Identities=21% Similarity=0.275 Sum_probs=188.1
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC------ce
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD------PV 78 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~------~~ 78 (239)
+.||.|++||..+++....+..|. ..|.+++|+| ++.++++|+.|+.+++|++.... ..
T Consensus 83 s~Dg~v~vWd~~~~~~~~~~~~~~--------------~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~ 147 (354)
T 2pbi_B 83 SQDGKVIVWDSFTTNKEHAVTMPC--------------TWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDKNENMAAKK 147 (354)
T ss_dssp ETTSEEEEEETTTCCEEEEEECSS--------------SCCCEEEECT-TSSEEEEESTTSEEEEEECCCCTTCCSGGGC
T ss_pred eCCCeEEEEECCCCCcceEEecCC--------------CCEEEEEECC-CCCEEEEeeCCCCEEEEEEeccccccccccc
Confidence 568999999999999999999888 8999999999 89999999999999999986542 22
Q ss_pred eee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcC--CCCEEEEEecCCeEEEEE
Q psy11036 79 MSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS--GGKRLISASLDHHAKIYE 154 (239)
Q Consensus 79 ~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~i~d 154 (239)
..+ .|...|.+++|+|++..+++++ |+.|++||++ .++.+..+.+|...|.+++|+| ++++|++|+.|+.|++||
T Consensus 148 ~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd 226 (354)
T 2pbi_B 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE-SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226 (354)
T ss_dssp EEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEE
T ss_pred eeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 333 5899999999999999998888 8999999998 7888999999999999999987 568999999999999999
Q ss_pred cc-cceEeee----------------------ecceeEEEEEccCCCEEEEEEecc--cCcEEEEEEccCCCeEEEEcCC
Q psy11036 155 MT-LKTVSSF----------------------TGGLDVCIWDMLGGGKLLHKFTCH--HKTVTSLCLASGGKRLISASLD 209 (239)
Q Consensus 155 ~~-~~~~~~~----------------------~~~~~i~~~d~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~d 209 (239)
++ ++++..+ ..++.+++||++.. +.+..+..+ ...+.+++|+|++++|++|+.|
T Consensus 227 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d 305 (354)
T 2pbi_B 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-REVAIYSKESIIFGASSVDFSLSGRLLFAGYND 305 (354)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCCCcccceeEEEEeCCCCEEEEEECC
Confidence 98 5555544 22455999999874 444444433 3578999999999999999999
Q ss_pred ceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 210 HHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 210 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
+.|++||+.+++.+..+. |...|++++|+|
T Consensus 306 ~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp 336 (354)
T 2pbi_B 306 YTINVWDVLKGSRVSILFGHENRVSTLRVSP 336 (354)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECT
T ss_pred CcEEEEECCCCceEEEEECCCCcEEEEEECC
Confidence 999999999999998887 889999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=249.37 Aligned_cols=214 Identities=21% Similarity=0.284 Sum_probs=186.1
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSP 86 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~ 86 (239)
+.|++|| +++...++.+|. ..|.+++|+|++...|++|+.|++|++||..+++....+ +|...
T Consensus 129 ~~v~~wd--~~~~~~~l~gh~--------------~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~ 192 (611)
T 1nr0_A 129 GHVFLFD--TGTSNGNLTGQA--------------RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 192 (611)
T ss_dssp EEEEETT--TCCBCBCCCCCS--------------SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSC
T ss_pred eEEEEee--CCCCcceecCCC--------------CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCc
Confidence 5788888 466777889998 999999999944457999999999999999888877777 69999
Q ss_pred EEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEe-------ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-c
Q psy11036 87 VESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFT-------CHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-L 157 (239)
Q Consensus 87 v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~ 157 (239)
|.+++|+|++++|++++ |+.|++||+. .++....+. +|.+.|.+++|+|++++|++++.|++|++||++ +
T Consensus 193 V~~v~fspdg~~las~s~D~~i~lwd~~-~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 193 VHSVRYNPDGSLFASTGGDGTIVLYNGV-DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred eEEEEECCCCCEEEEEECCCcEEEEECC-CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence 99999999999999998 8999999998 677777774 799999999999999999999999999999998 5
Q ss_pred ceEeee-----------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEE
Q psy11036 158 KTVSSF-----------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 214 (239)
Q Consensus 158 ~~~~~~-----------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~i 214 (239)
+.+..+ ..++.+++||... .++...+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~-~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~ 350 (611)
T 1nr0_A 272 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL-GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINS 350 (611)
T ss_dssp EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC-CCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 554433 2345689999876 5677788999999999999999999999999999999
Q ss_pred EEccCCeeeEEec--CCCCeeeeEecC
Q psy11036 215 YEMVNFSPVHTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 215 wd~~~~~~~~~~~--~~~~v~~~~~sp 239 (239)
||+.+++....+. |...|.+++|+|
T Consensus 351 Wd~~~~~~~~~~~~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 351 WDISTGISNRVFPDVHATMITGIKTTS 377 (611)
T ss_dssp EETTTCCEEECSSCSCSSCEEEEEECT
T ss_pred EECCCCceeeecccCCcceEEEEEECC
Confidence 9999998877653 778899998864
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=248.54 Aligned_cols=218 Identities=21% Similarity=0.298 Sum_probs=183.0
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee---
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--- 81 (239)
+.|+.|++||..+++...++.+|. +.|.+++|+| ++++|++++.|++|++||+.+++....+
T Consensus 167 s~D~~v~lwd~~~~~~~~~l~~H~--------------~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~ 231 (611)
T 1nr0_A 167 SDDNTVAIFEGPPFKFKSTFGEHT--------------KFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 231 (611)
T ss_dssp ETTSCEEEEETTTBEEEEEECCCS--------------SCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred eCCCeEEEEECCCCeEeeeecccc--------------CceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccc
Confidence 468999999999999999999999 9999999999 8999999999999999999999887766
Q ss_pred -----cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE------------------------------------
Q psy11036 82 -----NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL------------------------------------ 119 (239)
Q Consensus 82 -----~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~------------------------------------ 119 (239)
.|...|.+++|+|++++|++++ |+.|++||++ .++.+
T Consensus 232 ~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~ 310 (611)
T 1nr0_A 232 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA-TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 310 (611)
T ss_dssp TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC-CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEe
Confidence 5889999999999999999998 8999999997 44433
Q ss_pred -------EEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee----------------------------
Q psy11036 120 -------HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF---------------------------- 163 (239)
Q Consensus 120 -------~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~---------------------------- 163 (239)
..+.+|...|.+++|+|+|++|++++.|+.|++||+. ++....+
T Consensus 311 ~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v 390 (611)
T 1nr0_A 311 PELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHL 390 (611)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEE
T ss_pred CCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCce
Confidence 3445789999999999999999999999999999976 2211100
Q ss_pred ----------------------------------------------------------------------------ecce
Q psy11036 164 ----------------------------------------------------------------------------TGGL 167 (239)
Q Consensus 164 ----------------------------------------------------------------------------~~~~ 167 (239)
..++
T Consensus 391 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~ 470 (611)
T 1nr0_A 391 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDS 470 (611)
T ss_dssp EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred EEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCC
Confidence 1123
Q ss_pred eEEEEEccCCCE-EEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC-CeeeEE--ec-CCCCeeeeEecC
Q psy11036 168 DVCIWDMLGGGK-LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN-FSPVHT--LD-YPSPVLSIDVSM 239 (239)
Q Consensus 168 ~i~~~d~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~-~~~~~~--~~-~~~~v~~~~~sp 239 (239)
.|++||+.+... .... .+|...|.+++|+|+|++|++++.|++|++||+.+ ++.+.. +. |...|++++|+|
T Consensus 471 ~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fsp 546 (611)
T 1nr0_A 471 KVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 546 (611)
T ss_dssp EEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred eEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECC
Confidence 478888765422 2233 67999999999999999999999999999999987 666554 34 888999999998
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=232.22 Aligned_cols=197 Identities=21% Similarity=0.324 Sum_probs=171.4
Q ss_pred CCCCEEEEeeCCCc-------ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc
Q psy11036 5 LPILIVALWDIPSE-------AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP 77 (239)
Q Consensus 5 ~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~ 77 (239)
+.|++|++||+.+. .+...+.+|. ..|.+++|+| ++.++++|+.|++|++||+++++.
T Consensus 46 s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~--------------~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~ 110 (343)
T 2xzm_R 46 SRDKTVMIWKLYEEEQNGYFGIPHKALTGHN--------------HFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTT 110 (343)
T ss_dssp ETTSCEEEEEECSSCCSSBSEEEEEEECCCS--------------SCEEEEEECS-STTEEEEEETTSEEEEEETTSSCE
T ss_pred cCCCEEEEEECCcCCcccccccccchhccCC--------------CceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcE
Confidence 56899999998753 4566788888 9999999999 899999999999999999999998
Q ss_pred eeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEe---ccCCceEEEEEcCCC----------CEEE
Q psy11036 78 VMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFT---CHHKTVTSLCLASGG----------KRLI 142 (239)
Q Consensus 78 ~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~---~~~~~i~~i~~~~~~----------~~l~ 142 (239)
...+ .|...|.+++|+|+++++++++ |+.|++||+. .. ...... .|...|.+++|+|++ .+|+
T Consensus 111 ~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~ 188 (343)
T 2xzm_R 111 YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188 (343)
T ss_dssp EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEE
Confidence 8887 7999999999999999999988 8999999997 33 333333 688899999999987 7899
Q ss_pred EEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc-CCe
Q psy11036 143 SASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV-NFS 221 (239)
Q Consensus 143 ~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~-~~~ 221 (239)
+++.|+.|++||.. .+....+.+|...|.+++|+|++++|++|+.||.|++||+. ...
T Consensus 189 s~~~d~~i~iwd~~---------------------~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~ 247 (343)
T 2xzm_R 189 SVGWDGRLKVWNTN---------------------FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY 247 (343)
T ss_dssp EEETTSEEEEEETT---------------------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred EEcCCCEEEEEcCC---------------------CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 99999999999965 55666778999999999999999999999999999999994 455
Q ss_pred eeEEecCCCCeeeeEecC
Q psy11036 222 PVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 222 ~~~~~~~~~~v~~~~~sp 239 (239)
+...+.+...|.+++|+|
T Consensus 248 ~~~~~~~~~~v~~v~~sp 265 (343)
T 2xzm_R 248 PQREFDAGSTINQIAFNP 265 (343)
T ss_dssp CSEEEECSSCEEEEEECS
T ss_pred cceeecCCCcEEEEEECC
Confidence 666666777899999987
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=229.99 Aligned_cols=204 Identities=18% Similarity=0.212 Sum_probs=165.6
Q ss_pred CCCCCCEEEEeeCCCc--ceeeee-eC-CceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC---
Q psy11036 3 HDLPILIVALWDIPSE--AQVSTF-TN-HTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP--- 75 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~--~~~~~~-~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~--- 75 (239)
+.+.|+.|++||+.++ +....+ .. |. ..|.+++|+| ++++|++|+.|++|++||+...
T Consensus 29 s~~~D~~i~lw~~~~~~~~~~~~~~~~~h~--------------~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~ 93 (330)
T 2hes_X 29 TGSTDRKIKLVSVKYDDFTLIDVLDETAHK--------------KAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADR 93 (330)
T ss_dssp EEESSSCEEEEECSSSCCEEEEEECTTCCC--------------SCEEEEEECT-TSSEEEEEETTSCEEEEEC------
T ss_pred EEcCCCEEEEEEecCCCeEEEEEEecCCcc--------------CCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCc
Confidence 3467999999999875 344555 34 77 8999999999 7999999999999999998532
Q ss_pred ----Cceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCC---CeEEEEEeccCCceEEEEEcCCCCEEEEEec
Q psy11036 76 ----DPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGG---GKLLHKFTCHHKTVTSLCLASGGKRLISASL 146 (239)
Q Consensus 76 ----~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 146 (239)
+....+ .|...|.+++|+|++++|++++ |+.|++||++.. .+.+..+.+|...|.+++|+|++.+|++++.
T Consensus 94 ~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 173 (330)
T 2hes_X 94 TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173 (330)
T ss_dssp -CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 234445 6899999999999999999998 899999999523 3567788899999999999999999999999
Q ss_pred CCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC--CCeEEEEcCCceEEEEEccCC----
Q psy11036 147 DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG--GKRLISASLDHHAKIYEMVNF---- 220 (239)
Q Consensus 147 d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~---- 220 (239)
|++|++||... ...+++..+.+|...|.+++|+|+ +.+|++++.|++|++||+.++
T Consensus 174 D~~i~iW~~~~------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~ 235 (330)
T 2hes_X 174 DDTVRIWKDYD------------------DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD 235 (330)
T ss_dssp TSCEEEEEEET------------------TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTS
T ss_pred CCeEEEEECCC------------------CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccc
Confidence 99999999861 112566778899999999999998 678999999999999999764
Q ss_pred ----eeeEEec--CCCCeeeeEecC
Q psy11036 221 ----SPVHTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 221 ----~~~~~~~--~~~~v~~~~~sp 239 (239)
.....+. |...|.+++|+|
T Consensus 236 ~~~~~~~~~~~~~h~~~v~~v~~s~ 260 (330)
T 2hes_X 236 QQEWVCEAILPDVHKRQVYNVAWGF 260 (330)
T ss_dssp CEEEEEEEECCSCCSSCEEEEEECT
T ss_pred cceeEEeeecccccccceEEEEEcC
Confidence 3444444 678999999975
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-36 Score=230.11 Aligned_cols=194 Identities=19% Similarity=0.385 Sum_probs=171.4
Q ss_pred CCCCEEEEeeCCCc----ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee
Q psy11036 5 LPILIVALWDIPSE----AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS 80 (239)
Q Consensus 5 ~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 80 (239)
+.|+.|++||+.++ +....+.+|. +.|.++.|++ ++ .+++++.|++|++||+++++.+..
T Consensus 116 ~~d~~v~iw~~~~~~~~~~~~~~~~~h~--------------~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~ 179 (340)
T 1got_B 116 GLDNICSIYNLKTREGNVRVSRELAGHT--------------GYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTT 179 (340)
T ss_dssp ETTCEEEEEETTTCSBSCEEEEEEECCS--------------SCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEE
T ss_pred eCCCeEEEEECccCCCcceeEEEecCCC--------------ccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEE
Confidence 46899999999865 3456778888 9999999998 44 588999999999999999998888
Q ss_pred e-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-c
Q psy11036 81 V-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-L 157 (239)
Q Consensus 81 ~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~ 157 (239)
+ .|...|.+++|+|+++++++++ |+.|++||++ .+.....+.+|...|.+++|+|++++|++++.|+.|++||++ .
T Consensus 180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~-~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC-CCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 8 6899999999999999999998 8999999998 788889999999999999999999999999999999999998 4
Q ss_pred ceEeee------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEE
Q psy11036 158 KTVSSF------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAK 213 (239)
Q Consensus 158 ~~~~~~------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~ 213 (239)
+.+..+ ..++.+++||+.+ .+.+..+.+|...|.+++|+|++++|++|+.|+.|+
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~-~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~ 337 (340)
T 1got_B 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK-ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc-CcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEE
Confidence 433322 2345699999886 567788899999999999999999999999999999
Q ss_pred EEE
Q psy11036 214 IYE 216 (239)
Q Consensus 214 iwd 216 (239)
|||
T Consensus 338 iWd 340 (340)
T 1got_B 338 IWN 340 (340)
T ss_dssp EEC
T ss_pred ecC
Confidence 996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=232.23 Aligned_cols=181 Identities=20% Similarity=0.282 Sum_probs=156.3
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec--
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-- 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-- 82 (239)
+.||.|++||+++++++.++.+|. +.|++++|+|++..+|++++.|++|++||++++++...+.
T Consensus 146 s~d~~i~iwd~~~~~~~~~~~~h~--------------~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 211 (344)
T 4gqb_B 146 SKDICIKVWDLAQQVVLSSYRAHA--------------AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS 211 (344)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCS--------------SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--
T ss_pred eCCCeEEEEECCCCcEEEEEcCcC--------------CceEEEEecCCCCCceeeeccccccccccccccceeeeeecc
Confidence 468999999999999999999999 9999999999656789999999999999999999888763
Q ss_pred -CCCCEEEEEEecC-CcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEEcccc
Q psy11036 83 -HGSPVESVLCLPS-GGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMTLK 158 (239)
Q Consensus 83 -~~~~v~~~~~~~~-~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~ 158 (239)
+...+.+++|+|+ +.++++++ |+.|++||++ .++.+..+.+|...|++++|+|++ ++|++|+.|++|+|||++
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~-~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~-- 288 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK-STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS-- 288 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTSEEEEEESC-C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT--
T ss_pred eeeccceeeeecCCCCcceEEeccCCcEEEEECC-CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC--
Confidence 5567999999995 56777777 8999999999 788889999999999999999998 579999999999999987
Q ss_pred eEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC-eEEEEcCCceEEEEEccCCe
Q psy11036 159 TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISASLDHHAKIYEMVNFS 221 (239)
Q Consensus 159 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~ 221 (239)
.++ +..+.+|...|.+++|+|+++ +|++++.|++|++|++.+..
T Consensus 289 ------------------~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 289 ------------------LSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp ------------------CCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred ------------------CCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 233 345688999999999999886 56799999999999997653
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=225.99 Aligned_cols=198 Identities=18% Similarity=0.336 Sum_probs=168.4
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
+.|+.|++||+++++.+..+.+|. ..|.+++|+| ++.+|++|+.|++|++||++. +.+..+ .|
T Consensus 84 s~D~~v~~wd~~~~~~~~~~~~h~--------------~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h 147 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQRFVGHK--------------SDVMSVDIDK-KASMIISGSRDKTIKVWTIKG-QCLATLLGH 147 (319)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCS--------------SCEEEEEECT-TSCEEEEEETTSCEEEEETTS-CEEEEECCC
T ss_pred eCCCEEEEEECCCCCeeEEEccCC--------------CcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeEEEEecc
Confidence 468999999999999999999999 9999999999 899999999999999999974 445555 79
Q ss_pred CCCEEEEEEecCC------cEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 84 GSPVESVLCLPSG------GIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 84 ~~~v~~~~~~~~~------~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
...+.++++.|.. ..+++++ |+.|++||++ ..+....+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETT-TTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC-cchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 9999999999854 4777777 8999999998 788888899999999999999999999999999999999998
Q ss_pred -cceEeeee--------------------cceeEEEEEccCCCEEEEEEe--------cccCcEEEEEEccCCCeEEEEc
Q psy11036 157 -LKTVSSFT--------------------GGLDVCIWDMLGGGKLLHKFT--------CHHKTVTSLCLASGGKRLISAS 207 (239)
Q Consensus 157 -~~~~~~~~--------------------~~~~i~~~d~~~~~~~~~~~~--------~h~~~v~~~~~s~~~~~l~s~s 207 (239)
.+.+..+. ....+++|++.. ...+..+. .|...+.+++|+|+|++|++|+
T Consensus 227 ~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDP-QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp TTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETT-EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred CCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCc-CeeeeccCccccccccCcCcceeEEEECCCCCEEEEee
Confidence 55554442 123378888765 34444443 3456799999999999999999
Q ss_pred CCceEEEEEccCC
Q psy11036 208 LDHHAKIYEMVNF 220 (239)
Q Consensus 208 ~d~~i~iwd~~~~ 220 (239)
.||.|++||+.++
T Consensus 306 ~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 306 TDNVIRVWQVMTA 318 (319)
T ss_dssp TTSCEEEEEEEEC
T ss_pred cCceEEEEEEeec
Confidence 9999999999764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=229.67 Aligned_cols=202 Identities=23% Similarity=0.305 Sum_probs=167.9
Q ss_pred CCCCEEEEeeCCCcceee---eeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC--cee
Q psy11036 5 LPILIVALWDIPSEAQVS---TFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD--PVM 79 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~--~~~ 79 (239)
+.|+.|+|||+++++... ...+|. ..|.+++|+| ++++|++|+.|+++++|++.++. .+.
T Consensus 35 ~~D~~i~iw~~~~~~~~~~~~~~~~h~--------------~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~ 99 (345)
T 3fm0_A 35 GGDRRIRIWGTEGDSWICKSVLSEGHQ--------------RTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVT 99 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECSSCS--------------SCEEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEE
T ss_pred cCCCeEEEEEcCCCcceeeeeeccccC--------------CcEEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEE
Confidence 468999999998775432 235787 9999999999 89999999999999999998764 345
Q ss_pred ee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCC--eEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEc
Q psy11036 80 SV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGG--KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 155 (239)
Q Consensus 80 ~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 155 (239)
.+ .|...|.+++|+|++++|++++ |+.|++||++... ..+..+..|...|.+++|+|++++|++++.|+.|++||.
T Consensus 100 ~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~ 179 (345)
T 3fm0_A 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRE 179 (345)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEE
T ss_pred EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEe
Confidence 55 6999999999999999999998 8999999997332 346678899999999999999999999999999999998
Q ss_pred ccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCC---------------
Q psy11036 156 TLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNF--------------- 220 (239)
Q Consensus 156 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~--------------- 220 (239)
+.. ...+...+.+|...|.+++|+|++++|++++.|++|++||....
T Consensus 180 ~~~------------------~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 180 EED------------------DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp ETT------------------EEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred cCC------------------CEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 711 12345667899999999999999999999999999999997432
Q ss_pred eeeEEec--CCCCeeeeEecC
Q psy11036 221 SPVHTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 221 ~~~~~~~--~~~~v~~~~~sp 239 (239)
+++..+. +...|.+++|+|
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~ 262 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQ 262 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECT
T ss_pred ceeEEecCCCCCcEEEEEEec
Confidence 2334443 677899999986
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=219.64 Aligned_cols=216 Identities=19% Similarity=0.324 Sum_probs=186.1
Q ss_pred CCCEEEEeeCCCcceee---eee--CCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC--ce
Q psy11036 6 PILIVALWDIPSEAQVS---TFT--NHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD--PV 78 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~--~~ 78 (239)
.||.|++||+.+++... .+. .|. ..|.+++|+| ++++|++++.|+.|++||+.+++ ..
T Consensus 70 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~ 134 (337)
T 1gxr_A 70 GKGCVKVWDISHPGNKSPVSQLDCLNRD--------------NYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIK 134 (337)
T ss_dssp CBSEEEEEETTSTTCCSCSEEEECSCTT--------------SBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEE
T ss_pred CCCeEEEEECCCCCceeeeecccccCCC--------------CcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCccee
Confidence 38999999998765433 333 566 8999999999 89999999999999999999887 33
Q ss_pred eee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 79 MSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 79 ~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
..+ .|...+.+++|+|+++++++++ ++.|++||++ .++.+..+..|...+.+++|+|++++|++++.|+.|++||++
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 344 5888999999999999999888 7999999998 788889999999999999999999999999999999999998
Q ss_pred -cceEeee---------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEE
Q psy11036 157 -LKTVSSF---------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 214 (239)
Q Consensus 157 -~~~~~~~---------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~i 214 (239)
.+.+..+ ..++.+.+||+.+.. ...+..|...|.+++|+|++++|++++.||.|++
T Consensus 214 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp TTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC--eEEEcCCccceeEEEECCCCCEEEEecCCCcEEE
Confidence 4444333 224569999998744 3467789999999999999999999999999999
Q ss_pred EEccCCeeeEEecCCCCeeeeEecC
Q psy11036 215 YEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 215 wd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
||+.+++.+....+...+.+++|+|
T Consensus 292 ~~~~~~~~~~~~~~~~~v~~~~~s~ 316 (337)
T 1gxr_A 292 WRTPYGASIFQSKESSSVLSCDISV 316 (337)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECT
T ss_pred EECCCCeEEEEecCCCcEEEEEECC
Confidence 9999999998888999999999987
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=223.58 Aligned_cols=204 Identities=18% Similarity=0.212 Sum_probs=167.2
Q ss_pred CCCCEEEEeeCCC--cceeeeeeCCceeeccceeeccCCCCCeEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCC--cee
Q psy11036 5 LPILIVALWDIPS--EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV-SSDIVISGSYDKTVNVYDTRSPD--PVM 79 (239)
Q Consensus 5 ~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~v~vw~~~~~~--~~~ 79 (239)
+.|+.|+|||+.+ .+.+.++.+|. ++|.+++|++. ++++|++|+.|++|++||+++++ ...
T Consensus 28 s~D~~v~iw~~~~~~~~~~~~l~gH~--------------~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~ 93 (297)
T 2pm7_B 28 SSDKTIKIFEVEGETHKLIDTLTGHE--------------GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIA 93 (297)
T ss_dssp ETTSCEEEEEBCSSCBCCCEEECCCS--------------SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCE
T ss_pred eCCCEEEEEecCCCCcEEEEEEcccc--------------CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEE
Confidence 4689999999974 46788999999 99999999862 37899999999999999998874 344
Q ss_pred ee-cCCCCEEEEEEecC--CcEEEEeC-CCcEEEEEccCCCe-EEEEEeccCCceEEEEEcCC-------------CCEE
Q psy11036 80 SV-NHGSPVESVLCLPS--GGIFVTGG-GLDVCIWDMLGGGK-LLHKFTCHHKTVTSLCLASG-------------GKRL 141 (239)
Q Consensus 80 ~~-~~~~~v~~~~~~~~--~~~l~~~~-~~~i~~~d~~~~~~-~~~~~~~~~~~i~~i~~~~~-------------~~~l 141 (239)
.+ .|...|.+++|+|+ +.++++++ |+.|++||++.... ....+.+|...|.+++|+|+ +++|
T Consensus 94 ~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l 173 (297)
T 2pm7_B 94 VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173 (297)
T ss_dssp EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEE
T ss_pred EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceE
Confidence 44 58899999999997 78898888 89999999984322 24567889999999999997 5799
Q ss_pred EEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC---CeEEEEcCCceEEEEEc
Q psy11036 142 ISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG---KRLISASLDHHAKIYEM 217 (239)
Q Consensus 142 ~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~d~~i~iwd~ 217 (239)
++|+.|+.|++||++ .+. .......+.+|...|.+++|+|++ ++|++++.|++|++||+
T Consensus 174 ~sgs~D~~v~lwd~~~~~~-----------------~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 174 VTGGADNLVKIWKYNSDAQ-----------------TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp EEEETTSCEEEEEEETTTT-----------------EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred EEEcCCCcEEEEEEcCCCc-----------------eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 999999999999987 110 012456678999999999999984 89999999999999999
Q ss_pred cCCe---eeEEe---cCCCCeeeeEecC
Q psy11036 218 VNFS---PVHTL---DYPSPVLSIDVSM 239 (239)
Q Consensus 218 ~~~~---~~~~~---~~~~~v~~~~~sp 239 (239)
.+.. ....+ .+...|.+++|+|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 264 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSL 264 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECS
T ss_pred CCCCCccceeeeecccCCCcEEEEEECC
Confidence 7743 12222 3678899999987
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=225.98 Aligned_cols=195 Identities=24% Similarity=0.436 Sum_probs=170.1
Q ss_pred CCCCEEEEeeCCCc------ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce
Q psy11036 5 LPILIVALWDIPSE------AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV 78 (239)
Q Consensus 5 ~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~ 78 (239)
+.|+.+++|++... .....+..|. ..|.+++|+| ++..|++++.|++|++||+++++.+
T Consensus 125 ~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~--------------~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~ 189 (354)
T 2pbi_B 125 GLDNKCSVYPLTFDKNENMAAKKKSVAMHT--------------NYLSACSFTN-SDMQILTASGDGTCALWDVESGQLL 189 (354)
T ss_dssp STTSEEEEEECCCCTTCCSGGGCEEEEECS--------------SCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eCCCCEEEEEEeccccccccccceeeeccC--------------CcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEE
Confidence 46899999998643 3345667787 9999999999 7889999999999999999999998
Q ss_pred eee-cCCCCEEEEEEec--CCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEE
Q psy11036 79 MSV-NHGSPVESVLCLP--SGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 154 (239)
Q Consensus 79 ~~~-~~~~~v~~~~~~~--~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d 154 (239)
..+ .|...|.+++++| ++..+++++ |+.|++||++ .++.+..+..|...|.+++|+|++.+|++++.|++|++||
T Consensus 190 ~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~-~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd 268 (354)
T 2pbi_B 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR-SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268 (354)
T ss_dssp EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC-CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 888 6899999999988 467898888 8999999999 7888899999999999999999999999999999999999
Q ss_pred cc-cceEeee------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCC
Q psy11036 155 MT-LKTVSSF------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD 209 (239)
Q Consensus 155 ~~-~~~~~~~------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d 209 (239)
++ .+.+..+ ..++.+++||+.+ ++.+..+.+|...|.+++|+|++++|++|+.|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~-~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK-GSRVSILFGHENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC-CceEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence 97 3332221 2245699999976 56677889999999999999999999999999
Q ss_pred ceEEEEE
Q psy11036 210 HHAKIYE 216 (239)
Q Consensus 210 ~~i~iwd 216 (239)
+.|++|+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999995
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=228.68 Aligned_cols=221 Identities=17% Similarity=0.219 Sum_probs=183.1
Q ss_pred CCCCCEEEEeeCCCc----ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC----
Q psy11036 4 DLPILIVALWDIPSE----AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP---- 75 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~---- 75 (239)
.+.+|.|+||++.+. +....+.+|. +.|++++|+|.++++|++|+.||+|++||+.++
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~--------------~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~ 118 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHT--------------APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL 118 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCS--------------SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCC--------------CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence 467899999998654 2345677888 999999999966889999999999999999987
Q ss_pred ---Cceeee-cCCCCEEEEEEecCC-cEEEEeC-CCcEEEEEccCCCeEEEEE--eccCCceEEEEEcCCCCEEEEEecC
Q psy11036 76 ---DPVMSV-NHGSPVESVLCLPSG-GIFVTGG-GLDVCIWDMLGGGKLLHKF--TCHHKTVTSLCLASGGKRLISASLD 147 (239)
Q Consensus 76 ---~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~-~~~i~~~d~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d 147 (239)
+++..+ .|...|.+++|+|++ .++++++ |+.|++||++ .++.+..+ ..|...|.+++|+|++++|++++.|
T Consensus 119 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 197 (402)
T 2aq5_A 119 PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG-TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197 (402)
T ss_dssp CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT-TTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT
T ss_pred ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC-CCCccEEEecCCCCCceEEEEECCCCCEEEEEecC
Confidence 455556 699999999999998 5888877 8999999999 78888888 7899999999999999999999999
Q ss_pred CeEEEEEcc-cceEeee----------------------e-----cceeEEEEEccCCCEEEEEEe-cccCcEEEEEEcc
Q psy11036 148 HHAKIYEMT-LKTVSSF----------------------T-----GGLDVCIWDMLGGGKLLHKFT-CHHKTVTSLCLAS 198 (239)
Q Consensus 148 ~~i~i~d~~-~~~~~~~----------------------~-----~~~~i~~~d~~~~~~~~~~~~-~h~~~v~~~~~s~ 198 (239)
+.|++||++ ++.+..+ + .++.+.+||+++...++.... .|...+.+++|+|
T Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 277 (402)
T 2aq5_A 198 KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDP 277 (402)
T ss_dssp SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEET
T ss_pred CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcC
Confidence 999999998 4443332 2 245699999987655444333 5778899999999
Q ss_pred CCCeEE-EEcCCceEEEEEccCCee-e---EEecCCCCeeeeEecC
Q psy11036 199 GGKRLI-SASLDHHAKIYEMVNFSP-V---HTLDYPSPVLSIDVSM 239 (239)
Q Consensus 199 ~~~~l~-s~s~d~~i~iwd~~~~~~-~---~~~~~~~~v~~~~~sp 239 (239)
++++|+ +++.||.|++||+.++++ + ..+.+..++.+++|+|
T Consensus 278 ~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp 323 (402)
T 2aq5_A 278 DTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP 323 (402)
T ss_dssp TTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC
T ss_pred CCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec
Confidence 999986 566799999999998874 3 3344678999999987
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=237.80 Aligned_cols=213 Identities=25% Similarity=0.412 Sum_probs=187.4
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
+.||.|++||+. ++.+..+..|. ..|.+++|+| ++++|++++.|+.+++||. +++.+..+ .|
T Consensus 322 ~~d~~i~~w~~~-~~~~~~~~~~~--------------~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~ 384 (577)
T 2ymu_A 322 SDDKTVKLWNRN-GQHLQTLTGHS--------------SSVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGH 384 (577)
T ss_dssp ETTSCEEEEETT-SCEEEEECCCS--------------SCEEEEEECT-TSSEEEEEETTSEEEEEET-TCCEEEEEECC
T ss_pred eCCCeEEEEeCC-CCeeEEEeCCC--------------CCEEEEEECC-CCCEEEEEeCCCEEEEEcC-CCCEEEEecCC
Confidence 468999999975 45567788888 8999999999 8999999999999999995 46666666 68
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEee
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSS 162 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 162 (239)
...|.+++|+|+++++++++ |+.|++||. .++.+..+.+|...|++++|+|++++|++++.|+.|++||..++.+..
T Consensus 385 ~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~--~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~ 462 (577)
T 2ymu_A 385 SSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQT 462 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECT--TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeC--CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEE
Confidence 99999999999999999988 799999996 577888999999999999999999999999999999999987555444
Q ss_pred e----------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCC
Q psy11036 163 F----------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNF 220 (239)
Q Consensus 163 ~----------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~ 220 (239)
+ ..++.|++||. .++++..+.+|...|++++|+|++++|++++.||.|++||. ++
T Consensus 463 ~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~ 539 (577)
T 2ymu_A 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 539 (577)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEETTSEEEEEET--TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TS
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC--CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CC
Confidence 3 23456999995 36788889999999999999999999999999999999996 67
Q ss_pred eeeEEec-CCCCeeeeEecC
Q psy11036 221 SPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 221 ~~~~~~~-~~~~v~~~~~sp 239 (239)
+++..+. |.++|++++|+|
T Consensus 540 ~~~~~~~~h~~~v~~~~fs~ 559 (577)
T 2ymu_A 540 QLLQTLTGHSSSVWGVAFSP 559 (577)
T ss_dssp CEEEEEECCSSCEEEEEECT
T ss_pred CEEEEEcCCCCCEEEEEEcC
Confidence 8888887 889999999997
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=245.97 Aligned_cols=218 Identities=20% Similarity=0.295 Sum_probs=195.8
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHG 84 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~ 84 (239)
.+|.|+|||+.+++.+..+..|. .+|++++|+| ++++|++++.||.|++||+.+++.+..+ .|.
T Consensus 33 ~~g~v~iwd~~~~~~~~~~~~~~--------------~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 97 (814)
T 3mkq_A 33 YSGRVEIWNYETQVEVRSIQVTE--------------TPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP 97 (814)
T ss_dssp TTSEEEEEETTTTEEEEEEECCS--------------SCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred CCCEEEEEECCCCceEEEEecCC--------------CcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEecCC
Confidence 48999999999999999999998 9999999999 8999999999999999999999988888 599
Q ss_pred CCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEEcc-cceEe
Q psy11036 85 SPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMT-LKTVS 161 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~ 161 (239)
..|.+++|+|+++++++++ |+.|++||++........+..|...|.+++|+| ++..+++++.|+.|++||++ .....
T Consensus 98 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~ 177 (814)
T 3mkq_A 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE
T ss_pred CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence 9999999999999999888 799999999855578888899999999999999 88999999999999999986 22211
Q ss_pred ee-------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEE
Q psy11036 162 SF-------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 162 ~~-------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
.+ ..++.+.+||..+ .+.+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd 256 (814)
T 3mkq_A 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (814)
T ss_dssp EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 11 2345699999976 677888899999999999999999999999999999999
Q ss_pred ccCCeeeEEec-CCCCeeeeEecC
Q psy11036 217 MVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 217 ~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
+.+++.+..+. +...+.+++|+|
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~~~ 280 (814)
T 3mkq_A 257 SSTYKVEKTLNVGLERSWCIATHP 280 (814)
T ss_dssp TTTCSEEEEECCSSSSEEEEEECT
T ss_pred CCCCcEEEEeecCCCcEEEEEEcc
Confidence 99999999988 667999999987
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=219.25 Aligned_cols=214 Identities=19% Similarity=0.288 Sum_probs=180.2
Q ss_pred EEEeeC--CCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc-----eeee-
Q psy11036 10 VALWDI--PSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP-----VMSV- 81 (239)
Q Consensus 10 i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~-----~~~~- 81 (239)
++++.. ++.++..+|++|. +.|++++|+|+++++|+||+.|++|++||+.+.+. ...+
T Consensus 18 ~~~~~~~~~~~~l~~tL~GH~--------------~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~ 83 (340)
T 4aow_A 18 LYFQSMMTEQMTLRGTLKGHN--------------GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 83 (340)
T ss_dssp --------CEEEEEEEECCCS--------------SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC
T ss_pred EEEEEccCCceEEEEEECCcc--------------CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe
Confidence 444443 3345567899999 99999999996678999999999999999986643 3344
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceE
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTV 160 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 160 (239)
.|...|.+++|+|+++++++++ |+.|++|+.. ..........+...+..+.+++++..|++++.|+.+++||+.....
T Consensus 84 ~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT-TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred CCCCCEEEEEECCCCCEEEEEcccccceEEeec-ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce
Confidence 5899999999999999999998 8999999998 7777777888889999999999999999999999999999862211
Q ss_pred eee--------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEE
Q psy11036 161 SSF--------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 214 (239)
Q Consensus 161 ~~~--------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~i 214 (239)
... ..+..+++||+++ .+....+.+|...|.+++|+|++++|++|+.|+.|++
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~i 241 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 241 (340)
T ss_dssp EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 111 1234599999987 6788889999999999999999999999999999999
Q ss_pred EEccCCeeeEEecCCCCeeeeEecC
Q psy11036 215 YEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 215 wd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
||+.+++++..+.+...+.+++|+|
T Consensus 242 wd~~~~~~~~~~~~~~~v~~~~~~~ 266 (340)
T 4aow_A 242 WDLNEGKHLYTLDGGDIINALCFSP 266 (340)
T ss_dssp EETTTTEEEEEEECSSCEEEEEECS
T ss_pred EEeccCceeeeecCCceEEeeecCC
Confidence 9999999999999889999999986
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-36 Score=234.30 Aligned_cols=216 Identities=18% Similarity=0.270 Sum_probs=184.8
Q ss_pred EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCE
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPV 87 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v 87 (239)
.+..|+..+..+.+++.+|. +.|++++|+| ++++|++|+.|++|++||+.+++....+ .|...|
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~--------------~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v 111 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHS--------------GKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWV 111 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCS--------------SCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTC
T ss_pred cccccccceeEEeecccccc--------------cEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCE
Confidence 34567777788888999999 9999999999 8999999999999999999999888877 688999
Q ss_pred EEEEEecCCcEEEEeC-CCcEEEEEccCC------CeEEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEEcc-cc
Q psy11036 88 ESVLCLPSGGIFVTGG-GLDVCIWDMLGG------GKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMT-LK 158 (239)
Q Consensus 88 ~~~~~~~~~~~l~~~~-~~~i~~~d~~~~------~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~-~~ 158 (239)
.+++|+|+++++++++ |+.+++||+... ......+.+|.+.+.++.|.|++ ..|++++.|++|++||++ ++
T Consensus 112 ~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~ 191 (380)
T 3iz6_a 112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ 191 (380)
T ss_dssp CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence 9999999999999999 899999998631 12345577899999999999964 579999999999999997 44
Q ss_pred eEeee----------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc
Q psy11036 159 TVSSF----------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH 210 (239)
Q Consensus 159 ~~~~~----------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~ 210 (239)
.+..+ ..++.+++||++...+.+..+.+|...|.+++|+|++++|++|+.||
T Consensus 192 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 271 (380)
T 3iz6_a 192 RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271 (380)
T ss_dssp EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS
T ss_pred EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC
Confidence 43322 12445999999877788889999999999999999999999999999
Q ss_pred eEEEEEccCCeeeEEecCC--------CCeeeeEecC
Q psy11036 211 HAKIYEMVNFSPVHTLDYP--------SPVLSIDVSM 239 (239)
Q Consensus 211 ~i~iwd~~~~~~~~~~~~~--------~~v~~~~~sp 239 (239)
+|++||+++++.+..+... ..|.+++|+|
T Consensus 272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred eEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence 9999999999998887622 2488999987
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=224.69 Aligned_cols=224 Identities=13% Similarity=0.192 Sum_probs=187.9
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCC---CCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVS---SDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
.++.|++||+.+++.+..+..+. ...+...|++++|+|+. +.+|++|+.||.|++||+.+++.+..+
T Consensus 42 ~~~~v~vw~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 42 GSNRVTLYECHSQGEIRLLQSYV---------DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV 112 (366)
T ss_dssp ETTEEEEEEECGGGCEEEEEEEE---------CSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE
T ss_pred CCCEEEEEEcCCCcEEEeeeecc---------ccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec
Confidence 36799999999888877776543 11122789999999932 569999999999999999999988888
Q ss_pred cCCCCEEEEEEec-CCcEEEEeC-CCcEEEEEccCCCeEEEEE---eccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 82 NHGSPVESVLCLP-SGGIFVTGG-GLDVCIWDMLGGGKLLHKF---TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 82 ~~~~~v~~~~~~~-~~~~l~~~~-~~~i~~~d~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
.|...|.+++|+| ++.++++++ |+.|++||++ .++.+..+ ..|...|.+++|+|++++|++++.|+.|++||++
T Consensus 113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ-TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT-TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee-cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 5999999999999 899999988 8999999998 77888887 6899999999999999999999999999999987
Q ss_pred -cce------------------------------------------------EeeeecceeEEEEEccCCC---------
Q psy11036 157 -LKT------------------------------------------------VSSFTGGLDVCIWDMLGGG--------- 178 (239)
Q Consensus 157 -~~~------------------------------------------------~~~~~~~~~i~~~d~~~~~--------- 178 (239)
.+. +.....++.+++||+.+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 271 (366)
T 3k26_A 192 SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPS 271 (366)
T ss_dssp SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTT
T ss_pred CCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccC
Confidence 221 1112345669999987643
Q ss_pred ----EEEEEEecccCcEEEEEEccC--CCeEEEEcCCceEEEEEccCCeee----EEec-C--CCCeeeeEecC
Q psy11036 179 ----KLLHKFTCHHKTVTSLCLASG--GKRLISASLDHHAKIYEMVNFSPV----HTLD-Y--PSPVLSIDVSM 239 (239)
Q Consensus 179 ----~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~~----~~~~-~--~~~v~~~~~sp 239 (239)
..+..+..|...|.+++|+|+ +++|++++.||.|++||+.++++. ..+. + ..+|++++|+|
T Consensus 272 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 345 (366)
T 3k26_A 272 ESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR 345 (366)
T ss_dssp CCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred CcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC
Confidence 457788899999999999999 999999999999999999987643 3555 3 68999999987
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=224.16 Aligned_cols=207 Identities=20% Similarity=0.258 Sum_probs=164.8
Q ss_pred CCCCEEEEeeCCCc--ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce---e
Q psy11036 5 LPILIVALWDIPSE--AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV---M 79 (239)
Q Consensus 5 ~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~---~ 79 (239)
+.|+.|++||+.++ +.+..+.+|. ..|.+++|+| ++++|++|+.|++|++||+.++... .
T Consensus 80 s~D~~v~iw~~~~~~~~~~~~~~~h~--------------~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 80 SFDATTCIWKKNQDDFECVTTLEGHE--------------NEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp ETTSCEEEEEECCC-EEEEEEECCCS--------------SCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred ECCCcEEEEEccCCCeEEEEEccCCC--------------CCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEE
Confidence 45899999998766 4577889998 9999999999 8999999999999999999876543 3
Q ss_pred ee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCe--EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEc
Q psy11036 80 SV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGK--LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 155 (239)
Q Consensus 80 ~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 155 (239)
.+ .|...|.+++|+|++.+|++++ |+.|++||.+ ..+ ....+.+|...|.+++|+|++++|++++.|++|++|+.
T Consensus 145 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~-~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE-EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEE-TTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEec-CCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 34 5889999999999999999998 8999999998 443 45678899999999999999999999999999999996
Q ss_pred c--c--------------ceE-----------------------eeeecceeEEEEEccCCC---E-----EEEEEeccc
Q psy11036 156 T--L--------------KTV-----------------------SSFTGGLDVCIWDMLGGG---K-----LLHKFTCHH 188 (239)
Q Consensus 156 ~--~--------------~~~-----------------------~~~~~~~~i~~~d~~~~~---~-----~~~~~~~h~ 188 (239)
. . +++ ....++..+++|+..... . ......+|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~ 303 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHS 303 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSS
T ss_pred ccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccccc
Confidence 3 1 111 111345669999976532 1 122235799
Q ss_pred CcEEEEEEccCC-CeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 189 KTVTSLCLASGG-KRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 189 ~~v~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
..|.+++|+|++ .+|++|+.||.|++|++.+++.+...+
T Consensus 304 ~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 304 QDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred CcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccccc
Confidence 999999999987 599999999999999999888765543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=229.40 Aligned_cols=217 Identities=15% Similarity=0.195 Sum_probs=184.2
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
+.||.|++||+.+++....+..+ ..+....|+| ++++|++|+.||.|++||+.+++....+ .|
T Consensus 75 ~~d~~v~i~d~~~~~~~~~~~~~---------------~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 138 (420)
T 3vl1_A 75 RLDGHDFLFNTIIRDGSKMLKRA---------------DYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQAH 138 (420)
T ss_dssp EETTEEEEEECCSEETTTTSCSC---------------CEEEEEEECS-SSCEEEEEETTSCEEEECTTSCEEEEETTSS
T ss_pred EcCCcEEEEEecccceeeEEecC---------------CceEEEEEec-CCCEEEEEECCCCEEEEeCCCcceeeecccc
Confidence 34799999999888776666655 3455557788 8999999999999999999988887776 79
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEe
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVS 161 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~ 161 (239)
...|.+++|+|+++++++++ |+.|++||++ .++.+..+.+|...|.+++|+|++++|++++.|+.|++||++ ++.+.
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 217 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH 217 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred cCccEEEEECCCCCEEEEEeCCCeEEEEeCC-CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence 99999999999999999998 7999999998 777888899999999999999999999999999999999998 54444
Q ss_pred eee----------------------------------------------cceeEEEEEccCCCEEEEEEecccCcEEEEE
Q psy11036 162 SFT----------------------------------------------GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLC 195 (239)
Q Consensus 162 ~~~----------------------------------------------~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~ 195 (239)
.+. .++.+++||+++..........|...|.+++
T Consensus 218 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 297 (420)
T 3vl1_A 218 TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLT 297 (420)
T ss_dssp EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEE
T ss_pred EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEE
Confidence 332 2345999999986666655567889999999
Q ss_pred EccCCC-eEEEEcCCceEEEEEccCCee-eEEec--CCCCeeeeEec
Q psy11036 196 LASGGK-RLISASLDHHAKIYEMVNFSP-VHTLD--YPSPVLSIDVS 238 (239)
Q Consensus 196 ~s~~~~-~l~s~s~d~~i~iwd~~~~~~-~~~~~--~~~~v~~~~~s 238 (239)
|+|+++ +|++++.||.|++||+++++. +..+. +..++.++.|+
T Consensus 298 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 344 (420)
T 3vl1_A 298 VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA 344 (420)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE
T ss_pred EeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC
Confidence 999998 999999999999999998754 66665 66788888765
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-35 Score=243.75 Aligned_cols=200 Identities=18% Similarity=0.283 Sum_probs=176.9
Q ss_pred CCCCCEEEEeeCCCc-----ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce
Q psy11036 4 DLPILIVALWDIPSE-----AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV 78 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~ 78 (239)
.+.|+.|++||+.+. .....+.+|. ..|.+++|+| ++++|++|+.|++|++||+.+++..
T Consensus 401 ~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~--------------~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~ 465 (694)
T 3dm0_A 401 ASRDKSIILWKLTKDDKAYGVAQRRLTGHS--------------HFVEDVVLSS-DGQFALSGSWDGELRLWDLAAGVST 465 (694)
T ss_dssp EETTSEEEEEECCCSTTCSCEEEEEEECCS--------------SCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EeCCCcEEEEEccCCCcccccccceecCCC--------------CcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcce
Confidence 367899999998763 3456788898 9999999999 8999999999999999999999888
Q ss_pred eee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEE---eccCCceEEEEEcCCC--CEEEEEecCCeEE
Q psy11036 79 MSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKF---TCHHKTVTSLCLASGG--KRLISASLDHHAK 151 (239)
Q Consensus 79 ~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~---~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~ 151 (239)
..+ .|...|.+++|+|+++.+++++ |+.|++||+. ........ .+|...|.+++|+|++ ..+++++.|+.|+
T Consensus 466 ~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~ 544 (694)
T 3dm0_A 466 RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544 (694)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC-CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEE
Confidence 877 7999999999999999999998 8999999986 33322222 3688899999999987 5799999999999
Q ss_pred EEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCC
Q psy11036 152 IYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSP 231 (239)
Q Consensus 152 i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~ 231 (239)
+||++ ..+....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+.....
T Consensus 545 vwd~~--------------------~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~ 604 (694)
T 3dm0_A 545 VWNLS--------------------NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV 604 (694)
T ss_dssp EEETT--------------------TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSC
T ss_pred EEECC--------------------CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCc
Confidence 99998 4566677789999999999999999999999999999999999999999998889
Q ss_pred eeeeEecC
Q psy11036 232 VLSIDVSM 239 (239)
Q Consensus 232 v~~~~~sp 239 (239)
+.+++|+|
T Consensus 605 v~~~~~sp 612 (694)
T 3dm0_A 605 IHALCFSP 612 (694)
T ss_dssp EEEEEECS
T ss_pred EEEEEEcC
Confidence 99999987
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=223.99 Aligned_cols=217 Identities=22% Similarity=0.340 Sum_probs=167.2
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccc----eeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVP----LMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
.++.+++|++.+++.+..+..+......+ ..........|++++|+| ++++|++|+.|++|++||+.+++.+..+
T Consensus 83 ~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~ 161 (393)
T 1erj_A 83 CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMIL 161 (393)
T ss_dssp CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred cCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 46899999999999888887654110000 000011123599999999 8999999999999999999999888877
Q ss_pred -cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEEcc-c
Q psy11036 82 -NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMT-L 157 (239)
Q Consensus 82 -~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~-~ 157 (239)
.|...|.+++|+|++..+++++ |+.|++||++ .++....+. +...+.+++|+| ++++|++++.|+.|++||++ +
T Consensus 162 ~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~ 239 (393)
T 1erj_A 162 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239 (393)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC
T ss_pred ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC-CCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 6999999999999999999988 8999999998 677776665 667899999999 89999999999999999998 3
Q ss_pred ceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCe------------eeEE
Q psy11036 158 KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFS------------PVHT 225 (239)
Q Consensus 158 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~------------~~~~ 225 (239)
..+..+ ........+|...|.+++|+|++++|++++.|+.|++||+.+.. +...
T Consensus 240 ~~~~~~--------------~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~ 305 (393)
T 1erj_A 240 FLVERL--------------DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 305 (393)
T ss_dssp CEEEEE--------------C------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred cEEEee--------------cccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEE
Confidence 333333 11112235799999999999999999999999999999997632 3344
Q ss_pred ec-CCCCeeeeEecC
Q psy11036 226 LD-YPSPVLSIDVSM 239 (239)
Q Consensus 226 ~~-~~~~v~~~~~sp 239 (239)
+. |...|.+++|+|
T Consensus 306 ~~~h~~~v~~~~~~~ 320 (393)
T 1erj_A 306 YIGHKDFVLSVATTQ 320 (393)
T ss_dssp EECCSSCEEEEEECG
T ss_pred EecccCcEEEEEECC
Confidence 44 778899999975
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=235.54 Aligned_cols=215 Identities=16% Similarity=0.193 Sum_probs=168.1
Q ss_pred CCCCEEEEeeCCCc--ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC---cee
Q psy11036 5 LPILIVALWDIPSE--AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD---PVM 79 (239)
Q Consensus 5 ~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~---~~~ 79 (239)
+.||.|++||+.++ +.+..+.+|. ..|.+++|+| ++++|++++.|++|++||+.+++ ...
T Consensus 30 ~~d~~i~iw~~~~~~~~~~~~~~~h~--------------~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~ 94 (377)
T 3dwl_C 30 TATNQVELYEQDGNGWKHARTFSDHD--------------KIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTL 94 (377)
T ss_dssp CSSSCBCEEEEETTEEEECCCBCCCS--------------SCEEEEEECT-TTCCEEEEETTSSEEEC------CCCCEE
T ss_pred cCCCEEEEEEccCCceEEEEEEecCC--------------ceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCceeeee
Confidence 46899999999988 7788899998 9999999999 78999999999999999999877 444
Q ss_pred ee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCe---EEEEEec-cCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy11036 80 SV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGK---LLHKFTC-HHKTVTSLCLASGGKRLISASLDHHAKIY 153 (239)
Q Consensus 80 ~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~---~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 153 (239)
.+ .|...|.+++|+|+++++++++ |+.|++||++ ..+ ....+.. |...|.+++|+|++++|++++.|+.|++|
T Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw 173 (377)
T 3dwl_C 95 VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE-QENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVL 173 (377)
T ss_dssp ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEE
T ss_pred EecccCCceEEEEECCCCCEEEEEecCCeEEEEEEC-CcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 44 6899999999999999999988 7999999998 444 4667777 99999999999999999999999999999
Q ss_pred EcccceEeeeecceeEEEEEcc-CCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCee----eEEec-
Q psy11036 154 EMTLKTVSSFTGGLDVCIWDML-GGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSP----VHTLD- 227 (239)
Q Consensus 154 d~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~----~~~~~- 227 (239)
|++...+.... ....|..+ ...+++..+ +|...|.+++|+|++++|++++.||.|++||+.+++. +..+.
T Consensus 174 d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 249 (377)
T 3dwl_C 174 SAYVRDVDAKP---EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKL 249 (377)
T ss_dssp EECCSSCC-CC---CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEEC
T ss_pred EEEecccCCCc---cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecC
Confidence 98611100000 00000000 013445555 8999999999999999999999999999999999887 66666
Q ss_pred CCCCeeeeEecC
Q psy11036 228 YPSPVLSIDVSM 239 (239)
Q Consensus 228 ~~~~v~~~~~sp 239 (239)
+..+|.+++|+|
T Consensus 250 ~~~~v~~~~~s~ 261 (377)
T 3dwl_C 250 SQLPLRSLLWAN 261 (377)
T ss_dssp SSSCEEEEEEEE
T ss_pred CCCceEEEEEcC
Confidence 778999999986
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=223.22 Aligned_cols=200 Identities=19% Similarity=0.289 Sum_probs=165.5
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee---
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--- 81 (239)
+.|+.|++||+++++.+..+.+|. ..|.+++|+| ++++|++++.|++|++||+.........
T Consensus 95 s~D~~v~lwd~~~~~~~~~~~~h~--------------~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 159 (343)
T 2xzm_R 95 SWDKTLRLWDLRTGTTYKRFVGHQ--------------SEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKE 159 (343)
T ss_dssp ETTSEEEEEETTSSCEEEEEECCC--------------SCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTT
T ss_pred cCCCcEEEEECCCCcEEEEEcCCC--------------CcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeeccc
Confidence 468999999999999999999999 9999999999 8999999999999999999743322222
Q ss_pred cCCCCEEEEEEecCC----------cEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeE
Q psy11036 82 NHGSPVESVLCLPSG----------GIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 150 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~----------~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 150 (239)
.|...|.+++|+|++ .++++++ |+.|++||. ..+....+.+|...|.+++|+|+|++|++++.|+.|
T Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v 237 (343)
T 2xzm_R 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT--NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL 237 (343)
T ss_dssp SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET--TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC--CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeE
Confidence 478889999999986 6788887 899999995 567788889999999999999999999999999999
Q ss_pred EEEEcc--cceEeee--------------------ecceeEEEEEccCCCE-EEEEEe-----------cccCcEEEEEE
Q psy11036 151 KIYEMT--LKTVSSF--------------------TGGLDVCIWDMLGGGK-LLHKFT-----------CHHKTVTSLCL 196 (239)
Q Consensus 151 ~i~d~~--~~~~~~~--------------------~~~~~i~~~d~~~~~~-~~~~~~-----------~h~~~v~~~~~ 196 (239)
++||+. ......+ ..+..+++||+.+... .+..+. +|...|.+++|
T Consensus 238 ~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (343)
T 2xzm_R 238 LIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317 (343)
T ss_dssp EEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred EEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence 999994 2211111 1234599999876432 122332 67888999999
Q ss_pred ccCCCeEEEEcCCceEEEEEccCCe
Q psy11036 197 ASGGKRLISASLDHHAKIYEMVNFS 221 (239)
Q Consensus 197 s~~~~~l~s~s~d~~i~iwd~~~~~ 221 (239)
+|+|++|++|+.||.|++|++++++
T Consensus 318 sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 318 NALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CCCCCeEEEecCCceEEEEEEEccC
Confidence 9999999999999999999987654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=228.77 Aligned_cols=218 Identities=15% Similarity=0.212 Sum_probs=180.5
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
+.||.|++||+++++....+..|. +.|++++|+| ++++|++++.|+.|++||+.+++.+..+ .|
T Consensus 116 ~~dg~i~iwd~~~~~~~~~~~~h~--------------~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 180 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQREIDQAHV--------------SEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180 (420)
T ss_dssp ETTSCEEEECTTSCEEEEETTSSS--------------SCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECC
T ss_pred ECCCCEEEEeCCCcceeeeccccc--------------CccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCC
Confidence 468999999999999888888998 9999999999 7899999999999999999999888888 69
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEec---cCCceEE---------------------EEEcCCC
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTC---HHKTVTS---------------------LCLASGG 138 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~---~~~~i~~---------------------i~~~~~~ 138 (239)
...|.+++|+|+++++++++ |+.|++||++ .++.+..+.. +...+.+ ++|+|++
T Consensus 181 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (420)
T 3vl1_A 181 RATVTDIAIIDRGRNVLSASLDGTIRLWECG-TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG 259 (420)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcEEEeECC-CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence 99999999999999999988 8999999998 7888888874 3334444 4557899
Q ss_pred CEEEEEecCCeEEEEEcc-cceEeee------------------------ecceeEEEEEccCCCEEEEEEec-ccCcEE
Q psy11036 139 KRLISASLDHHAKIYEMT-LKTVSSF------------------------TGGLDVCIWDMLGGGKLLHKFTC-HHKTVT 192 (239)
Q Consensus 139 ~~l~~~~~d~~i~i~d~~-~~~~~~~------------------------~~~~~i~~~d~~~~~~~~~~~~~-h~~~v~ 192 (239)
++|++++.||.|++||++ .+.+..+ ..++.+++||+++...++..+.. |...|.
T Consensus 260 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 339 (420)
T 3vl1_A 260 KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPIN 339 (420)
T ss_dssp EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCce
Confidence 999999999999999997 4433322 23456999999987666777776 667788
Q ss_pred EEEEccCCCeEEEEcCCceEEEEEccCC----------eeeEEecCCCCeeeeEecC
Q psy11036 193 SLCLASGGKRLISASLDHHAKIYEMVNF----------SPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 193 ~~~~s~~~~~l~s~s~d~~i~iwd~~~~----------~~~~~~~~~~~v~~~~~sp 239 (239)
++.+ +++++|++++.|+.|++|++... .+.....+...|.+++|+|
T Consensus 340 ~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 395 (420)
T 3vl1_A 340 NVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVS 395 (420)
T ss_dssp EEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC
T ss_pred EEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEcc
Confidence 7754 67889999999999999999763 2222333777899999987
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=215.96 Aligned_cols=200 Identities=17% Similarity=0.251 Sum_probs=171.3
Q ss_pred CCCCEEEEeeCCCcceeeeeeC--CceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 5 LPILIVALWDIPSEAQVSTFTN--HTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
|.|++|+|||+++++.++.+.. |. ..|++++|+| ++++|++|+.||+|++||+++++.+..+
T Consensus 42 g~D~tV~iWd~~tg~~~~~~~~~~~~--------------~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~ 106 (318)
T 4ggc_A 42 ALDNSVYLWSASSGDILQLLQMEQPG--------------EYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMT 106 (318)
T ss_dssp EETTEEEEEETTTCCEEEEEECCSTT--------------CCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EeCCEEEEEECCCCCEEEEEEecCCC--------------CeEEEEEECC-CCCEEEEEECCCcEEEeecCCceeEEEec
Confidence 4589999999999998887764 55 7899999999 8999999999999999999999988887
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cce
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 159 (239)
.|...+.++.+ ++..+++++ ++.+.+|+.......+..+.+|...+..+.++++++++++++.|+.|++||++ ++.
T Consensus 107 ~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 107 SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 67887776655 467888888 79999999986777888899999999999999999999999999999999986 221
Q ss_pred Ee--------------ee--------------------------------------------------------e--cce
Q psy11036 160 VS--------------SF--------------------------------------------------------T--GGL 167 (239)
Q Consensus 160 ~~--------------~~--------------------------------------------------------~--~~~ 167 (239)
.. .+ + .++
T Consensus 185 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~ 264 (318)
T 4ggc_A 185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQN 264 (318)
T ss_dssp BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTC
T ss_pred cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCC
Confidence 00 00 1 235
Q ss_pred eEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCee
Q psy11036 168 DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 168 ~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
.|++||+++ ++++..+.+|.+.|++++|+|++++|+|||.||+|+|||+....|
T Consensus 265 ~i~iwd~~~-~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 265 QLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp CEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCCC
T ss_pred EEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Confidence 599999886 678889999999999999999999999999999999999977653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=214.27 Aligned_cols=186 Identities=22% Similarity=0.334 Sum_probs=169.2
Q ss_pred cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCC
Q psy11036 18 EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSG 96 (239)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~ 96 (239)
.....++.+|. +.|++++|+| ++++|++++.||.|++|++.+++....+ .|...|.+++|+|++
T Consensus 13 ~~~~~~~~gh~--------------~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 13 YALKFTLAGHT--------------KAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77 (312)
T ss_dssp CEEEEEECCCS--------------SCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred ceeEEEEcccC--------------CcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC
Confidence 34556777887 9999999999 8999999999999999999999888877 689999999999999
Q ss_pred cEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEcc
Q psy11036 97 GIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDML 175 (239)
Q Consensus 97 ~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~ 175 (239)
+++++++ |+.|++||++ .++.+..+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus 78 ~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~------------------- 137 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK------------------- 137 (312)
T ss_dssp SEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-------------------
T ss_pred CEEEEECCCCEEEEEECC-CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-------------------
Confidence 9999998 8999999998 788889999999999999999999999999999999999988
Q ss_pred CCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec--CCCCeeeeEecC
Q psy11036 176 GGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 176 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp 239 (239)
..+.+..+..|..+|.+++|+|++++|++++.||.|++||+++++.+..+. +..++..++|+|
T Consensus 138 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (312)
T 4ery_A 138 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202 (312)
T ss_dssp -TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT
T ss_pred -CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC
Confidence 456666778899999999999999999999999999999999999888775 556899999987
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=219.24 Aligned_cols=216 Identities=18% Similarity=0.204 Sum_probs=186.3
Q ss_pred CCCCEEEEeeCCCcceeeeeeC-CceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c
Q psy11036 5 LPILIVALWDIPSEAQVSTFTN-HTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~ 82 (239)
+.||.|++||+.+++....+.. |. ..|++++|+| ++++|++|+.||.|++||+.+++.+..+ .
T Consensus 110 ~~d~~v~lw~~~~~~~~~~~~~~~~--------------~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 174 (401)
T 4aez_A 110 ALERNVYVWNADSGSVSALAETDES--------------TYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLRTMAG 174 (401)
T ss_dssp EETTEEEEEETTTCCEEEEEECCTT--------------CCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ECCCeEEEeeCCCCcEeEeeecCCC--------------CCEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEEEEecC
Confidence 4689999999999998887776 66 8999999999 8999999999999999999999988888 6
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceE
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTV 160 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~ 160 (239)
|...|.+++|+ +..+++++ |+.|++||++........+..|...|.+++|+|++++|++++.|+.|++||++ .+.+
T Consensus 175 ~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 252 (401)
T 4aez_A 175 HQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK 252 (401)
T ss_dssp CSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE
T ss_pred CCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc
Confidence 99999999995 56888887 89999999986677888899999999999999999999999999999999998 4444
Q ss_pred eee---------------------e----cceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEE--EcCCceEE
Q psy11036 161 SSF---------------------T----GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLIS--ASLDHHAK 213 (239)
Q Consensus 161 ~~~---------------------~----~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s--~s~d~~i~ 213 (239)
..+ + .++.+++||+.+ ++++..+. +...|.+++|+|++++|++ |+.||.|+
T Consensus 253 ~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~ 330 (401)
T 4aez_A 253 FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330 (401)
T ss_dssp EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEE
T ss_pred EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEE
Confidence 433 1 156799999987 55666665 5678999999999999998 45899999
Q ss_pred EEEccCCeeeEE--ec-CCCCeeeeEecC
Q psy11036 214 IYEMVNFSPVHT--LD-YPSPVLSIDVSM 239 (239)
Q Consensus 214 iwd~~~~~~~~~--~~-~~~~v~~~~~sp 239 (239)
+||+.+++.... +. +...|.+++|+|
T Consensus 331 v~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 359 (401)
T 4aez_A 331 IWSYSSSGLTKQVDIPAHDTRVLYSALSP 359 (401)
T ss_dssp EEEEETTEEEEEEEEECCSSCCCEEEECT
T ss_pred EEecCCccceeEEEecCCCCCEEEEEECC
Confidence 999999766554 33 788999999987
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-34 Score=218.88 Aligned_cols=206 Identities=17% Similarity=0.155 Sum_probs=159.6
Q ss_pred CCCCEEEEeeCCC-------cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC--
Q psy11036 5 LPILIVALWDIPS-------EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP-- 75 (239)
Q Consensus 5 ~~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~-- 75 (239)
+.|+.|+|||++. .+.+..+.+|. +.|.+++|+| ++++|++|+.|++|++||++..
T Consensus 77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~--------------~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHE--------------NEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp ETTSCEEEEEC-------CCCEEEEEEC------------------CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCC
T ss_pred eCCCcEEEEEcccCcCccccceeEEEEcCCC--------------CcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCC
Confidence 4689999999853 34567788898 9999999999 8999999999999999999532
Q ss_pred --Cceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCC--eEEEEEeccCCceEEEEEcCC--CCEEEEEecC
Q psy11036 76 --DPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGG--KLLHKFTCHHKTVTSLCLASG--GKRLISASLD 147 (239)
Q Consensus 76 --~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~--~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d 147 (239)
+++..+ .|...|.+++|+|++.+|++++ |+.|++||.+ .. +.+..+.+|...|.+++|+|+ +..|++++.|
T Consensus 142 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D 220 (330)
T 2hes_X 142 EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY-DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD 220 (330)
T ss_dssp CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEE-TTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT
T ss_pred CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC-CCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC
Confidence 234455 6899999999999999999998 8999999987 44 577889999999999999998 6789999999
Q ss_pred CeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec-ccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCe--eeE
Q psy11036 148 HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC-HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFS--PVH 224 (239)
Q Consensus 148 ~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~--~~~ 224 (239)
++|++||++..... +. ........+.. |...|.+++|++++ +|++++.||.|++||..+++ .+.
T Consensus 221 ~~v~iw~~~~~~~~---~~---------~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 221 STVRVWKYMGDDED---DQ---------QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFA 287 (330)
T ss_dssp SCEEEEEEEEECTT---SC---------EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEE
T ss_pred CeEEEEEecCCCcc---cc---------ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEe
Confidence 99999998711000 00 00122333444 88999999999765 89999999999999998874 343
Q ss_pred Ee-c-CCC-CeeeeEecC
Q psy11036 225 TL-D-YPS-PVLSIDVSM 239 (239)
Q Consensus 225 ~~-~-~~~-~v~~~~~sp 239 (239)
.. . |.. .|++++|+|
T Consensus 288 ~~~~~h~~~~v~~v~~~~ 305 (330)
T 2hes_X 288 KRALCHGVYEINVVKWLE 305 (330)
T ss_dssp EESCTTTTSCEEEEEEC-
T ss_pred ccccccccceEEEEEEec
Confidence 33 2 665 899999986
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=224.99 Aligned_cols=181 Identities=18% Similarity=0.267 Sum_probs=157.3
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee---
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--- 81 (239)
+.||.|++||+++++.+..+.+|. ..|++++|+|++..++++++.|++|++||++++++...+
T Consensus 158 s~dg~v~iwd~~~~~~~~~~~~h~--------------~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~ 223 (357)
T 4g56_B 158 GKDFSVKVWDLSQKAVLKSYNAHS--------------SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223 (357)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCS--------------SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred eCCCeEEEEECCCCcEEEEEcCCC--------------CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence 468999999999999999999999 999999999955568999999999999999998877655
Q ss_pred cCCCCEEEEEEecC-CcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEEcccc
Q psy11036 82 NHGSPVESVLCLPS-GGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMTLK 158 (239)
Q Consensus 82 ~~~~~v~~~~~~~~-~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~ 158 (239)
.+...+.+++|+|+ +.++++++ |+.|++||++ .++.+..+..|...|++++|+|++ ++|++++.|++|+|||++
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~-- 300 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK-NPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDAD-- 300 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS-CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT--
T ss_pred cccccccchhhhhcccceEEEeecccceeEEECC-CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC--
Confidence 36778999999997 45777776 7999999998 778888999999999999999987 579999999999999988
Q ss_pred eEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEcCCceEEEEEccCCe
Q psy11036 159 TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMVNFS 221 (239)
Q Consensus 159 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~ 221 (239)
.++++. ..+|...|++++|+| ++++|+|++.||+|++|++.+..
T Consensus 301 ------------------~~~~~~-~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 301 ------------------FSEVFR-DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ------------------SCEEEE-ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred ------------------CCcEeE-ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 344443 347999999999999 79999999999999999996643
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=225.07 Aligned_cols=182 Identities=25% Similarity=0.424 Sum_probs=157.8
Q ss_pred CCCCEEEEeeCCCcceeeee-----eCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCC-CCCce
Q psy11036 5 LPILIVALWDIPSEAQVSTF-----TNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTR-SPDPV 78 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~ 78 (239)
+.|+.|++||+.+++.+..+ .+|. ..|.+++|++.++++|++|+.|++|++||++ ..+.+
T Consensus 177 s~D~~i~~wd~~~~~~~~~~~~~~~~~h~--------------~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~ 242 (380)
T 3iz6_a 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHT--------------ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV 242 (380)
T ss_dssp CTTSCEEEECTTTCCEEEEECCCSSSSCC--------------SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC
T ss_pred CCCCcEEEEEcCCCcEEEEeecccCCCCc--------------cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce
Confidence 57899999999999988877 4566 8999999988678999999999999999998 44666
Q ss_pred eee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCC-------ceEEEEEcCCCCEEEEEecCCe
Q psy11036 79 MSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHK-------TVTSLCLASGGKRLISASLDHH 149 (239)
Q Consensus 79 ~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~-------~i~~i~~~~~~~~l~~~~~d~~ 149 (239)
..+ .|...|.+++|+|+++++++++ |+.|++||++ .++.+..+..+.. .|++++|+|+|++|++|+.||.
T Consensus 243 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 321 (380)
T 3iz6_a 243 RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR-TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321 (380)
T ss_dssp EEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT-TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred EEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC-CCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence 666 6999999999999999999999 8999999999 7777777765432 4899999999999999999999
Q ss_pred EEEEEcccceEeeeecceeEEEEEccCCCEEEEEE----ecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCe
Q psy11036 150 AKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKF----TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFS 221 (239)
Q Consensus 150 i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~ 221 (239)
|++||+. ..+....+ .+|.+.|.+++|+|+|++|++|+.|+.|++|++...+
T Consensus 322 i~vwd~~--------------------~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 322 CYVWDTL--------------------LAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEEETT--------------------TCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEECC--------------------CCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999987 23333333 5799999999999999999999999999999997654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-34 Score=221.13 Aligned_cols=177 Identities=12% Similarity=0.126 Sum_probs=149.1
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee---c
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV---N 82 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---~ 82 (239)
.|++|+|||+++++++..+. |. ..|.+++|+| +++++++++.+ .+++|+..+++..... .
T Consensus 155 ~d~~i~iwd~~~~~~~~~~~-~~--------------~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~ 217 (365)
T 4h5i_A 155 VPAIMRIIDPSDLTEKFEIE-TR--------------GEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFD 217 (365)
T ss_dssp SSCEEEEEETTTTEEEEEEE-CS--------------SCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCC
T ss_pred CCCEEEEeECCCCcEEEEeC-CC--------------CceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCC
Confidence 47899999999999988886 54 7899999999 89999998865 5677777777665433 4
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CC----cEEEEEccCCCe---EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEE
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GL----DVCIWDMLGGGK---LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 154 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~----~i~~~d~~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d 154 (239)
|...+.+++|+|+++.+++++ ++ .+.+|++..... ....+..|..+|++++|+|+|++||+|+.|++|+|||
T Consensus 218 ~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd 297 (365)
T 4h5i_A 218 KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVK 297 (365)
T ss_dssp TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEE
Confidence 788899999999999999887 54 578888873222 2345678999999999999999999999999999999
Q ss_pred cccceEeeeecceeEEEEEccCCCEEEEEE-ecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 155 MTLKTVSSFTGGLDVCIWDMLGGGKLLHKF-TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
++ ..+++..+ .+|..+|++++|+|||++|||||.|++|+|||+..
T Consensus 298 ~~--------------------~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 298 LK--------------------DLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TT--------------------TTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CC--------------------CCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 88 46666654 68999999999999999999999999999999954
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=223.43 Aligned_cols=220 Identities=15% Similarity=0.155 Sum_probs=185.1
Q ss_pred CCCCCCEEEEeeCCCcc------eeeeeeCCceeeccceeeccCCCCCeEEEEEecCC----C---CEEEEeeCCCeEEE
Q psy11036 3 HDLPILIVALWDIPSEA------QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVS----S---DIVISGSYDKTVNV 69 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~---~~l~s~~~dg~v~v 69 (239)
..+.||.|++||+.+++ .+..+..|. ..|.+++|+| + + ++|++++.|+.|++
T Consensus 31 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~--------------~~v~~~~~~~-~~~~~g~~~~~l~s~~~dg~i~i 95 (397)
T 1sq9_A 31 SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK--------------SGLHHVDVLQ-AIERDAFELCLVATTSFSGDLLF 95 (397)
T ss_dssp EEETTSEEEEEESBCCTTCCGGGGEEEEECCT--------------TCEEEEEEEE-EEETTTEEEEEEEEEETTSCEEE
T ss_pred EEcCCCEEEEEECCCcccccCCCcceEEecCC--------------CcEEEEEEec-ccccCCccccEEEEEcCCCCEEE
Confidence 34679999999999887 788888998 9999999999 6 8 89999999999999
Q ss_pred EeCCCCCc-----eeee-cC-----CCCEEEEEEe----cCCcE-EEEeC-CCcEEEEEccCC-----CeEEE-----EE
Q psy11036 70 YDTRSPDP-----VMSV-NH-----GSPVESVLCL----PSGGI-FVTGG-GLDVCIWDMLGG-----GKLLH-----KF 122 (239)
Q Consensus 70 w~~~~~~~-----~~~~-~~-----~~~v~~~~~~----~~~~~-l~~~~-~~~i~~~d~~~~-----~~~~~-----~~ 122 (239)
||+.+++. ...+ .| ...|.+++|+ |++.. +++++ ++.|++||++.. .+.+. .+
T Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (397)
T 1sq9_A 96 YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 175 (397)
T ss_dssp EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEE
T ss_pred EEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCccee
Confidence 99998886 6666 46 4899999999 99999 88887 899999999830 33333 55
Q ss_pred -------eccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee----------------------------ecc
Q psy11036 123 -------TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF----------------------------TGG 166 (239)
Q Consensus 123 -------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~----------------------------~~~ 166 (239)
..|...|.+++|+|++ .+++++.|+.|++||++ .+.+..+ ..+
T Consensus 176 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d 254 (397)
T 1sq9_A 176 QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254 (397)
T ss_dssp EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred eeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecC
Confidence 4488999999999999 99999999999999997 3332211 123
Q ss_pred ---eeEEEEEccCCCEEEEEEec-------------ccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec---
Q psy11036 167 ---LDVCIWDMLGGGKLLHKFTC-------------HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD--- 227 (239)
Q Consensus 167 ---~~i~~~d~~~~~~~~~~~~~-------------h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--- 227 (239)
+.|++||+++ .+++..+.. |...|.+++|+|++++|++++.||.|++||+.+++++..+.
T Consensus 255 ~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 333 (397)
T 1sq9_A 255 NSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 333 (397)
T ss_dssp TTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred CCCceEEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEeccc
Confidence 6799999987 577778888 99999999999999999999999999999999999999887
Q ss_pred ----C---------------CCCeeeeEecC
Q psy11036 228 ----Y---------------PSPVLSIDVSM 239 (239)
Q Consensus 228 ----~---------------~~~v~~~~~sp 239 (239)
+ ..+|++++|+|
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 364 (397)
T 1sq9_A 334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 364 (397)
T ss_dssp GGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC
T ss_pred CcccchhhhhccccccccccCCceeEEEecc
Confidence 4 78999999987
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=219.36 Aligned_cols=215 Identities=15% Similarity=0.230 Sum_probs=176.5
Q ss_pred EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCC--CCEEEEeeCCCeEEEEeCCC-CCce-eee-cC
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVS--SDIVISGSYDKTVNVYDTRS-PDPV-MSV-NH 83 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~v~vw~~~~-~~~~-~~~-~~ 83 (239)
....++....+.+..+.+|. +.|++++|+|++ +++|++|+.||.|++||+.+ +... ..+ .|
T Consensus 20 ~~~~~~~~~~~~~~~~~~h~--------------~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h 85 (368)
T 3mmy_A 20 SATTDNHNPMKDIEVTSSPD--------------DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH 85 (368)
T ss_dssp ---CCSSCTTCCEECSSCCS--------------SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEEC
T ss_pred EeccCCCCCcceeEeccCCC--------------CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccc
Confidence 33445666667778888888 999999999943 69999999999999999987 5544 344 69
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEE--cCCCCEEEEEecCCeEEEEEcc-cce
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL--ASGGKRLISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~d~~i~i~d~~-~~~ 159 (239)
...|.+++|+|++++|++++ |+.|++||++ .++... +..|...|.+++| +|++++|++++.|+.|++||++ .+.
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLS-SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred cCCEEEEEECcCCCEEEEEcCCCcEEEEEcC-CCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence 99999999999999999988 8999999998 666554 5669999999999 8999999999999999999987 332
Q ss_pred Eeee-------------------------------------------------------------------ecceeEEEE
Q psy11036 160 VSSF-------------------------------------------------------------------TGGLDVCIW 172 (239)
Q Consensus 160 ~~~~-------------------------------------------------------------------~~~~~i~~~ 172 (239)
+..+ ..++.+++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 164 MMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp SEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred EEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 2211 223447778
Q ss_pred EccCCC--EEEEEEecccC------------cEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEe
Q psy11036 173 DMLGGG--KLLHKFTCHHK------------TVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDV 237 (239)
Q Consensus 173 d~~~~~--~~~~~~~~h~~------------~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 237 (239)
|+.... .....+.+|.. +|.+++|+|++++|++++.||.|++||+.+++++..+. +..+|.+++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 323 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323 (368)
T ss_dssp ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEE
T ss_pred ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEE
Confidence 776542 34556666665 79999999999999999999999999999999999998 7889999999
Q ss_pred cC
Q psy11036 238 SM 239 (239)
Q Consensus 238 sp 239 (239)
+|
T Consensus 324 s~ 325 (368)
T 3mmy_A 324 NH 325 (368)
T ss_dssp CT
T ss_pred CC
Confidence 97
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=228.02 Aligned_cols=213 Identities=26% Similarity=0.416 Sum_probs=186.9
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
+.|+.|++||. +++....+.+|. ..|.+++|+| +++.+++++.|++|++||..... ...+ .|
T Consensus 281 ~~d~~i~~w~~-~~~~~~~~~~h~--------------~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~-~~~~~~~ 343 (577)
T 2ymu_A 281 SDDKTVKLWNR-NGQLLQTLTGHS--------------SSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQH-LQTLTGH 343 (577)
T ss_dssp ETTSCEEEEET-TSCEEEEECCCS--------------SCEEEEEECT-TSSEEEEEETTSCEEEEETTSCE-EEEECCC
T ss_pred eCCCEEEEEeC-CCcEEEEEecCC--------------CCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe-eEEEeCC
Confidence 36799999996 567788899998 9999999999 89999999999999999986554 4444 78
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEee
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSS 162 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 162 (239)
...+.+++|+|+++.+++++ ++.+++||. .++.+..+.+|...|.+++|+|++++|++++.|+.|++||..++.+..
T Consensus 344 ~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~ 421 (577)
T 2ymu_A 344 SSSVWGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 421 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEET--TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEcC--CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEE
Confidence 89999999999999999988 799999996 577888999999999999999999999999999999999977554444
Q ss_pred e----------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCC
Q psy11036 163 F----------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNF 220 (239)
Q Consensus 163 ~----------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~ 220 (239)
+ ..++.+++||.. .+.+..+.+|...|.+++|+|++++|++++.|+.|++||. ++
T Consensus 422 ~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~ 498 (577)
T 2ymu_A 422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 498 (577)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TS
T ss_pred ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC
Confidence 3 234569999963 5677888999999999999999999999999999999995 77
Q ss_pred eeeEEec-CCCCeeeeEecC
Q psy11036 221 SPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 221 ~~~~~~~-~~~~v~~~~~sp 239 (239)
+++..+. |...|++++|+|
T Consensus 499 ~~~~~~~~h~~~v~~l~~s~ 518 (577)
T 2ymu_A 499 QLLQTLTGHSSSVRGVAFSP 518 (577)
T ss_dssp CEEEEEECCSSCEEEEEECT
T ss_pred CEEEEEeCCCCCEEEEEEcC
Confidence 8888887 888999999997
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=223.18 Aligned_cols=204 Identities=20% Similarity=0.238 Sum_probs=165.7
Q ss_pred CCCCEEEEeeCCCcc--eeeeeeCCceeeccceeeccCCCCCeEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCC--cee
Q psy11036 5 LPILIVALWDIPSEA--QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV-SSDIVISGSYDKTVNVYDTRSPD--PVM 79 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~v~vw~~~~~~--~~~ 79 (239)
+.|++|+|||+.+++ .+..+.+|. ++|.+++|++. ++++|++|+.|++|++||+++++ ...
T Consensus 32 s~D~~v~lwd~~~~~~~~~~~l~gH~--------------~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~ 97 (316)
T 3bg1_A 32 SSDRSVKIFDVRNGGQILIADLRGHE--------------GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH 97 (316)
T ss_dssp ETTTEEEEEEEETTEEEEEEEEECCS--------------SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE
T ss_pred eCCCeEEEEEecCCCcEEEEEEcCCC--------------ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE
Confidence 568999999998764 467889998 99999999852 47899999999999999998874 344
Q ss_pred ee-cCCCCEEEEEEecC--CcEEEEeC-CCcEEEEEccCCCe--EEEEEeccCCceEEEEEcCC----------------
Q psy11036 80 SV-NHGSPVESVLCLPS--GGIFVTGG-GLDVCIWDMLGGGK--LLHKFTCHHKTVTSLCLASG---------------- 137 (239)
Q Consensus 80 ~~-~~~~~v~~~~~~~~--~~~l~~~~-~~~i~~~d~~~~~~--~~~~~~~~~~~i~~i~~~~~---------------- 137 (239)
.+ .|...|.+++|+|+ +.++++++ |+.|++||++.... ....+.+|...+.+++|+|+
T Consensus 98 ~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 177 (316)
T 3bg1_A 98 EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPN 177 (316)
T ss_dssp EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCC
T ss_pred EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCcc
Confidence 45 68999999999997 78899988 89999999983322 23445678899999999997
Q ss_pred -CCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC----CeEEEEcCCceE
Q psy11036 138 -GKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG----KRLISASLDHHA 212 (239)
Q Consensus 138 -~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~s~d~~i 212 (239)
+++|++++.|+.|++||++.. ...++...+.+|...|.+++|+|++ ++|++++.|++|
T Consensus 178 ~~~~l~sgs~D~~v~lWd~~~~-----------------~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v 240 (316)
T 3bg1_A 178 YIKRFASGGCDNLIKLWKEEED-----------------GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240 (316)
T ss_dssp CCCBEECCBTTSBCCEEEECTT-----------------SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred ccceEEEecCCCeEEEEEeCCC-----------------CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence 478999999999999998610 0013555678999999999999986 789999999999
Q ss_pred EEEEccCC---e-eeEEe-cCCCCeeeeEecC
Q psy11036 213 KIYEMVNF---S-PVHTL-DYPSPVLSIDVSM 239 (239)
Q Consensus 213 ~iwd~~~~---~-~~~~~-~~~~~v~~~~~sp 239 (239)
++|++.+. + ....+ .+...|.+++|+|
T Consensus 241 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 272 (316)
T 3bg1_A 241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI 272 (316)
T ss_dssp EEEECSSTTCCCCBCCEEEECSSCEEEEEECT
T ss_pred EEEEccCccccchhhhhhhcCCCcEEEEEEcC
Confidence 99999763 1 12223 3788999999997
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=218.75 Aligned_cols=217 Identities=18% Similarity=0.205 Sum_probs=177.4
Q ss_pred CCCCEEEEeeCCCcc--eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 5 LPILIVALWDIPSEA--QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
+.|+.|++||+.+++ .+..+.+|. ..|.+++|+| ++++|++++.||.|++||+.+++....+
T Consensus 27 ~~d~~v~i~~~~~~~~~~~~~~~~h~--------------~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 91 (372)
T 1k8k_C 27 PNNHEVHIYEKSGNKWVQVHELKEHN--------------GQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLV 91 (372)
T ss_dssp CSSSEEEEEEEETTEEEEEEEEECCS--------------SCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred eCCCEEEEEeCCCCcEEeeeeecCCC--------------CcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEE
Confidence 468999999999887 888999998 9999999999 8999999999999999999888644433
Q ss_pred --cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCe--EEEE-EeccCCceEEEEEcCCCCEEEEEecCCeEEEEEc
Q psy11036 82 --NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGK--LLHK-FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 155 (239)
Q Consensus 82 --~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~--~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 155 (239)
.|...+.+++|+|+++++++++ ++.|++||++.... .... ...|...|.+++|+|++++|++++.|+.|++||+
T Consensus 92 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 92 ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence 5889999999999999999988 79999999984332 2233 3568899999999999999999999999999997
Q ss_pred ccceEeeeecceeEEEEEc-cCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCee
Q psy11036 156 TLKTVSSFTGGLDVCIWDM-LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVL 233 (239)
Q Consensus 156 ~~~~~~~~~~~~~i~~~d~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~ 233 (239)
+....... .....|.. ....+++..+..|...|.+++|+|++++|++++.|+.|++||+++++++..+. +..++.
T Consensus 172 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 248 (372)
T 1k8k_C 172 YIKEVEER---PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 248 (372)
T ss_dssp CCTTTSCC---CCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEE
T ss_pred cccccccc---ccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeE
Confidence 51100000 00000000 01256677778899999999999999999999999999999999999999998 677999
Q ss_pred eeEecC
Q psy11036 234 SIDVSM 239 (239)
Q Consensus 234 ~~~~sp 239 (239)
+++|+|
T Consensus 249 ~~~~~~ 254 (372)
T 1k8k_C 249 AVTFIT 254 (372)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999986
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=216.76 Aligned_cols=201 Identities=16% Similarity=0.261 Sum_probs=181.9
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
+.||.|++||+.+++.+..+..|. ..|.+++|+| ++++|++++.||.|++||+.+++....+.+.
T Consensus 51 ~~dg~i~vwd~~~~~~~~~~~~h~--------------~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 115 (369)
T 3zwl_B 51 SKDSSASVWYSLNGERLGTLDGHT--------------GTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCVATWKSP 115 (369)
T ss_dssp ESSSCEEEEETTTCCEEEEECCCS--------------SCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECS
T ss_pred eCCCEEEEEeCCCchhhhhhhhcC--------------CcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 468999999999999999999998 9999999999 8999999999999999999999999888899
Q ss_pred CCEEEEEEecCCcEEEEeC-C-----CcEEEEEccCCC----------eEEEEEeccCC--ceEEEEEcCCCCEEEEEec
Q psy11036 85 SPVESVLCLPSGGIFVTGG-G-----LDVCIWDMLGGG----------KLLHKFTCHHK--TVTSLCLASGGKRLISASL 146 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~-~-----~~i~~~d~~~~~----------~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~ 146 (239)
..+.+++|+|++.++++++ + +.|.+||++... .....+..|.. .+.+++|+|++++|++++.
T Consensus 116 ~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 195 (369)
T 3zwl_B 116 VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK 195 (369)
T ss_dssp SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET
T ss_pred CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC
Confidence 9999999999999999887 5 899999997332 23445556666 9999999999999999999
Q ss_pred CCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEe
Q psy11036 147 DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226 (239)
Q Consensus 147 d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 226 (239)
||.|++||++ +..+.+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+
T Consensus 196 dg~i~i~d~~-------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 256 (369)
T 3zwl_B 196 DGKISKYDVS-------------------NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY 256 (369)
T ss_dssp TSEEEEEETT-------------------TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEECC-------------------CCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence 9999999987 225777788889999999999999999999999999999999999999999
Q ss_pred cCCCCeeeeEecC
Q psy11036 227 DYPSPVLSIDVSM 239 (239)
Q Consensus 227 ~~~~~v~~~~~sp 239 (239)
.+..++.+++|+|
T Consensus 257 ~~~~~~~~~~~~~ 269 (369)
T 3zwl_B 257 ETDCPLNTAVITP 269 (369)
T ss_dssp ECSSCEEEEEECS
T ss_pred cCCCCceeEEecC
Confidence 9999999999987
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=217.45 Aligned_cols=216 Identities=19% Similarity=0.280 Sum_probs=185.3
Q ss_pred CCCCEEEEeeCCCcceeeeee--CCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 5 LPILIVALWDIPSEAQVSTFT--NHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
|-|++|+|||+.+++....+. .|. ..|++++|+| ++++|++|+.||+|++||+.+++.+..+
T Consensus 122 gld~tV~lWd~~tg~~~~~~~~~~~~--------------~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~~~~~ 186 (420)
T 4gga_A 122 ALDNSVYLWSASSGDILQLLQMEQPG--------------EYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMT 186 (420)
T ss_dssp EETTEEEEEETTTCCEEEEEECCSTT--------------CCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EeCCEEEEEECCCCCEEEEEEecCCC--------------CcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEEEEEe
Confidence 457999999999999887765 455 7899999999 8999999999999999999999988888
Q ss_pred cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cce
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 159 (239)
.|...+.++.++ +..+++++ |+.+.+||.+.....+..+.+|...+..+.++|+++++++++.|+.+++|+.. ++.
T Consensus 187 ~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~ 264 (420)
T 4gga_A 187 SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264 (420)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS
T ss_pred CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccc
Confidence 688999988775 67888888 89999999987777888999999999999999999999999999999999986 221
Q ss_pred ----Eeee-----------------------e--cceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEc--C
Q psy11036 160 ----VSSF-----------------------T--GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS--L 208 (239)
Q Consensus 160 ----~~~~-----------------------~--~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~ 208 (239)
+... . .++.|++||+.+ +++...+..| ..+.++.|+|+++.+++++ .
T Consensus 265 ~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~ 342 (420)
T 4gga_A 265 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAH-SQVCSILWSPHYKELISGHGFA 342 (420)
T ss_dssp CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT-TEEEEEEECS-SCEEEEEEETTTTEEEEEECTT
T ss_pred cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc-cccceeeccc-cceeeeeecCCCCeEEEEEecC
Confidence 1110 1 245699999987 6667676654 5688999999999888765 7
Q ss_pred CceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 209 DHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 209 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
|+.|+|||+.+++++.++. |.+.|++++|+|
T Consensus 343 d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp 374 (420)
T 4gga_A 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 374 (420)
T ss_dssp TCCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 9999999999999999998 889999999997
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=227.31 Aligned_cols=219 Identities=18% Similarity=0.269 Sum_probs=183.0
Q ss_pred CCCCEEEEeeCCCcc---eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC----CCc
Q psy11036 5 LPILIVALWDIPSEA---QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS----PDP 77 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~----~~~ 77 (239)
+.|+.|++||+.+++ ++..+ .|. ..|++++|+| ++.+|++++.||.|++||+.+ .+.
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~--------------~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~ 105 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASL-QVD--------------SKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINS 105 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCC-CCS--------------SCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCE
T ss_pred CCCCeEEEEEccCCCCCcEEEEE-ecC--------------CceEEEEECC-CCCeEEEEccCCeEEEeecccccccccc
Confidence 578899999998876 33333 355 8999999999 899999999999999999987 345
Q ss_pred eeee-cCCCCEEEEEEecC-CcEEEEeC-CCcEEEEEccCCC------eE--EEEEeccCCceEEEEEcCC-CCEEEEEe
Q psy11036 78 VMSV-NHGSPVESVLCLPS-GGIFVTGG-GLDVCIWDMLGGG------KL--LHKFTCHHKTVTSLCLASG-GKRLISAS 145 (239)
Q Consensus 78 ~~~~-~~~~~v~~~~~~~~-~~~l~~~~-~~~i~~~d~~~~~------~~--~~~~~~~~~~i~~i~~~~~-~~~l~~~~ 145 (239)
...+ .|...|.+++|+|+ +.++++++ |+.|++||++... .. ......|...|.+++|+|+ +.+|++++
T Consensus 106 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 185 (416)
T 2pm9_A 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG 185 (416)
T ss_dssp EEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES
T ss_pred hhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc
Confidence 5555 69999999999998 88999988 7999999998333 11 1223578899999999998 78999999
Q ss_pred cCCeEEEEEcc-cceEeee-----------------------------ecce---eEEEEEccCCCEEEEEEe-cccCcE
Q psy11036 146 LDHHAKIYEMT-LKTVSSF-----------------------------TGGL---DVCIWDMLGGGKLLHKFT-CHHKTV 191 (239)
Q Consensus 146 ~d~~i~i~d~~-~~~~~~~-----------------------------~~~~---~i~~~d~~~~~~~~~~~~-~h~~~v 191 (239)
.|+.|++||++ .+.+..+ ..++ .+++||+++...+...+. +|...|
T Consensus 186 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v 265 (416)
T 2pm9_A 186 SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGI 265 (416)
T ss_dssp SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCE
T ss_pred CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCce
Confidence 99999999997 3332221 1233 789999988667777787 899999
Q ss_pred EEEEEcc-CCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 192 TSLCLAS-GGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 192 ~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
.+++|+| ++++|++++.|+.|++||+.+++++..+. +...|.+++|+|
T Consensus 266 ~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 315 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP 315 (416)
T ss_dssp EEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT
T ss_pred eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC
Confidence 9999999 99999999999999999999999999988 788999999987
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=212.68 Aligned_cols=201 Identities=19% Similarity=0.364 Sum_probs=160.7
Q ss_pred CCCCCEEEEeeCCCcc-----eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce
Q psy11036 4 DLPILIVALWDIPSEA-----QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV 78 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~ 78 (239)
.+.||+|+|||+.+.+ +...+.+|. ..|.+++|+| ++++|++++.|+.|++|+.......
T Consensus 57 ~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~--------------~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~~~~ 121 (340)
T 4aow_A 57 ASRDKTIIMWKLTRDETNYGIPQRALRGHS--------------HFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTT 121 (340)
T ss_dssp EETTSCEEEEEECCSSSCSEEEEEEECCCS--------------SCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EcCCCeEEEEECCCCCcccceeeEEEeCCC--------------CCEEEEEECC-CCCEEEEEcccccceEEeeccccee
Confidence 3578999999987643 466788888 9999999999 8999999999999999987643211
Q ss_pred ee-----------------------------------------e---cCCCCEEEEEEecCC--cEEEEeC-CCcEEEEE
Q psy11036 79 MS-----------------------------------------V---NHGSPVESVLCLPSG--GIFVTGG-GLDVCIWD 111 (239)
Q Consensus 79 ~~-----------------------------------------~---~~~~~v~~~~~~~~~--~~l~~~~-~~~i~~~d 111 (239)
.. . .|...+..++|++++ .++++++ |+.|++||
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d 201 (340)
T 4aow_A 122 RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201 (340)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEE
T ss_pred eeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEE
Confidence 10 0 245677888888754 4566665 79999999
Q ss_pred ccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee--------------------ecceeEE
Q psy11036 112 MLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF--------------------TGGLDVC 170 (239)
Q Consensus 112 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~--------------------~~~~~i~ 170 (239)
++ ..+....+.+|..+|++++|+|++++|++++.|+.|++||++ .+.+..+ ..++.|+
T Consensus 202 ~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~ 280 (340)
T 4aow_A 202 LA-NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIK 280 (340)
T ss_dssp TT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEE
T ss_pred CC-CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEE
Confidence 98 788888999999999999999999999999999999999998 5544443 2345599
Q ss_pred EEEccCCCEEEEE---------EecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCe
Q psy11036 171 IWDMLGGGKLLHK---------FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFS 221 (239)
Q Consensus 171 ~~d~~~~~~~~~~---------~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~ 221 (239)
+||+++ ...+.. ..+|...|++++|+|++++|++|+.||.|+|||+++|+
T Consensus 281 iwd~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 281 IWDLEG-KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEETTT-TEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEECCC-CeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999876 333333 34688999999999999999999999999999999986
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=231.05 Aligned_cols=202 Identities=11% Similarity=0.012 Sum_probs=162.5
Q ss_pred CCCCCCEEEEeeCCCccee----eeeeCCceeeccceeeccCCCCCeEEEEEecC-----CCCEEEEeeCCCeEEEEeCC
Q psy11036 3 HDLPILIVALWDIPSEAQV----STFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV-----SSDIVISGSYDKTVNVYDTR 73 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~dg~v~vw~~~ 73 (239)
+.+.|++|+|||+.+++.. .++..|. +.|.+++|+|. ++.+|++++.||+|++||+.
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~--------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~ 243 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSF--------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII 243 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEEEEEEECC--------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECC
T ss_pred cCCCCceEEEEEccCCCCCceEEEEEEecC--------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcC
Confidence 4567899999999877642 3456666 88999999994 25799999999999999998
Q ss_pred CCCce-----------eee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEE--EEcCCC
Q psy11036 74 SPDPV-----------MSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSL--CLASGG 138 (239)
Q Consensus 74 ~~~~~-----------~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i--~~~~~~ 138 (239)
+++.. ..+ .|...|++++|+|++ .|++|+ ||+|++||++....+...+.+|...|.++ +|+|++
T Consensus 244 ~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g 322 (524)
T 2j04_B 244 DNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE 322 (524)
T ss_dssp CCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS
T ss_pred CCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC
Confidence 76421 234 588999999999865 677777 89999999984445566788999999999 578887
Q ss_pred -CEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccC--cEEEEEEccCCCeEEEEcCCceEEEE
Q psy11036 139 -KRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHK--TVTSLCLASGGKRLISASLDHHAKIY 215 (239)
Q Consensus 139 -~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~d~~i~iw 215 (239)
.+|++++.|++|+|||++ ..++...+.+|.. .|.+++|+|+++.+++++.|++|++|
T Consensus 323 ~~~laS~S~D~tvklWD~~--------------------~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lw 382 (524)
T 2j04_B 323 DTVVSTVAVDGYFYIFNPK--------------------DIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAV 382 (524)
T ss_dssp CCEEEEEETTSEEEEECGG--------------------GHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEE
T ss_pred CeEEEEeccCCeEEEEECC--------------------CCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEE
Confidence 899999999999999998 2233333345543 47899999999999999999999999
Q ss_pred EccCCeeeEEec-CCCCeeeeEecC
Q psy11036 216 EMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 216 d~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
|++++..+..+. |.+.|++++|||
T Consensus 383 d~~~~~~~~~l~gH~~~V~sva~Sp 407 (524)
T 2j04_B 383 PSRAAFAVHPLVSRETTITAIGVSR 407 (524)
T ss_dssp ETTCTTCCEEEEECSSCEEEEECCS
T ss_pred ECcccccceeeecCCCceEEEEeCC
Confidence 999998877776 899999999998
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=206.72 Aligned_cols=214 Identities=20% Similarity=0.300 Sum_probs=183.7
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC---Cceee
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP---DPVMS 80 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~---~~~~~ 80 (239)
.+.||.|++||+.+++....+..|. ..|.+++|+| ++++|++++.||.+++|++... +....
T Consensus 35 ~~~dg~v~vw~~~~~~~~~~~~~~~--------------~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~ 99 (313)
T 3odt_A 35 VSRDGTVRLWSKDDQWLGTVVYTGQ--------------GFLNSVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYT 99 (313)
T ss_dssp EETTSEEEEEEESSSEEEEEEEECS--------------SCEEEEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CE
T ss_pred EEcCCcEEEEECCCCEEEEEeecCC--------------ccEEEEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccc
Confidence 4678999999999999899999998 9999999999 8999999999999999998765 34445
Q ss_pred e-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEEcc-
Q psy11036 81 V-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMT- 156 (239)
Q Consensus 81 ~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~- 156 (239)
+ .|...|.+++| ++..+++++ |+.|++|| ..+....+..|...+.+++|.| +++.+++++.|+.|++||..
T Consensus 100 ~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 174 (313)
T 3odt_A 100 LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK 174 (313)
T ss_dssp ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE
T ss_pred hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc
Confidence 5 68899999999 466777777 89999999 4677888889999999999988 89999999999999999965
Q ss_pred c-ceEe-------------------eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEE
Q psy11036 157 L-KTVS-------------------SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 157 ~-~~~~-------------------~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
. ..+. ....++.+++||+++ .+++..+.+|...|.+++|+|++ .|++++.||.|++||
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd 252 (313)
T 3odt_A 175 VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHT-GDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWS 252 (313)
T ss_dssp EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEEC
T ss_pred eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCc-hhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEE
Confidence 1 1111 113455699999987 67888889999999999999999 588999999999999
Q ss_pred ccCCeeeEEec-CCCCeeeeEecC
Q psy11036 217 MVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 217 ~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
+.+++++..+. +..+|.+++|+|
T Consensus 253 ~~~~~~~~~~~~~~~~i~~~~~~~ 276 (313)
T 3odt_A 253 KENGSLKQVITLPAISIWSVDCMS 276 (313)
T ss_dssp TTTCCEEEEEECSSSCEEEEEECT
T ss_pred CCCCceeEEEeccCceEEEEEEcc
Confidence 99999999988 667999999987
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=242.63 Aligned_cols=219 Identities=16% Similarity=0.185 Sum_probs=196.6
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
+.||.|++||+.+++.+..+.+|. +.|.+++|+| ++++|++++.|++|++||+.+++.+..+ .|
T Consensus 634 ~~d~~i~vw~~~~~~~~~~~~~h~--------------~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 698 (1249)
T 3sfz_A 634 GADKTLQVFKAETGEKLLDIKAHE--------------DEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEH 698 (1249)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCS--------------SCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred eCCCeEEEEECCCCCEEEEeccCC--------------CCEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence 468999999999999999999999 9999999999 8999999999999999999999998888 79
Q ss_pred CCCEEEEEEec--CCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cce
Q psy11036 84 GSPVESVLCLP--SGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 84 ~~~v~~~~~~~--~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 159 (239)
...|.+++|+| ++..+++++ |+.|++||++ .++....+.+|...|.+++|+|+++++++++.||.|++||++ ++.
T Consensus 699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~-~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp SSCEEEEEECSSSSCCEEEEEETTSCEEEEETT-SSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred CCcEEEEEEecCCCceEEEEEeCCCeEEEEECC-CcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence 99999999999 555787877 7999999999 788889999999999999999999999999999999999997 433
Q ss_pred Eeee----------------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEE
Q psy11036 160 VSSF----------------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLIS 205 (239)
Q Consensus 160 ~~~~----------------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 205 (239)
...+ .+.+.+.+||..+.........+|...|.+++|+|+++++++
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 857 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEE
T ss_pred cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEE
Confidence 3222 234568999998866665556689999999999999999999
Q ss_pred EcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 206 ASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 206 ~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
++.||.|++||+.+++.+..+. |...|.+++|+|
T Consensus 858 ~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 892 (1249)
T 3sfz_A 858 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP 892 (1249)
T ss_dssp ECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EeCCCeEEEEEcCCCceeeecCCCccceEEEEECC
Confidence 9999999999999999999888 888999999987
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-33 Score=215.21 Aligned_cols=211 Identities=12% Similarity=0.103 Sum_probs=164.3
Q ss_pred CCCCEEEEeeCCCcceee-eeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEE--EeeCCCeEEEEeCCCCCceeee
Q psy11036 5 LPILIVALWDIPSEAQVS-TFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVI--SGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
+.|+.+++|++.+..... ...... ......+...+.+++|+| ++++++ +++.|++|++||+++++++..+
T Consensus 101 ~~d~~~r~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 101 KGNKHLRKFKYDKVNDQLEFLTSVD------FDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp SCCCCEEEEEEETTTTEEEEEEEEC------SSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred cCCCcEEEEEecCCCceEEEeeeec------eeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence 357889999986543221 111100 011112226689999999 777765 4557999999999999999888
Q ss_pred cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEE--EEeccCCceEEEEEcCCCCEEEEEecCC----eEEEEEc
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLH--KFTCHHKTVTSLCLASGGKRLISASLDH----HAKIYEM 155 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~----~i~i~d~ 155 (239)
.|...|.+++|+|+|+++++++++.+.+|+.. .++... ....|...|.+++|+|+++.+++++.|+ .+++|++
T Consensus 174 ~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~ 252 (365)
T 4h5i_A 174 ETRGEVKDLHFSTDGKVVAYITGSSLEVISTV-TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISI 252 (365)
T ss_dssp ECSSCCCEEEECTTSSEEEEECSSCEEEEETT-TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEE
T ss_pred CCCCceEEEEEccCCceEEeccceeEEEEEec-cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccc
Confidence 88899999999999999999998888888887 444433 3346888999999999999999999887 5667776
Q ss_pred ccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec--CCCCee
Q psy11036 156 TLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD--YPSPVL 233 (239)
Q Consensus 156 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~v~ 233 (239)
..... .......+.+|..+|++++|+|||++||+|+.|+.|+|||+++++++.++. |..+|+
T Consensus 253 ~~~~~----------------~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~ 316 (365)
T 4h5i_A 253 KSGNT----------------SVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAIT 316 (365)
T ss_dssp ETTEE----------------EEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEE
T ss_pred cccee----------------cceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEE
Confidence 51100 012234567899999999999999999999999999999999999999864 889999
Q ss_pred eeEecC
Q psy11036 234 SIDVSM 239 (239)
Q Consensus 234 ~~~~sp 239 (239)
+++|||
T Consensus 317 ~v~fSp 322 (365)
T 4h5i_A 317 EVTISP 322 (365)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 999998
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=208.40 Aligned_cols=178 Identities=20% Similarity=0.249 Sum_probs=150.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC--Cceeee-cCCCCEEEEEEec--CCcEEEEeC-CCcEEEEEccCCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP--DPVMSV-NHGSPVESVLCLP--SGGIFVTGG-GLDVCIWDMLGGG 116 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~--~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~-~~~i~~~d~~~~~ 116 (239)
+.|++++|+| ++++|++|+.|++|++||+... +.+..+ +|..+|.+++|+| ++.+|++++ |++|++||++...
T Consensus 10 ~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~ 88 (297)
T 2pm7_B 10 EMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR 88 (297)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred CceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence 9999999999 8999999999999999999743 556666 7999999999986 388999988 8999999998322
Q ss_pred -eEEEEEeccCCceEEEEEcCC--CCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEE
Q psy11036 117 -KLLHKFTCHHKTVTSLCLASG--GKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTS 193 (239)
Q Consensus 117 -~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~ 193 (239)
..+..+..|...|.+++|+|+ +.+|++++.|+.|++||++.. .......+.+|...|.+
T Consensus 89 ~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~------------------~~~~~~~~~~h~~~v~~ 150 (297)
T 2pm7_B 89 WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN------------------GTTSPIIIDAHAIGVNS 150 (297)
T ss_dssp BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS------------------SCBCCEEEECCSSCEEE
T ss_pred eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC------------------CceeeeeeecccCccce
Confidence 355677889999999999997 889999999999999998711 01113456789999999
Q ss_pred EEEccC-------------CCeEEEEcCCceEEEEEccCCe----eeEEec-CCCCeeeeEecC
Q psy11036 194 LCLASG-------------GKRLISASLDHHAKIYEMVNFS----PVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 194 ~~~s~~-------------~~~l~s~s~d~~i~iwd~~~~~----~~~~~~-~~~~v~~~~~sp 239 (239)
++|+|+ +++|++|+.|+.|++||+.+++ ....+. |...|.+++|+|
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp 214 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214 (297)
T ss_dssp EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC
Confidence 999997 5799999999999999998765 556666 888999999997
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=219.89 Aligned_cols=198 Identities=22% Similarity=0.273 Sum_probs=176.8
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N 82 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~ 82 (239)
.+.||.|++||+.+++.+..+.+|. +.|.+++|+| ++ ++++|+.||+|++||+++++....+ .
T Consensus 138 gs~dg~i~vwd~~~~~~~~~~~~h~--------------~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~ 201 (464)
T 3v7d_B 138 GADDKMIRVYDSINKKFLLQLSGHD--------------GGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCTHVFEG 201 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCS--------------SCEEEEEECS-TT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EcCCCcEEEEECCCCcEEEEEeCCC--------------cCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence 4678999999999999999999999 9999999998 45 9999999999999999999988888 5
Q ss_pred CCCCEEEEEEec--CCcEEEEeC-CCcEEEEEccCCCe----------------------EEEEEeccCCceEEEEEcCC
Q psy11036 83 HGSPVESVLCLP--SGGIFVTGG-GLDVCIWDMLGGGK----------------------LLHKFTCHHKTVTSLCLASG 137 (239)
Q Consensus 83 ~~~~v~~~~~~~--~~~~l~~~~-~~~i~~~d~~~~~~----------------------~~~~~~~~~~~i~~i~~~~~ 137 (239)
|...|.+++|++ ++.++++++ |+.|++||++.... ....+.+|...+.++ +++
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~ 279 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH 279 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE
T ss_pred CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC
Confidence 999999999994 778888888 89999999983321 255677888888877 567
Q ss_pred CCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 138 GKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 138 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
++++++++.|+.|++||++ ..+++..+.+|...|.+++|+|++++|++|+.||.|++||+
T Consensus 280 ~~~l~~~~~d~~i~vwd~~--------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~ 339 (464)
T 3v7d_B 280 GNIVVSGSYDNTLIVWDVA--------------------QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339 (464)
T ss_dssp TTEEEEEETTSCEEEEETT--------------------TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred CCEEEEEeCCCeEEEEECC--------------------CCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 8999999999999999988 56777778899999999999999999999999999999999
Q ss_pred cCCeeeEEec-CCCCeeeeEecC
Q psy11036 218 VNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 218 ~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
++++++..+. |...|.+++|++
T Consensus 340 ~~~~~~~~~~~h~~~v~~~~~~~ 362 (464)
T 3v7d_B 340 ENGELMYTLQGHTALVGLLRLSD 362 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEECS
T ss_pred CCCcEEEEEeCCCCcEEEEEEcC
Confidence 9999999998 888999999874
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=231.49 Aligned_cols=198 Identities=20% Similarity=0.281 Sum_probs=165.4
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee---
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--- 81 (239)
+.||.|+|||+.+++.+..+.+|. ..|.+++|+| ++++|++++.|++|++||+.........
T Consensus 449 s~Dg~v~vwd~~~~~~~~~~~~h~--------------~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 513 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVSTRRFVGHT--------------KDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGG 513 (694)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCS--------------SCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSST
T ss_pred eCCCcEEEEECCCCcceeEEeCCC--------------CCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCC
Confidence 468999999999999999999999 9999999999 8999999999999999998654333222
Q ss_pred -cCCCCEEEEEEecCC--cEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-
Q psy11036 82 -NHGSPVESVLCLPSG--GIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT- 156 (239)
Q Consensus 82 -~~~~~v~~~~~~~~~--~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~- 156 (239)
.|...|.+++|+|++ ..+++++ |+.|++||++ ..+....+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus 514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~-~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS-NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC-CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 477889999999986 5677777 8999999998 778888999999999999999999999999999999999998
Q ss_pred cceEeee--------------------ecceeEEEEEccCCCEEEEEEecc-------------------cCcEEEEEEc
Q psy11036 157 LKTVSSF--------------------TGGLDVCIWDMLGGGKLLHKFTCH-------------------HKTVTSLCLA 197 (239)
Q Consensus 157 ~~~~~~~--------------------~~~~~i~~~d~~~~~~~~~~~~~h-------------------~~~v~~~~~s 197 (239)
++.+..+ ..+..|++||+++ .+.+..+..+ ...+++++|+
T Consensus 593 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 671 (694)
T 3dm0_A 593 GKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671 (694)
T ss_dssp TEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEEC
T ss_pred CceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEc
Confidence 5554443 1234499999987 4555544322 1237899999
Q ss_pred cCCCeEEEEcCCceEEEEEccC
Q psy11036 198 SGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 198 ~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
|+|++|++|+.||.|++|++..
T Consensus 672 pdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 672 ADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp TTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCEEEEEcCCCeEEEEeccC
Confidence 9999999999999999999853
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=219.22 Aligned_cols=217 Identities=13% Similarity=0.185 Sum_probs=186.3
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-C
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-H 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~ 83 (239)
+.||.|++|| .+++.+..+..|. ..|.+++|+| ++++|++++.|+.|++||+.+++....+. +
T Consensus 127 ~~dg~i~i~~-~~~~~~~~~~~~~--------------~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 190 (425)
T 1r5m_A 127 VENGELRLWN-KTGALLNVLNFHR--------------APIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELK 190 (425)
T ss_dssp ETTSCEEEEE-TTSCEEEEECCCC--------------SCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred eCCCeEEEEe-CCCCeeeeccCCC--------------ccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeecc
Confidence 3679999999 6788888999998 9999999999 89999999999999999999998887773 4
Q ss_pred CCC---------------EEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCC
Q psy11036 84 GSP---------------VESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH 148 (239)
Q Consensus 84 ~~~---------------v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 148 (239)
... +.+++|+|++.+++.+.++.|++||++ ..+.+..+..|...|.+++|+|++++|++++.|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 269 (425)
T 1r5m_A 191 ETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQIT-EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDG 269 (425)
T ss_dssp ---------------CCCBSCCEEEETTEEEEECGGGCEEEEETT-CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred ccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcC-CCceeeeeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 444 899999998765544448999999998 7777888889999999999999999999999999
Q ss_pred eEEEEEcc-cceEeee---------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEE
Q psy11036 149 HAKIYEMT-LKTVSSF---------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA 206 (239)
Q Consensus 149 ~i~i~d~~-~~~~~~~---------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 206 (239)
.|++||++ .+.+..+ ..++.+++||+.+ .+.+..+..|...|.+++|+|++++|+++
T Consensus 270 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 348 (425)
T 1r5m_A 270 TLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQ-NTLLALSIVDGVPIFAGRISQDGQKYAVA 348 (425)
T ss_dssp CEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTT-TEEEEEEECTTCCEEEEEECTTSSEEEEE
T ss_pred EEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCC-CcEeEecccCCccEEEEEEcCCCCEEEEE
Confidence 99999987 3333222 2355699999986 67888888999999999999999999999
Q ss_pred cCCceEEEEEccCCe--------------------eeEEec-CCC--CeeeeEecC
Q psy11036 207 SLDHHAKIYEMVNFS--------------------PVHTLD-YPS--PVLSIDVSM 239 (239)
Q Consensus 207 s~d~~i~iwd~~~~~--------------------~~~~~~-~~~--~v~~~~~sp 239 (239)
+.||.|++||+.+++ ++..+. +.. .|.+++|+|
T Consensus 349 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 404 (425)
T 1r5m_A 349 FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC 404 (425)
T ss_dssp ETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT
T ss_pred ECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC
Confidence 999999999999888 888887 544 999999987
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=214.00 Aligned_cols=211 Identities=25% Similarity=0.371 Sum_probs=181.7
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N 82 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~ 82 (239)
.+.||.|++||+.+++.+..+.+|. ..|.+++|++ +.+++|+.||+|++||+.+++....+ .
T Consensus 175 ~~~dg~i~vwd~~~~~~~~~~~~h~--------------~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 237 (445)
T 2ovr_B 175 GSTDRTLKVWNAETGECIHTLYGHT--------------STVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMG 237 (445)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCS--------------SCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEEC
T ss_pred EeCCCeEEEEECCcCcEEEEECCCC--------------CcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3567888888888888888888887 8999999964 67999999999999999999888877 6
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceE
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTV 160 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~ 160 (239)
|...+.++++ ++..+++++ |+.|++||++ .++.+..+.+|...|.+++| ++.++++++.|+.|++||++ ++.+
T Consensus 238 ~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 238 HVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE-TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp CSSCEEEEEE--CSSCEEEEETTSCEEEEEGG-GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CcccEEEEEE--CCCEEEEEcCCCEEEEEECC-CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEE
Confidence 8899999998 577788777 8999999998 78889999999999999999 78899999999999999998 6555
Q ss_pred eee--------------------ecceeEEEEEccCCCEEEEEEec---ccCcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 161 SSF--------------------TGGLDVCIWDMLGGGKLLHKFTC---HHKTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 161 ~~~--------------------~~~~~i~~~d~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
..+ ..++.+++||+++ ++.+..+.. |...|.+++|+ +++|++|+.||.|++||+
T Consensus 313 ~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 313 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTT-CCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCC-CcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 544 2345699999976 567777776 88899999995 689999999999999999
Q ss_pred cCCeeeEEe------cCCCCeeeeEecC
Q psy11036 218 VNFSPVHTL------DYPSPVLSIDVSM 239 (239)
Q Consensus 218 ~~~~~~~~~------~~~~~v~~~~~sp 239 (239)
.+++.+..+ .+.+.|.+++|+|
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 417 (445)
T 2ovr_B 390 KTGEFIRNLVTLESGGSGGVVWRIRASN 417 (445)
T ss_dssp TTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred CCCceeeeeeccccCCCCceEEEEEecC
Confidence 999999888 3678899999987
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=211.12 Aligned_cols=208 Identities=17% Similarity=0.202 Sum_probs=162.8
Q ss_pred CCCCEEEEeeCCCc----ceeeeeeCCceeeccceeeccCCCCCeEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCC---
Q psy11036 5 LPILIVALWDIPSE----AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV-SSDIVISGSYDKTVNVYDTRSPD--- 76 (239)
Q Consensus 5 ~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~v~vw~~~~~~--- 76 (239)
+.||.|++||+.++ +....+.+|. ..|++++|+|. ++++|++++.||.|++||+++++
T Consensus 30 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~ 95 (351)
T 3f3f_A 30 SSDQHIKVFKLDKDTSNWELSDSWRAHD--------------SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC 95 (351)
T ss_dssp ETTSEEEEEEECSSSCCEEEEEEEECCS--------------SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT
T ss_pred eCCCeEEEEECCCCCCcceecceeccCC--------------CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc
Confidence 46899999999876 4667778888 99999999994 38899999999999999998763
Q ss_pred ------ceeee-cCCCCEEEEEEecC--CcEEEEeC-CCcEEEEEccCCC------------------------------
Q psy11036 77 ------PVMSV-NHGSPVESVLCLPS--GGIFVTGG-GLDVCIWDMLGGG------------------------------ 116 (239)
Q Consensus 77 ------~~~~~-~~~~~v~~~~~~~~--~~~l~~~~-~~~i~~~d~~~~~------------------------------ 116 (239)
....+ .|...|.+++|+|+ +.++++++ |+.|++||++...
T Consensus 96 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (351)
T 3f3f_A 96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 175 (351)
T ss_dssp SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence 34445 68899999999999 99999888 8999999986321
Q ss_pred -----------------------------eEEEEEeccCCceEEEEEcCCC----CEEEEEecCCeEEEEEcc-cceEee
Q psy11036 117 -----------------------------KLLHKFTCHHKTVTSLCLASGG----KRLISASLDHHAKIYEMT-LKTVSS 162 (239)
Q Consensus 117 -----------------------------~~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~d~~i~i~d~~-~~~~~~ 162 (239)
..+..+.+|...|.+++|+|++ ++|++++.||.|++||++ ......
T Consensus 176 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 255 (351)
T 3f3f_A 176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA 255 (351)
T ss_dssp CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----
T ss_pred ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc
Confidence 1144556789999999999998 899999999999999998 221111
Q ss_pred ee--------------------------cceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEE
Q psy11036 163 FT--------------------------GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 163 ~~--------------------------~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
.. ....+.+|+... .+.+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 256 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ-VELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp -----------------------------------CCSEE-EEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cCCcccceeccCCCcccccccccccccccceeeeeccccc-ccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 10 000122333222 467778889999999999999999999999999999999
Q ss_pred ccCCeeeEEec
Q psy11036 217 MVNFSPVHTLD 227 (239)
Q Consensus 217 ~~~~~~~~~~~ 227 (239)
+.+++.+..+.
T Consensus 335 ~~~~~~~~~~~ 345 (351)
T 3f3f_A 335 ATYSNEFKCMS 345 (351)
T ss_dssp ECTTSCEEEEE
T ss_pred cCcCcchhhee
Confidence 99887665544
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=213.28 Aligned_cols=219 Identities=14% Similarity=0.188 Sum_probs=175.2
Q ss_pred CCCEEEEeeCCCcceeeeee-CCceeeccceeeccCCCCCeEEEEEecCC--CCEEEEeeCCCeEEEEeCCCCC-ceeee
Q psy11036 6 PILIVALWDIPSEAQVSTFT-NHTTIYKVPLMLYSTPQDYVRAGTVSPVS--SDIVISGSYDKTVNVYDTRSPD-PVMSV 81 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~v~vw~~~~~~-~~~~~ 81 (239)
.||.|++||+.+++...... .|. ..|.+++|+|+. +++|++|+.||.|++||+.+++ ....+
T Consensus 42 ~d~~v~iw~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 107 (357)
T 3i2n_A 42 GTGVIQLYEIQHGDLKLLREIEKA--------------KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV 107 (357)
T ss_dssp CCEEEEEEEECSSSEEEEEEEEES--------------SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred CCcEEEEEeCCCCcccceeeeccc--------------CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEE
Confidence 38999999999887655433 576 899999999942 6999999999999999999887 66666
Q ss_pred -cCCCCEEEEEE------ecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCC----ceEEEE----EcCCCCEEEEEe
Q psy11036 82 -NHGSPVESVLC------LPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHK----TVTSLC----LASGGKRLISAS 145 (239)
Q Consensus 82 -~~~~~v~~~~~------~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~----~i~~i~----~~~~~~~l~~~~ 145 (239)
.|...|.++.| +|+++.+++++ |+.|++||++.....+..+..|.+ .+.+++ |+|+++++++++
T Consensus 108 ~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 187 (357)
T 3i2n_A 108 KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY 187 (357)
T ss_dssp CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE
T ss_pred EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEc
Confidence 68999999965 67899999988 899999999844446777776655 889998 688999999999
Q ss_pred cCCeEEEEEcc-cceEeee------------------------ecceeEEEEEccCCCEEEE-----EEecccCcEEEEE
Q psy11036 146 LDHHAKIYEMT-LKTVSSF------------------------TGGLDVCIWDMLGGGKLLH-----KFTCHHKTVTSLC 195 (239)
Q Consensus 146 ~d~~i~i~d~~-~~~~~~~------------------------~~~~~i~~~d~~~~~~~~~-----~~~~h~~~v~~~~ 195 (239)
.|+.|++||++ .+..... ..++.+++||+++ .++.. .+.+|...|.+++
T Consensus 188 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~ 266 (357)
T 3i2n_A 188 DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTVWQVR 266 (357)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCEEEEE
T ss_pred cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCEEEEE
Confidence 99999999998 3322111 1234589999876 23222 3448999999999
Q ss_pred EccCCC-eEEEEcCCceEEEEEccCC-------------------eeeEEec-CCCCeeeeEecC
Q psy11036 196 LASGGK-RLISASLDHHAKIYEMVNF-------------------SPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 196 ~s~~~~-~l~s~s~d~~i~iwd~~~~-------------------~~~~~~~-~~~~v~~~~~sp 239 (239)
|+|+++ +|++++.||.|++||+.++ +.+..+. +..+|.+++|+|
T Consensus 267 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 331 (357)
T 3i2n_A 267 HLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP 331 (357)
T ss_dssp EETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS
T ss_pred ECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC
Confidence 999998 8999999999999999754 3555665 888999999987
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=224.25 Aligned_cols=217 Identities=12% Similarity=0.199 Sum_probs=164.9
Q ss_pred CCCCEEEEeeCCCcc-----------eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCC--CEEEEeeCCCeEEEEe
Q psy11036 5 LPILIVALWDIPSEA-----------QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSS--DIVISGSYDKTVNVYD 71 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~dg~v~vw~ 71 (239)
+.||.|+|||+.+++ ....+.+|...+. ........+.|++++|+| ++ .+|++++.|++|++||
T Consensus 47 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~--~~~~~~~~~~V~~l~~~~-~~~~~~l~s~s~d~~i~iw~ 123 (447)
T 3dw8_B 47 DKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFD--YLKSLEIEEKINKIRWLP-QKNAAQFLLSTNDKTIKLWK 123 (447)
T ss_dssp ETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEE--GGGTEEECCCCCEEEECC-CCSSSEEEEEECSSCEEEEE
T ss_pred cCCCeEEEEEecCCCCCCcccccceeEeccccccccccc--ccccccccCceEEEEEcC-CCCcceEEEeCCCCeEEEEe
Confidence 468999999998876 4667777741000 000000015699999999 55 7999999999999999
Q ss_pred CCCCCce---------------------------------------eee--cCCCCEEEEEEecCCcEEEEeCCCcEEEE
Q psy11036 72 TRSPDPV---------------------------------------MSV--NHGSPVESVLCLPSGGIFVTGGGLDVCIW 110 (239)
Q Consensus 72 ~~~~~~~---------------------------------------~~~--~~~~~v~~~~~~~~~~~l~~~~~~~i~~~ 110 (239)
+.+++.. ..+ .|...|.+++|+|++++++++.|+.|++|
T Consensus 124 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iw 203 (447)
T 3dw8_B 124 ISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLW 203 (447)
T ss_dssp EEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEE
T ss_pred cccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEE
Confidence 8764321 122 58899999999999999999988999999
Q ss_pred EccCCCeEEEE-------EeccCCceEEEEEcCCC-CEEEEEecCCeEEEEEcc-cce----------------------
Q psy11036 111 DMLGGGKLLHK-------FTCHHKTVTSLCLASGG-KRLISASLDHHAKIYEMT-LKT---------------------- 159 (239)
Q Consensus 111 d~~~~~~~~~~-------~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~-~~~---------------------- 159 (239)
|++...+.+.. +..|...|.+++|+|++ ++|++++.|+.|++||++ ++.
T Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (447)
T 3dw8_B 204 HLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSE 283 (447)
T ss_dssp ETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHH
T ss_pred ECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccc
Confidence 99743444442 45789999999999998 999999999999999987 332
Q ss_pred ----Eeee-----------ecceeEEEEEccCCCEEEEEEecccCc---------------EEEEEEccCCCeEEEEcCC
Q psy11036 160 ----VSSF-----------TGGLDVCIWDMLGGGKLLHKFTCHHKT---------------VTSLCLASGGKRLISASLD 209 (239)
Q Consensus 160 ----~~~~-----------~~~~~i~~~d~~~~~~~~~~~~~h~~~---------------v~~~~~s~~~~~l~s~s~d 209 (239)
+..+ .+.+.+++||++...+++..+.+|... +..++|+|++++|++|+.|
T Consensus 284 ~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d 363 (447)
T 3dw8_B 284 IISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN 363 (447)
T ss_dssp HTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST
T ss_pred cCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccC
Confidence 1111 122569999998767788888888642 2348999999999999999
Q ss_pred ceEEEEEccCCeeeE
Q psy11036 210 HHAKIYEMVNFSPVH 224 (239)
Q Consensus 210 ~~i~iwd~~~~~~~~ 224 (239)
|.|++||+.+++.+.
T Consensus 364 g~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 364 NFFRMFDRNTKRDIT 378 (447)
T ss_dssp TEEEEEETTTCCEEE
T ss_pred CEEEEEEcCCCccee
Confidence 999999999988764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=206.07 Aligned_cols=196 Identities=16% Similarity=0.169 Sum_probs=161.5
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC----ceeee-cCCCCEEEEEEec--CCcEEEEeC-CCcEEEEEccC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD----PVMSV-NHGSPVESVLCLP--SGGIFVTGG-GLDVCIWDMLG 114 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~----~~~~~-~~~~~v~~~~~~~--~~~~l~~~~-~~~i~~~d~~~ 114 (239)
+.|++++|+| ++++|++|+.||.|++||+.++. ....+ .|...|.+++|+| ++.++++++ |+.|++||++.
T Consensus 12 ~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 12 DLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp SCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred cceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 9999999999 89999999999999999998764 33444 6899999999999 589999888 89999999983
Q ss_pred CC--------eEEEEEeccCCceEEEEEcCC--CCEEEEEecCCeEEEEEcc-cceEee---------------------
Q psy11036 115 GG--------KLLHKFTCHHKTVTSLCLASG--GKRLISASLDHHAKIYEMT-LKTVSS--------------------- 162 (239)
Q Consensus 115 ~~--------~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~i~d~~-~~~~~~--------------------- 162 (239)
.. +.+..+..|...|.+++|+|+ +.+|++++.|+.|++||++ .+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (351)
T 3f3f_A 91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD 170 (351)
T ss_dssp TSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC
T ss_pred CcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce
Confidence 22 667888899999999999999 9999999999999999987 332111
Q ss_pred -----------------eecceeEEEEEccCCC-EEEEEEecccCcEEEEEEccCC----CeEEEEcCCceEEEEEccCC
Q psy11036 163 -----------------FTGGLDVCIWDMLGGG-KLLHKFTCHHKTVTSLCLASGG----KRLISASLDHHAKIYEMVNF 220 (239)
Q Consensus 163 -----------------~~~~~~i~~~d~~~~~-~~~~~~~~h~~~v~~~~~s~~~----~~l~s~s~d~~i~iwd~~~~ 220 (239)
...++.+.+|+..... ..+..+.+|...|.+++|+|++ ++|++++.||.|++||+.++
T Consensus 171 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp EEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred eEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 1223335555544432 3467778899999999999998 89999999999999999875
Q ss_pred ----------------------------------------------eeeEEec-CCCCeeeeEecC
Q psy11036 221 ----------------------------------------------SPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 221 ----------------------------------------------~~~~~~~-~~~~v~~~~~sp 239 (239)
+++..+. |...|++++|+|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 316 (351)
T 3f3f_A 251 LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL 316 (351)
T ss_dssp C---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred cCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence 5666666 788999999987
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=214.67 Aligned_cols=204 Identities=18% Similarity=0.217 Sum_probs=170.8
Q ss_pred CCCCEEEEeeCC--CcceeeeeeCCceeeccceeeccCCCCCeEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCC--cee
Q psy11036 5 LPILIVALWDIP--SEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV-SSDIVISGSYDKTVNVYDTRSPD--PVM 79 (239)
Q Consensus 5 ~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~v~vw~~~~~~--~~~ 79 (239)
+.||.|++||+. +++.+..+.+|. ..|++++|++. ++++|++++.||.|++||+.+++ ...
T Consensus 30 ~~dg~i~iw~~~~~~~~~~~~~~~h~--------------~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 95 (379)
T 3jrp_A 30 SSDKTIKIFEVEGETHKLIDTLTGHE--------------GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA 95 (379)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCS--------------SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred ECCCcEEEEecCCCcceeeeEecCCC--------------CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEee
Confidence 368999999997 567778899998 99999999872 28999999999999999999886 444
Q ss_pred ee-cCCCCEEEEEEecC--CcEEEEeC-CCcEEEEEccCCC-eEEEEEeccCCceEEEEEcC-------------CCCEE
Q psy11036 80 SV-NHGSPVESVLCLPS--GGIFVTGG-GLDVCIWDMLGGG-KLLHKFTCHHKTVTSLCLAS-------------GGKRL 141 (239)
Q Consensus 80 ~~-~~~~~v~~~~~~~~--~~~l~~~~-~~~i~~~d~~~~~-~~~~~~~~~~~~i~~i~~~~-------------~~~~l 141 (239)
.+ .|...|.+++|+|+ +.++++++ |+.|++||++... .....+..|...|.+++|+| ++.++
T Consensus 96 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l 175 (379)
T 3jrp_A 96 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 175 (379)
T ss_dssp EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEE
T ss_pred eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEE
Confidence 55 58899999999999 88999888 8999999998432 34556778999999999999 69999
Q ss_pred EEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC---CCeEEEEcCCceEEEEEc
Q psy11036 142 ISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG---GKRLISASLDHHAKIYEM 217 (239)
Q Consensus 142 ~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~s~d~~i~iwd~ 217 (239)
++++.|+.|++||++ ... .......+.+|...|.+++|+|+ +++|++++.||.|++||+
T Consensus 176 ~~~~~dg~i~i~d~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 176 VTGGADNLVKIWKYNSDAQ-----------------TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp EEEETTSCEEEEEEETTTT-----------------EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred EEEeCCCeEEEEEecCCCc-----------------ceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 999999999999987 111 12345667889999999999999 899999999999999999
Q ss_pred cCCe---eeEEe---cCCCCeeeeEecC
Q psy11036 218 VNFS---PVHTL---DYPSPVLSIDVSM 239 (239)
Q Consensus 218 ~~~~---~~~~~---~~~~~v~~~~~sp 239 (239)
.+++ ....+ .+...|.+++|+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 266 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSL 266 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECS
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcC
Confidence 8864 12222 2778999999987
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-32 Score=211.05 Aligned_cols=189 Identities=13% Similarity=0.162 Sum_probs=160.8
Q ss_pred CCCCEEEEeeCCCcceeeeee--CCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 5 LPILIVALWDIPSEAQVSTFT--NHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
+.||.|++||+.+++....+. +|. ..|.+++|+|+++++|++++.|+.|++||+.+ .....+
T Consensus 93 ~~dg~i~iwd~~~~~~~~~~~~~~h~--------------~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~ 157 (383)
T 3ei3_B 93 SKGGDIILWDYDVQNKTSFIQGMGPG--------------DAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFA 157 (383)
T ss_dssp EBTSCEEEEETTSTTCEEEECCCSTT--------------CBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEE
T ss_pred cCCCeEEEEeCCCcccceeeecCCcC--------------CceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEe
Confidence 368999999999888777765 577 99999999996678999999999999999986 444444
Q ss_pred c---CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCC-EEEEEecCCeEEEEEcc
Q psy11036 82 N---HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISASLDHHAKIYEMT 156 (239)
Q Consensus 82 ~---~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~ 156 (239)
. +...|.+++|+|+++++++++ |+.|++||++ ++.+..+..|...|.+++|+|+++ ++++++.|+.|++||++
T Consensus 158 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 158 KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGG
T ss_pred ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCC
Confidence 3 447899999999999999998 7999999994 678888999999999999999998 99999999999999998
Q ss_pred cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 157 LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 157 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.. .....++..+ +|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+.
T Consensus 236 ~~----------------~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 236 NI----------------KDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp GC----------------CSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred CC----------------CcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 10 0013444444 6899999999999 99999999999999999999887766554
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-32 Score=212.10 Aligned_cols=214 Identities=21% Similarity=0.284 Sum_probs=169.3
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC-CCceeee-c
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS-PDPVMSV-N 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~-~ 82 (239)
+.||.|++||+.+++.+..+..|. ..|.+++|+ ++++++++.||.|++||++. ......+ .
T Consensus 153 ~~dg~i~iwd~~~~~~~~~~~~~~--------------~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 215 (401)
T 4aez_A 153 LGNGLVDIYDVESQTKLRTMAGHQ--------------ARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQG 215 (401)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCS--------------SCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred CCCCeEEEEECcCCeEEEEecCCC--------------CceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcC
Confidence 358999999999999999999998 999999995 46999999999999999984 4555555 6
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCC-EEEEEe--cCCeEEEEEcc-c
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISAS--LDHHAKIYEMT-L 157 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~--~d~~i~i~d~~-~ 157 (239)
|...|.+++|+|++.++++++ |+.|++||++ ..+....+..|...|.+++|+|++. .+++++ .|+.|++||++ +
T Consensus 216 ~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR-SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETT-CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC-CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence 999999999999999999998 7999999999 7888888989999999999999775 555554 79999999998 5
Q ss_pred ceEeee---------------------ec--ceeEEEEEccCCC-EEEEEEecccCcEEEEEEccCCCeEEEEcCCceEE
Q psy11036 158 KTVSSF---------------------TG--GLDVCIWDMLGGG-KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAK 213 (239)
Q Consensus 158 ~~~~~~---------------------~~--~~~i~~~d~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~ 213 (239)
+.+..+ .| ++.+.+||+.+.. .....+.+|...|.+++|+|++++|++++.||.|+
T Consensus 295 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 295 ARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLK 374 (401)
T ss_dssp CEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEE
T ss_pred CEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 544443 12 5679999998742 33445778999999999999999999999999999
Q ss_pred EEEccCCeeeEEec--CCCCeeeeE
Q psy11036 214 IYEMVNFSPVHTLD--YPSPVLSID 236 (239)
Q Consensus 214 iwd~~~~~~~~~~~--~~~~v~~~~ 236 (239)
+|++.+++.+.... ...+..++.
T Consensus 375 iw~~~~~~~~~~~~~~~~~~~~~i~ 399 (401)
T 4aez_A 375 FWRVYDGDHVKRPIPITKTPSSSIT 399 (401)
T ss_dssp EEECCC-------------------
T ss_pred EEECCCCccccccccccCCCcccee
Confidence 99999998877654 333444443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-32 Score=213.02 Aligned_cols=225 Identities=12% Similarity=0.206 Sum_probs=177.6
Q ss_pred CCCCEEEEeeC----CCcc------eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC
Q psy11036 5 LPILIVALWDI----PSEA------QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS 74 (239)
Q Consensus 5 ~~dg~i~vwd~----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 74 (239)
+.||.|++||+ .+++ ....+...... ......+.+.|++++|+| ++++|++++.||.|++|| .+
T Consensus 65 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~ 138 (425)
T 1r5m_A 65 EKNSVARLARIVETDQEGKKYWKLTIIAELRHPFAL----SASSGKTTNQVTCLAWSH-DGNSIVTGVENGELRLWN-KT 138 (425)
T ss_dssp ETBTEEEEEEEEEC------CEEEEEEEEEECCCCC----C------CBCEEEEEECT-TSSEEEEEETTSCEEEEE-TT
T ss_pred cCCceEEEEEEecccCCccccccccccccccccccc----cccccCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEe-CC
Confidence 45799999999 8887 44444431000 000001127999999999 899999999999999999 56
Q ss_pred CCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCc---------------eEEEEEcCC
Q psy11036 75 PDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKT---------------VTSLCLASG 137 (239)
Q Consensus 75 ~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~---------------i~~i~~~~~ 137 (239)
++....+ .|...|.+++|+|+++++++++ ++.|++||++ .++.+..+..+... +.+++|+|+
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (425)
T 1r5m_A 139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI-SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD 217 (425)
T ss_dssp SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT-TTEEEEEECCC---------------CCCBSCCEEEET
T ss_pred CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC-CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC
Confidence 7777777 6899999999999999999888 7999999998 78888888877776 999999987
Q ss_pred CCEEEEEecCCeEEEEEcc-cceEeee----------------------ecceeEEEEEccCCCEEEEEEecccCcEEEE
Q psy11036 138 GKRLISASLDHHAKIYEMT-LKTVSSF----------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSL 194 (239)
Q Consensus 138 ~~~l~~~~~d~~i~i~d~~-~~~~~~~----------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~ 194 (239)
+ .+++++.|+.|++||++ .+.+..+ ..++.+++||+.+ .+.+..+..|...|.++
T Consensus 218 ~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~ 295 (425)
T 1r5m_A 218 D-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSIVSA 295 (425)
T ss_dssp T-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSCEEEE
T ss_pred C-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecCCCccEEEE
Confidence 5 58899999999999987 3332222 2345699999886 56677788899999999
Q ss_pred EEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 195 CLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 195 ~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
+|+|++ +|++++.|+.|++||+.+++.+..+. +..++.+++|+|
T Consensus 296 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 296 SWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp EEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT
T ss_pred EECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC
Confidence 999999 99999999999999999999999888 688999999987
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-32 Score=211.90 Aligned_cols=207 Identities=22% Similarity=0.311 Sum_probs=170.7
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCC--CCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVS--SDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
+.||.|++||+.+++....+.. . ..+.+++++|.+ +.++++++.|+.|++||+++++....+
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 183 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQTADVFNF-E--------------ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ 183 (408)
T ss_dssp ETTSEEEEEETTTTEEEEEEEC-S--------------SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC
T ss_pred eCCCeEEEeeCCCCccceeccC-C--------------CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec
Confidence 4689999999999998888774 4 789999999842 349999999999999999999888888
Q ss_pred cCCCCEEEEEEecCCc-EEEEeC-CCcEEEEEccCCCeEEEEE---------------eccCCceEEEEEcCCCCEEEEE
Q psy11036 82 NHGSPVESVLCLPSGG-IFVTGG-GLDVCIWDMLGGGKLLHKF---------------TCHHKTVTSLCLASGGKRLISA 144 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~-~l~~~~-~~~i~~~d~~~~~~~~~~~---------------~~~~~~i~~i~~~~~~~~l~~~ 144 (239)
.|...|.+++|+|++. ++++++ |+.|++||++.....+..+ ..|...|.+++|+|++++|+++
T Consensus 184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 5899999999999998 477776 8999999998544455554 5688999999999999999999
Q ss_pred ecCCeEEEEEcc-cceEee---------------------------eecceeEEEEEccCCCEEEEEEecccCcEEEEEE
Q psy11036 145 SLDHHAKIYEMT-LKTVSS---------------------------FTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL 196 (239)
Q Consensus 145 ~~d~~i~i~d~~-~~~~~~---------------------------~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~ 196 (239)
+.|+.|++||++ ++.... ...++.+++||+.+ .+++..+.+|...|.+++|
T Consensus 264 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~ 342 (408)
T 4a11_B 264 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS-GEQITMLKGHYKTVDCCVF 342 (408)
T ss_dssp ETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT-CCEEEEECCCSSCEEEEEE
T ss_pred cCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcC-CcceeeeccCCCeEEEEEE
Confidence 999999999998 332211 13456699999987 7788889999999999999
Q ss_pred ccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 197 ASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 197 s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
+|++++|++++.||.|++||+.+++++....
T Consensus 343 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 343 QSNFQELYSGSRDCNILAWVPSLYEPVPDDD 373 (408)
T ss_dssp ETTTTEEEEEETTSCEEEEEECC--------
T ss_pred cCCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence 9999999999999999999999998876554
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-31 Score=212.87 Aligned_cols=216 Identities=21% Similarity=0.309 Sum_probs=182.5
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCce----
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV-SSDIVISGSYDKTVNVYDTRSPDPV---- 78 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~v~vw~~~~~~~~---- 78 (239)
.+.||.|++||+++++.+..+.+|. +.|.+++|++. ++.++++|+.|++|++||+++++..
T Consensus 179 ~s~dg~i~vwd~~~~~~~~~~~~h~--------------~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 244 (464)
T 3v7d_B 179 GSTDRTVRVWDIKKGCCTHVFEGHN--------------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCS--------------SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC----
T ss_pred EeCCCCEEEEECCCCcEEEEECCCC--------------CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccc
Confidence 3678999999999999999999998 99999999952 5689999999999999999877532
Q ss_pred -------------------eee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCC
Q psy11036 79 -------------------MSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG 137 (239)
Q Consensus 79 -------------------~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~ 137 (239)
..+ .|...+.++ ++++.++++++ |+.|++||++ .++.+..+.+|...|.+++|+|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~ 321 (464)
T 3v7d_B 245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVA-QMKCLYILSGHTDRIYSTIYDHE 321 (464)
T ss_dssp --CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEETT
T ss_pred ccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECC-CCcEEEEecCCCCCEEEEEEcCC
Confidence 223 577777776 56788999888 8999999999 88899999999999999999999
Q ss_pred CCEEEEEecCCeEEEEEcc-cceEeee--------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEE
Q psy11036 138 GKRLISASLDHHAKIYEMT-LKTVSSF--------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL 196 (239)
Q Consensus 138 ~~~l~~~~~d~~i~i~d~~-~~~~~~~--------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~ 196 (239)
++++++++.|+.|++||++ ++.+..+ ..++.+++||+.+..... .. .|...+..++|
T Consensus 322 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~-~~~~~~~~~~~ 399 (464)
T 3v7d_B 322 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF-SY-HHTNLSAITTF 399 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-EE-ECTTCCCEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceee-ee-cCCCCccEEEE
Confidence 9999999999999999998 6655554 235569999998754333 33 35667888899
Q ss_pred ccCCCeEEEEcCCceEEEEEccCCeeeEEec--CCCCeeeeEecC
Q psy11036 197 ASGGKRLISASLDHHAKIYEMVNFSPVHTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 197 s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp 239 (239)
+|++++|++++ ||.|++||+++++.+..+. +...|.+++|++
T Consensus 400 ~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~ 443 (464)
T 3v7d_B 400 YVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG 443 (464)
T ss_dssp EECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEET
T ss_pred EeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecC
Confidence 99999999998 8999999999999998733 778999999863
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=222.05 Aligned_cols=189 Identities=19% Similarity=0.214 Sum_probs=156.2
Q ss_pred CCCCEEEEeeCCCccee--eeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec
Q psy11036 5 LPILIVALWDIPSEAQV--STFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 82 (239)
+.||.|+|||+.+++.. ..+.+|. +.|++++|+|.++++|++|+.||+|++||++++.......
T Consensus 139 s~dg~i~lWd~~~~~~~~~~~~~gH~--------------~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 204 (435)
T 4e54_B 139 SKGGDIMLWNFGIKDKPTFIKGIGAG--------------GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFAS 204 (435)
T ss_dssp ETTSCEEEECSSCCSCCEEECCCSSS--------------CCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEEC
T ss_pred eCCCEEEEEECCCCCceeEEEccCCC--------------CCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEec
Confidence 46899999999876543 4456788 9999999999778999999999999999998664433332
Q ss_pred ---CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCC-EEEEEecCCeEEEEEcc-
Q psy11036 83 ---HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISASLDHHAKIYEMT- 156 (239)
Q Consensus 83 ---~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~- 156 (239)
+...+.+++|+|++.++++++ ||.|++||++ ++.+..+.+|...|.+++|+|++. ++++++.|+.|++||++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~--~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~ 282 (435)
T 4e54_B 205 SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD--GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282 (435)
T ss_dssp CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS--SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC--cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence 345678999999999999999 7999999996 456677889999999999999886 78899999999999998
Q ss_pred cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 157 LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 157 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.+.. .......+|...|.+++|+|+|++|++++.||.|++||+.+++....+.
T Consensus 283 ~~~~------------------~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 283 VRGK------------------ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp CCSS------------------SCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred cccc------------------ceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence 2211 1122235789999999999999999999999999999999988766654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=212.41 Aligned_cols=198 Identities=13% Similarity=0.206 Sum_probs=166.6
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee---
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--- 81 (239)
+.||.|++||+.+++.+..+.+|. ..|.+++|+|.++++|++++.||.|++||+++++....+
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHG--------------NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCC--------------SCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred cCCCEEEEEEchhceEeeeecCCC--------------CcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 568999999999999999999998 999999999967899999999999999999999888876
Q ss_pred -cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE----------------------------EEEeccCCceEE
Q psy11036 82 -NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL----------------------------HKFTCHHKTVTS 131 (239)
Q Consensus 82 -~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~----------------------------~~~~~~~~~i~~ 131 (239)
.|...|.+++|+|++.++++++ |+.|++||++ .++.. .....|...|.+
T Consensus 158 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 158 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN-SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC-SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred ccccCceeEEEECCCCCEEEEecCCCCEEEEECC-CCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 5889999999999999999998 8999999997 33322 223348999999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcc-cce--------------Eeee------------------------ecceeEEEE
Q psy11036 132 LCLASGGKRLISASLDHHAKIYEMT-LKT--------------VSSF------------------------TGGLDVCIW 172 (239)
Q Consensus 132 i~~~~~~~~l~~~~~d~~i~i~d~~-~~~--------------~~~~------------------------~~~~~i~~~ 172 (239)
++|+ ++++++++.|+.|++||++ ... +..+ ..++.|++|
T Consensus 237 ~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vw 314 (366)
T 3k26_A 237 VRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVW 314 (366)
T ss_dssp EEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEE
T ss_pred EEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEE
Confidence 9998 7799999999999999987 221 2111 234569999
Q ss_pred EccCCC---EEEEEEecc--cCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 173 DMLGGG---KLLHKFTCH--HKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 173 d~~~~~---~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
|+.+.. .....+..| ...|.+++|+|++++|++++.||.|++||+.+
T Consensus 315 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 315 DLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp ECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 998743 255577777 78999999999999999999999999999853
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-32 Score=215.47 Aligned_cols=205 Identities=15% Similarity=0.225 Sum_probs=163.9
Q ss_pred CCCCCEEEEeeCCC---cc---eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCC---C
Q psy11036 4 DLPILIVALWDIPS---EA---QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTR---S 74 (239)
Q Consensus 4 ~~~dg~i~vwd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~---~ 74 (239)
.+.||.|+|||+.+ +. ....+ .|. ..|++++|+| ++++|++++.||.|++||+. +
T Consensus 82 ~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~--------------~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~ 145 (437)
T 3gre_A 82 GSDQGVIKIWNLKEIIVGEVYSSSLTY-DCS--------------STVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQ 145 (437)
T ss_dssp EETTSEEEEEEHHHHHTTCCCSCSEEE-ECS--------------SCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEE
T ss_pred ecCCceEEEeECcccccCcccceeeec-cCC--------------CCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccC
Confidence 35789999999876 33 22222 366 8999999999 89999999999999999994 4
Q ss_pred CCceeeec-------------CCCCEEEEE--EecCCcEEEEeC-CCcEEEEEccCCCeEEEEEec--cCCceEEEEEcC
Q psy11036 75 PDPVMSVN-------------HGSPVESVL--CLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTC--HHKTVTSLCLAS 136 (239)
Q Consensus 75 ~~~~~~~~-------------~~~~v~~~~--~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~--~~~~i~~i~~~~ 136 (239)
++....+. +...+.++. +++++.++++++ |+.|++||++ .++.+..+.. |...|++++|+|
T Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~h~~~v~~~~~s~ 224 (437)
T 3gre_A 146 ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR-TLERLQIIENSPRHGAVSSICIDE 224 (437)
T ss_dssp TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT-TCCEEEEEECCGGGCCEEEEEECT
T ss_pred CceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeeeEEEccCCCCCceEEEEECC
Confidence 54433221 456677777 557889999988 7999999998 7888888887 899999999999
Q ss_pred CCCEEEEEecCCeEEEEEcc-cceEeee---------------------------ecceeEEEEEccCCCEEEEEEec--
Q psy11036 137 GGKRLISASLDHHAKIYEMT-LKTVSSF---------------------------TGGLDVCIWDMLGGGKLLHKFTC-- 186 (239)
Q Consensus 137 ~~~~l~~~~~d~~i~i~d~~-~~~~~~~---------------------------~~~~~i~~~d~~~~~~~~~~~~~-- 186 (239)
++++|++++.||.|++||++ ++.+..+ ..++.|++||+++ ++.+..+.+
T Consensus 225 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~ 303 (437)
T 3gre_A 225 ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSD 303 (437)
T ss_dssp TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSS
T ss_pred CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCC
Confidence 99999999999999999998 4444432 1245599999986 555555553
Q ss_pred ------------------------ccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 187 ------------------------HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 187 ------------------------h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
|...|.+++|+ ++++|++|+.|+.|++||+.+++.+..+.
T Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 304 EQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp SCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred CCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence 55668889998 77999999999999999999988776665
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=213.61 Aligned_cols=210 Identities=23% Similarity=0.370 Sum_probs=181.0
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
+.||.|++||+.+++....+.+|. +.|.+++| ++++|++|+.||+|++||+.+++.+..+ .|
T Consensus 150 ~~dg~i~iwd~~~~~~~~~~~~h~--------------~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h 212 (435)
T 1p22_A 150 LRDNTIKIWDKNTLECKRILTGHT--------------GSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLIHH 212 (435)
T ss_dssp ESSSCEEEEESSSCCEEEEECCCS--------------SCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEECCC
T ss_pred eCCCeEEEEeCCCCeEEEEEcCCC--------------CcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEEEEcCC
Confidence 578999999999999999999998 99999998 4689999999999999999999988888 68
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCe--EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cce
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGK--LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 159 (239)
...|.+++|++ ..+++++ |+.|++||++.... ....+.+|...|.+++| +++++++++.|+.|++||++ ++.
T Consensus 213 ~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~ 288 (435)
T 1p22_A 213 CEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF 288 (435)
T ss_dssp CSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE
T ss_pred CCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE
Confidence 99999999974 4777777 89999999983322 22677889999999999 78899999999999999998 555
Q ss_pred Eeee--------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 160 VSSF--------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 160 ~~~~--------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
+..+ ..++.|++||+++ ++++..+.+|...|.+++| ++++|++|+.||.|++||+.+
T Consensus 289 ~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 289 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred EEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence 5544 2345699999987 6788889999999999998 788999999999999999977
Q ss_pred Ce---------eeEEec-CCCCeeeeEec
Q psy11036 220 FS---------PVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 220 ~~---------~~~~~~-~~~~v~~~~~s 238 (239)
++ ++..+. |.++|.+++|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 394 (435)
T 1p22_A 366 ALDPRAPAGTLCLRTLVEHSGRVFRLQFD 394 (435)
T ss_dssp HTSTTSCTTTTEEEEECCCSSCCCCEEEC
T ss_pred CCCccccccchheeeccCCCCCeEEEEeC
Confidence 65 677776 88899999884
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=205.57 Aligned_cols=174 Identities=20% Similarity=0.391 Sum_probs=156.3
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee---e---cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS---V---NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGG 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~---~---~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~ 115 (239)
+.|++++|+| ++++|++++ ||.|++||+.+++.... + .+...+.+++|+|+++++++++ ++.|++||++ .
T Consensus 52 ~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~ 128 (337)
T 1gxr_A 52 EVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA-A 128 (337)
T ss_dssp SCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC-C
T ss_pred CceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC-C
Confidence 8999999999 899999998 99999999987653322 2 5788999999999999999888 7999999998 4
Q ss_pred Ce--EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEE
Q psy11036 116 GK--LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTS 193 (239)
Q Consensus 116 ~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~ 193 (239)
++ ....+..|...|.+++|+|+++++++++.|+.|++||++ ..+....+..|...|.+
T Consensus 129 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~--------------------~~~~~~~~~~~~~~i~~ 188 (337)
T 1gxr_A 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH--------------------NQTLVRQFQGHTDGASC 188 (337)
T ss_dssp C--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT--------------------TTEEEEEECCCSSCEEE
T ss_pred CCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC--------------------CCceeeeeecccCceEE
Confidence 44 566778899999999999999999999999999999988 46677777889999999
Q ss_pred EEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 194 LCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 194 ~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
++|+|++++|++++.||.|++||+++++.+..+.+..++.+++|+|
T Consensus 189 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~ 234 (337)
T 1gxr_A 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP 234 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT
T ss_pred EEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECC
Confidence 9999999999999999999999999999999999999999999987
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=208.49 Aligned_cols=190 Identities=13% Similarity=0.140 Sum_probs=165.5
Q ss_pred EeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCC-CEEEEeeCCCeEEEEeCCCCCceeee---cCCCCE
Q psy11036 12 LWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSS-DIVISGSYDKTVNVYDTRSPDPVMSV---NHGSPV 87 (239)
Q Consensus 12 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~---~~~~~v 87 (239)
+|++.+.+....+.+|. ..|++++|+| ++ ++|++|+.||.|++||+.+++....+ .|...|
T Consensus 57 ~~~~~~~~~~~~~~~h~--------------~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v 121 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD--------------RRVTSLEWHP-THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAI 121 (383)
T ss_dssp HHHHTTCEEEEEECCCS--------------SCEEEEEECS-SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBE
T ss_pred cccccccceEEeccCCC--------------CCEEEEEECC-CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCce
Confidence 34455666777888888 9999999999 55 89999999999999999988877665 489999
Q ss_pred EEEEEec-CCcEEEEeC-CCcEEEEEccCCCeEEEEEecc---CCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEee
Q psy11036 88 ESVLCLP-SGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCH---HKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSS 162 (239)
Q Consensus 88 ~~~~~~~-~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 162 (239)
.+++|+| ++.++++++ |+.|++||++ . ..+..+..+ ...|.+++|+|++++|++++.|+.|++||++
T Consensus 122 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~------ 193 (383)
T 3ei3_B 122 TGMKFNQFNTNQLFVSSIRGATTLRDFS-G-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD------ 193 (383)
T ss_dssp EEEEEETTEEEEEEEEETTTEEEEEETT-S-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT------
T ss_pred eEEEeCCCCCCEEEEEeCCCEEEEEECC-C-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC------
Confidence 9999999 678888888 8999999997 3 555556544 4789999999999999999999999999987
Q ss_pred eecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC-eEEEEcCCceEEEEEccC----CeeeEEecCCCCeeeeEe
Q psy11036 163 FTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISASLDHHAKIYEMVN----FSPVHTLDYPSPVLSIDV 237 (239)
Q Consensus 163 ~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~i~iwd~~~----~~~~~~~~~~~~v~~~~~ 237 (239)
.+++..+.+|...|.+++|+|+++ +|++++.|+.|++||+.+ ++++..+.+...|.+++|
T Consensus 194 ---------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 258 (383)
T 3ei3_B 194 ---------------GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYF 258 (383)
T ss_dssp ---------------SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEE
T ss_pred ---------------CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEE
Confidence 556667789999999999999999 899999999999999998 778888889999999999
Q ss_pred cC
Q psy11036 238 SM 239 (239)
Q Consensus 238 sp 239 (239)
+|
T Consensus 259 s~ 260 (383)
T 3ei3_B 259 NP 260 (383)
T ss_dssp CT
T ss_pred cC
Confidence 87
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-32 Score=214.35 Aligned_cols=202 Identities=16% Similarity=0.208 Sum_probs=169.2
Q ss_pred CCCCEEEEeeCCC----------cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC
Q psy11036 5 LPILIVALWDIPS----------EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS 74 (239)
Q Consensus 5 ~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 74 (239)
+.+|.|++||+.+ .+++..+.+|. ..|++++|+|.+..+|++|+.||.|++|++.+
T Consensus 148 ~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~--------------~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 213 (430)
T 2xyi_A 148 TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ--------------KEGYGLSWNPNLNGYLLSASDDHTICLWDINA 213 (430)
T ss_dssp CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS--------------SCCCCEEECTTSTTEEEEECTTSCEEEEETTS
T ss_pred CCCCcEEEEECCCcccccCccccCCCcEEecCCC--------------CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCC
Confidence 5689999999976 56777888888 99999999994334999999999999999987
Q ss_pred CCc-------eeee-cCCCCEEEEEEec-CCcEEEEeC-CCcEEEEEccCCC--eEEEEEeccCCceEEEEEcCCCC-EE
Q psy11036 75 PDP-------VMSV-NHGSPVESVLCLP-SGGIFVTGG-GLDVCIWDMLGGG--KLLHKFTCHHKTVTSLCLASGGK-RL 141 (239)
Q Consensus 75 ~~~-------~~~~-~~~~~v~~~~~~~-~~~~l~~~~-~~~i~~~d~~~~~--~~~~~~~~~~~~i~~i~~~~~~~-~l 141 (239)
+.. ...+ .|...|.+++|+| ++.++++++ ++.|++||++... +.+..+..|...|++++|+|++. .+
T Consensus 214 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l 293 (430)
T 2xyi_A 214 TPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 293 (430)
T ss_dssp CCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred CCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEE
Confidence 432 2333 6889999999999 677888877 7999999998432 56777889999999999999987 68
Q ss_pred EEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC-eEEEEcCCceEEEEEccC-
Q psy11036 142 ISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISASLDHHAKIYEMVN- 219 (239)
Q Consensus 142 ~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~i~iwd~~~- 219 (239)
++|+.||.|++||++ +...++..+..|...|.+++|+|+++ +|++++.|+.|++||+..
T Consensus 294 ~tg~~dg~v~vwd~~-------------------~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 294 ATGSADKTVALWDLR-------------------NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEEETTSEEEEEETT-------------------CTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred EEEeCCCeEEEEeCC-------------------CCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 899999999999988 12455667788999999999999985 689999999999999987
Q ss_pred -------------CeeeEEec-CCCCeeeeEecC
Q psy11036 220 -------------FSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 220 -------------~~~~~~~~-~~~~v~~~~~sp 239 (239)
.+.+..+. |...|++++|+|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 388 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 388 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS
T ss_pred ccccCccccccCCcceEEEcCCCCCCceEEEECC
Confidence 25556655 677899999987
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=206.57 Aligned_cols=204 Identities=12% Similarity=0.234 Sum_probs=174.1
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC-----CeEEEEeCCCCCce-
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD-----KTVNVYDTRSPDPV- 78 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~v~vw~~~~~~~~- 78 (239)
+.||.|++||+.+++.+..+. +. ..|.+++|+| +++++++++.+ +.|++||+......
T Consensus 93 ~~dg~i~iwd~~~~~~~~~~~-~~--------------~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 93 SADYSIKLWDVSNGQCVATWK-SP--------------VPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp ETTTEEEEEETTTCCEEEEEE-CS--------------SCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred eCCCeEEEEECCCCcEEEEee-cC--------------CCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccce
Confidence 468999999999999988888 55 8899999999 89999999998 99999999766432
Q ss_pred ----------eee-cCCC--CEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEE
Q psy11036 79 ----------MSV-NHGS--PVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA 144 (239)
Q Consensus 79 ----------~~~-~~~~--~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 144 (239)
..+ .+.. .+.+++|+|+++.+++++ ++.|++||++...+.+..+..|...|.+++|+|++++|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS 236 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe
Confidence 222 3444 899999999999999988 79999999994478899999999999999999999999999
Q ss_pred ecCCeEEEEEcc-cceEeeee---------------------cce--------------eEEEEEccCCCEEEEEEeccc
Q psy11036 145 SLDHHAKIYEMT-LKTVSSFT---------------------GGL--------------DVCIWDMLGGGKLLHKFTCHH 188 (239)
Q Consensus 145 ~~d~~i~i~d~~-~~~~~~~~---------------------~~~--------------~i~~~d~~~~~~~~~~~~~h~ 188 (239)
+.|+.|++||++ .+.+..+. +.. .+.+||..+ .+++..+.+|.
T Consensus 237 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~ 315 (369)
T 3zwl_B 237 SRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGHF 315 (369)
T ss_dssp ETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT-CCEEEEEECCS
T ss_pred cCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-Ccchhheeccc
Confidence 999999999998 55544431 111 689999877 67778889999
Q ss_pred CcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEE
Q psy11036 189 KTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHT 225 (239)
Q Consensus 189 ~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 225 (239)
..|.+++|+|++++|++++.||.|++|++.++.....
T Consensus 316 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 316 GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFK 352 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCC
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhH
Confidence 9999999999999999999999999999987654443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=214.81 Aligned_cols=202 Identities=15% Similarity=0.251 Sum_probs=171.4
Q ss_pred CCCCEEEEeeCCC----cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC----
Q psy11036 5 LPILIVALWDIPS----EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD---- 76 (239)
Q Consensus 5 ~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~---- 76 (239)
+.||.|++||+.+ .+.+..+..|. ..|.+++|+|+++++|++++.|+.|++||+.+++
T Consensus 86 ~~dg~v~vw~~~~~~~~~~~~~~~~~h~--------------~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 86 LDNGSLELYSTNEANNAINSMARFSNHS--------------SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp ESSSCEEEECCSSTTSCCCEEEECCCSS--------------SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT
T ss_pred ccCCeEEEeecccccccccchhhccCCc--------------cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc
Confidence 3689999999987 45788888998 9999999999448999999999999999999876
Q ss_pred --ceeee----cCCCCEEEEEEecC-CcEEEEeC-CCcEEEEEccCCCeEEEEEecc------CCceEEEEEcCCC-CEE
Q psy11036 77 --PVMSV----NHGSPVESVLCLPS-GGIFVTGG-GLDVCIWDMLGGGKLLHKFTCH------HKTVTSLCLASGG-KRL 141 (239)
Q Consensus 77 --~~~~~----~~~~~v~~~~~~~~-~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~------~~~i~~i~~~~~~-~~l 141 (239)
....+ .|...|.+++|+|+ +.++++++ ++.|++||++ .++.+..+..+ ...|.+++|+|++ .++
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK-AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT-TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC-CCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence 33322 58889999999998 78888888 7999999998 78888888776 7899999999997 689
Q ss_pred EEEecCC---eEEEEEcc-c-ceEeee------------------------ecceeEEEEEccCCCEEEEEEecccCcEE
Q psy11036 142 ISASLDH---HAKIYEMT-L-KTVSSF------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVT 192 (239)
Q Consensus 142 ~~~~~d~---~i~i~d~~-~-~~~~~~------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~ 192 (239)
++++.|+ .|++||++ . ..+..+ ..++.+++||+.+ .+++..+.+|...|.
T Consensus 231 ~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~ 309 (416)
T 2pm9_A 231 ATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWCF 309 (416)
T ss_dssp EEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCCC
T ss_pred EEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCceE
Confidence 9999998 99999997 2 222221 1244599999987 677888999999999
Q ss_pred EEEEccCC-CeEEEEcCCceEEEEEccCCee
Q psy11036 193 SLCLASGG-KRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 193 ~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
+++|+|++ ++|++++.|+.|++||+.+++.
T Consensus 310 ~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 310 KTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp CEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred EEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 99999998 8999999999999999987654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=208.10 Aligned_cols=211 Identities=22% Similarity=0.387 Sum_probs=185.3
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N 82 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~ 82 (239)
.+.||.|++||+.+++.+..+.+|. +.|.+++|++ +++++|+.||+|++||+.+++....+ .
T Consensus 135 g~~dg~i~vwd~~~~~~~~~~~~h~--------------~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 197 (445)
T 2ovr_B 135 GSDDNTLKVWSAVTGKCLRTLVGHT--------------GGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYG 197 (445)
T ss_dssp EETTSCEEEEETTTCCEEEECCCCS--------------SCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EECCCcEEEEECCCCcEEEEEcCCC--------------CCEEEEEecC---CEEEEEeCCCeEEEEECCcCcEEEEECC
Confidence 4578999999999999999999999 9999999974 69999999999999999999888888 6
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceE
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTV 160 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~ 160 (239)
|...|.+++++ +..+++++ |+.|++||++ .++.+..+.+|...|.++++ +++++++++.|+.|++||++ ++.+
T Consensus 198 h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~ 272 (445)
T 2ovr_B 198 HTSTVRCMHLH--EKRVVSGSRDATLRVWDIE-TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL 272 (445)
T ss_dssp CSSCEEEEEEE--TTEEEEEETTSEEEEEESS-SCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEE
T ss_pred CCCcEEEEEec--CCEEEEEeCCCEEEEEECC-CCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEe
Confidence 89999999996 45677777 8999999998 78888899999999999999 78899999999999999998 5555
Q ss_pred eee--------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCC
Q psy11036 161 SSF--------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNF 220 (239)
Q Consensus 161 ~~~--------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~ 220 (239)
..+ ..++.+++||+++ ++.+..+.+|...+.++.++ +++|++++.||.|++||+.++
T Consensus 273 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 273 HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp EEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred EEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCC-CCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC
Confidence 444 2345699999987 67778889999999988774 679999999999999999999
Q ss_pred eeeEEec----CCCCeeeeEecC
Q psy11036 221 SPVHTLD----YPSPVLSIDVSM 239 (239)
Q Consensus 221 ~~~~~~~----~~~~v~~~~~sp 239 (239)
+++..+. +..+|.+++|++
T Consensus 350 ~~~~~~~~~~~~~~~v~~~~~~~ 372 (445)
T 2ovr_B 350 QCLQTLQGPNKHQSAVTCLQFNK 372 (445)
T ss_dssp CEEEEECSTTSCSSCEEEEEECS
T ss_pred cEEEEEccCCCCCCCEEEEEECC
Confidence 9999887 667899999864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=225.91 Aligned_cols=197 Identities=13% Similarity=0.079 Sum_probs=155.9
Q ss_pred CCCCEEEEeeCCCcce-----------eeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCC
Q psy11036 5 LPILIVALWDIPSEAQ-----------VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTR 73 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 73 (239)
+.||+|+|||+.+++. ..++.+|. ..|++++|++ + ..|++|+.||+|++||++
T Consensus 232 s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~--------------~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~ 295 (524)
T 2j04_B 232 SQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD--------------SLITTFDFLS-P-TTVVCGFKNGFVAEFDLT 295 (524)
T ss_dssp ETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT--------------TCEEEEEESS-S-SEEEEEETTSEEEEEETT
T ss_pred ecCCeEEEEEcCCCccccccceeecCceEEEEcCC--------------CCEEEEEecC-C-CeEEEEeCCCEEEEEECC
Confidence 4689999999987642 23556666 9999999998 4 489999999999999998
Q ss_pred CCC-ceeee-cCCCCEEEE--EEecCC-cEEEEeC-CCcEEEEEccCCCeEEEEEeccCC--ceEEEEEcCCCCEEEEEe
Q psy11036 74 SPD-PVMSV-NHGSPVESV--LCLPSG-GIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHK--TVTSLCLASGGKRLISAS 145 (239)
Q Consensus 74 ~~~-~~~~~-~~~~~v~~~--~~~~~~-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~ 145 (239)
++. +...+ .|...|.++ +|+|++ .+|++++ |++|++||++ ..+....+.+|.. .|.+++|+|+++.+++++
T Consensus 296 ~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~-~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~ 374 (524)
T 2j04_B 296 DPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK-DIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD 374 (524)
T ss_dssp BCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG-GHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC
T ss_pred CCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC-CCCcccccccccccCcccceEeCCCcCeEEEeC
Confidence 764 33445 699999999 567887 8888888 8999999998 5555555666653 578999999999999999
Q ss_pred cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEE
Q psy11036 146 LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHT 225 (239)
Q Consensus 146 ~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 225 (239)
.|++|++||++ ...++..+.+|...|.+++|+|++++|++|+.||+|++||+..+ .+..
T Consensus 375 ~d~tv~lwd~~--------------------~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~ 433 (524)
T 2j04_B 375 GASSLRAVPSR--------------------AAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHG 433 (524)
T ss_dssp SSSEEEEEETT--------------------CTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTC
T ss_pred CCCcEEEEECc--------------------ccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccc
Confidence 99999999988 34444556789999999999999999999999999999998543 2222
Q ss_pred ec------CCCCeeeeEecC
Q psy11036 226 LD------YPSPVLSIDVSM 239 (239)
Q Consensus 226 ~~------~~~~v~~~~~sp 239 (239)
.. ....+.+++|+|
T Consensus 434 ~~~~~~~~~~~~v~~v~~sp 453 (524)
T 2j04_B 434 IKNSSATQKSLRLWKWDYSI 453 (524)
T ss_dssp C------CCCCEEEECBCCS
T ss_pred cccCccceeeeEEEEeccCC
Confidence 11 112456777765
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=208.09 Aligned_cols=199 Identities=14% Similarity=0.099 Sum_probs=168.3
Q ss_pred CCCCEEEEeeCCCcce-----eeeeeCC-----ceeeccceeeccCCCCCeEEEEEe----cCCCCE-EEEeeCCCeEEE
Q psy11036 5 LPILIVALWDIPSEAQ-----VSTFTNH-----TTIYKVPLMLYSTPQDYVRAGTVS----PVSSDI-VISGSYDKTVNV 69 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-l~s~~~dg~v~v 69 (239)
+.||.|++||+.+++. ...+..| . ..|.+++|+ | ++++ |++++.||.|++
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKK--------------HSFWALKWGASNDR-LLSHRLVATDVKGTTYI 152 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGG--------------SCEEEEEEECCC-----CEEEEEEETTSCEEE
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCC--------------CcEEEEEEeeccCC-CCceEEEEEeCCCcEEE
Confidence 4689999999988886 7888887 5 889999999 8 7888 999999999999
Q ss_pred EeCCC------CCcee-----ee--------cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEec---c-
Q psy11036 70 YDTRS------PDPVM-----SV--------NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTC---H- 125 (239)
Q Consensus 70 w~~~~------~~~~~-----~~--------~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~---~- 125 (239)
||+.+ ++.+. .+ .|...+.+++|+|++ .+++++ ++.|++||++ ..+.+..+.. |
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS-TLRPLYNFESQHSMI 230 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT-TTEEEEEEECCC---
T ss_pred EeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECC-CCceeEEEecccccc
Confidence 99988 65554 44 268899999999999 888888 7999999998 7888999998 8
Q ss_pred --CCceEEEEEcCCCCEEEEEecC---CeEEEEEcc-cceEeee-----------------------------------e
Q psy11036 126 --HKTVTSLCLASGGKRLISASLD---HHAKIYEMT-LKTVSSF-----------------------------------T 164 (239)
Q Consensus 126 --~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~-~~~~~~~-----------------------------------~ 164 (239)
...|.+++|+|++++|++++.| +.|++||++ .+.+..+ .
T Consensus 231 ~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 310 (397)
T 1sq9_A 231 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 310 (397)
T ss_dssp CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred ccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe
Confidence 9999999999999999999999 999999997 4433332 1
Q ss_pred cceeEEEEEccCCCEEEEEEe------cc---------------cCcEEEEEEccCC----------CeEEEEcCCceEE
Q psy11036 165 GGLDVCIWDMLGGGKLLHKFT------CH---------------HKTVTSLCLASGG----------KRLISASLDHHAK 213 (239)
Q Consensus 165 ~~~~i~~~d~~~~~~~~~~~~------~h---------------~~~v~~~~~s~~~----------~~l~s~s~d~~i~ 213 (239)
.++.|++||+.+ .+++..+. +| ...|.+++|+|++ ++|++++.||.|+
T Consensus 311 ~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 311 WDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR 389 (397)
T ss_dssp TTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred CCCeEEEEEcCC-CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence 244599999987 67888888 77 9999999999998 7999999999999
Q ss_pred EEEccCCe
Q psy11036 214 IYEMVNFS 221 (239)
Q Consensus 214 iwd~~~~~ 221 (239)
+|++.+|+
T Consensus 390 iw~~~~g~ 397 (397)
T 1sq9_A 390 WFREAGGK 397 (397)
T ss_dssp EEEEEC--
T ss_pred EEEcCCCC
Confidence 99998864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-31 Score=204.00 Aligned_cols=201 Identities=19% Similarity=0.256 Sum_probs=163.7
Q ss_pred CCCCEEEEeeCCCcc-eeeeeeCCceeeccceeeccCCCCCeEEEEE------ecCCCCEEEEeeCCCeEEEEeCCCCC-
Q psy11036 5 LPILIVALWDIPSEA-QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTV------SPVSSDIVISGSYDKTVNVYDTRSPD- 76 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~l~s~~~dg~v~vw~~~~~~- 76 (239)
+.||.|++||+.+++ .+..+.+|. ..|.+++| +| ++++|++++.||.|++||+++++
T Consensus 87 ~~dg~i~iwd~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~ 151 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEMPVYSVKGHK--------------EIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDD 151 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCS--------------SCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSS
T ss_pred cCCCeEEEEeCCCCCccEEEEEecc--------------cceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCC
Confidence 458999999999888 888999998 99999965 56 78899999999999999999886
Q ss_pred ceeee-cC----CCCEEEEE----EecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcC---CCCEEEE
Q psy11036 77 PVMSV-NH----GSPVESVL----CLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS---GGKRLIS 143 (239)
Q Consensus 77 ~~~~~-~~----~~~v~~~~----~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~ 143 (239)
+...+ .+ ...+.+++ |+|++.++++++ ++.|++||++ ..+.. ....|...|.+++|+| ++.++++
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~ 229 (357)
T 3i2n_A 152 PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR-NMALR-WETNIKNGVCSLEFDRKDISMNKLVA 229 (357)
T ss_dssp CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT-TTEEE-EEEECSSCEEEEEESCSSSSCCEEEE
T ss_pred cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc-cCcee-eecCCCCceEEEEcCCCCCCCCEEEE
Confidence 56655 23 33889998 678999999998 7999999998 55554 3466899999999999 8999999
Q ss_pred EecCCeEEEEEcc-cceEee----------------------------eecceeEEEEEccCCC----------------
Q psy11036 144 ASLDHHAKIYEMT-LKTVSS----------------------------FTGGLDVCIWDMLGGG---------------- 178 (239)
Q Consensus 144 ~~~d~~i~i~d~~-~~~~~~----------------------------~~~~~~i~~~d~~~~~---------------- 178 (239)
++.|+.|++||++ .+.+.. ...++.+++||++...
T Consensus 230 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~ 309 (357)
T 3i2n_A 230 TSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAG 309 (357)
T ss_dssp EESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCC
T ss_pred ECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccc
Confidence 9999999999987 221110 0234569999987532
Q ss_pred --EEEEEEecccCcEEEEEEccCCCeEE-EEcCCceEEEEEccCCee
Q psy11036 179 --KLLHKFTCHHKTVTSLCLASGGKRLI-SASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 179 --~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~d~~i~iwd~~~~~~ 222 (239)
+.+..+.+|...|.+++|+|++++|+ +++.||.|++||+.+.+.
T Consensus 310 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 310 SVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 46778899999999999999999998 899999999999987654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-31 Score=207.82 Aligned_cols=205 Identities=22% Similarity=0.356 Sum_probs=170.0
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc-eeee-c
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP-VMSV-N 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~-~~~~-~ 82 (239)
+.||.|+|||+++++.+..+.+|. ..+.+++++ +.+|++|+.|+.+++||...... +..+ .
T Consensus 166 s~Dg~v~iWd~~~~~~~~~~~~h~--------------~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~ 228 (420)
T 4gga_A 166 TSSAEVQLWDVQQQKRLRNMTSHS--------------ARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSG 228 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCS--------------SCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred ECCCeEEEEEcCCCcEEEEEeCCC--------------CceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecc
Confidence 468999999999999999999998 899998885 47999999999999999987544 3444 6
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCC---eEEEEEeccCCceEEEEEcCCCC-EEEE--EecCCeEEEEEc
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGG---KLLHKFTCHHKTVTSLCLASGGK-RLIS--ASLDHHAKIYEM 155 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~---~~~~~~~~~~~~i~~i~~~~~~~-~l~~--~~~d~~i~i~d~ 155 (239)
|...+..+.++|++.++++++ |+.+++|+..... ..+.....|...|.+++|+|.+. .+++ |+.|+.|++||+
T Consensus 229 h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~ 308 (420)
T 4gga_A 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308 (420)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred cccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence 899999999999999999998 8999999997322 24567778999999999999664 5554 457999999999
Q ss_pred c-cceEeee---------------------e--cceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCce
Q psy11036 156 T-LKTVSSF---------------------T--GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHH 211 (239)
Q Consensus 156 ~-~~~~~~~---------------------~--~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~ 211 (239)
. ++.+..+ . .++.|++||..+ .+++..+.+|.+.|.+++|+|+|++|+||+.|++
T Consensus 309 ~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~-~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~t 387 (420)
T 4gga_A 309 CSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVASAAADET 387 (420)
T ss_dssp TTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred CccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 8 5544443 2 245699999986 7788899999999999999999999999999999
Q ss_pred EEEEEccCCeeeEEec
Q psy11036 212 AKIYEMVNFSPVHTLD 227 (239)
Q Consensus 212 i~iwd~~~~~~~~~~~ 227 (239)
|+|||+....+....+
T Consensus 388 vriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 388 LRLWRCFELDPARRRE 403 (420)
T ss_dssp EEEECCSCSSCC----
T ss_pred EEEEECCCCCccchhh
Confidence 9999998776665554
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=204.63 Aligned_cols=212 Identities=11% Similarity=0.075 Sum_probs=176.0
Q ss_pred CCCCEEEEeeCCCcc---eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCC-EEEEeeCCCeEEEEeC-CCCCcee
Q psy11036 5 LPILIVALWDIPSEA---QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSD-IVISGSYDKTVNVYDT-RSPDPVM 79 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~v~vw~~-~~~~~~~ 79 (239)
+.||.|++||+.+++ ....+..|. ..|.+++|+| +++ +|++|+.||.|++||+ .+++...
T Consensus 30 ~~d~~v~iw~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 94 (342)
T 1yfq_A 30 SWDGSLTVYKFDIQAKNVDLLQSLRYK--------------HPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSFQA 94 (342)
T ss_dssp ETTSEEEEEEEETTTTEEEEEEEEECS--------------SCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSEEE
T ss_pred cCCCeEEEEEeCCCCccccceeeeecC--------------CceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCCceEe
Confidence 468999999998876 345556777 8999999999 789 9999999999999999 8776644
Q ss_pred eec--CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCC---------CeEEEEEeccCCceEEEEEcCCCCEEEEEecC
Q psy11036 80 SVN--HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGG---------GKLLHKFTCHHKTVTSLCLASGGKRLISASLD 147 (239)
Q Consensus 80 ~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 147 (239)
... |...|.+++|+| +..+++++ |+.|++||++ . .+.+..+. |...|.+++|+|++ +++++.|
T Consensus 95 ~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d 169 (342)
T 1yfq_A 95 LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPR-NYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNN 169 (342)
T ss_dssp CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHH-HHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEEST
T ss_pred ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccc-ccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCC
Confidence 446 999999999999 88888888 8999999998 4 44444444 88899999999887 9999999
Q ss_pred CeEEEEEccc---ceEee-------------e-----------ecceeEEEEEccCC-----CEEEEEEecccC------
Q psy11036 148 HHAKIYEMTL---KTVSS-------------F-----------TGGLDVCIWDMLGG-----GKLLHKFTCHHK------ 189 (239)
Q Consensus 148 ~~i~i~d~~~---~~~~~-------------~-----------~~~~~i~~~d~~~~-----~~~~~~~~~h~~------ 189 (239)
+.|++||++. ..... + ..++.+.+|++... .+....+..|..
T Consensus 170 ~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (342)
T 1yfq_A 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249 (342)
T ss_dssp TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCS
T ss_pred CeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccc
Confidence 9999999874 11100 0 12345899999875 367777888865
Q ss_pred ---cEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-C-CCCeeeeE
Q psy11036 190 ---TVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-Y-PSPVLSID 236 (239)
Q Consensus 190 ---~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~-~~~v~~~~ 236 (239)
.|.+++|+|++++|++++.||.|++||+.+++.+..+. + ..+|.+++
T Consensus 250 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301 (342)
T ss_dssp SCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred cceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec
Confidence 99999999999999999999999999999999999988 5 78888876
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-31 Score=206.38 Aligned_cols=209 Identities=19% Similarity=0.263 Sum_probs=158.1
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
+.||.|++||+.+++....+.... ...........+...|.+++|+|+++++|++++.||.|++||+.+++....+.+.
T Consensus 63 ~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 141 (408)
T 4a11_B 63 GSDGVIVLYDLENSSRQSYYTCKA-VCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFE 141 (408)
T ss_dssp ETTSCEEEEECCCCSSSSCEEECE-EEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred cCCCeEEEEECCCCcccceEeccc-cccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCC
Confidence 468999999999887655553100 0000000001122899999999977789999999999999999999988888888
Q ss_pred CCEEEEEEecCC---cEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCC-EEEEEecCCeEEEEEcc-cc
Q psy11036 85 SPVESVLCLPSG---GIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISASLDHHAKIYEMT-LK 158 (239)
Q Consensus 85 ~~v~~~~~~~~~---~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~-~~ 158 (239)
..+.++.++|.+ .++++++ ++.|++||++ .++.+..+..|...|.+++|+|++. .+++++.||.|++||++ ..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~ 220 (408)
T 4a11_B 142 ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK-SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220 (408)
T ss_dssp SCEEEEEECSSCSSCCEEEEEESSSSEEEEESS-SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS
T ss_pred CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC-CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC
Confidence 999999999854 4888877 7999999998 7788888999999999999999998 58899999999999998 21
Q ss_pred -eEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCe
Q psy11036 159 -TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFS 221 (239)
Q Consensus 159 -~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~ 221 (239)
.+..+..... ............|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 221 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 221 GCLITLDQHNG------KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278 (408)
T ss_dssp CCSEECCTTTT------CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred ccccccccccc------ccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence 2222200000 00011111225688999999999999999999999999999987643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=211.83 Aligned_cols=164 Identities=18% Similarity=0.173 Sum_probs=141.8
Q ss_pred CCCCeEEEEEecCCCCEE-EEeeCCCeEEEEeCC--CCCceeee---cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEcc
Q psy11036 41 PQDYVRAGTVSPVSSDIV-ISGSYDKTVNVYDTR--SPDPVMSV---NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDML 113 (239)
Q Consensus 41 ~~~~v~~~~~~~~~~~~l-~s~~~dg~v~vw~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~ 113 (239)
+.+.|.+++|+| ++++| ++++.||.|++||+. +++....+ .+...|.+++|+|++++|++++ ++.+.+|++.
T Consensus 101 ~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 101 IYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence 345799999999 67775 899999999999999 88877776 4678999999999999999998 7999999997
Q ss_pred CCCeE----EEEEeccCCceEEEEEcCC---CCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEE-Ee
Q psy11036 114 GGGKL----LHKFTCHHKTVTSLCLASG---GKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHK-FT 185 (239)
Q Consensus 114 ~~~~~----~~~~~~~~~~i~~i~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~ 185 (239)
.... ...+.+|...|.+++|+|+ +++|++++.|+.|++||++ ..+.+.. +.
T Consensus 180 -~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~--------------------~~~~~~~~~~ 238 (450)
T 2vdu_B 180 -SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP--------------------QCFIVDKWLF 238 (450)
T ss_dssp -SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES--------------------CTTCEEEECC
T ss_pred -CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC--------------------CCceeeeeec
Confidence 4433 2366789999999999999 9999999999999999988 2333333 45
Q ss_pred cccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 186 CHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 186 ~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
+|...|.+++|+ ++++|++++.|+.|++||+.+++++..+.
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence 899999999999 99999999999999999999999888875
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-30 Score=207.74 Aligned_cols=219 Identities=15% Similarity=0.072 Sum_probs=170.4
Q ss_pred CCCCCEEEEeeCC--Ccceeeeee--CCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee
Q psy11036 4 DLPILIVALWDIP--SEAQVSTFT--NHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM 79 (239)
Q Consensus 4 ~~~dg~i~vwd~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 79 (239)
.+.||.|++||+. +++.+..+. .+. ..|.+++|+| ++.+|++|+.||.+++|++.+++...
T Consensus 121 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--------------~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~ 185 (450)
T 2vdu_B 121 ADSDKSLLVFDVDKTSKNVLKLRKRFCFS--------------KRPNAISIAE-DDTTVIIADKFGDVYSIDINSIPEEK 185 (450)
T ss_dssp EGGGTEEEEEEECSSSSSCEEEEEEEECS--------------SCEEEEEECT-TSSEEEEEETTSEEEEEETTSCCCSS
T ss_pred ECCCCeEEEEECcCCCCceeeeeecccCC--------------CCceEEEEcC-CCCEEEEEeCCCcEEEEecCCccccc
Confidence 3468999999999 888888886 455 7899999999 89999999999999999998877553
Q ss_pred ----ee-cCCCCEEEEEEecC---CcEEEEeC-CCcEEEEEccCCCeEEEE-EeccCCceEEEEEcCCCCEEEEEecCCe
Q psy11036 80 ----SV-NHGSPVESVLCLPS---GGIFVTGG-GLDVCIWDMLGGGKLLHK-FTCHHKTVTSLCLASGGKRLISASLDHH 149 (239)
Q Consensus 80 ----~~-~~~~~v~~~~~~~~---~~~l~~~~-~~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 149 (239)
.+ .|...|.+++|+|+ ++++++++ |+.|++||++ .++.+.. +.+|...|.+++|+ ++++|++++.|+.
T Consensus 186 ~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~ 263 (450)
T 2vdu_B 186 FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP-QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDK 263 (450)
T ss_dssp CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES-CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSE
T ss_pred ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC-CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCe
Confidence 44 68899999999999 98999888 8999999998 6666665 56899999999999 9999999999999
Q ss_pred EEEEEcc-cceEeeeecceeEE--EEEccCC--CEEEEEEecccCcEEEEEEccCCCeEEEEc-CCceEEEEEc--cCC-
Q psy11036 150 AKIYEMT-LKTVSSFTGGLDVC--IWDMLGG--GKLLHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEM--VNF- 220 (239)
Q Consensus 150 i~i~d~~-~~~~~~~~~~~~i~--~~d~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~d~~i~iwd~--~~~- 220 (239)
|++||++ ++.+..+.....+. .++.... .............|.+++|+|++++|++++ .|+.|++|++ .++
T Consensus 264 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~ 343 (450)
T 2vdu_B 264 IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKG 343 (450)
T ss_dssp EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTT
T ss_pred EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCC
Confidence 9999998 55444442110000 0000000 000000012346799999999999999998 8999999999 666
Q ss_pred --eeeEEecCCCCeeeeEecC
Q psy11036 221 --SPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 221 --~~~~~~~~~~~v~~~~~sp 239 (239)
+.+..+.....+.+++|+|
T Consensus 344 ~l~~~~~~~~~~~v~~~~~~~ 364 (450)
T 2vdu_B 344 DLALKQIITFPYNVISLSAHN 364 (450)
T ss_dssp CEEEEEEEECSSCEEEEEEET
T ss_pred ceeeccEeccCCceEEEEecC
Confidence 7777787668999999987
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-32 Score=214.16 Aligned_cols=175 Identities=18% Similarity=0.190 Sum_probs=145.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee---cCCCCEEEEEEec-CCcEEEEeC-CCcEEEEEccCCCe
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV---NHGSPVESVLCLP-SGGIFVTGG-GLDVCIWDMLGGGK 117 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~-~~~i~~~d~~~~~~ 117 (239)
..|++++|+|.++++|++|+.||+|+|||+.+++....+ +|.+.|++++|+| ++.+|++++ |++|++||++ ...
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~-~~~ 198 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK-GNI 198 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT-SCE
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc-CCc
Confidence 889999999977889999999999999999877654433 6999999999998 688999998 8999999997 443
Q ss_pred EEEEEec--cCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEE
Q psy11036 118 LLHKFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLC 195 (239)
Q Consensus 118 ~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~ 195 (239)
....... +...+.+++|+|++++|++|+.||.|++||++ .+.+..+.+|...|.+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~---------------------~~~~~~~~~h~~~v~~v~ 257 (435)
T 4e54_B 199 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD---------------------GKELWNLRMHKKKVTHVA 257 (435)
T ss_dssp EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS---------------------SCBCCCSBCCSSCEEEEE
T ss_pred eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC---------------------cceeEEEecccceEEeee
Confidence 3322222 33467899999999999999999999999988 333444578999999999
Q ss_pred EccCCC-eEEEEcCCceEEEEEccCCeeeEEe----cCCCCeeeeEecC
Q psy11036 196 LASGGK-RLISASLDHHAKIYEMVNFSPVHTL----DYPSPVLSIDVSM 239 (239)
Q Consensus 196 ~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~----~~~~~v~~~~~sp 239 (239)
|+|++. +|++++.|+.|++||+++++....+ .|..+|++++|+|
T Consensus 258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp 306 (435)
T 4e54_B 258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP 306 (435)
T ss_dssp ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT
T ss_pred ecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC
Confidence 999876 6789999999999999887654433 3788999999987
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=224.10 Aligned_cols=203 Identities=17% Similarity=0.209 Sum_probs=171.0
Q ss_pred CCCCEEEEeeCC--CcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCC--CCEEEEeeCCCeEEEEeCCCCC--ce
Q psy11036 5 LPILIVALWDIP--SEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVS--SDIVISGSYDKTVNVYDTRSPD--PV 78 (239)
Q Consensus 5 ~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~v~vw~~~~~~--~~ 78 (239)
+.||.|+|||+. +++.+..+.+|. ++|++++|+| + +++|++|+.||.|++||+.+++ ..
T Consensus 28 ~~dg~I~vwd~~~~~~~~~~~l~~h~--------------~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~ 92 (753)
T 3jro_A 28 SSDKTIKIFEVEGETHKLIDTLTGHE--------------GPVWRVDWAH-PKFGTILASCSYDGKVLIWKEENGRWSQI 92 (753)
T ss_dssp ETTTEEEEEEEETTEEEEEEEECCCS--------------SCEEEEEECC-TTSCSEEEEEETTSCEEEEEEETTEEEEE
T ss_pred ECCCcEEEEecCCCCCccceeccCCc--------------CceEEEEecC-CCCCCEEEEEeCCCeEEEEECCCCccccc
Confidence 368999999997 557788899998 9999999998 5 8999999999999999999886 44
Q ss_pred eee-cCCCCEEEEEEecC--CcEEEEeC-CCcEEEEEccCC-CeEEEEEeccCCceEEEEEcC-------------CCCE
Q psy11036 79 MSV-NHGSPVESVLCLPS--GGIFVTGG-GLDVCIWDMLGG-GKLLHKFTCHHKTVTSLCLAS-------------GGKR 140 (239)
Q Consensus 79 ~~~-~~~~~v~~~~~~~~--~~~l~~~~-~~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~-------------~~~~ 140 (239)
..+ .|...|.+++|+|+ +..+++++ ||.|++||++.. ......+..|...|.+++|+| ++..
T Consensus 93 ~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 93 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCC
T ss_pred ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCE
Confidence 444 68999999999999 89999988 799999999843 134456778999999999999 5899
Q ss_pred EEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC---CCeEEEEcCCceEEEEE
Q psy11036 141 LISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG---GKRLISASLDHHAKIYE 216 (239)
Q Consensus 141 l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~s~d~~i~iwd 216 (239)
+++|+.||.|++||++ ... ...+...+.+|...|.+++|+|+ +++|++++.||.|++||
T Consensus 173 l~sgs~dg~I~iwd~~~~~~-----------------~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 173 FVTGGADNLVKIWKYNSDAQ-----------------TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp EEEEETTSCEEEEEEETTTT-----------------EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred EEEEECCCeEEEEeccCCcc-----------------cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 9999999999999988 110 12556677899999999999999 89999999999999999
Q ss_pred ccCCe-----eeEE-ecCCCCeeeeEecC
Q psy11036 217 MVNFS-----PVHT-LDYPSPVLSIDVSM 239 (239)
Q Consensus 217 ~~~~~-----~~~~-~~~~~~v~~~~~sp 239 (239)
+.+++ .+.. ..+...|++++|+|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 264 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSL 264 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECT
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcC
Confidence 98874 2222 22778999999987
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-30 Score=212.34 Aligned_cols=216 Identities=16% Similarity=0.219 Sum_probs=177.1
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCC---CeEEEEEecCC-CCEEEEeeCCCeEEEEeCCCCCceee
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQD---YVRAGTVSPVS-SDIVISGSYDKTVNVYDTRSPDPVMS 80 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~-~~~l~s~~~dg~v~vw~~~~~~~~~~ 80 (239)
+.|+.|++||+.+++.+..+..|. . .|.+++|+| + +++|++++.||.|++||+.+++.+..
T Consensus 180 ~~d~~v~vwd~~~~~~~~~~~~~~--------------~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 180 GDDGSVVFYQGPPFKFSASDRTHH--------------KQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp ETTTEEEEEETTTBEEEEEECSSS--------------CTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred eCCCcEEEEeCCCcceeeeecccC--------------CCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence 357999999999999999999998 7 899999999 6 99999999999999999999999888
Q ss_pred e-----cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEecc----CCceEEEEEcCCCCEEEEEecCCeE
Q psy11036 81 V-----NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCH----HKTVTSLCLASGGKRLISASLDHHA 150 (239)
Q Consensus 81 ~-----~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~d~~i 150 (239)
+ .|...|.+++|+ ++.++++++ |+.|++||++ .++.+..+..+ ...+.++.|. ++.++++++.|+.|
T Consensus 245 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i 321 (615)
T 1pgu_A 245 IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT-TSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTL 321 (615)
T ss_dssp CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT-TTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCE
T ss_pred ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC-CCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCE
Confidence 8 789999999999 999999988 7999999998 77888877766 3556666664 66677777777777
Q ss_pred EEEEcc-cceEeeee-----------------------------------------------------------------
Q psy11036 151 KIYEMT-LKTVSSFT----------------------------------------------------------------- 164 (239)
Q Consensus 151 ~i~d~~-~~~~~~~~----------------------------------------------------------------- 164 (239)
++||++ ++.+..+.
T Consensus 322 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~ 401 (615)
T 1pgu_A 322 NFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGIT 401 (615)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEE
T ss_pred EEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcc
Confidence 777765 22211110
Q ss_pred --------------------------------------------------------------c-ceeEEEEEccCCCEEE
Q psy11036 165 --------------------------------------------------------------G-GLDVCIWDMLGGGKLL 181 (239)
Q Consensus 165 --------------------------------------------------------------~-~~~i~~~d~~~~~~~~ 181 (239)
. ++.+++||+.+. +..
T Consensus 402 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~-~~~ 480 (615)
T 1pgu_A 402 KHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL-EVS 480 (615)
T ss_dssp EEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE-EEE
T ss_pred cCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCc-ccc
Confidence 0 334555555442 222
Q ss_pred -EEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec--CCCCeeeeEecC
Q psy11036 182 -HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 182 -~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp 239 (239)
..+..|...|.+++|+|++++|++++.||.|++||+.+++++..+. |...|++++|+|
T Consensus 481 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp 541 (615)
T 1pgu_A 481 FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 541 (615)
T ss_dssp EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred ccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcC
Confidence 4556788999999999999999999999999999999999999887 888999999987
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=209.45 Aligned_cols=194 Identities=10% Similarity=0.073 Sum_probs=155.1
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCC---------C
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTR---------S 74 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~---------~ 74 (239)
.+.||.|++||+.+++.+..+. . ..|.++.++| . +++++.|++|++|+.. +
T Consensus 54 g~~Dg~v~iwd~~~~~~~~~~~--~--------------~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 54 RCEDGALHFTQLKDSKTITTIT--T--------------PNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp EEETTEEEEEEESSSSCEEEEE--E--------------ECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred ECCCCcEEEEECCCCcEEEEEe--c--------------CCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCC
Confidence 4679999999999999888877 3 5688889998 4 9999999999999765 4
Q ss_pred CCceeee--cCCCCEEEEEEec--CCcEEEEeC-CCcEEEEEccCCCeEEEEEe-ccCCceEEEEEcCCCCEEEEEecCC
Q psy11036 75 PDPVMSV--NHGSPVESVLCLP--SGGIFVTGG-GLDVCIWDMLGGGKLLHKFT-CHHKTVTSLCLASGGKRLISASLDH 148 (239)
Q Consensus 75 ~~~~~~~--~~~~~v~~~~~~~--~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~ 148 (239)
++.+..+ .|..+|.+++|+| +++++++++ |+.|++||++ .++...... .|...+.+++|+|++.+|++|+.|+
T Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg 192 (343)
T 3lrv_A 114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE-DDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG 192 (343)
T ss_dssp CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS-SSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC-CCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence 4444444 4668899999999 999999888 8999999998 666665553 4556899999999999999999999
Q ss_pred eEEEEEcccceEeeeecceeEEEEEccCCCEEE-EEEec-ccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEe
Q psy11036 149 HAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLL-HKFTC-HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226 (239)
Q Consensus 149 ~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~-h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 226 (239)
.|++||++ ..+.. ..+.. |..+|.+++|+|++.+|++++ |+.|++||+++++.+..+
T Consensus 193 ~i~iwd~~--------------------~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 193 ILDVYNLS--------------------SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY 251 (343)
T ss_dssp CEEEEESS--------------------CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS
T ss_pred EEEEEECC--------------------CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee
Confidence 99999998 22323 44566 999999999999999999999 559999999998776555
Q ss_pred c----CCCCee--eeEecC
Q psy11036 227 D----YPSPVL--SIDVSM 239 (239)
Q Consensus 227 ~----~~~~v~--~~~~sp 239 (239)
. +...+. +++|+|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDD 270 (343)
T ss_dssp CCCBC-----CCEEEEECT
T ss_pred cccccccccccceEEEECC
Confidence 4 223343 588876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-30 Score=219.56 Aligned_cols=205 Identities=19% Similarity=0.229 Sum_probs=178.5
Q ss_pred ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCc
Q psy11036 19 AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGG 97 (239)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 97 (239)
+..+.+.+|. +.|++++|+| ++.+|++++.||.|++||+.+++.+..+ .|..+|.+++|+|+++
T Consensus 4 ~~~~~~~~h~--------------~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 4 DIKKTFSNRS--------------DRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN 68 (814)
T ss_dssp CCEEEEEEEC--------------SCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT
T ss_pred ccceeeecCC--------------CceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCC
Confidence 4456778888 9999999999 8999999999999999999999888888 6999999999999999
Q ss_pred EEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-c-ceEeee-----------
Q psy11036 98 IFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-L-KTVSSF----------- 163 (239)
Q Consensus 98 ~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~----------- 163 (239)
++++++ |+.|++||+. +++.+..+.+|...|.+++|+|++.+|++++.||.|++||++ . .....+
T Consensus 69 ~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYN-TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (814)
T ss_dssp EEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE
T ss_pred EEEEEeCCCeEEEEECC-CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE
Confidence 999998 7999999998 788889999999999999999999999999999999999998 3 322222
Q ss_pred ------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc--CCCeEEEEcCCceEEEEEccCCeeeEEec-C
Q psy11036 164 ------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS--GGKRLISASLDHHAKIYEMVNFSPVHTLD-Y 228 (239)
Q Consensus 164 ------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~ 228 (239)
..++.+.+||+.+..........+...+..++|+| ++.+|++++.||.|++||+.+++.+..+. +
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 227 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 22455999999774444433344558899999999 99999999999999999999999999988 7
Q ss_pred CCCeeeeEecC
Q psy11036 229 PSPVLSIDVSM 239 (239)
Q Consensus 229 ~~~v~~~~~sp 239 (239)
...|.+++|+|
T Consensus 228 ~~~v~~~~~~~ 238 (814)
T 3mkq_A 228 MSNVSFAVFHP 238 (814)
T ss_dssp SSCEEEEEECS
T ss_pred CCCEEEEEEcC
Confidence 88999999987
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=227.20 Aligned_cols=212 Identities=10% Similarity=-0.008 Sum_probs=162.7
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
+.||.|+||+..+.+....+. |. .+|.+++|+| +++|++++.|++|++||+.+++.+..+.+.
T Consensus 36 s~Dg~I~lw~~~~~~~~~~~~-~~--------------~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~ 98 (902)
T 2oaj_A 36 TVTGEVHIYGQQQVEVVIKLE-DR--------------SAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQKVLTTVFVP 98 (902)
T ss_dssp ETTSEEEEECSTTCEEEEECS-SC--------------CCEEEEEEET--TTEEEEEETTCEEEEEETTTCSEEEEEECS
T ss_pred eCCCEEEEEeCCCcEEEEEcC-CC--------------CCEEEEEEcC--CCEEEEEECcCeEEEEECCCCcEEEEEcCC
Confidence 468999999998777655544 55 8899999999 459999999999999999999988888888
Q ss_pred CCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE-----------EEEeccCCceEEEEEcCC-CCEEEEEecCCeEE
Q psy11036 85 SPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL-----------HKFTCHHKTVTSLCLASG-GKRLISASLDHHAK 151 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~-----------~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~ 151 (239)
..|++++|+|+++++++++ ||.|++||++ ..+.. ..+.+|.++|.+++|+|+ +..+++++.|+.|
T Consensus 99 ~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~-~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v- 176 (902)
T 2oaj_A 99 GKITSIDTDASLDWMLIGLQNGSMIVYDID-RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL- 176 (902)
T ss_dssp SCEEEEECCTTCSEEEEEETTSCEEEEETT-TTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-
T ss_pred CCEEEEEECCCCCEEEEEcCCCcEEEEECC-CCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-
Confidence 8999999999999999998 8999999998 55442 123568899999999996 4789999999999
Q ss_pred EEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEE--ec-
Q psy11036 152 IYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHT--LD- 227 (239)
Q Consensus 152 i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~--~~- 227 (239)
+||++ .+.+..+.+.... ........ ......|...|.+++|+|+|++|++++.||.|++||+++++++.. +.
T Consensus 177 lWd~~~~~~~~~~~~~~~~--g~~~~~~~-~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~ 253 (902)
T 2oaj_A 177 TYSLVENEIKQSFIYELPP--FAPGGDFS-EKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFE 253 (902)
T ss_dssp EEETTTTEEEEEECCCBCT--TCCCSTTC-CCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSC
T ss_pred EEECCCCceEEEEecccCC--cCCCcccc-cccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecc
Confidence 99998 3333333110000 00000000 000123467899999999999999999999999999999988764 21
Q ss_pred ----------------CCCCeeeeEec
Q psy11036 228 ----------------YPSPVLSIDVS 238 (239)
Q Consensus 228 ----------------~~~~v~~~~~s 238 (239)
+..+|++++|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~ 280 (902)
T 2oaj_A 254 TEINVPQPDYIRDSSTNAAKISKVYWM 280 (902)
T ss_dssp SCTTSCCTTCCCCCSSCCCEEEEEEEE
T ss_pred cccCCCCCcCCCCCccccCCeeEEEEE
Confidence 23479999995
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=203.72 Aligned_cols=188 Identities=20% Similarity=0.255 Sum_probs=158.2
Q ss_pred cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCC--CCCceeee-cCCCCEEEEEEec
Q psy11036 18 EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTR--SPDPVMSV-NHGSPVESVLCLP 94 (239)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~~~~-~~~~~v~~~~~~~ 94 (239)
|+++..+.+|. +.|++++|+| ++++|++|+.||.|++||+. +++....+ .|...|.+++|+|
T Consensus 1 G~~~~~~~~h~--------------~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~ 65 (379)
T 3jrp_A 1 GSMVVIANAHN--------------ELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65 (379)
T ss_dssp ----CCEEECC--------------CCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC
T ss_pred CCccEEecCCc--------------ccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC
Confidence 35567788888 9999999999 89999999999999999997 44555556 6899999999997
Q ss_pred C--CcEEEEeC-CCcEEEEEccCCCe--EEEEEeccCCceEEEEEcCC--CCEEEEEecCCeEEEEEcccceEeeeecce
Q psy11036 95 S--GGIFVTGG-GLDVCIWDMLGGGK--LLHKFTCHHKTVTSLCLASG--GKRLISASLDHHAKIYEMTLKTVSSFTGGL 167 (239)
Q Consensus 95 ~--~~~l~~~~-~~~i~~~d~~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 167 (239)
+ +.++++++ |+.|++||++ .++ ....+..|...|.+++|+|+ +.+|++++.|+.|++||++.
T Consensus 66 ~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~---------- 134 (379)
T 3jrp_A 66 PKFGTILASCSYDGKVLIWKEE-NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE---------- 134 (379)
T ss_dssp GGGCSEEEEEETTSCEEEEEEE-TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT----------
T ss_pred CCCCCEEEEeccCCEEEEEEcC-CCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC----------
Confidence 6 89999988 8999999998 565 67778889999999999999 99999999999999999981
Q ss_pred eEEEEEccCCCEEEEEEecccCcEEEEEEcc-------------CCCeEEEEcCCceEEEEEccCCe----eeEEec-CC
Q psy11036 168 DVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-------------GGKRLISASLDHHAKIYEMVNFS----PVHTLD-YP 229 (239)
Q Consensus 168 ~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-------------~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~-~~ 229 (239)
........+..|...|.+++|+| ++.+|++++.||.|++||+++++ .+..+. |.
T Consensus 135 --------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~ 206 (379)
T 3jrp_A 135 --------NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 206 (379)
T ss_dssp --------TSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred --------CCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc
Confidence 11233445678999999999999 69999999999999999998764 344555 78
Q ss_pred CCeeeeEecC
Q psy11036 230 SPVLSIDVSM 239 (239)
Q Consensus 230 ~~v~~~~~sp 239 (239)
.+|.+++|+|
T Consensus 207 ~~v~~~~~sp 216 (379)
T 3jrp_A 207 DWVRDVAWSP 216 (379)
T ss_dssp SCEEEEEECC
T ss_pred CcEeEEEECC
Confidence 8999999997
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-32 Score=211.54 Aligned_cols=218 Identities=11% Similarity=0.054 Sum_probs=152.9
Q ss_pred CCCCCEEEEeeCCCccee-----eeeeCCceeeccceeeccCCCCCeEEEEEec-------CCCCEEEEeeCCCeEEEEe
Q psy11036 4 DLPILIVALWDIPSEAQV-----STFTNHTTIYKVPLMLYSTPQDYVRAGTVSP-------VSSDIVISGSYDKTVNVYD 71 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~l~s~~~dg~v~vw~ 71 (239)
.+.|++|+|||+++++.. ..+.+|. +.|.+++|+| .++++|++|+.|++|++||
T Consensus 107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~--------------~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 107 VCQDNTVRLIITKNETIITQHVLGGKSGHH--------------NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECTTTSCS--------------SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred EeCCCcEEEEECCCCccceeeeecccCCCC--------------CceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 356899999999887543 3467888 9999999987 2578999999999999999
Q ss_pred CCCCCceeee-cCCCCEEEEEEecCCc-EEEEeC-CCcEEEEEccCCCeEEEE-------------------------Ee
Q psy11036 72 TRSPDPVMSV-NHGSPVESVLCLPSGG-IFVTGG-GLDVCIWDMLGGGKLLHK-------------------------FT 123 (239)
Q Consensus 72 ~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------------~~ 123 (239)
++++.+...+ .|..++.+++|+|++. ++++++ |+.|++||++ .++.... ..
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~-t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWT-LNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETT-CCC----------CSCCCSEEEESGGGC------
T ss_pred CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECC-CCcccccccccCCcccceEEecccccceeeeecc
Confidence 9887766555 7899999999999875 677777 8999999998 3332211 23
Q ss_pred ccCCceEEEEEc-CCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc--C
Q psy11036 124 CHHKTVTSLCLA-SGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS--G 199 (239)
Q Consensus 124 ~~~~~i~~i~~~-~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~--~ 199 (239)
+|...+.++.|+ |+++.+++++.|+.+++||+. ++....+.+. ...++.... .........+...+ ...++| +
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~-~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 328 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS-TMKLGPKNL-LPNVQGISLFPSLL-GACPHPRYM 328 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CC-SCSEEEECSSCCSS-CCEECSSCT
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee-cCccccEEE-ccccccccccCcce-eEEEccCCC
Confidence 577788999986 799999999999999999998 4433333211 111121111 11112222233333 334444 4
Q ss_pred CCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 200 GKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 200 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
+.++++|+.||.|++||+.+++++..+. +..+|.+++|||
T Consensus 329 ~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp 369 (393)
T 4gq1_A 329 DYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ 369 (393)
T ss_dssp TEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC
Confidence 5567888999999999999998877665 888999999998
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-31 Score=208.73 Aligned_cols=193 Identities=13% Similarity=0.244 Sum_probs=159.9
Q ss_pred EeeCCCcceeeee-eCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC---CC---ceeeecCC
Q psy11036 12 LWDIPSEAQVSTF-TNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS---PD---PVMSVNHG 84 (239)
Q Consensus 12 vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~---~~---~~~~~~~~ 84 (239)
.|+ .+++.+..+ .+|. +.|++++|+|.++++|++|+.||+|++||+.+ +. ....+.|.
T Consensus 47 ~w~-~~g~~~~~~~~~h~--------------~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~ 111 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEP--------------NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCS 111 (437)
T ss_dssp GGG-CCCCEEEEECTTTT--------------SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECS
T ss_pred ccc-ccceEEeeeccCCC--------------CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCC
Confidence 587 467888888 8888 99999999995578999999999999999876 43 34445789
Q ss_pred CCEEEEEEecCCcEEEEeC-CCcEEEEEcc--CCCeEEEEEec------------cCCceEEEE--EcCCCCEEEEEecC
Q psy11036 85 SPVESVLCLPSGGIFVTGG-GLDVCIWDML--GGGKLLHKFTC------------HHKTVTSLC--LASGGKRLISASLD 147 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~--~~~~~~~~~~~------------~~~~i~~i~--~~~~~~~l~~~~~d 147 (239)
..|.+++|+|++.++++++ |+.|++||++ ..++....+.. +...+.++. +++++.+|++++.|
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 191 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL 191 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence 9999999999999999988 8999999994 13333333221 445666666 56789999999999
Q ss_pred CeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec--ccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEE
Q psy11036 148 HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHT 225 (239)
Q Consensus 148 ~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 225 (239)
+.|++||++ ..+++..+.. |...|.+++|+|++++|++|+.||.|++||+++++++..
T Consensus 192 ~~i~iwd~~--------------------~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 251 (437)
T 3gre_A 192 SRVIIFDIR--------------------TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRS 251 (437)
T ss_dssp SEEEEEETT--------------------TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CeEEEEeCC--------------------CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEE
Confidence 999999998 4566666677 889999999999999999999999999999999999998
Q ss_pred ec--CCCCeeeeEecC
Q psy11036 226 LD--YPSPVLSIDVSM 239 (239)
Q Consensus 226 ~~--~~~~v~~~~~sp 239 (239)
+. +..+|.+++|+|
T Consensus 252 ~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 252 WSFGDHAPITHVEVCQ 267 (437)
T ss_dssp EBCTTCEEEEEEEECT
T ss_pred EecCCCCceEEEEecc
Confidence 74 667899997765
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-32 Score=206.30 Aligned_cols=179 Identities=20% Similarity=0.253 Sum_probs=149.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc--eeee-cCCCCEEEEEEec--CCcEEEEeC-CCcEEEEEccCCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP--VMSV-NHGSPVESVLCLP--SGGIFVTGG-GLDVCIWDMLGGG 116 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~--~~~~-~~~~~v~~~~~~~--~~~~l~~~~-~~~i~~~d~~~~~ 116 (239)
+.|++++|+| ++++|++|+.|++|++||+.+++. +..+ +|..+|.+++|+| ++.+|++++ |+.|++||++...
T Consensus 14 ~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~ 92 (316)
T 3bg1_A 14 DMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT 92 (316)
T ss_dssp CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC
T ss_pred CeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc
Confidence 9999999999 899999999999999999987653 4455 6999999999986 478888888 8999999998322
Q ss_pred -eEEEEEeccCCceEEEEEcCC--CCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEE
Q psy11036 117 -KLLHKFTCHHKTVTSLCLASG--GKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTS 193 (239)
Q Consensus 117 -~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~ 193 (239)
+....+.+|...|.+++|+|+ +.+|++++.|+.|++||++... .......+.+|...|.+
T Consensus 93 ~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-----------------~~~~~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 93 WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-----------------QWEVKKINNAHTIGCNA 155 (316)
T ss_dssp CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-----------------CEEECCBTTSSSSCBCC
T ss_pred ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-----------------CcceeeeeccccCCcce
Confidence 466778899999999999997 7899999999999999987110 01112334678889999
Q ss_pred EEEccC-----------------CCeEEEEcCCceEEEEEccCC---eeeEEec-CCCCeeeeEecC
Q psy11036 194 LCLASG-----------------GKRLISASLDHHAKIYEMVNF---SPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 194 ~~~s~~-----------------~~~l~s~s~d~~i~iwd~~~~---~~~~~~~-~~~~v~~~~~sp 239 (239)
++|+|+ +++|++|+.|+.|++||++.. +++..+. |...|.+++|+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp 222 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP 222 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC
Confidence 999997 478999999999999999765 4566666 888999999987
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-29 Score=192.75 Aligned_cols=199 Identities=22% Similarity=0.243 Sum_probs=170.3
Q ss_pred cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCC
Q psy11036 18 EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSG 96 (239)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~ 96 (239)
.+...++.+|. +.|++++| | ++++|++++.||.|++||+.+++....+ .|...|.+++|+|++
T Consensus 8 ~~~~~~l~~h~--------------~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 71 (313)
T 3odt_A 8 YQLSATLKGHD--------------QDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK 71 (313)
T ss_dssp CEEEEEECCCS--------------SCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTT
T ss_pred HHHHHHhhCCC--------------CCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCC
Confidence 36778889998 99999999 7 7889999999999999999888777766 689999999999999
Q ss_pred cEEEEeC-CCcEEEEEccCC--CeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeee----------
Q psy11036 97 GIFVTGG-GLDVCIWDMLGG--GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSF---------- 163 (239)
Q Consensus 97 ~~l~~~~-~~~i~~~d~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---------- 163 (239)
.++++++ ++.+++|++... .+....+..|...|.+++| +++.+++++.|+.|++||.. +.+..+
T Consensus 72 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~v~~~ 148 (313)
T 3odt_A 72 ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG-SLVYNLQAHNASVWDA 148 (313)
T ss_dssp TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-EEEEEEECCSSCEEEE
T ss_pred CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC-cEEEecccCCCceeEE
Confidence 9999998 899999998743 3567788899999999999 57899999999999999943 211111
Q ss_pred -------------ecceeEEEEEccCCCEEEEEEec-ccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-C
Q psy11036 164 -------------TGGLDVCIWDMLGGGKLLHKFTC-HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-Y 228 (239)
Q Consensus 164 -------------~~~~~i~~~d~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~ 228 (239)
..++.+++|| ..+....+.. |...|.+++|+|++. +++++.||.|++||+++++++..+. +
T Consensus 149 ~~~~~~~~~l~~~~~d~~i~i~d---~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~ 224 (313)
T 3odt_A 149 KVVSFSENKFLTASADKTIKLWQ---NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH 224 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEE---TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEccCCCCEEEEEECCCCEEEEe---cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence 2345699999 3566677777 899999999999998 9999999999999999999999998 8
Q ss_pred CCCeeeeEecC
Q psy11036 229 PSPVLSIDVSM 239 (239)
Q Consensus 229 ~~~v~~~~~sp 239 (239)
..+|.+++|+|
T Consensus 225 ~~~i~~~~~~~ 235 (313)
T 3odt_A 225 ESFVYCIKLLP 235 (313)
T ss_dssp SSCEEEEEECT
T ss_pred CceEEEEEEec
Confidence 88999999987
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-30 Score=230.30 Aligned_cols=218 Identities=20% Similarity=0.252 Sum_probs=189.0
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee---
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--- 81 (239)
+.||.|++||+++++.+..+.+|. +.|++++|+| +++++++++.||.|++||+.+++....+
T Consensus 720 ~~d~~v~vwd~~~~~~~~~~~~h~--------------~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 784 (1249)
T 3sfz_A 720 SNDFFLKLWDLNQKECRNTMFGHT--------------NSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVK 784 (1249)
T ss_dssp ETTSCEEEEETTSSSEEEEECCCS--------------SCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECC
T ss_pred eCCCeEEEEECCCcchhheecCCC--------------CCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceeccc
Confidence 568999999999999999999999 9999999999 8999999999999999998765432211
Q ss_pred -----------------------------------------------------cCCCCEEEEEEecCCcEEEEeC-CCcE
Q psy11036 82 -----------------------------------------------------NHGSPVESVLCLPSGGIFVTGG-GLDV 107 (239)
Q Consensus 82 -----------------------------------------------------~~~~~v~~~~~~~~~~~l~~~~-~~~i 107 (239)
.|...+.+++|+|++..+++++ ++.|
T Consensus 785 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v 864 (1249)
T 3sfz_A 785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCV 864 (1249)
T ss_dssp CCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCE
T ss_pred ccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeE
Confidence 3567888999999999999998 7999
Q ss_pred EEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccc-----------------------------
Q psy11036 108 CIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLK----------------------------- 158 (239)
Q Consensus 108 ~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~----------------------------- 158 (239)
++||+. .+..+..+.+|...|.+++|+|+++.+++++.|+.|++|++...
T Consensus 865 ~vwd~~-~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1249)
T 3sfz_A 865 ELWNID-SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNI 943 (1249)
T ss_dssp EEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESS
T ss_pred EEEEcC-CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCC
Confidence 999999 78889999999999999999999999999999999999996510
Q ss_pred -------------------------------eEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEc
Q psy11036 159 -------------------------------TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS 207 (239)
Q Consensus 159 -------------------------------~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 207 (239)
.+.....++.+.+||+.+ ++....+.+|...|.+++|+|++++|++++
T Consensus 944 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1022 (1249)
T 3sfz_A 944 RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRHIQFTADGKTLISSS 1022 (1249)
T ss_dssp SSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-TSCEEECCCCSSCCCCEEECSSSSCEEEEC
T ss_pred cceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC-CceeeecccCCCceEEEEECCCCCEEEEEc
Confidence 001112345689999886 566777889999999999999999999999
Q ss_pred CCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 208 LDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 208 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.||.|++||+.+++......+...+.+++|+|
T Consensus 1023 ~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~ 1054 (1249)
T 3sfz_A 1023 EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQ 1054 (1249)
T ss_dssp SSSBEEEEETTTTEEECCBCCSSCEEEEEECS
T ss_pred CCCEEEEEECCCCceEEEecCCCcEEEEEEcC
Confidence 99999999999999887777889999999976
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-30 Score=195.76 Aligned_cols=176 Identities=6% Similarity=-0.008 Sum_probs=141.1
Q ss_pred CCCCEEEEeeC-CCcceeeeeeCCceeeccceeeccCCCCCeEEEEEec--CCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 5 LPILIVALWDI-PSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSP--VSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 5 ~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
|.|+.|++|++ ++++.+..+.+|. ..++.++|++ .++.+|++++.|++|++||+++++++.++
T Consensus 154 g~d~~V~~~~~s~dG~~~~s~~~~~--------------~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL 219 (356)
T 2w18_A 154 LSDQQVEVMTFAEDGGGKENQFLMP--------------PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKM 219 (356)
T ss_dssp STTCEEEEEEECTTSCEEEEEEECC--------------CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCcEEEEEECCCCceeeeeccCC--------------CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEE
Confidence 46899999999 5588888888887 7788888887 25689999999999999999999999988
Q ss_pred c-C---CCCEEEEEEecCCcEEE------------EeC-CCcEEEEEccCCCeEEEEE-----eccCCceEEEEEcCCCC
Q psy11036 82 N-H---GSPVESVLCLPSGGIFV------------TGG-GLDVCIWDMLGGGKLLHKF-----TCHHKTVTSLCLASGGK 139 (239)
Q Consensus 82 ~-~---~~~v~~~~~~~~~~~l~------------~~~-~~~i~~~d~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~ 139 (239)
. + ...+.+++|+|+|.+++ +++ |++|++||.. +++.+..+ .+|...+.+..+ ++.
T Consensus 220 ~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~-tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~ 296 (356)
T 2w18_A 220 HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK-TTLSVGVMLYCLPPGQAGRFLEGDV--KDH 296 (356)
T ss_dssp ECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT-TTEEEEEEEECCCTTCCCCEEEEEE--ETT
T ss_pred cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC-CCEEEEEEEeeccCCCcceeEcccc--CCC
Confidence 3 3 34678889999999874 344 6899999998 77776655 256555544444 478
Q ss_pred EEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEE-EEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 140 RLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVT-SLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 140 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
.+++++.|++|+|||+. .++++..+.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 297 ~lASgS~DgTIkIWDl~--------------------tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 297 CAAAILTSGTIAIWDLL--------------------LGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEEETTSCEEEEETT--------------------TCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEEcCCCcEEEEECC--------------------CCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 89999999999999998 5667777788887655 5899999999999999999999996
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-30 Score=213.96 Aligned_cols=195 Identities=17% Similarity=0.184 Sum_probs=173.4
Q ss_pred CCEEEEeeCCCc----ceeeeeeCCceeeccceeeccCCCCC-eEEEEEecC-CCCEEEEeeCCCeEEEEeCCCC-----
Q psy11036 7 ILIVALWDIPSE----AQVSTFTNHTTIYKVPLMLYSTPQDY-VRAGTVSPV-SSDIVISGSYDKTVNVYDTRSP----- 75 (239)
Q Consensus 7 dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~-~~~~l~s~~~dg~v~vw~~~~~----- 75 (239)
++.|++||++++ +....+.+|. +. |++++|+|. ++++|++++.||.|++||+.++
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~--------------~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 103 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHG--------------SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS 103 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTT--------------TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE
T ss_pred CCeEEEEECCCCCCccccceEEecCC--------------CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccc
Confidence 689999999998 8899999998 99 999999993 4789999999999999999754
Q ss_pred ---Cceeee-cCCCCEEEEEEecCCcEEEEeC-C----CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCC-EEEEEe
Q psy11036 76 ---DPVMSV-NHGSPVESVLCLPSGGIFVTGG-G----LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISAS 145 (239)
Q Consensus 76 ---~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~ 145 (239)
+....+ .|..+|.+++|+|+++++++++ + +.|.+|| .++.+..+..|...|.+++|+|+++ .+++++
T Consensus 104 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 180 (615)
T 1pgu_A 104 VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD---SGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 180 (615)
T ss_dssp EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT---TCCEEEECCSCSSCEEEEEECSSSSCEEEEEE
T ss_pred ccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE---CCCcceeeecCCccEEEEEECCCCCcEEEEEe
Confidence 444455 5889999999999999999988 3 4677776 4567888899999999999999997 899999
Q ss_pred cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccC---cEEEEEEccC-CCeEEEEcCCceEEEEEccCCe
Q psy11036 146 LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHK---TVTSLCLASG-GKRLISASLDHHAKIYEMVNFS 221 (239)
Q Consensus 146 ~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~---~v~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~ 221 (239)
.|+.|++||++ ..+.+..+.+|.. .|.+++|+|+ +++|++++.||.|++||+.+++
T Consensus 181 ~d~~v~vwd~~--------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 181 DDGSVVFYQGP--------------------PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp TTTEEEEEETT--------------------TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred CCCcEEEEeCC--------------------CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 99999999987 5667777788998 9999999999 9999999999999999999999
Q ss_pred eeEEe-----cCCCCeeeeEec
Q psy11036 222 PVHTL-----DYPSPVLSIDVS 238 (239)
Q Consensus 222 ~~~~~-----~~~~~v~~~~~s 238 (239)
.+..+ .+..+|.+++|+
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~ 262 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL 262 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES
T ss_pred EeEEecccccccCCceEEEEEc
Confidence 99999 688899999985
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-30 Score=202.21 Aligned_cols=179 Identities=12% Similarity=0.160 Sum_probs=155.7
Q ss_pred CCCCEEEEeeCCCcceeeee--eCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc---ee
Q psy11036 5 LPILIVALWDIPSEAQVSTF--TNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP---VM 79 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~---~~ 79 (239)
+.||.|++||+++++....+ ..|. ..|.+++|+| ++++|++++.|+.|++||+..++. ..
T Consensus 71 ~~dg~i~vwd~~~~~~~~~~~~~~~~--------------~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 135 (372)
T 1k8k_C 71 GTDRNAYVWTLKGRTWKPTLVILRIN--------------RAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCK 135 (372)
T ss_dssp ETTSCEEEEEEETTEEEEEEECCCCS--------------SCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred cCCCeEEEEECCCCeeeeeEEeecCC--------------CceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeee
Confidence 46899999999888754443 5566 8999999999 789999999999999999988774 22
Q ss_pred ee--cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEcc-----------------CCCeEEEEEeccCCceEEEEEcCCCC
Q psy11036 80 SV--NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDML-----------------GGGKLLHKFTCHHKTVTSLCLASGGK 139 (239)
Q Consensus 80 ~~--~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~-----------------~~~~~~~~~~~~~~~i~~i~~~~~~~ 139 (239)
.+ .|...|.+++|+|++.++++++ |+.|++||++ ..++.+..+..|...|.+++|+|+++
T Consensus 136 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 215 (372)
T 1k8k_C 136 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 215 (372)
T ss_dssp EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC
Confidence 33 4789999999999999999988 8999999963 14678888889999999999999999
Q ss_pred EEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 140 RLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 140 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
+|++++.|+.|++||++ ..+++..+..|..+|.+++|+|++++|+++ .|+.|++|++.+
T Consensus 216 ~l~~~~~d~~i~i~d~~--------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADAD--------------------KKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEETTTEEEEEEGG--------------------GTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EEEEEeCCCEEEEEECC--------------------CCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999999999999998 355666778899999999999999988888 899999999988
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-29 Score=195.46 Aligned_cols=217 Identities=12% Similarity=0.195 Sum_probs=180.3
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEE-EEeeCCCeEEEEeCCCCCceeee
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIV-ISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
..+.|+.|++||+++++.+..+..| ..+.+++|+| +++++ ++++.|+.|++||+.+++....+
T Consensus 7 s~~~d~~v~v~d~~~~~~~~~~~~~---------------~~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~~~~ 70 (391)
T 1l0q_A 7 ANSESDNISVIDVTSNKVTATIPVG---------------SNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATV 70 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECS---------------SSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EcCCCCEEEEEECCCCeEEEEeecC---------------CCcceEEECC-CCCEEEEECCCCCeEEEEECCCCeEEEEE
Confidence 4578899999999999999999888 4589999999 66655 77779999999999999988888
Q ss_pred cCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEE-EEEecCCeEEEEEcc-c
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL-ISASLDHHAKIYEMT-L 157 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~i~d~~-~ 157 (239)
.+...+.+++|+|+++.+++++ ++.|++||+. .++.+..+.. ...+.+++|+|+++.+ ++++.|+.|++||++ +
T Consensus 71 ~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~-~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 148 (391)
T 1l0q_A 71 PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT-SNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK 148 (391)
T ss_dssp ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ECCCCccceEECCCCCEEEEEECCCCEEEEEECC-CCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 7667999999999999886554 5999999998 7777777764 4568999999999977 678889999999987 4
Q ss_pred ceEeee----------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEc---CCceE
Q psy11036 158 KTVSSF----------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS---LDHHA 212 (239)
Q Consensus 158 ~~~~~~----------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s---~d~~i 212 (239)
+.+..+ ..++.+.+||+++ .+....+. +...+.+++|+|++++|++++ .++.|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v 226 (391)
T 1l0q_A 149 AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTV 226 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred cEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcE
Confidence 433332 2245599999987 45555554 456899999999999998887 68999
Q ss_pred EEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 213 KIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
++||+.+++.+..+.....+.+++|+|
T Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~~s~ 253 (391)
T 1l0q_A 227 SMIDTGTNKITARIPVGPDPAGIAVTP 253 (391)
T ss_dssp EEEETTTTEEEEEEECCSSEEEEEECT
T ss_pred EEEECCCCeEEEEEecCCCccEEEEcc
Confidence 999999999999998777889999986
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=207.76 Aligned_cols=212 Identities=17% Similarity=0.295 Sum_probs=164.3
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce---ee
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV---MS 80 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~---~~ 80 (239)
.+.||.|++||+.+++.+..+..|. ..|.+++|++ +.+++|+.||.|++||+.+++.. ..
T Consensus 189 g~~dg~i~vwd~~~~~~~~~~~~h~--------------~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 251 (435)
T 1p22_A 189 GSSDSTVRVWDVNTGEMLNTLIHHC--------------EAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRV 251 (435)
T ss_dssp EETTSCEEEEESSSCCEEEEECCCC--------------SCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEE
T ss_pred EcCCCeEEEEECCCCcEEEEEcCCC--------------CcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeE
Confidence 3678999999999999999999998 9999999965 59999999999999999988765 33
Q ss_pred e-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-c
Q psy11036 81 V-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-L 157 (239)
Q Consensus 81 ~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~ 157 (239)
+ .|...|.++++ ++.++++++ |+.|++||++ .++.+..+.+|...|.++++ +++++++|+.||.|++||++ +
T Consensus 252 ~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 252 LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTS-TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred ecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC-cCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC
Confidence 3 68899999999 577888887 8999999999 78889999999999999999 46899999999999999998 6
Q ss_pred ceEeee--------------------ecceeEEEEEccCCCE--------EEEEEecccCcEEEEEEccCCCeEEEEcCC
Q psy11036 158 KTVSSF--------------------TGGLDVCIWDMLGGGK--------LLHKFTCHHKTVTSLCLASGGKRLISASLD 209 (239)
Q Consensus 158 ~~~~~~--------------------~~~~~i~~~d~~~~~~--------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d 209 (239)
+.+..+ ..++.|++||+.+... ++..+.+|...|.+++| ++++|++++.|
T Consensus 327 ~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~D 404 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD 404 (435)
T ss_dssp CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSS
T ss_pred CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCC
Confidence 665554 2345699999865321 77888999999999999 78899999999
Q ss_pred ceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 210 HHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 210 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
|.|++||+.+...........+..++.|.+
T Consensus 405 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 434 (435)
T 1p22_A 405 DTILIWDFLNDPAAQAEPPRSPSRTYTYIS 434 (435)
T ss_dssp SEEEEEC-----------------------
T ss_pred CEEEEEECCCCCCcccCCCCCCccceeeec
Confidence 999999999887777666666777776653
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=208.85 Aligned_cols=178 Identities=10% Similarity=0.047 Sum_probs=148.4
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC--Cceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCe-
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP--DPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGK- 117 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~- 117 (239)
++|++++|+| ++++|++|+.|+.|++||+.++ +....+ .|...|.+++|+|++++|++++ |+.|++||++ .++
T Consensus 12 ~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~-~~~~ 89 (377)
T 3dwl_C 12 KPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR-PDGT 89 (377)
T ss_dssp SCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------C
T ss_pred CcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC-CCCc
Confidence 7899999999 8999999999999999999987 566666 6899999999999999999988 8999999998 444
Q ss_pred --EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec-ccCcEEEE
Q psy11036 118 --LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC-HHKTVTSL 194 (239)
Q Consensus 118 --~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-h~~~v~~~ 194 (239)
....+..|...|.+++|+|++++|++++.|+.|++||++... .......+.. |...|.++
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------------~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN-----------------DWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC----------------------CCCCEEECSSCCSCEEEE
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc-----------------cceeeeEeecccCCCeEEE
Confidence 566778899999999999999999999999999999988110 0113445566 99999999
Q ss_pred EEccCCCeEEEEcCCceEEEEEcc------------------CCeeeEEecCCCCeeeeEecC
Q psy11036 195 CLASGGKRLISASLDHHAKIYEMV------------------NFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 195 ~~s~~~~~l~s~s~d~~i~iwd~~------------------~~~~~~~~~~~~~v~~~~~sp 239 (239)
+|+|++++|++++.|+.|++||+. .++++..+.+...|.+++|+|
T Consensus 153 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 215 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSP 215 (377)
T ss_dssp EECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECT
T ss_pred EEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECC
Confidence 999999999999999999999985 355666667888999999987
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=200.19 Aligned_cols=184 Identities=9% Similarity=0.083 Sum_probs=142.9
Q ss_pred CCCCCEEEEeeCC---------Ccceeeeee-CCceeeccceeeccCCCCCeEEEEEecC-CCCEEEEeeCCCeEEEEeC
Q psy11036 4 DLPILIVALWDIP---------SEAQVSTFT-NHTTIYKVPLMLYSTPQDYVRAGTVSPV-SSDIVISGSYDKTVNVYDT 72 (239)
Q Consensus 4 ~~~dg~i~vwd~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~v~vw~~ 72 (239)
.+.|+.|++|+.. +++.+..+. .|. ++|.+++|+|. +++++++++.||+|++||+
T Consensus 91 ~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 91 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA--------------NEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156 (343)
T ss_dssp ECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS--------------SCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred ecCCCeEEEEEccCceEEeecCCcceeEEeecCCC--------------CCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence 4678999999765 344344433 444 78999999992 3789999999999999999
Q ss_pred CCCCceeee--cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE-EEEec-cCCceEEEEEcCCCCEEEEEecC
Q psy11036 73 RSPDPVMSV--NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL-HKFTC-HHKTVTSLCLASGGKRLISASLD 147 (239)
Q Consensus 73 ~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~-~~~~~-~~~~i~~i~~~~~~~~l~~~~~d 147 (239)
++++..... .+...+.+++|+|++.++++|+ |+.|++||++ .++.. ..+.. |..+|++++|+|++.+|++++ |
T Consensus 157 ~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~ 234 (343)
T 3lrv_A 157 EDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS-SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D 234 (343)
T ss_dssp SSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS-CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S
T ss_pred CCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC-CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C
Confidence 999886655 3566899999999999999988 8999999999 55555 77787 999999999999999999999 5
Q ss_pred CeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcE--EEEEEccCCCeEEEEcC-CceEEEEEccCCe
Q psy11036 148 HHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTV--TSLCLASGGKRLISASL-DHHAKIYEMVNFS 221 (239)
Q Consensus 148 ~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v--~~~~~s~~~~~l~s~s~-d~~i~iwd~~~~~ 221 (239)
+.|++||++ .+.+..+ ..+..|...+ .+++|+|++++|++++. |+.|++|++.+..
T Consensus 235 ~~v~iwd~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 235 QTVVCFDLRKDVGTLAY------------------PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp SBEEEEETTSSTTCBSS------------------CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred CeEEEEEcCCCCcceee------------------cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 599999998 3332222 1111122333 46999999999999988 9999999986543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=208.22 Aligned_cols=171 Identities=12% Similarity=0.117 Sum_probs=140.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCC-----CEEEEEEecCCcEEEEeC-CCcEEEEEccCCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGS-----PVESVLCLPSGGIFVTGG-GLDVCIWDMLGGG 116 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~ 116 (239)
..|.+++|+| ++.+|++++.||+|++||... ....+.|.. .+.+++|+|+|++|++++ ||+|++||+. .+
T Consensus 86 ~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~-~~ 161 (588)
T 2j04_A 86 CYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR-KN 161 (588)
T ss_dssp CCEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC-CC
T ss_pred CcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC-CC
Confidence 8899999999 899999999999999999644 444445333 599999999999999999 7999999998 44
Q ss_pred e-------EEEEE----eccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEE-
Q psy11036 117 K-------LLHKF----TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKF- 184 (239)
Q Consensus 117 ~-------~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~- 184 (239)
. .+.++ .+|...|.+++|+|+| +++++.|+.|++||+.+... .+....+
T Consensus 162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~-----------------~~~~~tL~ 222 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH-----------------QPVSRMIQ 222 (588)
T ss_dssp TTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS-----------------CCCEEEEE
T ss_pred ccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc-----------------ccceeeec
Confidence 3 36676 5677899999999999 88999999999999881110 0123445
Q ss_pred ecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCee-eEEecCCCCeeeeEe--cC
Q psy11036 185 TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSP-VHTLDYPSPVLSIDV--SM 239 (239)
Q Consensus 185 ~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~--sp 239 (239)
.+|...|.+++|+ |+.||+++ ++.|++||+.+++. ...+.|.+.+.+++| +|
T Consensus 223 ~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~ 277 (588)
T 2j04_A 223 NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK 277 (588)
T ss_dssp CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS
T ss_pred ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC
Confidence 3788899999999 68999997 69999999999888 555578899999999 75
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=200.79 Aligned_cols=195 Identities=21% Similarity=0.318 Sum_probs=157.2
Q ss_pred CCCCCEEEEeeCCCcce-------eeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC-
Q psy11036 4 DLPILIVALWDIPSEAQ-------VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP- 75 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~- 75 (239)
.+.||.|++||+.++.. ...+..|. ..|.+++|+|.++.+|++++.||.|++||++++
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~--------------~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHT--------------AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCS--------------SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCC--------------CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 35689999999987322 34566777 899999999977889999999999999999987
Q ss_pred --Cceeee-cCCCCEEEEEEecCCc-EEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCC-EEEEEecCCe
Q psy11036 76 --DPVMSV-NHGSPVESVLCLPSGG-IFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISASLDHH 149 (239)
Q Consensus 76 --~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~ 149 (239)
+....+ .|...|++++|+|++. ++++++ |+.|++||++....++..+..|...|.+++|+|+++ +|++++.|+.
T Consensus 266 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~ 345 (430)
T 2xyi_A 266 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345 (430)
T ss_dssp SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC
T ss_pred CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc
Confidence 455555 6889999999999887 576777 799999999955778888999999999999999985 6999999999
Q ss_pred EEEEEccc-ceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC-eEEEEcCCceEEEEEccC
Q psy11036 150 AKIYEMTL-KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISASLDHHAKIYEMVN 219 (239)
Q Consensus 150 i~i~d~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~i~iwd~~~ 219 (239)
|++||+.. ......... .....+.+..+.+|...|.+++|+|+++ +|++++.||.|++|++..
T Consensus 346 i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDA-------EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CEEEEGGGTTCCCCHHHH-------HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEEEeCCCCccccCcccc-------ccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 99999981 110000000 0001255666788999999999999999 899999999999999864
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=202.53 Aligned_cols=201 Identities=17% Similarity=0.270 Sum_probs=167.6
Q ss_pred CCCCEEEEeeCCCc-------ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc
Q psy11036 5 LPILIVALWDIPSE-------AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP 77 (239)
Q Consensus 5 ~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~ 77 (239)
+.||.|++||+.++ +++..+.+|. ..|.+++|+|++.++|++++.|+.|++||+++++.
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~--------------~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 166 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHT--------------KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA 166 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCS--------------SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCC--------------CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc
Confidence 56899999999987 5677888898 99999999994347999999999999999999988
Q ss_pred eeee---cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEE-eccCCc-eEEEEEcCCCCEEEEE---ecCC
Q psy11036 78 VMSV---NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKF-TCHHKT-VTSLCLASGGKRLISA---SLDH 148 (239)
Q Consensus 78 ~~~~---~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~-~~~~~~-i~~i~~~~~~~~l~~~---~~d~ 148 (239)
+..+ .|...|.+++|+|++.++++++ |+.|++||++ .++.+..+ ..|.+. +.++.|+|++++|++| +.|+
T Consensus 167 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~ 245 (402)
T 2aq5_A 167 VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR-KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER 245 (402)
T ss_dssp EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT-TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC-CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence 8877 3889999999999999999988 8999999999 78888888 678776 8999999999999999 7999
Q ss_pred eEEEEEcc-cce---Eeee--------------------e--cceeEEEEEccCCCEEEEEEec--ccCcEEEEEEccCC
Q psy11036 149 HAKIYEMT-LKT---VSSF--------------------T--GGLDVCIWDMLGGGKLLHKFTC--HHKTVTSLCLASGG 200 (239)
Q Consensus 149 ~i~i~d~~-~~~---~~~~--------------------~--~~~~i~~~d~~~~~~~~~~~~~--h~~~v~~~~~s~~~ 200 (239)
.|++||++ .+. ...+ + +++.|++||+.+....+..+.. |...|.+++|+|++
T Consensus 246 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~ 325 (402)
T 2aq5_A 246 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKR 325 (402)
T ss_dssp EEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGG
T ss_pred eEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccc
Confidence 99999998 221 1111 2 2556999999876543444444 45899999999999
Q ss_pred CeEEEEcCCceEEEEEccCCee
Q psy11036 201 KRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 201 ~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
.++++ .++.+++|++.+++.
T Consensus 326 ~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 326 GLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp GSCGG--GTEEEEEEEEETTEE
T ss_pred cccee--cceeEEEEEcCCCcE
Confidence 98874 567999999988654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=195.65 Aligned_cols=206 Identities=13% Similarity=0.137 Sum_probs=153.4
Q ss_pred EeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEE
Q psy11036 12 LWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVL 91 (239)
Q Consensus 12 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~ 91 (239)
||++.+.+++.++..|. +.|.+++|+| ++++|++|+.++ +++|++.+++......+ ..+..++
T Consensus 3 i~s~~~~~~~~~~~~h~--------------~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~~~~~~-~~~~~~~ 65 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVS--------------NPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHIMSQEM-RHLSKVR 65 (355)
T ss_dssp ----------------C--------------CCCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEEEEEEC-SCCCEEE
T ss_pred cccccccCCccccccCC--------------CceEEEEECC-CCCEEEEEcCCE-EEEEecCCcceeeeeec-CCeEEEE
Confidence 56677777777778888 9999999999 889999988775 78999987765554433 2577888
Q ss_pred EecCCcEEEEe-C-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-c-ceEeee----
Q psy11036 92 CLPSGGIFVTG-G-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-L-KTVSSF---- 163 (239)
Q Consensus 92 ~~~~~~~l~~~-~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~---- 163 (239)
+.+++..++.. + ++.|++||+. .++.+..+. +..+|.+++++++. ++++ .|+.|++||+. . +.+..+
T Consensus 66 ~~~~~~~~~~~~~~d~~v~iWd~~-~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~ 140 (355)
T 3vu4_A 66 MLHRTNYVAFVTGVKEVVHIWDDV-KKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFG 140 (355)
T ss_dssp ECTTSSEEEEECSSTTEEEEEETT-TTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEE
T ss_pred EcCCCCEEEEEECCccEEEEEECC-CCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCC
Confidence 88888887544 4 6899999998 788888877 67799999998764 3433 58899999998 4 332221
Q ss_pred ---------------ecceeEEEEEccCCC--------------EE-EEEEecccCcEEEEEEccCCCeEEEEcCCce-E
Q psy11036 164 ---------------TGGLDVCIWDMLGGG--------------KL-LHKFTCHHKTVTSLCLASGGKRLISASLDHH-A 212 (239)
Q Consensus 164 ---------------~~~~~i~~~d~~~~~--------------~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~-i 212 (239)
..++.|++||+.+.. .+ +..+.+|...|.+++|+|+|++|++|+.|++ |
T Consensus 141 ~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v 220 (355)
T 3vu4_A 141 GVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII 220 (355)
T ss_dssp EEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred ceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence 234569999998743 12 6788999999999999999999999999998 9
Q ss_pred EEEEccCCeeeEEec---CCCCeeeeEecC
Q psy11036 213 KIYEMVNFSPVHTLD---YPSPVLSIDVSM 239 (239)
Q Consensus 213 ~iwd~~~~~~~~~~~---~~~~v~~~~~sp 239 (239)
++||+++++++..+. |..+|++++|+|
T Consensus 221 ~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~ 250 (355)
T 3vu4_A 221 RVFKTEDGVLVREFRRGLDRADVVDMKWST 250 (355)
T ss_dssp EEEETTTCCEEEEEECTTCCSCEEEEEECT
T ss_pred EEEECCCCcEEEEEEcCCCCCcEEEEEECC
Confidence 999999999999997 788999999997
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-29 Score=191.13 Aligned_cols=193 Identities=15% Similarity=0.152 Sum_probs=162.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC----ceeeecCCCCEEEEEEecCCc-EEEEeC-CCcEEEEEc-cCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD----PVMSVNHGSPVESVLCLPSGG-IFVTGG-GLDVCIWDM-LGG 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~~~i~~~d~-~~~ 115 (239)
+.|++++|+| ++++|++++.|+.|++|++.+++ ......|...|.+++|+|+++ ++++++ ++.|++||+ . .
T Consensus 12 ~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~ 89 (342)
T 1yfq_A 12 DYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG-S 89 (342)
T ss_dssp SCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS-S
T ss_pred CcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc-C
Confidence 9999999999 79999999999999999998887 444447999999999999999 888888 899999999 7 4
Q ss_pred CeEEEEEec--cCCceEEEEEcCCCCEEEEEecCCeEEEEEccc---------ce-Eee-------------------ee
Q psy11036 116 GKLLHKFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTL---------KT-VSS-------------------FT 164 (239)
Q Consensus 116 ~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~---------~~-~~~-------------------~~ 164 (239)
++ ...+.. |...|.+++|+| ++.+++++.|+.|++||++. .. +.. ..
T Consensus 90 ~~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 167 (342)
T 1yfq_A 90 PS-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM 167 (342)
T ss_dssp SS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEE
T ss_pred Cc-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEe
Confidence 43 367778 999999999999 99999999999999999873 21 111 13
Q ss_pred cceeEEEEEccC-CCE-EEEEEecccCcEEEEEEcc-CCCeEEEEcCCceEEEEEccCC------eeeEEec-CCC----
Q psy11036 165 GGLDVCIWDMLG-GGK-LLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMVNF------SPVHTLD-YPS---- 230 (239)
Q Consensus 165 ~~~~i~~~d~~~-~~~-~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~------~~~~~~~-~~~---- 230 (239)
.++.+++||+++ ... .......|...|.+++|+| ++++|++++.||.|++|++... +....+. +..
T Consensus 168 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
T 1yfq_A 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247 (342)
T ss_dssp STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC
T ss_pred CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccc
Confidence 355799999987 433 3344557888999999999 9999999999999999999877 7777776 433
Q ss_pred -----CeeeeEecC
Q psy11036 231 -----PVLSIDVSM 239 (239)
Q Consensus 231 -----~v~~~~~sp 239 (239)
+|.+++|+|
T Consensus 248 ~~~~~~i~~~~~s~ 261 (342)
T 1yfq_A 248 TNLAYPVNSIEFSP 261 (342)
T ss_dssp CSSCCCEEEEEECT
T ss_pred cccceeEEEEEEcC
Confidence 899999987
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-28 Score=192.90 Aligned_cols=216 Identities=17% Similarity=0.166 Sum_probs=179.5
Q ss_pred CCCCEEEEeeCCCcceee-----eeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee
Q psy11036 5 LPILIVALWDIPSEAQVS-----TFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM 79 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 79 (239)
+.++.|++||+.+++... .+.+|. ..|.+++|+| ++.++++++.|+.|++||+++++...
T Consensus 141 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~--------------~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~ 205 (433)
T 3bws_A 141 LEDEGMDVLDINSGQTVRLSPPEKYKKKL--------------GFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYKA 205 (433)
T ss_dssp TTSSSEEEEETTTCCEEEECCCHHHHTTC--------------CEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred CCCCeEEEEECCCCeEeeecCcccccccC--------------CceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEE
Confidence 457889999999998876 344565 8899999998 78999999999999999999998888
Q ss_pred ee-cCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEe--------cCC
Q psy11036 80 SV-NHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS--------LDH 148 (239)
Q Consensus 80 ~~-~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--------~d~ 148 (239)
.+ .+...+.+++|+|+++.+++++ ++.|++||++ .++.+..+.. ...+.+++|+|+++.+++++ .|+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg 283 (433)
T 3bws_A 206 TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK-TKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGG 283 (433)
T ss_dssp EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT-TTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCE
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC-CCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCC
Confidence 77 5788999999999999885444 7999999998 7777777664 45689999999999999888 488
Q ss_pred eEEEEEcc-cceEeee----------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEE
Q psy11036 149 HAKIYEMT-LKTVSSF----------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLIS 205 (239)
Q Consensus 149 ~i~i~d~~-~~~~~~~----------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 205 (239)
.|++||++ ++.+..+ ..++.+.+||+.+ .+....+. +...+.+++|+|++++|++
T Consensus 284 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~~ 361 (433)
T 3bws_A 284 RLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIP-VFDKPNTIALSPDGKYLYV 361 (433)
T ss_dssp EEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSSEEEEEECTTSSEEEE
T ss_pred eEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEec-CCCCCCeEEEcCCCCEEEE
Confidence 99999987 4332222 2345599999986 56666665 6778999999999998888
Q ss_pred EcC---------------CceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 206 ASL---------------DHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 206 ~s~---------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
++. ||.|++||+.+++.+..+.....+.+++|+|
T Consensus 362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~ 410 (433)
T 3bws_A 362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSP 410 (433)
T ss_dssp EECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECT
T ss_pred EecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcC
Confidence 776 5799999999999999998888899999987
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=196.52 Aligned_cols=197 Identities=17% Similarity=0.222 Sum_probs=157.1
Q ss_pred CCCCEEEEeeCCC-ccee-eeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec
Q psy11036 5 LPILIVALWDIPS-EAQV-STFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 82 (239)
+.||.|++||+++ ++.+ ..+.+|. ..|++++|+| ++++|++++.||.|++||+.+++......
T Consensus 61 ~~dg~i~iw~~~~~~~~~~~~~~~h~--------------~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 125 (368)
T 3mmy_A 61 SWANDVRCWEVQDSGQTIPKAQQMHT--------------GPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQIAQ 125 (368)
T ss_dssp ETTSEEEEEEECTTSCEEEEEEEECS--------------SCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCCCcEEEEEcCCCCceeEEEecccc--------------CCEEEEEECc-CCCEEEEEcCCCcEEEEEcCCCCceeecc
Confidence 4689999999987 5554 7788898 9999999999 89999999999999999999998887778
Q ss_pred CCCCEEEEEE--ecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccC---------------------------------
Q psy11036 83 HGSPVESVLC--LPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHH--------------------------------- 126 (239)
Q Consensus 83 ~~~~v~~~~~--~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~--------------------------------- 126 (239)
|...|.+++| +|++.++++++ |+.|++||++ .++.+..+..+.
T Consensus 126 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 204 (368)
T 3mmy_A 126 HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR-SSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEF 204 (368)
T ss_dssp CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS-CSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEE
T ss_pred ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC-CCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchh
Confidence 9999999999 88999898888 8999999998 555444444322
Q ss_pred --------CceEEEEEcCCCCE----EEEEecCCeEEEEEcc-cc-------------------------eEeee-----
Q psy11036 127 --------KTVTSLCLASGGKR----LISASLDHHAKIYEMT-LK-------------------------TVSSF----- 163 (239)
Q Consensus 127 --------~~i~~i~~~~~~~~----l~~~~~d~~i~i~d~~-~~-------------------------~~~~~----- 163 (239)
..+.++++.++... +++++.|+.|++||++ .. .+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 284 (368)
T 3mmy_A 205 RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV 284 (368)
T ss_dssp EECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTT
T ss_pred hhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecC
Confidence 23445555544433 8999999999999987 21 12221
Q ss_pred -------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 164 -------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 164 -------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
..++.|++||+.+ .+++..+.+|..+|.+++|+|++++|++++.|+..+.|++.
T Consensus 285 ~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 285 HGTLATVGSDGRFSFWDKDA-RTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp TCCEEEEETTSCEEEEETTT-TEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred CCEEEEEccCCeEEEEECCC-CcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 2345599999886 78888899999999999999999999999998866555543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-28 Score=189.24 Aligned_cols=177 Identities=13% Similarity=0.194 Sum_probs=142.5
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEE-EEeeCCCeEEEEeCCCCCceeeecCCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIV-ISGSYDKTVNVYDTRSPDPVMSVNHGS 85 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~~~~~~~~~~~ 85 (239)
+..+++||+++++....... ..+..+++.+ .++.+ ++++.|++|++||+.+++++..+.+..
T Consensus 39 ~~~~~iw~~~~~~~~~~~~~----------------~~~~~~~~~~-~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~ 101 (355)
T 3vu4_A 39 LKSFEIYNVHPVAHIMSQEM----------------RHLSKVRMLH-RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA 101 (355)
T ss_dssp SSEEEEEEETTEEEEEEEEC----------------SCCCEEEECT-TSSEEEEECSSTTEEEEEETTTTEEEEEEECSS
T ss_pred CCEEEEEecCCcceeeeeec----------------CCeEEEEEcC-CCCEEEEEECCccEEEEEECCCCcEEEEEECCC
Confidence 56689999988766544332 3466788888 55555 678888999999999999888888888
Q ss_pred CEEEEEEecCC-----------------------------------cEEEEe--C-CCcEEEEEccCCCe----------
Q psy11036 86 PVESVLCLPSG-----------------------------------GIFVTG--G-GLDVCIWDMLGGGK---------- 117 (239)
Q Consensus 86 ~v~~~~~~~~~-----------------------------------~~l~~~--~-~~~i~~~d~~~~~~---------- 117 (239)
+|.+++++++. ..++++ + +|.|++||++ .+.
T Consensus 102 ~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~-~~~~~~~~~~~~~ 180 (355)
T 3vu4_A 102 PVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQ-SSGSATTQDQGVQ 180 (355)
T ss_dssp CEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECC-C------------
T ss_pred ceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECC-CCCcccccccccc
Confidence 89988887643 233443 3 6889999987 322
Q ss_pred -----E-EEEEeccCCceEEEEEcCCCCEEEEEecCCe-EEEEEcccceEeeeecceeEEEEEccCCCEEEEEEe-c-cc
Q psy11036 118 -----L-LHKFTCHHKTVTSLCLASGGKRLISASLDHH-AKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFT-C-HH 188 (239)
Q Consensus 118 -----~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~-h~ 188 (239)
+ +..+.+|..+|.+++|+|+|++|++++.|++ |++||++ .++++..+. + |.
T Consensus 181 ~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~--------------------~~~~~~~~~~g~h~ 240 (355)
T 3vu4_A 181 QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE--------------------DGVLVREFRRGLDR 240 (355)
T ss_dssp ------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT--------------------TCCEEEEEECTTCC
T ss_pred ccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC--------------------CCcEEEEEEcCCCC
Confidence 2 6778899999999999999999999999998 9999998 456666666 5 99
Q ss_pred CcEEEEEEccCCCeEEEEcCCceEEEEEccCCe
Q psy11036 189 KTVTSLCLASGGKRLISASLDHHAKIYEMVNFS 221 (239)
Q Consensus 189 ~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~ 221 (239)
..|.+++|+|++++|++++.|+.|++||+..+.
T Consensus 241 ~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 241 ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp SCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 999999999999999999999999999997653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-29 Score=209.37 Aligned_cols=177 Identities=20% Similarity=0.255 Sum_probs=153.3
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC--CCceeee-cCCCCEEEEEEecC--CcEEEEeC-CCcEEEEEccCCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS--PDPVMSV-NHGSPVESVLCLPS--GGIFVTGG-GLDVCIWDMLGGG 116 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~--~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~-~~~i~~~d~~~~~ 116 (239)
+.|++++|+| ++++|++|+.||.|++||+.+ ++....+ .|..+|.+++|+|+ +.++++++ ||.|++||++ .+
T Consensus 10 ~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~-~~ 87 (753)
T 3jro_A 10 ELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE-NG 87 (753)
T ss_dssp CCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE-TT
T ss_pred ceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC-CC
Confidence 9999999999 789999999999999999984 4455556 69999999999987 89999988 8999999998 55
Q ss_pred e--EEEEEeccCCceEEEEEcCC--CCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEE
Q psy11036 117 K--LLHKFTCHHKTVTSLCLASG--GKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVT 192 (239)
Q Consensus 117 ~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~ 192 (239)
+ ....+..|...|.+++|+|+ ++.+++++.||.|++||++.. .......+.+|...|.
T Consensus 88 ~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~------------------~~~~~~~~~~~~~~v~ 149 (753)
T 3jro_A 88 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN------------------GTTSPIIIDAHAIGVN 149 (753)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS------------------SCCCCEEEECCSSCEE
T ss_pred cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC------------------CCcceeEeecCCCceE
Confidence 5 67778889999999999999 999999999999999999811 1223345678999999
Q ss_pred EEEEcc-------------CCCeEEEEcCCceEEEEEccCC----eeeEEec-CCCCeeeeEecC
Q psy11036 193 SLCLAS-------------GGKRLISASLDHHAKIYEMVNF----SPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 193 ~~~~s~-------------~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~-~~~~v~~~~~sp 239 (239)
+++|+| ++.+|++|+.||.|++||++++ .+...+. |..+|.+++|+|
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 214 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc
Confidence 999999 5899999999999999999887 4555665 788999999997
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=196.43 Aligned_cols=181 Identities=12% Similarity=0.207 Sum_probs=143.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-----------ceeee-cCC------------CCEEEEEEecCC--
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD-----------PVMSV-NHG------------SPVESVLCLPSG-- 96 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-----------~~~~~-~~~------------~~v~~~~~~~~~-- 96 (239)
+.|++++|+| ++++|++|+.||.|++||+.+++ ....+ .|. ..|.+++|+|++
T Consensus 29 ~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 29 DIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred CcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 8899999999 89999999999999999998776 34455 577 889999999997
Q ss_pred cEEEEeC-CCcEEEEEccCCCeE---------------------------------------EEE-EeccCCceEEEEEc
Q psy11036 97 GIFVTGG-GLDVCIWDMLGGGKL---------------------------------------LHK-FTCHHKTVTSLCLA 135 (239)
Q Consensus 97 ~~l~~~~-~~~i~~~d~~~~~~~---------------------------------------~~~-~~~~~~~i~~i~~~ 135 (239)
..+++++ |+.|++||+. .+.. ... ..+|...|.+++|+
T Consensus 108 ~~l~s~s~d~~i~iw~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKIS-ERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SEEEEEECSSCEEEEEEE-EEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred ceEEEeCCCCeEEEEecc-cccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 6777777 8999999987 3221 112 25799999999999
Q ss_pred CCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC-CeEEEEcCCceEE
Q psy11036 136 SGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG-KRLISASLDHHAK 213 (239)
Q Consensus 136 ~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~i~ 213 (239)
|++++|+++ .|+.|++||++ .... +.+.+... ..+.+|...|.+++|+|++ ++|++++.||.|+
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~--------~~~~~~~~-----~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRS--------FNIVDIKP-----ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR 252 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEE--------EEEEECCC-----SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCce--------eeeeeccc-----ccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence 999999998 89999999998 2111 11111110 0245789999999999998 9999999999999
Q ss_pred EEEccCCee----eEEec-CCC------------CeeeeEecC
Q psy11036 214 IYEMVNFSP----VHTLD-YPS------------PVLSIDVSM 239 (239)
Q Consensus 214 iwd~~~~~~----~~~~~-~~~------------~v~~~~~sp 239 (239)
+||+++++. +..+. +.. .|.+++|+|
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 295 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH 295 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC
Confidence 999999887 67777 443 899999987
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-26 Score=182.24 Aligned_cols=203 Identities=13% Similarity=0.196 Sum_probs=167.3
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEE-EEeeCCCeEEEEeCCCCCceeeecC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIV-ISGSYDKTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~~~~~~~~~ 83 (239)
+.++.|++||+.+++.+..+..+ ..+.+++|+| ++++| ++++.++.|++||+.+++.+..+.+
T Consensus 51 ~~d~~i~v~d~~~~~~~~~~~~~---------------~~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~ 114 (391)
T 1l0q_A 51 AHSNDVSIIDTATNNVIATVPAG---------------SSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKT 114 (391)
T ss_dssp GGGTEEEEEETTTTEEEEEEECS---------------SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCCCeEEEEECCCCeEEEEEECC---------------CCccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeC
Confidence 35799999999999998888776 6799999999 66665 5566779999999999988888877
Q ss_pred CCCEEEEEEecCCcEE-EEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEE-EEEecCCeEEEEEcc-cce
Q psy11036 84 GSPVESVLCLPSGGIF-VTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL-ISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l-~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~i~d~~-~~~ 159 (239)
...+.+++|+|+++.+ ++++ ++.|++||+. .++.+..+..+ ..+..++|+|+++.+ ++++.++.|++||++ .+.
T Consensus 115 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 192 (391)
T 1l0q_A 115 GKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192 (391)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE
Confidence 7789999999999977 5666 7999999998 77888777765 456999999999887 577789999999997 433
Q ss_pred Eeee---------------------e---cceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeE-EEEcCCceEEE
Q psy11036 160 VSSF---------------------T---GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL-ISASLDHHAKI 214 (239)
Q Consensus 160 ~~~~---------------------~---~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~d~~i~i 214 (239)
+..+ . .+..+.+||+.+ .+.+..+..|. .+.+++|+|++++| ++++.|+.|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v 270 (391)
T 1l0q_A 193 IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-NKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSV 270 (391)
T ss_dssp EEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT-TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC-CeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEE
Confidence 3222 1 356799999986 56777777755 47899999999877 67789999999
Q ss_pred EEccCCeeeEEec
Q psy11036 215 YEMVNFSPVHTLD 227 (239)
Q Consensus 215 wd~~~~~~~~~~~ 227 (239)
||+.+++.+..+.
T Consensus 271 ~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 271 IDTATNTITATMA 283 (391)
T ss_dssp EETTTTEEEEEEE
T ss_pred EECCCCcEEEEEE
Confidence 9999999988876
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=208.99 Aligned_cols=183 Identities=11% Similarity=0.102 Sum_probs=151.3
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHK 121 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~ 121 (239)
+.|++++|+| ++++|++|+.||+|++|+..+.+....+.|..+|.+++|+| +++|++++ |+.|++||++ .++.+..
T Consensus 18 ~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~-~~~~~~~ 94 (902)
T 2oaj_A 18 SKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY-SQKVLTT 94 (902)
T ss_dssp SCEEEEEEET-TTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETT-TCSEEEE
T ss_pred CCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC-CCcEEEE
Confidence 8999999999 89999999999999999998877766667889999999999 88888887 8999999998 6777777
Q ss_pred EeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC-C
Q psy11036 122 FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG-G 200 (239)
Q Consensus 122 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~-~ 200 (239)
+. |...|++++|+|++++|++|+.||.|++||++...+..+.-. .+|.. ...+.+|.++|.+++|+|+ +
T Consensus 95 ~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~---~~~~~------~~~~~~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 95 VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLD---NLQKS------SFFPAARLSPIVSIQWNPRDI 164 (902)
T ss_dssp EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEEC---CHHHH------HTCSSSCCCCCCEEEEETTEE
T ss_pred Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceec---ccccc------ccccccCCCCeEEEEEccCCC
Confidence 76 778999999999999999999999999999982221111000 00000 0123578899999999996 5
Q ss_pred CeEEEEcCCceEEEEEccCCeeeEEecCC-------------------CCeeeeEecC
Q psy11036 201 KRLISASLDHHAKIYEMVNFSPVHTLDYP-------------------SPVLSIDVSM 239 (239)
Q Consensus 201 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-------------------~~v~~~~~sp 239 (239)
..|++|+.||.| +||+++++++..+... ..|++++|+|
T Consensus 165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 789999999999 9999999999888733 6799999997
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=193.85 Aligned_cols=180 Identities=8% Similarity=0.038 Sum_probs=141.3
Q ss_pred CCCCCC-------CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCC
Q psy11036 1 MSHDLP-------ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTR 73 (239)
Q Consensus 1 fs~~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 73 (239)
|||+|. ||.|++||.++ ++..+. |.. .-....|.+++|+| ++++|++|+.||+|++||+.
T Consensus 93 wSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~---------~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 93 PSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG---------NLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp ECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS---------CSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC---------ccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECC
Confidence 566664 79999999644 666666 640 00012599999999 89999999999999999999
Q ss_pred CCCc-------eeee-----cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCe--EEEEE-eccCCceEEEEEcCCC
Q psy11036 74 SPDP-------VMSV-----NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGK--LLHKF-TCHHKTVTSLCLASGG 138 (239)
Q Consensus 74 ~~~~-------~~~~-----~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~--~~~~~-~~~~~~i~~i~~~~~~ 138 (239)
++.. +.++ +|...|.+++|+|+| +++++.|+.+++||+..... ..+++ .+|...|.+++|+ |
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g 236 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D 236 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C
Confidence 8753 3443 366799999999999 55555599999999983332 34566 4788999999999 6
Q ss_pred CEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEE--ccCCCeEEEEcCCceEEEEE
Q psy11036 139 KRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL--ASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 139 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~s~d~~i~iwd 216 (239)
+.|++++ ++.|++||+. +.+......+|...|..++| +|++..|++++.||+ ++|.
T Consensus 237 ~~LASa~-~~tIkLWd~~--------------------~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 237 YKVVLTC-PGYVHKIDLK--------------------NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp TEEEEEC-SSEEEEEETT--------------------TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred CEEEEEe-CCeEEEEECC--------------------CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 8888887 7999999988 34442333379999999999 999999999999999 9998
Q ss_pred cc
Q psy11036 217 MV 218 (239)
Q Consensus 217 ~~ 218 (239)
..
T Consensus 295 ~d 296 (588)
T 2j04_A 295 ED 296 (588)
T ss_dssp SS
T ss_pred ec
Confidence 63
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=178.49 Aligned_cols=209 Identities=11% Similarity=0.061 Sum_probs=145.9
Q ss_pred CCEEEEeeCCCc---ceeeeeeCCce-eeccce----------eeccCCCCCeEEEEEecCC----CCEEEEeeC-----
Q psy11036 7 ILIVALWDIPSE---AQVSTFTNHTT-IYKVPL----------MLYSTPQDYVRAGTVSPVS----SDIVISGSY----- 63 (239)
Q Consensus 7 dg~i~vwd~~~~---~~~~~~~~~~~-~~~~~~----------~~~~~~~~~v~~~~~~~~~----~~~l~s~~~----- 63 (239)
+..|++|+..++ +.++++..|+. .+.+-+ .........|.+++++| + ++.+++++.
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp-d~~~~~~~l~s~g~~~~v~ 140 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS-DDESEKQVLLKSGNIKAVL 140 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-------CCEEEEEEEEEEEEE
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC-CccccccEEEeCCCeEEEE
Confidence 578999999988 78888888872 111100 01112224678888888 6 666666543
Q ss_pred ---------------CCeEEEEeC-CCCCceeee-cCCCCEEEEEEec---CCcEEEEeC-CCcEEEEEccCCCeEEEEE
Q psy11036 64 ---------------DKTVNVYDT-RSPDPVMSV-NHGSPVESVLCLP---SGGIFVTGG-GLDVCIWDMLGGGKLLHKF 122 (239)
Q Consensus 64 ---------------dg~v~vw~~-~~~~~~~~~-~~~~~v~~~~~~~---~~~~l~~~~-~~~i~~~d~~~~~~~~~~~ 122 (239)
|+.|++|++ .+++.+..+ .|...+..++|+| ++..|++++ |++|++||++ +++.++++
T Consensus 141 ~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~-TGk~l~tL 219 (356)
T 2w18_A 141 GLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK-TGQLLKKM 219 (356)
T ss_dssp EETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT-TCCEEEEE
T ss_pred ecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC-CCcEEEEE
Confidence 888888888 446665555 5777888888888 678999988 8999999999 88899999
Q ss_pred eccCC---ceEEEEEcCCCCEEE------------EEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEE---
Q psy11036 123 TCHHK---TVTSLCLASGGKRLI------------SASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKF--- 184 (239)
Q Consensus 123 ~~~~~---~i~~i~~~~~~~~l~------------~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--- 184 (239)
.+|.. .+.+++|+|+|.+++ +|+.|++|++||.. + ++.+..+
T Consensus 220 ~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~-------------------t-gk~l~v~~~~ 279 (356)
T 2w18_A 220 HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK-------------------T-TLSVGVMLYC 279 (356)
T ss_dssp ECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT-------------------T-TEEEEEEEEC
T ss_pred cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC-------------------C-CEEEEEEEee
Confidence 86543 677889999998874 45566666666665 2 3333332
Q ss_pred --ecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCee-eeEecC
Q psy11036 185 --TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVL-SIDVSM 239 (239)
Q Consensus 185 --~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~-~~~~sp 239 (239)
.+|...+.+..+ ++.++++++.|++|+|||+.+++.+.++. |...+. +++|||
T Consensus 280 ~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 280 LPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp CCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred ccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence 355555444444 48899999999999999999999999998 555554 589998
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-26 Score=179.69 Aligned_cols=210 Identities=11% Similarity=0.030 Sum_probs=165.0
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCC---eEEEEeCCCCCceeeecCC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDK---TVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~v~vw~~~~~~~~~~~~~~ 84 (239)
+.|++||++ +.....+..|. ..+.+++|+| +++.|++++.++ .|++||+.+++......+.
T Consensus 159 ~~i~i~d~~-g~~~~~l~~~~--------------~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~ 222 (415)
T 2hqs_A 159 YELRVSDYD-GYNQFVVHRSP--------------QPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFP 222 (415)
T ss_dssp EEEEEEETT-SCSCEEEEEES--------------SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS
T ss_pred ceEEEEcCC-CCCCEEEeCCC--------------CcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC
Confidence 799999997 45567777887 8999999999 889999998875 9999999999876555788
Q ss_pred CCEEEEEEecCCcEEE-EeC-CC--cEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec-CC--eEEEEEccc
Q psy11036 85 SPVESVLCLPSGGIFV-TGG-GL--DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL-DH--HAKIYEMTL 157 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~-~~~-~~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~i~d~~~ 157 (239)
..+.+++|+|+|+.|+ +++ ++ .|.+||+. .++. ..+..|...+.+++|+|+|++|++++. ++ .|.+||+..
T Consensus 223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~-~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~ 300 (415)
T 2hqs_A 223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING 300 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-TCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred CcccCEEEcCCCCEEEEEEecCCCceEEEEECC-CCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence 8999999999999888 444 44 49999997 4443 567778889999999999999998876 45 677778762
Q ss_pred ceEeee-------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc--
Q psy11036 158 KTVSSF-------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH-- 210 (239)
Q Consensus 158 ~~~~~~-------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~-- 210 (239)
.....+ .+...+.+||+.+... ..+..+. .+.+++|+|+|++|++++.++
T Consensus 301 ~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~ 377 (415)
T 2hqs_A 301 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGTMVIYSSSQGMG 377 (415)
T ss_dssp SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSSEEEEEEEETTE
T ss_pred CCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCCCEEEEEEcCCCc
Confidence 211111 1135689999886433 3344554 799999999999999888776
Q ss_pred -eEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 211 -HAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 211 -~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
.|++||+. ++.+..+. +.+.|.+++|+|
T Consensus 378 ~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 378 SVLNLVSTD-GRFKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp EEEEEEETT-SCCEEECCCSSSEEEEEEECC
T ss_pred cEEEEEECC-CCcEEEeeCCCCCCcCCcccc
Confidence 89999996 45556665 778999999998
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-25 Score=171.56 Aligned_cols=189 Identities=23% Similarity=0.278 Sum_probs=150.3
Q ss_pred eEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee---cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 45 VRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV---NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 45 v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
..+|+|++ + ++|++| .|++|++||+.+++.+..+ .|...|++++|+|+++++++|+ |+.|++||++ .++.+.
T Consensus 28 ~~~l~WS~-~-~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~-~~~~~~ 103 (318)
T 4ggc_A 28 LNLVDWSS-G-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-QQKRLR 103 (318)
T ss_dssp CBCEEECT-T-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEE
T ss_pred ceEEEECC-C-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC-CceeEE
Confidence 56799998 4 477665 5899999999999988766 4778899999999999999998 8999999999 889999
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc--cceEeee----------------------ecceeEEEEEccC
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT--LKTVSSF----------------------TGGLDVCIWDMLG 176 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~----------------------~~~~~i~~~d~~~ 176 (239)
.+.+|...+.++.+ ++..+++++.++.+++|+.. ...+..+ ..++.+++||+++
T Consensus 104 ~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 99999998877655 56799999999999999987 2332222 2345588888764
Q ss_pred CCE---E--------------------------------------------EEEEecccCcEEEEEEccCCCeEEEEc--
Q psy11036 177 GGK---L--------------------------------------------LHKFTCHHKTVTSLCLASGGKRLISAS-- 207 (239)
Q Consensus 177 ~~~---~--------------------------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s-- 207 (239)
... . ......+...+..+.|+|+++.+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~ 261 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 261 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEc
Confidence 210 0 001112445677888899888777654
Q ss_pred CCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 208 LDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 208 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
.|+.|++||+.+++++.++. |.++|++++|+|
T Consensus 262 ~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp 294 (318)
T 4ggc_A 262 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 294 (318)
T ss_dssp TTCCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 79999999999999999998 889999999997
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=188.01 Aligned_cols=178 Identities=8% Similarity=0.044 Sum_probs=127.0
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee--
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-- 81 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-- 81 (239)
.+.|++|+|||+.++.++..+..|. .+|.+++|+|+++++|++++.|++|++||+++++.....
T Consensus 162 ~s~D~tv~~Wd~~~~~~~~~~~~~~--------------~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 162 VGDDCTLIIWRLTDEGPILAGYPLS--------------SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp EETTSEEEEEEEETTEEEEEEEECS--------------SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-------
T ss_pred EECCCeEEEEECCCCceeeeecCCC--------------CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccc
Confidence 4679999999999888888888887 899999999955568999999999999999877543221
Q ss_pred ------------------------cCCCCEEEEEEe-cCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEE--
Q psy11036 82 ------------------------NHGSPVESVLCL-PSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLC-- 133 (239)
Q Consensus 82 ------------------------~~~~~v~~~~~~-~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~-- 133 (239)
.|...+.++.|+ |+++.+++++ |+.+++||+. .++....+..|...+..+.
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~-~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF-ANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCS
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc-cCCCCceEeeecCccccEEEc
Confidence 255678888887 7999999998 8999999997 5555555544444333333
Q ss_pred ----------------EcC--CCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEE
Q psy11036 134 ----------------LAS--GGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLC 195 (239)
Q Consensus 134 ----------------~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~ 195 (239)
++| ++.++++|+.||.|++||+. .++.......|..+|.+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~--------------------~~~~~~~~~~~~~~V~sva 366 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTY--------------------EKDSNSIPIQLGMPIVDFC 366 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETT--------------------CTTCCEEEEECSSCEEEEE
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECC--------------------CCcEEEEecCCCCcEEEEE
Confidence 333 33466778889999999987 3444555577889999999
Q ss_pred EccCCCeEEEEcCCceEEEEEc
Q psy11036 196 LASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 196 ~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
|+|||++||+++.+| +.+|++
T Consensus 367 fspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 367 WHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp ECTTSSEEEEEESSE-EEEEEE
T ss_pred EcCCCCEEEEEeCCC-eEEEEE
Confidence 999999999998776 555555
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-25 Score=176.96 Aligned_cols=212 Identities=12% Similarity=0.071 Sum_probs=171.0
Q ss_pred EEEEeeCCCc--ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-----
Q psy11036 9 IVALWDIPSE--AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV----- 81 (239)
Q Consensus 9 ~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~----- 81 (239)
.|+.+|..++ +.+..+..+ ..+.+++|+| ++.++++++.++.|++||+.+++.....
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~---------------~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~ 165 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTG---------------FQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKY 165 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECS---------------SCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHH
T ss_pred EEEEECCCCCcceEEEEEcCC---------------CCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccc
Confidence 5555565444 455556555 4466999999 8889999999999999999999877632
Q ss_pred -cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEE-EecCCeEEEEEcc-c
Q psy11036 82 -NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLIS-ASLDHHAKIYEMT-L 157 (239)
Q Consensus 82 -~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~~i~i~d~~-~ 157 (239)
.|...+.+++|+|++.++++++ ++.|++||++ .++.+..+..|...+.+++|+|+++.+++ ++.|+.|++||++ +
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLK-TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT-TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECC-CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 4778999999999999999988 7999999998 77888888889999999999999998855 4479999999987 4
Q ss_pred ceEeee---------------------e--------cceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCe-EEEEc
Q psy11036 158 KTVSSF---------------------T--------GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR-LISAS 207 (239)
Q Consensus 158 ~~~~~~---------------------~--------~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s 207 (239)
+.+..+ . +++.|++||+.+ ++....+ .|...+.+++|+|+++. +++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~ 322 (433)
T 3bws_A 245 LEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK-EKLIDTI-GPPGNKRHIVSGNTENKIYVSDM 322 (433)
T ss_dssp EEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT-TEEEEEE-EEEECEEEEEECSSTTEEEEEET
T ss_pred cEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC-CcEEeec-cCCCCcceEEECCCCCEEEEEec
Confidence 443332 1 245688999886 4444443 45568899999999975 46778
Q ss_pred CCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 208 LDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 208 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.|+.|++||+.+++.+..+.+...+.+++|+|
T Consensus 323 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~ 354 (433)
T 3bws_A 323 CCSKIEVYDLKEKKVQKSIPVFDKPNTIALSP 354 (433)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSEEEEEECT
T ss_pred CCCEEEEEECCCCcEEEEecCCCCCCeEEEcC
Confidence 99999999999999999999888999999987
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-24 Score=164.96 Aligned_cols=216 Identities=12% Similarity=0.093 Sum_probs=171.1
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCC--CeEEEEEecCCCC-EEEEeeCCCeEEEEeCCCCCcee
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQD--YVRAGTVSPVSSD-IVISGSYDKTVNVYDTRSPDPVM 79 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~~~~~~ 79 (239)
..+.++.|++||+.+++.+..+.... . .+..++|+| +++ +++++..++.|.+||+.+++.+.
T Consensus 6 ~~~~~~~v~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~ 70 (337)
T 1pby_B 6 APARPDKLVVIDTEKMAVDKVITIAD--------------AGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLG 70 (337)
T ss_dssp EEETTTEEEEEETTTTEEEEEEECTT--------------CTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EcCCCCeEEEEECCCCcEEEEEEcCC--------------CCCCccceEEcC-CCCEEEEEeCCCCeEEEEECCCCCeEe
Confidence 34678999999999999888876542 2 578999999 565 45666778999999999998877
Q ss_pred eecCCC------CEEEEEEecCCcEEEEe-------------CCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCE
Q psy11036 80 SVNHGS------PVESVLCLPSGGIFVTG-------------GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR 140 (239)
Q Consensus 80 ~~~~~~------~v~~~~~~~~~~~l~~~-------------~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 140 (239)
.+.... .+..++|+|+++.++++ .++.|.+||+. .++....+.. ...+..++|+|++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~~~~~~~-~~~~~~~~~s~dg~~ 148 (337)
T 1pby_B 71 RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSRRKAFEA-PRQITMLAWARDGSK 148 (337)
T ss_dssp EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEEEEEEEC-CSSCCCEEECTTSSC
T ss_pred eEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECC-CCcEEEEEeC-CCCcceeEECCCCCE
Confidence 664332 67789999999988887 35899999997 7777776664 456788999999998
Q ss_pred EEEEecCCeEEEEEcc-cceEeeeecce---------------------------------------------eEEEEEc
Q psy11036 141 LISASLDHHAKIYEMT-LKTVSSFTGGL---------------------------------------------DVCIWDM 174 (239)
Q Consensus 141 l~~~~~d~~i~i~d~~-~~~~~~~~~~~---------------------------------------------~i~~~d~ 174 (239)
++++ ++.|.+||+. ++....+.... .+.+||+
T Consensus 149 l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 149 LYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp EEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred EEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 8887 6899999998 55443331111 4689999
Q ss_pred cCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 175 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 175 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.+.......+..+...+..++|+|++++++++ ++.|++||+.+++.+..+.....+.+++|+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~ 289 (337)
T 1pby_B 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVST 289 (337)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECT
T ss_pred CCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECC
Confidence 87554444556667788899999999999888 7999999999999999888777888999986
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-25 Score=164.23 Aligned_cols=219 Identities=13% Similarity=0.095 Sum_probs=162.2
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC-CCceeee
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS-PDPVMSV 81 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~ 81 (239)
.++.++.|++||+.+++.. .+..|. ..|.+++|+| ++++|++++ ++.|++||+.+ ++.....
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~--------------~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~ 79 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTP--------------ELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVD 79 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEES--------------SCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECC
T ss_pred CCCcceeEEEEeCCCCcee-eeccCC--------------cceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEec
Confidence 3567899999999888765 444566 8899999999 788888876 78999999998 7766555
Q ss_pred c-C-CCCEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEE-EEecCCeEEEEEc
Q psy11036 82 N-H-GSPVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLI-SASLDHHAKIYEM 155 (239)
Q Consensus 82 ~-~-~~~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~i~d~ 155 (239)
. + ...+.+++|+|+++.++++. ++...+|.++........+..+ ..+..++|+|+++.|+ +++.++.+++|++
T Consensus 80 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~ 158 (297)
T 2ojh_A 80 TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSM 158 (297)
T ss_dssp CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEE
Confidence 3 3 46788999999999998887 2456666554233334444433 4588999999999877 7888999999996
Q ss_pred c--cceEeee----------------------e-cceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCC-
Q psy11036 156 T--LKTVSSF----------------------T-GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD- 209 (239)
Q Consensus 156 ~--~~~~~~~----------------------~-~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d- 209 (239)
+ ......+ . .+..+.+|++.........+..|...+..++|+|++++|++++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 238 (297)
T 2ojh_A 159 DIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDA 238 (297)
T ss_dssp ETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEET
T ss_pred ECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCC
Confidence 5 2222221 1 133466777664445556677778889999999999999888765
Q ss_pred ----------ceEEEEEccCCee--eEEe-cCCCCeeeeEecC
Q psy11036 210 ----------HHAKIYEMVNFSP--VHTL-DYPSPVLSIDVSM 239 (239)
Q Consensus 210 ----------~~i~iwd~~~~~~--~~~~-~~~~~v~~~~~sp 239 (239)
+.|++||+.+++. +..+ .+...+.+++|+|
T Consensus 239 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 281 (297)
T 2ojh_A 239 DVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP 281 (297)
T ss_dssp TCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT
T ss_pred CCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECC
Confidence 5799999988765 3333 3677899999987
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=172.12 Aligned_cols=174 Identities=13% Similarity=0.095 Sum_probs=137.1
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC----------------CceeeecCCCCEEEEEEecCCcEEE----Ee
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP----------------DPVMSVNHGSPVESVLCLPSGGIFV----TG 102 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~----~~ 102 (239)
..+..+++++ .+.++++++.|+ +++|+.... .....+.+...|.+++|+|++++|+ ++
T Consensus 37 ~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 4588999999 788999998887 888875311 0112234667899999999999999 56
Q ss_pred C-CCcEEEEEccCC-----C--e---EEEEEeccCCceEEEEEcCC-CCEEEEEecCCeEEEEEcccceEeeeecceeEE
Q psy11036 103 G-GLDVCIWDMLGG-----G--K---LLHKFTCHHKTVTSLCLASG-GKRLISASLDHHAKIYEMTLKTVSSFTGGLDVC 170 (239)
Q Consensus 103 ~-~~~i~~~d~~~~-----~--~---~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~ 170 (239)
+ |+.|++||++.. . + .+..+.+|...|.+++|+|+ +.+|++++.||+|++||++
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~-------------- 180 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT-------------- 180 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES--------------
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC--------------
Confidence 6 799999998632 1 1 24556679999999999997 7899999999999999998
Q ss_pred EEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-C-------CCCeeeeEecC
Q psy11036 171 IWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-Y-------PSPVLSIDVSM 239 (239)
Q Consensus 171 ~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~-------~~~v~~~~~sp 239 (239)
.........+|...|.+++|+|+|++|++|+.||.|++||++ ++....+. + ...+.+++|+|
T Consensus 181 ------~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 181 ------ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp ------SSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred ------CCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec
Confidence 334444556788999999999999999999999999999998 66665554 2 12788888874
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-23 Score=166.70 Aligned_cols=217 Identities=14% Similarity=0.102 Sum_probs=172.9
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeC--CCCCceeee
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDT--RSPDPVMSV 81 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~--~~~~~~~~~ 81 (239)
.+.++.|.+||..+++.+.++..+. . +..++|+| ++++|++++.|++|++||+ .+++.+..+
T Consensus 155 ~~~d~~V~v~D~~t~~~~~~i~~g~--------------~-~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 155 LRDAGQIALVDGDSKKIVKVIDTGY--------------A-VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp EGGGTEEEEEETTTCCEEEEEECST--------------T-EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred EcCCCeEEEEECCCceEEEEEecCc--------------c-cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 3457999999999999999998664 4 88999999 8999999999999999999 788888888
Q ss_pred cCCCCEEEEEEec----CCcEEEEeC--CCcEEEEEccCCCeEEEEEecc----------CC-ceEEEEEcCCCC-EEEE
Q psy11036 82 NHGSPVESVLCLP----SGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCH----------HK-TVTSLCLASGGK-RLIS 143 (239)
Q Consensus 82 ~~~~~v~~~~~~~----~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~----------~~-~i~~i~~~~~~~-~l~~ 143 (239)
.+...+..++|+| +|+++++++ +++|.+||.. +.+.+..+..+ .. .+..+.++|++. ++++
T Consensus 219 ~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~-t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 219 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc-ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 7777889999999 999999988 6999999998 78888877642 22 688999999775 5566
Q ss_pred EecCCeEEEEEcc-cceEe--ee----------------------ecceeEEEEEccCCCEEEEEEec----ccCcEEEE
Q psy11036 144 ASLDHHAKIYEMT-LKTVS--SF----------------------TGGLDVCIWDMLGGGKLLHKFTC----HHKTVTSL 194 (239)
Q Consensus 144 ~~~d~~i~i~d~~-~~~~~--~~----------------------~~~~~i~~~d~~~~~~~~~~~~~----h~~~v~~~ 194 (239)
...++.|.+||+. .+.+. .+ .++..|.+||..+ ++++..+.. |.+....+
T Consensus 298 ~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 298 VKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp ETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSBCCTTCEEE
T ss_pred ECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCCCCCCCCccc
Confidence 7778999999986 22111 11 2345699999987 577777664 55444333
Q ss_pred EEccC-CCeEEEEc-CCceEEEEEccC-------CeeeEEec-CCCCeeeeEecC
Q psy11036 195 CLASG-GKRLISAS-LDHHAKIYEMVN-------FSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 195 ~~s~~-~~~l~s~s-~d~~i~iwd~~~-------~~~~~~~~-~~~~v~~~~~sp 239 (239)
++|+ +.+++++. .|++|.+||+.+ ++.++++. +...+..+++||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p 430 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP 430 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC
Confidence 4676 66777776 689999999998 89999998 556788888887
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-24 Score=167.32 Aligned_cols=194 Identities=12% Similarity=0.090 Sum_probs=145.8
Q ss_pred EEEEeeC--CCccee--eeeeCCceeeccceeeccCCCCCeEEEEEecC-------------CCCEEEEeeCC------C
Q psy11036 9 IVALWDI--PSEAQV--STFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV-------------SSDIVISGSYD------K 65 (239)
Q Consensus 9 ~i~vwd~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~~l~s~~~d------g 65 (239)
.|+|||+ .+++.+ ..+.+|. ..+..+++.+. .+..++.++.+ +
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~ 159 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNK--------------QWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPY 159 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECG--------------GGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCE
T ss_pred EEEEEeCCCCCCCEEeeeEEEcCh--------------hHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccc
Confidence 8999999 898877 4577887 56666665531 14556555544 7
Q ss_pred eEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-C---CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEE
Q psy11036 66 TVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-G---LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141 (239)
Q Consensus 66 ~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~---~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 141 (239)
.|++||+..+.......|...+.+++|+|+|+.+++++ + ..|++||+. +++.. .+..|...+.+++|+|+|+.|
T Consensus 160 ~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~-tg~~~-~l~~~~~~~~~~~~spdg~~l 237 (415)
T 2hqs_A 160 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAVR-QVASFPRHNGAPAFSPDGSKL 237 (415)
T ss_dssp EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-TCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred eEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC-CCcEE-EeecCCCcccCEEEcCCCCEE
Confidence 99999998554433337889999999999999999887 4 389999998 55544 566788899999999999988
Q ss_pred E-EEecCCe--EEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC-Cc--eEEEE
Q psy11036 142 I-SASLDHH--AKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL-DH--HAKIY 215 (239)
Q Consensus 142 ~-~~~~d~~--i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-d~--~i~iw 215 (239)
+ +++.++. |++||++ + ++ ...+..|...+.+++|+|||++|++++. ++ .|++|
T Consensus 238 a~~~~~~g~~~i~~~d~~-------------------~-~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 238 AFALSKTGSLNLYVMDLA-------------------S-GQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp EEEECTTSSCEEEEEETT-------------------T-CC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EEEEecCCCceEEEEECC-------------------C-CC-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 8 5665554 7777766 2 22 2445677888999999999999988876 45 68888
Q ss_pred EccCCeeeEEecCCCCeeeeEecC
Q psy11036 216 EMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 216 d~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
|+.+++......+...+.+++|+|
T Consensus 297 d~~~~~~~~l~~~~~~~~~~~~sp 320 (415)
T 2hqs_A 297 NINGGAPQRITWEGSQNQDADVSS 320 (415)
T ss_dssp ETTSSCCEECCCSSSEEEEEEECT
T ss_pred ECCCCCEEEEecCCCcccCeEECC
Confidence 998877544333667888999987
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=155.71 Aligned_cols=202 Identities=13% Similarity=0.177 Sum_probs=152.0
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEe-eCCCeEEEEeCCCCCc-eee
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISG-SYDKTVNVYDTRSPDP-VMS 80 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~v~vw~~~~~~~-~~~ 80 (239)
.++.++.|++||+++++.+..+..+. ..+ .++|+| ++++++++ ..++.|.+||+.+++. ...
T Consensus 15 ~~~~~~~v~~~d~~~~~~~~~~~~~~--------------~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 15 VEQHLRRISFFSTDTLEILNQITLGY--------------DFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp EEGGGTEEEEEETTTCCEEEEEECCC--------------CEE-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred EecCCCeEEEEeCcccceeeeEEccC--------------Ccc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 34567999999999999888887765 667 999999 67755554 4489999999999887 666
Q ss_pred ec-CCCCEEEEEEecCCcEEEEeCCC----cEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEE-ecCCe-EEEE
Q psy11036 81 VN-HGSPVESVLCLPSGGIFVTGGGL----DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA-SLDHH-AKIY 153 (239)
Q Consensus 81 ~~-~~~~v~~~~~~~~~~~l~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~-i~i~ 153 (239)
+. +..+..+++|+|++++++++.++ .|.+||+. .++.+..+..+ .....++|+|+|++++++ ..++. +.+|
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~ 156 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL-KNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRF 156 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT-TTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC-CCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEE
Confidence 64 44444449999999999966543 89999998 77777777644 456899999999866555 45578 9999
Q ss_pred Ecc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeE-EEEcCCceEEEEEccCCee---eEEecC
Q psy11036 154 EMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL-ISASLDHHAKIYEMVNFSP---VHTLDY 228 (239)
Q Consensus 154 d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~d~~i~iwd~~~~~~---~~~~~~ 228 (239)
++. ...+... . ...+ .....+..++|+|+|+++ +++..++.|++||+.+++. +..+..
T Consensus 157 ~~~~~g~~~~~---------------~-~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~ 219 (331)
T 3u4y_A 157 KIDADGVLFDT---------------G-QEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT 219 (331)
T ss_dssp EECTTCCEEEE---------------E-EEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred EECCCCcEeec---------------C-Cccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC
Confidence 987 1111111 0 1111 334557899999999965 5555789999999999998 888887
Q ss_pred CCCeeeeEecC
Q psy11036 229 PSPVLSIDVSM 239 (239)
Q Consensus 229 ~~~v~~~~~sp 239 (239)
...+..++|+|
T Consensus 220 ~~~~~~~~~sp 230 (331)
T 3u4y_A 220 NNLPGTIVVSR 230 (331)
T ss_dssp SSCCCCEEECT
T ss_pred CCCCceEEECC
Confidence 78889999987
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-22 Score=162.66 Aligned_cols=217 Identities=10% Similarity=0.096 Sum_probs=168.0
Q ss_pred CCCEEEEeeC--CCcceeeeeeCCceeeccceeeccCCCCCeEEEEEec----CCCCEEEEee-CCCeEEEEeCCCCCce
Q psy11036 6 PILIVALWDI--PSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSP----VSSDIVISGS-YDKTVNVYDTRSPDPV 78 (239)
Q Consensus 6 ~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~s~~-~dg~v~vw~~~~~~~~ 78 (239)
.++.|++||+ .+++.+.++..+ ..+..++|+| + ++++++++ .+++|.+||..+++++
T Consensus 198 ~d~~V~v~D~~~~t~~~~~~i~~g---------------~~p~~va~sp~~~~d-g~~l~v~~~~~~~v~v~D~~t~~~~ 261 (543)
T 1nir_A 198 RDARIDMIDLWAKEPTKVAEIKIG---------------IEARSVESSKFKGYE-DRYTIAGAYWPPQFAIMDGETLEPK 261 (543)
T ss_dssp TTSEEEEEETTSSSCEEEEEEECC---------------SEEEEEEECCSTTCT-TTEEEEEEEESSEEEEEETTTCCEE
T ss_pred CCCeEEEEECcCCCCcEEEEEecC---------------CCcceEEeCCCcCCC-CCEEEEEEccCCeEEEEeccccccc
Confidence 4699999999 888888888865 5679999998 5 56666666 5899999999999988
Q ss_pred eeecC------------CCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEE-EEEeccCCceEEEEEcCCCCEEEE
Q psy11036 79 MSVNH------------GSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLL-HKFTCHHKTVTSLCLASGGKRLIS 143 (239)
Q Consensus 79 ~~~~~------------~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~ 143 (239)
..+.. ...+..+.++|++..+++.. ++.|.+||........ ..+. +...+..+.|+|+|+++++
T Consensus 262 ~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~v 340 (543)
T 1nir_A 262 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMT 340 (543)
T ss_dssp EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEE
T ss_pred eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEE
Confidence 77632 23789999999877666554 6999999997322222 2343 5667889999999998766
Q ss_pred Ee-cCCeEEEEEcc-cceEeee------------------------e---cceeEEEEEccCC------CEEEEEEeccc
Q psy11036 144 AS-LDHHAKIYEMT-LKTVSSF------------------------T---GGLDVCIWDMLGG------GKLLHKFTCHH 188 (239)
Q Consensus 144 ~~-~d~~i~i~d~~-~~~~~~~------------------------~---~~~~i~~~d~~~~------~~~~~~~~~h~ 188 (239)
++ .+++|.+||+. ++.+..+ + ++..|.+||..+. .+.+..+..|.
T Consensus 341 a~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g 420 (543)
T 1nir_A 341 AANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG 420 (543)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred EecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC
Confidence 55 58999999997 4443332 1 2356899998762 67889999998
Q ss_pred CcEEEEEEccCCCeEEEEc-------CCceEEEEEccCCeee-EEe---------cCCCCeeeeEecC
Q psy11036 189 KTVTSLCLASGGKRLISAS-------LDHHAKIYEMVNFSPV-HTL---------DYPSPVLSIDVSM 239 (239)
Q Consensus 189 ~~v~~~~~s~~~~~l~s~s-------~d~~i~iwd~~~~~~~-~~~---------~~~~~v~~~~~sp 239 (239)
..+..++++|++++|++++ .+++|.+||+.+++.. ..+ .+...+..++|+|
T Consensus 421 ~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 488 (543)
T 1nir_A 421 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK 488 (543)
T ss_dssp SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC
Confidence 8889999999999999987 2779999999999877 444 2456788888886
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-21 Score=151.16 Aligned_cols=206 Identities=11% Similarity=0.093 Sum_probs=156.5
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee--CCCeEEEEeCCCCCceeeec
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS--YDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~v~vw~~~~~~~~~~~~ 82 (239)
..++.|.+||..+++.+..+..+... .........+.+++|+| +++.+++++ .++.|.+||..+++....+.
T Consensus 108 ~~~~~v~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~ 181 (353)
T 3vgz_A 108 TVNSAVTAIDAKTGEVKGRLVLDDRK-----RTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQ 181 (353)
T ss_dssp TTTTEEEEEETTTCCEEEEEESCCCC-----CCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEEC
T ss_pred cCCCEEEEEeCCCCeeEEEEecCCCc-----cccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEec
Confidence 34689999999999988888765300 00000001278999999 677666554 57899999999998888876
Q ss_pred -CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEec----cCCceEEEEEcCCCCEEEEEec-CCeEEEEEc
Q psy11036 83 -HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTC----HHKTVTSLCLASGGKRLISASL-DHHAKIYEM 155 (239)
Q Consensus 83 -~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~ 155 (239)
+...+..++|+|+++.++++. ++.+.+||+. .++....+.. +...+..++|+|+++++++++. ++.|.+||.
T Consensus 182 ~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 260 (353)
T 3vgz_A 182 NTGKMSTGLALDSEGKRLYTTNADGELITIDTA-DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT 260 (353)
T ss_dssp CCCTTCCCCEEETTTTEEEEECTTSEEEEEETT-TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET
T ss_pred CCCCccceEEECCCCCEEEEEcCCCeEEEEECC-CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 666688999999999988888 7999999998 7777777664 4556888999999997776665 489999998
Q ss_pred ccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEE-EEcCCceEEEEEccCCeeeEEecCCCCeee
Q psy11036 156 TLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLI-SASLDHHAKIYEMVNFSPVHTLDYPSPVLS 234 (239)
Q Consensus 156 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~ 234 (239)
. .++.+..+.... ...++|+|++++++ +...++.|.+||..+++.+..+.....+.+
T Consensus 261 ~--------------------~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 318 (353)
T 3vgz_A 261 R--------------------NGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNS 318 (353)
T ss_dssp T--------------------TCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEE
T ss_pred C--------------------CCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCe
Confidence 7 233333333322 24689999999655 445799999999999999999998888999
Q ss_pred eEecC
Q psy11036 235 IDVSM 239 (239)
Q Consensus 235 ~~~sp 239 (239)
++|+|
T Consensus 319 ~~~s~ 323 (353)
T 3vgz_A 319 LALSA 323 (353)
T ss_dssp EEECT
T ss_pred EEEcC
Confidence 99986
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=171.33 Aligned_cols=226 Identities=13% Similarity=0.052 Sum_probs=156.7
Q ss_pred EEEEeeCCCcceeeeeeCCceeec-cceeecc---------CCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC---
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYK-VPLMLYS---------TPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP--- 75 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~--- 75 (239)
.|++||+.+++....+..+..... ..+.... .....+.+++|+| ++++|++++. +.|++||+.++
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~ 142 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKA 142 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT-TSSEEEEEET-TEEEEEESSSCSTT
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC-CCCEEEEEeC-CcEEEEECCCCCcc
Confidence 899999999987776665430000 0000000 0001278899999 8898888876 99999999988
Q ss_pred CceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCc----------------eEEEEEcCCCC
Q psy11036 76 DPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKT----------------VTSLCLASGGK 139 (239)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~----------------i~~i~~~~~~~ 139 (239)
+......+...+..++|+|+|+.++.+.++.|.+||+. .++.......+... +..++|+|||+
T Consensus 143 ~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~ 221 (741)
T 2ecf_A 143 AVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLA-SGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS 221 (741)
T ss_dssp SCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETT-TTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS
T ss_pred eEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecC-CCCEEEeccCCccceeccccceeeeeccccccceEECCCCC
Confidence 44443367788999999999999999998899999998 55555443333332 47799999999
Q ss_pred EEEEEecCC---------------------------------eEEEEEccc-ceEeeee---------------------
Q psy11036 140 RLISASLDH---------------------------------HAKIYEMTL-KTVSSFT--------------------- 164 (239)
Q Consensus 140 ~l~~~~~d~---------------------------------~i~i~d~~~-~~~~~~~--------------------- 164 (239)
+|++++.|+ .|.+||+.+ .....+.
T Consensus 222 ~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~ 301 (741)
T 2ecf_A 222 AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLS 301 (741)
T ss_dssp CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEE
T ss_pred EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEE
Confidence 999988765 788888764 2211110
Q ss_pred --------cceeEEEEEccCCCEEEEEEecccC----cEEEEEEccCCCeEEEEcCCceEEEEEcc-CCeeeEEec-CCC
Q psy11036 165 --------GGLDVCIWDMLGGGKLLHKFTCHHK----TVTSLCLASGGKRLISASLDHHAKIYEMV-NFSPVHTLD-YPS 230 (239)
Q Consensus 165 --------~~~~i~~~d~~~~~~~~~~~~~h~~----~v~~~~~s~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~-~~~ 230 (239)
....|.+||+.+. +....+..+.. .+..++|+|||+++++++.||.++||.+. +++ ...+. +..
T Consensus 302 ~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~ 379 (741)
T 2ecf_A 302 FQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNW 379 (741)
T ss_dssp EEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSS
T ss_pred EEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecce
Confidence 1345888998764 44444444443 34688999999999999999988888765 344 55555 556
Q ss_pred Ceeee-EecC
Q psy11036 231 PVLSI-DVSM 239 (239)
Q Consensus 231 ~v~~~-~~sp 239 (239)
.+.++ +|+|
T Consensus 380 ~v~~~~~~s~ 389 (741)
T 2ecf_A 380 SVDELLAVDE 389 (741)
T ss_dssp CEEEEEEEET
T ss_pred EEEeEeEEeC
Confidence 77776 4876
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-23 Score=172.47 Aligned_cols=218 Identities=11% Similarity=0.055 Sum_probs=158.0
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCC---CeEEEEEecCCCCEEEEeeCC---------CeEEEEeC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQD---YVRAGTVSPVSSDIVISGSYD---------KTVNVYDT 72 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~d---------g~v~vw~~ 72 (239)
+.||.|++||+.+++....+..|. . .|.+++|+| ++++|++++.+ +.+.+||+
T Consensus 34 ~~dg~i~~~d~~~g~~~~~~~~~~--------------~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~ 98 (723)
T 1xfd_A 34 EQKGTVRLWNVETNTSTVLIEGKK--------------IESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKI 98 (723)
T ss_dssp CSSSCEEEBCGGGCCCEEEECTTT--------------TTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred eCCCCEEEEECCCCcEEEEecccc--------------ccccccceEEECC-CCCEEEEEecCccceeecceeeEEEEEC
Confidence 357999999999998887777765 3 489999999 89999888764 78889999
Q ss_pred CCCCceeee---cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCce------------------EE
Q psy11036 73 RSPDPVMSV---NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTV------------------TS 131 (239)
Q Consensus 73 ~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i------------------~~ 131 (239)
.+++..... .+...+..++|+|+|+.++.++++.|.+||+. .++.......+...+ .+
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 99 PHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHV-GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp SSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSS-SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred CCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECC-CCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence 988762222 23345889999999999999998999999998 555555554443333 78
Q ss_pred EEEcCCCCEEEEEecC-CeEEEEEcc-cc-----eEeee--------ecceeEEEEEccCCCEEEEEEecc------cCc
Q psy11036 132 LCLASGGKRLISASLD-HHAKIYEMT-LK-----TVSSF--------TGGLDVCIWDMLGGGKLLHKFTCH------HKT 190 (239)
Q Consensus 132 i~~~~~~~~l~~~~~d-~~i~i~d~~-~~-----~~~~~--------~~~~~i~~~d~~~~~~~~~~~~~h------~~~ 190 (239)
++|+|||+.|++++.| +.+.+|++. .. .+..+ .....+.+||+.+.. ....+..+ ...
T Consensus 178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~ 256 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-HDLEMMPPDDPRMREYY 256 (723)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-CCEECCCCCCGGGSSEE
T ss_pred EEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-eeEEeeCCccCCCccce
Confidence 9999999999988765 467777754 00 00000 112368999987643 23334433 567
Q ss_pred EEEEEEccCCCeEEEEc----CCceEEEEEccCCeeeEEec--CCCCee----eeEecC
Q psy11036 191 VTSLCLASGGKRLISAS----LDHHAKIYEMVNFSPVHTLD--YPSPVL----SIDVSM 239 (239)
Q Consensus 191 v~~~~~s~~~~~l~s~s----~d~~i~iwd~~~~~~~~~~~--~~~~v~----~~~~sp 239 (239)
+..++|||||++|++.+ .+..|++||+.+++....+. +...+. +++|||
T Consensus 257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp 315 (723)
T 1xfd_A 257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK 315 (723)
T ss_dssp EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT
T ss_pred eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcC
Confidence 89999999999987764 34689999999998766554 333333 778876
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-21 Score=148.58 Aligned_cols=195 Identities=14% Similarity=0.107 Sum_probs=154.5
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCC-EEEEeeCCCeEEEEeCCCCCceeeecCC-
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSD-IVISGSYDKTVNVYDTRSPDPVMSVNHG- 84 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~- 84 (239)
++.|.+||..+++.+..+... ..+..++|+| +++ ++++...++.|.+||..+++.+..+...
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~---------------~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~ 131 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHND---------------LKPFGATINN-TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDD 131 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEES---------------SCCCSEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEEESCC
T ss_pred CccEEEEcCCCCeEEEEEecC---------------CCcceEEECC-CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCC
Confidence 789999999999988888765 4467899999 566 5566666899999999999887777321
Q ss_pred -C--------CEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy11036 85 -S--------PVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 152 (239)
Q Consensus 85 -~--------~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 152 (239)
. .+.+++|+|+++.++++. ++.|.+||+. .++....+..+...+..++|+|+++++++++.++.|.+
T Consensus 132 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~ 210 (353)
T 3vgz_A 132 RKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG-NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELIT 210 (353)
T ss_dssp CCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEE
T ss_pred CccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEE
Confidence 1 278899999999777665 5889999998 78888877756666889999999999999999999999
Q ss_pred EEcccceEeeeecceeEEEEEccCCCEEEEEEe----cccCcEEEEEEccCCCeEEEEc-CCceEEEEEccCCeeeEEec
Q psy11036 153 YEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFT----CHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 153 ~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----~h~~~v~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~ 227 (239)
||+. ..+....+. ++...+..++|+|++++++.++ .++.|.+||..+++.+..+.
T Consensus 211 ~d~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 211 IDTA--------------------DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp EETT--------------------TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred EECC--------------------CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 9987 233333333 2455688899999999776655 45999999999999998888
Q ss_pred CCCCeeeeEecC
Q psy11036 228 YPSPVLSIDVSM 239 (239)
Q Consensus 228 ~~~~v~~~~~sp 239 (239)
...+ ..++|+|
T Consensus 271 ~~~~-~~~~~s~ 281 (353)
T 3vgz_A 271 APES-LAVLFNP 281 (353)
T ss_dssp CSSC-CCEEEET
T ss_pred cCCC-ceEEECC
Confidence 5444 5677765
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=150.23 Aligned_cols=220 Identities=9% Similarity=0.122 Sum_probs=153.2
Q ss_pred CCCCCCEEEEeeCC-Cc--ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC-CeEEEEeCC--CCC
Q psy11036 3 HDLPILIVALWDIP-SE--AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD-KTVNVYDTR--SPD 76 (239)
Q Consensus 3 ~~~~dg~i~vwd~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~v~vw~~~--~~~ 76 (239)
.++.++.|++||++ ++ +.+..+. +. ..+.+++|+| ++++|++++.+ +.|++|++. +++
T Consensus 10 ~~~~~~~v~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~ 73 (343)
T 1ri6_A 10 ASPESQQIHVWNLNHEGALTLTQVVD-VP--------------GQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGA 73 (343)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEE-CS--------------SCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred eCCCCCeEEEEEECCCCcEEEeeeEe-cC--------------CCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCc
Confidence 34678999999985 33 2333333 43 6788999999 78878777776 999999997 555
Q ss_pred c--eeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccC--CCeEEEEEeccCCceEEEEEcCCCCEEEEEe-cCCe
Q psy11036 77 P--VMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLG--GGKLLHKFTCHHKTVTSLCLASGGKRLISAS-LDHH 149 (239)
Q Consensus 77 ~--~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~ 149 (239)
. +..+.....+..++|+|+++++++++ ++.|.+||+.. ..+....+.. ...+.+++|+|+++++++++ .++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~ 152 (343)
T 1ri6_A 74 LTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDR 152 (343)
T ss_dssp EEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTE
T ss_pred eeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCE
Confidence 3 23444445889999999999887665 68899999951 2334444443 34588999999999888877 8999
Q ss_pred EEEEEccc-ceEe-----ee------------------------ecceeEEEEEccCC-C--EEEEEEec----c--cCc
Q psy11036 150 AKIYEMTL-KTVS-----SF------------------------TGGLDVCIWDMLGG-G--KLLHKFTC----H--HKT 190 (239)
Q Consensus 150 i~i~d~~~-~~~~-----~~------------------------~~~~~i~~~d~~~~-~--~~~~~~~~----h--~~~ 190 (239)
|.+||+.. ..+. .+ .....+.+||+... + ........ + ...
T Consensus 153 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 232 (343)
T 1ri6_A 153 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW 232 (343)
T ss_dssp EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCC
Confidence 99999872 2111 11 12345889998531 2 12222221 1 235
Q ss_pred EEEEEEccCCCeEE-EEcCCceEEEEEcc----CCeeeEEecCCCCeeeeEecC
Q psy11036 191 VTSLCLASGGKRLI-SASLDHHAKIYEMV----NFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 191 v~~~~~s~~~~~l~-s~s~d~~i~iwd~~----~~~~~~~~~~~~~v~~~~~sp 239 (239)
+..++|+|++++|+ ++..++.|++||+. +.+.+..+.....+.+++|+|
T Consensus 233 ~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (343)
T 1ri6_A 233 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH 286 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT
T ss_pred ccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECC
Confidence 67899999998876 55589999999998 345566666555688899986
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=160.35 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=123.5
Q ss_pred CCeEEEEEecCCCCEEE----EeeCCCeEEEEeCCCC--------Cce---eee-cCCCCEEEEEEecC-CcEEEEeC-C
Q psy11036 43 DYVRAGTVSPVSSDIVI----SGSYDKTVNVYDTRSP--------DPV---MSV-NHGSPVESVLCLPS-GGIFVTGG-G 104 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~----s~~~dg~v~vw~~~~~--------~~~---~~~-~~~~~v~~~~~~~~-~~~l~~~~-~ 104 (239)
..|.+++|+| ++++|+ +|+.|+.|++||+.++ +++ ..+ .|...|.+++|+|+ +.++++++ |
T Consensus 93 ~~v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 93 FPIHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SCEEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CcccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 6799999999 788888 8899999999998654 222 222 47899999999997 78888887 8
Q ss_pred CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEE
Q psy11036 105 LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKF 184 (239)
Q Consensus 105 ~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 184 (239)
+.|++||++ .+........|...|.+++|+|+|++|++|+.||.|++||++++....+... . ...
T Consensus 172 g~v~iwD~~-~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~-----------~---~~~ 236 (434)
T 2oit_A 172 GSIAVLQVT-ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCP-----------P---FYE 236 (434)
T ss_dssp SCEEEEEES-SSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCC-----------T---TCC
T ss_pred CeEEEEEcC-CCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCC-----------c---ccC
Confidence 999999998 5566666677899999999999999999999999999999872222222000 0 000
Q ss_pred ecccCcEEEEEEccCCCeEEEE-cCCc------eEEEEEccCC
Q psy11036 185 TCHHKTVTSLCLASGGKRLISA-SLDH------HAKIYEMVNF 220 (239)
Q Consensus 185 ~~h~~~v~~~~~s~~~~~l~s~-s~d~------~i~iwd~~~~ 220 (239)
..|...|.+++|++++.++++. +.|| .+++|++.+.
T Consensus 237 ~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 237 SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 1233479999999998887543 3443 3899999764
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-21 Score=148.93 Aligned_cols=216 Identities=10% Similarity=0.036 Sum_probs=158.5
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCE-EEEeeCCCeEEEEeCCCCCceeeec
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDI-VISGSYDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~dg~v~vw~~~~~~~~~~~~ 82 (239)
.+.++.|++||+.+++.+..+..+.. ..+..++|+| +++. ++++..++.|.+||+.+++....+.
T Consensus 17 ~~~~~~v~~~d~~~~~~~~~~~~~~~-------------~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 17 TNYPNNLHVVDVASDTVYKSCVMPDK-------------FGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp EETTTEEEEEETTTTEEEEEEECSSC-------------CSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eCCCCeEEEEECCCCcEEEEEecCCC-------------CCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 45689999999999998888775520 2577999999 6664 5566678999999999988776664
Q ss_pred CC-------CCEEEEEEecCCcEEEEeC-C------------CcEEEEEccCC--CeEEEEEeccCCceEEEEEcCCCCE
Q psy11036 83 HG-------SPVESVLCLPSGGIFVTGG-G------------LDVCIWDMLGG--GKLLHKFTCHHKTVTSLCLASGGKR 140 (239)
Q Consensus 83 ~~-------~~v~~~~~~~~~~~l~~~~-~------------~~i~~~d~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~ 140 (239)
.. ..+..++|+|+|++++++. + +.|.+||+... .+.+..+. +...+.+++|+|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS- 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence 22 2378899999999998887 3 89999999721 22233444 334688999999999
Q ss_pred EEEEecCCeEEEEEcc-cceEeeeecce-----------------------------------------------eEEEE
Q psy11036 141 LISASLDHHAKIYEMT-LKTVSSFTGGL-----------------------------------------------DVCIW 172 (239)
Q Consensus 141 l~~~~~d~~i~i~d~~-~~~~~~~~~~~-----------------------------------------------~i~~~ 172 (239)
+++++ +.|.+||+. ++.+..+.... ....+
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 55553 449999998 55554442110 01124
Q ss_pred EccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEcCCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 173 DMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 173 d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
|..+.......+..+...+..++|+| ++++++++ ++.|.+||+.+++.+..+.....+.+++|+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~ 304 (349)
T 1jmx_B 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDK 304 (349)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECS
T ss_pred eccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECC
Confidence 55544444444445566788999999 99999888 8999999999999999888777788999986
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-20 Score=143.87 Aligned_cols=200 Identities=12% Similarity=0.187 Sum_probs=144.6
Q ss_pred CCEEEEeeCCCcce-eeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCC---eEEEEeCCCCCceeeec
Q psy11036 7 ILIVALWDIPSEAQ-VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDK---TVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 7 dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~v~vw~~~~~~~~~~~~ 82 (239)
++.|++||+.+++. ...+..+. .+..+++|+| ++++++++..++ .|.+||+.+++.+..+.
T Consensus 61 ~~~i~~~d~~~~~~~~~~~~~~~--------------~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~ 125 (331)
T 3u4y_A 61 CQTLVQIETQLEPPKVVAIQEGQ--------------SSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP 125 (331)
T ss_dssp TCEEEEEECSSSSCEEEEEEECS--------------SCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEECCCCceeEEecccCC--------------CCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEE
Confidence 68999999999887 67777665 5555599999 788888655553 89999999998888777
Q ss_pred CCCCEEEEEEecCCcEEEEeC--CCc-EEEEEccCCCeEE---EEEeccCCceEEEEEcCCCCEEEEE-ecCCeEEEEEc
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG--GLD-VCIWDMLGGGKLL---HKFTCHHKTVTSLCLASGGKRLISA-SLDHHAKIYEM 155 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~--~~~-i~~~d~~~~~~~~---~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~ 155 (239)
......+++|+|+|++++++. ++. +.+|++...+... ............++|+|+|++++++ ..++.|.+||+
T Consensus 126 ~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 205 (331)
T 3u4y_A 126 IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILET 205 (331)
T ss_dssp CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence 677789999999998666654 478 9999997444332 1222344567999999999966554 46899999999
Q ss_pred c-cce---Eeee----------------------ecceeEEEEEccCCCEE--EEEEecc----cC---cEEEEEEccCC
Q psy11036 156 T-LKT---VSSF----------------------TGGLDVCIWDMLGGGKL--LHKFTCH----HK---TVTSLCLASGG 200 (239)
Q Consensus 156 ~-~~~---~~~~----------------------~~~~~i~~~d~~~~~~~--~~~~~~h----~~---~v~~~~~s~~~ 200 (239)
. ++. +..+ .+...+.+||..+. +. +..+..+ .. ....++|+|++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 284 (331)
T 3u4y_A 206 QNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG-TLSFVKSFGHGLLIDPRPLFGANQMALNKTE 284 (331)
T ss_dssp SSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT-EEEEEEEEECCCCCCCGGGTTCCCEEECTTS
T ss_pred CCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC-ceeeecccccccccCCCCcccccceEECCCC
Confidence 8 554 4443 12445889998763 33 3333322 12 22458999999
Q ss_pred CeEEEE-cCCceEEEEEccCCee
Q psy11036 201 KRLISA-SLDHHAKIYEMVNFSP 222 (239)
Q Consensus 201 ~~l~s~-s~d~~i~iwd~~~~~~ 222 (239)
++|+++ ..++.|.+||+.....
T Consensus 285 ~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 285 TKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp SEEEEEETTTTEEEEEETTSCEE
T ss_pred CEEEEecCCCCcEEEEEecCCcc
Confidence 988655 5567999999977554
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-20 Score=145.33 Aligned_cols=216 Identities=13% Similarity=0.112 Sum_probs=150.3
Q ss_pred CCEEEEeeCC--Ccc--eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee-CCCeEEEEeCC---CCCce
Q psy11036 7 ILIVALWDIP--SEA--QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS-YDKTVNVYDTR---SPDPV 78 (239)
Q Consensus 7 dg~i~vwd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~vw~~~---~~~~~ 78 (239)
++.|.+|+++ +++ .+..+..+ ..+..++|+| +++++++++ .++.|.+||+. +.+..
T Consensus 59 ~~~v~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 122 (343)
T 1ri6_A 59 EFRVLAYRIAPDDGALTFAAESALP---------------GSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVV 122 (343)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEECS---------------SCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred CCeEEEEEecCCCCceeeccccccC---------------CCCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCcccccc
Confidence 3899999987 454 33344433 4678999999 677665555 58899999994 33344
Q ss_pred eeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEE----EEec-cCCceEEEEEcCCCCEEEEEe-cCCeE
Q psy11036 79 MSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLH----KFTC-HHKTVTSLCLASGGKRLISAS-LDHHA 150 (239)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~----~~~~-~~~~i~~i~~~~~~~~l~~~~-~d~~i 150 (239)
..+.....+.+++|+|+++.+++++ ++.|.+||+...++... .... ....+..++|+|+++++++++ .++.|
T Consensus 123 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i 202 (343)
T 1ri6_A 123 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSV 202 (343)
T ss_dssp EEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred ccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEE
Confidence 4455556789999999999877775 69999999984254332 2232 344788999999999776555 78999
Q ss_pred EEEEccc---ce-----Ee---------------ee-----------ecceeEEEEEccC---CCEEEEEEecccCcEEE
Q psy11036 151 KIYEMTL---KT-----VS---------------SF-----------TGGLDVCIWDMLG---GGKLLHKFTCHHKTVTS 193 (239)
Q Consensus 151 ~i~d~~~---~~-----~~---------------~~-----------~~~~~i~~~d~~~---~~~~~~~~~~h~~~v~~ 193 (239)
.+|+++. +. +. .+ .+++.+.+||+.. ..+.+..+..+.. +..
T Consensus 203 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~ 281 (343)
T 1ri6_A 203 DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRG 281 (343)
T ss_dssp EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCC
T ss_pred EEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cce
Confidence 9999841 10 11 01 1244588999873 2344555555444 889
Q ss_pred EEEccCCCeEEEEc-CCceEEEEEc--cCCe--eeEEecCCCCeeeeEecC
Q psy11036 194 LCLASGGKRLISAS-LDHHAKIYEM--VNFS--PVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 194 ~~~s~~~~~l~s~s-~d~~i~iwd~--~~~~--~~~~~~~~~~v~~~~~sp 239 (239)
++|+|+|++|++++ .++.|.+|++ .+++ .+..+.......+++|.|
T Consensus 282 ~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~ 332 (343)
T 1ri6_A 282 FNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNA 332 (343)
T ss_dssp EEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEE
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEc
Confidence 99999999888877 6899999955 4663 455666656777888764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-21 Score=145.23 Aligned_cols=208 Identities=9% Similarity=0.055 Sum_probs=148.1
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee------------CCCeEEEEeCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS------------YDKTVNVYDTR 73 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------------~dg~v~vw~~~ 73 (239)
.++.|++||+.+++.+..+..... ..+...+.+++|+| ++++++++. .++.|.+||+.
T Consensus 54 ~~~~v~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~ 123 (337)
T 1pby_B 54 KSESLVKIDLVTGETLGRIDLSTP---------EERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123 (337)
T ss_dssp TTTEEEEEETTTCCEEEEEECCBT---------TEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETT
T ss_pred CCCeEEEEECCCCCeEeeEEcCCc---------ccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECC
Confidence 468999999999988877664210 00002566899999 787887775 57999999999
Q ss_pred CCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCC-----
Q psy11036 74 SPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH----- 148 (239)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~----- 148 (239)
+++....+.....+.+++|+|++++++++ ++.|.+||+. .++....+..+... ..+.|+|+++.++..+.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~-~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~ 200 (337)
T 1pby_B 124 TLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPE-AGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMAT 200 (337)
T ss_dssp TTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETT-TTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred CCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECC-CCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceee
Confidence 88887777666678889999999988887 6889999998 67776666544311 1236777776555443322
Q ss_pred -------------------eEEEEEcc-cceE-------------eee--------ecceeEEEEEccCCCEEEEEEecc
Q psy11036 149 -------------------HAKIYEMT-LKTV-------------SSF--------TGGLDVCIWDMLGGGKLLHKFTCH 187 (239)
Q Consensus 149 -------------------~i~i~d~~-~~~~-------------~~~--------~~~~~i~~~d~~~~~~~~~~~~~h 187 (239)
.|.+||+. ++.. ..+ .++..+.+||+.+ .+.+..+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~-~~~~~~~~~- 278 (337)
T 1pby_B 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEK-NASIKRVPL- 278 (337)
T ss_dssp EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTT-TEEEEEEEC-
T ss_pred eeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEeCCeEEEEECCC-CcCcceecC-
Confidence 35677766 2221 011 1234577888765 555555554
Q ss_pred cCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecC
Q psy11036 188 HKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDY 228 (239)
Q Consensus 188 ~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 228 (239)
...+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus 279 ~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 279 PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 34578999999999999999999999999999999988873
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-20 Score=141.76 Aligned_cols=191 Identities=12% Similarity=0.094 Sum_probs=134.4
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC------------CeEEEEeCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD------------KTVNVYDTR 73 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------------g~v~vw~~~ 73 (239)
.++.|++||+.+++.+..+..+... ......+..++|+| +++++++++.+ +.|.+||+.
T Consensus 63 ~~~~i~~~d~~t~~~~~~~~~~~~~--------~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~ 133 (349)
T 1jmx_B 63 HYGDIYGIDLDTCKNTFHANLSSVP--------GEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 133 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEESCCST--------TEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred CCCcEEEEeCCCCcEEEEEEccccc--------ccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECC
Confidence 4689999999999887777643200 00003377899999 78888888765 899999998
Q ss_pred CCCc---eeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccC------------------------
Q psy11036 74 SPDP---VMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHH------------------------ 126 (239)
Q Consensus 74 ~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~------------------------ 126 (239)
+++. +..+.+...+.+++|+|+++ +++++ +.|.+||+. +++....+..+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~-~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (349)
T 1jmx_B 134 DGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG-PDIYKMDVK-TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 210 (349)
T ss_dssp GGGGBCCSEEEECCSSCCCEEECTTSC-EEEES-SSEEEECTT-TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred CccccceeeeccCCCcccceeECCCCc-EEEcc-CcEEEEeCC-CCceeccccccccCCccccCccceeeecCCCcceeE
Confidence 8543 33444556788999999999 55543 449999997 566665554321
Q ss_pred --------------------------------------------CceEEEEEcC-CCCEEEEEecCCeEEEEEcccceEe
Q psy11036 127 --------------------------------------------KTVTSLCLAS-GGKRLISASLDHHAKIYEMTLKTVS 161 (239)
Q Consensus 127 --------------------------------------------~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~ 161 (239)
..+..++|+| ++++++++ ++.|.+||+.
T Consensus 211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~----- 283 (349)
T 1jmx_B 211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLK----- 283 (349)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETT-----
T ss_pred EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECc-----
Confidence 1234455566 66666665 6666666665
Q ss_pred eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCC
Q psy11036 162 SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSP 231 (239)
Q Consensus 162 ~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~ 231 (239)
..+.+..+.. ...+.+++|+|++++|++++.++.|++||+.+++.+..++.++.
T Consensus 284 ---------------~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~ 337 (349)
T 1jmx_B 284 ---------------QRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 337 (349)
T ss_dssp ---------------TTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred ---------------cCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecCCC
Confidence 2454444443 34567899999999998888899999999999999999885543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.5e-21 Score=165.77 Aligned_cols=204 Identities=12% Similarity=0.011 Sum_probs=151.5
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEe-cCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVS-PVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGS 85 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 85 (239)
++.|++||+...+ +..+..+.... ......+...+.+++|+ | +++.|++++ ++.+.+|++.+++......+..
T Consensus 264 ~~~i~~~d~~~~~-l~~l~~~~~~~---~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~ 337 (1045)
T 1k32_A 264 GGSIYIFNPDTEK-IEKIEIGDLES---PEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLR 337 (1045)
T ss_dssp TTEEEEECTTTCC-EEECCCCCCCB---CCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSCCSC
T ss_pred CCEEEEecCCceE-eeeeccCcccc---cccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccCCCc
Confidence 7899999984443 33554421000 00000011468899999 9 788887777 7899999998776554335666
Q ss_pred -CEEEEEEecCCcEEEEeC-CCcEE-EEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEee
Q psy11036 86 -PVESVLCLPSGGIFVTGG-GLDVC-IWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSS 162 (239)
Q Consensus 86 -~v~~~~~~~~~~~l~~~~-~~~i~-~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 162 (239)
.+..++|+ +|+.++.++ ++.+. +|++. .++. ..+..|...+..++|+|+|++|++++.++.|++||+.
T Consensus 338 ~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~-~~~~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~------ 408 (1045)
T 1k32_A 338 IRYVRRGGD-TKVAFIHGTREGDFLGIYDYR-TGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE------ 408 (1045)
T ss_dssp EEEEEECSS-SEEEEEEEETTEEEEEEEETT-TCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT------
T ss_pred ceEEeeeEc-CCCeEEEEECCCceEEEEECC-CCCc-eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECC------
Confidence 89999999 999888887 46677 88986 4443 3444778899999999999999999999999999987
Q ss_pred eecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCC----------ceEEEEEccCCeeeEEecCCCCe
Q psy11036 163 FTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD----------HHAKIYEMVNFSPVHTLDYPSPV 232 (239)
Q Consensus 163 ~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d----------~~i~iwd~~~~~~~~~~~~~~~v 232 (239)
.++......+|...+..++|+|||++|++++.+ +.|++||+.+++......+...+
T Consensus 409 --------------tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~ 474 (1045)
T 1k32_A 409 --------------TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD 474 (1045)
T ss_dssp --------------TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBE
T ss_pred --------------CCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCccc
Confidence 344555556788889999999999999888764 48999999998843333366778
Q ss_pred eeeEecC
Q psy11036 233 LSIDVSM 239 (239)
Q Consensus 233 ~~~~~sp 239 (239)
.+++|+|
T Consensus 475 ~~~~~sp 481 (1045)
T 1k32_A 475 YAPAFDA 481 (1045)
T ss_dssp EEEEECT
T ss_pred CCceEcC
Confidence 8899987
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-19 Score=136.61 Aligned_cols=200 Identities=14% Similarity=0.141 Sum_probs=136.4
Q ss_pred CCEEEEeeCCCcc--eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee-CCCeEEEEeCCC-CC--ceee
Q psy11036 7 ILIVALWDIPSEA--QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS-YDKTVNVYDTRS-PD--PVMS 80 (239)
Q Consensus 7 dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~vw~~~~-~~--~~~~ 80 (239)
++.|++||+.+++ .+..+..+. ..+..++|+| ++++|++++ .++.+.+|++.. +. .+..
T Consensus 62 ~~~v~~~~~~~g~~~~~~~~~~~~--------------~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~ 126 (347)
T 3hfq_A 62 EGGIAAWQIDGQTAHKLNTVVAPG--------------TPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDT 126 (347)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEES--------------CCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred CceEEEEEecCCcEEEeeeeecCC--------------CCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecce
Confidence 6899999997665 334444454 6788999999 788777776 789999999963 32 2222
Q ss_pred ecCC----------CCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE--EEEecc-CCceEEEEEcCCCCEEEE-Ee
Q psy11036 81 VNHG----------SPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL--HKFTCH-HKTVTSLCLASGGKRLIS-AS 145 (239)
Q Consensus 81 ~~~~----------~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~--~~~~~~-~~~i~~i~~~~~~~~l~~-~~ 145 (239)
+... ..+.+++|+|+++++++.. ++.|.+|++...++.. ..+..+ ......++|+|+|+++++ ..
T Consensus 127 ~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~ 206 (347)
T 3hfq_A 127 VQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE 206 (347)
T ss_dssp EECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred eecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC
Confidence 2221 2488999999999555554 6889999997334322 222222 336788999999996665 55
Q ss_pred cCCeEEEEEccc--ceEeeeecceeEEEEEccCCCEEEEEEeccc------CcEEEEEEccCCCeE-EEEcCCceEEEEE
Q psy11036 146 LDHHAKIYEMTL--KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH------KTVTSLCLASGGKRL-ISASLDHHAKIYE 216 (239)
Q Consensus 146 ~d~~i~i~d~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~------~~v~~~~~s~~~~~l-~s~s~d~~i~iwd 216 (239)
.++.|.+|+++. ..+ .....+.... ..+..++|+|||++| ++...++.|.+|+
T Consensus 207 ~~~~v~v~~~~~~~g~~------------------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 207 LSSQIASLKYDTQTGAF------------------TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp TTTEEEEEEEETTTTEE------------------EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred CCCEEEEEEecCCCCce------------------EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 688999998871 111 1111222211 458899999999987 5566789999999
Q ss_pred cc---CCeeeEEecC-CCCeeeeEecC
Q psy11036 217 MV---NFSPVHTLDY-PSPVLSIDVSM 239 (239)
Q Consensus 217 ~~---~~~~~~~~~~-~~~v~~~~~sp 239 (239)
+. +.+.+..+.. ...+.+++|+|
T Consensus 269 ~~~~g~~~~~~~~~~~~~~~~~~~~sp 295 (347)
T 3hfq_A 269 VTADGHLTLIQQISTEGDFPRDFDLDP 295 (347)
T ss_dssp ECGGGCEEEEEEEECSSSCCCEEEECT
T ss_pred ECCCCcEEEeEEEecCCCCcCeEEECC
Confidence 96 3355566653 55688999987
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-22 Score=168.37 Aligned_cols=221 Identities=12% Similarity=0.060 Sum_probs=150.7
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC---------CCeEEEEeCCCCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY---------DKTVNVYDTRSPD 76 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---------dg~v~vw~~~~~~ 76 (239)
.|+.|++||+.+++....+..+.. ....+.+++|+| ++++|++++. ++.|++||+.+++
T Consensus 34 ~d~~i~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~ 101 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTILSNRTM-----------KSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGE 101 (719)
T ss_dssp TTSCEEEEESSSCCEEEEECHHHH-----------HTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred CCCCEEEEEcCCCcEEEEEccccc-----------cccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCc
Confidence 578999999999988777766540 001488999999 8898888776 7899999999887
Q ss_pred ceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEE-eccCCce-----------------EEEEEcCCC
Q psy11036 77 PVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKF-TCHHKTV-----------------TSLCLASGG 138 (239)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~i-----------------~~i~~~~~~ 138 (239)
.+........+..++|+|+|+.|+.+.++.|++|++. .++..... .++...+ .+++|+|||
T Consensus 102 ~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~-~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG 180 (719)
T 1z68_A 102 FVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRP-GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG 180 (719)
T ss_dssp ECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESST-TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS
T ss_pred cccceecCcccccceECCCCCEEEEEECCeEEEEeCC-CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC
Confidence 6321222356889999999999999999999999997 44443322 2222222 489999999
Q ss_pred CEEEEEecC-CeEEEEEcc--c----ceEeee--------ecceeEEEEEccCCCE----EE---EEEecccCcEEEEEE
Q psy11036 139 KRLISASLD-HHAKIYEMT--L----KTVSSF--------TGGLDVCIWDMLGGGK----LL---HKFTCHHKTVTSLCL 196 (239)
Q Consensus 139 ~~l~~~~~d-~~i~i~d~~--~----~~~~~~--------~~~~~i~~~d~~~~~~----~~---~~~~~h~~~v~~~~~ 196 (239)
++|++++.| +.+.+|.+. . .....+ .....+.+||+.+... .+ ..+.+|...+..++|
T Consensus 181 ~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (719)
T 1z68_A 181 KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTW 260 (719)
T ss_dssp SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEE
T ss_pred CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEE
Confidence 999998765 444555432 0 001111 1233588899876432 11 112357778999999
Q ss_pred ccCCCeEEEEcCC----ceEEEEE----ccCCeeeEEe-----cCCCCee-----eeEecC
Q psy11036 197 ASGGKRLISASLD----HHAKIYE----MVNFSPVHTL-----DYPSPVL-----SIDVSM 239 (239)
Q Consensus 197 s~~~~~l~s~s~d----~~i~iwd----~~~~~~~~~~-----~~~~~v~-----~~~~sp 239 (239)
+||++++++.... ..|.+|| ..+++....+ .+...+. .++|+|
T Consensus 261 SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 321 (719)
T 1z68_A 261 VTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY 321 (719)
T ss_dssp SSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT
T ss_pred eCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECC
Confidence 9998887774422 3588899 7777765544 2445555 777876
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-20 Score=154.54 Aligned_cols=215 Identities=14% Similarity=0.095 Sum_probs=148.3
Q ss_pred CCCCCC------CCEEEEeeCCC-----cceeeeeeCCce--eeccceeeccCCCCCeEEEEEecCCCCEEEEee-----
Q psy11036 1 MSHDLP------ILIVALWDIPS-----EAQVSTFTNHTT--IYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS----- 62 (239)
Q Consensus 1 fs~~~~------dg~i~vwd~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----- 62 (239)
|||||+ ++.|++||+.+ ++.......+.. ..+.+ .+......+.+++|+| ++++|++++
T Consensus 128 ~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~--~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~ 204 (706)
T 2z3z_A 128 FSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQA--VHQREFGIEKGTFWSP-KGSCLAFYRMDQSM 204 (706)
T ss_dssp ECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSC--CGGGCTTCCCSEEECT-TSSEEEEEEEECTT
T ss_pred CCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccc--hhhhhcCCCceEEECC-CCCEEEEEEECCCC
Confidence 567764 68999999988 776655544430 00000 0000112358999999 788888887
Q ss_pred ----------------------------CCCeEEEEeCCCCCceeee---cCCCCEEEEEEecCCcEEEEeC-CC-----
Q psy11036 63 ----------------------------YDKTVNVYDTRSPDPVMSV---NHGSPVESVLCLPSGGIFVTGG-GL----- 105 (239)
Q Consensus 63 ----------------------------~dg~v~vw~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~~----- 105 (239)
.+..|.+||+.+++..... .+...+..++|+|+|+.++++. ++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 284 (706)
T 2z3z_A 205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNEC 284 (706)
T ss_dssp SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEE
T ss_pred CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCee
Confidence 4468999999988755443 3556789999999999888865 43
Q ss_pred cEEEEEccCCC-eEEEEEec-cCC---ceEEEEEcC--CCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCC
Q psy11036 106 DVCIWDMLGGG-KLLHKFTC-HHK---TVTSLCLAS--GGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178 (239)
Q Consensus 106 ~i~~~d~~~~~-~~~~~~~~-~~~---~i~~i~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~ 178 (239)
.|.+||+. ++ ........ +.. .+..++|+| +|++++++..|+.++||.++ ..+
T Consensus 285 ~v~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~-------------------~~~ 344 (706)
T 2z3z_A 285 KVNAYDAE-TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD-------------------TTG 344 (706)
T ss_dssp EEEEEETT-TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE-------------------TTS
T ss_pred EEEEEECC-CCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE-------------------CCC
Confidence 79999998 55 33322222 222 246789999 99999999999998888765 113
Q ss_pred EEEEEEecccCcEEE-EEEccCCCeEEEE-cCCc----eEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 179 KLLHKFTCHHKTVTS-LCLASGGKRLISA-SLDH----HAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 179 ~~~~~~~~h~~~v~~-~~~s~~~~~l~s~-s~d~----~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
..+..+..|...+.. ++|+|+++.|+.+ +.++ .|..||+.+++ +..+.+...+.+++|||
T Consensus 345 ~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~sp 410 (706)
T 2z3z_A 345 RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSP 410 (706)
T ss_dssp CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECT
T ss_pred CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECC
Confidence 334444566677776 7999999877654 4444 67777877766 55566777889999987
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-20 Score=154.55 Aligned_cols=220 Identities=11% Similarity=0.035 Sum_probs=155.6
Q ss_pred CCCCCC------CCEEEEeeCCCcc--eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeC
Q psy11036 1 MSHDLP------ILIVALWDIPSEA--QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDT 72 (239)
Q Consensus 1 fs~~~~------dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~ 72 (239)
|||||+ ++.|++||+.+++ ....+..+. ..+..++|+| ++++|+.++ ++.|++||+
T Consensus 116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~--------------~~~~~~~~SP-DG~~la~~~-~~~i~~~d~ 179 (741)
T 2ecf_A 116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGE--------------GFATDAKLSP-KGGFVSFIR-GRNLWVIDL 179 (741)
T ss_dssp ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSS--------------SCEEEEEECT-TSSEEEEEE-TTEEEEEET
T ss_pred ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCC--------------cccccccCCC-CCCEEEEEe-CCcEEEEec
Confidence 466664 3899999998873 345566676 7899999999 888888877 469999999
Q ss_pred CCCCceeeec-CCCC----------------EEEEEEecCCcEEEEeC-CC-----------------------------
Q psy11036 73 RSPDPVMSVN-HGSP----------------VESVLCLPSGGIFVTGG-GL----------------------------- 105 (239)
Q Consensus 73 ~~~~~~~~~~-~~~~----------------v~~~~~~~~~~~l~~~~-~~----------------------------- 105 (239)
.+++...... +... +..++|+|+|+.|++++ ++
T Consensus 180 ~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 259 (741)
T 2ecf_A 180 ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA 259 (741)
T ss_dssp TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred CCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence 9876654442 2222 47899999999998876 43
Q ss_pred ----cEEEEEccCC-CeEEEEEe--ccCCceEEEEEcCCCCEEEEEec-----CCeEEEEEcc-cceEeee---------
Q psy11036 106 ----DVCIWDMLGG-GKLLHKFT--CHHKTVTSLCLASGGKRLISASL-----DHHAKIYEMT-LKTVSSF--------- 163 (239)
Q Consensus 106 ----~i~~~d~~~~-~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~-----d~~i~i~d~~-~~~~~~~--------- 163 (239)
.|.+||+. + ++...... .|...+..++| |||++|++++. +..|++||+. ++....+
T Consensus 260 ~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 260 NVQVKLGVISPA-EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP 337 (741)
T ss_dssp CCEEEEEEECSS-TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred CCeeEEEEEECC-CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence 68888987 4 44433322 46778999999 99999987764 5789999987 3322111
Q ss_pred -------e----------cceeEEEEEccCCCEEEEEEecccCcEEEE-EEccCCCeEE-EEcCCc--eEEEEEccC-Ce
Q psy11036 164 -------T----------GGLDVCIWDMLGGGKLLHKFTCHHKTVTSL-CLASGGKRLI-SASLDH--HAKIYEMVN-FS 221 (239)
Q Consensus 164 -------~----------~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~-~~s~~~~~l~-s~s~d~--~i~iwd~~~-~~ 221 (239)
. .++...+|.+...+. ...+..|...+..+ .|+|+++.|+ +++.++ .++||++.. ++
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 0 111234444432233 56667777888887 5999998775 555555 899999864 66
Q ss_pred eeEEecCCCCeeeeEecC
Q psy11036 222 PVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 222 ~~~~~~~~~~v~~~~~sp 239 (239)
.+..+.....+.+++|||
T Consensus 417 ~~~~l~~~~~~~~~~~sp 434 (741)
T 2ecf_A 417 QPQRLSKAPGMHSASFAR 434 (741)
T ss_dssp CCEECCCSCSEEEEEECT
T ss_pred CeeecccCCCceEEEECC
Confidence 666776667788999987
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=157.88 Aligned_cols=228 Identities=11% Similarity=-0.007 Sum_probs=148.0
Q ss_pred CCCEEEEeeCCCccee-eeeeCCceeec---cceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 6 PILIVALWDIPSEAQV-STFTNHTTIYK---VPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
.++ | +||+.+++.+ ..+..+..... .+..........|.+++|+| + ..++.+ .++.+++||+.+++.....
T Consensus 43 ~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp-d-~~~~~~-~~~~i~~~d~~~~~~~~l~ 117 (706)
T 2z3z_A 43 GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAG-R-GLVVLF-TQGGLVGFDMLARKVTYLF 117 (706)
T ss_dssp TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETT-T-TEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECC-C-CeEEEE-ECCEEEEEECCCCceEEcc
Confidence 355 8 9999998873 44433320000 00000000013599999999 5 555444 4599999999988766555
Q ss_pred cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCC-----CeEEEEEeccCCc--------------eEEEEEcCCCCEEE
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGG-----GKLLHKFTCHHKT--------------VTSLCLASGGKRLI 142 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~~--------------i~~i~~~~~~~~l~ 142 (239)
.+...+.+++|+|+|+.++.+.++.|.+||+. . ++.......+... +.+++|+|||++|+
T Consensus 118 ~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~-~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la 196 (706)
T 2z3z_A 118 DTNEETASLDFSPVGDRVAYVRNHNLYIARGG-KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLA 196 (706)
T ss_dssp CCTTCCTTCEECTTSSEEEEEETTEEEEEECB-CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEE
T ss_pred CCcccccCCcCCCCCCEEEEEECCeEEEEecC-cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEE
Confidence 67778889999999999999889999999998 4 5544433333332 47899999999999
Q ss_pred EEe---------------------------------cCCeEEEEEcc-cceEee------------e------------e
Q psy11036 143 SAS---------------------------------LDHHAKIYEMT-LKTVSS------------F------------T 164 (239)
Q Consensus 143 ~~~---------------------------------~d~~i~i~d~~-~~~~~~------------~------------~ 164 (239)
+++ .+..|++||+. ++.... + .
T Consensus 197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 276 (706)
T 2z3z_A 197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAE 276 (706)
T ss_dssp EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEE
Confidence 987 44789999987 321111 1 0
Q ss_pred cc-----eeEEEEEccCCCEEEEEEec-ccC---cEEEEEEcc--CCCeEEEEcCCceEEEEEcc-CCeeeEEec-CCCC
Q psy11036 165 GG-----LDVCIWDMLGGGKLLHKFTC-HHK---TVTSLCLAS--GGKRLISASLDHHAKIYEMV-NFSPVHTLD-YPSP 231 (239)
Q Consensus 165 ~~-----~~i~~~d~~~~~~~~~~~~~-h~~---~v~~~~~s~--~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~-~~~~ 231 (239)
.+ ..+.+||+.+.......... +.. .+..++|+| ||+++++++.|+.++||++. +++.+..+. +...
T Consensus 277 ~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~ 356 (706)
T 2z3z_A 277 VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWE 356 (706)
T ss_dssp ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSC
T ss_pred eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeE
Confidence 01 25888998774233332222 222 235789999 99999999999999999886 667777776 4556
Q ss_pred eee-eEecC
Q psy11036 232 VLS-IDVSM 239 (239)
Q Consensus 232 v~~-~~~sp 239 (239)
+.+ ++|+|
T Consensus 357 v~~~~~~sp 365 (706)
T 2z3z_A 357 VTNFAGFDP 365 (706)
T ss_dssp EEEEEEECT
T ss_pred EEeeeEEcC
Confidence 766 78876
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-20 Score=152.78 Aligned_cols=187 Identities=11% Similarity=0.068 Sum_probs=131.9
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC---CCeEEEEeCCC---CCceee
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY---DKTVNVYDTRS---PDPVMS 80 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~v~vw~~~~---~~~~~~ 80 (239)
+|+++||++++++..+....+. ..+..++|+| + +++++++. +...++|.+.. +... .
T Consensus 43 ~g~~~lw~~~~g~~~~lt~~~~--------------~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~ 105 (582)
T 3o4h_A 43 EGSVNAYLYDGGETVKLNREPI--------------NSVLDPHYGV-G-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-R 105 (582)
T ss_dssp TTEEEEEEEETTEEEECCSSCC--------------SEECEECTTC-S-EEEEEEECSTTSCCEEEEEEETTSTTCCE-E
T ss_pred CCceeEEEEcCCCcEeeecccc--------------cccccccCCC-C-eEEEEeccCCCCcceEEEEEeccCCCccc-c
Confidence 7999999997666554444443 4789999999 5 67776664 45556655433 3222 4
Q ss_pred ecCCCCEEEEEEecCCcE--EEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecC----CeEEEEE
Q psy11036 81 VNHGSPVESVLCLPSGGI--FVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD----HHAKIYE 154 (239)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~--l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~i~d 154 (239)
+.....+...+|+|+++. ++++.++.+.+||+. +++...... +.. .+++|+|||++|++++.+ +.|++||
T Consensus 106 l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~-~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d 181 (582)
T 3o4h_A 106 LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALD-GGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSN 181 (582)
T ss_dssp CTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEE-TTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred ccCCCCceeeeeCCCCCeEEEEecCCCCceEEEcc-CCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEc
Confidence 433334556788888763 444446667799998 665544443 333 789999999999988877 6677777
Q ss_pred cccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc--eEEEEEccCCeeeEEec-CCCC
Q psy11036 155 MTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH--HAKIYEMVNFSPVHTLD-YPSP 231 (239)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~-~~~~ 231 (239)
+. + ++ ...+..|...+..++|||||++|+++..++ .|++||+.+++.. .+. +...
T Consensus 182 ~~-------------------~-g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~ 239 (582)
T 3o4h_A 182 LS-------------------S-GG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKD 239 (582)
T ss_dssp TT-------------------T-CC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSH
T ss_pred CC-------------------C-CC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcC
Confidence 66 1 22 234567888899999999999999888888 8999999998887 444 5556
Q ss_pred eeeeE
Q psy11036 232 VLSID 236 (239)
Q Consensus 232 v~~~~ 236 (239)
+.+++
T Consensus 240 ~~~~~ 244 (582)
T 3o4h_A 240 FSSYR 244 (582)
T ss_dssp HHHHC
T ss_pred hhhhh
Confidence 77777
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-18 Score=134.90 Aligned_cols=215 Identities=10% Similarity=0.082 Sum_probs=136.5
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEE-EEeeCCCeEEEEeCCCCCc------
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIV-ISGSYDKTVNVYDTRSPDP------ 77 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~~~------ 77 (239)
..++.|.+|++.....+..+.......+............+.+++|+| +++++ ++...++.|.+|++.....
T Consensus 117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~ 195 (361)
T 3scy_A 117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEK 195 (361)
T ss_dssp TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCC
T ss_pred CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccc
Confidence 457899999987544332221100000000000001113468899999 67755 4445588999998875431
Q ss_pred --------eeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeE--EEEEe---ccCCceEEEEEcCCCCEEE
Q psy11036 78 --------VMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKL--LHKFT---CHHKTVTSLCLASGGKRLI 142 (239)
Q Consensus 78 --------~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~--~~~~~---~~~~~i~~i~~~~~~~~l~ 142 (239)
.........+..++|+|+|++++++. ++.|.+|++. .++. +..+. .+......++|+|+|++|+
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~-~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~ 274 (361)
T 3scy_A 196 FLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA-DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLY 274 (361)
T ss_dssp CEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE-TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEE
T ss_pred eeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec-CCceEEeEEEecCCCCCCCcccEEECCCCCEEE
Confidence 11224566788999999999887766 6899999998 5543 23332 2234567999999999987
Q ss_pred EEecC--CeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEc-CCceEEEEEc--
Q psy11036 143 SASLD--HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEM-- 217 (239)
Q Consensus 143 ~~~~d--~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~d~~i~iwd~-- 217 (239)
++..+ +.|.+|+++.. ......+..+.. ...+..++|+|+|++|++++ .++.|.+|++
T Consensus 275 v~~~~~~~~i~v~~~~~~----------------~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 275 ASNRLKADGVAIFKVDET----------------NGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EEECSSSCEEEEEEECTT----------------TCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred EECCCCCCEEEEEEEcCC----------------CCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 76665 88999988500 001122333333 45677899999999888776 6789999654
Q ss_pred cCCeeeEEec--CCCCeeeeEec
Q psy11036 218 VNFSPVHTLD--YPSPVLSIDVS 238 (239)
Q Consensus 218 ~~~~~~~~~~--~~~~v~~~~~s 238 (239)
.+++...... .-..+.+++|.
T Consensus 338 ~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 338 ATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCcEeecceeeeCCCCeEEEEc
Confidence 5677655432 33478888886
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=136.19 Aligned_cols=179 Identities=12% Similarity=0.030 Sum_probs=133.6
Q ss_pred EeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCC-CeEEEEEecc-CCceEEEEEcCC
Q psy11036 60 SGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGG-GKLLHKFTCH-HKTVTSLCLASG 137 (239)
Q Consensus 60 s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~-~~~~~~~~~~-~~~i~~i~~~~~ 137 (239)
.++.|++|++||+.+++......+...+.+++|+|++++++++.++.|.+||+. . ++.......+ ...+.+++|+|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLA-GDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESS-SCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCC-CCCCceEeccccccccccceEECCC
Confidence 456789999999998887766678899999999999999999989999999998 5 5655555555 367899999999
Q ss_pred CCEEEEEe--cCCeEEEEEcc--cceEeee----------------------ecceeEEEEEccCCCEEEEEEecccCcE
Q psy11036 138 GKRLISAS--LDHHAKIYEMT--LKTVSSF----------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTV 191 (239)
Q Consensus 138 ~~~l~~~~--~d~~i~i~d~~--~~~~~~~----------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v 191 (239)
+++|++++ .++...||.++ ......+ ..+..+.+|++.........+..|...+
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 175 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRN 175 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCE
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCcc
Confidence 99999998 34555665553 2211111 1223356777644334445566778889
Q ss_pred EEEEEccCCCeEEEEc-CCceEEEEEcc-CCeeeEEec-CCCCeeeeEecC
Q psy11036 192 TSLCLASGGKRLISAS-LDHHAKIYEMV-NFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 192 ~~~~~s~~~~~l~s~s-~d~~i~iwd~~-~~~~~~~~~-~~~~v~~~~~sp 239 (239)
.+++|+|++++|+.++ .++.+++|++. .+..+..+. +...+.+++|+|
T Consensus 176 ~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~ 226 (297)
T 2ojh_A 176 DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP 226 (297)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT
T ss_pred ccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC
Confidence 9999999999887665 58999999986 455556665 566788899987
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-17 Score=127.88 Aligned_cols=195 Identities=12% Similarity=0.137 Sum_probs=128.4
Q ss_pred CCCEEEEeeCCC-cc--eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCC-CCCcee--
Q psy11036 6 PILIVALWDIPS-EA--QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTR-SPDPVM-- 79 (239)
Q Consensus 6 ~dg~i~vwd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~-- 79 (239)
.++.|.+|++.. +. .+..+..... .|. .......+.+++|+| +++++++...++.|.+|++. +++...
T Consensus 106 ~~~~v~v~~~~~~g~~~~~~~~~~~~~---~p~--~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~ 179 (347)
T 3hfq_A 106 HKGTAEVMKIAADGALTLTDTVQHSGH---GPR--PEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQS 179 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCCC---CSS--TTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred CCCEEEEEEeCCCCCeeecceeecCCC---CCC--ccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEee
Confidence 468999999963 32 2333322110 000 000113588999999 66677777778999999998 454322
Q ss_pred ee--cCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccC-CCeE--EEEEeccC------CceEEEEEcCCCCEEE-EEe
Q psy11036 80 SV--NHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLG-GGKL--LHKFTCHH------KTVTSLCLASGGKRLI-SAS 145 (239)
Q Consensus 80 ~~--~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~-~~~~--~~~~~~~~------~~i~~i~~~~~~~~l~-~~~ 145 (239)
.+ .....+..++|+|+|+++++++ ++.+.+|++.. .++. ...+.... ..+..++|+|+|++|+ +..
T Consensus 180 ~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~ 259 (347)
T 3hfq_A 180 VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR 259 (347)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence 11 2344678899999999777654 68999999873 2332 22333222 3488899999999774 555
Q ss_pred cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC-CceEEEE--EccCCee
Q psy11036 146 LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL-DHHAKIY--EMVNFSP 222 (239)
Q Consensus 146 ~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-d~~i~iw--d~~~~~~ 222 (239)
.++.|.+|++... ...+.+..+..+...+..++|+|||++|++++. ++.|.+| |..+++.
T Consensus 260 ~~~~v~v~~~~~~-----------------g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 260 GYNTLAVFAVTAD-----------------GHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp TTTEEEEEEECGG-----------------GCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred CCCEEEEEEECCC-----------------CcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 6899999998610 012334444555666889999999998887765 5899999 5556765
Q ss_pred e
Q psy11036 223 V 223 (239)
Q Consensus 223 ~ 223 (239)
.
T Consensus 323 ~ 323 (347)
T 3hfq_A 323 S 323 (347)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-17 Score=127.66 Aligned_cols=212 Identities=9% Similarity=0.075 Sum_probs=152.9
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee----------CCCeEEEEeCCCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS----------YDKTVNVYDTRSP 75 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~v~vw~~~~~ 75 (239)
.|+.|++||..+++.+.++..+. .+ .++|+| ++++++++. .++.|.+||..+.
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~--------------~p--~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAF--------------NG--HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCE--------------EE--EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred ccCeEEEEECCCCeEEEEecCCC--------------CC--ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 47899999999999988888775 55 899999 788887765 3678999999998
Q ss_pred Cceeeec-------CCCCEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeEEEE-Eecc-------------------
Q psy11036 76 DPVMSVN-------HGSPVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKLLHK-FTCH------------------- 125 (239)
Q Consensus 76 ~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~~~~-~~~~------------------- 125 (239)
+.+..+. +......++++|+|++++++. ++.|.+||+. ..+.+.. +...
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~-~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA-KGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT-TTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC-CCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence 8887763 124567899999999999875 4789999998 6666665 3210
Q ss_pred -CCceEEEEEc---------------------------CCCCEEEEEecCCeEEEEEcc-cc--eEe-------------
Q psy11036 126 -HKTVTSLCLA---------------------------SGGKRLISASLDHHAKIYEMT-LK--TVS------------- 161 (239)
Q Consensus 126 -~~~i~~i~~~---------------------------~~~~~l~~~~~d~~i~i~d~~-~~--~~~------------- 161 (239)
.+.+..+.+. +++..++..+.++.+.++|+. .. ...
T Consensus 171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~ 250 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN 250 (361)
T ss_dssp TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred CCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence 0111111111 222233344455667777764 10 000
Q ss_pred ---------eee----------c-----------ceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCce
Q psy11036 162 ---------SFT----------G-----------GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHH 211 (239)
Q Consensus 162 ---------~~~----------~-----------~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~ 211 (239)
.+. . ...+.+||..+ .+.+..+..+. +..++|+|||++|++++. +.
T Consensus 251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~ 326 (361)
T 2oiz_A 251 WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GN 326 (361)
T ss_dssp CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTTTEEEEECS-SC
T ss_pred cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCCCEEEEeCC-Ce
Confidence 010 0 23588899877 67788888766 899999999999998887 99
Q ss_pred EEEEEccCC--eeeEEe-cCCCCeeeeEecC
Q psy11036 212 AKIYEMVNF--SPVHTL-DYPSPVLSIDVSM 239 (239)
Q Consensus 212 i~iwd~~~~--~~~~~~-~~~~~v~~~~~sp 239 (239)
|.+||..++ +.+.++ ........++++|
T Consensus 327 v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 327 VNVYDISQPEPKLLRTIEGAAEASLQVQFHP 357 (361)
T ss_dssp EEEEECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred EEEEECCCCcceeeEEeccCCCCcEEEEecC
Confidence 999999999 999997 4777888999887
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-18 Score=145.90 Aligned_cols=204 Identities=10% Similarity=0.051 Sum_probs=144.3
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC---------CeEEEEeCCCCCc
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD---------KTVNVYDTRSPDP 77 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------g~v~vw~~~~~~~ 77 (239)
||.|++||+.+++....+..|.. .........++|+| +++.|+.++.+ +.+.+||+.+++.
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~ 104 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTF---------DEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL 104 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTT---------TTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCcEEEEECCCCceEEEEechhh---------hhhcccccceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcE
Confidence 78999999999998877777751 00001234589999 78888888776 5667999999876
Q ss_pred eeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEE-EeccCCce-----------------EEEEEcCCCC
Q psy11036 78 VMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHK-FTCHHKTV-----------------TSLCLASGGK 139 (239)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~i-----------------~~i~~~~~~~ 139 (239)
.....+...+...+|+|+|+.|+.+.++.|.+|++. .++..+. ..++...+ ..+.|+|||+
T Consensus 105 ~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~ 183 (740)
T 4a5s_A 105 ITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP-NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT 183 (740)
T ss_dssp CCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESST-TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS
T ss_pred EEcccCCCcceeeEECCCCCEEEEEECCeEEEEECC-CCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCC
Confidence 544467788999999999999999999999999997 4443321 12222222 3589999999
Q ss_pred EEEEEecCCe-EEEEEcc--cc------eEeee----ec----ceeEEEEEccC---CCE-EEEEEe------cccCcEE
Q psy11036 140 RLISASLDHH-AKIYEMT--LK------TVSSF----TG----GLDVCIWDMLG---GGK-LLHKFT------CHHKTVT 192 (239)
Q Consensus 140 ~l~~~~~d~~-i~i~d~~--~~------~~~~~----~~----~~~i~~~d~~~---~~~-~~~~~~------~h~~~v~ 192 (239)
.|+..+.|.. +.+|++. .. ....+ .| ...+.+||+.+ ... ....+. +|...+.
T Consensus 184 ~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 263 (740)
T 4a5s_A 184 FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLC 263 (740)
T ss_dssp EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEE
T ss_pred EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEE
Confidence 9998876554 8888875 11 11111 12 23589999987 421 222333 3777899
Q ss_pred EEEEccCCCeEEEEc----CCceEEEEEccCCe
Q psy11036 193 SLCLASGGKRLISAS----LDHHAKIYEMVNFS 221 (239)
Q Consensus 193 ~~~~s~~~~~l~s~s----~d~~i~iwd~~~~~ 221 (239)
.++|+|||+.++... .+..|++||+.+++
T Consensus 264 ~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 264 DVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred EEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 999999999766543 34579999999887
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-18 Score=150.97 Aligned_cols=210 Identities=13% Similarity=0.076 Sum_probs=154.0
Q ss_pred EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC-CCceeeecCCCCE
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS-PDPVMSVNHGSPV 87 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~~~~~~v 87 (239)
...+|....+.....+..|. ..+.++.|++ + .++++++.|+.+++|.+.. +.....+.....+
T Consensus 184 ~~~lw~~~~~~~~~~l~~~~--------------~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~ 247 (1045)
T 1k32_A 184 RGKIWIEVNSGAFKKIVDMS--------------THVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDY 247 (1045)
T ss_dssp CCEEEEEEETTEEEEEECCS--------------SCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSS
T ss_pred cCCEEEECCCCCeEECcCCC--------------CcccceEEeC-C-EEEEEEeccCceEEEEEeCCCCcceEecCCCCc
Confidence 34444332224445567777 8999999998 4 6777888889999998653 3344444333356
Q ss_pred EEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEec-----------cCCceEEEEEc-CCCCEEEEEecCCeEEEEEc
Q psy11036 88 ESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTC-----------HHKTVTSLCLA-SGGKRLISASLDHHAKIYEM 155 (239)
Q Consensus 88 ~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~-----------~~~~i~~i~~~-~~~~~l~~~~~d~~i~i~d~ 155 (239)
...+|+|+|+.++.+.++.|.+|++. ..+ +..+.. |...+..++|+ |+|+.|++++ ++.+.+|++
T Consensus 248 ~~~~~SpDG~~la~~~~~~i~~~d~~-~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 248 YPRHLNTDGRRILFSKGGSIYIFNPD-TEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp CEEEEEESSSCEEEEETTEEEEECTT-TCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred ceeeEcCCCCEEEEEeCCEEEEecCC-ceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 67799999999998889999999984 433 334443 34478999999 9999999887 889999998
Q ss_pred ccceEeee-------------e---------cceeEE-EEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceE
Q psy11036 156 TLKTVSSF-------------T---------GGLDVC-IWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 212 (239)
Q Consensus 156 ~~~~~~~~-------------~---------~~~~i~-~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i 212 (239)
.......+ . ....+. +||..+.. . ..+.+|...+..++|+|||++|++++.++.|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~-~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v 402 (1045)
T 1k32_A 325 SGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-A-EKFEENLGNVFAMGVDRNGKFAVVANDRFEI 402 (1045)
T ss_dssp TSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-E-EECCCCCCSEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCceEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCC-c-eEecCCccceeeeEECCCCCEEEEECCCCeE
Confidence 72211111 1 122456 77876532 2 2334777889999999999999999999999
Q ss_pred EEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 213 KIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 213 ~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
++||+.+++....+. +...+.+++|||
T Consensus 403 ~~~d~~tg~~~~~~~~~~~~v~~~~~Sp 430 (1045)
T 1k32_A 403 MTVDLETGKPTVIERSREAMITDFTISD 430 (1045)
T ss_dssp EEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred EEEECCCCceEEeccCCCCCccceEECC
Confidence 999999999887774 778899999997
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-17 Score=124.87 Aligned_cols=201 Identities=9% Similarity=0.061 Sum_probs=130.7
Q ss_pred CCEEEEeeCCC--cce--eeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee-CCCeEEEEeCCCCCceeee
Q psy11036 7 ILIVALWDIPS--EAQ--VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS-YDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 7 dg~i~vwd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~vw~~~~~~~~~~~ 81 (239)
++.|.+|+++. ++. +.....+. .....+++ ++++|++++ .++.+.+|++.....+..+
T Consensus 74 ~~~v~~~~~~~~~g~~~~~~~~~~~~--------------~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~ 136 (361)
T 3scy_A 74 QAAVSAFAFDKEKGTLHLLNTQKTMG--------------ADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPA 136 (361)
T ss_dssp TCEEEEEEEETTTTEEEEEEEEECSS--------------SCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSC
T ss_pred CCcEEEEEEeCCCCcEEEeeEeccCC--------------CCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCccc
Confidence 47999998765 432 33333343 55667777 355555544 6889999999754332211
Q ss_pred ----c-----------CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCe------E------EEEEeccCCceEEE
Q psy11036 82 ----N-----------HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGK------L------LHKFTCHHKTVTSL 132 (239)
Q Consensus 82 ----~-----------~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~------~------~~~~~~~~~~i~~i 132 (239)
. +...+.+++|+|+|++++++. ++.|.+|++..... . ......+......+
T Consensus 137 ~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 216 (361)
T 3scy_A 137 SDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHL 216 (361)
T ss_dssp SEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEE
T ss_pred ceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEE
Confidence 1 123458899999999776665 68999999874332 1 11222344567899
Q ss_pred EEcCCCCEEEEEe-cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC--C
Q psy11036 133 CLASGGKRLISAS-LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL--D 209 (239)
Q Consensus 133 ~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~--d 209 (239)
+|+|+|+++++++ .++.|.+|+++...+..+ ..+.....+......++|+|||++|+++.. +
T Consensus 217 ~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~---------------~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~ 281 (361)
T 3scy_A 217 IFNSDGKFAYLINEIGGTVIAFRYADGMLDEI---------------QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA 281 (361)
T ss_dssp EECTTSSEEEEEETTTCEEEEEEEETTEEEEE---------------EEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred EEcCCCCEEEEEcCCCCeEEEEEecCCceEEe---------------EEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence 9999999887777 689999999871111111 000111223345689999999998866654 5
Q ss_pred ceEEEEEcc--CCe--eeEEecCCCCeeeeEecC
Q psy11036 210 HHAKIYEMV--NFS--PVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 210 ~~i~iwd~~--~~~--~~~~~~~~~~v~~~~~sp 239 (239)
+.|.+|++. +++ .+..+.....+.+++|+|
T Consensus 282 ~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~sp 315 (361)
T 3scy_A 282 DGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITP 315 (361)
T ss_dssp CEEEEEEECTTTCCEEEEEEEECSSCCCEEEECT
T ss_pred CEEEEEEEcCCCCcEEEeeEecCCCCCceEEECC
Confidence 899999995 454 455555555788899987
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=143.74 Aligned_cols=166 Identities=11% Similarity=0.081 Sum_probs=121.9
Q ss_pred CeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-C----CcEEEEEccCCCeE
Q psy11036 44 YVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-G----LDVCIWDMLGGGKL 118 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~----~~i~~~d~~~~~~~ 118 (239)
.+...+|+|++...+++.+.++.+.+||+.+++......+.. .+++|+|+|+.+++++ + ..|.+||+. +++.
T Consensus 111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~-~g~~ 187 (582)
T 3o4h_A 111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLS-SGGL 187 (582)
T ss_dssp SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETT-TCCC
T ss_pred CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCC-CCCc
Confidence 355678888444444444445556699999887655544333 7899999999999766 4 569999987 4443
Q ss_pred EEEEeccCCceEEEEEcCCCCEEEEEecCC--eEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEE-
Q psy11036 119 LHKFTCHHKTVTSLCLASGGKRLISASLDH--HAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLC- 195 (239)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~- 195 (239)
..+..|...+..++|+|||+.|+++..++ .|++||+. +++.. .+..|...+..++
T Consensus 188 -~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~--------------------~~~~~-~~~~~~~~~~~~~~ 245 (582)
T 3o4h_A 188 -RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPR--------------------DGSVE-DLELPSKDFSSYRP 245 (582)
T ss_dssp -EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT--------------------TCCEE-ECCCSCSHHHHHCC
T ss_pred -eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCC--------------------CCcEE-EccCCCcChhhhhh
Confidence 46778888999999999999999888888 78888877 22333 4455665565556
Q ss_pred -------EccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCCeeeeEec
Q psy11036 196 -------LASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVS 238 (239)
Q Consensus 196 -------~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s 238 (239)
|+|||.++++++.|+.+++|++ ++.+. ...+.+.+++|+
T Consensus 246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s 291 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW 291 (582)
T ss_dssp SEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE
T ss_pred ccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec
Confidence 9999998999999999999999 66654 233566777664
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=152.04 Aligned_cols=172 Identities=7% Similarity=0.010 Sum_probs=128.4
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCC---CEEEEEEecCCcEEEEeCC----------CcEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGS---PVESVLCLPSGGIFVTGGG----------LDVC 108 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~---~v~~~~~~~~~~~l~~~~~----------~~i~ 108 (239)
..+.+++|+| +++++++ +.||+|++||+.+++....+. +.. .+.+++|+|+|++++++.+ +.+.
T Consensus 17 ~~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 17 IHDPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred ccccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 4467899999 7777765 789999999999998877774 332 4899999999999988862 6788
Q ss_pred EEEccCCCeEEEEEe---ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEe
Q psy11036 109 IWDMLGGGKLLHKFT---CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFT 185 (239)
Q Consensus 109 ~~d~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 185 (239)
+||+. +++. ..+. .|...+..++|+|||+.|+.++. +.|++||+.+ ++......
T Consensus 95 ~~d~~-~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~--------------------g~~~~~~~ 151 (723)
T 1xfd_A 95 LSKIP-HGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG--------------------KQAIRVVS 151 (723)
T ss_dssp EEESS-SCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS--------------------SCCEEEEC
T ss_pred EEECC-CCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC--------------------CceEEEec
Confidence 99998 5544 3333 34445889999999999999876 7899998871 11111112
Q ss_pred cccC------------------cEEEEEEccCCCeEEEEcCCc----------------------------------eEE
Q psy11036 186 CHHK------------------TVTSLCLASGGKRLISASLDH----------------------------------HAK 213 (239)
Q Consensus 186 ~h~~------------------~v~~~~~s~~~~~l~s~s~d~----------------------------------~i~ 213 (239)
.+.. .+.+++|||||++|++++.|+ .|+
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~ 231 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLH 231 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEE
T ss_pred CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEE
Confidence 2121 237899999999999887543 899
Q ss_pred EEEccCCeeeEEecC-------CCCeeeeEecC
Q psy11036 214 IYEMVNFSPVHTLDY-------PSPVLSIDVSM 239 (239)
Q Consensus 214 iwd~~~~~~~~~~~~-------~~~v~~~~~sp 239 (239)
+||+.+++....+.. ...+.+++|||
T Consensus 232 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp 264 (723)
T 1xfd_A 232 VIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT 264 (723)
T ss_dssp EEESSSSCCCEECCCCCCGGGSSEEEEEEEESS
T ss_pred EEECCCCceeEEeeCCccCCCccceeEEEEEeC
Confidence 999999886566652 45788999987
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-16 Score=122.34 Aligned_cols=198 Identities=13% Similarity=0.124 Sum_probs=133.2
Q ss_pred CCCEEEEeeCC-CcceeeeeeC----CceeeccceeeccCCCCCeEEEEEecCCCCEEEEee-CCCeEEEEeCC-CCCce
Q psy11036 6 PILIVALWDIP-SEAQVSTFTN----HTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS-YDKTVNVYDTR-SPDPV 78 (239)
Q Consensus 6 ~dg~i~vwd~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~vw~~~-~~~~~ 78 (239)
.+|.+.+|+++ +++....+.. +. ..+.+++|+| ++++++++. .++.|++|++. +++..
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~--------------~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~ 181 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQEN--------------TGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVE 181 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTT--------------CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCC--------------CcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEE
Confidence 47889999987 4655444432 33 6789999999 777777655 46799999998 67643
Q ss_pred --eeec---CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccC-CCeEE---EEEec-------cCC------ceEEEE-
Q psy11036 79 --MSVN---HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLG-GGKLL---HKFTC-------HHK------TVTSLC- 133 (239)
Q Consensus 79 --~~~~---~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~-~~~~~---~~~~~-------~~~------~i~~i~- 133 (239)
..+. +...+..++|+|+|++++++. ++.|.+|+++. +++.. ..+.. |.. .+..++
T Consensus 182 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 182 LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence 2232 356799999999999888776 58899998752 23332 22221 122 478999
Q ss_pred EcCCCCEEEEEecCC------eEEEEEcccceEeeeecceeEEEEEccCCCEEEE---EEecccCcEEEEEEcc---CCC
Q psy11036 134 LASGGKRLISASLDH------HAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLH---KFTCHHKTVTSLCLAS---GGK 201 (239)
Q Consensus 134 ~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~~h~~~v~~~~~s~---~~~ 201 (239)
|+|||++|+++..+. .|.+|+++ ..++... ....+...+..++|+| ||+
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~ 322 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLR-------------------DCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEEC-------------------TTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEEC-------------------CCCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence 999999888776533 78888875 0122211 1233444566789999 899
Q ss_pred eEEEEcC-CceEEEEEccCCee--eEEecCCCC--eeeeEe
Q psy11036 202 RLISASL-DHHAKIYEMVNFSP--VHTLDYPSP--VLSIDV 237 (239)
Q Consensus 202 ~l~s~s~-d~~i~iwd~~~~~~--~~~~~~~~~--v~~~~~ 237 (239)
+|++++. ++.|.+|++..... +..+..+.+ +..+.|
T Consensus 323 ~l~v~~~~~~~v~v~~~~~~~l~~~~~~~~~~p~~~~~~~~ 363 (365)
T 1jof_A 323 WMAITDDQEGWLEIYRWKDEFLHRVARVRIPEPGFGMNAIW 363 (365)
T ss_dssp EEEEECSSSCEEEEEEEETTEEEEEEEEECCSTTEEEEEEE
T ss_pred EEEEEEcCCCeEEEEEEchhhCceeeEEEcCCCcceeeeEe
Confidence 9998876 48999999876532 234444444 455554
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-17 Score=127.74 Aligned_cols=214 Identities=9% Similarity=-0.018 Sum_probs=142.8
Q ss_pred EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCCCE
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPV 87 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~v 87 (239)
.|++||+.+++.......+. ..+..++|+| +++.|+.++.++.|++||+.+++...... +...+
T Consensus 61 ~l~~~d~~~g~~~~lt~~~~--------------~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~ 125 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLTEGRG--------------DNTFGGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWV 125 (388)
T ss_dssp EEEEEETTTCEEEECCCSSC--------------BCSSSCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEE
T ss_pred eEEEEeCCCCceEEeeeCCC--------------CCccceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcc
Confidence 58999999988877766665 4555678999 88999999999999999999988766553 33334
Q ss_pred EEE--EEecCCcEEEEe----------------------C-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-CCCEE
Q psy11036 88 ESV--LCLPSGGIFVTG----------------------G-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRL 141 (239)
Q Consensus 88 ~~~--~~~~~~~~l~~~----------------------~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l 141 (239)
... .++|+++.++.. . +..|.+||+. +++ ...+..+...+..++|+| +|+.|
T Consensus 126 ~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~g~-~~~l~~~~~~~~~~~~sp~dg~~l 203 (388)
T 3pe7_A 126 GYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK-TGE-STVILQENQWLGHPIYRPYDDSTV 203 (388)
T ss_dssp EEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT-TCC-EEEEEEESSCEEEEEEETTEEEEE
T ss_pred cccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC-CCc-eEEeecCCccccccEECCCCCCEE
Confidence 333 348899988742 1 3678999997 554 344555677889999999 99998
Q ss_pred EEEecC------CeEEEEEcccceEee--------------e-------------ecce--eEEEEEccCCCE-EEEEEe
Q psy11036 142 ISASLD------HHAKIYEMTLKTVSS--------------F-------------TGGL--DVCIWDMLGGGK-LLHKFT 185 (239)
Q Consensus 142 ~~~~~d------~~i~i~d~~~~~~~~--------------~-------------~~~~--~i~~~d~~~~~~-~~~~~~ 185 (239)
+....+ ..|.++|..+..... + .+.. .+.+||+.+... .+..+.
T Consensus 204 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 283 (388)
T 3pe7_A 204 AFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP 283 (388)
T ss_dssp EEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC
T ss_pred EEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC
Confidence 887764 377777765221111 1 1111 288888876432 223333
Q ss_pred cccCc---EEEEEEccCCCeEEEE---------cCCceEEEEEccCCeeeEEecCCC-----------CeeeeEecC
Q psy11036 186 CHHKT---VTSLCLASGGKRLISA---------SLDHHAKIYEMVNFSPVHTLDYPS-----------PVLSIDVSM 239 (239)
Q Consensus 186 ~h~~~---v~~~~~s~~~~~l~s~---------s~d~~i~iwd~~~~~~~~~~~~~~-----------~v~~~~~sp 239 (239)
++... ...+.|+|||+.|+.. ..+..|++||+.+++......+.. .+.+++|+|
T Consensus 284 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sp 360 (388)
T 3pe7_A 284 ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTP 360 (388)
T ss_dssp CEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECT
T ss_pred CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCC
Confidence 21111 1113699999988754 456789999999887644444544 477888886
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.2e-17 Score=125.51 Aligned_cols=202 Identities=11% Similarity=0.087 Sum_probs=130.8
Q ss_pred EEEEeeCC-CcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCC--EEEEee-------------CCCeEEEEeC
Q psy11036 9 IVALWDIP-SEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSD--IVISGS-------------YDKTVNVYDT 72 (239)
Q Consensus 9 ~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~-------------~dg~v~vw~~ 72 (239)
.|.+|++. +++......... . +.+..++|+| +++ +++++. .++++.+|++
T Consensus 61 ~v~~~~~~~~g~~~~~~~~~~------------~-g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~ 126 (365)
T 1jof_A 61 KWSSFAVKSPTEIVHEASHPI------------G-GHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSV 126 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEC------------C-SSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEE
T ss_pred eEEEEEECCCCCEEEeeEeec------------C-CCCccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEcc
Confidence 78999986 676543322110 0 2244588999 677 345553 6899999999
Q ss_pred C-CCCceeeec-----CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeE--EEEEe--ccCCceEEEEEcCCCCE
Q psy11036 73 R-SPDPVMSVN-----HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKL--LHKFT--CHHKTVTSLCLASGGKR 140 (239)
Q Consensus 73 ~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~--~~~~~--~~~~~i~~i~~~~~~~~ 140 (239)
. +++....+. +...+.+++|+|+|++++++. ++.|.+|++...++. +..+. .|...+..++|+|+|++
T Consensus 127 ~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~ 206 (365)
T 1jof_A 127 SETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY 206 (365)
T ss_dssp CTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE
T ss_pred CCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCE
Confidence 7 455443332 456799999999999888765 578999999622332 23333 23567899999999999
Q ss_pred EEEEec-CCeEEEEEcc---cceEeeeecceeEEEEEccCCCEEEEEE----ecccC------cEEEEE-EccCCCeEEE
Q psy11036 141 LISASL-DHHAKIYEMT---LKTVSSFTGGLDVCIWDMLGGGKLLHKF----TCHHK------TVTSLC-LASGGKRLIS 205 (239)
Q Consensus 141 l~~~~~-d~~i~i~d~~---~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~h~~------~v~~~~-~s~~~~~l~s 205 (239)
+++++. ++.|.+|+++ ++..... +.+..+ .+|.. .+..++ |+|||++|++
T Consensus 207 l~v~~~~~~~v~v~~~~~~~g~~~~~~---------------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v 271 (365)
T 1jof_A 207 LYALMEAGNRICEYVIDPATHMPVYTH---------------HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEEEEE---------------EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred EEEEECCCCeEEEEEEeCCCCcEEEcc---------------ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence 888775 6899999875 1110000 000001 12222 588999 9999999877
Q ss_pred EcCC-c-----eEEEEEcc-CCeeeE---Eec-CCCCeeeeEecC
Q psy11036 206 ASLD-H-----HAKIYEMV-NFSPVH---TLD-YPSPVLSIDVSM 239 (239)
Q Consensus 206 ~s~d-~-----~i~iwd~~-~~~~~~---~~~-~~~~v~~~~~sp 239 (239)
++.+ . .|.+|++. +++... .+. ....+..++|+|
T Consensus 272 ~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp 316 (365)
T 1jof_A 272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP 316 (365)
T ss_dssp EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred ECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence 6543 2 89999996 666543 233 344566777765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-15 Score=112.96 Aligned_cols=201 Identities=16% Similarity=0.194 Sum_probs=141.4
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC-CCeEEEEeCCCCCceeeec-
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY-DKTVNVYDTRSPDPVMSVN- 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~v~vw~~~~~~~~~~~~- 82 (239)
..++.|++||.+ ++.+..+..... ...+...+.++++.+.+++++++... ++.|++|| .+++.+..+.
T Consensus 48 ~~~~~i~~~d~~-g~~~~~~~~~~~--------~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~ 117 (286)
T 1q7f_A 48 TNNHRIQIFDKE-GRFKFQFGECGK--------RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGA 117 (286)
T ss_dssp GGGTEEEEECTT-SCEEEEECCBSS--------STTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECT
T ss_pred CCCCEEEEECCC-CcEEEEecccCC--------CcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecC
Confidence 346788999876 555555532110 00011568899995326666666543 78999999 5677666663
Q ss_pred -CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEe--ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccc
Q psy11036 83 -HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFT--CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLK 158 (239)
Q Consensus 83 -~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~ 158 (239)
....+..++++|+++++++.. ++.|.+||.. ++.+..+. .+...+..++++++|+.+++...++.|++||..++
T Consensus 118 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~ 195 (286)
T 1q7f_A 118 TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ 195 (286)
T ss_dssp TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC
T ss_pred ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC
Confidence 345789999999999877766 6889999964 55555554 34456899999999998888778899999997733
Q ss_pred eEeeeecceeEEEEEccCCCEEEEEEec--ccCcEEEEEEccCCCeEEEEcCCc-eEEEEEccCCeeeEEecC---CCCe
Q psy11036 159 TVSSFTGGLDVCIWDMLGGGKLLHKFTC--HHKTVTSLCLASGGKRLISASLDH-HAKIYEMVNFSPVHTLDY---PSPV 232 (239)
Q Consensus 159 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~---~~~v 232 (239)
. +..+.. +...+..++++++|+++++...++ .|.+||. +++.+..+.. ...+
T Consensus 196 ~---------------------~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 253 (286)
T 1q7f_A 196 Y---------------------LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQC 253 (286)
T ss_dssp E---------------------EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCE
T ss_pred E---------------------EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcc
Confidence 2 222222 235688999999999988888886 9999995 5677776652 2246
Q ss_pred eeeEecC
Q psy11036 233 LSIDVSM 239 (239)
Q Consensus 233 ~~~~~sp 239 (239)
.+++++|
T Consensus 254 ~~i~~~~ 260 (286)
T 1q7f_A 254 FDVALMD 260 (286)
T ss_dssp EEEEEET
T ss_pred eeEEECC
Confidence 7888875
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-15 Score=111.27 Aligned_cols=176 Identities=16% Similarity=0.243 Sum_probs=129.7
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec---C
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN---H 83 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~---~ 83 (239)
++.|++|| .+++.+..+.... ...+.+++++| +++++++...++.|.+|+.. ++....+. +
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~~~-------------~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~ 162 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGATI-------------LQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKH 162 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECTTT-------------CSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTT
T ss_pred CCEEEEEC-CCCcEEEEecCcc-------------CCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCc
Confidence 57788888 4666666554321 05688999999 77888887788999999964 55555552 3
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEecc--CCceEEEEEcCCCCEEEEEecCC-eEEEEEcccce
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCH--HKTVTSLCLASGGKRLISASLDH-HAKIYEMTLKT 159 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~-~i~i~d~~~~~ 159 (239)
...+..++++|+++++++.. ++.|.+||.. ++.+..+..+ ...+..++++++|+++++...++ .|.+||..++
T Consensus 163 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~- 239 (286)
T 1q7f_A 163 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ- 239 (286)
T ss_dssp CSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-
T ss_pred cCCcEEEEECCCCCEEEEECCCCEEEEEcCC--CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-
Confidence 45689999999998777766 6899999984 5556666543 35789999999999888887776 9999986633
Q ss_pred EeeeecceeEEEEEccCCCEEEEEEeccc--CcEEEEEEccCCCeEEEEcCCceEEEEEccCCee
Q psy11036 160 VSSFTGGLDVCIWDMLGGGKLLHKFTCHH--KTVTSLCLASGGKRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 160 ~~~~~~~~~i~~~d~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
.+..+..+. ..+.+++++|+|+++++ +.|+.|++|++....+
T Consensus 240 --------------------~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 240 --------------------LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp --------------------EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred --------------------EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 233333322 34778999999987777 5699999999866543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=141.01 Aligned_cols=177 Identities=7% Similarity=-0.003 Sum_probs=118.8
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee--cCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--NHG 84 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--~~~ 84 (239)
++.|++||+++++.+..... . ..+..++|+| +++.|+.+. ++.|++|++.+++..... ++.
T Consensus 89 ~~~i~~~d~~~g~~~~~~~l-~--------------~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 89 TATYYIYDLSNGEFVRGNEL-P--------------RPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEEEEEETTTTEECCSSCC-C--------------SSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred ceEEEEEECCCCccccceec-C--------------cccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 58999999998876311111 2 4578899999 788888775 789999999988765433 222
Q ss_pred CCE-----------------EEEEEecCCcEEEEeC-C-C---------------------------------cEEEEEc
Q psy11036 85 SPV-----------------ESVLCLPSGGIFVTGG-G-L---------------------------------DVCIWDM 112 (239)
Q Consensus 85 ~~v-----------------~~~~~~~~~~~l~~~~-~-~---------------------------------~i~~~d~ 112 (239)
..+ .+++|+|+|+.|+.++ + + .|.+||+
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~ 231 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT 231 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence 222 4899999999999876 3 1 6789998
Q ss_pred cCCCeEE---E-----EEeccCCceEEEEEcCCCCEEEEEecC----CeEEEEE----cccceEeeeecceeEEEEEccC
Q psy11036 113 LGGGKLL---H-----KFTCHHKTVTSLCLASGGKRLISASLD----HHAKIYE----MTLKTVSSFTGGLDVCIWDMLG 176 (239)
Q Consensus 113 ~~~~~~~---~-----~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~i~d----~~~~~~~~~~~~~~i~~~d~~~ 176 (239)
. .++.. . .+..|...+..++|+||++.+++.... ..|.+|| +.
T Consensus 232 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~-------------------- 290 (719)
T 1z68_A 232 T-YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ-------------------- 290 (719)
T ss_dssp S-CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS--------------------
T ss_pred C-CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC--------------------
Confidence 7 44321 1 123577789999999998777664432 2366667 44
Q ss_pred CCEEEEEE----ecccCcEE-----EEEEccCCCeEEE--EcCCc--eEEEEEccCCe
Q psy11036 177 GGKLLHKF----TCHHKTVT-----SLCLASGGKRLIS--ASLDH--HAKIYEMVNFS 221 (239)
Q Consensus 177 ~~~~~~~~----~~h~~~v~-----~~~~s~~~~~l~s--~s~d~--~i~iwd~~~~~ 221 (239)
+++....+ ..|...+. .+.|+|||+.|+. +..+| .|.+||+.+++
T Consensus 291 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 291 TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 12211111 34556565 7899999996554 44555 57777877665
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.9e-15 Score=113.15 Aligned_cols=197 Identities=12% Similarity=0.134 Sum_probs=143.5
Q ss_pred CCEEEEeeCCCcceeeeeeC-CceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-ceeeec--
Q psy11036 7 ILIVALWDIPSEAQVSTFTN-HTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD-PVMSVN-- 82 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-~~~~~~-- 82 (239)
++.|.+||..+++.+..+.. +. .....++++| +++++++...++.|++|+..... .+..+.
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~~~~--------------~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~ 132 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGKNLF--------------YLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRS 132 (329)
T ss_dssp SCCEEEECTTTCCEEEEECTTTC--------------SSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBT
T ss_pred CCcEEEEECCCCeEEeccCCCcc--------------CCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEeccc
Confidence 36799999988887766542 32 5788999999 78888888889999999986442 444442
Q ss_pred --------CCCCEEEEEEec-CCcEEEEeC--CCcEEEEEccCCCeEEEEEecc----------CCceEEEEEcCC-CCE
Q psy11036 83 --------HGSPVESVLCLP-SGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCH----------HKTVTSLCLASG-GKR 140 (239)
Q Consensus 83 --------~~~~v~~~~~~~-~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~----------~~~i~~i~~~~~-~~~ 140 (239)
+-.....++++| ++.++++.+ ++.|.+|+. .+..+..+... ......++++|+ +..
T Consensus 133 ~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~--~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l 210 (329)
T 3fvz_A 133 MQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP--SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQL 210 (329)
T ss_dssp TBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT--TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEE
T ss_pred CCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC--CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEE
Confidence 223688999999 888888874 688999995 56666666422 234789999998 777
Q ss_pred EEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc------CCCeEEEEcCCceEE
Q psy11036 141 LISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS------GGKRLISASLDHHAK 213 (239)
Q Consensus 141 l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~------~~~~l~s~s~d~~i~ 213 (239)
+++...++.|++|+.. ++.+..+.. ..+...+..++++| +|+.+++.+.+..|+
T Consensus 211 ~v~d~~~~~I~~~~~~~G~~~~~~~~-------------------~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~ 271 (329)
T 3fvz_A 211 CVADRENGRIQCFKTDTKEFVREIKH-------------------ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGF 271 (329)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECC-------------------TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEE
T ss_pred EEEECCCCEEEEEECCCCcEEEEEec-------------------cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEE
Confidence 7777788999999987 443333310 23455677888888 444344444556899
Q ss_pred EEEccCCeeeEEec----CCCCeeeeEecC
Q psy11036 214 IYEMVNFSPVHTLD----YPSPVLSIDVSM 239 (239)
Q Consensus 214 iwd~~~~~~~~~~~----~~~~v~~~~~sp 239 (239)
+|+..+++.+..+. +...+.+++++|
T Consensus 272 ~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~ 301 (329)
T 3fvz_A 272 VMNFSSGEIIDVFKPVRKHFDMPHDIVASE 301 (329)
T ss_dssp EEETTTCCEEEEECCSSSCCSSEEEEEECT
T ss_pred EEEcCCCeEEEEEcCCCCccCCeeEEEECC
Confidence 99999999999874 445688888876
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-16 Score=130.08 Aligned_cols=170 Identities=6% Similarity=-0.066 Sum_probs=118.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCC----------CeEEEEeCCC------CCceeee-cCCCCEEEEEEecCCcEEEEeC-C
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYD----------KTVNVYDTRS------PDPVMSV-NHGSPVESVLCLPSGGIFVTGG-G 104 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~d----------g~v~vw~~~~------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~ 104 (239)
..+..++|+| +++.|+.++.+ ..|++||+.+ ++..... .+...+..++|+|+|+.|+.++ +
T Consensus 130 ~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~ 208 (662)
T 3azo_A 130 LRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWD 208 (662)
T ss_dssp EEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred ccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECC
Confidence 6788999999 78888888776 5899999987 5554444 4556778899999999998766 4
Q ss_pred --------CcEEEEEccCCC---eEEEEEeccCCceEEEEEcCCCCEEEEEecCC--eEEEEEcccceEeeeecceeEEE
Q psy11036 105 --------LDVCIWDMLGGG---KLLHKFTCHHKTVTSLCLASGGKRLISASLDH--HAKIYEMTLKTVSSFTGGLDVCI 171 (239)
Q Consensus 105 --------~~i~~~d~~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~i~~ 171 (239)
..|.+||+...+ +.......+...+..++|+|||++++++..++ .|.+||+.......+
T Consensus 209 ~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l-------- 280 (662)
T 3azo_A 209 HPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL-------- 280 (662)
T ss_dssp TTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES--------
T ss_pred CCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec--------
Confidence 369999997324 34444445578899999999999888887888 444455431111111
Q ss_pred EEccCCCEEEEEEecccC--------cEEEEEEccCCCeEEEEcCCceEEEE--EccCCeeeEEec-CCCCeeee
Q psy11036 172 WDMLGGGKLLHKFTCHHK--------TVTSLCLASGGKRLISASLDHHAKIY--EMVNFSPVHTLD-YPSPVLSI 235 (239)
Q Consensus 172 ~d~~~~~~~~~~~~~h~~--------~v~~~~~s~~~~~l~s~s~d~~i~iw--d~~~~~~~~~~~-~~~~v~~~ 235 (239)
...+.. .+..++|+|+++++++++. +.++|| |+.+++ +..+. +...+..+
T Consensus 281 ------------~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~ 341 (662)
T 3azo_A 281 ------------CRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT 341 (662)
T ss_dssp ------------SCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE
T ss_pred ------------ccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE
Confidence 111111 1456889999999999998 999999 555555 55555 44455555
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.1e-15 Score=112.35 Aligned_cols=185 Identities=15% Similarity=0.100 Sum_probs=135.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCC------------------------CeEEEEeCCCCCceeeec--CCCCEEEEEEecCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYD------------------------KTVNVYDTRSPDPVMSVN--HGSPVESVLCLPSG 96 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~d------------------------g~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~ 96 (239)
+.+.+++++| +++++++...+ ++|.+||..+++....+. +-.....++++|+|
T Consensus 24 ~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 24 GQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp SCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred CCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 7799999999 78888888777 479999999898877664 34578999999999
Q ss_pred cEEEEeC-CCcEEEEEccCCCeEEEEE---------eccCCceEEEEEcC-CCCEEEEEe-cCCeEEEEEcccceEeeee
Q psy11036 97 GIFVTGG-GLDVCIWDMLGGGKLLHKF---------TCHHKTVTSLCLAS-GGKRLISAS-LDHHAKIYEMTLKTVSSFT 164 (239)
Q Consensus 97 ~~l~~~~-~~~i~~~d~~~~~~~~~~~---------~~~~~~i~~i~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~~~ 164 (239)
+++++.. ++.|.+|+.......+..+ ..+......++++| ++..+++.+ .++.|++|+..+..+..+.
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~ 182 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWG 182 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEEC
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEec
Confidence 9877777 6899999986221245555 23444689999999 788888876 6899999996644433331
Q ss_pred cceeEEEEEccCCCEEEEEEecccCcEEEEEEccC-CCeEEEEcCCceEEEEEccCCeeeEEec---CCCCeeeeEecC
Q psy11036 165 GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG-GKRLISASLDHHAKIYEMVNFSPVHTLD---YPSPVLSIDVSM 239 (239)
Q Consensus 165 ~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp 239 (239)
..+ ... ....++-.....++++|+ ++++++...++.|++|+..+++.+..+. ....+.+++|+|
T Consensus 183 ~~g---------~~~--~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p 250 (329)
T 3fvz_A 183 EES---------SGS--SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP 250 (329)
T ss_dssp EEC---------CSS--SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET
T ss_pred cCC---------CCC--CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC
Confidence 000 000 000012234789999998 7888888899999999999899998885 445788888876
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-14 Score=108.44 Aligned_cols=202 Identities=10% Similarity=0.051 Sum_probs=136.7
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC----CeEEEEeCCCCCceeee
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD----KTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~v~vw~~~~~~~~~~~ 81 (239)
.++.|++||.++++.......+. ..+.+++++| +++++++...+ +.|.+||..+++....+
T Consensus 64 ~~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~ 128 (333)
T 2dg1_A 64 FEGNIFKINPETKEIKRPFVSHK--------------ANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDII 128 (333)
T ss_dssp TTCEEEEECTTTCCEEEEEECSS--------------SSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred CCCEEEEEeCCCCcEEEEeeCCC--------------CCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE
Confidence 45788888887777554443444 7799999999 77887777666 68999999877654333
Q ss_pred ---cCCCCEEEEEEecCCcEEEEeCC-------CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEE-EecCCeE
Q psy11036 82 ---NHGSPVESVLCLPSGGIFVTGGG-------LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLIS-ASLDHHA 150 (239)
Q Consensus 82 ---~~~~~v~~~~~~~~~~~l~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~~i 150 (239)
.....+..++++|+++++++... +.|..++.. .++ +..+......+..++|+|+++.++. .+.++.|
T Consensus 129 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~-~~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i 206 (333)
T 2dg1_A 129 EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRL 206 (333)
T ss_dssp CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC-CCE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeE
Confidence 24457899999999998887653 334455543 223 3333333456789999999986654 4557899
Q ss_pred EEEEcc--cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecC
Q psy11036 151 KIYEMT--LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDY 228 (239)
Q Consensus 151 ~i~d~~--~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 228 (239)
.+||++ +..+..+. ......+.++ ..+..++++++|+++++...++.|.+||. +++.+..+..
T Consensus 207 ~~~d~~~~g~~~~~~~-------------~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~ 271 (333)
T 2dg1_A 207 HRIALEDDGVTIQPFG-------------ATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI 271 (333)
T ss_dssp EEEEECTTSSSEEEEE-------------EEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred EEEEecCCCcCccccc-------------ceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc
Confidence 999985 22221110 0011111222 45778999999998888888899999998 5777777764
Q ss_pred CC-------CeeeeEecC
Q psy11036 229 PS-------PVLSIDVSM 239 (239)
Q Consensus 229 ~~-------~v~~~~~sp 239 (239)
+. .+.+++|+|
T Consensus 272 ~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 272 PGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp TTGGGTCSCBCCEEEECT
T ss_pred CCCccccccCcceEEECC
Confidence 33 578888865
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-15 Score=127.20 Aligned_cols=188 Identities=12% Similarity=0.083 Sum_probs=125.9
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeE---------EEEEe--cCCCCE-EEEee-CCCeEEEEe
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVR---------AGTVS--PVSSDI-VISGS-YDKTVNVYD 71 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~~-l~s~~-~dg~v~vw~ 71 (239)
+.++...||....+.....+..+. ..+. ...|+ | +++. |+.++ .+..|.+++
T Consensus 44 ~~~~~~~l~~~~~~~~~~~l~~~~--------------~~~~~~~~~~~~~~~~~~~SP-Dg~~~la~~~~~~~~l~~~~ 108 (662)
T 3azo_A 44 AEAGRATLVRRRADGAEESALPAP--------------WNVRNRVFEYSGFPWAGVPRP-AGGPLLVFTHFGDQRLYAFE 108 (662)
T ss_dssp TTTTEEEEEEECTTSCEEESSCTT--------------CCBCCCGGGTCCCCEEEECCS-SSSCEEEEEBTTTCCEEEEC
T ss_pred ccCCcEEEEEECCCCCcceeCCCC--------------ccccccccccCCccceeeeec-CCCeEEEEEECCCCeEEEEc
Confidence 346788888865444455666554 4444 55566 8 5655 55443 456777777
Q ss_pred CC--C-CCceeeec-----CCCCEEEEEEecCCcEEEEeC-C----------CcEEEEEccCC-----CeEEEEEe-ccC
Q psy11036 72 TR--S-PDPVMSVN-----HGSPVESVLCLPSGGIFVTGG-G----------LDVCIWDMLGG-----GKLLHKFT-CHH 126 (239)
Q Consensus 72 ~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~-~----------~~i~~~d~~~~-----~~~~~~~~-~~~ 126 (239)
+. . ++...... +...+..++|+|+|+.|+.++ + ..|.+||+... ++ ...+. .+.
T Consensus 109 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~ 187 (662)
T 3azo_A 109 PDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAH 187 (662)
T ss_dssp TTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCS
T ss_pred CCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCC
Confidence 76 3 44333223 456788999999999998877 4 47999999731 33 34454 556
Q ss_pred CceEEEEEcCCCCEEEEEecCC--------eEEEEEcccceEeeeecceeEEEEEccCCC---EEEEEEecccCcEEEEE
Q psy11036 127 KTVTSLCLASGGKRLISASLDH--------HAKIYEMTLKTVSSFTGGLDVCIWDMLGGG---KLLHKFTCHHKTVTSLC 195 (239)
Q Consensus 127 ~~i~~i~~~~~~~~l~~~~~d~--------~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~h~~~v~~~~ 195 (239)
..+..++|+|||++|+.++.++ .|++||+. ..+ +.......|...+..+.
T Consensus 188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~-------------------~~g~~~~~~~l~~~~~~~~~~~~ 248 (662)
T 3azo_A 188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT-------------------EDGRFADTRTLLGGPEEAIAQAE 248 (662)
T ss_dssp SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC-------------------TTSCEEEEEEEEEETTBCEEEEE
T ss_pred CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC-------------------CCCcccccEEeCCCCCceEcceE
Confidence 7788899999999999887654 45555544 223 33334445577899999
Q ss_pred EccCCCeEEEEcCCc--eEEEEEccCCeeeEEec
Q psy11036 196 LASGGKRLISASLDH--HAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 196 ~s~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~ 227 (239)
|+|||+++++++.++ .|.+||+.+++......
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~ 282 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR 282 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeeccc
Confidence 999999888888888 67777776776554433
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-14 Score=108.65 Aligned_cols=183 Identities=15% Similarity=0.162 Sum_probs=141.2
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecC
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 83 (239)
++.++.|++||.++++.+.++..+.. ..+.++++.| ++++++ +.++.|..||. +++.+..+..
T Consensus 11 ~~~~~~v~~~d~~tG~~~w~~~~~~~-------------~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 11 GSGWNKIAIINKDTKEIVWEYPLEKG-------------WECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CTTCSEEEEEETTTTEEEEEEECCTT-------------CCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred eCCCCEEEEEECCCCeEEEEeCCCcc-------------CCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcC
Confidence 45789999999999999999987630 2578999999 788888 34678999998 8888888843
Q ss_pred --CCCEEEEEEecCCcEEEEeCC--CcEEEEEccCCCeEEEEEec------cCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy11036 84 --GSPVESVLCLPSGGIFVTGGG--LDVCIWDMLGGGKLLHKFTC------HHKTVTSLCLASGGKRLISASLDHHAKIY 153 (239)
Q Consensus 84 --~~~v~~~~~~~~~~~l~~~~~--~~i~~~d~~~~~~~~~~~~~------~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 153 (239)
...+.++.+.|+|+.+++..+ +.+..+|. .++.+.++.. +......++..++|+++++...++.|..|
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM--KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI 151 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT--TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEE
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEEEeC--CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEE
Confidence 357888999999999988663 55555554 5776666642 11244566788999999999999999999
Q ss_pred EcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 154 EMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 154 d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
|.++ +.+..+... ..+.++...++|+++++++.++.|..+|..+|+.+.++.
T Consensus 152 d~~G---------------------~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 152 APNG---------------------QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp CTTS---------------------CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CCCC---------------------CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 9873 333344432 334567778999999999988999999999999988885
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.8e-14 Score=114.26 Aligned_cols=189 Identities=13% Similarity=0.039 Sum_probs=144.2
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCC--CCCceeee
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTR--SPDPVMSV 81 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~~~~ 81 (239)
...++.|.++|..+++.+.++... ..+..+.++| +++++++++.|+.|.+||+. +++.+..+
T Consensus 173 ~~~~~~V~viD~~t~~v~~~i~~g---------------~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i 236 (567)
T 1qks_A 173 LRDAGQIALIDGSTYEIKTVLDTG---------------YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEI 236 (567)
T ss_dssp ETTTTEEEEEETTTCCEEEEEECS---------------SCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred eCCCCeEEEEECCCCeEEEEEeCC---------------CCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEE
Confidence 345789999999999999988866 4567999999 88999999999999999996 78888777
Q ss_pred cCCCCEEEEEEe----cCCcEEEEeC--CCcEEEEEccCCCeEEEEEecc----------CC-ceEEEEEcCCCCE-EEE
Q psy11036 82 NHGSPVESVLCL----PSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCH----------HK-TVTSLCLASGGKR-LIS 143 (239)
Q Consensus 82 ~~~~~v~~~~~~----~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~----------~~-~i~~i~~~~~~~~-l~~ 143 (239)
........++++ |+|++++++. ++.+.++|.. +.+.+..+... .. .+..+..++++.. ++.
T Consensus 237 ~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~-t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 237 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred ecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC-CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 666667899999 6999999888 6999999987 77777776532 12 5778888887654 445
Q ss_pred EecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEc-CCceEEEEEccCCee
Q psy11036 144 ASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMVNFSP 222 (239)
Q Consensus 144 ~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~ 222 (239)
...+|.|.++|.... ....+..+ ........+.|+|+|+++++++ .++.|.++|+.+++.
T Consensus 316 ~~~~g~v~~vd~~~~------------------~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 316 VKETGKILLVDYTDL------------------NNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 376 (567)
T ss_dssp ETTTTEEEEEETTCS------------------SEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred ecCCCeEEEEecCCC------------------ccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence 556688888887610 00111112 2234566889999999887655 678999999999998
Q ss_pred eEEecC
Q psy11036 223 VHTLDY 228 (239)
Q Consensus 223 ~~~~~~ 228 (239)
+..+..
T Consensus 377 ~~~i~v 382 (567)
T 1qks_A 377 VAIEDT 382 (567)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 776654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-15 Score=115.94 Aligned_cols=182 Identities=13% Similarity=0.107 Sum_probs=122.6
Q ss_pred EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC------------------------
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD------------------------ 64 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------------------------ 64 (239)
.|++||+.+++...... +. . +..++|+| +++.|+.++.+
T Consensus 86 ~l~~~~~~~g~~~~l~~-~~--------------~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (347)
T 2gop_A 86 EIWVADLETLSSKKILE-AK--------------N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFD 148 (347)
T ss_dssp EEEEEETTTTEEEEEEE-ES--------------E-EEEEEECT-TSSEEEEEEECCCC---------CCCC--------
T ss_pred eEEEEECCCCceEEEEc-CC--------------C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCccccc
Confidence 47888888776554433 33 5 88999999 77777766532
Q ss_pred ---CeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-C------C-cEEEEEccCCCeEEEEEeccCCceEEEE
Q psy11036 65 ---KTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-G------L-DVCIWDMLGGGKLLHKFTCHHKTVTSLC 133 (239)
Q Consensus 65 ---g~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~------~-~i~~~d~~~~~~~~~~~~~~~~~i~~i~ 133 (239)
..|.+||+.+++.+..+... .+..+.|+|+| +++++. + . ...+|.+. .++. ..+..+ ..+..+
T Consensus 149 ~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~~~-~~~~~~- 222 (347)
T 2gop_A 149 GEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKE-EKMFEK-VSFYAV- 222 (347)
T ss_dssp -CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEE-EEEEEE-ESEEEE-
T ss_pred CccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCce-EEeccC-cceeeE-
Confidence 57899999888763444223 78899999999 776664 2 2 45666665 4543 334434 455544
Q ss_pred EcCCCCEEEEEecCC--------eEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEE-EEEccCCCeEE
Q psy11036 134 LASGGKRLISASLDH--------HAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTS-LCLASGGKRLI 204 (239)
Q Consensus 134 ~~~~~~~l~~~~~d~--------~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~ 204 (239)
+|+|+.|+.++.++ .|.+|| . ++.......+...+.. +.|+ ++ +++
T Consensus 223 -spdg~~l~~~~~~~~~~~~~~~~l~~~d-~---------------------~~~~~l~~~~~~~~~~~~~~s-dg-~~~ 277 (347)
T 2gop_A 223 -DSDGERILLYGKPEKKYMSEHNKLYIYD-G---------------------KEVMGILDEVDRGVGQAKIKD-GK-VYF 277 (347)
T ss_dssp -EECSSCEEEEECCSSSCCCSSCEEEEEC-S---------------------SCEEESSTTCCSEEEEEEEET-TE-EEE
T ss_pred -CCCCCEEEEEEccccCCccccceEEEEC-C---------------------CceEeccccCCcccCCccEEc-Cc-EEE
Confidence 99999988877543 344444 2 2222222345567775 8898 88 888
Q ss_pred EEcCCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 205 SASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 205 s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
+++.++.++|| +.+++....+.....|.+++|+|
T Consensus 278 ~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 278 TLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp EEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS
T ss_pred EEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC
Confidence 88889999999 87666655555667788888876
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.2e-15 Score=112.29 Aligned_cols=212 Identities=9% Similarity=0.005 Sum_probs=149.1
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGS 85 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 85 (239)
.++.|.+||..+++.+.++... .....+++++ ++.++++...++.|.+||..+++....+....
T Consensus 62 ~~~~v~viD~~t~~~~~~i~~~---------------~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~ 125 (328)
T 3dsm_A 62 NSHVIFAIDINTFKEVGRITGF---------------TSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPD 125 (328)
T ss_dssp GGTEEEEEETTTCCEEEEEECC---------------SSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTT
T ss_pred CCCEEEEEECcccEEEEEcCCC---------------CCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCC
Confidence 4689999999999998888644 5688999988 56555555488999999999988776664333
Q ss_pred ------CEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecC----------
Q psy11036 86 ------PVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD---------- 147 (239)
Q Consensus 86 ------~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------- 147 (239)
....+++ .++..+++.. ++.|.++|+. +++....+... .....++++|+|++++++..+
T Consensus 126 ~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~-t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~ 202 (328)
T 3dsm_A 126 MDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTE-TDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEA 202 (328)
T ss_dssp CCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETT-TTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCC
T ss_pred ccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECC-CCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCC
Confidence 5566777 4555555542 6899999998 77777777643 345789999999977776654
Q ss_pred CeEEEEEcc-cceEeeee---------------------cceeEEEEEccCCCEEEEE-EecccCcEEEEEEcc-CCCeE
Q psy11036 148 HHAKIYEMT-LKTVSSFT---------------------GGLDVCIWDMLGGGKLLHK-FTCHHKTVTSLCLAS-GGKRL 203 (239)
Q Consensus 148 ~~i~i~d~~-~~~~~~~~---------------------~~~~i~~~d~~~~~~~~~~-~~~h~~~v~~~~~s~-~~~~l 203 (239)
+.|.++|.. .+....+. ....+.++|..+....... +..+......++++| +++++
T Consensus 203 ~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~ly 282 (328)
T 3dsm_A 203 PSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVY 282 (328)
T ss_dssp CEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEE
T ss_pred ceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEccEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEE
Confidence 789999987 44333321 0114667777553221111 111135688999999 56666
Q ss_pred EEE----cCCceEEEEEccCCeeeEEecCCCCeeeeEe
Q psy11036 204 ISA----SLDHHAKIYEMVNFSPVHTLDYPSPVLSIDV 237 (239)
Q Consensus 204 ~s~----s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~ 237 (239)
++. ..++.|.+||.. ++.+.++........++|
T Consensus 283 va~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 283 VADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp EEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred EEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 666 678999999998 999999886556666665
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=134.35 Aligned_cols=180 Identities=8% Similarity=0.023 Sum_probs=123.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCC-----CEEEEEEecCCcEEEEeCC----------Cc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGS-----PVESVLCLPSGGIFVTGGG----------LD 106 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~-----~v~~~~~~~~~~~l~~~~~----------~~ 106 (239)
....+++|+| ++++++++ |++|++||+.+++....+. +.. ....+.|+|+|+.++.+.+ +.
T Consensus 17 ~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 3456899999 78888876 8999999999998776663 322 2245889999999988874 56
Q ss_pred EEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec
Q psy11036 107 VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC 186 (239)
Q Consensus 107 i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 186 (239)
+.+||+. +++. ..+..|...+...+|+|||+.||.+ .++.|++|++.+.....++. .+.....+.+
T Consensus 94 ~~~~d~~-~~~~-~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~-----------~g~~~~~~~g 159 (740)
T 4a5s_A 94 YDIYDLN-KRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITW-----------TGKEDIIYNG 159 (740)
T ss_dssp EEEEETT-TTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCS-----------CCBTTTEEES
T ss_pred EEEEECC-CCcE-EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcC-----------CCCccceecC
Confidence 7899997 5553 4466677889999999999999988 57899999987222222211 0111111122
Q ss_pred cc---------CcEEEEEEccCCCeEEEEcCC------------------------------------ceEEEEEccC--
Q psy11036 187 HH---------KTVTSLCLASGGKRLISASLD------------------------------------HHAKIYEMVN-- 219 (239)
Q Consensus 187 h~---------~~v~~~~~s~~~~~l~s~s~d------------------------------------~~i~iwd~~~-- 219 (239)
+. +....+.|||||+.||.++.| ..|++||+.+
T Consensus 160 ~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~ 239 (740)
T 4a5s_A 160 ITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS 239 (740)
T ss_dssp BCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCC
T ss_pred cccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCC
Confidence 22 122358899999999887532 1588899988
Q ss_pred -Ce--eeEEec-------CCCCeeeeEecC
Q psy11036 220 -FS--PVHTLD-------YPSPVLSIDVSM 239 (239)
Q Consensus 220 -~~--~~~~~~-------~~~~v~~~~~sp 239 (239)
++ ....+. +...+..++|||
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp 269 (740)
T 4a5s_A 240 SVTNATSIQITAPASMLIGDHYLCDVTWAT 269 (740)
T ss_dssp SSSCCCEEEECCCHHHHTSCEEEEEEEEEE
T ss_pred CCCcceEEEecCCccCCCCCeEEEEEEEeC
Confidence 73 222332 445688889986
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-14 Score=107.52 Aligned_cols=195 Identities=11% Similarity=0.082 Sum_probs=136.0
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec---
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN--- 82 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--- 82 (239)
.++.|+.||..++ ...+..+. ..+.+++++| +++++++...++.|.+||..+++......
T Consensus 48 ~~~~i~~~~~~~~--~~~~~~~~--------------~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~ 110 (296)
T 3e5z_A 48 RQNRTWAWSDDGQ--LSPEMHPS--------------HHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFE 110 (296)
T ss_dssp GGTEEEEEETTSC--EEEEESSC--------------SSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEET
T ss_pred CCCEEEEEECCCC--eEEEECCC--------------CCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccC
Confidence 4578999998776 55666665 7799999999 78888777777899999998887544332
Q ss_pred --CCCCEEEEEEecCCcEEEEeCC----------------CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEE
Q psy11036 83 --HGSPVESVLCLPSGGIFVTGGG----------------LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA 144 (239)
Q Consensus 83 --~~~~v~~~~~~~~~~~l~~~~~----------------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 144 (239)
....+..++++|+|+++++... +.-.+|.+...++ +..+..+......++|+|+++.+++.
T Consensus 111 ~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~~~~~~~gi~~s~dg~~lv~~ 189 (296)
T 3e5z_A 111 GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-LSAPIRDRVKPNGLAFLPSGNLLVSD 189 (296)
T ss_dssp TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-EEEEECCCSSEEEEEECTTSCEEEEE
T ss_pred CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC-EEEeecCCCCCccEEECCCCCEEEEe
Confidence 1234668999999998886320 1224454442333 44455566778999999999988777
Q ss_pred ecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeee
Q psy11036 145 SLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPV 223 (239)
Q Consensus 145 ~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~ 223 (239)
+.++.|.+|++. ...+. .....+..+...+..++++++|+++++. ++.|.+|+.. ++.+
T Consensus 190 ~~~~~i~~~~~~~~g~~~-----------------~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~ 249 (296)
T 3e5z_A 190 TGDNATHRYCLNARGETE-----------------YQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL 249 (296)
T ss_dssp TTTTEEEEEEECSSSCEE-----------------EEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred CCCCeEEEEEECCCCcCc-----------------CCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE
Confidence 778899999885 11110 0011112244556789999999977766 7899999986 7888
Q ss_pred EEecCCCCeeeeEec
Q psy11036 224 HTLDYPSPVLSIDVS 238 (239)
Q Consensus 224 ~~~~~~~~v~~~~~s 238 (239)
..+..+..+.+++|.
T Consensus 250 ~~~~~~~~~~~~~f~ 264 (296)
T 3e5z_A 250 GRVLTPQTTSNLCFG 264 (296)
T ss_dssp EEEECSSCCCEEEEE
T ss_pred EEEECCCCceeEEEE
Confidence 888744448888883
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.5e-15 Score=115.48 Aligned_cols=203 Identities=8% Similarity=-0.038 Sum_probs=132.3
Q ss_pred eeCCCcceeeeeeCCceeeccceeeccCCCCCeEE-----EEEecCCCCEEEEeeC-CC--eEEEEeCCCCCceeeec-C
Q psy11036 13 WDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRA-----GTVSPVSSDIVISGSY-DK--TVNVYDTRSPDPVMSVN-H 83 (239)
Q Consensus 13 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~l~s~~~-dg--~v~vw~~~~~~~~~~~~-~ 83 (239)
.|..++..+..+..+. ..... .+|+| +++.|+.++. ++ .|.+||+.+++...... +
T Consensus 15 ~~~~~g~~~~~lt~~~--------------~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~ 79 (388)
T 3pe7_A 15 QDASTGAQVTRLTPPD--------------VTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGR 79 (388)
T ss_dssp ECTTTCCEEEECSCTT--------------SCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSS
T ss_pred ecCCCCcceEEecCCc--------------ccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCC
Confidence 4777888888887775 55555 78999 7888877776 66 48888998887665553 4
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEE--EcCCCCEEEEEecCCeEEEEEcccceE
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLC--LASGGKRLISASLDHHAKIYEMTLKTV 160 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~--~~~~~~~l~~~~~d~~i~i~d~~~~~~ 160 (239)
...+..+.|+|+++.|+.+. ++.+.+||+. +++.......+...+.... ++|+++.++....++. +....
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~------~~~~~ 152 (388)
T 3pe7_A 80 GDNTFGGFLSPDDDALFYVKDGRNLMRVDLA-TLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRRE------DWVPL 152 (388)
T ss_dssp CBCSSSCEECTTSSEEEEEETTTEEEEEETT-TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGG------GCCCC
T ss_pred CCCccceEEcCCCCEEEEEeCCCeEEEEECC-CCcceeeeechhhcccccceeECCCCCeeccccccCc------ccccc
Confidence 44444678999999998888 6789999998 6666555555555554443 4889988775321100 00000
Q ss_pred ---------eeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEcCC------ceEEEEEccCCeeeE
Q psy11036 161 ---------SSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISASLD------HHAKIYEMVNFSPVH 224 (239)
Q Consensus 161 ---------~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d------~~i~iwd~~~~~~~~ 224 (239)
........|.+||+.+. +. ..+..+...+..+.|+| ||+.|+..+.+ ..|.++|...++...
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~d~~~g-~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~ 230 (388)
T 3pe7_A 153 TDWKKFHEFYFTKPCCRLMRVDLKTG-ES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK 230 (388)
T ss_dssp CSHHHHHHHGGGCCCEEEEEEETTTC-CE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE
T ss_pred cccchhhhhhccCCcceEEEEECCCC-ce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE
Confidence 00112244666666553 22 33345567789999999 99988877653 378888876655433
Q ss_pred EecCC--CCeeeeEecC
Q psy11036 225 TLDYP--SPVLSIDVSM 239 (239)
Q Consensus 225 ~~~~~--~~v~~~~~sp 239 (239)
..... ..+..++|||
T Consensus 231 l~~~~~~~~~~~~~~sp 247 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVP 247 (388)
T ss_dssp SCCCCTTEEEEEEEECT
T ss_pred eeeCCCCcccccceECC
Confidence 33333 2577788887
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-14 Score=121.31 Aligned_cols=194 Identities=8% Similarity=0.022 Sum_probs=133.5
Q ss_pred CeEEEEEecCCCCEEEEeeCCC-----eEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCc-----------
Q psy11036 44 YVRAGTVSPVSSDIVISGSYDK-----TVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLD----------- 106 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~----------- 106 (239)
.+..++|+| ++++|+.+..++ .|++||+.+++..........+..++|+|+|+.|+.+. ++.
T Consensus 126 ~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 126 ALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 578999999 788887655433 89999999988765332222366799999999888776 443
Q ss_pred -----EEEEEccCCCe----EEEEEeccCCceEEEEEcCCCCEEEEEec-----CCeEEEEEccc------c--eEeeee
Q psy11036 107 -----VCIWDMLGGGK----LLHKFTCHHKTVTSLCLASGGKRLISASL-----DHHAKIYEMTL------K--TVSSFT 164 (239)
Q Consensus 107 -----i~~~d~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----d~~i~i~d~~~------~--~~~~~~ 164 (239)
|.+|++. +++ .+.....+...+..+.|+|||++|+..+. +..|.+||+.. . ....+.
T Consensus 205 ~~~~~v~~~~l~-t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~ 283 (710)
T 2xdw_A 205 NLHQKLYYHVLG-TDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (710)
T ss_dssp CCCCEEEEEETT-SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred CCCCEEEEEECC-CCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence 9999997 433 22222234556789999999999888765 57899999863 2 222221
Q ss_pred -------------------------cceeEEEEEccCCCE-EEEEEecccC--cEEEEEEccCCCeEEEEcCCce--EEE
Q psy11036 165 -------------------------GGLDVCIWDMLGGGK-LLHKFTCHHK--TVTSLCLASGGKRLISASLDHH--AKI 214 (239)
Q Consensus 165 -------------------------~~~~i~~~d~~~~~~-~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~d~~--i~i 214 (239)
....|.+||+.+... ....+..|.. .+..++|++++.++++...|+. |++
T Consensus 284 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~ 363 (710)
T 2xdw_A 284 DNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (710)
T ss_dssp CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred CCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence 123477888766431 1233444443 6888999988888888888885 566
Q ss_pred EEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 215 YEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 215 wd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
|++.+++.+..+. +.+.+..++++|
T Consensus 364 ~~~~~g~~~~~l~~~~~~v~~~~~s~ 389 (710)
T 2xdw_A 364 HDLATGALLKIFPLEVGSVVGYSGQK 389 (710)
T ss_dssp EETTTCCEEEEECCCSSEEEEEECCT
T ss_pred EECCCCCEEEecCCCCceEEEEecCC
Confidence 7776788777776 455677777765
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.4e-15 Score=115.17 Aligned_cols=163 Identities=13% Similarity=0.037 Sum_probs=126.2
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-----------ceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD-----------PVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWD 111 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d 111 (239)
..+..+++++ ...++++|+.++ +++|++...+ +.....+.. |+.++| ++.+|+++.++.|++||
T Consensus 38 ~~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~d 112 (388)
T 1xip_A 38 ASLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALYSLD 112 (388)
T ss_dssp SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEEEEE
T ss_pred ccccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEEEEE
Confidence 5789999999 788999999875 6669865322 223335666 999999 88999999889999999
Q ss_pred ccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcE
Q psy11036 112 MLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTV 191 (239)
Q Consensus 112 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v 191 (239)
++ ..........|..++.++.+.+. .+++++.||.+.+||+. ...... +...|
T Consensus 113 v~-sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~--------------------~~~~~~----~~~~V 165 (388)
T 1xip_A 113 LE-ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLR--------------------TKSTKQ----LAQNV 165 (388)
T ss_dssp SS-STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETT--------------------TCCEEE----EEESE
T ss_pred ch-hhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEcc--------------------CCcccc----ccCCc
Confidence 98 44455566678888988887654 38889999999999997 222221 34579
Q ss_pred EEEEEccCCCeEEEEcCCceEEEEEccCCee--eEEe------c----CCCCeeeeEecC
Q psy11036 192 TSLCLASGGKRLISASLDHHAKIYEMVNFSP--VHTL------D----YPSPVLSIDVSM 239 (239)
Q Consensus 192 ~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~------~----~~~~v~~~~~sp 239 (239)
++++|||+| ++.|..||++++|+...++. .+++ . ++..|.++.|.+
T Consensus 166 s~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~ 223 (388)
T 1xip_A 166 TSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS 223 (388)
T ss_dssp EEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred eEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec
Confidence 999999999 67788999999999988776 5666 2 456799999864
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-13 Score=103.42 Aligned_cols=201 Identities=9% Similarity=0.015 Sum_probs=142.1
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGS 85 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 85 (239)
.++.|.++|.++++....+..... ..........+++. ++.++++...++.|.++|..+++.+.++....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n--------~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~ 84 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRAN--------GFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGFT 84 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHH--------SSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECCS
T ss_pred CCceEEEEECCCCEEhhhhHhhhc--------CcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCCC
Confidence 378999999999887665521100 00000346778775 46677777778999999999999988886667
Q ss_pred CEEEEEEecCCcEEEEe-CCCcEEEEEccCCCeEEEEEeccC-----CceEEEEEcCCCCEEEEEe-cCCeEEEEEcccc
Q psy11036 86 PVESVLCLPSGGIFVTG-GGLDVCIWDMLGGGKLLHKFTCHH-----KTVTSLCLASGGKRLISAS-LDHHAKIYEMTLK 158 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~-~~~~i~~~d~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~ 158 (239)
....++++++++.+++. .++.|.+||+. +.+....+.... .....+++ .+++.+++.. .++.|.++|+.
T Consensus 85 ~p~~i~~~~~g~lyv~~~~~~~v~~iD~~-t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~-- 160 (328)
T 3dsm_A 85 SPRYIHFLSDEKAYVTQIWDYRIFIINPK-TYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTE-- 160 (328)
T ss_dssp SEEEEEEEETTEEEEEEBSCSEEEEEETT-TTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETT--
T ss_pred CCcEEEEeCCCeEEEEECCCCeEEEEECC-CCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECC--
Confidence 88999999998655555 37999999998 777776666433 14456777 3444444433 47889999887
Q ss_pred eEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCC----------ceEEEEEccCCeeeEEecC
Q psy11036 159 TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD----------HHAKIYEMVNFSPVHTLDY 228 (239)
Q Consensus 159 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d----------~~i~iwd~~~~~~~~~~~~ 228 (239)
+.+....+.. ......++++|+|++++++..+ +.|.++|..+++....+..
T Consensus 161 ------------------t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 161 ------------------TDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp ------------------TTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC
T ss_pred ------------------CCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec
Confidence 2344444333 2234678899999988877665 7999999999998888774
Q ss_pred --CCCeeeeEecC
Q psy11036 229 --PSPVLSIDVSM 239 (239)
Q Consensus 229 --~~~v~~~~~sp 239 (239)
......++|+|
T Consensus 222 ~~g~~p~~la~~~ 234 (328)
T 3dsm_A 222 KLGDWPSEVQLNG 234 (328)
T ss_dssp CTTCCCEEEEECT
T ss_pred CCCCCceeEEEec
Confidence 34788999886
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-15 Score=115.44 Aligned_cols=178 Identities=9% Similarity=0.002 Sum_probs=116.2
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEE-------------------EEEecCCCCEEEEe-----e
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRA-------------------GTVSPVSSDIVISG-----S 62 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~s~-----~ 62 (239)
++.|++||+.+++....+..+. ..... ++|+| +++.++.. .
T Consensus 101 ~~~l~~~d~~~~~~~~~~~~~~--------------~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~ 165 (396)
T 3c5m_A 101 ELNLMKVDLETLEEQVIYTVDE--------------EWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTN 165 (396)
T ss_dssp TTEEEEEETTTCCEEEEEECCT--------------TEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCcEEEEeccc--------------ccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCC
Confidence 4679999998887666555443 21111 34567 55555543 4
Q ss_pred CCCeEEEEeCCCCCceeeecCCCCEEEEEEec-CCcEEEEeC-C------CcEEEEEccCCCeEEEEEecc--CCceEEE
Q psy11036 63 YDKTVNVYDTRSPDPVMSVNHGSPVESVLCLP-SGGIFVTGG-G------LDVCIWDMLGGGKLLHKFTCH--HKTVTSL 132 (239)
Q Consensus 63 ~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~------~~i~~~d~~~~~~~~~~~~~~--~~~i~~i 132 (239)
.+..|.+||+.+++......+...+..+.|+| ++..++... + ..|.+||+. .++. ..+..+ ...+..+
T Consensus 166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~~~-~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED-GSNV-RKIKEHAEGESCTHE 243 (396)
T ss_dssp CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT-SCCC-EESSCCCTTEEEEEE
T ss_pred CcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC-CCce-eEeeccCCCccccce
Confidence 56789999999888766556677899999999 787666554 2 368888886 3332 233323 2357889
Q ss_pred EEcCCCCEEEEEecC-----CeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEE
Q psy11036 133 CLASGGKRLISASLD-----HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISA 206 (239)
Q Consensus 133 ~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~ 206 (239)
+|+|+|+.|+.++.+ +.|++||+. + ++....... .. .. +.|+| +|++++.+
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~-------------------~-g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~ 300 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPE-------------------T-LENEEVMVM-PP-CS-HLMSNFDGSLMVGD 300 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTT-------------------T-CCEEEEEEC-CS-EE-EEEECSSSSEEEEE
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECC-------------------C-CCeEEeeeC-CC-CC-CCccCCCCceEEEe
Confidence 999999988777654 347777765 2 211111111 11 22 78999 99988875
Q ss_pred c----------------CCceEEEEEccCCeeeE
Q psy11036 207 S----------------LDHHAKIYEMVNFSPVH 224 (239)
Q Consensus 207 s----------------~d~~i~iwd~~~~~~~~ 224 (239)
+ .+..|++||+.+++...
T Consensus 301 ~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 334 (396)
T 3c5m_A 301 GCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK 334 (396)
T ss_dssp ECCC----------CCCCCCEEEEEETTTTBCCE
T ss_pred cCCcceeeccccccccCCCCcEEEEecccCceEE
Confidence 4 34789999998877543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-13 Score=104.91 Aligned_cols=212 Identities=12% Similarity=0.079 Sum_probs=144.5
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee----------CCCeEEEEeCCCCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS----------YDKTVNVYDTRSPD 76 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~v~vw~~~~~~ 76 (239)
++.|.+.|..+++.+.++.... .+ . ++++| +++.++++. .++.|.+||..+.+
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~--------------~P-~-va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGF--------------LP-N-PVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECS--------------SC-E-EEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCEEEEEECCCCeEEEEEECCC--------------CC-c-EEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 5799999999999999998776 65 4 99999 666665544 36789999999999
Q ss_pred ceeeecCC--------CCEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeEEEEEecc--------------------
Q psy11036 77 PVMSVNHG--------SPVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKLLHKFTCH-------------------- 125 (239)
Q Consensus 77 ~~~~~~~~--------~~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~-------------------- 125 (239)
.+..+... .....++++|+|++++++. ++.|.++|+. +++.+.++...
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~-t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG 199 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE-GKAFKRMLDVPDCYHIFPTAPDTFFMHCRDG 199 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC-CCcEEEEEECCCcceeecCCCceeEEECCCC
Confidence 88877321 2456799999999988875 4789999998 66655554310
Q ss_pred --------C-CceEE----------------EEEc-CCCCEEEEEecCCeEEEEEcccc---eEeee-------------
Q psy11036 126 --------H-KTVTS----------------LCLA-SGGKRLISASLDHHAKIYEMTLK---TVSSF------------- 163 (239)
Q Consensus 126 --------~-~~i~~----------------i~~~-~~~~~l~~~~~d~~i~i~d~~~~---~~~~~------------- 163 (239)
. +.+.. ..|. ++|+++ ..+.+|.|.+.|+.+. .+..+
T Consensus 200 ~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 200 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp CEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred CEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE-EEeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence 0 11100 1121 234333 3445677777776411 11000
Q ss_pred -------------------e----------cceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC-eEEEE-cCCceE
Q psy11036 164 -------------------T----------GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISA-SLDHHA 212 (239)
Q Consensus 164 -------------------~----------~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~-s~d~~i 212 (239)
. ....|.+.|..+ .+.+..+.. ...+..+.+++|++ +|+++ ..++.|
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~V 356 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTL 356 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeE
Confidence 0 023467777766 444444432 23577899999997 66554 569999
Q ss_pred EEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 213 KIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.++|..+++.+.++...+..+.|.++|
T Consensus 357 sViD~~t~k~~~~i~~~~~p~~l~~s~ 383 (386)
T 3sjl_D 357 YIHDAESGEELRSVNQLGHGPQVITTA 383 (386)
T ss_dssp EEEETTTCCEEEEECCCCSSCCEEEEC
T ss_pred EEEECCCCcEEEEecCCCCCceeEECC
Confidence 999999999999999888888887765
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-14 Score=113.01 Aligned_cols=192 Identities=9% Similarity=-0.062 Sum_probs=122.1
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCCC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSP 86 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~ 86 (239)
..|++||+.+++.......+. .....+.|+| +++.|+.++.++.|.+||+.+++...... +...
T Consensus 60 ~~l~~~d~~~~~~~~l~~~~~--------------~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 124 (396)
T 3c5m_A 60 RNYYLLNLETQQAVQLTEGKG--------------DNTFGGFIST-DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW 124 (396)
T ss_dssp CEEEEEETTTTEEEECCCSSC--------------BCTTTCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE
T ss_pred ceEEEEECCCCcEEEeecCCC--------------CccccceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc
Confidence 478888988877554433332 2233478999 78999888888999999999887655443 2221
Q ss_pred EEE-------------------EEEecCCcEEEEe------CCCcEEEEEccCCCeEEEEEeccCCceEEEEEcC-CCCE
Q psy11036 87 VES-------------------VLCLPSGGIFVTG------GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKR 140 (239)
Q Consensus 87 v~~-------------------~~~~~~~~~l~~~------~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~ 140 (239)
... +.|+|+++.++.. .+..|.+||+. .++.... ..+...+..+.|+| +++.
T Consensus 125 ~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~-~g~~~~~-~~~~~~~~~~~~sp~dg~~ 202 (396)
T 3c5m_A 125 KGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE-TGELEVI-HQDTAWLGHPIYRPFDDST 202 (396)
T ss_dssp EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETT-TCCEEEE-EEESSCEEEEEEETTEEEE
T ss_pred CCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECC-CCcEEee-ccCCcccccceECCCCCCE
Confidence 212 2456666655443 24678999997 5554433 35677889999999 7887
Q ss_pred EEEEecC------CeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecc--cCcEEEEEEccCCCeEEEEcCC---
Q psy11036 141 LISASLD------HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH--HKTVTSLCLASGGKRLISASLD--- 209 (239)
Q Consensus 141 l~~~~~d------~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~d--- 209 (239)
|+..+.+ ..|.+||+.+ .+ ...+..+ ...+..++|+|+|++|+.++.+
T Consensus 203 l~~~~~~~~~~~~~~l~~~d~~~--------------------~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (396)
T 3c5m_A 203 VGFCHEGPHDLVDARMWLVNEDG--------------------SN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQ 261 (396)
T ss_dssp EEEEECSCSSSCSCCCEEEETTS--------------------CC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTT
T ss_pred EEEEecCCCCCCCceEEEEECCC--------------------Cc-eeEeeccCCCccccceEECCCCCEEEEEecCCCC
Confidence 7776543 2456666541 11 1111122 2357789999999988777544
Q ss_pred --ceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 210 --HHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 210 --~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
+.|++||+.+++.......+. .. ++|+|
T Consensus 262 ~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~ 291 (396)
T 3c5m_A 262 TDRVIYKANPETLENEEVMVMPP-CS-HLMSN 291 (396)
T ss_dssp CCEEEEEECTTTCCEEEEEECCS-EE-EEEEC
T ss_pred ccceEEEEECCCCCeEEeeeCCC-CC-CCccC
Confidence 559999998887544333322 22 66654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-13 Score=101.79 Aligned_cols=174 Identities=6% Similarity=0.033 Sum_probs=120.7
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHG 84 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~ 84 (239)
.++.++.| .++....+..+. ..+.+++|+| ++++++++..++.|.+||..+++..... .+.
T Consensus 25 ~~~~~~~~---~~~~~~~~~~~~--------------~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 86 (333)
T 2dg1_A 25 SESELQTI---TAEPWLEISKKG--------------LQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHK 86 (333)
T ss_dssp CGGGSCEE---ECEEEEEEESSC--------------CCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSS
T ss_pred ecccCccc---ccceeEEEeccC--------------ccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC
Confidence 34566666 344555566655 6789999999 7888888888999999999888765544 566
Q ss_pred CCEEEEEEecCCcEEEEeC-C----CcEEEEEccCCCeEEEEEe--ccCCceEEEEEcCCCCEEEEEec------CCeEE
Q psy11036 85 SPVESVLCLPSGGIFVTGG-G----LDVCIWDMLGGGKLLHKFT--CHHKTVTSLCLASGGKRLISASL------DHHAK 151 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~-~----~~i~~~d~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~------d~~i~ 151 (239)
..+.+++++|+++++++.. + +.|.+||.. .+.....+. .+...+..++++|+|+.+++... .+.|.
T Consensus 87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~ 165 (333)
T 2dg1_A 87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN-GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY 165 (333)
T ss_dssp SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT-SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC-CCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEE
Confidence 7899999999999888776 4 589999987 444332332 23457899999999987776543 23444
Q ss_pred EEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeE-EEEcCCceEEEEEccC
Q psy11036 152 IYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL-ISASLDHHAKIYEMVN 219 (239)
Q Consensus 152 i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~d~~i~iwd~~~ 219 (239)
.+|..+ .+.. .+..+...+..++|+|+++.| ++.+.++.|.+||+.+
T Consensus 166 ~~~~~~--------------------~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 166 YVSPDF--------------------RTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp EECTTS--------------------CCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EEeCCC--------------------CEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 444331 1111 112223457889999999855 5556688999999963
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-13 Score=116.34 Aligned_cols=194 Identities=15% Similarity=0.055 Sum_probs=129.0
Q ss_pred CCeEEEEEecCCCCEEE-----EeeCCCeEEEEeCCCCCce-eeecCCCCEEEEEEecCCcEEEEeC-CCc---------
Q psy11036 43 DYVRAGTVSPVSSDIVI-----SGSYDKTVNVYDTRSPDPV-MSVNHGSPVESVLCLPSGGIFVTGG-GLD--------- 106 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~-----s~~~dg~v~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~~~--------- 106 (239)
..+..++|+| ++++|+ .|+.+.+|++||+.+++.. ...........++|+|+|+.|+.+. +..
T Consensus 121 ~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~ 199 (695)
T 2bkl_A 121 VSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERP 199 (695)
T ss_dssp EEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred EEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCC
Confidence 3688999999 788887 4555678999999998865 2111111126789999999888876 444
Q ss_pred ----EEEEEccCCCe----EEEEEeccCCceEEEEEcCCCCEEEEEecCC----eEEEEEcccceEeee-----------
Q psy11036 107 ----VCIWDMLGGGK----LLHKFTCHHKTVTSLCLASGGKRLISASLDH----HAKIYEMTLKTVSSF----------- 163 (239)
Q Consensus 107 ----i~~~d~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~----------- 163 (239)
|++|++. +++ .+.....+...+..+.|+|||++|+..+.++ .|.+++........+
T Consensus 200 ~~~~v~~~~l~-t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 278 (695)
T 2bkl_A 200 GYTTIRYHTLG-TEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVH 278 (695)
T ss_dssp GGCEEEEEETT-SCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEE
T ss_pred CCCEEEEEECC-CCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEE
Confidence 9999997 333 3333334556788999999999998877666 666766531111111
Q ss_pred ---------e----cceeEEEEEccCCCE--EEEEEecc-cCcEEEEEEccCCCeEEEEcCCceEEEEEcc-CCeeeEEe
Q psy11036 164 ---------T----GGLDVCIWDMLGGGK--LLHKFTCH-HKTVTSLCLASGGKRLISASLDHHAKIYEMV-NFSPVHTL 226 (239)
Q Consensus 164 ---------~----~~~~i~~~d~~~~~~--~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~ 226 (239)
+ +...|.+||+.+... ....+..+ ...+..++++ ++.++++...|+..+||.+. +++.+..+
T Consensus 279 ~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 279 AWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTV 357 (695)
T ss_dssp EETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEEC
T ss_pred ecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEe
Confidence 1 234577788765321 12222223 4567888888 77888899999988888665 46666666
Q ss_pred cC--CCCeeeeEecC
Q psy11036 227 DY--PSPVLSIDVSM 239 (239)
Q Consensus 227 ~~--~~~v~~~~~sp 239 (239)
.. .+.+..++++|
T Consensus 358 ~~~~~~~v~~~~~s~ 372 (695)
T 2bkl_A 358 QLPGVGAASNLMGLE 372 (695)
T ss_dssp CCSSSSEECCCBSCT
T ss_pred cCCCCeEEEEeecCC
Confidence 53 45566666654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-13 Score=105.53 Aligned_cols=182 Identities=15% Similarity=0.146 Sum_probs=118.6
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC---C--eEEEEeCCCCCceee
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD---K--TVNVYDTRSPDPVMS 80 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g--~v~vw~~~~~~~~~~ 80 (239)
.++.|++||+.+++... + . .+..++|+| +++.|+..+.+ + .|.+|++.+++....
T Consensus 41 ~~~~l~~~d~~~~~~~~-l--~----------------~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l 100 (347)
T 2gop_A 41 YENTIVIENLKNNARRF-I--E----------------NATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETLSSKKI 100 (347)
T ss_dssp EEEEEEEEETTTCCEEE-E--E----------------SCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred ccceEEEEeCCCCceEE-c--c----------------cCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCCceEEE
Confidence 36788999988776432 3 1 267899999 78888776643 3 478888887766555
Q ss_pred ecCCCCEEEEEEecCCcEEEEeC-C---------------------------CcEEEEEccCCCeEEEEEeccCCceEEE
Q psy11036 81 VNHGSPVESVLCLPSGGIFVTGG-G---------------------------LDVCIWDMLGGGKLLHKFTCHHKTVTSL 132 (239)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~l~~~~-~---------------------------~~i~~~d~~~~~~~~~~~~~~~~~i~~i 132 (239)
..... +..++|+|+++.|+.+. + ..|.+||+. .++.+..+.. . .+..+
T Consensus 101 ~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~-~~~~~~~l~~-~-~~~~~ 176 (347)
T 2gop_A 101 LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE-SEEVIEEFEK-P-RFSSG 176 (347)
T ss_dssp EEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT-TTEEEEEEEE-E-TTCEE
T ss_pred EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC-CCeEEeeecC-C-Ccccc
Confidence 44444 99999999999888775 2 458889987 5655345544 3 78899
Q ss_pred EEcCCCCEEEEEecCC-------eEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEE
Q psy11036 133 CLASGGKRLISASLDH-------HAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLIS 205 (239)
Q Consensus 133 ~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 205 (239)
+|+|+| .++++..++ ...|| .+| .++.. .+..+ ..+..+ +|||++|+.
T Consensus 177 ~~spdg-~~~~~~~~~~~~~~~~~~~l~-----------------~~d---~~~~~-~l~~~-~~~~~~--spdg~~l~~ 231 (347)
T 2gop_A 177 IWHRDK-IVVNVPHREIIPQYFKFWDIY-----------------IWE---DGKEE-KMFEK-VSFYAV--DSDGERILL 231 (347)
T ss_dssp EEETTE-EEEEEECCCSSCCSSCCEEEE-----------------EEE---TTEEE-EEEEE-ESEEEE--EECSSCEEE
T ss_pred cCCCCe-EEEEEecccccccccccccEE-----------------EeC---CCceE-EeccC-cceeeE--CCCCCEEEE
Confidence 999999 777775542 22333 333 22322 22223 444444 999999887
Q ss_pred EcCC--------ceEEEEEccCCeeeEEec-CCCCeee-eEec
Q psy11036 206 ASLD--------HHAKIYEMVNFSPVHTLD-YPSPVLS-IDVS 238 (239)
Q Consensus 206 ~s~d--------~~i~iwd~~~~~~~~~~~-~~~~v~~-~~~s 238 (239)
++.+ ..|.+|| +++...... +...+.+ +.|+
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s 272 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD 272 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET
T ss_pred EEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc
Confidence 7644 3688888 555443333 3456665 6664
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-12 Score=97.18 Aligned_cols=197 Identities=13% Similarity=0.136 Sum_probs=132.3
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec---
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN--- 82 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--- 82 (239)
..+.|+.||..+++. ..+.. . ..+.++++++ +++++++ . +..|.+||..+++......
T Consensus 33 ~~~~i~~~d~~~~~~-~~~~~-~--------------~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~ 93 (297)
T 3g4e_A 33 PAKKVCRWDSFTKQV-QRVTM-D--------------APVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVVLATVDN 93 (297)
T ss_dssp TTTEEEEEETTTCCE-EEEEC-S--------------SCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEEEEECCT
T ss_pred CCCEEEEEECCCCcE-EEEeC-C--------------CceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEEEEecCC
Confidence 346777777766543 22322 2 6789999999 6775554 3 5679999998776433222
Q ss_pred --CCCCEEEEEEecCCcEEEEeC-C---------CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEE-EEecCCe
Q psy11036 83 --HGSPVESVLCLPSGGIFVTGG-G---------LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLI-SASLDHH 149 (239)
Q Consensus 83 --~~~~v~~~~~~~~~~~l~~~~-~---------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~ 149 (239)
....+..++++|+|+++++.. . ..-.+|.+...++... +..+......++|+|+++.|+ +.+.++.
T Consensus 94 ~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~ 172 (297)
T 3g4e_A 94 DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYS 172 (297)
T ss_dssp TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTE
T ss_pred CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEecCCCCc
Confidence 123578899999999777653 1 2345666653343333 333445568999999998765 4555788
Q ss_pred EEEEEcc---cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEe
Q psy11036 150 AKIYEMT---LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226 (239)
Q Consensus 150 i~i~d~~---~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 226 (239)
|.+|++. +.. . ..+....+..+......+++.++|++.++....+.|..||..+++.+..+
T Consensus 173 i~~~~~d~~~G~~-~---------------~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 173 VDAFDYDLQTGQI-S---------------NRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp EEEEEECTTTCCE-E---------------EEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred EEEEeccCCCCcc-c---------------CcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence 9999873 110 0 01122222334456788999999998888878889999999999999999
Q ss_pred cCC-CCeeeeEec
Q psy11036 227 DYP-SPVLSIDVS 238 (239)
Q Consensus 227 ~~~-~~v~~~~~s 238 (239)
..+ ..+++++|.
T Consensus 237 ~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 237 KLPVDKTTSCCFG 249 (297)
T ss_dssp ECSSSBEEEEEEE
T ss_pred ECCCCCceEEEEe
Confidence 855 689999986
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-13 Score=100.12 Aligned_cols=174 Identities=7% Similarity=-0.025 Sum_probs=118.5
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
..+.++++.+ +++++++.. ++.|.+||.......... .....+..++++|++.++++.. ++.|.+|+.. ......
T Consensus 67 ~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-~~~~~~ 143 (270)
T 1rwi_B 67 YQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG-SKTQTV 143 (270)
T ss_dssp CSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTT-CCSCEE
T ss_pred CCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECC-CceeEe
Confidence 4577899999 677666655 889999998765443222 2336789999999998777665 6889999765 332222
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG 200 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~ 200 (239)
........+..++++++|+.+++...++.|.+||..+. ........+...+..++++++|
T Consensus 144 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~p~~i~~d~~g 203 (270)
T 1rwi_B 144 LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN--------------------NQVVLPFTDITAPWGIAVDEAG 203 (270)
T ss_dssp CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC--------------------CEEECCCSSCCSEEEEEECTTC
T ss_pred eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC--------------------ceEeecccCCCCceEEEECCCC
Confidence 22223346788999999987777767789999987721 1111111223567899999999
Q ss_pred CeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 201 KRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 201 ~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
.++++...++.|.+|+........... ....+.+++++|
T Consensus 204 ~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~ 243 (270)
T 1rwi_B 204 TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS 243 (270)
T ss_dssp CEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECT
T ss_pred CEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECC
Confidence 888888888999999986654333221 224677887764
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-12 Score=98.52 Aligned_cols=208 Identities=9% Similarity=-0.024 Sum_probs=141.0
Q ss_pred EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee----------CCCeEEEEeCCCCCce
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS----------YDKTVNVYDTRSPDPV 78 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~v~vw~~~~~~~~ 78 (239)
.|.++|..+++.+.++.... .+ .++++| +++.++.+. .++.|.++|..+.+.+
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~--------------~p--~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~ 110 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGF--------------LP--NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI 110 (373)
T ss_pred EEEEEECCCCeEEEEecCCC--------------CC--CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEE
Confidence 88999999999888887664 54 999999 777777664 3678999999988887
Q ss_pred eeecCC--------CCEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeEEEE-EeccCCceEEEEEcCCC-CEEEEEe
Q psy11036 79 MSVNHG--------SPVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKLLHK-FTCHHKTVTSLCLASGG-KRLISAS 145 (239)
Q Consensus 79 ~~~~~~--------~~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~-~~l~~~~ 145 (239)
..+... .....++++|+|++++++. ++.|.++| . +++.+.. +... . ++.+.|++ +.+++.+
T Consensus 111 ~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~-t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~ 184 (373)
T 2mad_H 111 ADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q-GGSSDDQLLSSP-T---CYHIHPGAPSTFYLLC 184 (373)
T ss_pred EEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-C-CCCEEeEEcCCC-c---eEEEEeCCCceEEEEc
Confidence 766322 2345899999999999876 36799999 7 7777766 5421 2 23344544 3455566
Q ss_pred cCCeEEEEEcccceEee----------------------------eecceeEEEEEccCCC-EEEEEEec----------
Q psy11036 146 LDHHAKIYEMTLKTVSS----------------------------FTGGLDVCIWDMLGGG-KLLHKFTC---------- 186 (239)
Q Consensus 146 ~d~~i~i~d~~~~~~~~----------------------------~~~~~~i~~~d~~~~~-~~~~~~~~---------- 186 (239)
.||.+.++|..++.... .+..+.+.+.|+.... ..+..+..
T Consensus 185 ~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~ 264 (373)
T 2mad_H 185 AQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW 264 (373)
T ss_pred CCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccce
Confidence 67777777763111100 0112346666664322 12222211
Q ss_pred ccCcEEEEEEccCCCeEEEEcC----------CceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 187 HHKTVTSLCLASGGKRLISASL----------DHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 187 h~~~v~~~~~s~~~~~l~s~s~----------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.......+.++|+++.|..+.. ++.|.++|..+++.+.++.......+++|+|
T Consensus 265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~ 327 (373)
T 2mad_H 265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQ 327 (373)
T ss_pred ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECC
Confidence 1122344788999888776543 3589999999999999999877889999986
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-12 Score=101.23 Aligned_cols=200 Identities=11% Similarity=0.065 Sum_probs=139.9
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee----------CCCeEEEEeCCCCCc
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS----------YDKTVNVYDTRSPDP 77 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~v~vw~~~~~~~ 77 (239)
+.|.++|..+++.+.++.... .+ .++++| +++.++++. .++.|.++|..+++.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~--------------~P--gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v 161 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGF--------------LP--HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP 161 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECS--------------SC--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CeEEEEECCCCEEEEEEECCC--------------CC--ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence 799999999999999998776 66 899999 566555554 467899999999998
Q ss_pred eeeecCC--------CCEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeEEEEEeccCC-------ceEEE-------
Q psy11036 78 VMSVNHG--------SPVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKLLHKFTCHHK-------TVTSL------- 132 (239)
Q Consensus 78 ~~~~~~~--------~~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~-------~i~~i------- 132 (239)
+..+... .....+.++|+|++++++. ++.|.+.|+. +.+.+.++..... .-.-+
T Consensus 162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~-t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~ 240 (426)
T 3c75_H 162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE-GKTFDRMLDVPDCYHIFPASPTVFYMNCRDGS 240 (426)
T ss_dssp EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEECCSEEEEEEEETTEEEEEETTSS
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECC-CCeEEEEEEcCCceeeccCCCcEEEEEcCCCC
Confidence 8776321 3456789999999999875 4789999998 6666666543110 00012
Q ss_pred ------------------------------EEcCCCCEEEEEecCCeEEEEEcccce-----------------------
Q psy11036 133 ------------------------------CLASGGKRLISASLDHHAKIYEMTLKT----------------------- 159 (239)
Q Consensus 133 ------------------------------~~~~~~~~l~~~~~d~~i~i~d~~~~~----------------------- 159 (239)
.+.+++..++.....+.+.+.|+....
T Consensus 241 ~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g 320 (426)
T 3c75_H 241 LARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGG 320 (426)
T ss_dssp EEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECS
T ss_pred EEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCC
Confidence 234444444444556677777763110
Q ss_pred ------------Eeeee----------cceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC-eEEEEc-CCceEEEE
Q psy11036 160 ------------VSSFT----------GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-RLISAS-LDHHAKIY 215 (239)
Q Consensus 160 ------------~~~~~----------~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s-~d~~i~iw 215 (239)
+.... +...|.+.|..+ .+.+..+.. ......+.|+|||+ +++++. .++.|.++
T Consensus 321 ~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 321 WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred ceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence 00000 124588888776 455555543 22477899999999 888777 59999999
Q ss_pred EccCCeeeEEec
Q psy11036 216 EMVNFSPVHTLD 227 (239)
Q Consensus 216 d~~~~~~~~~~~ 227 (239)
|+.+++.++++.
T Consensus 399 D~~t~kvv~tI~ 410 (426)
T 3c75_H 399 DAATGEELRSVD 410 (426)
T ss_dssp ETTTCCEEEEEC
T ss_pred ECCCCCEEEEec
Confidence 999999999973
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-13 Score=100.75 Aligned_cols=158 Identities=9% Similarity=0.007 Sum_probs=114.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
..+.++++.+ +++++++...++.|.+|+..+....... .....+.+++++++++++++.. ++.|.+||.. ......
T Consensus 108 ~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-~~~~~~ 185 (270)
T 1rwi_B 108 NYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE-SNNQVV 185 (270)
T ss_dssp SSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT-TCCEEE
T ss_pred CCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC-CCceEe
Confidence 5688999999 7788887777889999986655443322 2334678899999998777665 6899999987 443333
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG 200 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~ 200 (239)
....+...+..++++++|..+++...++.|.+|+..+.. .......+...+.+++++++|
T Consensus 186 ~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~--------------------~~~~~~~~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 186 LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT--------------------STVLPFTGLNTPLAVAVDSDR 245 (270)
T ss_dssp CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC--------------------CEECCCCSCSCEEEEEECTTC
T ss_pred ecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc--------------------ceeeccCCCCCceeEEECCCC
Confidence 222333668899999999777777778899999877211 111111223568899999999
Q ss_pred CeEEEEcCCceEEEEEccCCee
Q psy11036 201 KRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 201 ~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
+++++...++.|+++++...+.
T Consensus 246 ~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 246 TVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CEEEEEGGGTEEEEECCCGGGS
T ss_pred CEEEEECCCCEEEEEcCCCccc
Confidence 9889999999999999876544
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.9e-13 Score=111.02 Aligned_cols=195 Identities=7% Similarity=-0.007 Sum_probs=133.7
Q ss_pred EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCe----------------EEEEeC
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKT----------------VNVYDT 72 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~----------------v~vw~~ 72 (239)
.|++||+.+++.......+ ..+..++|+| +++.|+.++.++. |++|++
T Consensus 152 ~i~v~d~~tg~~~~~~~~~---------------~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l 215 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVLER---------------VKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVL 215 (710)
T ss_dssp EEEEEETTTTEEEEEEEEE---------------ECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEET
T ss_pred EEEEEECCCCCCCcccccC---------------cccceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEEC
Confidence 8999999999876543322 2366899999 7888888777765 999999
Q ss_pred CCCCce--eeec---CCCCEEEEEEecCCcEEEEeC------CCcEEEEEccC------CCeEEEEEeccCCceEEEEEc
Q psy11036 73 RSPDPV--MSVN---HGSPVESVLCLPSGGIFVTGG------GLDVCIWDMLG------GGKLLHKFTCHHKTVTSLCLA 135 (239)
Q Consensus 73 ~~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~------~~~i~~~d~~~------~~~~~~~~~~~~~~i~~i~~~ 135 (239)
.+++.. ..+. +...+..+.|+|+|++++... +..|.+||+.. .......+..+...+.. .|+
T Consensus 216 ~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s 294 (710)
T 2xdw_A 216 GTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVT 294 (710)
T ss_dssp TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEE
T ss_pred CCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEe
Confidence 887632 2222 345678999999999888764 35799999973 12245556666666654 488
Q ss_pred CCCCEEEEEecC----CeEEEEEcc-cc-----eE---------eee--e------------cceeEEEEEccCCCEEEE
Q psy11036 136 SGGKRLISASLD----HHAKIYEMT-LK-----TV---------SSF--T------------GGLDVCIWDMLGGGKLLH 182 (239)
Q Consensus 136 ~~~~~l~~~~~d----~~i~i~d~~-~~-----~~---------~~~--~------------~~~~i~~~d~~~~~~~~~ 182 (239)
|+|+.|+..+.+ +.|.+||+. .. .+ ..+ . +...+.+||+.+ ++...
T Consensus 295 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~~ 373 (710)
T 2xdw_A 295 NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLK 373 (710)
T ss_dssp EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEE
T ss_pred ccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEEE
Confidence 899887776653 368889886 21 11 111 1 112366777644 34556
Q ss_pred EEecccCcEEEEEEccCCCeEE-EEc---CCceEEEEEccCCe
Q psy11036 183 KFTCHHKTVTSLCLASGGKRLI-SAS---LDHHAKIYEMVNFS 221 (239)
Q Consensus 183 ~~~~h~~~v~~~~~s~~~~~l~-s~s---~d~~i~iwd~~~~~ 221 (239)
.+..+.+.+..+.++|+++.++ +.+ ..+.|+.||+.+++
T Consensus 374 ~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 374 IFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6666777889999999987665 322 35789999998876
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-13 Score=100.46 Aligned_cols=164 Identities=11% Similarity=0.086 Sum_probs=124.1
Q ss_pred CCEEEEeeCCCeEEEEeCCCCCceeeecCC--CCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccC-CceEE
Q psy11036 55 SDIVISGSYDKTVNVYDTRSPDPVMSVNHG--SPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHH-KTVTS 131 (239)
Q Consensus 55 ~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~i~~ 131 (239)
+++|++++.|+.|.+||.++++.+..+... ..+.++.+.|+|++++ +.++.|..||. +++.+.++..+. ..+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~--~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR--DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT--TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC--CCCEEEEEcCCCCccccc
Confidence 578999999999999999999999888533 4688999999999888 55778999998 477777777653 57889
Q ss_pred EEEcCCCCEEEEEec-CCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc
Q psy11036 132 LCLASGGKRLISASL-DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH 210 (239)
Q Consensus 132 i~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~ 210 (239)
+.+.++|+.+++.+. ++.+..+|..++.+..+. +... ...+......+++.++|+++++...++
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~---------~~~~------~~~~~~~~~~v~~~~~G~~lv~~~~~~ 146 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNMKGEVLSKTE---------FETG------IERPHAQFRQINKNKKGNYLVPLFATS 146 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECTTSCEEEEEE---------ECCS------CSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred cEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEe---------ccCC------CCcccccccCceECCCCCEEEEecCCC
Confidence 999999999999887 777777776544433331 0000 011222344567889999999999999
Q ss_pred eEEEEEccCCeeeEEecCCCCeeeeEe
Q psy11036 211 HAKIYEMVNFSPVHTLDYPSPVLSIDV 237 (239)
Q Consensus 211 ~i~iwd~~~~~~~~~~~~~~~v~~~~~ 237 (239)
.|..||.+ |+.+.++..+..+.++..
T Consensus 147 ~v~~~d~~-G~~~w~~~~~~~~~~~~~ 172 (276)
T 3no2_A 147 EVREIAPN-GQLLNSVKLSGTPFSSAF 172 (276)
T ss_dssp EEEEECTT-SCEEEEEECSSCCCEEEE
T ss_pred EEEEECCC-CCEEEEEECCCCccceeE
Confidence 99999998 999998886555555444
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-12 Score=97.51 Aligned_cols=171 Identities=12% Similarity=0.099 Sum_probs=117.9
Q ss_pred CCeEEEEEecCCCC-EEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSD-IVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~ 119 (239)
....+++|+| +++ +++++..++.|..|+..++ ...+ .+...+.+++++|+|+++++.. ++.|.+||.. +++..
T Consensus 28 ~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~-~g~~~ 103 (296)
T 3e5z_A 28 TWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP-GGEWE 103 (296)
T ss_dssp SSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST-TCCEE
T ss_pred ccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC-CCcEE
Confidence 6788999999 666 8888888999999999877 4444 5667799999999999888776 5889999986 44433
Q ss_pred EEEecc----CCceEEEEEcCCCCEEEEEec-----------------CCeEEEEEcccceEeeeecceeEEEEEccCCC
Q psy11036 120 HKFTCH----HKTVTSLCLASGGKRLISASL-----------------DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178 (239)
Q Consensus 120 ~~~~~~----~~~i~~i~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~ 178 (239)
...... ...+..++++|+|+++++... .+.|..++.. +
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~---------------------g 162 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD---------------------G 162 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT---------------------S
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC---------------------C
Confidence 322211 234567999999998887321 1233333222 2
Q ss_pred EEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc-CCee---eEEec-CCCCeeeeEecC
Q psy11036 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV-NFSP---VHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 179 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~-~~~~---~~~~~-~~~~v~~~~~sp 239 (239)
+ ...+..+......++|+|+++.|++.+.++.|++|++. +++. ...+. ....+.+++++|
T Consensus 163 ~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~ 227 (296)
T 3e5z_A 163 T-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA 227 (296)
T ss_dssp C-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT
T ss_pred C-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC
Confidence 2 22233455667899999999988888889999999996 5554 22222 233455666653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-12 Score=100.32 Aligned_cols=174 Identities=13% Similarity=0.050 Sum_probs=120.9
Q ss_pred CCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-----------CCcEEEEEccCCCeEEEEEecc------
Q psy11036 63 YDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-----------GLDVCIWDMLGGGKLLHKFTCH------ 125 (239)
Q Consensus 63 ~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~~~i~~~d~~~~~~~~~~~~~~------ 125 (239)
.|+.|.+||..+++.+..+...... .++++|++++++++. ++.|.+||+. +.+.+.++...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~-t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD-KLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT-TCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc-CCcEEEEEEcCcccccc
Confidence 4789999999999888777433334 899999999999874 3569999998 77777777632
Q ss_pred CCceEEEEEcCCCCEEEEEec--CCeEEEEEcc-cceEee-e---------------------ecceeEEEEEccCCCEE
Q psy11036 126 HKTVTSLCLASGGKRLISASL--DHHAKIYEMT-LKTVSS-F---------------------TGGLDVCIWDMLGGGKL 180 (239)
Q Consensus 126 ~~~i~~i~~~~~~~~l~~~~~--d~~i~i~d~~-~~~~~~-~---------------------~~~~~i~~~d~~~~~~~ 180 (239)
......++++|+|++|+++.. ++.|.+||+. .+.+.. + ++++.+..++....++.
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence 234677999999999998874 5899999998 544444 2 12233444544332221
Q ss_pred E------------------------------------EEEeccc-----------------------CcEEEEEEccCCC
Q psy11036 181 L------------------------------------HKFTCHH-----------------------KTVTSLCLASGGK 201 (239)
Q Consensus 181 ~------------------------------------~~~~~h~-----------------------~~v~~~~~s~~~~ 201 (239)
. ..+.... .....++|+|+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~ 266 (361)
T 2oiz_A 187 ASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG 266 (361)
T ss_dssp EEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTT
T ss_pred eeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCC
Confidence 1 0000000 0001268899988
Q ss_pred eEEEEcC-----------CceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 202 RLISASL-----------DHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 202 ~l~s~s~-----------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.++.+.. ++.|.+||+.+++.+.++.... +.+++|+|
T Consensus 267 ~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~sp 314 (361)
T 2oiz_A 267 RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQ 314 (361)
T ss_dssp EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEET
T ss_pred eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECC
Confidence 7766532 3589999999999999999666 99999987
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-12 Score=106.67 Aligned_cols=192 Identities=11% Similarity=0.092 Sum_probs=127.0
Q ss_pred CeEEEEEecCCCCEEEEeeCC-----CeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CC------------
Q psy11036 44 YVRAGTVSPVSSDIVISGSYD-----KTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GL------------ 105 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~------------ 105 (239)
.+..++|+| ++++|+.++.+ .+|++||+.+++.+........+..++|+|+ +.|+.+. ++
T Consensus 164 ~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 164 ALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 578999999 78887766543 3699999999987553222222357899999 8777766 43
Q ss_pred --cEEEEEccCCCe----EEEEEeccCCceEEEEEcCCCCEEEEEecCC-----eEEEEEcccc--e-Eeeee-------
Q psy11036 106 --DVCIWDMLGGGK----LLHKFTCHHKTVTSLCLASGGKRLISASLDH-----HAKIYEMTLK--T-VSSFT------- 164 (239)
Q Consensus 106 --~i~~~d~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~i~d~~~~--~-~~~~~------- 164 (239)
.|.+|++. +.. .+.....+...+..+.|+|||++|+..+.++ .|++||+... . ...+.
T Consensus 242 ~~~v~~~~lg-t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 320 (741)
T 1yr2_A 242 NQTVWLHRLG-TPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW 320 (741)
T ss_dssp CCEEEEEETT-SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE
T ss_pred CCEEEEEECC-CCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE
Confidence 28888886 332 2222222333588999999999988877554 8999998722 2 22221
Q ss_pred ------------------cceeEEEEEccCC-CEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc-CCeeeE
Q psy11036 165 ------------------GGLDVCIWDMLGG-GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV-NFSPVH 224 (239)
Q Consensus 165 ------------------~~~~i~~~d~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~-~~~~~~ 224 (239)
....|.+||+.+. .+....+..+...+..+.++ ++.++++...|+..+||.+. +++...
T Consensus 321 ~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 399 (741)
T 1yr2_A 321 DFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG 399 (741)
T ss_dssp EEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred EEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence 1234778887653 23344444555567777777 66778888889987777654 466666
Q ss_pred EecC--CCCeeeeEecC
Q psy11036 225 TLDY--PSPVLSIDVSM 239 (239)
Q Consensus 225 ~~~~--~~~v~~~~~sp 239 (239)
.+.. .+.+..++++|
T Consensus 400 ~l~~~~~~~v~~~~~s~ 416 (741)
T 1yr2_A 400 AVSLPGIGSASGLSGRP 416 (741)
T ss_dssp ECBCSSSCEEEEEECCB
T ss_pred eccCCCCeEEEEeecCC
Confidence 6663 45677777765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-11 Score=89.58 Aligned_cols=200 Identities=9% Similarity=0.097 Sum_probs=132.6
Q ss_pred CCCCCEEEEeeCCCcceeeeeeC-----CceeeccceeeccCCCCCeEEEEEecCC-CCEEEEeeCCCeEEEEeCCCCCc
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTN-----HTTIYKVPLMLYSTPQDYVRAGTVSPVS-SDIVISGSYDKTVNVYDTRSPDP 77 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~v~vw~~~~~~~ 77 (239)
+..++.|.+||..+++... +.. +. ..+.++++++ + ++++++.. ...|.+||.. ++.
T Consensus 42 ~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~--------------~~~~~i~~~~-~~g~l~v~~~-~~~l~~~d~~-g~~ 103 (314)
T 1pjx_A 42 GKPAGEILRIDLKTGKKTV-ICKPEVNGYG--------------GIPAGCQCDR-DANQLFVADM-RLGLLVVQTD-GTF 103 (314)
T ss_dssp TEECCEEEEECTTTCCEEE-EECCEETTEE--------------CCEEEEEECS-SSSEEEEEET-TTEEEEEETT-SCE
T ss_pred CCCCCEEEEEeCCCCcEEE-EEecccCCCC--------------CCCceEEEec-CCCcEEEEEC-CCCEEEEeCC-CCE
Confidence 4456889999987776533 222 33 6688999999 5 65555443 4479999988 665
Q ss_pred eee-ec-----CCCCEEEEEEecCCcEEEEeC-C---------------CcEEEEEccCCCeEEEEEeccCCceEEEEEc
Q psy11036 78 VMS-VN-----HGSPVESVLCLPSGGIFVTGG-G---------------LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 135 (239)
Q Consensus 78 ~~~-~~-----~~~~v~~~~~~~~~~~l~~~~-~---------------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~ 135 (239)
... .. ....+.+++++++|+++++.. + +.|..++.. ++.. .+..+......++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~-~~~~~~~~~~~i~~~ 180 (314)
T 1pjx_A 104 EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMI-QVDTAFQFPNGIAVR 180 (314)
T ss_dssp EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEE-EEEEEESSEEEEEEE
T ss_pred EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--CCEE-EeccCCCCcceEEEe
Confidence 433 21 123578999999998887765 3 345556543 3333 233334456889999
Q ss_pred ----CCCCEEEEE-ecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEeccc-CcEEEEEEccCCCeEEEEcC
Q psy11036 136 ----SGGKRLISA-SLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH-KTVTSLCLASGGKRLISASL 208 (239)
Q Consensus 136 ----~~~~~l~~~-~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~ 208 (239)
|+++.++.+ ..++.|.+||.+ ...+.. .+....+..+. ..+..++++++|+++++...
T Consensus 181 ~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~---------------~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 181 HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN---------------KKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE---------------EEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred cccCCCCCEEEEEECCCCeEEEEECCCCCcccc---------------ceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 999765554 467899999875 111100 01112223333 55788999999998888878
Q ss_pred CceEEEEEccCCeeeEEecCC-CCeeeeEecC
Q psy11036 209 DHHAKIYEMVNFSPVHTLDYP-SPVLSIDVSM 239 (239)
Q Consensus 209 d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp 239 (239)
++.|.+||..+++.+..+..+ ..+.+++|+|
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~ 277 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP 277 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSSCEEEEEECT
T ss_pred CCEEEEEcCCCCcEeEEEeCCCCCceeEEECC
Confidence 899999999878877777643 6788888865
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-12 Score=100.36 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=99.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHK 121 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~ 121 (239)
. |+.++| ++..|+++ .++.|++||+.+....... .+..++.++.+.+.. ++++..||.+.+||+. .+....
T Consensus 89 ~-V~~l~f---d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~-~~~~~~- 160 (388)
T 1xip_A 89 D-VIFVCF---HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLR-TKSTKQ- 160 (388)
T ss_dssp T-EEEEEE---ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETT-TCCEEE-
T ss_pred C-eeEEEE---CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEcc-CCcccc-
Confidence 5 999999 46788888 8899999999877655544 567778888777543 4444458999999998 444432
Q ss_pred EeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEE--EEEE------e---cccCc
Q psy11036 122 FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKL--LHKF------T---CHHKT 190 (239)
Q Consensus 122 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~------~---~h~~~ 190 (239)
+...|++++|+|+| ++.|..||++++|+.++ .+. ...+ . +|...
T Consensus 161 ---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~--------------------~~~~~k~~I~~Pp~~~~~~~~~~~ 215 (388)
T 1xip_A 161 ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRN--------------------GEMEKQFEFSLPSELEELPVEEYS 215 (388)
T ss_dssp ---EEESEEEEEECSSE--EEEEETTSCEEEEEEET--------------------TEEEEEEEECCCHHHHTSCTTTSE
T ss_pred ---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCC--------------------ccccccceecCCcccccccCCCee
Confidence 44689999999999 78899999999998872 221 2233 2 36788
Q ss_pred EEEEEEccCCCeEEEE
Q psy11036 191 VTSLCLASGGKRLISA 206 (239)
Q Consensus 191 v~~~~~s~~~~~l~s~ 206 (239)
|.++.|.++++++++-
T Consensus 216 V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 216 PLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEEESSSSEEEEEE
T ss_pred EEEEEEecCCeEEEEE
Confidence 9999999999998863
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-12 Score=98.62 Aligned_cols=207 Identities=10% Similarity=-0.046 Sum_probs=138.7
Q ss_pred EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee----------CCCeEEEEeCCCCCce
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS----------YDKTVNVYDTRSPDPV 78 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~v~vw~~~~~~~~ 78 (239)
.|.++|..+++.+.++.... .+ .+.++| +++.++++. .++.|.+||+.+++.+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~--------------~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv 109 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF--------------LS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI 109 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT--------------TC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred eEEEEECCCCeEEEEEeCCC--------------CC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence 89999999999999998876 66 799999 566665554 4689999999999999
Q ss_pred eeecCC--------CCEEEEEEecCCcEEEEeC---CCcEEE--EEccCCCeEEEEEec---------c---------CC
Q psy11036 79 MSVNHG--------SPVESVLCLPSGGIFVTGG---GLDVCI--WDMLGGGKLLHKFTC---------H---------HK 127 (239)
Q Consensus 79 ~~~~~~--------~~v~~~~~~~~~~~l~~~~---~~~i~~--~d~~~~~~~~~~~~~---------~---------~~ 127 (239)
.++... .....++++|+|++++++. +..+.+ +|+.. +.++.. + .+
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~~~~~~p~g~~~~~~~~~dg 185 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSASCFHIHPGAAATHYLGSCPA 185 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSSCCCCEEEETTEEECCCCTT
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCCceEEccCCCeEEEEEcCCC
Confidence 887422 3456899999999998875 356888 88752 222210 0 00
Q ss_pred ceEEEEE--------------------------cCCCCEEEEEecCCeEEEEEccc------------------------
Q psy11036 128 TVTSLCL--------------------------ASGGKRLISASLDHHAKIYEMTL------------------------ 157 (239)
Q Consensus 128 ~i~~i~~--------------------------~~~~~~l~~~~~d~~i~i~d~~~------------------------ 157 (239)
.+..+.. .+++..++..+. +.+.+.|+..
T Consensus 186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~ 264 (368)
T 1mda_H 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSA 264 (368)
T ss_dssp SCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred CEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccC
Confidence 0101110 233333344444 6676666631
Q ss_pred -----------ceEee-ee---c-----ceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCe-EEEEc-CCceEEEE
Q psy11036 158 -----------KTVSS-FT---G-----GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR-LISAS-LDHHAKIY 215 (239)
Q Consensus 158 -----------~~~~~-~~---~-----~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s-~d~~i~iw 215 (239)
+.+.. .. + ...+.++|..+ .+.+..+.... ....++|+|||+. +++.. .++.|.++
T Consensus 265 g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVI 342 (368)
T 1mda_H 265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIY 342 (368)
T ss_dssp SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred cceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEE
Confidence 01111 11 2 23456888876 44444444322 5788999999984 56666 59999999
Q ss_pred EccCCeeeEEecCCCCeeeeEecC
Q psy11036 216 EMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 216 d~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
|+.+++.+.++........+++.+
T Consensus 343 D~~t~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 343 DAASDQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp ESSSCEEEEECCCCSCCCEEECCC
T ss_pred ECCCCcEEEEEECCCCCCEEEeec
Confidence 999999999999777777877753
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-10 Score=94.18 Aligned_cols=186 Identities=12% Similarity=0.073 Sum_probs=128.1
Q ss_pred CCCEEEEeeCC--CcceeeeeeCCceeeccceeeccCCCCCeEEEEEe----cCCCCEEEEee-CCCeEEEEeCCCCCce
Q psy11036 6 PILIVALWDIP--SEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVS----PVSSDIVISGS-YDKTVNVYDTRSPDPV 78 (239)
Q Consensus 6 ~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~s~~-~dg~v~vw~~~~~~~~ 78 (239)
.++.|.+||+. +++.+.++... .....++|+ | ++++++++. .++++.++|..+.+.+
T Consensus 216 ~dg~V~viD~~~~t~~~v~~i~~G---------------~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~ 279 (567)
T 1qks_A 216 RDGKVNMIDLWMKEPTTVAEIKIG---------------SEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPK 279 (567)
T ss_dssp TTSEEEEEETTSSSCCEEEEEECC---------------SEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred CCCeEEEEECCCCCCcEeEEEecC---------------CCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEE
Confidence 36899999996 88888888775 346799999 6 566665554 5699999999999888
Q ss_pred eeecC------------CCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeE-EEEEeccCCceEEEEEcCCCCEEEE
Q psy11036 79 MSVNH------------GSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKL-LHKFTCHHKTVTSLCLASGGKRLIS 143 (239)
Q Consensus 79 ~~~~~------------~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~ 143 (239)
..+.. ...+..+..++++..+++.. .|.|.++|....... +..+ ........+.|+|+|+++++
T Consensus 280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~v 358 (567)
T 1qks_A 280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFIT 358 (567)
T ss_dssp EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEE
T ss_pred EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEE
Confidence 76631 12678888898877665554 599999998733222 2223 23456778999999998876
Q ss_pred Ee-cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEe-----cccCcEEEEEEccCC-CeEEEEc-CCceEEEE
Q psy11036 144 AS-LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFT-----CHHKTVTSLCLASGG-KRLISAS-LDHHAKIY 215 (239)
Q Consensus 144 ~~-~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----~h~~~v~~~~~s~~~-~~l~s~s-~d~~i~iw 215 (239)
+. .++.|.++|+. +++.+..+. .|.+.-..+ ++|++ ..++++. .++.|.++
T Consensus 359 a~~~sn~V~ViD~~--------------------t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvi 417 (567)
T 1qks_A 359 AANARNKLVVIDTK--------------------EGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALI 417 (567)
T ss_dssp EEGGGTEEEEEETT--------------------TTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEE
T ss_pred EeCCCCeEEEEECC--------------------CCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEe
Confidence 65 57889999988 223322222 243222222 67874 4445554 57899999
Q ss_pred EccC-------CeeeEEecCC
Q psy11036 216 EMVN-------FSPVHTLDYP 229 (239)
Q Consensus 216 d~~~-------~~~~~~~~~~ 229 (239)
|..+ ++.++++...
T Consensus 418 d~~~~~~~~~~~kvv~~i~~~ 438 (567)
T 1qks_A 418 GTDPEGHPDNAWKILDSFPAL 438 (567)
T ss_dssp ECCTTTCTTTBTSEEEEEECS
T ss_pred cCCCCCCccccCEEEEEEecC
Confidence 9987 7788888743
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-11 Score=94.39 Aligned_cols=193 Identities=9% Similarity=-0.048 Sum_probs=119.7
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCC--eEEEEeCCCCCceeee-
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDK--TVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~v~vw~~~~~~~~~~~- 81 (239)
..++.|++||.++++........ .... ++|++ +++.|+++..++ .|.+++...+.....+
T Consensus 149 ~~~~~I~~id~~~g~~~~~~~~~---------------~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g 211 (409)
T 3hrp_A 149 RDDPRVRLISVDDNKVTTVHPGF---------------KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPTRIG 211 (409)
T ss_dssp TTTTEEEEEETTTTEEEEEEETC---------------CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE
T ss_pred cCCCcEEEEECCCCEEEEeeccC---------------CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeEEee
Confidence 34577888888766655444433 2333 99999 777777777655 7999998766554444
Q ss_pred ---c-CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEE-----eccCCc--eEEEEEcCC-CCEEEEEecCC
Q psy11036 82 ---N-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKF-----TCHHKT--VTSLCLASG-GKRLISASLDH 148 (239)
Q Consensus 82 ---~-~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~-----~~~~~~--i~~i~~~~~-~~~l~~~~~d~ 148 (239)
. ....+.+++++|++..|+++. ++.|..||.. .+. ...+ .++... ...++|+|+ +.++++-..++
T Consensus 212 ~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~-~~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 212 QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVK-TQE-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETT-TCC-EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECC-CCC-EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 2 446678899999444444454 6889999987 333 2222 112222 238999995 55666666778
Q ss_pred eEEEEEcccceEeeeecceeEEEEEccCCCEEEEE-EecccCcEEEEEEccCCCeEEEEc-CCceEEEEEccCCeeeE
Q psy11036 149 HAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHK-FTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMVNFSPVH 224 (239)
Q Consensus 149 ~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~ 224 (239)
.|+.|+..+. +..+.|.. ...+..-.. ....-.....++++|+|+++++-+ .++.|+.|++.+++...
T Consensus 290 ~I~~~~~~g~-~~~~~g~~-------~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~ 359 (409)
T 3hrp_A 290 SVYKITPDGE-CEWFCGSA-------TQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST 359 (409)
T ss_dssp EEEEECTTCC-EEEEEECT-------TCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred EEEEEecCCC-EEEEEeCC-------CCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence 8999887733 11111100 000000000 000123478999999999888888 89999999987887543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-10 Score=86.48 Aligned_cols=171 Identities=8% Similarity=-0.028 Sum_probs=119.5
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee--c-CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--N-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~ 118 (239)
..+.++++.+ ++.++++...++.|..|+.. ++. ..+ . ....+..+++.+++.++++.. ++.|..||.. ....
T Consensus 57 ~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~ 132 (299)
T 2z2n_A 57 AKVMCLTISS-DGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GKIR 132 (299)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE
T ss_pred CceeeEEECC-CCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CCEE
Confidence 6789999999 78888877778899999976 332 222 2 455789999999998888776 6889999883 3322
Q ss_pred EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc
Q psy11036 119 LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS 198 (239)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~ 198 (239)
..........+..+++.++|+.+++...++.|..||..++. .......+...+..+++++
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~--------------------~~~~~~~~~~~~~~i~~~~ 192 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGDI--------------------TEFKIPTPASGPVGITKGN 192 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--------------------EEEECSSTTCCEEEEEECT
T ss_pred EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcE--------------------EEeeCCCCCCcceeEEECC
Confidence 22223345578999999999877777667888888764111 1111122345678999999
Q ss_pred CCCeEEEEcCCceEEEEEccCCeeeEEec---CCCCeeeeEecC
Q psy11036 199 GGKRLISASLDHHAKIYEMVNFSPVHTLD---YPSPVLSIDVSM 239 (239)
Q Consensus 199 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp 239 (239)
+|+++++...++.|.+||. +++... +. ....+.+++++|
T Consensus 193 ~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~ 234 (299)
T 2z2n_A 193 DDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGA 234 (299)
T ss_dssp TSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECS
T ss_pred CCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECC
Confidence 9998888777899999999 666433 32 235677777654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-10 Score=87.05 Aligned_cols=206 Identities=11% Similarity=0.073 Sum_probs=128.9
Q ss_pred CCEEEEeeCCCcceeeeeeCC-ceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC--CCeEEEEeCCCCCceee-ec
Q psy11036 7 ILIVALWDIPSEAQVSTFTNH-TTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY--DKTVNVYDTRSPDPVMS-VN 82 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~v~vw~~~~~~~~~~-~~ 82 (239)
++.|.+||..+.+.+.++... ... . ........++|+| ++++|+++.. +..|.++| .+++.+.. +.
T Consensus 96 ~~~v~viD~~t~~~~~~i~~~~~~~-------~-~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~ 165 (373)
T 2mad_H 96 TDYVEVFDPVTFLPIADIELPDAPR-------F-DVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS 165 (373)
T ss_pred CCeEEEEECCCCcEEEEEECCCccc-------c-ccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC
Confidence 578999999998888777543 100 0 0002345899999 7888877664 57899999 99998888 65
Q ss_pred CCCCEEEEEEecCCc-EEEEe-CCCcEEEEEccCCCeEEEEEe-----ccCCce-EEEEEcCCCCEEEEEecCCeEEEEE
Q psy11036 83 HGSPVESVLCLPSGG-IFVTG-GGLDVCIWDMLGGGKLLHKFT-----CHHKTV-TSLCLASGGKRLISASLDHHAKIYE 154 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~-~l~~~-~~~~i~~~d~~~~~~~~~~~~-----~~~~~i-~~i~~~~~~~~l~~~~~d~~i~i~d 154 (239)
.... +.+.|.+. .+++. .||.+.++|. .++...... ....++ ....+.+++..++..+.++.+.+.|
T Consensus 166 ~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~--~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid 240 (373)
T 2mad_H 166 SPTC---YHIHPGAPSTFYLLCAQGGLAKTDH--AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQAD 240 (373)
T ss_pred CCce---EEEEeCCCceEEEEcCCCCEEEEEC--CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEe
Confidence 4443 44556553 33333 3899999998 333332211 111221 2234555554444444566777777
Q ss_pred cccc---eEe----------------------ee----------e----------cceeEEEEEccCCCEEEEEEecccC
Q psy11036 155 MTLK---TVS----------------------SF----------T----------GGLDVCIWDMLGGGKLLHKFTCHHK 189 (239)
Q Consensus 155 ~~~~---~~~----------------------~~----------~----------~~~~i~~~d~~~~~~~~~~~~~h~~ 189 (239)
+... .+. .+ . +...|.++|..+ .+.+..+.. ..
T Consensus 241 ~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~-g~ 318 (373)
T 2mad_H 241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISL-GH 318 (373)
T ss_pred ccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEEC-CC
Confidence 6411 000 00 0 123577788765 566666643 33
Q ss_pred cEEEEEEccCCC-eEEEEc-CCceEEEEEccCCeeeEE-ecCC
Q psy11036 190 TVTSLCLASGGK-RLISAS-LDHHAKIYEMVNFSPVHT-LDYP 229 (239)
Q Consensus 190 ~v~~~~~s~~~~-~l~s~s-~d~~i~iwd~~~~~~~~~-~~~~ 229 (239)
....+.|+|||+ +++++. .++.|.++|+.+++.+.+ ....
T Consensus 319 ~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG 361 (373)
T 2mad_H 319 DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELG 361 (373)
T ss_pred CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCC
Confidence 578999999999 777777 589999999999999998 4433
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-10 Score=83.93 Aligned_cols=169 Identities=8% Similarity=-0.041 Sum_probs=118.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee--cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~ 119 (239)
..+.++++.+ ++.++++...++.|.+||. +++..... .....+..+++.+++..+++.. ++.|..||. .++..
T Consensus 99 ~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~--~g~~~ 174 (299)
T 2z2n_A 99 SAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE--SGDIT 174 (299)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT--TCCEE
T ss_pred CCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC--CCcEE
Confidence 5788999999 7888887777889999998 55543322 2446789999999998888776 588999998 33333
Q ss_pred EE-EeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc
Q psy11036 120 HK-FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS 198 (239)
Q Consensus 120 ~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~ 198 (239)
.. .......+..++++++|+.+++...++.|.+||..++ ........+...+.++++++
T Consensus 175 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--------------------~~~~~~~~~~~~~~~i~~~~ 234 (299)
T 2z2n_A 175 EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGE--------------------ITEFKIPTPNARPHAITAGA 234 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC--------------------EEEEECSSTTCCEEEEEECS
T ss_pred EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCc--------------------EEEEECCCCCCCceeEEECC
Confidence 22 2334456889999999987777666788888876411 11111123446788999999
Q ss_pred CCCeEEEEcCCceEEEEEccCCeeeEEec---CCCCeeeeEe
Q psy11036 199 GGKRLISASLDHHAKIYEMVNFSPVHTLD---YPSPVLSIDV 237 (239)
Q Consensus 199 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~ 237 (239)
+|+++++...++.|..||. +++. ..+. ....+.++++
T Consensus 235 ~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~ 274 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF 274 (299)
T ss_dssp TTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE
T ss_pred CCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe
Confidence 9998777777899999998 4543 3332 2345666665
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-10 Score=85.41 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=125.6
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecC---
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNH--- 83 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~--- 83 (239)
++.|..||.++++.. .+.. . ..+.++++++ +++++++. .+ .|.+||..+++.......
T Consensus 70 ~~~i~~~d~~~~~~~-~~~~-~--------------~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~ 130 (326)
T 2ghs_A 70 ERELHELHLASGRKT-VHAL-P--------------FMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLHAELESD 130 (326)
T ss_dssp GTEEEEEETTTTEEE-EEEC-S--------------SCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEEECSSTT
T ss_pred CCEEEEEECCCCcEE-EEEC-C--------------CcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCC
Confidence 467777777665432 2322 2 5789999999 67766654 44 499999988775433221
Q ss_pred --CCCEEEEEEecCCcEEEEeCC-----CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEE-ecCCeEEEEEc
Q psy11036 84 --GSPVESVLCLPSGGIFVTGGG-----LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA-SLDHHAKIYEM 155 (239)
Q Consensus 84 --~~~v~~~~~~~~~~~l~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~ 155 (239)
...+..++++|+|+++++..+ ....+|.+. .++.. .+..+......++|+|+++.++.+ +.++.|.+|++
T Consensus 131 ~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~ 208 (326)
T 2ghs_A 131 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPL 208 (326)
T ss_dssp CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEc
Confidence 235889999999997775532 234455544 44433 233333456789999999876555 45688888887
Q ss_pred c--cc-eEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCC-CC
Q psy11036 156 T--LK-TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYP-SP 231 (239)
Q Consensus 156 ~--~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~~ 231 (239)
+ .. .+. ..+....+.........+++.++|.+.++...++.|..||. +++.+..+..+ ..
T Consensus 209 ~~~~Gl~~~---------------~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~ 272 (326)
T 2ghs_A 209 DARTGLPTG---------------KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQ 272 (326)
T ss_dssp CTTTCCBSS---------------CCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSB
T ss_pred ccccCCccc---------------CceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCC
Confidence 4 11 000 01112222223345678999999998887767789999998 67777777744 46
Q ss_pred eeeeEec
Q psy11036 232 VLSIDVS 238 (239)
Q Consensus 232 v~~~~~s 238 (239)
+.+++|+
T Consensus 273 ~~~~af~ 279 (326)
T 2ghs_A 273 TTCPAFI 279 (326)
T ss_dssp EEEEEEE
T ss_pred cEEEEEe
Confidence 8899886
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.44 E-value=7.1e-11 Score=89.43 Aligned_cols=155 Identities=9% Similarity=0.122 Sum_probs=108.2
Q ss_pred CCeEEEEEecCCCCEEEEeeCC---------------CeEEEEeCCCCCceeeecCCCCEEEEEEe----cCCcEEEEeC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYD---------------KTVNVYDTRSPDPVMSVNHGSPVESVLCL----PSGGIFVTGG 103 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~d---------------g~v~vw~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~ 103 (239)
..+.++++++ +++++++...+ +.|..++.. ++.............++++ |+++.++++.
T Consensus 117 ~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~ 194 (314)
T 1pjx_A 117 QGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE 194 (314)
T ss_dssp BCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred cCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEE
Confidence 3578999999 77877776654 567777765 5543333444556889999 9997665553
Q ss_pred --CCcEEEEEccCCCe-----EEEEEeccC-CceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEcc
Q psy11036 104 --GLDVCIWDMLGGGK-----LLHKFTCHH-KTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDML 175 (239)
Q Consensus 104 --~~~i~~~d~~~~~~-----~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~ 175 (239)
++.|.+|++...++ ....+..+. ..+..++++++|+.+++...++.|.+||.+
T Consensus 195 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~------------------- 255 (314)
T 1pjx_A 195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD------------------- 255 (314)
T ss_dssp TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT-------------------
T ss_pred CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC-------------------
Confidence 68899999762233 222233333 567889999999988888788899998876
Q ss_pred CCCEEEEEEecccCcEEEEEEccCCC-eEEEEcCCceEEEEEccC
Q psy11036 176 GGGKLLHKFTCHHKTVTSLCLASGGK-RLISASLDHHAKIYEMVN 219 (239)
Q Consensus 176 ~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~i~iwd~~~ 219 (239)
+++....+..+...+.+++|+|+++ ++++...++.|..|++..
T Consensus 256 -~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 256 -GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp -CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred -CCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 1222333344557789999999999 445566678999999864
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-10 Score=85.70 Aligned_cols=193 Identities=11% Similarity=0.119 Sum_probs=120.7
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec---
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN--- 82 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--- 82 (239)
.++.|..|+. +++ ...+..+. ..+..+++++ +++++++...++.|.+|+.. ++......
T Consensus 65 ~~~~i~~~~~-~g~-~~~~~~~~--------------~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~ 126 (305)
T 3dr2_A 65 VGRRVLGWRE-DGT-VDVLLDAT--------------AFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA 126 (305)
T ss_dssp TTTEEEEEET-TSC-EEEEEESC--------------SCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECEET
T ss_pred CCCEEEEEeC-CCC-EEEEeCCC--------------CccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEEEEeccC
Confidence 3567777876 444 34444444 6789999999 78877665566889999986 55332221
Q ss_pred --CCCCEEEEEEecCCcEEEE----eC--------------CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEE
Q psy11036 83 --HGSPVESVLCLPSGGIFVT----GG--------------GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLI 142 (239)
Q Consensus 83 --~~~~v~~~~~~~~~~~l~~----~~--------------~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 142 (239)
....+..++++|+|.++++ +. .+.|..+|.. .++..... .......++|+|+++.|+
T Consensus 127 ~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~-~g~~~~~~--~~~~p~gl~~spdg~~ly 203 (305)
T 3dr2_A 127 GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD-GSPLQRMA--DLDHPNGLAFSPDEQTLY 203 (305)
T ss_dssp TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-SCCCEEEE--EESSEEEEEECTTSSEEE
T ss_pred CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC-CCcEEEEe--cCCCCcceEEcCCCCEEE
Confidence 1234678999999998886 22 1346666654 33333222 344568899999999887
Q ss_pred EEecC------CeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEE
Q psy11036 143 SASLD------HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 143 ~~~~d------~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
.+... +.|.+|++....+... +.. ..........+++.++|++.++. .+ .|.+|+
T Consensus 204 v~~~~~~~~~~~~i~~~~~~~~~l~~~---------------~~~--~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~ 264 (305)
T 3dr2_A 204 VSQTPEQGHGSVEITAFAWRDGALHDR---------------RHF--ASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFD 264 (305)
T ss_dssp EEECCC---CCCEEEEEEEETTEEEEE---------------EEE--ECCSSSCCCSEEECTTSCEEECC-SS-EEEEEC
T ss_pred EEecCCcCCCCCEEEEEEecCCCccCC---------------eEE--EECCCCCCCeEEECCCCCEEEec-CC-cEEEEC
Confidence 77665 6888888762111100 000 01112334567888888854443 44 488888
Q ss_pred ccCCeeeEEecCCCCeeeeEecC
Q psy11036 217 MVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
. .++.+..+..+..+.+++|+|
T Consensus 265 ~-~g~~~~~~~~~~~~~~~~f~~ 286 (305)
T 3dr2_A 265 S-DGQLLGHIPTPGTASNCTFDQ 286 (305)
T ss_dssp T-TSCEEEEEECSSCCCEEEECT
T ss_pred C-CCCEEEEEECCCceeEEEEeC
Confidence 7 577777777655677887753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-09 Score=80.44 Aligned_cols=172 Identities=10% Similarity=-0.025 Sum_probs=118.3
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee-ec-CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS-VN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~ 119 (239)
..+.++++.+ +++++++...++.|..+|.. ++.... +. ....+..+++.+++.++++.. ++.|..+|.. ++..
T Consensus 62 ~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~ 137 (300)
T 2qc5_A 62 AKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GTIY 137 (300)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEE
T ss_pred CcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC--CCEE
Confidence 5788999998 77887777667899999987 554322 12 346789999999999888776 6889999885 3332
Q ss_pred -EEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc
Q psy11036 120 -HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS 198 (239)
Q Consensus 120 -~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~ 198 (239)
..+......+..+++.++++.+++...++.|..+|..++ ........+...+..+++.+
T Consensus 138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~--------------------~~~~~~~~~~~~~~~i~~d~ 197 (300)
T 2qc5_A 138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGK--------------------LEEYPLPTNAAAPVGITSGN 197 (300)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC--------------------EEEEECSSTTCCEEEEEECT
T ss_pred EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCc--------------------EEEeeCCCCCCCcceEEECC
Confidence 222334457899999999996666666778888876511 11111122345688999999
Q ss_pred CCCeEEEEcCCceEEEEEccCCeeeEE-ec-CCCCeeeeEecC
Q psy11036 199 GGKRLISASLDHHAKIYEMVNFSPVHT-LD-YPSPVLSIDVSM 239 (239)
Q Consensus 199 ~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~-~~~~v~~~~~sp 239 (239)
+|++.++....+.|.+|+. +++.... +. ....+.++++.|
T Consensus 198 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~ 239 (300)
T 2qc5_A 198 DGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK 239 (300)
T ss_dssp TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS
T ss_pred CCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC
Confidence 9988887777888999998 5554332 22 234566776653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-09 Score=80.89 Aligned_cols=171 Identities=8% Similarity=-0.036 Sum_probs=116.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee-ec-CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS-VN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~ 119 (239)
..+.++++.+ +++++++...++.|..++.. ++.... +. ....+..+++.++++++++.. ++.|..++.. ++..
T Consensus 104 ~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~ 179 (300)
T 2qc5_A 104 SGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT--GKLE 179 (300)
T ss_dssp CCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEE
T ss_pred CCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC--CcEE
Confidence 5688999998 78888877768899999987 554422 22 346789999999999777666 5789999883 3333
Q ss_pred E-EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc
Q psy11036 120 H-KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS 198 (239)
Q Consensus 120 ~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~ 198 (239)
. ....+...+..+++.++|+.+++....+.|.+|+..++ ........+...+.++++.+
T Consensus 180 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~--------------------~~~~~~~~~~~~~~~i~~d~ 239 (300)
T 2qc5_A 180 EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE--------------------ISEYDIPTPNARPHAITAGK 239 (300)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC--------------------EEEEECSSTTCCEEEEEECS
T ss_pred EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCc--------------------EEEEECCCCCCCceEEEECC
Confidence 2 22234456889999999987776666778888876511 11111123345688999999
Q ss_pred CCCeEEEEcCCceEEEEEccCCeeeE-Eec-CCCCeeeeEec
Q psy11036 199 GGKRLISASLDHHAKIYEMVNFSPVH-TLD-YPSPVLSIDVS 238 (239)
Q Consensus 199 ~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~-~~~~v~~~~~s 238 (239)
+|++.++...++.|..|+. +++... .+. ....+.++++.
T Consensus 240 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~ 280 (300)
T 2qc5_A 240 NSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFG 280 (300)
T ss_dssp TTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEEC
T ss_pred CCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeC
Confidence 9998887777899999998 444332 122 23456666654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.1e-10 Score=81.55 Aligned_cols=169 Identities=12% Similarity=-0.005 Sum_probs=117.3
Q ss_pred CeEEEEEecCCCCEEEEeeC--CCeEEEEeCCCCCceeeecCCC--CEEEEEEecCCcEEEEeC--CCcEEEEEccCCCe
Q psy11036 44 YVRAGTVSPVSSDIVISGSY--DKTVNVYDTRSPDPVMSVNHGS--PVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGK 117 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~--dg~v~vw~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~ 117 (239)
....++|++ ++.++++.+. ++.|++.|+.+++.+..+.... ....+++. +..++.+. ++.+.++|.. +.+
T Consensus 22 f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~-t~~ 97 (266)
T 2iwa_A 22 FTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR-TLS 97 (266)
T ss_dssp CEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT-TTE
T ss_pred CcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC-CCc
Confidence 368999998 5655555543 5799999999999888874322 33345554 55565555 7999999998 788
Q ss_pred EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecc-----cCcEE
Q psy11036 118 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH-----HKTVT 192 (239)
Q Consensus 118 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h-----~~~v~ 192 (239)
.+.++..... ....+++||+.++++..++.|.++|.. +.+....+.-- -..+.
T Consensus 98 v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~--------------------t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 98 NIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPH--------------------TFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp EEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTT--------------------TCCEEEEEECEETTEECCCEE
T ss_pred EEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECC--------------------CCcEEEEEEECCCCcccccce
Confidence 8888864311 124456688777777678889988887 22222222211 12356
Q ss_pred EEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCC--------------CCeeeeEecC
Q psy11036 193 SLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYP--------------SPVLSIDVSM 239 (239)
Q Consensus 193 ~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~sp 239 (239)
.+.|. +|+..+....++.|.+.|..+++.+..+... ...+.++|+|
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~ 215 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ 215 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC
Confidence 77887 7776666667899999999999999998743 3568888876
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.4e-10 Score=87.01 Aligned_cols=210 Identities=11% Similarity=0.047 Sum_probs=132.3
Q ss_pred CCCCCCEEEEeeCCCc----ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC------CeEEEEeC
Q psy11036 3 HDLPILIVALWDIPSE----AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD------KTVNVYDT 72 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~v~vw~~ 72 (239)
+...++.|+++|+.+. +..++++..+...+ .....-..+...| ++ +++++..+ +.+.++|.
T Consensus 101 ~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~-------~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 101 PGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKV-------SGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp EBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHH-------HCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCCCeEEEEECCCCCCCceeeeeechhhcccc-------cCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEEC
Confidence 3456689999998754 55555531000000 0002455677888 66 77776655 78999999
Q ss_pred CCCCceeeecCC----CCEEEEEEecCCcEEEEeC--------------------CCcEEEEEccCCCeEEEEEeccC--
Q psy11036 73 RSPDPVMSVNHG----SPVESVLCLPSGGIFVTGG--------------------GLDVCIWDMLGGGKLLHKFTCHH-- 126 (239)
Q Consensus 73 ~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~--------------------~~~i~~~d~~~~~~~~~~~~~~~-- 126 (239)
++.+.+.++... .--..+.|+|+++.++++. +.+|.+||+. .++.+.++....
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~-~~k~~~tI~vg~~g 250 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR-KRKRIHSLTLGEEN 250 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-TTEEEEEEESCTTE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC-CCcEeeEEecCCCC
Confidence 999998888422 2234588899999998884 5889999998 677777776431
Q ss_pred CceEEEEE--cCCCCEEEEEe------cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEe-------cccCcE
Q psy11036 127 KTVTSLCL--ASGGKRLISAS------LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFT-------CHHKTV 191 (239)
Q Consensus 127 ~~i~~i~~--~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------~h~~~v 191 (239)
.....+.| +|+++++.+++ .+++|.+|..+.... ..+.+.|+.. .+....+. +-....
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~------~~~~vIdi~~-~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW------NAEKVIEIPA-EPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE------EEEEEEEECC-EECCSSCCGGGGGGTEECCCC
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce------eEEEEEeCCC-ccccccccccccccccCCCce
Confidence 23445656 99999877776 466888777652110 0122233221 00000000 002346
Q ss_pred EEEEEccCCCeEEEEc-CCceEEEEEcc---CCeeeEEecCC
Q psy11036 192 TSLCLASGGKRLISAS-LDHHAKIYEMV---NFSPVHTLDYP 229 (239)
Q Consensus 192 ~~~~~s~~~~~l~s~s-~d~~i~iwd~~---~~~~~~~~~~~ 229 (239)
..+.+||||++|.++. ..+.|.+||+. +.+.+..+...
T Consensus 324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tG 365 (462)
T 2ece_A 324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLG 365 (462)
T ss_dssp CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECB
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeC
Confidence 7889999999987665 47899999985 34666666643
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-08 Score=74.80 Aligned_cols=173 Identities=8% Similarity=-0.011 Sum_probs=109.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCCCEEEEEEecCCcEEEEeC-C---CcEEEEEccCCCe
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-G---LDVCIWDMLGGGK 117 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~---~~i~~~d~~~~~~ 117 (239)
.....+++++.++.++++-...+.|.++++.......... .......++++|++..++.+. . +.|..+++. . .
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g-~ 156 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-G-T 156 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-S-C
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-C-C
Confidence 4678999998445566666667899999987543322222 225678999999655555444 2 578888876 2 2
Q ss_pred EEEEE-eccCCceEEEEEcCCCCEEEEE-ecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEE
Q psy11036 118 LLHKF-TCHHKTVTSLCLASGGKRLISA-SLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLC 195 (239)
Q Consensus 118 ~~~~~-~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~ 195 (239)
....+ .........+++++++..|..+ ...+.|..+|..+... ...... ......++
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--------------------~~~~~~-~~~P~gi~ 215 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR--------------------RKVLEG-LQYPFAVT 215 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE--------------------EEEEEC-CCSEEEEE
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce--------------------EEEecC-CCCceEEE
Confidence 22222 2233457899999987665544 4567888888872111 111111 12234566
Q ss_pred EccCCCeEEEEcCCceEEEEEccCCeeeEEecCCC--CeeeeEecC
Q psy11036 196 LASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPS--PVLSIDVSM 239 (239)
Q Consensus 196 ~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~sp 239 (239)
.. ++.++++....+.|..+|..+++.+..+.... ....+++.|
T Consensus 216 ~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 216 SY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp EE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecC
Confidence 54 44455555567899999999999999987432 467777765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.32 E-value=4.5e-09 Score=79.15 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=104.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKF 122 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~ 122 (239)
.-..+..|+|+++.++++...++.|..||..+++. ..+.....+.+++++|+++++++. ++.|.+||.. +++.....
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~-~g~~~~~~ 89 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATI-GTKFCALNWK-EQSAVVLA 89 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEE-TTEEEEEETT-TTEEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEE-CCeEEEEECC-CCcEEEEE
Confidence 45678999996667778888889999999987764 445566789999999999965554 6789999987 45433222
Q ss_pred ec----cCCceEEEEEcCCCCEEEEEecC---------CeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccC
Q psy11036 123 TC----HHKTVTSLCLASGGKRLISASLD---------HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHK 189 (239)
Q Consensus 123 ~~----~~~~i~~i~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~ 189 (239)
.. ....+..++++|+|+++++...+ ..-.+|.+. . .++... +..+..
T Consensus 90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d-----------------~--~g~~~~-~~~~~~ 149 (297)
T 3g4e_A 90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLF-----------------P--DHHVKK-YFDQVD 149 (297)
T ss_dssp ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEEC-----------------T--TSCEEE-EEEEES
T ss_pred ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEE-----------------C--CCCEEE-Eeeccc
Confidence 21 12357889999999966654322 222333332 1 122111 122234
Q ss_pred cEEEEEEccCCCeE-EEEcCCceEEEEEc--cCCee
Q psy11036 190 TVTSLCLASGGKRL-ISASLDHHAKIYEM--VNFSP 222 (239)
Q Consensus 190 ~v~~~~~s~~~~~l-~s~s~d~~i~iwd~--~~~~~ 222 (239)
....++|+|+++.| ++.+.++.|.+|++ .+++.
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc
Confidence 46789999999866 55667889999997 45543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-10 Score=96.73 Aligned_cols=178 Identities=11% Similarity=-0.004 Sum_probs=115.2
Q ss_pred CEEEEeeCCCcce----eeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCC----eEEEEeCCCCCcee
Q psy11036 8 LIVALWDIPSEAQ----VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDK----TVNVYDTRSPDPVM 79 (239)
Q Consensus 8 g~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----~v~vw~~~~~~~~~ 79 (239)
..|++|++.+++. +.....+. ..+..+.|+| ++++|+.++.++ .|.+++..+++...
T Consensus 202 ~~v~~~~l~t~~~~~~lv~~~~~~~--------------~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 266 (695)
T 2bkl_A 202 TTIRYHTLGTEPSKDTVVHERTGDP--------------TTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRL 266 (695)
T ss_dssp CEEEEEETTSCGGGCEEEECCCCCT--------------TCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEE
T ss_pred CEEEEEECCCCchhceEEEecCCCC--------------EEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEE
Confidence 3499999987762 22223343 5788999999 677777666555 67777766555444
Q ss_pred eecCCCCEEEEEEecCCcEEEEeC----CCcEEEEEccCCCeE---EEEEecc-CCceEEEEEcCCCCEEEEEecCCeEE
Q psy11036 80 SVNHGSPVESVLCLPSGGIFVTGG----GLDVCIWDMLGGGKL---LHKFTCH-HKTVTSLCLASGGKRLISASLDHHAK 151 (239)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~l~~~~----~~~i~~~d~~~~~~~---~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~ 151 (239)
...+...+....+ +++.+++.+. ++.|.+||+. .+.. ...+..+ ...+..++++ ++..+++...|+..+
T Consensus 267 l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~-~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 267 LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPA-KPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTT-BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCC-CCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 4445555566666 5666444443 3679999986 3332 3333333 4567888888 677888888999888
Q ss_pred EEEcccceEeeeecceeEEEEEccCCCEEEEEEecc-cCcEEEEEEccCCCeEE----EEcCCceEEEEEccCCee
Q psy11036 152 IYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH-HKTVTSLCLASGGKRLI----SASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 152 i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~----s~s~d~~i~iwd~~~~~~ 222 (239)
||.++ . .+.....+..+ ...+..++++|+++.++ +....++|++||+.+++.
T Consensus 344 l~~~~-----------------~--~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 344 VRVAT-----------------L--KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEE-----------------T--TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEe-----------------C--CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 88655 1 12222333333 56677888999987776 333468899999988764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.4e-13 Score=102.71 Aligned_cols=184 Identities=11% Similarity=0.043 Sum_probs=99.0
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
+.||.|+.||..+|+.+..+.. . . +.+..+.. ++..+++++.|+.|+.||..+++.+..+...
T Consensus 16 s~dg~v~a~d~~tG~~~W~~~~-~--------------~-~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 16 TLDGSLHAVSKRTGSIKWTLKE-D--------------P-VLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp ETTSEEEEEETTTCCEEEEEEC-C--------------C-SCCCC------CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred cCCCEEEEEECCCCCEEEEecC-C--------------C-ceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence 3578999999999999888776 3 2 22333344 5667888889999999999988876555321
Q ss_pred --CCEE-EEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cce
Q psy11036 85 --SPVE-SVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 85 --~~v~-~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 159 (239)
..+. ..... .+..+++++ ++.+..||.+ +++.+..+..+. ...++|++..+++++.|+.|+.||.+ ++.
T Consensus 79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~-tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLL-TGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp HHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred CccccccCceEe-cCCEEEEEeCCCEEEEEECC-CCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 0010 00111 234455555 7899999998 777776665443 23456788889999999999999987 332
Q ss_pred EeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC---CeEEEEcCCceEEEEEccCCeeeEEecCCCCeee
Q psy11036 160 VSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG---KRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLS 234 (239)
Q Consensus 160 ~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~ 234 (239)
+..+ ..+. .....+.++. ..++.++.||.|+.||..+|+.+.+....+++..
T Consensus 153 ~W~~---------------------~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~ 207 (369)
T 2hz6_A 153 RWNA---------------------TYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVA 207 (369)
T ss_dssp CCEE---------------------EEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEE
T ss_pred EEeE---------------------eccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEE
Confidence 2222 1100 1122233322 4577788999999999999999988876666543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.7e-09 Score=76.99 Aligned_cols=173 Identities=10% Similarity=0.031 Sum_probs=118.3
Q ss_pred CCeEEEEEecCCCCEEEEeeCCC--eEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDK--TVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg--~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~ 118 (239)
.-...+.|+ ++.++.+.+.+| .|+++|+++++....+............+.+..+.... ++.+.+||.. +.+.
T Consensus 43 ~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~-t~~~ 119 (262)
T 3nol_A 43 AFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR-NLRQ 119 (262)
T ss_dssp CEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT-TCCE
T ss_pred cccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECc-cCcE
Confidence 335788988 457777887776 89999999999988885555554433334455555555 7999999998 8888
Q ss_pred EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEeccc-CcEEEEEE
Q psy11036 119 LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH-KTVTSLCL 196 (239)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~-~~v~~~~~ 196 (239)
+.++..... ...++++++.|+.+..++.|.++|.. .+.+.++. + ...+.. ..+..+.+
T Consensus 120 ~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~---------V--------~~~g~~~~~lNELe~ 179 (262)
T 3nol_A 120 VRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTIT---------V--------TAHGEELPELNELEW 179 (262)
T ss_dssp EEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEE---------C--------EETTEECCCEEEEEE
T ss_pred EEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEE---------e--------ccCCccccccceeEE
Confidence 888875332 23344577777777667888888887 33333220 0 000111 23445677
Q ss_pred ccCCCeEEEEcCCceEEEEEccCCeeeEEecCC-------------CCeeeeEecC
Q psy11036 197 ASGGKRLISASLDHHAKIYEMVNFSPVHTLDYP-------------SPVLSIDVSM 239 (239)
Q Consensus 197 s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-------------~~v~~~~~sp 239 (239)
. +|+..+..-.+..|.+.|.++++.+..+... ...+.+||+|
T Consensus 180 ~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp 234 (262)
T 3nol_A 180 V-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK 234 (262)
T ss_dssp E-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET
T ss_pred E-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC
Confidence 5 7777776667889999999999999988743 3568899876
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.8e-10 Score=85.46 Aligned_cols=183 Identities=8% Similarity=-0.046 Sum_probs=114.6
Q ss_pred CCeEEEEEecCCCCEEEEeeC-----CCeEEEEeCCCCCceeeecC-------CCCEEEEEEecCCcEE-EEe----CCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSY-----DKTVNVYDTRSPDPVMSVNH-------GSPVESVLCLPSGGIF-VTG----GGL 105 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~-----dg~v~vw~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l-~~~----~~~ 105 (239)
..+.++++++ +++++++-.. ++.|.+||+.+++.+..+.. ...+..+++++++..+ ++. .++
T Consensus 67 ~~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~ 145 (343)
T 2qe8_A 67 DTVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA 145 (343)
T ss_dssp SCEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC
T ss_pred eEeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCC
Confidence 5789999999 6766665433 57899999998886665532 2346899999865444 443 247
Q ss_pred cEEEEEccCCCeEEEEEeccC-----------------------------CceEEEEEcCCCCEEEEEecCC-eEEEEEc
Q psy11036 106 DVCIWDMLGGGKLLHKFTCHH-----------------------------KTVTSLCLASGGKRLISASLDH-HAKIYEM 155 (239)
Q Consensus 106 ~i~~~d~~~~~~~~~~~~~~~-----------------------------~~i~~i~~~~~~~~l~~~~~d~-~i~i~d~ 155 (239)
.|.+||+. .++....+..|. ..+..|+|+|+++.|+.+..++ .+..++.
T Consensus 146 ~i~v~d~~-~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 146 ALIRVDLQ-TGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp EEEEEETT-TCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred eEEEEECC-CCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 89999987 555544443221 2357899999998888877665 4443333
Q ss_pred ccceEeeeecceeEEEEEccCCCEEE--EEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecC--CCC
Q psy11036 156 TLKTVSSFTGGLDVCIWDMLGGGKLL--HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDY--PSP 231 (239)
Q Consensus 156 ~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--~~~ 231 (239)
.......+ ...+.. ....++......++++++|.++++...++.|.+||.++++....... ...
T Consensus 225 ~~~~~~~~------------~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~ 292 (343)
T 2qe8_A 225 ADLSNLQL------------TDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSW 292 (343)
T ss_dssp HHHTCTTC------------CHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSC
T ss_pred HHhcCCCC------------ChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceec
Confidence 20000000 000000 01112333456789999999999999999999999866764333332 345
Q ss_pred eeeeEecC
Q psy11036 232 VLSIDVSM 239 (239)
Q Consensus 232 v~~~~~sp 239 (239)
+.+++|.|
T Consensus 293 p~~va~~~ 300 (343)
T 2qe8_A 293 TDSFNFGS 300 (343)
T ss_dssp EEEEEECT
T ss_pred CCeeEECC
Confidence 77777754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-09 Score=89.69 Aligned_cols=182 Identities=13% Similarity=0.068 Sum_probs=116.2
Q ss_pred CCEEEEeeCCCcce--eeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCC-----eEEEEeCCCC--C-
Q psy11036 7 ILIVALWDIPSEAQ--VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDK-----TVNVYDTRSP--D- 76 (239)
Q Consensus 7 dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~v~vw~~~~~--~- 76 (239)
...|++|++.+++. ...+.... +...+..+.|+| ++++|+..+.++ .|.+||+.++ +
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~------------~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 308 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPE------------LPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGP 308 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTT------------CTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred CCEEEEEECCCCchhCEEEeccCC------------CCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence 34688899877652 22222221 003588999999 788777666543 8999999877 4
Q ss_pred ceeeecCCCCEEEEEEecCCcEEEEeC-----CCcEEEEEccCC-CeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeE
Q psy11036 77 PVMSVNHGSPVESVLCLPSGGIFVTGG-----GLDVCIWDMLGG-GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 150 (239)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 150 (239)
......+........ +|++..|+..+ .+.|.+||+... ......+..+...+..+++. ++..+++...|+..
T Consensus 309 ~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 309 VTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKS 386 (741)
T ss_dssp CEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred cEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 333334444444443 48888777665 245889998732 23444445555567778887 56678888889988
Q ss_pred EEEEcccceEeeeecceeEEEEEccCCCEEEEEEec-ccCcEEEEEEccCCCeEE----EEcCCceEEEEEccCCee
Q psy11036 151 KIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC-HHKTVTSLCLASGGKRLI----SASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 151 ~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~----s~s~d~~i~iwd~~~~~~ 222 (239)
+||.++ . .+.....+.. +...+..+.++|+++.|+ +....++|++||+.+++.
T Consensus 387 ~l~~~~-----------------~--~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 387 QVLAFD-----------------L--DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEEE-----------------T--TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEe-----------------C--CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 777554 1 1222333333 356788899999987665 223468999999988763
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.7e-09 Score=75.68 Aligned_cols=173 Identities=12% Similarity=0.029 Sum_probs=118.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~ 120 (239)
.-...+.|+ ++.++.+.+.+|.|+++|+++++.+..+ ...........+.+..+.... ++.+.+||.. +.+.+.
T Consensus 55 ~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~-Tl~~~~ 130 (268)
T 3nok_A 55 AFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGM-PPQRER 130 (268)
T ss_dssp CCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETT-TTEEEE
T ss_pred cccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECC-cCcEEE
Confidence 345788887 4678888889999999999999988877 444444422333444444444 7999999998 888898
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG 199 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~ 199 (239)
++...... ..++ ++++.|+.+..++.|.++|.. .+.+.++. +...+. .-..+..+.|. +
T Consensus 131 ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~---------V~~~g~-------~v~~lNeLe~~-d 190 (268)
T 3nok_A 131 TTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQ---------VKLRGQ-------PVELINELECA-N 190 (268)
T ss_dssp EEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEE---------CEETTE-------ECCCEEEEEEE-T
T ss_pred EEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEE---------eCCCCc-------ccccccccEEe-C
Confidence 88753322 3344 567777777778899998887 33332220 000000 01234567776 7
Q ss_pred CCeEEEEcCCceEEEEEccCCeeeEEecCC--------------CCeeeeEecC
Q psy11036 200 GKRLISASLDHHAKIYEMVNFSPVHTLDYP--------------SPVLSIDVSM 239 (239)
Q Consensus 200 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~sp 239 (239)
|+..+..-.+..|.+.|.++++.+..+... .-.+.+||+|
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp 244 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP 244 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC
Confidence 776766667889999999999999988732 3568888876
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.3e-09 Score=88.11 Aligned_cols=221 Identities=8% Similarity=0.016 Sum_probs=138.1
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccce----------------eec--cCCCCCeEEEEEecCCCCEEEEeeCCC--
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPL----------------MLY--STPQDYVRAGTVSPVSSDIVISGSYDK-- 65 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----------------~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg-- 65 (239)
.+|.|+.+|..+|+.+..+.........+. ..+ .........++++| +..+++.+..++
T Consensus 188 ~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~ 266 (677)
T 1kb0_A 188 VRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSP 266 (677)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEES
T ss_pred CCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCcc
Confidence 378999999999999888765431100000 000 00001223578888 667777766553
Q ss_pred -----------------eEEEEeCCCCCceeeec---C-------CCCEEEEEEecCC---cEEEEeC-CCcEEEEEccC
Q psy11036 66 -----------------TVNVYDTRSPDPVMSVN---H-------GSPVESVLCLPSG---GIFVTGG-GLDVCIWDMLG 114 (239)
Q Consensus 66 -----------------~v~vw~~~~~~~~~~~~---~-------~~~v~~~~~~~~~---~~l~~~~-~~~i~~~d~~~ 114 (239)
.|..+|.++++.+..+. + ......+....+| ..++.+. +|.+.++|.+
T Consensus 267 w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~- 345 (677)
T 1kb0_A 267 WSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRT- 345 (677)
T ss_dssp SCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETT-
T ss_pred ccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECC-
Confidence 59999999999887663 2 1223333444467 5677776 7999999998
Q ss_pred CCeEEEEEeccCC-----------ce------------------------EEEEEcCCCCEEEEEecCCeEEEEEcc---
Q psy11036 115 GGKLLHKFTCHHK-----------TV------------------------TSLCLASGGKRLISASLDHHAKIYEMT--- 156 (239)
Q Consensus 115 ~~~~~~~~~~~~~-----------~i------------------------~~i~~~~~~~~l~~~~~d~~i~i~d~~--- 156 (239)
+++.+........ ++ ..++++|+...+++...+-...++...
T Consensus 346 tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~ 425 (677)
T 1kb0_A 346 NGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWE 425 (677)
T ss_dssp TCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCC
T ss_pred CCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccc
Confidence 7777766542210 11 146788888888777665444333321
Q ss_pred -c-----------ceE-----eee----ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEE
Q psy11036 157 -L-----------KTV-----SSF----TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIY 215 (239)
Q Consensus 157 -~-----------~~~-----~~~----~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iw 215 (239)
+ ... ... ...+.+..||+.+ ++.+..... ..++....+..++.+++.++.||.+++|
T Consensus 426 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 426 FNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp TTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred cccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 0 000 000 0125688889877 555555442 3344455567778889999999999999
Q ss_pred EccCCeeeEEecCCC
Q psy11036 216 EMVNFSPVHTLDYPS 230 (239)
Q Consensus 216 d~~~~~~~~~~~~~~ 230 (239)
|.++++.+.++..+.
T Consensus 504 D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 504 HAATGEKLWEAPTGT 518 (677)
T ss_dssp ETTTCCEEEEEECSS
T ss_pred ECCCCceeeeeeCCC
Confidence 999999999998443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.6e-09 Score=82.26 Aligned_cols=166 Identities=10% Similarity=0.116 Sum_probs=103.4
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee----e-cCCCC--EEEEEEecC-CcEEEEeC-CCcEEEEEcc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS----V-NHGSP--VESVLCLPS-GGIFVTGG-GLDVCIWDML 113 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~----~-~~~~~--v~~~~~~~~-~~~l~~~~-~~~i~~~d~~ 113 (239)
..+.+++++|+++. |+.+..++.|+.||..++..... . ..... ...++|+|+ +.++++.. .+.|..|+..
T Consensus 219 ~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~ 297 (409)
T 3hrp_A 219 GKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD 297 (409)
T ss_dssp SCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred CCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence 55778999994444 44466788999999987764332 1 11111 139999996 44444444 5889999875
Q ss_pred CCCeEEEEEeccC---------------CceEEEEEcCCCCEEEEEe-cCCeEEEEEcccceEeeeecceeEEEEEccCC
Q psy11036 114 GGGKLLHKFTCHH---------------KTVTSLCLASGGKRLISAS-LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGG 177 (239)
Q Consensus 114 ~~~~~~~~~~~~~---------------~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~ 177 (239)
+. ...+.++. .....++++|+|+++++-. .++.|+.|++....+..+.|.....-+ . .
T Consensus 298 --g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~--~-~ 371 (409)
T 3hrp_A 298 --GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQ--I-D 371 (409)
T ss_dssp --CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSC--C-C
T ss_pred --CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCc--C-C
Confidence 33 33333322 3478999999999777777 789999999662223333211000000 0 0
Q ss_pred CEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 178 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 178 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
+.. ....-.....++++++|.++++-..+++|+.++++
T Consensus 372 g~~---~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 372 GTP---LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp BST---TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CCh---hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 000 00012457899999999888888889999988763
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.4e-10 Score=92.76 Aligned_cols=191 Identities=12% Similarity=0.138 Sum_probs=118.1
Q ss_pred CCeEEEEEecCCCCEEEE-----eeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CC-----------
Q psy11036 43 DYVRAGTVSPVSSDIVIS-----GSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GL----------- 105 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s-----~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~----------- 105 (239)
..+..++|+| ++++|+- |+....|+++|+.+++.+...........++|+ |++.|+.+. +.
T Consensus 129 ~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~ 206 (693)
T 3iuj_A 129 TALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTD 206 (693)
T ss_dssp CEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CC
T ss_pred EEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCC
Confidence 4688899999 7887773 333468999999999865432111113567899 999887776 42
Q ss_pred --cEEEEEccCCC---eEEEEEec-cCCceEEEEEcCCCCEEEEEec----CCeEEEEEcc-cc-eEeee----------
Q psy11036 106 --DVCIWDMLGGG---KLLHKFTC-HHKTVTSLCLASGGKRLISASL----DHHAKIYEMT-LK-TVSSF---------- 163 (239)
Q Consensus 106 --~i~~~d~~~~~---~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~----d~~i~i~d~~-~~-~~~~~---------- 163 (239)
.|.+|++.... ..+..... |......+.|+|||++|+.... ++.|+++|+. .. ....+
T Consensus 207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~ 286 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL 286 (693)
T ss_dssp CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE
T ss_pred CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE
Confidence 38899986322 12332233 4455788999999998765443 3589999976 21 22222
Q ss_pred -----------e----cceeEEEEEccCCCE-EEEEEecccCcEEEEEEccCCCeEEEEcC-Cc--eEEEEEccCCeeeE
Q psy11036 164 -----------T----GGLDVCIWDMLGGGK-LLHKFTCHHKTVTSLCLASGGKRLISASL-DH--HAKIYEMVNFSPVH 224 (239)
Q Consensus 164 -----------~----~~~~i~~~d~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-d~--~i~iwd~~~~~~~~ 224 (239)
+ ....|..+|+.+... ....+..|...+. .|+++++.|+.... ++ .|++|++..+ ...
T Consensus 287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~ 363 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVR 363 (693)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeE
Confidence 1 123477777765322 1234555665555 88999988876654 44 6899998744 445
Q ss_pred EecC--CCCeeeeEec
Q psy11036 225 TLDY--PSPVLSIDVS 238 (239)
Q Consensus 225 ~~~~--~~~v~~~~~s 238 (239)
.+.. .+.+..++++
T Consensus 364 ~l~~p~~~~~~~~~~~ 379 (693)
T 3iuj_A 364 EVALPGLGSVSGFNGK 379 (693)
T ss_dssp EECCSSSSEEEECCCC
T ss_pred EeecCCCceEEeeecC
Confidence 5542 3345555443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-08 Score=85.89 Aligned_cols=220 Identities=9% Similarity=-0.004 Sum_probs=137.3
Q ss_pred CCCEEEEeeCCCcceeeeeeCCc--ee--ecccee--ecc-----------CCCCCeEEEEEecCCCCEEEEeeCCCe--
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHT--TI--YKVPLM--LYS-----------TPQDYVRAGTVSPVSSDIVISGSYDKT-- 66 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~--~~--~~~~~~--~~~-----------~~~~~v~~~~~~~~~~~~l~s~~~dg~-- 66 (239)
.+|.|+.||.++|+.+..+.... .. ...+.. ... ........+++.| ...+++.++.++.
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w 259 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLW 259 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCcc
Confidence 47899999999999988775311 00 000000 000 0001112578888 6778888877763
Q ss_pred -----------------EEEEeCCCCCceeeec---CC-------CCEEEEEEecCCc---EEEEeC-CCcEEEEEccCC
Q psy11036 67 -----------------VNVYDTRSPDPVMSVN---HG-------SPVESVLCLPSGG---IFVTGG-GLDVCIWDMLGG 115 (239)
Q Consensus 67 -----------------v~vw~~~~~~~~~~~~---~~-------~~v~~~~~~~~~~---~l~~~~-~~~i~~~d~~~~ 115 (239)
|..+|.++++.+..+. +. .+........+|+ .++.+. +|.++++|.+ +
T Consensus 260 ~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~-t 338 (689)
T 1yiq_A 260 DPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRA-T 338 (689)
T ss_dssp CHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT-T
T ss_pred ccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECC-C
Confidence 9999999999887663 21 2222223333565 566666 7999999998 7
Q ss_pred CeEEEEEeccCC---------------------------------------ceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 116 GKLLHKFTCHHK---------------------------------------TVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 116 ~~~~~~~~~~~~---------------------------------------~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
++.+........ .-..++++|+...+++...+....++...
T Consensus 339 G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 418 (689)
T 1yiq_A 339 GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIP 418 (689)
T ss_dssp CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCS
T ss_pred CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecc
Confidence 777643321110 01126788888888888776655554433
Q ss_pred cc--------eEe------eee------------cceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc
Q psy11036 157 LK--------TVS------SFT------------GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH 210 (239)
Q Consensus 157 ~~--------~~~------~~~------------~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~ 210 (239)
.. ... .+. -.+.+..||+.+ ++.+.....+. ++....+...+.+++.++.||
T Consensus 419 ~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg 496 (689)
T 1yiq_A 419 EAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADG 496 (689)
T ss_dssp SCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESS-SCCCCEEEETTTEEEEECTTS
T ss_pred ccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCC-CccCccceECCCEEEEECCCC
Confidence 11 000 000 026689999987 55555555433 233335666788999999999
Q ss_pred eEEEEEccCCeeeEEecCC
Q psy11036 211 HAKIYEMVNFSPVHTLDYP 229 (239)
Q Consensus 211 ~i~iwd~~~~~~~~~~~~~ 229 (239)
.++.||.++|+.+.+++.+
T Consensus 497 ~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 497 RVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp EEEEEETTTCCEEEEEECS
T ss_pred cEEEEECCCCccceeeeCC
Confidence 9999999999999988754
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.9e-08 Score=71.03 Aligned_cols=174 Identities=12% Similarity=0.064 Sum_probs=116.8
Q ss_pred CCeEEEEEecCCCCEEEEeeCCC--eEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDK--TVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg--~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~ 118 (239)
.-...+.|++ +.++.+.+.+| .|+.+|+.+++....+............+.+..+.... ++.+.+||.. +.+.
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~-tl~~ 97 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA-TLTP 97 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT-TTEE
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC-cCcE
Confidence 5677899985 56777777654 89999999999988875444443333333455555555 7999999998 8888
Q ss_pred EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEc
Q psy11036 119 LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 197 (239)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s 197 (239)
+.++...... ..++ ++++.|+.+..++.|.++|.. .+.+.++. +...+.+ -..+..+.+.
T Consensus 98 ~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~---------V~~~g~~-------~~~lNeLe~~ 158 (243)
T 3mbr_X 98 RARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIK---------VTAGGRP-------LDNLNELEWV 158 (243)
T ss_dssp EEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEE---------CEETTEE-------CCCEEEEEEE
T ss_pred EEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEE---------EccCCcc-------cccceeeEEe
Confidence 9888854333 3444 567767666678889988887 33322220 0000110 1234556654
Q ss_pred cCCCeEEEEcCCceEEEEEccCCeeeEEecCC--------------CCeeeeEecC
Q psy11036 198 SGGKRLISASLDHHAKIYEMVNFSPVHTLDYP--------------SPVLSIDVSM 239 (239)
Q Consensus 198 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~sp 239 (239)
+|+..+..-.+..|.+.|.++++.+..+... .-.+.+|++|
T Consensus 159 -~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~ 213 (243)
T 3mbr_X 159 -NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA 213 (243)
T ss_dssp -TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET
T ss_pred -CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC
Confidence 6776766667889999999999999988722 2567888876
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-09 Score=83.69 Aligned_cols=183 Identities=10% Similarity=0.017 Sum_probs=122.4
Q ss_pred CCCEEEEeeC-C----CeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-----------CCcEEEEEccCCCe
Q psy11036 54 SSDIVISGSY-D----KTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-----------GLDVCIWDMLGGGK 117 (239)
Q Consensus 54 ~~~~l~s~~~-d----g~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~~~i~~~d~~~~~~ 117 (239)
+++.+++... + +.|.++|..+++.+.++...... .++++|+++.++++. ++.|.++|.. +.+
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~-t~~ 160 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV-TFL 160 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-TCC
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC-CCc
Confidence 4555544433 3 69999999999999888543334 899999999888775 4679999998 777
Q ss_pred EEEEEecc-------CCceEEEEEcCCCCEEEEEec--CCeEEEEEcc-cceEeeee-------------------ccee
Q psy11036 118 LLHKFTCH-------HKTVTSLCLASGGKRLISASL--DHHAKIYEMT-LKTVSSFT-------------------GGLD 168 (239)
Q Consensus 118 ~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~--d~~i~i~d~~-~~~~~~~~-------------------~~~~ 168 (239)
.+..+.-. ......+.++|||++++++.. ++.|.+.|+. .+.+.++. +++.
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~ 240 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGS 240 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSS
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCC
Confidence 77776532 123467899999999998874 5789999998 44444332 2222
Q ss_pred EEEEEccCCCEEE------------------------------------EEEeccc-----------------------C
Q psy11036 169 VCIWDMLGGGKLL------------------------------------HKFTCHH-----------------------K 189 (239)
Q Consensus 169 i~~~d~~~~~~~~------------------------------------~~~~~h~-----------------------~ 189 (239)
+.+.+... .+.. ..+.... .
T Consensus 241 ~~~V~~~~-~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~ 319 (426)
T 3c75_H 241 LARVDFAD-GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPG 319 (426)
T ss_dssp EEEEECCT-TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEEC
T ss_pred EEEEECCC-CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccC
Confidence 33333311 1100 0000000 0
Q ss_pred cEEEEEEccCCCeEEEEc----------CCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 190 TVTSLCLASGGKRLISAS----------LDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 190 ~v~~~~~s~~~~~l~s~s----------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
....++++|+++.++... .++.|.++|..+++.+.++........++|+|
T Consensus 320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~sp 379 (426)
T 3c75_H 320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQ 379 (426)
T ss_dssp SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECC
T ss_pred CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEcc
Confidence 011267888888766553 24689999999999999998777788888876
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-08 Score=76.24 Aligned_cols=164 Identities=12% Similarity=0.050 Sum_probs=102.6
Q ss_pred EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC------CCeEEEEeCCCCCceeeec
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY------DKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------dg~v~vw~~~~~~~~~~~~ 82 (239)
.|++||.++++......... ......+.+++++| +++++++... .+.|..++ +++......
T Consensus 110 gl~~~d~~~g~~~~~~~~~~----------~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~ 176 (326)
T 2ghs_A 110 GLFLRDTATGVLTLHAELES----------DLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA 176 (326)
T ss_dssp EEEEEETTTCCEEEEECSST----------TCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE
T ss_pred CEEEEECCCCcEEEEeeCCC----------CCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC
Confidence 47778877766432221100 00013588999999 6777665432 24565566 444332223
Q ss_pred CCCCEEEEEEecCCcEEEEeC--CCcEEEEEcc-CCC-e-----EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG--GLDVCIWDML-GGG-K-----LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIY 153 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~-~~~-~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 153 (239)
.......++|+|+++.++.+. ++.|.+|++. ..+ . .+..+.........+++.++|+++++...++.|.+|
T Consensus 177 ~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~ 256 (326)
T 2ghs_A 177 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRY 256 (326)
T ss_dssp EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence 334567899999998776554 5889999985 123 2 222232334567889999999877777667888888
Q ss_pred EcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEc-cCCCeEEEE
Q psy11036 154 EMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA-SGGKRLISA 206 (239)
Q Consensus 154 d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~ 206 (239)
|.. ++.+..+..+...+.+++|+ |+++.|+.+
T Consensus 257 d~~---------------------g~~~~~i~~~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 257 DTD---------------------GNHIARYEVPGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp CTT---------------------CCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred CCC---------------------CCEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence 765 33444445556679999998 887766444
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.5e-09 Score=76.11 Aligned_cols=175 Identities=11% Similarity=0.010 Sum_probs=120.1
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC-C
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG-S 85 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-~ 85 (239)
++.|++.|+.+++.+..+..... .....+++. ++.+.++.-.++.+.++|..+.+.+.++... .
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~~-------------~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~ 107 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDDS-------------YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK 107 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCTT-------------CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS
T ss_pred CCEEEEEECCCCCEEEEEecCCC-------------cceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC
Confidence 57999999999999888764320 223355665 3456666667899999999999988888543 2
Q ss_pred CEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccC-----CceEEEEEcCCCCEEEEEecCCeEEEEEcccce
Q psy11036 86 PVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHH-----KTVTSLCLASGGKRLISASLDHHAKIYEMTLKT 159 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~ 159 (239)
. ...++++++.++++. ++.|.++|.. +.+....+.-.. ..+..+.|. +|...+....++.|.+.|..
T Consensus 108 ~--g~glt~Dg~~l~vs~gs~~l~viD~~-t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~--- 180 (266)
T 2iwa_A 108 D--GWGLATDGKILYGSDGTSILYEIDPH-TFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAK--- 180 (266)
T ss_dssp S--CCEEEECSSSEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETT---
T ss_pred C--eEEEEECCCEEEEECCCCeEEEEECC-CCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECC---
Confidence 2 244566777776666 6899999998 667777665322 135678887 67655555567889988887
Q ss_pred EeeeecceeEEEEEccCCCEEEEEEecc-------------cCcEEEEEEccCCC-eEEEEcCCceEEEEEccCC
Q psy11036 160 VSSFTGGLDVCIWDMLGGGKLLHKFTCH-------------HKTVTSLCLASGGK-RLISASLDHHAKIYEMVNF 220 (239)
Q Consensus 160 ~~~~~~~~~i~~~d~~~~~~~~~~~~~h-------------~~~v~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~ 220 (239)
+++.+..+... ......++|+|+++ +++++...++|...++...
T Consensus 181 -----------------tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 181 -----------------DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp -----------------TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred -----------------CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 23333333211 13468999999876 5566767889999888654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-08 Score=74.92 Aligned_cols=165 Identities=8% Similarity=-0.046 Sum_probs=101.0
Q ss_pred CCeEEEEEecCCCC-EEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSD-IVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~ 119 (239)
.......|+| +++ ++++...++.|..|+. +++. ..+ .....+..++++++|+++++.. ++.|.+|+.. ++..
T Consensus 45 ~~~egp~~~~-~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~~~ 119 (305)
T 3dr2_A 45 TWSEGPAWWE-AQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQAH 119 (305)
T ss_dssp SSEEEEEEEG-GGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEE
T ss_pred cCccCCeEeC-CCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC--CCEE
Confidence 6678999999 565 7788888899999998 4543 333 4567789999999999777665 4789999875 3322
Q ss_pred EEEecc----CCceEEEEEcCCCCEEEE----EecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcE
Q psy11036 120 HKFTCH----HKTVTSLCLASGGKRLIS----ASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTV 191 (239)
Q Consensus 120 ~~~~~~----~~~i~~i~~~~~~~~l~~----~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v 191 (239)
...... ...+..++++++|+.+++ |..+. ..+.....-.+...|..+|..+ ++.... . .....
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~------~~~~~~~~~~~~~~v~~~d~~~-g~~~~~-~-~~~~p 190 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKP------SQGCPADPELAHHSVYRLPPDG-SPLQRM-A-DLDHP 190 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCG------GGSCCCCCSSSCEEEEEECSSS-CCCEEE-E-EESSE
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccc------ccccccccccCCCeEEEEcCCC-CcEEEE-e-cCCCC
Confidence 211111 134677999999987776 32210 0000000000111233333322 111111 1 23456
Q ss_pred EEEEEccCCCeEEEEcCC------ceEEEEEccCCe
Q psy11036 192 TSLCLASGGKRLISASLD------HHAKIYEMVNFS 221 (239)
Q Consensus 192 ~~~~~s~~~~~l~s~s~d------~~i~iwd~~~~~ 221 (239)
..++|+||++.|+.+... +.|++|++..+.
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 789999999977766554 789999987654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-08 Score=74.44 Aligned_cols=175 Identities=11% Similarity=-0.056 Sum_probs=111.3
Q ss_pred CCCCC--EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeE--EEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee
Q psy11036 4 DLPIL--IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVR--AGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM 79 (239)
Q Consensus 4 ~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 79 (239)
+|.+| .|+++|+++++.++.+.... ... .++.. ++++.+..-.++.+.++|..+.+.+.
T Consensus 59 tG~~g~S~v~~vD~~Tgkv~~~~~l~~---------------~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 59 TGLNGRSSIRKVDIESGKTLQQIELGK---------------RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEETTEEEEEEECTTTCCEEEEEECCT---------------TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred CCCCCCceEEEEECCCCcEEEEEecCC---------------ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEE
Confidence 34444 89999999999988887653 233 34443 44555555678999999999999999
Q ss_pred eecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccC-----CceEEEEEcCCCCEEEEEecCCeEEEE
Q psy11036 80 SVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHH-----KTVTSLCLASGGKRLISASLDHHAKIY 153 (239)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~i~ 153 (239)
++.....- ..+.+++..++.+. ++.|.++|.. +.+.+.++.... ..++.+.|. +|+..+..-.++.|.+.
T Consensus 122 ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~-T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vI 197 (262)
T 3nol_A 122 SFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPE-SLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRI 197 (262)
T ss_dssp EEECSSCC--CCEEECSSCEEECCSSSEEEEECTT-TCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEECCCCc--eEEecCCCEEEEECCCCeEEEEcCC-CCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEE
Confidence 88544322 33345677666665 6889999998 777777765422 234557776 67666666578889999
Q ss_pred Ecc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC
Q psy11036 154 EMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL 208 (239)
Q Consensus 154 d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 208 (239)
|.+ ++.+..+ |+..-.........-..-...|+++|+++.|+..+.
T Consensus 198 Dp~tG~V~~~I---------d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 198 DPETGKVTGII---------DLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CTTTCBEEEEE---------ECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ECCCCcEEEEE---------ECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 888 4443333 221100000000011234688999998776666554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.3e-07 Score=67.13 Aligned_cols=159 Identities=9% Similarity=-0.016 Sum_probs=101.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~ 119 (239)
..+..+++++.++.++++-..++.|..++.........+. .......++++|++..++.+. .+.|.++++. .....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-g~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC-CCCEE
Confidence 4578999999545566666677899999997665443333 235788999999766666554 5889999986 32222
Q ss_pred EEEeccCCceEEEEEcCCCCEEEEEec---CCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEE
Q psy11036 120 HKFTCHHKTVTSLCLASGGKRLISASL---DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL 196 (239)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~ 196 (239)
............++++|++..|..+.. .+.|..+++++... +.+ ..........+++
T Consensus 115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~------------------~~~--~~~~~~~P~gia~ 174 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------------------RIL--AQDNLGLPNGLTF 174 (267)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC------------------EEE--ECTTCSCEEEEEE
T ss_pred EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc------------------EEE--EECCCCCCcEEEE
Confidence 222222245689999997665555543 35777777662111 111 1122245678999
Q ss_pred ccCCCeE-EEEcCCceEEEEEccCCee
Q psy11036 197 ASGGKRL-ISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 197 s~~~~~l-~s~s~d~~i~iwd~~~~~~ 222 (239)
+|++..| ++-...+.|.++|+.....
T Consensus 175 d~~~~~lyv~d~~~~~I~~~~~~g~~~ 201 (267)
T 1npe_A 175 DAFSSQLCWVDAGTHRAECLNPAQPGR 201 (267)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEecCCCce
Confidence 9976655 5556678999999875443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.10 E-value=9.9e-09 Score=78.92 Aligned_cols=180 Identities=8% Similarity=0.013 Sum_probs=115.2
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee---CCCeEEEEeCCCCCceeeec-
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS---YDKTVNVYDTRSPDPVMSVN- 82 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~v~vw~~~~~~~~~~~~- 82 (239)
++.|.+||+.+++.+..+..+.. ...+...+..+++++.++..+++.. .++.|.+||+.+++....+.
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~--------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPP--------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTT--------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred CCeEEEEECCCCeEEEEEECChh--------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence 46788899888887766654320 0011145689999984455556655 67899999998776555431
Q ss_pred C-----------------------------CCCEEEEEEecCCcEEEEeC-C-CcEEEEEccC--CCe--------EEEE
Q psy11036 83 H-----------------------------GSPVESVLCLPSGGIFVTGG-G-LDVCIWDMLG--GGK--------LLHK 121 (239)
Q Consensus 83 ~-----------------------------~~~v~~~~~~~~~~~l~~~~-~-~~i~~~d~~~--~~~--------~~~~ 121 (239)
| ...+..++++|+++.|+++. . ..+..++... ... .+.
T Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~- 242 (343)
T 2qe8_A 164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE- 242 (343)
T ss_dssp CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-
T ss_pred CCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-
Confidence 1 12368899999998888776 3 4555554320 100 011
Q ss_pred EeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEe-cccCcEEEEEEccCC
Q psy11036 122 FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFT-CHHKTVTSLCLASGG 200 (239)
Q Consensus 122 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~h~~~v~~~~~s~~~ 200 (239)
..++......++++++|+.+++...++.|.+||.. .++...... .+...+.+++|.+++
T Consensus 243 ~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~--------------------~G~~~~~~~~~~~~~p~~va~~~~g 302 (343)
T 2qe8_A 243 RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSA--------------------DRAYKLLVTDEKLSWTDSFNFGSDG 302 (343)
T ss_dssp EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETT--------------------TTEEEEEEECGGGSCEEEEEECTTS
T ss_pred ecccCCCCceEEECCCCCEEEEccCCCeEEEEECC--------------------CCCEEEEEECCceecCCeeEECCCC
Confidence 11334456679999999999998889999999983 122211111 124568899999999
Q ss_pred CeEEEEcCCceEEEE
Q psy11036 201 KRLISASLDHHAKIY 215 (239)
Q Consensus 201 ~~l~s~s~d~~i~iw 215 (239)
+++++.+..+.+.+|
T Consensus 303 ~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 303 YLYFDCNQLHHSAPL 317 (343)
T ss_dssp CEEEEECCGGGSGGG
T ss_pred cEEEEeCcccccccc
Confidence 988888766555444
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-08 Score=80.20 Aligned_cols=200 Identities=14% Similarity=0.058 Sum_probs=131.7
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEE-e-cCCCCEEEEee------------------
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTV-S-PVSSDIVISGS------------------ 62 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~l~s~~------------------ 62 (239)
.+..++.|.+.|+++.+..+.+..... .....+++ . | ++.++++++
T Consensus 107 nd~~~~rVavIdl~t~~~~~ii~ip~g-------------~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 107 NDKANTRVARVRCDVMKCDAILEIPNA-------------KGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECSSC-------------CSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred EcCCCCEEEEEECCCceEeeEEeCCCC-------------CCCcceeeeecC-CCcEEEEecccccccCCCCcccccccc
Confidence 445678899999999998885543210 45778888 4 7 677776663
Q ss_pred CCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CC------------------------------------
Q psy11036 63 YDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GL------------------------------------ 105 (239)
Q Consensus 63 ~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~------------------------------------ 105 (239)
.++.+.+.|..+.+...++...+....++++|+|+++++++ +.
T Consensus 173 ~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 173 YVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred cCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 34689999999988888875444567788999999988887 21
Q ss_pred --cEEEEEccCC-CeE-EEEEeccCCceEEEEEcCCCCEEEEEe-cCCeEEEEEcc-cceEeeeecceeEEEEEccCCCE
Q psy11036 106 --DVCIWDMLGG-GKL-LHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGK 179 (239)
Q Consensus 106 --~i~~~d~~~~-~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~ 179 (239)
.|.+.|.+.. +.. +..+... ....++.++|||+++++++ .+.+|.++|+. .+.. +.+. +.....
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~--~~~~-------l~~~~~ 322 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV--FYEN-------ADPRSA 322 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH--HHSC-------CCGGGG
T ss_pred ECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc--cccc-------cCcccc
Confidence 3666666520 223 4445432 3456799999999776655 57899999988 1100 0000 000011
Q ss_pred EEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC----------CeeeEEec
Q psy11036 180 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN----------FSPVHTLD 227 (239)
Q Consensus 180 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~----------~~~~~~~~ 227 (239)
....... ......++|+|+|...++.-.|++|.+||+.+ .+.+.++.
T Consensus 323 v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid 379 (595)
T 1fwx_A 323 VVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD 379 (595)
T ss_dssp EEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE
T ss_pred eEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee
Confidence 2222222 34577899999995455667899999999977 56677776
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.9e-08 Score=72.38 Aligned_cols=174 Identities=9% Similarity=0.007 Sum_probs=111.6
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCe--EEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYV--RAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS 80 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 80 (239)
.+|.+|.|+++|+++++.++.+ .. ... ..+++. ++++.+..-.++.+.+||..+.+.+.+
T Consensus 70 stG~~g~v~~iD~~Tgkv~~~~-l~---------------~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 70 STGHQGTLRQLSLESAQPVWME-RL---------------GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EETTTTEEEECCSSCSSCSEEE-EC---------------TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred EcCCCCEEEEEECCCCcEEeEE-CC---------------CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 4577888999999999988877 33 223 335554 456666667889999999999999998
Q ss_pred ecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccC-----CceEEEEEcCCCCEEEEEecCCeEEEEE
Q psy11036 81 VNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHH-----KTVTSLCLASGGKRLISASLDHHAKIYE 154 (239)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~i~d 154 (239)
+.....-..++ ++++.|+.+. ++.|.++|.. +.+.+.++.... ..++.+.|. +|+.++..-.++.|.+.|
T Consensus 132 i~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~-T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 132 TRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPD-GFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEID 207 (268)
T ss_dssp EECSSCCCCEE--EETTEEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred EeCCCceeEEe--cCCCEEEEECCCCEEEEEcCC-CCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence 85443333444 5577777666 7899999988 777777765422 134667776 776665555688888888
Q ss_pred cc-cceEeeeecceeEEEEEccCCCEEEE-EEecccCcEEEEEEccCCCeEEEEc
Q psy11036 155 MT-LKTVSSFTGGLDVCIWDMLGGGKLLH-KFTCHHKTVTSLCLASGGKRLISAS 207 (239)
Q Consensus 155 ~~-~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s 207 (239)
.+ ++.+..+ |+..-..... ....-..-...|+++|+++.|+..+
T Consensus 208 p~TG~V~~~I---------dl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 208 PATGTVVGVI---------DASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTTCBEEEEE---------ECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCCcEEEEE---------ECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 87 4443333 2110000000 0001123568899999765554443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-11 Score=96.32 Aligned_cols=147 Identities=11% Similarity=0.101 Sum_probs=81.6
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCC-ceE-
Q psy11036 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHK-TVT- 130 (239)
Q Consensus 54 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~-~i~- 130 (239)
.+..+++++.|+.|+.||..+++.+..+.. ..+.+..+..++..+++++ ++.|..||.. +++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~-tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK-NNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECC-CCceeeeeeccCcccccc
Confidence 467888999999999999999999887754 5555555556777777765 8999999997 5555444432211 110
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc
Q psy11036 131 SLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH 210 (239)
Q Consensus 131 ~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~ 210 (239)
...+. ++..+++++.|+.++.||.+ +++.+..+..+. ...++|++..+++++.|+
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~--------------------tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg 140 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLL--------------------TGEKQQTLSSAF----ADSLSPSTSLLYLGRTEY 140 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC----------------------------------------------EEEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECC--------------------CCcEEEEecCCC----cccccccCCEEEEEecCC
Confidence 00111 34567788889999999987 233333323222 134567888899999999
Q ss_pred eEEEEEccCCeeeEEec
Q psy11036 211 HAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 211 ~i~iwd~~~~~~~~~~~ 227 (239)
.|+.||.++|+.+.++.
T Consensus 141 ~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 141 TITMYDTKTRELRWNAT 157 (369)
T ss_dssp EEECCCSSSSSCCCEEE
T ss_pred EEEEEECCCCCEEEeEe
Confidence 99999999998776553
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.06 E-value=6.7e-09 Score=84.00 Aligned_cols=187 Identities=12% Similarity=0.101 Sum_probs=122.9
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCC---------------------
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDK--------------------- 65 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--------------------- 65 (239)
++.+.+.|.++.+...++.... ....++++| ++.++++.+.+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg---------------~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~ 237 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSG---------------NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFN 237 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESS---------------CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEE
T ss_pred CceEEEEECCCCeEEEEEEeCC---------------CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEee
Confidence 4789999999998888776542 234566788 567666666442
Q ss_pred -----------------eEEEEeCCC--CCc-eeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCe------
Q psy11036 66 -----------------TVNVYDTRS--PDP-VMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGK------ 117 (239)
Q Consensus 66 -----------------~v~vw~~~~--~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~------ 117 (239)
.|.+.|.++ ++. +..+.......++.++|||+++++++ +..|.++|+. ..+
T Consensus 238 ~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~-~~~~~~~~~ 316 (595)
T 1fwx_A 238 IAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT-RFDAVFYEN 316 (595)
T ss_dssp HHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG-GHHHHHHSC
T ss_pred ccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECc-ccccccccc
Confidence 477778777 444 45555555677899999999999988 6899999997 331
Q ss_pred ------EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcE
Q psy11036 118 ------LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTV 191 (239)
Q Consensus 118 ------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v 191 (239)
....... ......++|+|+|...++.-.|++|.+||+... +..+.|. ...+.+..+..|.++-
T Consensus 317 l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a-~~~~~g~---------~~~~vi~kidV~yqpG 385 (595)
T 1fwx_A 317 ADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA-IRAYAGE---------KVDPIKDKLDVHYQPG 385 (595)
T ss_dssp CCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH-HHHHHTC---------SCCCEEEEEECSSCEE
T ss_pred cCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHh-hhhhccc---------ccceeEEEeecccccc
Confidence 3344433 345678999999955556777999999998710 0001010 0134445555554432
Q ss_pred -----EEEEEccCCCeEEEEcC---Cce----------EEEEEccCCe
Q psy11036 192 -----TSLCLASGGKRLISASL---DHH----------AKIYEMVNFS 221 (239)
Q Consensus 192 -----~~~~~s~~~~~l~s~s~---d~~----------i~iwd~~~~~ 221 (239)
..+.++|||++|+++.. |.. -.++|+..++
T Consensus 386 h~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 386 HLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 12356899999998753 443 2889996544
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-08 Score=78.97 Aligned_cols=107 Identities=11% Similarity=0.050 Sum_probs=80.7
Q ss_pred EEEEecCCCCEEEEeeC-----CCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-----------CCcEEEE
Q psy11036 47 AGTVSPVSSDIVISGSY-----DKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-----------GLDVCIW 110 (239)
Q Consensus 47 ~~~~~~~~~~~l~s~~~-----dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~~~i~~~ 110 (239)
.....| +++.+++... ++.|.+.|..+++.+..+....... ++++|+|+.++++. ++.|.+|
T Consensus 37 ~~~~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 37 LEAPAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeccCC-CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 344567 5666655544 6799999999999988885333334 99999999887764 3679999
Q ss_pred EccCCCeEEEEEeccC-------CceEEEEEcCCCCEEEEEec--CCeEEEEEcc
Q psy11036 111 DMLGGGKLLHKFTCHH-------KTVTSLCLASGGKRLISASL--DHHAKIYEMT 156 (239)
Q Consensus 111 d~~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~~~~~--d~~i~i~d~~ 156 (239)
|.. +.+.+.++.... .....++++|||++++++.. ++.|.++|+.
T Consensus 115 D~~-t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~ 168 (386)
T 3sjl_D 115 DPV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE 168 (386)
T ss_dssp CTT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred ECC-CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC
Confidence 998 777777775321 23567999999999888764 6899999998
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=9.3e-09 Score=79.52 Aligned_cols=98 Identities=10% Similarity=-0.118 Sum_probs=74.5
Q ss_pred EEEEeeCCC----eEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-----------CCcEEEEEccCCCeEEEE
Q psy11036 57 IVISGSYDK----TVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-----------GLDVCIWDMLGGGKLLHK 121 (239)
Q Consensus 57 ~l~s~~~dg----~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~~~i~~~d~~~~~~~~~~ 121 (239)
.+++...+. +|.++|..+++.+.++.....- .+.++|+++.++++. ++.|.+||+. +.+.+.+
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~-T~~vv~~ 111 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV-TFLPIAD 111 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT-TCCEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC-CCCEEEE
Confidence 444444444 8889999999999888433323 799999999888875 4789999999 8888888
Q ss_pred EeccC-------CceEEEEEcCCCCEEEEEec--CCeEEE--EEcc
Q psy11036 122 FTCHH-------KTVTSLCLASGGKRLISASL--DHHAKI--YEMT 156 (239)
Q Consensus 122 ~~~~~-------~~i~~i~~~~~~~~l~~~~~--d~~i~i--~d~~ 156 (239)
+.... .....++++|||++++++.. +..+.+ +|+.
T Consensus 112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~ 157 (368)
T 1mda_H 112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS 157 (368)
T ss_dssp EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchh
Confidence 76431 23467999999999998875 467888 8875
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-07 Score=67.84 Aligned_cols=173 Identities=9% Similarity=-0.003 Sum_probs=108.9
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCE
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPV 87 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v 87 (239)
..|+.+|+++++.++.+..... ---..+++. ++++....-.++.+.++|..+.+.+.++.....-
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~-------------~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G 107 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPP-------------YFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG 107 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTT-------------CCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC
T ss_pred ceEEEEECCCCCEEEEEeCCCC-------------cceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc
Confidence 4899999999999988876530 111234443 4556666667899999999999999988544433
Q ss_pred EEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccC-----CceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceE
Q psy11036 88 ESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHH-----KTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTV 160 (239)
Q Consensus 88 ~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~ 160 (239)
..++ +++..|+++. ++.|.++|.. +.+.+.++.-.. ..++.+.+. +|+.++..-.+..|.+.|.+ ++.+
T Consensus 108 wglt--~dg~~L~vSdgs~~l~~iDp~-t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~ 183 (243)
T 3mbr_X 108 WALT--SDDSHLYMSDGTAVIRKLDPD-TLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVV 183 (243)
T ss_dssp CEEE--ECSSCEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEE
T ss_pred eEEe--eCCCEEEEECCCCeEEEEeCC-CCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEE
Confidence 3444 5566666555 7889999998 777777766422 244566665 66666655567889888888 4443
Q ss_pred eeeecceeEEEEEccCCCEEEEEE-ecccCcEEEEEEccCCCeEEEEcC
Q psy11036 161 SSFTGGLDVCIWDMLGGGKLLHKF-TCHHKTVTSLCLASGGKRLISASL 208 (239)
Q Consensus 161 ~~~~~~~~i~~~d~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~ 208 (239)
..+ |+..-....... ..-..-...++++|+++.|+..+.
T Consensus 184 ~~i---------dl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 184 AWI---------DLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEE---------ECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEE---------ECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 333 211100000000 011235688999997666555443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-07 Score=73.11 Aligned_cols=200 Identities=13% Similarity=0.052 Sum_probs=121.9
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGS 85 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 85 (239)
.++.|+.+|.++++.+..+.... ......... +..++.++.++.|..+|..+++.+.......
T Consensus 111 ~~g~l~a~d~~tG~~~W~~~~~~--------------~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 111 EKAQVYALNTSDGTVAWQTKVAG--------------EALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECSS--------------CCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred CCCEEEEEECCCCCEEEEEeCCC--------------ceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCC
Confidence 46889999999999887776553 111111222 3477778889999999999999887764333
Q ss_pred CEE------EEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCc----eE---EEEEcC--CCCEEEEEecCCe
Q psy11036 86 PVE------SVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKT----VT---SLCLAS--GGKRLISASLDHH 149 (239)
Q Consensus 86 ~v~------~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~----i~---~i~~~~--~~~~l~~~~~d~~ 149 (239)
++. ..... ++ .++++. ++.+..+|.. +++.+......... +. .+.-.| .+..++.++.++.
T Consensus 174 ~~~~~~~~~~~~~~-~~-~v~~g~~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~ 250 (376)
T 3q7m_A 174 PSLSLRGESAPTTA-FG-AAVVGGDNGRVSAVLME-QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN 250 (376)
T ss_dssp -----CCCCCCEEE-TT-EEEECCTTTEEEEEETT-TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC
T ss_pred CceeecCCCCcEEE-CC-EEEEEcCCCEEEEEECC-CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE
Confidence 221 11222 34 455555 7899999998 66666555422100 00 010111 2456777778889
Q ss_pred EEEEEcc-cceEeee------------------ecceeEEEEEccCCCEEEEEEec-ccCcEEEEEEccCCCeEEEEcCC
Q psy11036 150 AKIYEMT-LKTVSSF------------------TGGLDVCIWDMLGGGKLLHKFTC-HHKTVTSLCLASGGKRLISASLD 209 (239)
Q Consensus 150 i~i~d~~-~~~~~~~------------------~~~~~i~~~d~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~d 209 (239)
+..+|.+ ++.+... +.++.+..+|..+. +.+..... ....+..... .+..|+.++.+
T Consensus 251 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~ 327 (376)
T 3q7m_A 251 LTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGG-VTLWTQSDLLHRLLTSPVL--YNGNLVVGDSE 327 (376)
T ss_dssp EEEEETTTCCEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETTTC-CEEEEECTTTTSCCCCCEE--ETTEEEEECTT
T ss_pred EEEEECCCCcEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECCCC-cEEEeecccCCCcccCCEE--ECCEEEEEeCC
Confidence 9999886 5444332 22345777887664 44443331 1222222222 25678888899
Q ss_pred ceEEEEEccCCeeeEEecC
Q psy11036 210 HHAKIYEMVNFSPVHTLDY 228 (239)
Q Consensus 210 ~~i~iwd~~~~~~~~~~~~ 228 (239)
|.|..+|..+++.+.....
T Consensus 328 g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 328 GYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp SEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEec
Confidence 9999999999999887764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-07 Score=74.36 Aligned_cols=170 Identities=14% Similarity=0.104 Sum_probs=112.4
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee-------------------CCCeE
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS-------------------YDKTV 67 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-------------------~dg~v 67 (239)
.|.|.++|.++++.+.++..... +..--..+.|+| +++.+++.. .+.+|
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~-----------~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V 230 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRG-----------DQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRI 230 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCT-----------TCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEE
T ss_pred CCeEEEEECCCCeEEEEEccCCC-----------CccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEE
Confidence 47899999999999988874420 002244688899 788888874 46899
Q ss_pred EEEeCCCCCceeeecCC---CCEEEEEE--ecCCcEEEEeC-------CCcEEEEEccCCCeE--EEEE--ecc------
Q psy11036 68 NVYDTRSPDPVMSVNHG---SPVESVLC--LPSGGIFVTGG-------GLDVCIWDMLGGGKL--LHKF--TCH------ 125 (239)
Q Consensus 68 ~vw~~~~~~~~~~~~~~---~~v~~~~~--~~~~~~l~~~~-------~~~i~~~d~~~~~~~--~~~~--~~~------ 125 (239)
.+||+.+++.+.++... .....++| +|++++++++. +++|.+|..+ .+.. .+.+ ...
T Consensus 231 ~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d-~g~~~~~~vIdi~~~~v~~~l 309 (462)
T 2ece_A 231 HFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE-DGKWNAEKVIEIPAEPLEGNL 309 (462)
T ss_dssp EEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE-TTEEEEEEEEEECCEECCSSC
T ss_pred EEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec-CCceeEEEEEeCCCccccccc
Confidence 99999988777777443 34556666 99999877654 3577776655 2321 1111 110
Q ss_pred ----------CCceEEEEEcCCCCEEEEEec-CCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecc------
Q psy11036 126 ----------HKTVTSLCLASGGKRLISASL-DHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH------ 187 (239)
Q Consensus 126 ----------~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h------ 187 (239)
......|.+++||++|.++.. .+.|.+||+. .. ..+.+..+...
T Consensus 310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~------------------~~~lv~~I~tGG~~~~~ 371 (462)
T 2ece_A 310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPF------------------KPVLTGKVKLGGIFHRA 371 (462)
T ss_dssp CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTT------------------SCEEEEEEECBTTTTCB
T ss_pred cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCC------------------CcEEEEEEEeCCeeccc
Confidence 234688999999998887765 6788888875 10 01222222111
Q ss_pred --------cCcEEEEEEccCCCeEEEEc
Q psy11036 188 --------HKTVTSLCLASGGKRLISAS 207 (239)
Q Consensus 188 --------~~~v~~~~~s~~~~~l~s~s 207 (239)
.+.-..++++|||++|+++.
T Consensus 372 ~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 372 DHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 11356789999999998887
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-06 Score=67.19 Aligned_cols=206 Identities=10% Similarity=0.056 Sum_probs=121.5
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGS 85 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 85 (239)
.++.|+.+|.++++.+..+....... ........+.+.-.. .+..++.++.++.|..+|..+++.........
T Consensus 61 ~~g~v~a~d~~tG~~~W~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~ 133 (376)
T 3q7m_A 61 RAGLVKALNADDGKEIWSVSLAEKDG-----WFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG 133 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC--------CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred CCCeEEEEEccCCceeeeecCccccc-----cccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC
Confidence 36789999999999887666532000 000000233222222 34577778889999999999999877664332
Q ss_pred CEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCce-----EEEEEcCCCCEEEEEecCCeEEEEEcc-cc
Q psy11036 86 PVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTV-----TSLCLASGGKRLISASLDHHAKIYEMT-LK 158 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i-----~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~ 158 (239)
.+...-...++ .++++. ++.+..+|.. +++.+.......... ...... +..++.++.++.+..+|.+ ++
T Consensus 134 ~~~~~p~~~~~-~v~v~~~~g~l~~~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~ 209 (376)
T 3q7m_A 134 EALSRPVVSDG-LVLIHTSNGQLQALNEA-DGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQ 209 (376)
T ss_dssp CCCSCCEEETT-EEEEECTTSEEEEEETT-TCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCC
T ss_pred ceEcCCEEECC-EEEEEcCCCeEEEEECC-CCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCc
Confidence 22111111244 444554 7999999998 677666555322111 112222 4567778888999999986 44
Q ss_pred eEeeee-------------------------------cceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEc
Q psy11036 159 TVSSFT-------------------------------GGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS 207 (239)
Q Consensus 159 ~~~~~~-------------------------------~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 207 (239)
.+.... ..+.+..+|..+. +.+.... ......+.. ++..++.++
T Consensus 210 ~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG-~~~w~~~--~~~~~~~~~--~~~~l~~~~ 284 (376)
T 3q7m_A 210 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG-QIMWKRE--LGSVNDFIV--DGNRIYLVD 284 (376)
T ss_dssp EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC-CEEEEEC--CCCEEEEEE--ETTEEEEEE
T ss_pred EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC-cEEeecc--CCCCCCceE--ECCEEEEEc
Confidence 433221 1233666776653 3333332 122334433 356777788
Q ss_pred CCceEEEEEccCCeeeEEec
Q psy11036 208 LDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 208 ~d~~i~iwd~~~~~~~~~~~ 227 (239)
.++.|..+|..+++.+....
T Consensus 285 ~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 285 QNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp TTCCEEEEETTTCCEEEEEC
T ss_pred CCCeEEEEECCCCcEEEeec
Confidence 89999999999999887665
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.8e-07 Score=76.72 Aligned_cols=176 Identities=11% Similarity=0.063 Sum_probs=107.2
Q ss_pred CCEEEEeeCCCcce--eeee--eC-CceeeccceeeccCCCCCeEEEEEecCCCCEEEE-ee---CCCeEEEEeCCCCC-
Q psy11036 7 ILIVALWDIPSEAQ--VSTF--TN-HTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVIS-GS---YDKTVNVYDTRSPD- 76 (239)
Q Consensus 7 dg~i~vwd~~~~~~--~~~~--~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~---~dg~v~vw~~~~~~- 76 (239)
...|++|++.+++. ...+ .. +. .....+.|+| ++++|+. .+ .+..|.++|+.++.
T Consensus 207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~--------------~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDDRLVFGAIPAQH--------------HRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp CCEEEEEETTSCGGGCEEEESCSGGGC--------------CSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred CcEEEEEECCCCcccceEEEecCCCCC--------------eEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 35688888876542 2222 22 33 5578999999 6776643 33 23589999998763
Q ss_pred ceeee-cCCCCEEEEEEecCCcEEE-EeC-C---CcEEEEEccCCCeE--EEEEeccCCceEEEEEcCCCCEEEEEecCC
Q psy11036 77 PVMSV-NHGSPVESVLCLPSGGIFV-TGG-G---LDVCIWDMLGGGKL--LHKFTCHHKTVTSLCLASGGKRLISASLDH 148 (239)
Q Consensus 77 ~~~~~-~~~~~v~~~~~~~~~~~l~-~~~-~---~~i~~~d~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 148 (239)
....+ .+....... +++++..++ .+. + +.|..+|+. .+.. ...+..|...+. .|+++++.|+....++
T Consensus 272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~-~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~ 347 (693)
T 3iuj_A 272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA-NPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVD 347 (693)
T ss_dssp CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETT-SCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEET
T ss_pred ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC-CCCccccEEEecCCCCEE--EEEEECCEEEEEEEEC
Confidence 33333 444444444 566555554 443 2 568888987 3332 345556666655 8889998887766544
Q ss_pred ---eEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEe-cccCcEEEEEEccCCCeEEEEcCC----ceEEEEEccCC
Q psy11036 149 ---HAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFT-CHHKTVTSLCLASGGKRLISASLD----HHAKIYEMVNF 220 (239)
Q Consensus 149 ---~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d----~~i~iwd~~~~ 220 (239)
.|++|++.+. ....+. ...+.+..+.++++++.|+....+ +.++.||+.++
T Consensus 348 g~~~l~~~d~~g~---------------------~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 348 ATARVEQFDYEGK---------------------RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp TEEEEEEECTTSC---------------------EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred CeeEEEEEECCCC---------------------eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 5666666521 222222 234567777888888766554433 78999998777
Q ss_pred ee
Q psy11036 221 SP 222 (239)
Q Consensus 221 ~~ 222 (239)
+.
T Consensus 407 ~~ 408 (693)
T 3iuj_A 407 AI 408 (693)
T ss_dssp CE
T ss_pred eE
Confidence 53
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=4.5e-07 Score=75.86 Aligned_cols=221 Identities=10% Similarity=0.061 Sum_probs=128.0
Q ss_pred CCCEEEEeeCCCcceeeeeeCCc--eee--cccee--ecc-----------CCCCCeEEEEEecCCCCEEEEeeCCC---
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHT--TIY--KVPLM--LYS-----------TPQDYVRAGTVSPVSSDIVISGSYDK--- 65 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~--~~~--~~~~~--~~~-----------~~~~~v~~~~~~~~~~~~l~s~~~dg--- 65 (239)
.+|.|+.+|.++|+.+..+.... ... ..+.. ... ........+++.| ...+++.++.++
T Consensus 176 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w 254 (668)
T 1kv9_A 176 VRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPW 254 (668)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCcc
Confidence 46899999999999988776421 000 00000 000 0001122468888 567777777665
Q ss_pred ----------------eEEEEeCCCCCceeeec---CC-------CCEEEEEEecCCc---EEEEeC-CCcEEEEEccCC
Q psy11036 66 ----------------TVNVYDTRSPDPVMSVN---HG-------SPVESVLCLPSGG---IFVTGG-GLDVCIWDMLGG 115 (239)
Q Consensus 66 ----------------~v~vw~~~~~~~~~~~~---~~-------~~v~~~~~~~~~~---~l~~~~-~~~i~~~d~~~~ 115 (239)
.|..+|.++++.+..+. |. .+.....+..+|+ .++.+. +|.+.++|.+ +
T Consensus 255 ~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~-t 333 (668)
T 1kv9_A 255 NREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRT-N 333 (668)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT-T
T ss_pred ccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECC-C
Confidence 49999999999887763 21 3333333444665 566666 7999999988 7
Q ss_pred CeEEEEEeccCC------------ce------------------------EEEEEcCCCCEEEEEecCCeEEEEEcccc-
Q psy11036 116 GKLLHKFTCHHK------------TV------------------------TSLCLASGGKRLISASLDHHAKIYEMTLK- 158 (239)
Q Consensus 116 ~~~~~~~~~~~~------------~i------------------------~~i~~~~~~~~l~~~~~d~~i~i~d~~~~- 158 (239)
++.+...+.... ++ ..++++|+...+.....+-.......+..
T Consensus 334 G~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~ 413 (668)
T 1kv9_A 334 GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDF 413 (668)
T ss_dssp CCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGC
T ss_pred CCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccc
Confidence 777754432210 00 11456666555555433322111111000
Q ss_pred ----e--E---------e-eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCee
Q psy11036 159 ----T--V---------S-SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 159 ----~--~---------~-~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
. + . .-...+.+..||..+ ++.+-....+ .+.....+...+.+++.++.|+.++.||.++++.
T Consensus 414 ~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 414 VTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 0 0 0 001125688899877 5555444432 2233334455688899999999999999999999
Q ss_pred eEEecCCC
Q psy11036 223 VHTLDYPS 230 (239)
Q Consensus 223 ~~~~~~~~ 230 (239)
+.++..+.
T Consensus 492 l~~~~~~~ 499 (668)
T 1kv9_A 492 LWQFEAQS 499 (668)
T ss_dssp EEEEECSS
T ss_pred heEecCCC
Confidence 99887543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-07 Score=70.62 Aligned_cols=175 Identities=14% Similarity=0.093 Sum_probs=111.3
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGS 85 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~ 85 (239)
++.|..+|.+ ++....+..+. ..+.++...+ ++. +..++.++.|..+|.. ++....+. ...
T Consensus 116 ~~~l~~~d~~-g~~~~~~~~~~--------------~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~ 177 (330)
T 3hxj_A 116 DGHLYAINTD-GTEKWRFKTKK--------------AIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDA 177 (330)
T ss_dssp TSEEEEECTT-SCEEEEEECSS--------------CCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred CCEEEEEcCC-CCEEEEEcCCC--------------ceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence 5677778876 66655555443 4455566665 444 5557778899999988 77665553 334
Q ss_pred CEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeec
Q psy11036 86 PVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTG 165 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 165 (239)
.+.++...+++..++.. +.+..+| . .++...........+.++...++|. +..++.++.+..+|..++.
T Consensus 178 ~~~~~~~d~~g~l~v~t--~~l~~~d-~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g~~------ 246 (330)
T 3hxj_A 178 ITSAASIGKDGTIYFGS--DKVYAIN-P-DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDGTE------ 246 (330)
T ss_dssp CCSCCEECTTCCEEEES--SSEEEEC-T-TSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTSCE------
T ss_pred ceeeeEEcCCCEEEEEe--CEEEEEC-C-CCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCCCE------
Confidence 55666777777766555 8888998 4 5666666665556678888887765 5556667777777654222
Q ss_pred ceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 166 GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 166 ~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
+..+......+..+.+.+++ .|..++.+|.|..+|. +++.+..+.
T Consensus 247 ---------------~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~ 291 (330)
T 3hxj_A 247 ---------------KWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE 291 (330)
T ss_dssp ---------------EEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE
T ss_pred ---------------eEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE
Confidence 22222222223334555555 4566777888999985 677776665
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.4e-06 Score=65.90 Aligned_cols=162 Identities=8% Similarity=-0.054 Sum_probs=102.9
Q ss_pred CeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC--C-CcEEEEEccCCCeEE
Q psy11036 44 YVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG--G-LDVCIWDMLGGGKLL 119 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~-~~i~~~d~~~~~~~~ 119 (239)
....+++.+.++.++++-...+.|.+.++........+ ........++++|.+..|+.+. . +.|..+++. .....
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~ 238 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRR 238 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CCCcE
Confidence 45678888755666677667788999888754433333 2345678999999777666665 3 678888876 32222
Q ss_pred EEEeccCCceEEEEEcCCCCEEEEE-ecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc
Q psy11036 120 HKFTCHHKTVTSLCLASGGKRLISA-SLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS 198 (239)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~ 198 (239)
......-.....|+++|++..|..+ ...+.|..+|+++.. ....+.........+++ .
T Consensus 239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~--------------------~~~~~~~~~~~P~giav-~ 297 (386)
T 3v65_B 239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH--------------------RKAVISQGLPHPFAITV-F 297 (386)
T ss_dssp EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS--------------------CEEEECSSCSSEEEEEE-E
T ss_pred EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe--------------------eEEEEECCCCCceEEEE-E
Confidence 2223333456899999866655554 445678877776211 11111112334567777 4
Q ss_pred CCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 199 GGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 199 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.+.++++-...+.|..++..+|+.+..+.
T Consensus 298 ~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 298 EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 55666777778899999977777766665
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.86 E-value=5e-06 Score=64.02 Aligned_cols=162 Identities=8% Similarity=-0.040 Sum_probs=102.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC--C-CcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG--G-LDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~-~~i~~~d~~~~~~~ 118 (239)
.....+++.+.+++++++-...+.|.+.++........+ ........++++|.+..++.+. . +.|..+++. +..
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~ 193 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSG 193 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCS
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCC
Confidence 345688998756667677677789999998754433333 3345678999999766666555 4 678888876 222
Q ss_pred EEEE-eccCCceEEEEEcCCCCEEEEEe-cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEE
Q psy11036 119 LHKF-TCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL 196 (239)
Q Consensus 119 ~~~~-~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~ 196 (239)
...+ ...-.....++++|++..|..+. ..+.|..+|+++... ...+.........+++
T Consensus 194 ~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~--------------------~~~~~~~~~~P~giav 253 (349)
T 3v64_C 194 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR--------------------KAVISQGLPHPFAITV 253 (349)
T ss_dssp CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------EEEECSSCSSEEEEEE
T ss_pred cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce--------------------EEEEeCCCCCceEEEE
Confidence 2222 22334568999998766555544 456788888762111 1111112234566777
Q ss_pred ccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 197 ASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 197 s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.++.++++-...+.|..++..+|+....+.
T Consensus 254 -~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 254 -FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp -ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred -ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 456666777778889988877777666665
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-05 Score=59.14 Aligned_cols=185 Identities=8% Similarity=0.068 Sum_probs=119.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec--CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCe--
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN--HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGK-- 117 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~-- 117 (239)
..+..++++|+++.++++...++.|...|.. ++....+. .......+++.+++.++++.. ++.+.++++...+.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 6799999999555566667888999999998 88777763 336788999999888766654 68899998874443
Q ss_pred EEEEEe------ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcE
Q psy11036 118 LLHKFT------CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTV 191 (239)
Q Consensus 118 ~~~~~~------~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v 191 (239)
.+.... ..+.....++++|+++.|.++.+.....+|.+++. ....++.+.+.. .. .-..+...+
T Consensus 106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~-----~~~~~l~i~~~~---~~--~~~~~~~d~ 175 (255)
T 3qqz_A 106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGL-----LSSNELHISKDK---AL--QRQFTLDDV 175 (255)
T ss_dssp EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEEST-----TCSSCCEEEECH---HH--HHTCCSSCC
T ss_pred eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccc-----ccCCceeeecch---hh--ccccccCCc
Confidence 223332 12345689999999987777777666666666510 000011111100 00 000122356
Q ss_pred EEEEEccC-CCeEEEEcCCceEEEEEccCCeeeEEecCCC----------CeeeeEecC
Q psy11036 192 TSLCLASG-GKRLISASLDHHAKIYEMVNFSPVHTLDYPS----------PVLSIDVSM 239 (239)
Q Consensus 192 ~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~----------~v~~~~~sp 239 (239)
.+++++|. +++++.....+.+.++|.. |+++..+.... ....|+|.|
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~ 233 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA 233 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC
Confidence 88999994 5666777778899999974 66777666332 456666643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.3e-06 Score=69.37 Aligned_cols=220 Identities=12% Similarity=-0.027 Sum_probs=127.5
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeecc---c-------e-------------eeccCCCC-CeEEEEEecCCCCEEEEe
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKV---P-------L-------------MLYSTPQD-YVRAGTVSPVSSDIVISG 61 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~-------~-------------~~~~~~~~-~v~~~~~~~~~~~~l~s~ 61 (239)
.++.|+.+|.++|+.+..+......... | . ..+..... ....+++.+ ....+..+
T Consensus 174 ~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~ 252 (571)
T 2ad6_A 174 VRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYG 252 (571)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEE
Confidence 3789999999999998877654311000 0 0 00000000 112356666 44455544
Q ss_pred eCC----------------CeEEEEeCCCCCceeeec---CC--------CCEEEEEEecCCc---EEEEeC-CCcEEEE
Q psy11036 62 SYD----------------KTVNVYDTRSPDPVMSVN---HG--------SPVESVLCLPSGG---IFVTGG-GLDVCIW 110 (239)
Q Consensus 62 ~~d----------------g~v~vw~~~~~~~~~~~~---~~--------~~v~~~~~~~~~~---~l~~~~-~~~i~~~ 110 (239)
..+ +.|..+|.++++.+..+. +. .++ -+...++|+ .++.+. +|.+.++
T Consensus 253 ~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~l 331 (571)
T 2ad6_A 253 SGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTL 331 (571)
T ss_dssp CCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEE
T ss_pred CCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEE
Confidence 421 369999999999877663 11 222 223334674 455666 7899999
Q ss_pred EccCCCeEEEEEeccC-------------Cce--------------------------EEEEEcCCCCEEEEEecCCeEE
Q psy11036 111 DMLGGGKLLHKFTCHH-------------KTV--------------------------TSLCLASGGKRLISASLDHHAK 151 (239)
Q Consensus 111 d~~~~~~~~~~~~~~~-------------~~i--------------------------~~i~~~~~~~~l~~~~~d~~i~ 151 (239)
|.. +++.+....... .++ ..++++|+...+.+...+....
T Consensus 332 D~~-tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 410 (571)
T 2ad6_A 332 NRE-NGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMD 410 (571)
T ss_dssp ETT-TCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEE
T ss_pred ECC-CCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccc
Confidence 988 777766554221 111 2357888888888877665544
Q ss_pred EEEcc-----cce-----Eeee--------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEE
Q psy11036 152 IYEMT-----LKT-----VSSF--------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAK 213 (239)
Q Consensus 152 i~d~~-----~~~-----~~~~--------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~ 213 (239)
++..+ +.. ...+ ...+.+..+|..+. +.+.++.. ...+....+...+..++.++.|+.|+
T Consensus 411 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG-~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~ 488 (571)
T 2ad6_A 411 WEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTG-KAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLK 488 (571)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTC-CEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEE
T ss_pred ccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCC-CEEEEecC-CCCccceeEEECCCEEEEEcCCCeEE
Confidence 44332 000 0000 12467888998864 44444432 22222222333466777799999999
Q ss_pred EEEccCCeeeEEecCCC
Q psy11036 214 IYEMVNFSPVHTLDYPS 230 (239)
Q Consensus 214 iwd~~~~~~~~~~~~~~ 230 (239)
.||.++|+.+.+++...
T Consensus 489 a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 489 ALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEETTTCCEEEEEECSS
T ss_pred EEECCCCCEEEEEeCCC
Confidence 99999999999988544
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.5e-07 Score=67.61 Aligned_cols=169 Identities=11% Similarity=0.060 Sum_probs=109.8
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGS 85 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~ 85 (239)
++.|..+|.. ++....+.... ..+.++...+ ++.+.+.. +.|..+| .+++...... ...
T Consensus 156 ~~~l~~~d~~-g~~~~~~~~~~--------------~~~~~~~~d~-~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~ 215 (330)
T 3hxj_A 156 DNYLYAINPD-GTEKWRFKTND--------------AITSAASIGK-DGTIYFGS---DKVYAIN-PDGTEKWNFYAGYW 215 (330)
T ss_dssp TSEEEEECTT-SCEEEEEECSS--------------CCCSCCEECT-TCCEEEES---SSEEEEC-TTSCEEEEECCSSC
T ss_pred CCEEEEECCC-CCEeEEEecCC--------------CceeeeEEcC-CCEEEEEe---CEEEEEC-CCCcEEEEEccCCc
Confidence 4778888887 77666665544 5566777766 56655544 7799999 7777666553 345
Q ss_pred CEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeec
Q psy11036 86 PVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTG 165 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 165 (239)
.+.++...+++...+...++.+..+|. .++.+..+......+..+...+++ .|..++.++.+..+|..
T Consensus 216 ~~~~~~~~~~g~l~v~t~~~gl~~~~~--~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~--------- 283 (330)
T 3hxj_A 216 TVTRPAISEDGTIYVTSLDGHLYAINP--DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD--------- 283 (330)
T ss_dssp CCSCCEECTTSCEEEEETTTEEEEECT--TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTT---------
T ss_pred ceeceEECCCCeEEEEcCCCeEEEECC--CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCC---------
Confidence 677888888887777766788888875 455555555444444555565555 56677778888888754
Q ss_pred ceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCC
Q psy11036 166 GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNF 220 (239)
Q Consensus 166 ~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~ 220 (239)
++....+......+.++...++|+ |..++.+|.+++...+..
T Consensus 284 ------------g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 284 ------------GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp ------------SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred ------------CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 222223333344566667767776 455888999998876543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-05 Score=60.01 Aligned_cols=156 Identities=7% Similarity=-0.091 Sum_probs=96.8
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~ 119 (239)
..+..++|++.++.++++-...+.|..+++........+. .......+++.+.+..|+.+. .+.|.+.++. .....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~ 151 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRK 151 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCceE
Confidence 5578999998556666666677899999988665444332 234557889998665555544 5889999987 33323
Q ss_pred EEEeccCCceEEEEEcCCCCEEEEEe-cC-CeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEc
Q psy11036 120 HKFTCHHKTVTSLCLASGGKRLISAS-LD-HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 197 (239)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~~~~l~~~~-~d-~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s 197 (239)
..+.........++++|.+..|.... .. +.|..+++++.....+ ....-.....++++
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--------------------~~~~~~~PnGla~d 211 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII--------------------ADTHLFWPNGLTID 211 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES--------------------CCSSCSCEEEEEEE
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE--------------------EECCCCCcceEEEe
Confidence 33333345678999999665555443 33 6777777762211111 01112345678888
Q ss_pred cCCCeE-EEEcCCceEEEEEccC
Q psy11036 198 SGGKRL-ISASLDHHAKIYEMVN 219 (239)
Q Consensus 198 ~~~~~l-~s~s~d~~i~iwd~~~ 219 (239)
|++..| ++-+..+.|..+++..
T Consensus 212 ~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 212 YAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCEEEEEECCCCEEEEEeCCC
Confidence 755444 4445567788888754
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.4e-05 Score=59.34 Aligned_cols=204 Identities=12% Similarity=-0.043 Sum_probs=122.0
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC----CCceeeec
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS----PDPVMSVN 82 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~----~~~~~~~~ 82 (239)
...|+..|+++.+....+..- ..+.+++|++.++.++++-..++.|..+++.. ......+.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~---------------~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~ 73 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNL---------------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 73 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSC---------------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred CCeEEEEECCCcceEehhcCC---------------CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe
Confidence 356888888877655544433 56789999985556666666778999999876 22222232
Q ss_pred -CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecC--CeEEEEEccc
Q psy11036 83 -HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD--HHAKIYEMTL 157 (239)
Q Consensus 83 -~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--~~i~i~d~~~ 157 (239)
.......+++.+.+..++.+. .+.|.++++. .......+.........++++|.+..|..+... +.|...++++
T Consensus 74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG 152 (316)
T 1ijq_A 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 152 (316)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC-CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence 224567899987655555543 5889999986 333333333334567899999966655554443 6888888773
Q ss_pred ceEeee------------------------ecceeEEEEEccCCCEE-EEEEecccCcEEEEEEccCCCeEEEEcCCceE
Q psy11036 158 KTVSSF------------------------TGGLDVCIWDMLGGGKL-LHKFTCHHKTVTSLCLASGGKRLISASLDHHA 212 (239)
Q Consensus 158 ~~~~~~------------------------~~~~~i~~~d~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i 212 (239)
.....+ .+...|..+|....... +......-.....+++. .+.++++-...+.|
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V 231 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 231 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeE
Confidence 322221 11122455555432211 11111112335677774 46666777778899
Q ss_pred EEEEccCCeeeEEec
Q psy11036 213 KIYEMVNFSPVHTLD 227 (239)
Q Consensus 213 ~iwd~~~~~~~~~~~ 227 (239)
..++..+++.+..+.
T Consensus 232 ~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 232 FSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEETTTCCCCEEEE
T ss_pred EEEeCCCCcceEEEe
Confidence 999988887666654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.76 E-value=9.4e-07 Score=74.20 Aligned_cols=209 Identities=14% Similarity=0.141 Sum_probs=116.3
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCe-EEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYV-RAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
.++.|+.+|..+|+.+..+............+. ..+ ..+++ .+..++.++.|+.|..+|.++++.+..+...
T Consensus 78 ~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~----~~~~~~~~~---~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~ 150 (689)
T 1yiq_A 78 PFSVVYALDARDGRLIWKYDPQSDRHRAGEACC----DAVNRGVAV---WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTR 150 (689)
T ss_dssp GGGCEEEEETTTCCEEEEECCCCCGGGGGGCTT----CSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCceeEEEcCCCCccccccccc----cCCCCccEE---ECCEEEEEccCCEEEEEECCCCCEeeeecCc
Confidence 357788899999999888765431000000000 000 11223 2457788889999999999999988766321
Q ss_pred ---CCEEEEEEec---CCcEEEEeC------CCcEEEEEccCCCeEEEEEeccC--------------------------
Q psy11036 85 ---SPVESVLCLP---SGGIFVTGG------GLDVCIWDMLGGGKLLHKFTCHH-------------------------- 126 (239)
Q Consensus 85 ---~~v~~~~~~~---~~~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~~-------------------------- 126 (239)
.....+..+| ++..++..+ ++.|..||.+ +++.+-++....
T Consensus 151 ~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~-tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~ 229 (689)
T 1yiq_A 151 ADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAE-TGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVE 229 (689)
T ss_dssp SCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETT-TCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHH
T ss_pred CCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECC-CCcEEEEecccCCCcccccccccccccccccCCceeee
Confidence 1111111112 454444322 4789999998 777766654210
Q ss_pred -----CceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecc----eeEEEEEccCCCEEEEEEec--cc-------
Q psy11036 127 -----KTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGG----LDVCIWDMLGGGKLLHKFTC--HH------- 188 (239)
Q Consensus 127 -----~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~--h~------- 188 (239)
.....++++|+...++.+..++.. |....... ..++ ..+..+|..+ ++.+-.++. |.
T Consensus 230 ~~~g~~~w~~~~~d~~~~~vy~~~~~g~~--w~~~~~~~--~~gd~~y~~~v~AlD~~T-G~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 230 QGGGGTAWDSFAYDPELNLLYIGVGNGSL--WDPKWRSQ--AKGDNLFLSSIVAVNADT-GEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHHHT--TCSCCTTTTEEEEEETTT-CCEEEEEESSTTCCSCCCCC
T ss_pred cCCCCccccceeEcCCCCEEEEeCCCCCc--cccCCCCC--CCCCceeeeeEEEEEccC-CceeEeeecCCcccccccCC
Confidence 011257788888888888777641 22110000 0000 1245555544 333433332 21
Q ss_pred CcEEEEEEccCCC---eEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 189 KTVTSLCLASGGK---RLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 189 ~~v~~~~~s~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.+........+|+ .++.++.+|.++++|.++|+++...+
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 346 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKG 346 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccc
Confidence 1222222223565 78899999999999999999986655
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=7.8e-07 Score=74.54 Aligned_cols=209 Identities=11% Similarity=0.081 Sum_probs=119.3
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC--
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG-- 84 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-- 84 (239)
++.|+-+|..+|+.+..+.........+..+... .-..+++ .+..++.++.|+.|..+|..+++.+..+...
T Consensus 86 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~---~~~~~a~---~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~ 159 (677)
T 1kb0_A 86 WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDV---VNRGVAL---WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEG 159 (677)
T ss_dssp GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCS---CCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEETTTT
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccC---CCCCceE---ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcC
Confidence 5778889999999888776543100000000000 0112333 2457777888999999999999988777422
Q ss_pred ----CCEEEEEEecCCcEEEEeC------CCcEEEEEccCCCeEEEEEeccCCc--------------------------
Q psy11036 85 ----SPVESVLCLPSGGIFVTGG------GLDVCIWDMLGGGKLLHKFTCHHKT-------------------------- 128 (239)
Q Consensus 85 ----~~v~~~~~~~~~~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~-------------------------- 128 (239)
..+...-...++..++... ++.|..+|.+ +++.+-++......
T Consensus 160 ~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~-tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~ 238 (677)
T 1kb0_A 160 QKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAE-TGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEA 238 (677)
T ss_dssp CCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETT-TCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHH
T ss_pred cCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECC-CCcEEEEeccCCCCccccccccccccccccccccCceeEe
Confidence 1221111111344433332 4789999998 77777666532211
Q ss_pred ------eEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecc----eeEEEEEccCCCEEEEEEec--cc-------C
Q psy11036 129 ------VTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGG----LDVCIWDMLGGGKLLHKFTC--HH-------K 189 (239)
Q Consensus 129 ------i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~--h~-------~ 189 (239)
...++++|++..++.+..++.. |....+. ...|+ ..+..+|..+ ++.+-.++. |. .
T Consensus 239 ~~g~~~w~~~~~d~~~~~vy~~~~~~~~--w~~~~~~--~~~gd~~~~~sv~AlD~~T-G~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 239 GGGGTMWDSMTFDAELNTMYVGTGNGSP--WSHKVRS--PKGGDNLYLASIVALDPDT-GKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CEECCCCSCEEEETTTTEEEEECCCEES--SCHHHHS--TTCCCCTTTTEEEEECTTT-CCEEEEEESSTTCCSCCCCCS
T ss_pred CCCcccccceeEcCCCCEEEEECCCCcc--ccCCCCC--ccCCCCeeeEEEEEEECCC-CCEEEEEecCCCcccccccCC
Confidence 1356788888888887766532 2221000 00000 1244555544 333333332 21 1
Q ss_pred cEEEEEEccCC---CeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 190 TVTSLCLASGG---KRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 190 ~v~~~~~s~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
...-+....+| +.++.++.+|.++++|..+|+++..+.
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 22223334477 688999999999999999999988776
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-05 Score=60.62 Aligned_cols=156 Identities=7% Similarity=-0.083 Sum_probs=96.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~ 119 (239)
..+..++|++.++.++++-...+.|..+++........+. .......+++.+.+..|+.+. .+.|.+.++. .....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d-g~~~~ 194 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRK 194 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT-SCSCE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC-CCceE
Confidence 5678999998556666666677899999988665443332 233456788998666555554 5788888886 33333
Q ss_pred EEEeccCCceEEEEEcCCCCEEEEEec-C-CeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEc
Q psy11036 120 HKFTCHHKTVTSLCLASGGKRLISASL-D-HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 197 (239)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s 197 (239)
..+.........+++.|.+..|..... . +.|..+++++.....+ ....-.....|+++
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--------------------~~~~~~~PnGlavd 254 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII--------------------ADTHLFWPNGLTID 254 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--------------------ECSSCSCEEEEEEE
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE--------------------EECCCCCeeeEEEe
Confidence 333333456789999987665555443 3 5677777662211111 11112345678888
Q ss_pred cCCCeE-EEEcCCceEEEEEccC
Q psy11036 198 SGGKRL-ISASLDHHAKIYEMVN 219 (239)
Q Consensus 198 ~~~~~l-~s~s~d~~i~iwd~~~ 219 (239)
|++..| ++-+..+.|..+|+..
T Consensus 255 ~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 255 YAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp GGGTEEEEEETTTTEEEEECTTS
T ss_pred CCCCEEEEEECCCCEEEEEeCCC
Confidence 754444 4445567788887753
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-05 Score=64.35 Aligned_cols=140 Identities=16% Similarity=0.061 Sum_probs=83.9
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEE-EEEecCCCCEEEEee------CCCeEEEEeCCCCCce
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRA-GTVSPVSSDIVISGS------YDKTVNVYDTRSPDPV 78 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~------~dg~v~vw~~~~~~~~ 78 (239)
.|+.|+.+|.++|+.+......... .. ..+.+ ..+. ++ .++.++ .++.|+.+|.++++.+
T Consensus 129 ~dg~l~AlDa~TG~~~W~~~~~~~~---------~~-~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 129 LDGNVAALNAETGETVWKVENSDIK---------VG-STLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp TTSEEEEEETTTCCEEEEEECCCGG---------GT-CBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCCEEEeecCCCCC---------cc-ceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEE
Confidence 4678888999999988766543200 00 01111 1111 33 444444 3799999999999987
Q ss_pred eeecCCCCE---------------------------------------EEEEEecCCcEEEEeC-C--------------
Q psy11036 79 MSVNHGSPV---------------------------------------ESVLCLPSGGIFVTGG-G-------------- 104 (239)
Q Consensus 79 ~~~~~~~~v---------------------------------------~~~~~~~~~~~l~~~~-~-------------- 104 (239)
..+....+. ..+++.++...++.+. +
T Consensus 196 W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~ 275 (599)
T 1w6s_A 196 WRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNK 275 (599)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcc
Confidence 766322111 1345667666776665 3
Q ss_pred --CcEEEEEccCCCeEEEEEeccC----------CceEEEEEc-CCC---CEEEEEecCCeEEEEEcc-cceE
Q psy11036 105 --LDVCIWDMLGGGKLLHKFTCHH----------KTVTSLCLA-SGG---KRLISASLDHHAKIYEMT-LKTV 160 (239)
Q Consensus 105 --~~i~~~d~~~~~~~~~~~~~~~----------~~i~~i~~~-~~~---~~l~~~~~d~~i~i~d~~-~~~~ 160 (239)
+.|..+|.+ +++.+-.++... .++. +... .+| ..++.++.+|.+.++|.+ ++.+
T Consensus 276 y~~sv~Ald~~-TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 276 WTMTIFGRDAD-TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp TSSEEEEEETT-TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred ccceEEEEeCC-CCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 268889998 777766655321 1221 2222 467 467778899999999876 4443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.62 E-value=6.5e-05 Score=56.58 Aligned_cols=191 Identities=9% Similarity=0.046 Sum_probs=113.8
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CC--cEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GL--DVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~--~i~~~d~~~~~~~~ 119 (239)
.....++|++ +++++++-..++.|..+|... +....+.....+..+++.++++++++.. .+ .|..++.. .++..
T Consensus 32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~-~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS-DGTVE 108 (306)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT-TSCEE
T ss_pred CCcceEEECC-CCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCC-CCeEE
Confidence 4577999999 788877777889999999765 3444444556789999999999766553 22 36666765 44433
Q ss_pred EEEe-ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccc--eEe-------------ee-----------------ecc
Q psy11036 120 HKFT-CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLK--TVS-------------SF-----------------TGG 166 (239)
Q Consensus 120 ~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~-------------~~-----------------~~~ 166 (239)
.... ........++..+++..+++-..++.|..+|.... .+. .+ ++.
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~ 188 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEK 188 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTT
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCC
Confidence 2222 11223345555555544554445788888886521 111 00 112
Q ss_pred eeEEEEEccCCCEE--EEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeee--EEecCC-CCeeeeEec
Q psy11036 167 LDVCIWDMLGGGKL--LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPV--HTLDYP-SPVLSIDVS 238 (239)
Q Consensus 167 ~~i~~~d~~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~~-~~v~~~~~s 238 (239)
..|..++....+.. ...+.. ......+++.++|+++++....+.|.+++.. ++.. ..+..+ ....+++|.
T Consensus 189 ~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 189 MLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred CEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEe
Confidence 23555665431110 011110 1234567899999887777778899999975 6553 334433 567888875
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=2.4e-05 Score=64.34 Aligned_cols=164 Identities=12% Similarity=0.035 Sum_probs=96.5
Q ss_pred CeEEEEeCCCCCceeeec---CC--------CCEEEEEEe-cCCc---EEEEeC-CCcEEEEEccCCCeEEEEEeccC--
Q psy11036 65 KTVNVYDTRSPDPVMSVN---HG--------SPVESVLCL-PSGG---IFVTGG-GLDVCIWDMLGGGKLLHKFTCHH-- 126 (239)
Q Consensus 65 g~v~vw~~~~~~~~~~~~---~~--------~~v~~~~~~-~~~~---~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-- 126 (239)
+.|..+|..+++.+..+. |. .++. +... .+|+ .++.++ +|.+.++|.+ +++.+.......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~-tG~~lw~~~~~~~~ 368 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRS-NGKLQNAFPFVDNI 368 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETT-TCCEEEEEESSSCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECC-CCCEecccccccCc
Confidence 689999999999887763 21 1221 2222 4664 566666 7999999998 777776554321
Q ss_pred -----------Cce--------------------------------EEEEEcCCCCEEEEEecCCeEEEEEcc-----cc
Q psy11036 127 -----------KTV--------------------------------TSLCLASGGKRLISASLDHHAKIYEMT-----LK 158 (239)
Q Consensus 127 -----------~~i--------------------------------~~i~~~~~~~~l~~~~~d~~i~i~d~~-----~~ 158 (239)
.++ ..++++|+...+++...+-...++..+ +.
T Consensus 369 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 369 TWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp CSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCC
Confidence 000 124566665566665554444333321 00
Q ss_pred -----eEeee----ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCC
Q psy11036 159 -----TVSSF----TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYP 229 (239)
Q Consensus 159 -----~~~~~----~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 229 (239)
.+... ...+.+..||+.+.. .+-+.... .++..-.....+.+++.++.|+.++.||.++|+.+.+++.+
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~-~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGK-VVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCC-EEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCC-EEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence 00000 124568889988744 33333322 12221122234677888999999999999999999998855
Q ss_pred CCe
Q psy11036 230 SPV 232 (239)
Q Consensus 230 ~~v 232 (239)
+.+
T Consensus 527 ~g~ 529 (582)
T 1flg_A 527 SGI 529 (582)
T ss_dssp SCC
T ss_pred CCc
Confidence 443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.58 E-value=9.5e-05 Score=56.10 Aligned_cols=177 Identities=9% Similarity=-0.046 Sum_probs=106.2
Q ss_pred CCEEEEeeCCCcce--eeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee-ee-c
Q psy11036 7 ILIVALWDIPSEAQ--VSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM-SV-N 82 (239)
Q Consensus 7 dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~-~~-~ 82 (239)
...|+..+++.... ...+..- ..+..++|++.++.++.+-...+.|..+++....... .+ .
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~---------------~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~ 76 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGL---------------EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS 76 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEE---------------EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE
T ss_pred cCeEEEEECCCCceEEEEEecCC---------------CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC
Confidence 45788888876531 1122221 4467999998556677776778899999987654222 22 2
Q ss_pred CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec--CCeEEEEEcccc
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL--DHHAKIYEMTLK 158 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--d~~i~i~d~~~~ 158 (239)
.-.....+++.+.+..|+.+. .+.|.++++. .................+++.|.+..|..... .+.|...++++.
T Consensus 77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 155 (318)
T 3sov_A 77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS 155 (318)
T ss_dssp CCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCccEEEEEcCCCeEEEEECCCCEEEEEECC-CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC
Confidence 234567889998655555554 5889999987 33222223334456789999987666655542 467777776622
Q ss_pred eEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeE-EEEcCCceEEEEEccC
Q psy11036 159 TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL-ISASLDHHAKIYEMVN 219 (239)
Q Consensus 159 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~d~~i~iwd~~~ 219 (239)
....+ ....-.....++++|++..| ++-+..+.|..+|+..
T Consensus 156 ~~~~~--------------------~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 156 SRFII--------------------INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp SCEEE--------------------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CeEEE--------------------EECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 11111 11112345678888755444 4445567788888753
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.57 E-value=0.00013 Score=57.25 Aligned_cols=183 Identities=11% Similarity=-0.058 Sum_probs=109.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC----Cceeeec-CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP----DPVMSVN-HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGG 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~ 115 (239)
..+..++|++.++.++++-...+.|+.+++... .....+. .......+++.+.+..|+.+. .+.|.+.+++ .
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~-g 190 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-G 190 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT-T
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC-C
Confidence 678899999855556666667788999998752 2223332 445678999998555555554 5889999987 4
Q ss_pred CeEEEEEeccCCceEEEEEcCCCCEEEEEec--CCeEEEEEcccceEeee------------------------ecceeE
Q psy11036 116 GKLLHKFTCHHKTVTSLCLASGGKRLISASL--DHHAKIYEMTLKTVSSF------------------------TGGLDV 169 (239)
Q Consensus 116 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~------------------------~~~~~i 169 (239)
......+.........|++.|.+..|..... .+.|...++++.....+ .+...|
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I 270 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEE
Confidence 4333334434455789999997666555442 36788888773222111 111224
Q ss_pred EEEEccCCCEEEEEE-ecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 170 CIWDMLGGGKLLHKF-TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 170 ~~~d~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
..+|+.......... ...-.....+++ ..+.++.+-...+.|..++..+|+.+..+.
T Consensus 271 ~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 271 SSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 444443322111111 111233456666 344566666777889999988887776665
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.57 E-value=0.0001 Score=55.98 Aligned_cols=162 Identities=9% Similarity=-0.054 Sum_probs=101.8
Q ss_pred CeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeEE
Q psy11036 44 YVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~~ 119 (239)
....+++.+.+++++++-...+.|.+.++........+ ........+++.|.+..++.+. .+.|...++. .....
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~ 158 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRF 158 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeE
Confidence 45678888756667777667789999998754333333 3445678999999766555554 3678888876 22222
Q ss_pred EEEeccCCceEEEEEcCCCCEEEEEe-cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc
Q psy11036 120 HKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS 198 (239)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~ 198 (239)
......-.....+++++++..|..+. ..+.|..+|+++... +.+ ..+.......+++.
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~------------------~~~--~~~~~~~P~glav~- 217 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR------------------QAV--VKGSLPHPFALTLF- 217 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------------EEE--ECSCCSCEEEEEEE-
T ss_pred EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce------------------EEE--ecCCCCCceEEEEe-
Confidence 22222334568999999766655554 467788888772111 111 11122345566764
Q ss_pred CCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 199 GGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 199 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.+.++.+-...+.|..++..+|+....+.
T Consensus 218 ~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 218 EDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 34556666678899999988887766665
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=7.2e-05 Score=56.72 Aligned_cols=167 Identities=9% Similarity=0.020 Sum_probs=92.6
Q ss_pred CeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c-------------------CCCCEEEEEEec-CCcEEEEe
Q psy11036 44 YVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N-------------------HGSPVESVLCLP-SGGIFVTG 102 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~-------------------~~~~v~~~~~~~-~~~~l~~~ 102 (239)
...++++.+ +++++.++..++.|..|+..+++..... . ....+..+++.+ ++.++++.
T Consensus 20 ~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 355788998 6787888888899999998765432211 0 013578999998 67666655
Q ss_pred CCCcEEEEEccCCCeEEEEEec-----cCCceEEEEEcC-CCCEEEEEecCCeEEEEEccc--ceEeeeecceeEEEEEc
Q psy11036 103 GGLDVCIWDMLGGGKLLHKFTC-----HHKTVTSLCLAS-GGKRLISASLDHHAKIYEMTL--KTVSSFTGGLDVCIWDM 174 (239)
Q Consensus 103 ~~~~i~~~d~~~~~~~~~~~~~-----~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~i~~~d~ 174 (239)
..+.+..+|.. .+. +..+.. .......+++.+ +|+..++-.... +..+. ..+......+.+..+|.
T Consensus 99 ~~~~i~~~d~~-~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~----~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 99 CYYHLSVVGSE-GGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTL----YDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp TTTEEEEECTT-CEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSS----CCTTCHHHHHHHTCCCEEEEEEET
T ss_pred CCCCEEEEeCC-CCE-EEEecccCCCCcccccceEEEecCCCEEEEECCccc----ccccccceehcccCCCceEEEEeC
Confidence 55558888865 332 222221 113467888888 887655532210 00000 00000001122334443
Q ss_pred cCCCEEEEEEecccCcEEEEEEccCCCeEEEE-cCCceEEEEEccC
Q psy11036 175 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISA-SLDHHAKIYEMVN 219 (239)
Q Consensus 175 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~d~~i~iwd~~~ 219 (239)
.+ ++....... ......++++|++++|..+ +..+.|.+|++..
T Consensus 173 ~~-~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 173 ST-KETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp TT-TEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred CC-CEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 32 221111111 1234578999999865544 6678999999874
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00015 Score=53.01 Aligned_cols=184 Identities=11% Similarity=0.067 Sum_probs=107.8
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce---eee-
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV---MSV- 81 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~---~~~- 81 (239)
.++.|...|.. ++.++.+..... .....+++.+ ++.++++.-.++.+.++++.....+ ...
T Consensus 47 ~~~~I~~ld~~-g~v~~~i~l~g~-------------~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~ 111 (255)
T 3qqz_A 47 KPAAIVEMTTN-GDLIRTIPLDFV-------------KDLETIEYIG-DNQFVISDERDYAIYVISLTPNSEVKILKKIK 111 (255)
T ss_dssp TTEEEEEEETT-CCEEEEEECSSC-------------SSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCCEEEEEEEE
T ss_pred CCCeEEEEeCC-CCEEEEEecCCC-------------CChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCeeeeeeeec
Confidence 35677777876 777776643210 4577888887 6666666556788999987655432 111
Q ss_pred ------cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccC--CCeEEEEEe-------ccCCceEEEEEcCCC-CEEEEE
Q psy11036 82 ------NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLG--GGKLLHKFT-------CHHKTVTSLCLASGG-KRLISA 144 (239)
Q Consensus 82 ------~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~--~~~~~~~~~-------~~~~~i~~i~~~~~~-~~l~~~ 144 (239)
........++|+|.+..|.++. .....+|.... ....+..+. .+...+.+++++|.. ++++..
T Consensus 112 ~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS 191 (255)
T 3qqz_A 112 IPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLS 191 (255)
T ss_dssp CCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEE
T ss_pred cccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEE
Confidence 1234568999999987777776 34445555431 111122221 123457899999955 455566
Q ss_pred ecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 145 SLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 145 ~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
.....+.++|.+++.+..+ .+..+..-+ ..--..-..|+|.++|++.++ ++...++.|.-
T Consensus 192 ~~s~~L~~~d~~g~~~~~~---------~L~~g~~~l---~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 192 HESRALQEVTLVGEVIGEM---------SLTKGSRGL---SHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp TTTTEEEEECTTCCEEEEE---------ECSTTGGGC---SSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred CCCCeEEEEcCCCCEEEEE---------EcCCccCCc---ccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 6677888888773322222 211100000 000124578999999985555 67777777654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.4e-05 Score=65.54 Aligned_cols=207 Identities=16% Similarity=0.123 Sum_probs=114.4
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCe-EEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYV-RAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
.++.|+-+|..+|+.+..+............+. ..+ ..+++. +..++.++.|+.|..+|..+++.+..+...
T Consensus 74 ~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~W~~~~~ 146 (668)
T 1kv9_A 74 SWSRVIAVDAASGKELWRYDPEVAKVKARTSCC----DAVNRGVALW---GDKVYVGTLDGRLIALDAKTGKAIWSQQTT 146 (668)
T ss_dssp GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTT----CSCCCCCEEE---BTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCeEEEEECCCChhceEECCCCCccccccccc----cCCccceEEE---CCEEEEEcCCCEEEEEECCCCCEeeeeccC
Confidence 357788899999998887765431000000000 000 122332 356777888999999999999988766321
Q ss_pred -----CCEEE-EEEecCCcEEEEeC-------CCcEEEEEccCCCeEEEEEeccC-------------------------
Q psy11036 85 -----SPVES-VLCLPSGGIFVTGG-------GLDVCIWDMLGGGKLLHKFTCHH------------------------- 126 (239)
Q Consensus 85 -----~~v~~-~~~~~~~~~l~~~~-------~~~i~~~d~~~~~~~~~~~~~~~------------------------- 126 (239)
..+.. ... .++ .++++. ++.|..+|.+ +++.+-++....
T Consensus 147 ~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~-tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 147 DPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDAD-TGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp CTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETT-TCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred CCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECC-CCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 11111 011 134 444443 3789999998 777776664210
Q ss_pred ------CceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeec----ceeEEEEEccCCCEEEEEEec--cc------
Q psy11036 127 ------KTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTG----GLDVCIWDMLGGGKLLHKFTC--HH------ 188 (239)
Q Consensus 127 ------~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~~~--h~------ 188 (239)
.....+++.|+...++.++.++.. |....... ..+ ...|..+|..+ ++.+-.++. |.
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~--w~~~~~~~--~~gd~l~~~~v~AlD~~t-G~~~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSP--WNREVRSP--GGGDNLYLSSILAIRPDT-GKLAWHYQVTPGDSWDFTA 298 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHHST--TCCCCTTTTEEEEECTTT-CCEEEEEESSTTCCSCCCC
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCc--cccCCCCC--CCCCceeeeeEEEEcCCC-CceeeEeecCCCccccccC
Confidence 011236778877788777766541 21110000 000 01244445444 334333332 21
Q ss_pred -CcEEEEEEccCCC---eEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 189 -KTVTSLCLASGGK---RLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 189 -~~v~~~~~s~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.+.....+..+|+ .++.++.+|.++++|..+|+++...+
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 2222223334665 68889999999999999999986554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00043 Score=58.93 Aligned_cols=165 Identities=15% Similarity=0.036 Sum_probs=103.1
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC--C-CcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG--G-LDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~-~~i~~~d~~~~~~~ 118 (239)
.....|++.+.+++++++-...+.|.+.++........+ ........|+++|.+..|+.+. . +.|...++. ....
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~ 549 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDI 549 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCce
Confidence 456689999855677777777889999998754433333 3445688999999766666554 3 678888886 3333
Q ss_pred EEEEeccCCceEEEEEcCCCCEEEEEe-cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEc
Q psy11036 119 LHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 197 (239)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s 197 (239)
...+...-.....|++.+.+..|..+. ..+.|..+++++.....+ ..-...-.....|++.
T Consensus 550 ~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v------------------~~~~~~l~~P~glav~ 611 (791)
T 3m0c_C 550 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI------------------LEDEKRLAHPFSLAVF 611 (791)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE------------------EECTTTTSSEEEEEEE
T ss_pred EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE------------------ecCCCccCCCCEEEEe
Confidence 333333335678999998766665554 456777777762211111 1001111234466664
Q ss_pred cCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 198 SGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 198 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.+.++++-...+.|...+..+|+.+..+.
T Consensus 612 -~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 612 -EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp -TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred -CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 33555666677889888888887666654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00024 Score=53.84 Aligned_cols=162 Identities=10% Similarity=-0.004 Sum_probs=97.7
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-----CCCCEEEEEEec-CCcEEEEeCC------------
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-----HGSPVESVLCLP-SGGIFVTGGG------------ 104 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~------------ 104 (239)
..+..+++.+.++ .|+.+...+.+..+|..+++...... .......+++.+ +|.+.++...
T Consensus 80 ~~p~gi~~~~~~g-~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 80 GRTYDISYNLQNN-QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CCEEEEEEETTTT-EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCCceEEEcCCCC-cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 3578899987334 44445444558888876553221111 123478899999 9987776532
Q ss_pred ------CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEE-ecCCeEEEEEcccceEeeeecceeEEEEEccCC
Q psy11036 105 ------LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA-SLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGG 177 (239)
Q Consensus 105 ------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~ 177 (239)
+.|..+|.. .++...... .......++++|+++.|..+ ...+.|..|++.+... + .
T Consensus 159 ~~~~~~g~v~~~d~~-~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~----~-----------~ 221 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPS-TKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK----G-----------T 221 (322)
T ss_dssp HHTCCCEEEEEEETT-TTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT----T-----------C
T ss_pred cccCCCceEEEEeCC-CCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC----C-----------c
Confidence 567888875 344322222 22345679999999866555 4568898888772110 0 0
Q ss_pred CEEEEEEecccCcEEEEEEccCCCeEEEEcC----------CceEEEEEccCCeeeEEec
Q psy11036 178 GKLLHKFTCHHKTVTSLCLASGGKRLISASL----------DHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 178 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----------d~~i~iwd~~~~~~~~~~~ 227 (239)
.+.... ..+ ...+++.++|++.++... .+.|..+|. .++.+..+.
T Consensus 222 ~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~ 276 (322)
T 2fp8_A 222 AEVLVK---IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP 276 (322)
T ss_dssp EEEEEE---CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE
T ss_pred cceEEe---CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEE
Confidence 111111 122 667889999887666544 466788876 477777665
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.1e-05 Score=57.72 Aligned_cols=162 Identities=10% Similarity=0.071 Sum_probs=105.7
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee-ecC-------CCCEEEEEE---ecCCcEEEEeC--------
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS-VNH-------GSPVESVLC---LPSGGIFVTGG-------- 103 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~-~~~-------~~~v~~~~~---~~~~~~l~~~~-------- 103 (239)
....+++|++.++.++++.-..++|..|+...+..... +.. ...+..+.+ .|+++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 44558899984455555555899999999875543332 222 113579999 68888877533
Q ss_pred ------CCcEEEEEccC--CCeEEEEEe--cc-----------CCceEEEEEcCCCCEEEEEecC-CeEEEEEcccceEe
Q psy11036 104 ------GLDVCIWDMLG--GGKLLHKFT--CH-----------HKTVTSLCLASGGKRLISASLD-HHAKIYEMTLKTVS 161 (239)
Q Consensus 104 ------~~~i~~~d~~~--~~~~~~~~~--~~-----------~~~i~~i~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~ 161 (239)
+..+..||+.. +++.+.... .. ......++..++|+..++++.. +.|...+.+++.
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-- 170 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-- 170 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC--
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE--
Confidence 35688899860 133333222 11 1247899999999999999888 887777666221
Q ss_pred eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 162 SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 162 ~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
+..|..... ........+.|+++|+|+.|+....+|.+..+|+.+
T Consensus 171 -------~~~~~~~~~------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 -------VSTFAWESG------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp -------EEEEEECCC------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred -------EeeeeecCC------CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 222322110 011123466899999999888887799999999874
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00018 Score=59.17 Aligned_cols=143 Identities=11% Similarity=0.002 Sum_probs=85.5
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEE-EEEecCCCCEEEEeeC------CCeEEEEeCCCCCce
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRA-GTVSPVSSDIVISGSY------DKTVNVYDTRSPDPV 78 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~------dg~v~vw~~~~~~~~ 78 (239)
.++.|+.+|..+|+.+..+........ ..+.+ .... ++ .++.++. ++.|..+|.++++.+
T Consensus 123 ~dg~l~alD~~tG~~~W~~~~~~~~~~----------~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 189 (571)
T 2ad6_A 123 ANGHLLALDAKTGKINWEVEVCDPKVG----------STLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp TTSEEEEEETTTCCEEEEEECCCGGGT----------CBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCCEEEEecCCCCCcc----------ceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCcEE
Confidence 468899999999998877654320000 01111 1111 34 4444443 799999999999987
Q ss_pred eeecCCCCE---------------------------------------EEEEEecCCcEEEEeC-C--------------
Q psy11036 79 MSVNHGSPV---------------------------------------ESVLCLPSGGIFVTGG-G-------------- 104 (239)
Q Consensus 79 ~~~~~~~~v---------------------------------------~~~~~~~~~~~l~~~~-~-------------- 104 (239)
..+....+. ..+++.++...++.+. +
T Consensus 190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce
Confidence 766322111 1356677666666554 2
Q ss_pred --CcEEEEEccCCCeEEEEEecc----------CCceEEEEEcCCCC---EEEEEecCCeEEEEEcc-cceEeee
Q psy11036 105 --LDVCIWDMLGGGKLLHKFTCH----------HKTVTSLCLASGGK---RLISASLDHHAKIYEMT-LKTVSSF 163 (239)
Q Consensus 105 --~~i~~~d~~~~~~~~~~~~~~----------~~~i~~i~~~~~~~---~l~~~~~d~~i~i~d~~-~~~~~~~ 163 (239)
+.|..+|.+ +++.+-.++.. ..++. +...++|+ .++.++.+|.+.++|.+ ++.+...
T Consensus 270 y~~~v~Ald~~-tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 270 WTMTIWGRDLD-TGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp TTTEEEEEETT-TCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eEEEEEEEecC-CCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 248889998 67776666532 12221 22234674 57778889999999987 6555443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.37 E-value=8.2e-05 Score=58.91 Aligned_cols=153 Identities=10% Similarity=0.016 Sum_probs=94.8
Q ss_pred CeEEEEEec-CCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--CC----cEEEEEccCCC
Q psy11036 44 YVRAGTVSP-VSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--GL----DVCIWDMLGGG 116 (239)
Q Consensus 44 ~v~~~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~----~i~~~d~~~~~ 116 (239)
....++++| .++.++++ ...+.|+.+|+..++.............++++++++.|+++. ++ .+..++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 456889997 24554444 444889999988765444445556788999999999666554 22 24444443222
Q ss_pred eEEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEe-cccCcEEEE
Q psy11036 117 KLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFT-CHHKTVTSL 194 (239)
Q Consensus 117 ~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~h~~~v~~~ 194 (239)
.....+.. ......++++| ++..+++-..++.|..++..+ ........ +.......+
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~--------------------~~~~~~~~~~~~~~P~gi 275 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT--------------------QETTPLFTIQDSGWEFHI 275 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT--------------------TEEEEEEECSSSSCCEEE
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC--------------------CcEEEEEEcCCCCcceeE
Confidence 21123322 23456788999 666666666678888888762 11111111 112346789
Q ss_pred EEccCCCe-EEEEcCCceEEEEEcc
Q psy11036 195 CLASGGKR-LISASLDHHAKIYEMV 218 (239)
Q Consensus 195 ~~s~~~~~-l~s~s~d~~i~iwd~~ 218 (239)
+|+|+|++ +++-...+.|..++..
T Consensus 276 a~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 276 QFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEcCCCCEEEEEECCCCEEEEEeCC
Confidence 99999994 5555678899998875
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00086 Score=57.12 Aligned_cols=113 Identities=10% Similarity=-0.095 Sum_probs=74.8
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC----Cceeeec-CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP----DPVMSVN-HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGG 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~ 115 (239)
..+..++|.+.++.++++-...+.|+.+++... .....+. .......|++.+.+..|+.+. .+.|.+.++. .
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-G 502 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-G 502 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-S
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC-C
Confidence 567899999855666667667788999998753 2223332 345667899998887666665 5889999997 3
Q ss_pred CeEEEEEeccCCceEEEEEcCCCCEEEEEec--CCeEEEEEcc
Q psy11036 116 GKLLHKFTCHHKTVTSLCLASGGKRLISASL--DHHAKIYEMT 156 (239)
Q Consensus 116 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--d~~i~i~d~~ 156 (239)
......+.........|++.|.+..|..... .+.|...++.
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d 545 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 545 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence 3333333334456789999997666555543 2678777777
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00055 Score=53.50 Aligned_cols=178 Identities=12% Similarity=0.148 Sum_probs=121.6
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccC
Q psy11036 47 AGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHH 126 (239)
Q Consensus 47 ~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~ 126 (239)
+.-.+| ..+.++.-. ..++.++|+++.+.+..+....+|.--.|-. .+.|+...+..|.-|++.....+.+.+..|.
T Consensus 70 sAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 70 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECCG
T ss_pred eeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecch
Confidence 556788 566666544 6899999999998888887677777777764 5577778888999999986567777776553
Q ss_pred ----CceEEEEEcCCCCEEEEEec-------CCeEEEEEcccceEeeee----------------------------cce
Q psy11036 127 ----KTVTSLCLASGGKRLISASL-------DHHAKIYEMTLKTVSSFT----------------------------GGL 167 (239)
Q Consensus 127 ----~~i~~i~~~~~~~~l~~~~~-------d~~i~i~d~~~~~~~~~~----------------------------~~~ 167 (239)
..|..-..+++.++++..+- .|.+.+|..+.+..+.+. .+.
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~ 226 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 226 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCC
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence 46777788899998876553 478889988733222221 123
Q ss_pred eEEEEEccCC--C------EEEEEEec---ccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 168 DVCIWDMLGG--G------KLLHKFTC---HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 168 ~i~~~d~~~~--~------~~~~~~~~---h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.+.+.++... + +.+..+-. ...-..++..|+....+..-+.-|.|.+||++++.++..-.
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp EEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence 4555555322 0 01110101 12234567788877788888889999999999999987665
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00011 Score=60.50 Aligned_cols=211 Identities=8% Similarity=0.002 Sum_probs=113.3
Q ss_pred CCEEEEeeC-CCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCC---EEEEeeCCCeEEEEeCCCCCceeeec
Q psy11036 7 ILIVALWDI-PSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSD---IVISGSYDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 7 dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~l~s~~~dg~v~vw~~~~~~~~~~~~ 82 (239)
++.|+-+|. .+|+.+..+.........+..+.. .....+++.|.++. +++.++.|+.|..+|.++++.+....
T Consensus 72 ~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~---~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~ 148 (599)
T 1w6s_A 72 PNNTFALGLDDPGTILWQDKPKQNPAARAVACCD---LVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVE 148 (599)
T ss_dssp TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSC---SCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEeCCCCCcEEEEECCCCCcccccccccc---ccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeec
Confidence 577888899 899988777654310000000000 00123455442222 37778889999999999999877653
Q ss_pred CCC-----CEEE-EEEecCCcEEEEeC------CCcEEEEEccCCCeEEEEEeccCCce---------------------
Q psy11036 83 HGS-----PVES-VLCLPSGGIFVTGG------GLDVCIWDMLGGGKLLHKFTCHHKTV--------------------- 129 (239)
Q Consensus 83 ~~~-----~v~~-~~~~~~~~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~i--------------------- 129 (239)
... .+.+ -.. .++..++.++ ++.|.-+|.+ +++.+-++.......
T Consensus 149 ~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~-TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g 226 (599)
T 1w6s_A 149 NSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVK-TGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLG 226 (599)
T ss_dssp CCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETT-TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHH
T ss_pred CCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECC-CCcEEEEEcCCCCccccccccccccccccccccccc
Confidence 211 1211 111 1454444332 5889999998 777776655322110
Q ss_pred -----------------EEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEeccc----
Q psy11036 130 -----------------TSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH---- 188 (239)
Q Consensus 130 -----------------~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~---- 188 (239)
..+++.++...+..+..++.. |+-..+.-..+ -...+..+|..+ ++.+-.++...
T Consensus 227 ~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p--~~~~~r~gd~~-y~~sv~Ald~~T-G~~~W~~q~~~~d~w 302 (599)
T 1w6s_A 227 TGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAP--WNETMRPGDNK-WTMTIFGRDADT-GEAKFGYQKTPHDEW 302 (599)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSC--SCGGGSCSCCT-TSSEEEEEETTT-CCEEEEEESSTTCSS
T ss_pred cccCCCcceecCCCccccceeEeCCCCEEEEeCCCCcc--ccCcccCCCcc-ccceEEEEeCCC-CceeeEeecCCCccc
Confidence 134556666666766655421 22110000000 011344555554 34443333211
Q ss_pred ------CcEEEEEEc-cCC---CeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 189 ------KTVTSLCLA-SGG---KRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 189 ------~~v~~~~~s-~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.++. +... .+| ..++.++.+|.++++|.++|+++....
T Consensus 303 d~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 303 DYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp CCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 1221 2222 467 567788999999999999999988766
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00048 Score=52.44 Aligned_cols=188 Identities=13% Similarity=0.187 Sum_probs=115.6
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecC---CCC---EEEEee-C--CCeEEEEeCC--C
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV---SSD---IVISGS-Y--DKTVNVYDTR--S 74 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~l~s~~-~--dg~v~vw~~~--~ 74 (239)
+.+.+.+||+ +|+.++.+... .+..+..-|. +++ ++++.. . +.+|++|++. +
T Consensus 48 k~~gL~Vydl-~G~~l~~~~~g----------------~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~ 110 (355)
T 3amr_A 48 KKSGLVVYSL-DGKMLHSYNTG----------------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN 110 (355)
T ss_dssp TTTEEEEEET-TSCEEEEECCS----------------CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT
T ss_pred CCCCEEEEcC-CCcEEEEccCC----------------CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC
Confidence 3478999999 88888887642 3555555541 122 233333 3 5789999773 3
Q ss_pred CCceeeec-------CC-CCEEEEEE--ecC-Cc-EEEEeC-CCcEEEEEccC------CCeEEEEEeccCCceEEEEEc
Q psy11036 75 PDPVMSVN-------HG-SPVESVLC--LPS-GG-IFVTGG-GLDVCIWDMLG------GGKLLHKFTCHHKTVTSLCLA 135 (239)
Q Consensus 75 ~~~~~~~~-------~~-~~v~~~~~--~~~-~~-~l~~~~-~~~i~~~d~~~------~~~~~~~~~~~~~~i~~i~~~ 135 (239)
+ .+..+. .. ..+..+++ +|. +. ++++.. +|.+..|++.. ..+.++++.. .+.+..+...
T Consensus 111 ~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvD 188 (355)
T 3amr_A 111 G-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAAD 188 (355)
T ss_dssp C-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEE
T ss_pred C-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEc
Confidence 3 344442 11 45566777 664 44 455555 79999998842 2355666664 4578889999
Q ss_pred CCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEe-c-ccCcEEEEEE--ccCCC-eEEEEc-CC
Q psy11036 136 SGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFT-C-HHKTVTSLCL--ASGGK-RLISAS-LD 209 (239)
Q Consensus 136 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~-h~~~v~~~~~--s~~~~-~l~s~s-~d 209 (239)
+....|..+-++.-|..++.+... . ...+.+.... + -...+..|++ .++++ +|++++ .+
T Consensus 189 d~~g~Lyv~eEd~GIw~~da~p~~--~-------------~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~ 253 (355)
T 3amr_A 189 DEYGRLYIAEEDEAIWKFSAEPDG--G-------------SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN 253 (355)
T ss_dssp TTTTEEEEEETTTEEEEEECSTTS--C-------------SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred CCCCeEEEecccceEEEEeCCcCC--C-------------CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence 888899999888665555543110 0 0122333221 1 1236778877 45555 565555 67
Q ss_pred ceEEEEEcc-CCeeeEEec
Q psy11036 210 HHAKIYEMV-NFSPVHTLD 227 (239)
Q Consensus 210 ~~i~iwd~~-~~~~~~~~~ 227 (239)
.+..+||.. +.+.+..+.
T Consensus 254 ~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 254 SSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp TEEEEEESSTTCCEEEEEE
T ss_pred CEEEEEECCCCCcEEEEEE
Confidence 899999996 778888875
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.29 E-value=4e-06 Score=70.50 Aligned_cols=162 Identities=16% Similarity=0.046 Sum_probs=96.8
Q ss_pred eEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCCCEEEEEEecCCcEEEEeC--C-CcEEEEEccCCCeEEE
Q psy11036 45 VRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG--G-LDVCIWDMLGGGKLLH 120 (239)
Q Consensus 45 v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~-~~i~~~d~~~~~~~~~ 120 (239)
...+++.+.+++++++-...+.|.+.++........+. .......++++|.+..|+.+. . +.|..+++. +....
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d--G~~~~ 532 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIY 532 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS--SCCCC
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC--CCCee
Confidence 45678876466677776677889999987554333332 234567889999766666554 2 678877775 22222
Q ss_pred EE-eccCCceEEEEEcCCCCEEE-EEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc
Q psy11036 121 KF-TCHHKTVTSLCLASGGKRLI-SASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS 198 (239)
Q Consensus 121 ~~-~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~ 198 (239)
.+ ...-.....|+++|++..|. +-...+.|..+++.+.....+ ............|++..
T Consensus 533 ~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~------------------~~~~~~~~~P~glavd~ 594 (699)
T 1n7d_A 533 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI------------------LEDEKRLAHPFSLAVFE 594 (699)
T ss_dssp EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEE------------------CCCSSSCSSCCCCEEET
T ss_pred EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEE------------------EecCCcCCCceEeEEEC
Confidence 22 12223457899998765544 444567788888762111111 10011112233445544
Q ss_pred CCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 199 GGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 199 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
+ .++++....+.|..++..+++.+..+.
T Consensus 595 ~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 595 D-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp T-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred C-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 3 555666677899999998888887775
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0013 Score=54.70 Aligned_cols=161 Identities=9% Similarity=-0.015 Sum_probs=102.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~ 118 (239)
.....+++.+.+++++++-...+.|.+.++........+ ..-.....++++|....|+.+. .+.|...++. ...
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d-G~~- 157 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD-GSE- 157 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCS-
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC-CCc-
Confidence 346688998755667777777789999998754433333 3445678999999655555554 3677777876 322
Q ss_pred EEEEeccCCceEEEEEcCCCCEEEEEe-cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEc
Q psy11036 119 LHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 197 (239)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s 197 (239)
...+...-.....++++++++.|..+. ..+.|..+|+++.. .+. +.........+++.
T Consensus 158 ~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~------------------~~v---~~~~l~~P~glav~ 216 (628)
T 4a0p_A 158 RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN------------------REV---IADDLPHPFGLTQY 216 (628)
T ss_dssp CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------------------CEE---EEECCSCEEEEEEE
T ss_pred eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc------------------eEE---eeccCCCceEEEEE
Confidence 233333445678999999776665554 45778887776211 111 11222334567775
Q ss_pred cCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 198 SGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 198 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
. +.++++-...+.|...|..+++....+.
T Consensus 217 ~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 217 Q-DYIYWTDWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp T-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred C-CEEEEecCCCCEEEEEECCCCCceEEEe
Confidence 4 4555666668899999987777655554
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00054 Score=53.42 Aligned_cols=148 Identities=9% Similarity=0.150 Sum_probs=96.2
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCceeeecCC-----CCEEEEEEecCCcEEEEeCCCcEEEEEccCCC-----------e
Q psy11036 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVNHG-----SPVESVLCLPSGGIFVTGGGLDVCIWDMLGGG-----------K 117 (239)
Q Consensus 54 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~-----------~ 117 (239)
++..++.+ .++.||.-++.....-+.+..+ ..+..+..+|+|.+++..++..|.|..+.... -
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence 55555554 3478888888754434444222 26788999999999999999999999887211 0
Q ss_pred EEEEEec------cCCceEEEEEcCC---CCEEEEEecCCeEEEEEccc---ceEeeeecceeEEEEEccCCCEEEEEEe
Q psy11036 118 LLHKFTC------HHKTVTSLCLASG---GKRLISASLDHHAKIYEMTL---KTVSSFTGGLDVCIWDMLGGGKLLHKFT 185 (239)
Q Consensus 118 ~~~~~~~------~~~~i~~i~~~~~---~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 185 (239)
..+.+.- ...+|..+.|+|- +..|++-..|+.|++||+.. +.. .+ ..... ...+.
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L-----------~k~~~-~fg~d 176 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VL-----------NKPNN-SFGLD 176 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EE-----------SCCCS-EEESC
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-ch-----------hcccc-ccCCC
Confidence 1223332 2467999999995 46899999999999999981 111 22 11111 11222
Q ss_pred cccCcEEEEEEccCCCeEEE--EcCCceEEEE
Q psy11036 186 CHHKTVTSLCLASGGKRLIS--ASLDHHAKIY 215 (239)
Q Consensus 186 ~h~~~v~~~~~s~~~~~l~s--~s~d~~i~iw 215 (239)
.....|.+++|..++-.|.. .+..|.|+-.
T Consensus 177 ~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 177 ARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 33467889999987765555 4466766543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0014 Score=51.88 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=67.6
Q ss_pred CCeEEEEEecCCCCEEEEeeC-CC----eEEEEeCCCCCce--eeecCCCCEEEEEEec-CCcEEEEeC-CCcEEEEEcc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSY-DK----TVNVYDTRSPDPV--MSVNHGSPVESVLCLP-SGGIFVTGG-GLDVCIWDML 113 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~-dg----~v~vw~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~-~~~i~~~d~~ 113 (239)
.....+++++ +++.|+.+.. ++ .+.+.+. .+... ..+........++++| ++.++++-. .+.|..++..
T Consensus 179 ~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~ 256 (430)
T 3tc9_A 179 SKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFT 256 (430)
T ss_dssp SCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred CCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 5688999999 6774444443 22 3333443 33222 2332233456788999 666555554 6889999987
Q ss_pred CCCeEEEEEec-cCCceEEEEEcCCCCEEE-EEecCCeEEEEEcc
Q psy11036 114 GGGKLLHKFTC-HHKTVTSLCLASGGKRLI-SASLDHHAKIYEMT 156 (239)
Q Consensus 114 ~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~-~~~~d~~i~i~d~~ 156 (239)
.......... .......++|+|+|++|. +-...+.|..++.+
T Consensus 257 -~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 257 -TQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp -TTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred -CCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 4443222221 223467899999999544 44567889888876
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.001 Score=50.27 Aligned_cols=154 Identities=6% Similarity=-0.095 Sum_probs=89.9
Q ss_pred CeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCC---CeEEEEEeccCCceEEEEEcCCCC
Q psy11036 65 KTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGG---GKLLHKFTCHHKTVTSLCLASGGK 139 (239)
Q Consensus 65 g~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~---~~~~~~~~~~~~~i~~i~~~~~~~ 139 (239)
..|+..|+.+.+....+.....+..++|++.+..++.+. .+.|..+++... ......+.........+++.+.+.
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 468999998877666666667789999999766666655 588999998621 122222332334557889987554
Q ss_pred E-EEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEc-CC-ceEEEEE
Q psy11036 140 R-LISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS-LD-HHAKIYE 216 (239)
Q Consensus 140 ~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~d-~~i~iwd 216 (239)
. .++-...+.|.++++++..... ...........+++.|.+..|+.+. .. +.|..++
T Consensus 90 ~ly~~d~~~~~I~~~~~~g~~~~~--------------------~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKGVKRKT--------------------LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEE--------------------EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred eEEEEECCCCEEEEEeCCCCceEE--------------------EEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 4 4454567888888877221111 1122224567888888655444333 33 6777777
Q ss_pred ccCCeeeEEec--CCCCeeeeEecC
Q psy11036 217 MVNFSPVHTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 217 ~~~~~~~~~~~--~~~~v~~~~~sp 239 (239)
+. |+....+. .-...+.++++|
T Consensus 150 ~d-G~~~~~~~~~~~~~P~gla~d~ 173 (316)
T 1ijq_A 150 LN-GVDIYSLVTENIQWPNGITLDL 173 (316)
T ss_dssp TT-SCCEEEEECSSCSCEEEEEEET
T ss_pred CC-CCCeEEEEECCCCCceEEEEec
Confidence 64 33333221 223456666653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.16 E-value=7.6e-05 Score=63.39 Aligned_cols=109 Identities=12% Similarity=0.065 Sum_probs=67.1
Q ss_pred CeEEEEEe-cCCCCEEEEe-eCC----CeEEEEeCCCC-Cceee-ecCCCCEEEEEEecCCcEEEEeC-C-----CcEEE
Q psy11036 44 YVRAGTVS-PVSSDIVISG-SYD----KTVNVYDTRSP-DPVMS-VNHGSPVESVLCLPSGGIFVTGG-G-----LDVCI 109 (239)
Q Consensus 44 ~v~~~~~~-~~~~~~l~s~-~~d----g~v~vw~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~-----~~i~~ 109 (239)
.+...+|+ | ++++|+-+ ..+ .+|+++|+.++ +.+.. +. .....+.|+|+++.|+... + ..|.+
T Consensus 175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57789999 9 77776643 223 35999999988 63211 11 1134678999998777665 3 24777
Q ss_pred EEccCCCe--EEEEEe-ccCCceEEEEEcCCCCEEEEEecC---CeEEEEEcc
Q psy11036 110 WDMLGGGK--LLHKFT-CHHKTVTSLCLASGGKRLISASLD---HHAKIYEMT 156 (239)
Q Consensus 110 ~d~~~~~~--~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~ 156 (239)
+++. +.+ ....+. ........+.|+|||++|+..+.+ ..|.++|+.
T Consensus 252 ~~lg-t~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 252 HVMG-KLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp EETT-SCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred EECC-CCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 7776 322 122222 223346678999999988876533 234444443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00022 Score=60.57 Aligned_cols=119 Identities=8% Similarity=0.026 Sum_probs=68.4
Q ss_pred EEEEeeCCCc-ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC-----CeEEEEeCCCCCce--ee
Q psy11036 9 IVALWDIPSE-AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD-----KTVNVYDTRSPDPV--MS 80 (239)
Q Consensus 9 ~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~v~vw~~~~~~~~--~~ 80 (239)
.|+++|+.++ +.+. ..-. .....++|+| +++.|+....| ..|.++++.+++.. ..
T Consensus 202 ~l~v~dl~~g~~~l~---~~~~-------------~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv 264 (751)
T 2xe4_A 202 TIEFKRISDPSQTIA---DKVS-------------GTNGEIVWGP-DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCL 264 (751)
T ss_dssp EEEEEETTCTTCCCC---CCEE-------------EECSCCEECS-STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEE
T ss_pred EEEEEECCCCCEeCC---cccc-------------CceeeEEEec-CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEE
Confidence 5888898887 5321 1100 1123678999 66666555554 36888888776432 22
Q ss_pred e--cCCCCEEEEEEecCCcEEEEeC----CCcEEEEEccCCC-eE-EEEE-eccCCceEEEEEcCCCCEEEEEe
Q psy11036 81 V--NHGSPVESVLCLPSGGIFVTGG----GLDVCIWDMLGGG-KL-LHKF-TCHHKTVTSLCLASGGKRLISAS 145 (239)
Q Consensus 81 ~--~~~~~v~~~~~~~~~~~l~~~~----~~~i~~~d~~~~~-~~-~~~~-~~~~~~i~~i~~~~~~~~l~~~~ 145 (239)
+ ........+.|+|+|++|+... ...|.++|+.... +. +..+ .........+.|+. |+.|+..+
T Consensus 265 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t 337 (751)
T 2xe4_A 265 YEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILT 337 (751)
T ss_dssp EECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEE
T ss_pred EecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEe
Confidence 2 2334467889999999888665 2458888887321 22 1333 22344555555544 44444433
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=67.32 Aligned_cols=156 Identities=10% Similarity=-0.090 Sum_probs=88.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC----CCceeeec-CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS----PDPVMSVN-HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGG 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~----~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~ 115 (239)
..+..++|.+.++.++++-...+.|+.+++.. ......+. .......+++.+.+..|+.+. .+.|.++++. .
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d-g 484 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-G 484 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS-S
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC-C
Confidence 45668999984445555555678899999875 22222221 223345678886555555554 5889999986 3
Q ss_pred CeEEEEEeccCCceEEEEEcCCCCEEEEEec--CCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEE
Q psy11036 116 GKLLHKFTCHHKTVTSLCLASGGKRLISASL--DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTS 193 (239)
Q Consensus 116 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~ 193 (239)
......+.........+++.|.+.+|+.... .+.|..+++.+.....+ ....-.....
T Consensus 485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l--------------------~~~~l~~PnG 544 (699)
T 1n7d_A 485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL--------------------VTENIQWPNG 544 (699)
T ss_dssp CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE--------------------SCSSCSSCCC
T ss_pred CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE--------------------EeCCCCCccE
Confidence 3322222322345678899986655554432 25676666652111111 0111223456
Q ss_pred EEEccCCC-eEEEEcCCceEEEEEccC
Q psy11036 194 LCLASGGK-RLISASLDHHAKIYEMVN 219 (239)
Q Consensus 194 ~~~s~~~~-~l~s~s~d~~i~iwd~~~ 219 (239)
|+++|++. ++++-+..+.|..+++..
T Consensus 545 lavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 545 ITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp EEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred EEEeccCCEEEEEecCCCeEEEEccCC
Confidence 88888644 445555677888888754
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0026 Score=52.83 Aligned_cols=178 Identities=8% Similarity=-0.072 Sum_probs=107.2
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecC-CC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNH-GS 85 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~ 85 (239)
...|+..++++......+.... -..+..++|++.++.++++-..++.|..+++........+.. ..
T Consensus 14 ~~~I~~i~l~~~~~~~~~~~~~-------------~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~ 80 (628)
T 4a0p_A 14 RADIRRISLETNNNNVAIPLTG-------------VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD 80 (628)
T ss_dssp TTEEEEEESSCTTCEEECCCCS-------------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred CCcEEEEECCCCCcceEEEcCC-------------CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC
Confidence 4567777776554333332211 046889999995566666767789999999875544333332 24
Q ss_pred CEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec--CCeEEEEEcccceEe
Q psy11036 86 PVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL--DHHAKIYEMTLKTVS 161 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~ 161 (239)
....+++.+.+..|+.+. .+.|.+.++. .......+...-.....|++.|....|..... .+.|...++++....
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLD-GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecC-CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 577899998766666555 4889999987 32222222233445689999986555555442 466776666622111
Q ss_pred eeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEE-EEcCCceEEEEEccC
Q psy11036 162 SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLI-SASLDHHAKIYEMVN 219 (239)
Q Consensus 162 ~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~d~~i~iwd~~~ 219 (239)
.+ ...-.....|+++++++.|. +-...+.|..+|+..
T Consensus 160 ~l---------------------~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 160 TL---------------------VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp EE---------------------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EE---------------------ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 11 11234466778877655443 444566777777754
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0013 Score=54.50 Aligned_cols=163 Identities=9% Similarity=-0.061 Sum_probs=98.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~ 118 (239)
.....+++.+.+++++++-...+.|.+.++........+ ..-.....++++|.+..|+.+. .+.|...++. ....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~ 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSR 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCce
Confidence 567899999855667777777899999998755433333 3445577899999766555554 3567777775 2222
Q ss_pred EEEEeccCCceEEEEEcCCCCEEEEEe-cCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEc
Q psy11036 119 LHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 197 (239)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s 197 (239)
.......-.....+++++++..|..+. ..+.|..+|+++.....+ ..+.......+++.
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~--------------------~~~~~~~P~gi~~~ 222 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV--------------------VKGSLPHPFALTLF 222 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------------------------CCCEEES
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEE--------------------EeCCCCCceEEEEe
Confidence 222323344578999998766555543 456777777763221111 01011112355665
Q ss_pred cCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 198 SGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 198 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.+ .++.+-...+.|...|..+++....+.
T Consensus 223 ~~-~ly~td~~~~~V~~~d~~tg~~~~~i~ 251 (619)
T 3s94_A 223 ED-ILYWTDWSTHSILACNKYTGEGLREIH 251 (619)
T ss_dssp SS-EEEEECTTTCSEEEEESSSCCCCEECC
T ss_pred CC-EEEEecCCCCEEEEEECCCCcccEEEe
Confidence 54 455555567889999988887665554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.003 Score=52.40 Aligned_cols=157 Identities=8% Similarity=-0.066 Sum_probs=94.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc-eeeec-CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP-VMSVN-HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~ 118 (239)
.....++|++.++.++++-...+.|..+++..... ...+. .-.....+++.+.+..++.+. .+.|.+.++. ....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~ 118 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLR 118 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSC
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCE
Confidence 56789999995555666655678899999875532 22232 235788999999766666655 5889999997 3322
Q ss_pred EEEEeccCCceEEEEEcCCCCEEEEEec--CCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEE
Q psy11036 119 LHKFTCHHKTVTSLCLASGGKRLISASL--DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL 196 (239)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~ 196 (239)
.............|++.|.+..|..... .+.|...++++.....+ ....-.....|++
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l--------------------~~~~~~~P~Glal 178 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII--------------------INSEIYWPNGLTL 178 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--------------------ECSSCSSEEEEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE--------------------EeCCCCCCcEEEE
Confidence 2223234445678999997655555443 35666666552211111 1112344678888
Q ss_pred ccCCCeE-EEEcCCceEEEEEccCC
Q psy11036 197 ASGGKRL-ISASLDHHAKIYEMVNF 220 (239)
Q Consensus 197 s~~~~~l-~s~s~d~~i~iwd~~~~ 220 (239)
+++++.| ++-+..+.|..+|+...
T Consensus 179 d~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 179 DYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp ETTTTEEEEEETTTCCEEEESSSCC
T ss_pred EccCCEEEEEeCCCCeEEEecCCCC
Confidence 8865544 44455677888877543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0044 Score=53.00 Aligned_cols=159 Identities=9% Similarity=0.088 Sum_probs=102.7
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-------CCCCEEEEEEecCCcEEEEeCCCcEEEEEccCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-------HGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGG 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~ 115 (239)
..|.++...+ ++. |..|+.++-|..++..+........ ....|.++...++|.+.+...++.|..|+.. .
T Consensus 310 ~~i~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~-~ 386 (795)
T 4a2l_A 310 RSVRSIFMDS-QGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPI-T 386 (795)
T ss_dssp SCEEEEEECT-TSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTT-T
T ss_pred CcEEEEEEeC-CcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCC-C
Confidence 6799998887 454 5557777778888876554322111 2356999999999988876667789999876 3
Q ss_pred CeEEEEEe---------ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec
Q psy11036 116 GKLLHKFT---------CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC 186 (239)
Q Consensus 116 ~~~~~~~~---------~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 186 (239)
++ ...+. .....|.++...++++.|..|+.++-+..+|.+......+ .... . ..
T Consensus 387 ~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~---------~~~~-~------~l 449 (795)
T 4a2l_A 387 QR-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENF---------NQRN-S------QL 449 (795)
T ss_dssp CC-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEE---------CTTT-S------CC
T ss_pred Cc-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEe---------ecCC-C------Cc
Confidence 33 22222 1235788999888887567777777788888762222222 0000 0 01
Q ss_pred ccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeee
Q psy11036 187 HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPV 223 (239)
Q Consensus 187 h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~ 223 (239)
....|.++...++|++.+... + -+.+||..+++..
T Consensus 450 ~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~ 484 (795)
T 4a2l_A 450 VNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFT 484 (795)
T ss_dssp SCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEE
T ss_pred CCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEE
Confidence 345688998888888666554 4 4888998776543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0025 Score=49.96 Aligned_cols=161 Identities=5% Similarity=-0.106 Sum_probs=92.8
Q ss_pred EEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCC---CeEEEEEeccCCceEE
Q psy11036 57 IVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGG---GKLLHKFTCHHKTVTS 131 (239)
Q Consensus 57 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~---~~~~~~~~~~~~~i~~ 131 (239)
+|+.+. ...|+..++........+.....+..++|++.+..|+.+. .+.|..+++... ......+.........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 444433 4689999998776655556667889999999777666665 588888888621 1223333334456788
Q ss_pred EEEcCCC-CEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEc-C-
Q psy11036 132 LCLASGG-KRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS-L- 208 (239)
Q Consensus 132 i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~- 208 (239)
+++.+.+ ++.++-...+.|.+.++++.... ..+...-.....+++.|.+.+|+.+. .
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~--------------------~l~~~~~~~P~~iavdp~~g~ly~td~~~ 223 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--------------------TLFRENGSKPRAIVVDPVHGFMYWTDWGT 223 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCSEE--------------------EEEECSSCCEEEEEEETTTTEEEEEECSS
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCCCceE--------------------EEEeCCCCCcceEEEecccCeEEEEeCCC
Confidence 9998744 44455555678888887722111 11122223466788887555444333 2
Q ss_pred CceEEEEEccCCeeeEEec-CCCCeeeeEec
Q psy11036 209 DHHAKIYEMVNFSPVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 209 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s 238 (239)
.+.|...++........+. .-...+.|+++
T Consensus 224 ~~~I~~~~~dG~~~~~~~~~~l~~P~glavd 254 (400)
T 3p5b_L 224 PAKIKKGGLNGVDIYSLVTENIQWPNGITLD 254 (400)
T ss_dssp SCCEEEEETTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCEEEEEeCCCCccEEEEECCCCceEEEEEE
Confidence 3567777764332222222 12345555554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0007 Score=53.64 Aligned_cols=154 Identities=8% Similarity=-0.001 Sum_probs=91.3
Q ss_pred CeEEEEEecC--CCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCC-----cEEEEEccCCC
Q psy11036 44 YVRAGTVSPV--SSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGL-----DVCIWDMLGGG 116 (239)
Q Consensus 44 ~v~~~~~~~~--~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----~i~~~d~~~~~ 116 (239)
....++++|+ +++++++ ...+.|+.++..+++.............+++++++.++++...+ .+...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999983 3444444 33388999999877655544555668999999999955554321 13333332111
Q ss_pred eEEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEE
Q psy11036 117 KLLHKFTCHHKTVTSLCLAS-GGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSL 194 (239)
Q Consensus 117 ~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~ 194 (239)
.....+. .......++++| ++.++++-..++.|+.+|.. +.....+ .. .+....-..+
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~------------------~~-~~~~~~~~~i 278 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE------------------VM-MDTKGSNFHI 278 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE------------------EE-CSCCSSCEEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE------------------ec-cCCCCCcccE
Confidence 1111222 234456788999 66666565567788888776 2211111 00 1111223469
Q ss_pred EEccCCCe-EEEEcCCceEEEEEcc
Q psy11036 195 CLASGGKR-LISASLDHHAKIYEMV 218 (239)
Q Consensus 195 ~~s~~~~~-l~s~s~d~~i~iwd~~ 218 (239)
+|+|++++ +++-...+.|+.+++.
T Consensus 279 a~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 279 VWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEBC
T ss_pred EEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 99999984 4555667899998865
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00052 Score=56.51 Aligned_cols=140 Identities=14% Similarity=0.086 Sum_probs=83.2
Q ss_pred CEEEEeeCCCcceeeeeeCCc-eeeccceeeccCCCCCeEEEEEe-cCCC---CEEEEeeCCCeEEEEeCCCCCceeeec
Q psy11036 8 LIVALWDIPSEAQVSTFTNHT-TIYKVPLMLYSTPQDYVRAGTVS-PVSS---DIVISGSYDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~-~~~~---~~l~s~~~dg~v~vw~~~~~~~~~~~~ 82 (239)
+.|..+|.++|+.+..++... ..+ .+.....++. +... . ++ ..++.++.+|.++++|.++++.+..+.
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~w-----d~~~~~~p~l-~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAW-----DFSGNNELVL-FDYKAK-DGKIVKATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCS-----CCCCCCCCEE-EEEECS-SSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcc-----cccCCCCcEE-EeeecC-CCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence 689999999999988876421 000 0000012222 2222 3 45 378889999999999999998776552
Q ss_pred CCC--------------CE--------------------------------EEEEEecCCcEEEEeC-------------
Q psy11036 83 HGS--------------PV--------------------------------ESVLCLPSGGIFVTGG------------- 103 (239)
Q Consensus 83 ~~~--------------~v--------------------------------~~~~~~~~~~~l~~~~------------- 103 (239)
... ++ ..++++|+...+++..
T Consensus 364 ~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~ 443 (582)
T 1flg_A 364 FVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVS 443 (582)
T ss_dssp SSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCC
T ss_pred cccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeeccccc
Confidence 111 00 1235566544443321
Q ss_pred ---------------------CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 104 ---------------------GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 104 ---------------------~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
.|.|.-||+. +++.+-+.... .++..-.....+..++.++.|+.++.||.+
T Consensus 444 ~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~-tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~ 515 (582)
T 1flg_A 444 YTKGSAYLGMGFRIKRMYDDHVGSLRAMDPV-SGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAK 515 (582)
T ss_dssp CCTTSCCCCEEEEEEESCSSCSEEEEEECTT-TCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETT
T ss_pred ccCCCceeccceeecCCCCCCcceEEEEECC-CCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECC
Confidence 3678888988 66666555432 222221122246677789999999999987
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0077 Score=51.50 Aligned_cols=157 Identities=10% Similarity=0.041 Sum_probs=100.7
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-----CCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCe
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-----HGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGK 117 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~ 117 (239)
..|.++...+ ++++|..|+.++-|..+|..+++...... ....|.++...+++.+.+... +.+.+||.. .++
T Consensus 406 ~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~-~~~ 482 (795)
T 4a2l_A 406 NNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPE-QRS 482 (795)
T ss_dssp SCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETT-TTE
T ss_pred ccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCC-CCe
Confidence 6799999887 66646677877789999988776433221 245789999988888777766 568889986 443
Q ss_pred EEEEEec-------cCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCc
Q psy11036 118 LLHKFTC-------HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKT 190 (239)
Q Consensus 118 ~~~~~~~-------~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~ 190 (239)
. ..+.. ....|.++...++|+..+.. . +-+..||...... .+.. .... -......
T Consensus 483 ~-~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~-~~~~---------~~~~-----~~l~~~~ 544 (795)
T 4a2l_A 483 F-TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI-QKAS---------ILPV-----SNVTKLF 544 (795)
T ss_dssp E-EECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE-EECC---------CSCS-----CGGGGSC
T ss_pred E-EEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE-EEec---------CCCC-----CCCCCCe
Confidence 2 22221 23578899988888765544 4 4477777762211 1100 0000 0123457
Q ss_pred EEEEEEccCCCeEEEEcCCceEEEEEccCCee
Q psy11036 191 VTSLCLASGGKRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 191 v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
|.++...++|++.++.. . -|..||..+++.
T Consensus 545 i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 545 TNCIYEASNGIIWVGTR-E-GFYCFNEKDKQI 574 (795)
T ss_dssp EEEEEECTTSCEEEEES-S-CEEEEETTTTEE
T ss_pred eEEEEECCCCCEEEEeC-C-CceeECCCCCcE
Confidence 88999888888666554 3 577888876654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0038 Score=46.82 Aligned_cols=140 Identities=8% Similarity=0.035 Sum_probs=80.8
Q ss_pred EEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc-eee--------e--cCCCCEEEEEEecCCcEEEEeC--CCcEEEEEc
Q psy11036 46 RAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP-VMS--------V--NHGSPVESVLCLPSGGIFVTGG--GLDVCIWDM 112 (239)
Q Consensus 46 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~-~~~--------~--~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~ 112 (239)
..++..+ ++..+++-..++.|.++|..+++. +.. . ..-.....+ +|++..++++. .+.|..+++
T Consensus 120 ~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~ 196 (306)
T 2p4o_A 120 NGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPV 196 (306)
T ss_dssp EEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEB
T ss_pred CcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEe
Confidence 3444444 444555555678898888765421 110 0 111234555 78887777665 588999998
Q ss_pred cCCCeE--EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCc
Q psy11036 113 LGGGKL--LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKT 190 (239)
Q Consensus 113 ~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~ 190 (239)
...+.. ...+.. ......+++.++|+++++....+.|.++|..++.. .+..+......
T Consensus 197 ~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~-------------------~~~~~~~~~~~ 256 (306)
T 2p4o_A 197 DSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTT-------------------IIAQAEQGVIG 256 (306)
T ss_dssp CTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEE-------------------EEECGGGTCTT
T ss_pred CCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEE-------------------EEeecccccCC
Confidence 632221 112211 13456788999998777776778888887652110 01111222345
Q ss_pred EEEEEEc---cCCCeEEEEcC
Q psy11036 191 VTSLCLA---SGGKRLISASL 208 (239)
Q Consensus 191 v~~~~~s---~~~~~l~s~s~ 208 (239)
.++++|. |+++.|+.++.
T Consensus 257 p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 257 STAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEEEEECCSTTTTTEEEEEEC
T ss_pred ceEEEEecccCCCCEEEEECC
Confidence 7899998 88776655543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0027 Score=53.04 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=69.9
Q ss_pred EEEEecCCCCEEEEeeCCC-----------eEEEEeCCCCCcee--eec--CCCCEEEEEEecCCcEEEEeC--CCcEEE
Q psy11036 47 AGTVSPVSSDIVISGSYDK-----------TVNVYDTRSPDPVM--SVN--HGSPVESVLCLPSGGIFVTGG--GLDVCI 109 (239)
Q Consensus 47 ~~~~~~~~~~~l~s~~~dg-----------~v~vw~~~~~~~~~--~~~--~~~~v~~~~~~~~~~~l~~~~--~~~i~~ 109 (239)
..++.+.++++++.|+.+. .+.+||..+++... .+. ......++++.+++++++.|+ +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 5566653577888877543 58899998876433 221 223344567788999999998 368999
Q ss_pred EEccCCCeEEEEEeccCC-ceEEEEEcCCCCEEEEEe-cC-----CeEEEEEcc
Q psy11036 110 WDMLGGGKLLHKFTCHHK-TVTSLCLASGGKRLISAS-LD-----HHAKIYEMT 156 (239)
Q Consensus 110 ~d~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~-~d-----~~i~i~d~~ 156 (239)
||.. ..+-...-..+.. .-.+++..++++.++.|+ .+ ..+.+||..
T Consensus 270 yd~~-t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 270 YDSS-SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp EEGG-GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ecCc-CCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 9997 4332221111111 123455667899999998 34 568999987
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0024 Score=51.18 Aligned_cols=161 Identities=9% Similarity=0.018 Sum_probs=94.8
Q ss_pred CeEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCceeeecC----CCCEEEEEE-------ecCCcEEEEeCC-C-c---
Q psy11036 44 YVRAGTVSPV-SSDIVISGSYDKTVNVYDTRSPDPVMSVNH----GSPVESVLC-------LPSGGIFVTGGG-L-D--- 106 (239)
Q Consensus 44 ~v~~~~~~~~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~----~~~v~~~~~-------~~~~~~l~~~~~-~-~--- 106 (239)
....|+|.|. +++++++....+.|++.|+.++........ ......++| ++++..|+++.+ + .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 455666655557899999887665444322 235899999 999997777663 2 2
Q ss_pred ---EEEEEccCCCeEE-----EEEeccCCceEEEEEcCC-CCEEEEEecCCeEEEEEcc-------cceEe-----eeec
Q psy11036 107 ---VCIWDMLGGGKLL-----HKFTCHHKTVTSLCLASG-GKRLISASLDHHAKIYEMT-------LKTVS-----SFTG 165 (239)
Q Consensus 107 ---i~~~d~~~~~~~~-----~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~-------~~~~~-----~~~~ 165 (239)
|.+++....+... ..+.... ....++++|+ +.++++-..++.|..+|+. ...+. ...|
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 5566533211211 2222222 3357888995 4555566677888888875 12110 0000
Q ss_pred ceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCe-EEEEcCCceEEEEEc
Q psy11036 166 GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR-LISASLDHHAKIYEM 217 (239)
Q Consensus 166 ~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~d~~i~iwd~ 217 (239)
..+.+... +.......++|+|+|++ +++-+..+.|+.++.
T Consensus 299 -----------~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 299 -----------TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp -----------TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred -----------ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 00111111 22344678999999995 455567789998665
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0044 Score=49.07 Aligned_cols=170 Identities=12% Similarity=0.068 Sum_probs=95.7
Q ss_pred eEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee---cCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCC-CeE
Q psy11036 45 VRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV---NHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGG-GKL 118 (239)
Q Consensus 45 v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~-~~~ 118 (239)
...++++|.++.++++-..++.|+.++..++.....+ ........++++|+++.|+.+. .+.|..++.... +..
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~ 309 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL 309 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc
Confidence 3457788855666666667788999998877652322 2223345799999999666655 578998886521 111
Q ss_pred --EEEEecc---------------CCceEEEEE---------cCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEE
Q psy11036 119 --LHKFTCH---------------HKTVTSLCL---------ASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172 (239)
Q Consensus 119 --~~~~~~~---------------~~~i~~i~~---------~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~ 172 (239)
...+.+. -.....+++ .++|.++++-...+.|+.++..+ .+..+.|......+
T Consensus 310 ~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G-~v~t~~G~g~~~~~ 388 (433)
T 4hw6_A 310 AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEG-RVTTYAGRGNSREW 388 (433)
T ss_dssp CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTS-EEEEEECCCTTCSS
T ss_pred CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCC-CEEEEEeCCCCCcc
Confidence 1122111 123566888 66666666666667787777543 22222221100000
Q ss_pred EccCCCEEEEEEecccCcEEEEEEc-cCCCeEEEEcCCceEEEEEcc
Q psy11036 173 DMLGGGKLLHKFTCHHKTVTSLCLA-SGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 173 d~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~d~~i~iwd~~ 218 (239)
-.. .+... ....-.....|++. ++|.++++-...+.|+.++++
T Consensus 389 G~~-dG~~~--~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 389 GYV-DGELR--SQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CCB-CEETT--TTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ccC-CCccc--cccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 000 00000 00011346789999 677777777778889888764
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0057 Score=46.62 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=103.9
Q ss_pred CCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecC----CcE--EEEeC--C---CcEEEEEccCCCeEEEEEe
Q psy11036 55 SDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPS----GGI--FVTGG--G---LDVCIWDMLGGGKLLHKFT 123 (239)
Q Consensus 55 ~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l~~~~--~---~~i~~~d~~~~~~~~~~~~ 123 (239)
..+++.....+-+.+||+ +++.+..+.. +.+..+..-|. |+. ++.++ + ++|.+|++......+..+.
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 456676677889999999 7888888754 67788777763 222 33333 3 5799998842233354442
Q ss_pred c------cC-CceEEEEE--cCC-CC-EEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEE
Q psy11036 124 C------HH-KTVTSLCL--ASG-GK-RLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVT 192 (239)
Q Consensus 124 ~------~~-~~i~~i~~--~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~ 192 (239)
. .. ..+..+++ +|. ++ ++++...+|.+..|++....-... ..+.++++.. .+.+.
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~-------------~~~lVR~f~l-gsq~E 183 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI-------------SGKKVRAFKM-NSQTE 183 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE-------------EEEEEEEEEC-SSCEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc-------------cceEEEEecC-CCCcc
Confidence 1 11 45667887 664 43 677888889999988850000000 1344555554 34677
Q ss_pred EEEEccCCCeEEEEcCCceEEEEEcc-----CCeeeEEecCC---CCeeeeEe
Q psy11036 193 SLCLASGGKRLISASLDHHAKIYEMV-----NFSPVHTLDYP---SPVLSIDV 237 (239)
Q Consensus 193 ~~~~s~~~~~l~s~s~d~~i~iwd~~-----~~~~~~~~~~~---~~v~~~~~ 237 (239)
.+...+....|+.+-+|.-|..++.+ +++.+..+... ..+..|++
T Consensus 184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai 236 (355)
T 3amr_A 184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTI 236 (355)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEE
T ss_pred eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEE
Confidence 88888888888888888666666654 35566655422 34555554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0037 Score=47.25 Aligned_cols=110 Identities=14% Similarity=0.163 Sum_probs=77.2
Q ss_pred CeEEEEE---ecCCCCEEEEee-------------CCCeEEEEeCC---CCCceeeec--------------CCCCEEEE
Q psy11036 44 YVRAGTV---SPVSSDIVISGS-------------YDKTVNVYDTR---SPDPVMSVN--------------HGSPVESV 90 (239)
Q Consensus 44 ~v~~~~~---~~~~~~~l~s~~-------------~dg~v~vw~~~---~~~~~~~~~--------------~~~~v~~~ 90 (239)
.+..+.| .| .+.++++.. .+..|..+|+. +++.+.... .......+
T Consensus 64 ~~sGl~~~~~D~-~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDv 142 (334)
T 2p9w_A 64 QMSGLSLLTHDN-SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQS 142 (334)
T ss_dssp EEEEEEESSSSS-CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEE
T ss_pred eeeEEEEeccCC-CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCcee
Confidence 3578999 58 566766533 15779999999 777665442 11248899
Q ss_pred EEecCCcEEEEeC-C-CcEEEEEccCCCeEEEEEec------cCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 91 LCLPSGGIFVTGG-G-LDVCIWDMLGGGKLLHKFTC------HHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 91 ~~~~~~~~l~~~~-~-~~i~~~d~~~~~~~~~~~~~------~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
+..++|+..++++ . +.|...+.. ++.+..+.. .....+.|+++|+|+.|++...++.+.-+|++
T Consensus 143 avD~~GnaYVt~s~~~~~I~rV~pd--G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 143 AQDRDGNSYVAFALGMPAIARVSAD--GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EECTTSCEEEEEEESSCEEEEECTT--SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EECCCCCEEEeCCCCCCeEEEEeCC--CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 9999999988877 5 666666654 333332211 11236799999999988888779999999977
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.014 Score=49.80 Aligned_cols=156 Identities=17% Similarity=0.221 Sum_probs=97.1
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec---CCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN---HGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~ 119 (239)
..|.++...+ ++.+ ..|+.++-+..++..+++...... ....|.++...+++.+.+... +.+..+|.. .++..
T Consensus 407 ~~v~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~-~~~~~ 482 (781)
T 3v9f_A 407 NSVLCSLKDS-EGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLA-SKKVI 482 (781)
T ss_dssp SBEEEEEECT-TSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESS-SSSCC
T ss_pred cceEEEEECC-CCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCC-CCeEE
Confidence 6788998876 4554 446766778899987664332211 346789999888888776665 668889986 33322
Q ss_pred EEEecc-----CCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEE
Q psy11036 120 HKFTCH-----HKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSL 194 (239)
Q Consensus 120 ~~~~~~-----~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~ 194 (239)
...... ...|.++...++|+..+ |+.++-+..+|.+...+..+ .... ......|.++
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~---------~~~~--------~l~~~~i~~i 544 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKF---------NQYE--------GFCSNTINQI 544 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEE---------CTTT--------TCSCSCEEEE
T ss_pred ecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEc---------cCCC--------CCCCCeeEEE
Confidence 222211 35789998888887554 44433466677652222222 0000 0123568888
Q ss_pred EEccCCCeEEEEcCCceEEEEEccCCe
Q psy11036 195 CLASGGKRLISASLDHHAKIYEMVNFS 221 (239)
Q Consensus 195 ~~s~~~~~l~s~s~d~~i~iwd~~~~~ 221 (239)
...++|.+.++.. +|.|..||..+++
T Consensus 545 ~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 545 YRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp EECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred EECCCCCEEEEEC-CCceEEECCCCCc
Confidence 8888888766554 6765888877654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0036 Score=56.11 Aligned_cols=178 Identities=12% Similarity=0.142 Sum_probs=115.2
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEecc-
Q psy11036 47 AGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCH- 125 (239)
Q Consensus 47 ~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~- 125 (239)
+.-.+| ..+.++.-. ..++.|+|+++.+.+..+....+|.--.|- +.+.++..++..|..|++.....+.+.+..|
T Consensus 70 sAIMnP-~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWi-s~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 70 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNTVALVTDNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hhccCC-CcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEec-CCCeeEEEcCCeEEEeccCCCCccHHHHhcch
Confidence 455677 566666543 689999999998888877767777766775 3557777788899999997544555555444
Q ss_pred ---CCceEEEEEcCCCCEEEEEe-------cCCeEEEEEcccceEeee----------------------------ecce
Q psy11036 126 ---HKTVTSLCLASGGKRLISAS-------LDHHAKIYEMTLKTVSSF----------------------------TGGL 167 (239)
Q Consensus 126 ---~~~i~~i~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~----------------------------~~~~ 167 (239)
...|..-..+++.++++..| ..|.+.+|..+.+..+.+ ..++
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~ 226 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 226 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCc
Confidence 45677778888999877655 348888998862221111 1123
Q ss_pred eEEEEEccCC--CEE------EEEEec---ccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 168 DVCIWDMLGG--GKL------LHKFTC---HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 168 ~i~~~d~~~~--~~~------~~~~~~---h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.+.+.++... +.+ +..+-. ...-..++..++....+..-+.-|.|.+||+.|+.++..-.
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred eEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 4556655332 100 000101 11223456677766777778889999999999998765433
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0016 Score=54.53 Aligned_cols=68 Identities=18% Similarity=0.310 Sum_probs=46.3
Q ss_pred eEEEEEecCCCCEEEEeeC-CCeEEEEeCCCCCceee--ecCCCCEEEEEEecCCcEEEEeC--C-----CcEEEEEcc
Q psy11036 45 VRAGTVSPVSSDIVISGSY-DKTVNVYDTRSPDPVMS--VNHGSPVESVLCLPSGGIFVTGG--G-----LDVCIWDML 113 (239)
Q Consensus 45 v~~~~~~~~~~~~l~s~~~-dg~v~vw~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~--~-----~~i~~~d~~ 113 (239)
..++++.. ++.+++.|+. +..+.+||..+.+.... +.....-.+++..+++++++.|+ + ..+.+||..
T Consensus 245 ~~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 245 CPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred cccccCCC-CCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 33567777 7889999884 46899999887654332 22222223455667899998887 2 468999987
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.02 Score=45.95 Aligned_cols=177 Identities=13% Similarity=0.095 Sum_probs=96.2
Q ss_pred eEEEEEecCCCCEEEEeeCCCeEEEEeCC-------CCCc--------------eeeecCCCCEEEEEEecCCcEEEEeC
Q psy11036 45 VRAGTVSPVSSDIVISGSYDKTVNVYDTR-------SPDP--------------VMSVNHGSPVESVLCLPSGGIFVTGG 103 (239)
Q Consensus 45 v~~~~~~~~~~~~l~s~~~dg~v~vw~~~-------~~~~--------------~~~~~~~~~v~~~~~~~~~~~l~~~~ 103 (239)
...++++|.++.++++-..++.|..+|+. ++.. +...........++|+|++..|+.+.
T Consensus 249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD 328 (496)
T 3kya_A 249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV 328 (496)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence 34778888667777777788899999987 5543 11223345568999999999666554
Q ss_pred --CCcEEEEEccCCCeEE---EEEecc---C------------CceE-EEEEc-------CCCCEEEEEecCCeEEEEEc
Q psy11036 104 --GLDVCIWDMLGGGKLL---HKFTCH---H------------KTVT-SLCLA-------SGGKRLISASLDHHAKIYEM 155 (239)
Q Consensus 104 --~~~i~~~d~~~~~~~~---~~~~~~---~------------~~i~-~i~~~-------~~~~~l~~~~~d~~i~i~d~ 155 (239)
.+.|+.++.......+ ..+-+. . .... .++.. +++.++++=.....|+.++.
T Consensus 329 ~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 329 INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 5788887665222111 222221 0 1123 33443 34444555445566666664
Q ss_pred ccceEeeeecceeE------EEEEccCCCEEEEEEecccCcEEEEEEccC-CCeEEEEcCCceEEEEEccCCeeeEE
Q psy11036 156 TLKTVSSFTGGLDV------CIWDMLGGGKLLHKFTCHHKTVTSLCLASG-GKRLISASLDHHAKIYEMVNFSPVHT 225 (239)
Q Consensus 156 ~~~~~~~~~~~~~i------~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~~~~~ 225 (239)
.+ .+.++.|.+.. ..|-.. .+.+. ....-.....|++.++ |.++++=+..+.||.++++.......
T Consensus 409 ~G-~v~TiaG~g~~~~~~~~~~~G~~-dG~~~--~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 409 EG-IVSTYAGRGASTSLADGNQWGTD-DGDLR--EVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp TC-BEEEEEESCTTHHHHHSCSCCCC-CEETT--TTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred CC-CEEEEecccccccccCccccccC-CCCch--hhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 33 23333221100 000000 00000 0011234678999996 77777777889999999876555443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.038 Score=47.16 Aligned_cols=156 Identities=12% Similarity=0.027 Sum_probs=96.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee----------cCCCCEEEEEEecCCcEEEEeCCCcEEEEEc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV----------NHGSPVESVLCLPSGGIFVTGGGLDVCIWDM 112 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~ 112 (239)
..|.++...+ ++. |..|+.++-|..++..+....... -....|.++...+++.+.+...++.|..|+.
T Consensus 313 ~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~ 390 (781)
T 3v9f_A 313 ASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFEN 390 (781)
T ss_dssp SCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEET
T ss_pred CeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEEC
Confidence 6799998887 454 556776777888887765432211 0235689999988888777665667888887
Q ss_pred cCCCeEEEEE----eccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEeccc
Q psy11036 113 LGGGKLLHKF----TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH 188 (239)
Q Consensus 113 ~~~~~~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~ 188 (239)
. .+. ...+ ......|.++...+++... .|+.++-+..++.+...+..+. . . ....
T Consensus 391 ~-~~~-~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~-----------~-~------~~~~ 449 (781)
T 3v9f_A 391 G-KRV-AIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQIIE-----------L-E------KNEL 449 (781)
T ss_dssp T-EEE-EECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEEECC-----------S-T------TTCC
T ss_pred C-CCe-EEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEEEec-----------c-C------CCCC
Confidence 5 222 2211 1234578888887777644 4666666777776522111110 0 0 1124
Q ss_pred CcEEEEEEccCCCeEEEEcCCceEEEEEccCCeee
Q psy11036 189 KTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPV 223 (239)
Q Consensus 189 ~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~ 223 (239)
..|.++...++|.+.+.. . +-|..||..+++..
T Consensus 450 ~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVI 482 (781)
T ss_dssp CCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCC
T ss_pred CeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEE
Confidence 568888888888766544 3 45888888776543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0065 Score=47.49 Aligned_cols=121 Identities=9% Similarity=0.140 Sum_probs=82.0
Q ss_pred EEecCCcEEEEeCCCcEEEEEccCCCeEEEEEecc----CCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEee---
Q psy11036 91 LCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCH----HKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSS--- 162 (239)
Q Consensus 91 ~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~--- 162 (239)
....+|..++.+.++.|+.-++. .....+.++.. -..|..+..+|+|++||..+ +..|.|..+. +.....
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~-~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVL-TDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETT-TCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred EEEcCCCEEEEEECCEEEEEECC-CCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence 34557888888888899988886 33345555432 23688899999999999885 5578888887 321111
Q ss_pred eecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC---CCeEEEEcCCceEEEEEccC
Q psy11036 163 FTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG---GKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 163 ~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~s~d~~i~iwd~~~ 219 (239)
..+...++.|.+.... .....+|..+.|+|- +..|++-..|+.|++||+..
T Consensus 105 ~~~~~q~~ty~l~~~~------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEE------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHTTEEEEEEGGGCC--------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cccccceeEEEcCCcc------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 0122334555553210 113578999999994 56788899999999999975
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.45 E-value=0.057 Score=48.21 Aligned_cols=177 Identities=9% Similarity=0.093 Sum_probs=106.2
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEec---CCCCEEEEee----------CCCeEEEEeCCC
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSP---VSSDIVISGS----------YDKTVNVYDTRS 74 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~~----------~dg~v~vw~~~~ 74 (239)
+.|++.|..+.+.+..+.-... ..+.+++... +...+++.|. ..|.|.+|++..
T Consensus 807 s~i~lidp~t~~~i~~~~l~~n-------------E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~ 873 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQN-------------EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD 873 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTT-------------EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET
T ss_pred EEEEEEeCCCCeEEEEEeCCCC-------------cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC
Confidence 5688888888877766654331 4455655432 2346888775 347899999874
Q ss_pred CCcee--eecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy11036 75 PDPVM--SVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 152 (239)
Q Consensus 75 ~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 152 (239)
++... ....++++++++-- +| +++++-...+++|++............+ ..|..+.....+++++.|..-..|.+
T Consensus 874 ~kL~lv~~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~ 950 (1158)
T 3ei3_A 874 GKLQTVAEKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELRTECNHY-NNIMALYLKTKGDFILVGDLMRSVLL 950 (1158)
T ss_dssp TEEEEEEEEEESSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEEEEEEEC-CCSCEEEEEEETTEEEEEESSBCEEE
T ss_pred CEEEEEEEEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEEEEeecc-ccEEEEEEeccCCEEEEEEhhheEEE
Confidence 43222 22467889988755 35 6666667889999997333222122212 12333333335678888877777766
Q ss_pred EEcccceEeeeecceeEEEEEccCCCEEEEEE-ecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 153 YEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKF-TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 153 ~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
...+ .. ..+..... ..+...++++.+-.+ ..++.+..+|.+.+.....
T Consensus 951 ~~y~-----------------~~-~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 951 LAYK-----------------PM-EGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEE-----------------TT-TTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred EEEE-----------------cC-CCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence 5544 11 12222111 234566888887654 4677788899999987643
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.006 Score=43.26 Aligned_cols=103 Identities=7% Similarity=-0.031 Sum_probs=66.2
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCC--------EEEEEEecCCcEEEEeCCCcEEEEEccC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSP--------VESVLCLPSGGIFVTGGGLDVCIWDMLG 114 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~~~i~~~d~~~ 114 (239)
..++.++|+| ++.+.++ .+|.+.-.+..+.+...-+..... -.++.|.|+|.+.++ +||.|.-++...
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence 4677999999 7887776 678777777655333222221222 378899999988888 778887776532
Q ss_pred CCeE------EEEEeccCCceEEEEEcCCCCEEEEEecCCeEE
Q psy11036 115 GGKL------LHKFTCHHKTVTSLCLASGGKRLISASLDHHAK 151 (239)
Q Consensus 115 ~~~~------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 151 (239)
+... ...-...=..+..+.+.|+|.+.++. |+.++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 1110 11111112467999999999877776 77743
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.021 Score=43.86 Aligned_cols=109 Identities=8% Similarity=0.046 Sum_probs=61.0
Q ss_pred CCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEe---ccCCceEEEEEcCC---CCEEEEEec-C-----CeEE
Q psy11036 84 GSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFT---CHHKTVTSLCLASG---GKRLISASL-D-----HHAK 151 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~i~~i~~~~~---~~~l~~~~~-d-----~~i~ 151 (239)
-.....++|.|+|+++++-..+.|.+++ ....+.+..+. ........|+++|+ +..|..+.. . +.|.
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 3456799999999977776689999888 31222222221 12346789999998 444444433 2 4566
Q ss_pred EEEcccceEeeeecceeEEEEEccCCCEEEEEEe---cccCcEEEEEEccCCCeEEEEc
Q psy11036 152 IYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFT---CHHKTVTSLCLASGGKRLISAS 207 (239)
Q Consensus 152 i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s 207 (239)
.++.....+... ...+..+. ........++|.|||.+.++.+
T Consensus 109 r~~~~~~~~~~~--------------~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 109 RLRHLGERGVLD--------------RVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEECSSCEEEE--------------EEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEeCCCCcCce--------------EEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 665542111000 01111122 1112235889999998777653
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.055 Score=41.53 Aligned_cols=108 Identities=13% Similarity=0.080 Sum_probs=60.9
Q ss_pred CCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCe-EEEEEe---ccCCceEEEEEcCC---CCEEEEEec----C----C
Q psy11036 84 GSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGK-LLHKFT---CHHKTVTSLCLASG---GKRLISASL----D----H 148 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~-~~~~~~---~~~~~i~~i~~~~~---~~~l~~~~~----d----~ 148 (239)
-.....++|.|+|+++++-.++.|.+++. .++ .+..+. ........|+++|+ +..|..+.. + +
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~--~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP--SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS--SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC--CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999999777766899998874 343 222221 12346789999997 444444332 2 4
Q ss_pred eEEEEEcccc--eEeeeecceeEEEEEccCCCEEEEEEe-cccCcEEEEEEccCCCeEEEEc
Q psy11036 149 HAKIYEMTLK--TVSSFTGGLDVCIWDMLGGGKLLHKFT-CHHKTVTSLCLASGGKRLISAS 207 (239)
Q Consensus 149 ~i~i~d~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s 207 (239)
.|..++.... .+... ...+..+. ...+....|+|.|||.++++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~--------------~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEV--------------KTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEE--------------EEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEEECCCCcCcCcc--------------EEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 5555555411 00000 00111121 1112345789999998777654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.048 Score=40.64 Aligned_cols=153 Identities=15% Similarity=0.106 Sum_probs=72.8
Q ss_pred CCCEEEEeeCC------CeEEEEeCCCCCceeee--cCCCCEEEEEEecCCcEEEEeC----------CCcEEEEEccCC
Q psy11036 54 SSDIVISGSYD------KTVNVYDTRSPDPVMSV--NHGSPVESVLCLPSGGIFVTGG----------GLDVCIWDMLGG 115 (239)
Q Consensus 54 ~~~~l~s~~~d------g~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~----------~~~i~~~d~~~~ 115 (239)
++.+++.|+.+ ..+.+||..+.+....- .....-.+++. -++++++.|+ ...+.+||+. .
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~-~ 178 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPA-T 178 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETT-T
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCC-C
Confidence 56777888765 46889998877543321 11111112222 2667777776 1337889986 3
Q ss_pred CeEEEEEeccC---CceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCE-EEEEEecccCcE
Q psy11036 116 GKLLHKFTCHH---KTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGK-LLHKFTCHHKTV 191 (239)
Q Consensus 116 ~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~h~~~v 191 (239)
.+ ...+.... ..-..+.+ +++.++.|+.++.-. ..++.+||+.+..- .+..+.......
T Consensus 179 ~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~--------------~~~~~~yd~~~~~W~~~~~~p~~r~~~ 241 (306)
T 3ii7_A 179 ET-WTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGG--------------LDNVEYYDIKLNEWKMVSPMPWKGVTV 241 (306)
T ss_dssp TE-EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEE--------------BCCEEEEETTTTEEEECCCCSCCBSCC
T ss_pred Ce-EEECCCccchhhcceEEEE--CCEEEEEeCCCCCCC--------------CceEEEeeCCCCcEEECCCCCCCccce
Confidence 32 23332111 11122222 556666666543200 01233444333211 111111111112
Q ss_pred EEEEEccCCCeEEEEcCC-----ceEEEEEccCC--eeeEEec
Q psy11036 192 TSLCLASGGKRLISASLD-----HHAKIYEMVNF--SPVHTLD 227 (239)
Q Consensus 192 ~~~~~s~~~~~l~s~s~d-----~~i~iwd~~~~--~~~~~~~ 227 (239)
..+.+ ++++++.|+.+ ..+.+||..+. +.+..+.
T Consensus 242 ~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 282 (306)
T 3ii7_A 242 KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVR 282 (306)
T ss_dssp EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEE
T ss_pred eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcc
Confidence 22233 67777878744 46899999774 3444444
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.096 Score=39.63 Aligned_cols=147 Identities=8% Similarity=-0.035 Sum_probs=78.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-----CCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCe
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-----HGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGK 117 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~ 117 (239)
..+.++.+.+ .+..+++ +.+|.| +.....++.-.... ....+.++.+.+ +..++++..+.|. .....++
T Consensus 36 ~~~~~v~~~~-~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~--~S~DgG~ 109 (327)
T 2xbg_A 36 ATILDMSFID-RHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIML--HTTDGGQ 109 (327)
T ss_dssp SCEEEEEESS-SSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEE--EESSTTS
T ss_pred CcEEEEEECC-CCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEE--EECCCCC
Confidence 6799999976 5666664 566765 33444444322221 234688999986 5555555456443 3332344
Q ss_pred EEEEEe---ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEE
Q psy11036 118 LLHKFT---CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSL 194 (239)
Q Consensus 118 ~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~ 194 (239)
.-.... .+...+..+.+.+++..++++ .++.|.. .. .....-......+...+..+
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~--S~------------------DgG~tW~~~~~~~~~~~~~~ 168 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR--TK------------------DSGKNWQALVQEAIGVMRNL 168 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE--ES------------------STTSSEEEEECSCCCCEEEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE--Ec------------------CCCCCCEEeecCCCcceEEE
Confidence 333322 123456777777666655554 4554321 11 00111111122345568889
Q ss_pred EEccCCCeEEEEcCCceEEEEE
Q psy11036 195 CLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 195 ~~s~~~~~l~s~s~d~~i~iwd 216 (239)
.+.|++.+++.+...+..+-.|
T Consensus 169 ~~~~~~~~~~~g~~G~~~~S~d 190 (327)
T 2xbg_A 169 NRSPSGEYVAVSSRGSFYSTWE 190 (327)
T ss_dssp EECTTSCEEEEETTSSEEEEEC
T ss_pred EEcCCCcEEEEECCCcEEEEeC
Confidence 9999988887775444444444
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.097 Score=38.84 Aligned_cols=162 Identities=15% Similarity=0.140 Sum_probs=82.9
Q ss_pred CCCEEEEeeCC-----CeEEEEeCCCCC---ceeee--cCCCCEEEEEEecCCcEEEEeC-C-----CcEEEEEccCCCe
Q psy11036 54 SSDIVISGSYD-----KTVNVYDTRSPD---PVMSV--NHGSPVESVLCLPSGGIFVTGG-G-----LDVCIWDMLGGGK 117 (239)
Q Consensus 54 ~~~~l~s~~~d-----g~v~vw~~~~~~---~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~-----~~i~~~d~~~~~~ 117 (239)
++.+++.|+.+ ..+.+||..+.+ ....- .....-.+++. .++..++.|+ + ..+.+||+. ..+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~-~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPN-IDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETT-TTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCC-CCe
Confidence 56778888765 468899998776 33221 11111112222 2577777776 2 358889986 333
Q ss_pred EE--EEEeccCCceEEEEEcCCCCEEEEEecC-----CeEEEEEcccceEeee---------------------ec----
Q psy11036 118 LL--HKFTCHHKTVTSLCLASGGKRLISASLD-----HHAKIYEMTLKTVSSF---------------------TG---- 165 (239)
Q Consensus 118 ~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~---------------------~~---- 165 (239)
-. ..+......-..+.+ +++.++.|+.+ ..+.+||+....-..+ .|
T Consensus 140 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 217 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG 217 (301)
T ss_dssp EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCC
Confidence 22 222211112222222 66777777765 4578888752211111 11
Q ss_pred ---ceeEEEEEccCCCEE-EEEEecccCcEEEEEEccCCCeEEEEcCC-----ceEEEEEccCCe
Q psy11036 166 ---GLDVCIWDMLGGGKL-LHKFTCHHKTVTSLCLASGGKRLISASLD-----HHAKIYEMVNFS 221 (239)
Q Consensus 166 ---~~~i~~~d~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~i~iwd~~~~~ 221 (239)
..++.+||+.+..-. +..+.........+. -++++++.|+.+ ..+.+||+++.+
T Consensus 218 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 234788888764221 111111111112222 267777777654 468889987653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.12 Score=39.51 Aligned_cols=98 Identities=10% Similarity=0.121 Sum_probs=60.2
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc--eeee----cCCCCEEEEEEecC---CcEEEEeC--C-----Cc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP--VMSV----NHGSPVESVLCLPS---GGIFVTGG--G-----LD 106 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~--~~~~----~~~~~v~~~~~~~~---~~~l~~~~--~-----~~ 106 (239)
.....++|.| +++++++ ..+|.|++++ +++. +..+ ........++++|+ +..++++. . +.
T Consensus 31 ~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 5577999999 6776555 5669999998 3332 1111 12457899999998 55555444 2 56
Q ss_pred EEEEEccCCCe------EEEEEec---cCCceEEEEEcCCCCEEEEEe
Q psy11036 107 VCIWDMLGGGK------LLHKFTC---HHKTVTSLCLASGGKRLISAS 145 (239)
Q Consensus 107 i~~~d~~~~~~------~~~~~~~---~~~~i~~i~~~~~~~~l~~~~ 145 (239)
|..++.. ... .+..+.. .......++|.|+|.+.++.+
T Consensus 107 v~r~~~~-~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHL-GERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEEC-SSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEeC-CCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 7778775 221 1122331 112336899999997666644
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.12 Score=39.10 Aligned_cols=146 Identities=8% Similarity=-0.008 Sum_probs=83.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec----CCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN----HGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~ 118 (239)
..+.++.+.+ +..++ ++.++.|.. ....++.-.... .+..+..+.+.+++..++++.++.| |.....++.
T Consensus 80 ~~~~~i~~~~--~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~t 153 (327)
T 2xbg_A 80 YRFNSVSFQG--NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKN 153 (327)
T ss_dssp CEEEEEEEET--TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSS
T ss_pred ccEEEEEecC--CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCC
Confidence 4688999976 34444 455665543 333344333331 3356788888888887777766654 333323433
Q ss_pred EEEE-eccCCceEEEEEcCCCCEEEEEecCCeEE-EEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEE
Q psy11036 119 LHKF-TCHHKTVTSLCLASGGKRLISASLDHHAK-IYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL 196 (239)
Q Consensus 119 ~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~ 196 (239)
-... ......+..+.+.+++.+++.+. ++.+. -.|-.+. .-+.+ -......+..+.+
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~------------------tW~~~--~~~~~~~~~~~~~ 212 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQT------------------AWEPH--NRTTSRRLHNMGF 212 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCS------------------SCEEE--ECCSSSCEEEEEE
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCC------------------ceeEC--CCCCCCccceeEE
Confidence 3332 34456788999999888776664 44433 2221100 11111 1233456888889
Q ss_pred ccCCCeEEEEcCCceEEEEE
Q psy11036 197 ASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 197 s~~~~~l~s~s~d~~i~iwd 216 (239)
.+++++++.+ .+|.+++.+
T Consensus 213 ~~~g~~~~~~-~~G~~~~s~ 231 (327)
T 2xbg_A 213 TPDGRLWMIV-NGGKIAFSD 231 (327)
T ss_dssp CTTSCEEEEE-TTTEEEEEE
T ss_pred CCCCCEEEEe-CCceEEEec
Confidence 9988766544 578777764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.12 Score=38.41 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=49.5
Q ss_pred CCCEEEEeeCCC-----eEEEEeCCCCCceeee--cCCCCEEEEEEecCCcEEEEeC-C-------CcEEEEEccCCCeE
Q psy11036 54 SSDIVISGSYDK-----TVNVYDTRSPDPVMSV--NHGSPVESVLCLPSGGIFVTGG-G-------LDVCIWDMLGGGKL 118 (239)
Q Consensus 54 ~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~-------~~i~~~d~~~~~~~ 118 (239)
++.+++.|+.++ .+.+||+.+.+....- .....-.+++. -+++.++.|+ + ..+.+||+. ..+
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~-~~~- 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNAT-TNE- 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETT-TTE-
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCC-CCc-
Confidence 567777787653 5778898776543321 21111112222 2567777766 2 347889986 332
Q ss_pred EEEEec---cCCceEEEEEcCCCCEEEEEecCC-----eEEEEEcc
Q psy11036 119 LHKFTC---HHKTVTSLCLASGGKRLISASLDH-----HAKIYEMT 156 (239)
Q Consensus 119 ~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~-----~i~i~d~~ 156 (239)
...+.. .......+.+ +++.++.|+.++ .+.+||+.
T Consensus 185 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 228 (302)
T 2xn4_A 185 WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPT 228 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETT
T ss_pred EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCC
Confidence 222221 1111122222 566777776543 34455544
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.043 Score=41.77 Aligned_cols=197 Identities=9% Similarity=0.012 Sum_probs=101.9
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEE--ecCCCCEEEEe-eCCCeEEEEeCCCCCceeee
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTV--SPVSSDIVISG-SYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~-~~dg~v~vw~~~~~~~~~~~ 81 (239)
..||.|+-.|.++|+....++.... .++....- .+.++..++.. +.||.|..++..+|.....+
T Consensus 17 t~dG~l~Ald~~tG~~~W~~~~~~~-------------~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 17 DVEGGLHAVDRRNGHIIWSIEPENF-------------QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp ETTSCEEEEETTTTEEEEEECGGGS-------------CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred eCCCeEEEEECCCCcEEEEecCCcc-------------CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 3589999999999999988876410 11111100 01123444443 68999999998887544433
Q ss_pred c-----CCCCEEE---EEE-e----cCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCC--c-----eEEEEEc-----
Q psy11036 82 N-----HGSPVES---VLC-L----PSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHK--T-----VTSLCLA----- 135 (239)
Q Consensus 82 ~-----~~~~v~~---~~~-~----~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~--~-----i~~i~~~----- 135 (239)
. ...++.. ... . ..+..+++++ ++.+.-.|++ +++.+.++..... . ..|....
T Consensus 84 ~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~-tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d 162 (339)
T 2be1_A 84 SIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML-NGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQ 162 (339)
T ss_dssp EHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETT-TCCEEEEESTTCBCC------------------
T ss_pred ccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECC-CCcEEEEEecCCCcccccccccccccccccccc
Confidence 2 2223321 000 0 0344566666 7999999998 8888887763211 0 0111111
Q ss_pred CCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCc--E-EEEEEccCCCeEEEEcCCceE
Q psy11036 136 SGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKT--V-TSLCLASGGKRLISASLDHHA 212 (239)
Q Consensus 136 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~--v-~~~~~s~~~~~l~s~s~d~~i 212 (239)
..+..++.+..+..+.+.+-.+ . +|+.. .......... + ..-..+.|+.++ .++.||.|
T Consensus 163 ~~~~~v~ig~~~y~v~~~~~sG----------~--~W~~~-----~s~~~~~~~~~~~~~~~~~s~Dg~~~-~~~~dg~v 224 (339)
T 2be1_A 163 ECENMIVIGKTIFELGIHSYDG----------A--SYNVT-----YSTWQQNVLDVPLALQNTFSKDGMCI-APFRDKSL 224 (339)
T ss_dssp --CCEEEEEEEEEECEECCTTS----------C--CCCCE-----EEEEECCTTTHHHHTTCSSCSSSCCE-EEETTTEE
T ss_pred cCCCeEEEecceEEEEEECCCC----------C--eEEEe-----cccccccccccccccccccccCCcEE-EECCCCEE
Confidence 1124555555555554443111 0 22211 1111111100 0 000112346664 47789999
Q ss_pred EEEEccCCeeeE-EecCCCCee
Q psy11036 213 KIYEMVNFSPVH-TLDYPSPVL 233 (239)
Q Consensus 213 ~iwd~~~~~~~~-~~~~~~~v~ 233 (239)
.-+|..+|+.+. +.+..+++.
T Consensus 225 ~A~d~~~G~~~W~~~~l~sPv~ 246 (339)
T 2be1_A 225 LASDLDFRIARWVSPTFPGIIV 246 (339)
T ss_dssp EEECSTTCCEEEECCCCSSCEE
T ss_pred EEEECCCCcEEEEeecCCCCeE
Confidence 999999999887 555666654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.018 Score=40.85 Aligned_cols=140 Identities=6% Similarity=-0.062 Sum_probs=77.2
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCC------ceeeecC--CCCEEEEEEecCCcEEEEeCCCcEEEEEccCCC-----eEEE
Q psy11036 54 SSDIVISGSYDKTVNVYDTRSPD------PVMSVNH--GSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGG-----KLLH 120 (239)
Q Consensus 54 ~~~~l~s~~~dg~v~vw~~~~~~------~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~-----~~~~ 120 (239)
.+.+|.....| +++.=....+. ...++.. =..+..++|+|+|.+.++ .+|.+.-.+..... ..-.
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCccccccccc
Confidence 34566666777 77666655554 2233333 246789999999987777 76765554443100 1111
Q ss_pred EEe--ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc
Q psy11036 121 KFT--CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS 198 (239)
Q Consensus 121 ~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~ 198 (239)
.+- +-. .-..+.|.|+|.+.++ .||.|+-++-....-....+ ....+ -..-=..+..|.|.|
T Consensus 81 ~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~-----------~a~~v--g~~gw~~~~~lff~p 144 (236)
T 1tl2_A 81 KIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIA-----------RATEV--GSGGWSGFKFLFFHP 144 (236)
T ss_dssp EEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHH-----------HSEEE--ECSSGGGEEEEEECT
T ss_pred Eecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceec-----------cccEe--ccCCCCceEEEEECC
Confidence 111 111 2478899999987777 56888766543000000000 00111 011114578899999
Q ss_pred CCCeEEEEcCCceEE
Q psy11036 199 GGKRLISASLDHHAK 213 (239)
Q Consensus 199 ~~~~l~s~s~d~~i~ 213 (239)
+|.+.+.. |+.++
T Consensus 145 ~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 145 NGYLYAVH--GQQFY 157 (236)
T ss_dssp TSCEEEEE--TTEEE
T ss_pred CceEEEEe--CCcEE
Confidence 99877766 66654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.15 Score=38.98 Aligned_cols=103 Identities=7% Similarity=-0.003 Sum_probs=63.4
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce--eee-----cCCCCEEEEEEecC---CcEEEEe----CCCcEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV--MSV-----NHGSPVESVLCLPS---GGIFVTG----GGLDVC 108 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~--~~~-----~~~~~v~~~~~~~~---~~~l~~~----~~~~i~ 108 (239)
.....++|.| ++.++++--..|.|++++..+++.. ..+ ........|+++|+ +..|++. .++.|.
T Consensus 32 ~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 32 NSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 6678999999 7887777655899999987655532 112 23567899999995 3344432 245566
Q ss_pred EEEccCC---------CeEE-EEEec-cCCceEEEEEcCCCCEEEEEec
Q psy11036 109 IWDMLGG---------GKLL-HKFTC-HHKTVTSLCLASGGKRLISASL 146 (239)
Q Consensus 109 ~~d~~~~---------~~~~-~~~~~-~~~~i~~i~~~~~~~~l~~~~~ 146 (239)
-|.+... .+.+ ..+.. ....-..|.|.|||.+.++.+.
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence 6665421 1112 22321 1123457999999987777554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.16 Score=38.95 Aligned_cols=165 Identities=13% Similarity=0.086 Sum_probs=89.1
Q ss_pred CeEEEEEecCCCCEEEEe------------eCCCeEEEEeCCCCC-ceeee---c-----CCCCEEEEEEec--CCc-EE
Q psy11036 44 YVRAGTVSPVSSDIVISG------------SYDKTVNVYDTRSPD-PVMSV---N-----HGSPVESVLCLP--SGG-IF 99 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~------------~~dg~v~vw~~~~~~-~~~~~---~-----~~~~v~~~~~~~--~~~-~l 99 (239)
....++..| ++..++++ ..+|.|.++|..+.. ....+ + .......+.+.+ ++. +|
T Consensus 51 G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345677777 56555544 168999999987432 12222 1 123677888766 343 44
Q ss_pred EEeC----CCcEEEEEccCCCeEEE---EEecc-CCceEEEEEcCCCCEEEEEec---CCeEEEEEcccceEeeeeccee
Q psy11036 100 VTGG----GLDVCIWDMLGGGKLLH---KFTCH-HKTVTSLCLASGGKRLISASL---DHHAKIYEMTLKTVSSFTGGLD 168 (239)
Q Consensus 100 ~~~~----~~~i~~~d~~~~~~~~~---~~~~~-~~~i~~i~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~ 168 (239)
+++. +..+.+|++...+.... .+.+. -...+.+.+.++|.+.++... |.....++.. .-...+.
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~-----~~~~~g~ 204 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH-----LGLAWSF 204 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHH-----TTCCCEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhh-----ccCCccE
Confidence 4443 36788888764333322 23221 235788999999887766531 1000000000 0001223
Q ss_pred EEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEE-cCCceEEEEEcc
Q psy11036 169 VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA-SLDHHAKIYEMV 218 (239)
Q Consensus 169 i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~d~~i~iwd~~ 218 (239)
+.-+|.. +. ..+...-..-..++|+||++.|..+ +..+.|..|++.
T Consensus 205 vyr~d~~---~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 205 VTYYSPN---DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEEECTT---CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred EEEEECC---eE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 4444432 11 1122223446789999999877655 567899999985
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.14 Score=38.26 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=45.8
Q ss_pred CCCEEEEeeCC--------CeEEEEeCCCCCceee--ecCCCCEEEEEEecCCcEEEEeCC-------CcEEEEEccCCC
Q psy11036 54 SSDIVISGSYD--------KTVNVYDTRSPDPVMS--VNHGSPVESVLCLPSGGIFVTGGG-------LDVCIWDMLGGG 116 (239)
Q Consensus 54 ~~~~l~s~~~d--------g~v~vw~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-------~~i~~~d~~~~~ 116 (239)
++.+++.|+.+ ..+.+||..+.+.... +.....-.+++. -+++.++.|+. ..+.+||+. +.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~-~~ 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPK-KF 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETT-TT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCC-CC
Confidence 56777777743 4588999887653322 111111112222 35667777662 458899987 33
Q ss_pred eEEEEEec---cCCceEEEEEcCCCCEEEEEecCC
Q psy11036 117 KLLHKFTC---HHKTVTSLCLASGGKRLISASLDH 148 (239)
Q Consensus 117 ~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~ 148 (239)
+ -..+.. ....-..+.+ +++.++.|+.++
T Consensus 176 ~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 207 (315)
T 4asc_A 176 E-WKELAPMQTARSLFGATVH--DGRIIVAAGVTD 207 (315)
T ss_dssp E-EEECCCCSSCCBSCEEEEE--TTEEEEEEEECS
T ss_pred e-EEECCCCCCchhceEEEEE--CCEEEEEeccCC
Confidence 2 222221 1111122222 566777777654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.16 Score=37.78 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=35.0
Q ss_pred CCCEEEEeeCC----CeEEEEeCCCCCceeee--cCC-CCEEEEEEecCCcEEEEeC-C------CcEEEEEcc
Q psy11036 54 SSDIVISGSYD----KTVNVYDTRSPDPVMSV--NHG-SPVESVLCLPSGGIFVTGG-G------LDVCIWDML 113 (239)
Q Consensus 54 ~~~~l~s~~~d----g~v~vw~~~~~~~~~~~--~~~-~~v~~~~~~~~~~~l~~~~-~------~~i~~~d~~ 113 (239)
++.+++.|+.+ ..+.+||..+.+....- ... .....+. -++++++.|+ + ..+.+||+.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTR 126 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCC
Confidence 56788888765 67889998877543322 211 1122222 2567777776 3 458889987
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.27 Score=39.10 Aligned_cols=103 Identities=10% Similarity=-0.003 Sum_probs=61.1
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee--eec-------CCCCEEEEEEecC---CcEEEEeC-C-----
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM--SVN-------HGSPVESVLCLPS---GGIFVTGG-G----- 104 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~--~~~-------~~~~v~~~~~~~~---~~~l~~~~-~----- 104 (239)
.....++|.| +++++++-...+.|++++..+++... .+. ....+..|+++|+ +..|+++. .
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 5677999999 78877765444578888865554322 221 2456789999995 44444433 1
Q ss_pred --------CcEEEEEccCCC------eEE-EEEec-cCCceEEEEEcCCCCEEEEEec
Q psy11036 105 --------LDVCIWDMLGGG------KLL-HKFTC-HHKTVTSLCLASGGKRLISASL 146 (239)
Q Consensus 105 --------~~i~~~d~~~~~------~~~-~~~~~-~~~~i~~i~~~~~~~~l~~~~~ 146 (239)
..|.-+++.... +.+ ..+.. .......|+|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 245555543211 111 11221 1234688999999987776554
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.23 Score=36.99 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=49.7
Q ss_pred CCCEEEEeeCC-----CeEEEEeCCCCCceee--ecCC-CCEEEEEEecCCcEEEEeC-C-----CcEEEEEccCCCeEE
Q psy11036 54 SSDIVISGSYD-----KTVNVYDTRSPDPVMS--VNHG-SPVESVLCLPSGGIFVTGG-G-----LDVCIWDMLGGGKLL 119 (239)
Q Consensus 54 ~~~~l~s~~~d-----g~v~vw~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~-~-----~~i~~~d~~~~~~~~ 119 (239)
++.+++.|+.+ ..+.+||..+.+.... +... ....++.+ ++.+++.|+ + ..+.+||+. ..+ .
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~-~~~-W 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPE-RNE-W 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT-TTE-E
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCC-CCe-E
Confidence 56777777654 3588899887653322 1111 11222222 567777776 2 458889986 332 2
Q ss_pred EEEec---cCCceEEEEEcCCCCEEEEEecC-----CeEEEEEcc
Q psy11036 120 HKFTC---HHKTVTSLCLASGGKRLISASLD-----HHAKIYEMT 156 (239)
Q Consensus 120 ~~~~~---~~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~ 156 (239)
..+.. .......+.+ +++.++.|+.+ ..+.+||+.
T Consensus 197 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 197 RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCC
Confidence 22221 1111222222 56667777654 335555554
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.23 Score=36.97 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=33.7
Q ss_pred CCCEEEEeeC----C-----CeEEEEeCCCCCceee--ecC-CCCEEEEEEecCCcEEEEeC-C-----CcEEEEEcc
Q psy11036 54 SSDIVISGSY----D-----KTVNVYDTRSPDPVMS--VNH-GSPVESVLCLPSGGIFVTGG-G-----LDVCIWDML 113 (239)
Q Consensus 54 ~~~~l~s~~~----d-----g~v~vw~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~l~~~~-~-----~~i~~~d~~ 113 (239)
++.+++.|+. + ..+.+||..+.+.... +.. ......+.+ ++++++.|+ + ..+.+||+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCC
Confidence 5677777776 2 3588899887653322 111 112222222 677777776 2 468889986
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.24 Score=36.73 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=33.4
Q ss_pred CCCEEEEeeCCC-----eEEEEeCCCCCceeee--cCCCCEEEEEEecCCcEEEEeC-C-----CcEEEEEcc
Q psy11036 54 SSDIVISGSYDK-----TVNVYDTRSPDPVMSV--NHGSPVESVLCLPSGGIFVTGG-G-----LDVCIWDML 113 (239)
Q Consensus 54 ~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~-----~~i~~~d~~ 113 (239)
++.+++.|+.++ .+.+||..+.+....- .....-.+++. -++..++.|+ + ..+.+||+.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~ 132 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIK 132 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETT
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCC
Confidence 567888887653 5888998876533221 11111112222 2567777776 3 247788886
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.28 Score=36.70 Aligned_cols=82 Identities=7% Similarity=0.035 Sum_probs=47.7
Q ss_pred CeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC---CC--cEEEEEccCCCeEEEEEeccCCceEEEEEcCCCC
Q psy11036 65 KTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG---GL--DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK 139 (239)
Q Consensus 65 g~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 139 (239)
..|+..++...+....... . +..+++++..|+-.. ++ .|...++. +.....+..+.. .+++++++
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d--Gs~~~~lt~~~~----~~~~~~g~ 157 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRID--GEEKKKIKNHYL----FTCNTSDR 157 (302)
T ss_dssp EEEEEEETTSCCCEEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETT--SCCCEEEESSCC----CCSEEETT
T ss_pred CeEEEEeCCCCcceEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECC--CCCeEEEeCCCc----eEeeEECC
Confidence 4677778776654332222 1 236777888887654 34 45555554 444445554433 45677888
Q ss_pred EEEEEec-CCeEEEEEcc
Q psy11036 140 RLISASL-DHHAKIYEMT 156 (239)
Q Consensus 140 ~l~~~~~-d~~i~i~d~~ 156 (239)
.|.-.+. ...|...++.
T Consensus 158 ~iy~t~~g~~~Iy~~~l~ 175 (302)
T 3s25_A 158 YFYYNNPKNGQLYRYDTA 175 (302)
T ss_dssp EEEEECTTTCCEEEEETT
T ss_pred EEEEEeCCCceEEEEECC
Confidence 8776654 5677777766
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.12 Score=42.10 Aligned_cols=134 Identities=14% Similarity=0.158 Sum_probs=79.6
Q ss_pred cCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCC-----Ce-------EEEEEeccCCceEEEEEcCCCCEEEEEecC
Q psy11036 82 NHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGG-----GK-------LLHKFTCHHKTVTSLCLASGGKRLISASLD 147 (239)
Q Consensus 82 ~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~-----~~-------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 147 (239)
+.......+..+|+|+++++++ +.++.++|.+.- .+ ....... .-.....+|.++|....+.-.|
T Consensus 320 P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfid 398 (638)
T 3sbq_A 320 PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFID 398 (638)
T ss_dssp EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTT
T ss_pred eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeec
Confidence 3444556788999999999998 799999998721 11 1233332 2344678999999666666689
Q ss_pred CeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEE-----EEccCCCeEEEEc---CCce--------
Q psy11036 148 HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSL-----CLASGGKRLISAS---LDHH-------- 211 (239)
Q Consensus 148 ~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~-----~~s~~~~~l~s~s---~d~~-------- 211 (239)
..|.-|++... +..+.|. .....+..+.-|-++-.-. .-.|+|++|++.. .|..
T Consensus 399 SqvvkWni~~a-~~~~~g~---------~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~p 468 (638)
T 3sbq_A 399 SQVVKWNMEEA-VRAYKGE---------KVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHP 468 (638)
T ss_dssp TEEEEEEHHHH-HHHHTTC---------CCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCC
T ss_pred ceEEEEeccHH-HHHhcCc---------cCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCC
Confidence 99999998710 0001010 0123444455554433222 1257888888874 4543
Q ss_pred --EEEEEccC--CeeeEEe
Q psy11036 212 --AKIYEMVN--FSPVHTL 226 (239)
Q Consensus 212 --i~iwd~~~--~~~~~~~ 226 (239)
-.+.|+.. .+++...
T Consensus 469 en~QlidIsGdkM~lv~D~ 487 (638)
T 3sbq_A 469 ENDQLIDISGDEMKLVHDG 487 (638)
T ss_dssp EEEEEEECSSSSCEEEEEE
T ss_pred CcceeEecCCCceEEEecC
Confidence 47777743 3444433
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.27 Score=37.61 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=34.2
Q ss_pred CCEEEEEEecCCc-EEEEeCCCcEEEEEccCCCeEEEE---E----eccCCceEEEEEcCC
Q psy11036 85 SPVESVLCLPSGG-IFVTGGGLDVCIWDMLGGGKLLHK---F----TCHHKTVTSLCLASG 137 (239)
Q Consensus 85 ~~v~~~~~~~~~~-~l~~~~~~~i~~~d~~~~~~~~~~---~----~~~~~~i~~i~~~~~ 137 (239)
.....|+|.|+|+ ++++-..|.|.+++.. +..... + .........|+++|+
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~--g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG--KGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT--TEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC--CceeeEecCCcccccCCCCCceeEEECCC
Confidence 3567999999999 7776668999988853 322111 1 112345689999995
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.37 Score=36.89 Aligned_cols=101 Identities=10% Similarity=-0.019 Sum_probs=59.7
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-ceeee----cCCCCEEEEEEecC---CcEEEEeC-----C----C
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD-PVMSV----NHGSPVESVLCLPS---GGIFVTGG-----G----L 105 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-~~~~~----~~~~~v~~~~~~~~---~~~l~~~~-----~----~ 105 (239)
.....++|.| +++++++ ..+|.|++++ .+++ .+..+ ........++++|+ +..|+++. + +
T Consensus 29 ~~P~~ia~~p-dG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLG-GGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEE-TTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcC-CCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 5678999999 6765554 5669999997 3443 22221 12356889999997 44444432 2 5
Q ss_pred cEEEEEccCC------CeE-EEEEec-cCCceEEEEEcCCCCEEEEEec
Q psy11036 106 DVCIWDMLGG------GKL-LHKFTC-HHKTVTSLCLASGGKRLISASL 146 (239)
Q Consensus 106 ~i~~~d~~~~------~~~-~~~~~~-~~~~i~~i~~~~~~~~l~~~~~ 146 (239)
.|..++.... .+. +..+.. .......++|.|||.+.++.+.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence 6777776522 111 112221 1113467999999987766543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.38 Score=36.81 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=57.1
Q ss_pred CCeEEEEEecCCCC-EEEEeeCCCeEEEEeCCCCCc---eeee-----cCCCCEEEEEEecC---CcEEEEeC-C-----
Q psy11036 43 DYVRAGTVSPVSSD-IVISGSYDKTVNVYDTRSPDP---VMSV-----NHGSPVESVLCLPS---GGIFVTGG-G----- 104 (239)
Q Consensus 43 ~~v~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~~~~---~~~~-----~~~~~v~~~~~~~~---~~~l~~~~-~----- 104 (239)
.....++|.| +++ +++ +...|.|++++.. ++. +..+ ........++++|+ +..++++. .
T Consensus 18 ~~P~~i~~~p-dG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLP-DNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECS-TTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcC-CCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 5578999999 777 555 4567999999853 221 1111 12346789999995 44444442 1
Q ss_pred ---CcEEEEEccCCC-e--EEEE-Eec------cCCceEEEEEcCCCCEEEEEec
Q psy11036 105 ---LDVCIWDMLGGG-K--LLHK-FTC------HHKTVTSLCLASGGKRLISASL 146 (239)
Q Consensus 105 ---~~i~~~d~~~~~-~--~~~~-~~~------~~~~i~~i~~~~~~~~l~~~~~ 146 (239)
..|..+++.... . .... +.. ....-..++|.|||.+.++.+.
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 245556664221 1 1111 111 1112357999999976665443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.48 Score=37.44 Aligned_cols=191 Identities=12% Similarity=0.077 Sum_probs=113.2
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC-CCceeeec----
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS-PDPVMSVN---- 82 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~~---- 82 (239)
..+.|+|+++.+.++.+.-. ..|.-=.|-. .+.|+-.+ +..|+-|++.. ..+++.+.
T Consensus 86 ~~lQiFnle~K~klks~~~~---------------e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~ 147 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHTMT---------------DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSS 147 (494)
T ss_dssp TEEEEEETTTTEEEEEEECS---------------SCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGG
T ss_pred CeEEEEchHHhhhhcceecC---------------CCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheecchh
Confidence 56777777777777666655 3455555554 34444333 35799999974 34555552
Q ss_pred -CCCCEEEEEEecCCcEEEEeC--------CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCC---CEEEEEecC---
Q psy11036 83 -HGSPVESVLCLPSGGIFVTGG--------GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG---KRLISASLD--- 147 (239)
Q Consensus 83 -~~~~v~~~~~~~~~~~l~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~~d--- 147 (239)
....|.....+++.++++..+ .|.+.+|..+ .+..+.+.+|......+.+..+. ..++.+...
T Consensus 148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST--TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc--ccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 245778888899999888665 2678899985 55666777776655444442211 234444332
Q ss_pred CeEEEEEcc-c--------c--------------------------eEeeeecceeEEEEEccCCCEEEEEEecccCcEE
Q psy11036 148 HHAKIYEMT-L--------K--------------------------TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVT 192 (239)
Q Consensus 148 ~~i~i~d~~-~--------~--------------------------~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~ 192 (239)
+.++|.++. . + .+..++..+-+.+||+.+ +.++..-+-....|.
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~i~~nrIs~~~iF 304 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRISGETIF 304 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEE
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccc-ceeeeeecccCCceE
Confidence 677777774 1 0 111225566689999987 455544444455555
Q ss_pred EEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 193 SLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 193 ~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
..+.+....=++.....|.|.--.+..
T Consensus 305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 305 VTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred EecccCCCCcEEEEccCceEEEEEEcc
Confidence 544444433344444666665554443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.56 Score=35.99 Aligned_cols=172 Identities=12% Similarity=0.156 Sum_probs=94.4
Q ss_pred CCCEEEEeeCCCcc-eeeee--eCCceeeccceeeccCCCCCeEEEEEecC-CCC--EEEEeeC--CCeEEEEeCCCCCc
Q psy11036 6 PILIVALWDIPSEA-QVSTF--TNHTTIYKVPLMLYSTPQDYVRAGTVSPV-SSD--IVISGSY--DKTVNVYDTRSPDP 77 (239)
Q Consensus 6 ~dg~i~vwd~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~--~l~s~~~--dg~v~vw~~~~~~~ 77 (239)
.+|.|.++|.++.. ....+ .+.. +....-....+.+.++ ++. ++++-.. +.++.+|++.....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~---------~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~ 151 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNT---------LDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK 151 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSS---------CCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT
T ss_pred CCCeEEEEecCCCCCceEEEEccCCC---------CCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC
Confidence 57999999987321 12222 2210 0001135677777662 232 3444222 56788888765432
Q ss_pred ee----eec--CCCCEEEEEEecCCcEEEEeC----C------------CcEEEEEccCCCeEEEEEeccCCceEEEEEc
Q psy11036 78 VM----SVN--HGSPVESVLCLPSGGIFVTGG----G------------LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 135 (239)
Q Consensus 78 ~~----~~~--~~~~v~~~~~~~~~~~l~~~~----~------------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~ 135 (239)
.. .+. .-...+.+.+.++|.+.++.. + ..=.+|.+. .++ ...+...-...+.++|+
T Consensus 152 ~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d-~~~-~~~~~~~l~~pNGia~s 229 (355)
T 3sre_A 152 SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS-PND-VRVVAEGFDFANGINIS 229 (355)
T ss_dssp EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC-TTC-CEEEEEEESSEEEEEEC
T ss_pred EEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE-CCe-EEEeecCCcccCcceEC
Confidence 22 222 234678999999998877654 1 122344443 232 22222233456899999
Q ss_pred CCCCEEEEEe-cCCeEEEEEccc-ceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc-CCCeEEEEc
Q psy11036 136 SGGKRLISAS-LDHHAKIYEMTL-KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS-GGKRLISAS 207 (239)
Q Consensus 136 ~~~~~l~~~~-~d~~i~i~d~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s 207 (239)
||++.|..+. ..+.|..|+++. ..+. ....+. ..+..-.+++.+ +|++.+++.
T Consensus 230 pDg~~lYvadt~~~~I~~~~~~~~g~l~------------------~~~~~~-~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 230 PDGKYVYIAELLAHKIHVYEKHANWTLT------------------PLRVLS-FDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSCEE------------------EEEEEE-CSSEEEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEEeCCCCeEEEEEECCCCcEe------------------cCEEEe-CCCCCceEEEeCCCCcEEEEec
Confidence 9998777665 467888888761 1110 011111 134566788888 588777554
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.58 Score=34.94 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=33.6
Q ss_pred CCCEEEEeeCC-------CeEEEEeCCCCCceeeecCCCCE--EEEEEecCCcEEEEeC--C-----CcEEEEEcc
Q psy11036 54 SSDIVISGSYD-------KTVNVYDTRSPDPVMSVNHGSPV--ESVLCLPSGGIFVTGG--G-----LDVCIWDML 113 (239)
Q Consensus 54 ~~~~l~s~~~d-------g~v~vw~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~--~-----~~i~~~d~~ 113 (239)
++.+++.|+.+ ..+.+||..+.+....-..+.+. .+++. .++++++.|+ + ..+.+||+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCC
Confidence 56777777764 25788888876543321111111 11222 4677777776 1 358899987
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.85 Score=34.62 Aligned_cols=30 Identities=7% Similarity=-0.119 Sum_probs=18.9
Q ss_pred cCCCeEEEEcCCc------eEEEEEccCCeeeEEec
Q psy11036 198 SGGKRLISASLDH------HAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 198 ~~~~~l~s~s~d~------~i~iwd~~~~~~~~~~~ 227 (239)
.++++++.|+.++ .|.++++++++.+...+
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 4677777777542 46667888877766544
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=2 Score=36.20 Aligned_cols=91 Identities=14% Similarity=0.253 Sum_probs=48.8
Q ss_pred CCCEEEEeeCCC------eEEEEeCCCCCceee--ecCCCCEEEEEEecCCcEEEEeC-C--CcEEEEEccCCCeEEEEE
Q psy11036 54 SSDIVISGSYDK------TVNVYDTRSPDPVMS--VNHGSPVESVLCLPSGGIFVTGG-G--LDVCIWDMLGGGKLLHKF 122 (239)
Q Consensus 54 ~~~~l~s~~~dg------~v~vw~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~--~~i~~~d~~~~~~~~~~~ 122 (239)
++.+++.|+.++ .+.+||..+.+.... +.....-.+++...++..++.|+ + +.+.+||+. ... ...+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~-t~~-W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVT-EEI-FKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETT-TTE-EEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECC-CCc-eEEc
Confidence 456777777543 577889887643322 11111112233324788888887 3 378999987 332 2222
Q ss_pred ec------cCCceEEEEEcCC-CCEEEEEec
Q psy11036 123 TC------HHKTVTSLCLASG-GKRLISASL 146 (239)
Q Consensus 123 ~~------~~~~i~~i~~~~~-~~~l~~~~~ 146 (239)
.. .......+.+..+ ++.++.|+.
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~ 559 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGG 559 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCB
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCc
Confidence 21 1122233555544 566777765
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=94.20 E-value=3 Score=37.48 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=47.3
Q ss_pred CCeEEEEEecCC-----CCEEEEeeC-CCeEEEEeCCCCCceeee--cCCCCEEEEEEec--CCcEEEEeC-CCcEEEEE
Q psy11036 43 DYVRAGTVSPVS-----SDIVISGSY-DKTVNVYDTRSPDPVMSV--NHGSPVESVLCLP--SGGIFVTGG-GLDVCIWD 111 (239)
Q Consensus 43 ~~v~~~~~~~~~-----~~~l~s~~~-dg~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~--~~~~l~~~~-~~~i~~~d 111 (239)
..|.|+++.|.. .++++.|.. |++++|+++.+.+.+... +......++.+.. ...++.+|- ||.+..+.
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~ 633 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFG 633 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEE
Confidence 679999998632 368999986 999999999877665543 2233445554432 234555555 78876666
Q ss_pred cc
Q psy11036 112 ML 113 (239)
Q Consensus 112 ~~ 113 (239)
+.
T Consensus 634 ~d 635 (1158)
T 3ei3_A 634 LN 635 (1158)
T ss_dssp EC
T ss_pred Ec
Confidence 54
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=93.80 E-value=2.1 Score=39.31 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=51.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC-Cceeee-cC----CCCEEEEEEecCCcEEEEeC--------CCcEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP-DPVMSV-NH----GSPVESVLCLPSGGIFVTGG--------GLDVC 108 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~-~~----~~~v~~~~~~~~~~~l~~~~--------~~~i~ 108 (239)
.+|.-=.|-. .+.|+-.+ +..|.-|++... .++..+ .| ...|..-..+++.++++..| .|.+.
T Consensus 106 e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQ 182 (1630)
T 1xi4_A 106 DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 182 (1630)
T ss_pred CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceee
Confidence 3454445553 34443333 357999999643 444444 22 45677888889999888654 27788
Q ss_pred EEEccCCCeEEEEEeccCCceEEEE
Q psy11036 109 IWDMLGGGKLLHKFTCHHKTVTSLC 133 (239)
Q Consensus 109 ~~d~~~~~~~~~~~~~~~~~i~~i~ 133 (239)
+|..+ .+..+.+.+|.+....+.
T Consensus 183 LyS~e--r~~sQ~iegha~~F~~~~ 205 (1630)
T 1xi4_A 183 LYSVD--RKVSQPIEGHAASFAQFK 205 (1630)
T ss_pred eeecc--cccchhhhHhHhhhheec
Confidence 99885 444455556655443333
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.73 E-value=1.5 Score=32.30 Aligned_cols=88 Identities=23% Similarity=0.266 Sum_probs=46.6
Q ss_pred CCCEEEEeeCC-----CeEEEEeCCCCCceee--ecCCC-CEEEEEEecCCcEEEEeC-C-----CcEEEEEccCCCeEE
Q psy11036 54 SSDIVISGSYD-----KTVNVYDTRSPDPVMS--VNHGS-PVESVLCLPSGGIFVTGG-G-----LDVCIWDMLGGGKLL 119 (239)
Q Consensus 54 ~~~~l~s~~~d-----g~v~vw~~~~~~~~~~--~~~~~-~v~~~~~~~~~~~l~~~~-~-----~~i~~~d~~~~~~~~ 119 (239)
++.+++.|+.+ ..+.+||+.+.+.... +.... ...++. -++++++.|+ + ..+.+||+. ..+ .
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~-~~~-W 234 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIR-TDS-W 234 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETT-TTE-E
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCC-CCc-E
Confidence 56777887765 4588999887654332 11111 122222 2567777776 2 468899987 333 2
Q ss_pred EEEecc---CCceEEEEEcCCCCEEEEEecC
Q psy11036 120 HKFTCH---HKTVTSLCLASGGKRLISASLD 147 (239)
Q Consensus 120 ~~~~~~---~~~i~~i~~~~~~~~l~~~~~d 147 (239)
..+... ......+.+ +++.++.|+.+
T Consensus 235 ~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 263 (301)
T 2vpj_A 235 TTVTSMTTPRCYVGATVL--RGRLYAIAGYD 263 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred EECCCCCCcccceeEEEE--CCEEEEEcCcC
Confidence 222211 111122222 56667777655
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=93.59 E-value=0.55 Score=38.30 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=66.5
Q ss_pred CCeEEEEEecCCCCEE-EEeeCCCeEEEEeCCCC------Cc-------eeeecCCCCEEEEEEecCCcEEEEeC-CCcE
Q psy11036 43 DYVRAGTVSPVSSDIV-ISGSYDKTVNVYDTRSP------DP-------VMSVNHGSPVESVLCLPSGGIFVTGG-GLDV 107 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~------~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i 107 (239)
.....+..+| +++++ ++|-.+.++.++|+++. +. ....+..-.....+|.++|....+-- |..|
T Consensus 323 ksPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence 4456889999 55554 55667889999998742 11 12223455678899999994444443 8999
Q ss_pred EEEEccCC---------CeEEEEEeccCCceEEEE-----EcCCCCEEEEEe
Q psy11036 108 CIWDMLGG---------GKLLHKFTCHHKTVTSLC-----LASGGKRLISAS 145 (239)
Q Consensus 108 ~~~d~~~~---------~~~~~~~~~~~~~i~~i~-----~~~~~~~l~~~~ 145 (239)
.-|++... ...+.++.-|-++-.-.+ -.|+|++|++..
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 99999731 246667766655433222 256888888865
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=93.52 E-value=2.3 Score=33.81 Aligned_cols=60 Identities=8% Similarity=0.097 Sum_probs=38.7
Q ss_pred CCCEEEEEEecCCcEEEEeCC-CcEEEEEccCCCeE--EEEEec------cCCceEEEEEcCC---CCEEEEE
Q psy11036 84 GSPVESVLCLPSGGIFVTGGG-LDVCIWDMLGGGKL--LHKFTC------HHKTVTSLCLASG---GKRLISA 144 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~~-~~i~~~d~~~~~~~--~~~~~~------~~~~i~~i~~~~~---~~~l~~~ 144 (239)
-.....|+|.|+|+++++-.. +.|.+++.. .+.. +..+.. .......|+|+|+ +..|...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~-~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECC-CCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 345679999999998888776 468888764 3332 222221 2456779999995 4444443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.35 E-value=2.1 Score=32.74 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=38.0
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeE--EEEE----eccCCceEEEEEcCC
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKL--LHKF----TCHHKTVTSLCLASG 137 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~--~~~~----~~~~~~i~~i~~~~~ 137 (239)
.-.....|+|.|+|.++++-. .|.|.+++.. .++. +..+ .........|+++|+
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~-~g~~~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAK-TGRKTELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECC-CCcEeeecccCceeecCCCCceeeEeccc
Confidence 345678999999999888887 7999988764 3332 2212 123456789999995
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.08 E-value=1.9 Score=31.68 Aligned_cols=113 Identities=11% Similarity=0.056 Sum_probs=68.3
Q ss_pred CCCeEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCC----cee--eecCCCCEEEEEEecCC-cEEEEeCCCcEEEEEcc
Q psy11036 42 QDYVRAGTVSPV-SSDIVISGSYDKTVNVYDTRSPD----PVM--SVNHGSPVESVLCLPSG-GIFVTGGGLDVCIWDML 113 (239)
Q Consensus 42 ~~~v~~~~~~~~-~~~~l~s~~~dg~v~vw~~~~~~----~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~~~i~~~d~~ 113 (239)
.+.|..+.. ++ +...++..+.+|.++...+..-. -.. .+.....+..+...... ..++....|.+..++..
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 356777644 42 35788889999999998865432 111 22344556555554444 45555557887777653
Q ss_pred C--------CCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 114 G--------GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 114 ~--------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
. .+.....+.. ...|..+...+++..++..+..|.++...+.
T Consensus 146 eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 146 EVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHE 195 (276)
T ss_dssp GSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGG
T ss_pred hCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHH
Confidence 1 1112222222 3456666555666788899999999888876
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.71 E-value=2.3 Score=31.58 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=32.3
Q ss_pred CCCEEEEeeC----C-------CeEEEEeCCCCCceeeecCCCCE--EEEEEecCCcEEEEeC-C--------CcEEEEE
Q psy11036 54 SSDIVISGSY----D-------KTVNVYDTRSPDPVMSVNHGSPV--ESVLCLPSGGIFVTGG-G--------LDVCIWD 111 (239)
Q Consensus 54 ~~~~l~s~~~----d-------g~v~vw~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~-~--------~~i~~~d 111 (239)
++.+++.|+. + ..+.+||..+.+....-..+.+- .+++.. ++..++.|+ + ..+.+||
T Consensus 45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d 123 (315)
T 4asc_A 45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYD 123 (315)
T ss_dssp TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEEC
Confidence 6778888874 1 12778888876543221111111 122222 566666666 1 4588899
Q ss_pred cc
Q psy11036 112 ML 113 (239)
Q Consensus 112 ~~ 113 (239)
+.
T Consensus 124 ~~ 125 (315)
T 4asc_A 124 RL 125 (315)
T ss_dssp TT
T ss_pred CC
Confidence 87
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.54 E-value=2.6 Score=31.86 Aligned_cols=49 Identities=20% Similarity=0.387 Sum_probs=27.6
Q ss_pred CCCEEEEeeC-C---------CeEEEEeCCCCCceeee--c-CCCCEEEEEEecCCcEEEEeC
Q psy11036 54 SSDIVISGSY-D---------KTVNVYDTRSPDPVMSV--N-HGSPVESVLCLPSGGIFVTGG 103 (239)
Q Consensus 54 ~~~~l~s~~~-d---------g~v~vw~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~ 103 (239)
++.+++.|+. + ..+.+||..+.+....- . ....-.++.. .++++++.|+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEEC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeC
Confidence 5677777776 2 46889998876533321 1 1111122222 5677777777
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=91.70 E-value=3.1 Score=30.89 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=31.3
Q ss_pred CCCEEEEeeC----CC-------eEEEEeCCCCCceee--ecCCCCEEEEEEecCCcEEEEeC-C-------CcEEEEEc
Q psy11036 54 SSDIVISGSY----DK-------TVNVYDTRSPDPVMS--VNHGSPVESVLCLPSGGIFVTGG-G-------LDVCIWDM 112 (239)
Q Consensus 54 ~~~~l~s~~~----dg-------~v~vw~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~-------~~i~~~d~ 112 (239)
++.+++.|+. ++ .+.+||..+.+.... +.....-.+++.. ++..++.|+ + ..+.+||+
T Consensus 56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~ 134 (318)
T 2woz_A 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDP 134 (318)
T ss_dssp SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeC
Confidence 6778888873 12 277888876654322 1111111222222 566666665 2 24778888
Q ss_pred c
Q psy11036 113 L 113 (239)
Q Consensus 113 ~ 113 (239)
.
T Consensus 135 ~ 135 (318)
T 2woz_A 135 V 135 (318)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=91.20 E-value=6.3 Score=33.44 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=84.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-----cCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCe
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-----NHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGK 117 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~ 117 (239)
..|.++.. . ++ .|..++.+ -+..+|..+++..... .....|.++....++.+.+... +.+..++.. ..+
T Consensus 103 ~~i~~i~~-~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~-~~~ 176 (758)
T 3ott_A 103 TDVRTMAL-Q-GD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTY-NGLCRYIPS-NGK 176 (758)
T ss_dssp SCEEEEEE-E-TT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEET-TEEEEEETT-TTE
T ss_pred ceEEEEEe-c-CC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeC-CCHhhCccC-CCc
Confidence 45777654 3 34 45556665 5888898766543220 1235688888888888777554 457778875 333
Q ss_pred EEEEEecc------CCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcE
Q psy11036 118 LLHKFTCH------HKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTV 191 (239)
Q Consensus 118 ~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v 191 (239)
...+... ...|.++...+++..|..|+. +-+..+|.....+..+ ..+ ....|
T Consensus 177 -~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~------------------~~l--~~~~i 234 (758)
T 3ott_A 177 -FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQT------------------EAF--HNNSI 234 (758)
T ss_dssp -EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEE------------------EEE--EEEEE
T ss_pred -eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEec------------------cCC--CCCeE
Confidence 2222211 124788887777665555554 3466677652211111 111 12347
Q ss_pred EEEEEccCCCeEEEEcCCceEEEEEccCCe
Q psy11036 192 TSLCLASGGKRLISASLDHHAKIYEMVNFS 221 (239)
Q Consensus 192 ~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~ 221 (239)
.++....+|.+.+.. .+ -+.+++..+++
T Consensus 235 ~~i~~d~~g~lWigT-~~-Gl~~~~~~~~~ 262 (758)
T 3ott_A 235 KSLALDGNGDLLAGT-DN-GLYVYHNDTTP 262 (758)
T ss_dssp EEEEECTTCCEEEEE-TT-EEEEECCTTSC
T ss_pred EEEEEcCCCCEEEEe-CC-ceeEEecCCCc
Confidence 778777777765543 44 47777776543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.07 E-value=1.3 Score=33.69 Aligned_cols=116 Identities=8% Similarity=0.005 Sum_probs=63.8
Q ss_pred CcEEEEeCCCcEEEEEccCCCeEEEEEecc-CCceEEEEEc--C-CCCEEEEE-ecCCeEEEEEcc-cceEeeeecceeE
Q psy11036 96 GGIFVTGGGLDVCIWDMLGGGKLLHKFTCH-HKTVTSLCLA--S-GGKRLISA-SLDHHAKIYEMT-LKTVSSFTGGLDV 169 (239)
Q Consensus 96 ~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~--~-~~~~l~~~-~~d~~i~i~d~~-~~~~~~~~~~~~i 169 (239)
+..++...||.|.-.|.. +++..-+++.. ..++....-. + ++..++.. +.||.+..++.. +..
T Consensus 11 ~~V~v~t~dG~l~Ald~~-tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~---------- 79 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRR-NGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ---------- 79 (339)
T ss_dssp EEEEEEETTSCEEEEETT-TTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE----------
T ss_pred CEEEEEeCCCeEEEEECC-CCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE----------
Confidence 334444448999999987 78877777643 1232221100 1 22333333 578988888876 211
Q ss_pred EEEEccCCCEEEEEEecccCcEEE---EEE-----ccCCCeEEEEcCCceEEEEEccCCeeeEEecCC
Q psy11036 170 CIWDMLGGGKLLHKFTCHHKTVTS---LCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTLDYP 229 (239)
Q Consensus 170 ~~~d~~~~~~~~~~~~~h~~~v~~---~~~-----s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 229 (239)
.|.... ... ....++.. ... +..+..+++|+.+|++...|+.+|+.+.++...
T Consensus 80 -~~~~~~-~~l-----v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 80 -KLPLSI-RQL-----VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp -EEEEEH-HHH-----HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred -Eeeecc-ccc-----eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 111100 000 01111211 000 013567888999999999999999999998743
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=7.2 Score=32.88 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=54.3
Q ss_pred CCCEEEEeeCC----CeEEEEeCCCCCceeee-c-------CCCCEEEEEEec-CCcEEEEeC-C------CcEEEEEcc
Q psy11036 54 SSDIVISGSYD----KTVNVYDTRSPDPVMSV-N-------HGSPVESVLCLP-SGGIFVTGG-G------LDVCIWDML 113 (239)
Q Consensus 54 ~~~~l~s~~~d----g~v~vw~~~~~~~~~~~-~-------~~~~v~~~~~~~-~~~~l~~~~-~------~~i~~~d~~ 113 (239)
++.+++.|+.+ ..+.+||..+++....- . ....-.+++..+ ++..++.|+ + ..+.+||+.
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 67788888754 46888998877643322 1 111122333343 677777777 2 347888886
Q ss_pred CCCeEEEEEeccCC--ceEEEEEcCCCCEEEEEecCC--eEEEEEcc
Q psy11036 114 GGGKLLHKFTCHHK--TVTSLCLASGGKRLISASLDH--HAKIYEMT 156 (239)
Q Consensus 114 ~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~d~--~i~i~d~~ 156 (239)
+.+ ...+..... .-.+++...+++.++.|+.++ .+.+||..
T Consensus 477 -t~~-W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~ 521 (695)
T 2zwa_A 477 -TRE-WSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVT 521 (695)
T ss_dssp -TTE-EEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETT
T ss_pred -CCc-EEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECC
Confidence 332 222211111 111222323677788887655 45666655
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=90.15 E-value=0.64 Score=40.77 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=33.8
Q ss_pred cEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 190 TVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 190 ~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56777888888999999999999999999999988765
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=89.72 E-value=6.6 Score=31.30 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=34.2
Q ss_pred CCEEEEEEecCCc--EEEEeCCCcEEEEEccCC--CeEEEEEe---------ccCCceEEEEEcCC
Q psy11036 85 SPVESVLCLPSGG--IFVTGGGLDVCIWDMLGG--GKLLHKFT---------CHHKTVTSLCLASG 137 (239)
Q Consensus 85 ~~v~~~~~~~~~~--~l~~~~~~~i~~~d~~~~--~~~~~~~~---------~~~~~i~~i~~~~~ 137 (239)
.....|+|.|++. ++++-..|.|++++.... ...+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4467899999985 777666899999875311 11222221 11356789999996
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.57 E-value=0.8 Score=41.04 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=32.6
Q ss_pred cEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 190 TVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 190 ~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
.+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556667788999999999999999999999998865
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=85.35 E-value=5 Score=35.26 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=32.2
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
..+.+++..+ +..++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 3567777777 6789999999999999999999887765
|
| >3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A | Back alignment and structure |
|---|
Probab=85.13 E-value=2.1 Score=36.10 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=30.8
Q ss_pred cEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecC
Q psy11036 190 TVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDY 228 (239)
Q Consensus 190 ~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 228 (239)
.|.++.+ +..++++-+.|+++|+|++++++++.+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555554 478999999999999999999999888764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=84.69 E-value=10 Score=28.16 Aligned_cols=99 Identities=8% Similarity=-0.041 Sum_probs=55.0
Q ss_pred EEecCCCCEEEEee----CCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCC--CcEEEEEccCCCeEEEEE
Q psy11036 49 TVSPVSSDIVISGS----YDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGG--LDVCIWDMLGGGKLLHKF 122 (239)
Q Consensus 49 ~~~~~~~~~l~s~~----~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~~i~~~d~~~~~~~~~~~ 122 (239)
.|++ .++.|+-.. .+..|..-++..........+.. .+++|+++.|+-.++ ..|...++. .+... .+
T Consensus 110 ~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~-g~~~~-~l 182 (302)
T 3s25_A 110 YASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTA-SQSEA-LF 182 (302)
T ss_dssp EEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETT-TTEEE-EE
T ss_pred EEEE-eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECC-CCCEE-EE
Confidence 6677 455555443 33456556665433333223322 456788888887763 678887876 33333 33
Q ss_pred eccCCceEEEEEcCCCCEEEEEecCC--eEEEEEccc
Q psy11036 123 TCHHKTVTSLCLASGGKRLISASLDH--HAKIYEMTL 157 (239)
Q Consensus 123 ~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~i~d~~~ 157 (239)
.. +... ..+.|++.+|+-...++ .|..-++++
T Consensus 183 ~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 183 YD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp EC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred eC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 22 2222 34668888887765443 555555553
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=84.37 E-value=10 Score=27.83 Aligned_cols=27 Identities=4% Similarity=-0.020 Sum_probs=15.6
Q ss_pred cEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 190 TVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 190 ~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
.|..++...+...+++ ||.|+.|-...
T Consensus 220 ~v~~i~~G~~h~~al~---~g~v~~wG~n~ 246 (282)
T 3qhy_B 220 GVSAIASGEWYSLALK---NGKVIAWGSSR 246 (282)
T ss_dssp SCCEEEECSSCEEEEE---TTEEEEESTTC
T ss_pred CceEEEcCCCEEEEEE---CCEEEEecCCC
Confidence 4666665443333333 88898886544
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=84.05 E-value=13 Score=28.78 Aligned_cols=141 Identities=9% Similarity=0.075 Sum_probs=78.8
Q ss_pred CEEEEeeCCCc--ceeeeeeCCceeeccceeeccCCCCCeEEEEEe---cC--C-CCE-EEEeeCCCeEEEEeCCCCCce
Q psy11036 8 LIVALWDIPSE--AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVS---PV--S-SDI-VISGSYDKTVNVYDTRSPDPV 78 (239)
Q Consensus 8 g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~--~-~~~-l~s~~~dg~v~vw~~~~~~~~ 78 (239)
-.|.+||+.++ +.++++.-.... ......+..+++. |. . +.+ .++=+..+.|.|+|+.+++..
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~--------~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~sw 194 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRL--------VEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSW 194 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGG--------CCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred ceEEEEECCCCCceeEEEEECCHHh--------cccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEE
Confidence 37889999998 888887654311 0112568888888 21 1 223 333334678999999988755
Q ss_pred eeec----C---------------CCCEEEEEEecC----CcEEEEeCCCcEEEEEcc-----CC--CeEEEEEecc--C
Q psy11036 79 MSVN----H---------------GSPVESVLCLPS----GGIFVTGGGLDVCIWDML-----GG--GKLLHKFTCH--H 126 (239)
Q Consensus 79 ~~~~----~---------------~~~v~~~~~~~~----~~~l~~~~~~~i~~~d~~-----~~--~~~~~~~~~~--~ 126 (239)
+.+. . ...+..|+.+|+ ++.|+-..-..-++|.+. .. ...++.+-.. .
T Consensus 195 Rv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~ 274 (381)
T 3q6k_A 195 NVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKY 274 (381)
T ss_dssp EEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTT
T ss_pred EEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCC
Confidence 4431 1 236777888887 666665552222333322 11 1112222111 1
Q ss_pred CceEEEEEc-CCCCEEEEEecCCeEEEEEcc
Q psy11036 127 KTVTSLCLA-SGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 127 ~~i~~i~~~-~~~~~l~~~~~d~~i~i~d~~ 156 (239)
..-..++.. .+|..+++--..+.|..|+..
T Consensus 275 s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~ 305 (381)
T 3q6k_A 275 NDAIALAYDPKTKVIFFAEANTKQVSCWNTQ 305 (381)
T ss_dssp CCEEEEEECTTTCEEEEEESSSSEEEEEETT
T ss_pred CCcceEEEeCCCCeEEEEeccCCeEEEEeCC
Confidence 223345564 566666666677777777765
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=82.50 E-value=12 Score=27.38 Aligned_cols=104 Identities=12% Similarity=0.018 Sum_probs=53.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee-eecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM-SVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHK 121 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~ 121 (239)
..|..++... ...++. . ||.|..|-.......- -......|..++.-... .++.. +|.|..|-....++.-.
T Consensus 63 ~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg~- 135 (282)
T 3qhy_B 63 SGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTTV- 135 (282)
T ss_dssp SCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTSC-
T ss_pred CCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCCC-
Confidence 4566666543 233333 4 8888888765322111 11223467777766543 34444 88888887653333211
Q ss_pred EeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 122 FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 122 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
-......|..++...+ +.+.-. ||.+..|-..
T Consensus 136 ~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 136 PAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDN 167 (282)
T ss_dssp CGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECC
T ss_pred CccCCCCeEEEEcccC--EEEEEE-CCEEEEecCC
Confidence 0112345666655332 222233 6777777554
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=80.75 E-value=20 Score=28.59 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=60.0
Q ss_pred CCeEEEEEecCCCC-EEEEeeCCCeEEEEeCCCC---Cceeeec----------CCCCEEEEEEecC----CcEEEEeC-
Q psy11036 43 DYVRAGTVSPVSSD-IVISGSYDKTVNVYDTRSP---DPVMSVN----------HGSPVESVLCLPS----GGIFVTGG- 103 (239)
Q Consensus 43 ~~v~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~~---~~~~~~~----------~~~~v~~~~~~~~----~~~l~~~~- 103 (239)
.....|+|.| ++. .|+++...|.|++++.... +.+..+. .......|+++|+ +.+.++-+
T Consensus 14 ~~P~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSG-DGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCS-SSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECC-CCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 5567999999 554 4555577899999975422 1222221 1456889999996 43333322
Q ss_pred --CC----------cEEEEEccC---------CCeEEEEEe--ccCCceEEEEEcCCCCEEEEEecC
Q psy11036 104 --GL----------DVCIWDMLG---------GGKLLHKFT--CHHKTVTSLCLASGGKRLISASLD 147 (239)
Q Consensus 104 --~~----------~i~~~d~~~---------~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d 147 (239)
++ .|.-|.+.. ..+.+..+. .....-..|+|.|||.+.++.+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 11 344455531 122333333 112345789999999877776543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 239 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.002 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.004 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.001 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.003 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.004 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.002 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.004 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.9 bits (172), Expect = 4e-15
Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 23/163 (14%)
Query: 56 DIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG--GLDVCIWDM 112
+ +SG+ D + ++D R + H S + ++ P+G F TG
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
+ + +TS+ + G+ L++ D + +W
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-------------------CNVW 297
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIY 215
D H V+ L + G + + S D KI+
Sbjct: 298 D-ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.0 bits (154), Expect = 1e-12
Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 20/148 (13%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
LWD+ TFT H + A P + + +GS D T +
Sbjct: 208 AKLWDVREGMCRQTFTGHE--------------SDINAICFFP-NGNAFATGSDDATCRL 252
Query: 70 YDTRSPDPVMSVNHGSPVESVLCL---PSGGIFVTGGG-LDVCIWDMLGGGKLLHKFTCH 125
+D R+ +M+ +H + + + + SG + + G + +WD H
Sbjct: 253 FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRAGVLAGH 311
Query: 126 HKTVTSLCLASGGKRLISASLDHHAKIY 153
V+ L + G + + S D KI+
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 36.6 bits (83), Expect = 0.002
Identities = 30/221 (13%), Positives = 65/221 (29%), Gaps = 29/221 (13%)
Query: 42 QDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGS-PVESVLCLPSGGIFV 100
+ A S +++S S D + ++D+ + + V ++ S V + PSG
Sbjct: 55 LAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 101 ------------------------TGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS 136
G + + T + +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173
Query: 137 GGKRLISASLDHHAKIYEMTLKTVSSFTGGLD--VCIWDMLGGGKLLHKFTCHHKTVTSL 194
G + + T +G D +WD + G FT H + ++
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD-VREGMCRQTFTGHESDINAI 232
Query: 195 CLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSI 235
C G + S D +++++ + T + + + I
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 35.5 bits (80), Expect = 0.004
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPS-PVLSIDV 237
+ H + ++ + + L+SAS D I++ + VH + S V++
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 238 SM 239
+
Sbjct: 106 AP 107
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.1 bits (157), Expect = 5e-13
Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 8/152 (5%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV-----SSDIVISGSYD 64
V +W + ++ + H + + + + T S ++SGS D
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226
Query: 65 KTVNVYDTRSPDPVMS-VNHGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKF 122
KT+ ++D + +M+ V H + V VL G ++ + +WD + +
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD-YKNKRCMKTL 285
Query: 123 TCHHKTVTSLCLASGGKRLISASLDHHAKIYE 154
H VTSL +++ S+D K++E
Sbjct: 286 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.5 bits (150), Expect = 3e-12
Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 6/189 (3%)
Query: 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGGGLDVCIWDM 112
+ D ++S S DKT+ +++ ++ V + H V V G + + +
Sbjct: 112 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLD--VC 170
+ + + H V + A + +G D +
Sbjct: 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL-LSGSRDKTIK 230
Query: 171 IWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YP 229
+WD+ G L H V + SGGK ++S + D ++++ N + TL+ +
Sbjct: 231 MWDV-STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 289
Query: 230 SPVLSIDVS 238
V S+D
Sbjct: 290 HFVTSLDFH 298
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.5 bits (150), Expect = 4e-12
Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 41/184 (22%)
Query: 54 SSDIVISGSYDKTVNVYDTRSPDPV---------------------MSVNHGSPVESVLC 92
++ S S D+TV V+ + + S++ + E+
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213
Query: 93 LPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 152
G ++G + G L H V + SGGK ++S + D
Sbjct: 214 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT--- 270
Query: 153 YEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 212
+ +WD + + H VTSL +++ S+D
Sbjct: 271 ----------------LRVWD-YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 313
Query: 213 KIYE 216
K++E
Sbjct: 314 KVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.8 bits (112), Expect = 3e-07
Identities = 33/187 (17%), Positives = 64/187 (34%), Gaps = 22/187 (11%)
Query: 42 QDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFV 100
+ V P +++S S D T+ V+D + D ++ H V+ + SG +
Sbjct: 17 RSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75
Query: 101 TGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTV 160
+ G + + H V+S+ + G ++SAS D K++
Sbjct: 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW------- 128
Query: 161 SSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNF 220
+ G + FT H + V + G + S S D +++ +
Sbjct: 129 -------------EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 175
Query: 221 SPVHTLD 227
L
Sbjct: 176 ECKAELR 182
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.4 bits (85), Expect = 0.001
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 178 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227
+ + H VT + ++SAS D K+++ TL
Sbjct: 7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK 56
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.9 bits (81), Expect = 0.003
Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 22/133 (16%)
Query: 116 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM-TLKTVSSFTGGLD------ 168
+ + H VT + ++SAS D K+++ T + G D
Sbjct: 7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS 66
Query: 169 ---------------VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAK 213
G + + H V+S+ + G ++SAS D K
Sbjct: 67 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126
Query: 214 IYEMVNFSPVHTL 226
++E+ V T
Sbjct: 127 MWEVQTGYCVKTF 139
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.5 bits (137), Expect = 2e-10
Identities = 37/194 (19%), Positives = 59/194 (30%), Gaps = 46/194 (23%)
Query: 50 VSPVSSDIVISGSYDKTVNVYDTRS--------PDPVMSVNHGSPVESVLCLPSGGIFVT 101
VSP + +GS D+ V V+D+ + + H V SV+ G V+
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271
Query: 102 GGGLDVCIWDMLGGGKL------------LHKFTCHHKTVTSLCLASGGKRLISASLDHH 149
G L + H V S+ + ++S S D
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331
Query: 150 AKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG------GKRL 203
V WD G L H +V S+ +A+G
Sbjct: 332 -------------------VLFWD-KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371
Query: 204 ISASLDHHAKIYEM 217
+ S D A+I++
Sbjct: 372 ATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.6 bits (127), Expect = 4e-09
Identities = 40/187 (21%), Positives = 76/187 (40%), Gaps = 17/187 (9%)
Query: 61 GSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLD--VCIWDMLGG--- 115
GS D+TV ++D R+ ++++ V +V P G ++ G LD V +WD G
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 116 ---GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
T H +V S+ G+ ++S SLD K++ + +
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW--------NLQNANNKSDS 292
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSP 231
G + H V S+ + ++S S D ++ + +P+ L + +
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 352
Query: 232 VLSIDVS 238
V+S+ V+
Sbjct: 353 VISVAVA 359
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.5 bits (80), Expect = 0.004
Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 6/130 (4%)
Query: 98 IFVTGGGLDVCIWDMLGGGKL---LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 154
+++ ++ LHK H V + ++ G+ L +
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRV 90
Query: 155 MTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 214
V+ + + + S+C + GK L + + D +I
Sbjct: 91 SDGSLVARLSDD---SAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRI 147
Query: 215 YEMVNFSPVH 224
+++ N V
Sbjct: 148 WDIENRKIVM 157
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 1e-06
Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 15/164 (9%)
Query: 52 PVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWD 111
V+SGS D ++ V+D + + + ++ + S + L + V IWD
Sbjct: 184 QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWD 243
Query: 112 MLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCI 171
+ G L + CL +I++S D K++++ TG +
Sbjct: 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK-------TGEFIRNL 296
Query: 172 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIY 215
+ GG V + ++ S + +
Sbjct: 297 VTLESGG--------SGGVVWRIRASNTKLVCAVGSRNGTEETK 332
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 4e-04
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 172 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPS 230
W G K H V + CL G R++S S D+ K++ V + TL +
Sbjct: 1 WR-RGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
Query: 231 PVLSIDVS 238
V S +
Sbjct: 59 GVWSSQMR 66
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (82), Expect = 0.002
Identities = 34/202 (16%), Positives = 67/202 (33%), Gaps = 27/202 (13%)
Query: 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGGGLDVCIWDM 112
+ ++SGS D T+ V+ + + ++ H V S + I + +
Sbjct: 26 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS----TDRTLKV 81
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
T + T T C+ KR++S S D +++++ G +
Sbjct: 82 WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141
Query: 173 DM--------------------LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 212
+ LH H T L G ++S SLD
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQFDGIHVVSGSLDTSI 199
Query: 213 KIYEMVNFSPVHTLDYPSPVLS 234
+++++ + +HTL + S
Sbjct: 200 RVWDVETGNCIHTLTGHQSLTS 221
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 1e-06
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 10/111 (9%)
Query: 52 PVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWD 111
+V+SGS D T+ ++D + + + + + I + +WD
Sbjct: 185 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD 244
Query: 112 MLGG--------GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 154
++ L H V L +++S+S D I++
Sbjct: 245 LVAALDPRAPAGTLCLRTLVEHSGRVF--RLQFDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (96), Expect = 3e-05
Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 20/159 (12%)
Query: 60 SGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLD--VCIWDMLGGGK 117
S S D+T+ V++T + + V ++N + CL V G D + +WD+ G
Sbjct: 153 SASGDRTIKVWNTSTCEFVRTLNGHKR--GIACLQYRDRLVVSGSSDNTIRLWDIECGAC 210
Query: 118 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGG 177
L KR++S + D K++++ G
Sbjct: 211 LRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPR-----------APAG 256
Query: 178 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
L H V L +++S+S D I++
Sbjct: 257 TLCLRTLVEHSGRVF--RLQFDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.002
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 177 GGKLLHKFTCHHKTVTS-LCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
G L + C +T CL ++++S D+ KI++ L
Sbjct: 1 GRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL 51
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 3e-06
Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 22/159 (13%)
Query: 60 SGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLL 119
+G D TV +D R + + S + S+ P+G G +
Sbjct: 200 TGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK- 258
Query: 120 HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGK 179
++ H V SL A GK +S D+ + W G
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNL-------------------LNAWRTPYGAS 299
Query: 180 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218
+ + +V S ++ K +++ S D A +YE++
Sbjct: 300 IFQ--SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 4e-06
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLD--VCIWD 111
+S D +N + T + S V S VTG G D +++
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG-DKKATVYE 334
Query: 112 ML 113
++
Sbjct: 335 VI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 1e-05
Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Query: 58 VISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGG-- 115
+ D + R + ++NHG V +V TGG V +WD+
Sbjct: 25 PVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN 84
Query: 116 --GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 155
+ S L G LI I+++
Sbjct: 85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 2e-04
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 182 HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVS 238
++ H V SL A GK +S D+ + + + S VLS D+S
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS 315
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.2 bits (105), Expect = 3e-06
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 83 HGSPVESVLCL---PSGGIFVTGGG-LDVCIWDMLGGG-KLLHKFTCHHKTVTSLCLASG 137
H VE + C +V I++ G +H+ H+ VT + A
Sbjct: 3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62
Query: 138 GKRLISASLDHHAKIYEM 155
R+++ D +A ++ +
Sbjct: 63 SNRIVTCGTDRNAYVWTL 80
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.3 bits (100), Expect = 1e-05
Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 22/106 (20%)
Query: 120 HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG- 178
H F + ++ ++ +H V I++ G
Sbjct: 3 HSF--LVEPISCHAWNKDRTQIAICPNNHE-------------------VHIYEKSGNKW 41
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVH 224
+H+ H+ VT + A R+++ D +A ++ + +
Sbjct: 42 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 87
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 8e-06
Identities = 21/201 (10%), Positives = 59/201 (29%), Gaps = 32/201 (15%)
Query: 53 VSSDIVISGSYDKTVNVYDTRSPDPV-------------MSVNHGSPVESVLCLPSGGIF 99
+ +S S D + V+D + D ++H ++++
Sbjct: 22 ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 81
Query: 100 VTGGGLD--VCIWDMLGGGKL---------LHKFTCHHKTVTSLCLASGG-----KRLIS 143
V + + + + L + +L + RL++
Sbjct: 82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA 141
Query: 144 ASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 203
+ I++ + + L + L + + TS+ ++ G +
Sbjct: 142 TDVKGTTYIWK--FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL-I 198
Query: 204 ISASLDHHAKIYEMVNFSPVH 224
+ + +I E+ P++
Sbjct: 199 ATGFNNGTVQISELSTLRPLY 219
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.5 bits (85), Expect = 0.001
Identities = 19/157 (12%), Positives = 47/157 (29%), Gaps = 22/157 (14%)
Query: 2 SHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISG 61
+ L++ ++ + + T + L + +V + + + +
Sbjct: 250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF-AHSSWVMSLSFNDSGETLCS-A 307
Query: 62 SYDKTVNVYDTRSPDPVMSVN-HGSPVE----SVLCLPSGGIFVTGGGLDVCIWDMLGGG 116
+D + +D ++ + + ++N H +E + G G DV
Sbjct: 308 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK----- 362
Query: 117 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIY 153
K S A + L LD + +
Sbjct: 363 ----------KGWRSGMGADLNESLCCVCLDRSIRWF 389
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 2e-05
Identities = 13/96 (13%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 35 LMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV----NHGSPVESV 90
+ + P+DY+ + P S +++ S+D ++ VY + + + P+
Sbjct: 4 VQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 91 LCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHH 126
+ + + + G + I + G + ++
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN 98
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 5e-04
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM----VNFSPVHTLDYPSPVLS 234
+++ ++ + + L+ S D +Y+ N + +L Y P+L
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 235 IDVS 238
+
Sbjct: 62 CNFI 65
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 5e-05
Identities = 30/180 (16%), Positives = 68/180 (37%), Gaps = 5/180 (2%)
Query: 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGGGLDVCIWDM 112
+ VI+G+ DK + VYD+ + ++ ++ H V ++ GGI V+G
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL-KYAHGGILVSGSTDRTVRVWD 80
Query: 113 LGGGKLLHKFTCHHKT--VTSLCLASGGKRLISASLDHHAKIYEM-TLKTVSSFTGGLDV 169
+ G H F H+ T + K +++ S D+ ++++ +V D
Sbjct: 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 140
Query: 170 CIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYP 229
+ + ++ G ++S S D+ ++++ ++ L
Sbjct: 141 PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 200
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.8 bits (83), Expect = 0.001
Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 1/94 (1%)
Query: 59 ISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKL 118
+S + D ++ +D S +H + S I V+G I+++ G +
Sbjct: 257 VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLV 316
Query: 119 LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 152
+ S+ G + + D + +
Sbjct: 317 HANILKDADQIWSVNF-KGKTLVAAVEKDGQSFL 349
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.0 bits (94), Expect = 7e-05
Identities = 16/180 (8%), Positives = 36/180 (20%), Gaps = 25/180 (13%)
Query: 56 DIVISGSYDKTVNVYDTRSPDPVMSVN--------HGSPVESVLCLPSGGIFVTGGGLDV 107
+ SY D + V +P G
Sbjct: 191 KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN 250
Query: 108 CIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGL 167
++ + + S +
Sbjct: 251 DMYKRS------SPINVDPGDYRMIIPLESSILIYSVPVHGE------FAAYYQGAPEKG 298
Query: 168 DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227
+ +D+ K T +T L L++ K ++ D + + T++
Sbjct: 299 VLLKYDVKTR-----KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.1 bits (89), Expect = 3e-04
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 94 PSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIY 153
P+G G V +G +T H T + G S + + +I+
Sbjct: 27 PAGDKIQYCNGTSVYTVP-VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW 85
Query: 154 EMT 156
+ T
Sbjct: 86 DTT 88
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 35.6 bits (80), Expect = 0.004
Identities = 8/62 (12%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVES--VLCLPSGGIFVTGGG-LDVCIW 110
+ S S DKT+ +++ + ++ G+ +E + + + V+ +
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
Query: 111 DM 112
+
Sbjct: 309 NP 310
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (86), Expect = 6e-04
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 164 TGGLD--VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218
TG LD + I+ + K++ H V +L + L+S+ D K + +V
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.5 bits (82), Expect = 0.002
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 89 SVLCLPSGGIFVTGGGLD--VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL 146
V G LD + I+ + K++ H V +L + L+S+
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGA 277
Query: 147 DHHAKIY 153
D K +
Sbjct: 278 DACIKRW 284
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.3 bits (84), Expect = 0.001
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 178 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
G + H+K +T+L ++ GK L SA + H +++
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 50
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.9 bits (83), Expect = 0.001
Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 3/96 (3%)
Query: 42 QDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN--HGSPVESVLCLPSGGIF 99
+ A + S + S + +N +D + H + + + G +F
Sbjct: 12 NKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70
Query: 100 VTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 135
+ + G G K + + L LA
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.5 bits (82), Expect = 0.002
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 1/110 (0%)
Query: 116 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM-TLKTVSSFTGGLDVCIWDM 174
G + H+K +T+L ++ GK L SA + H +++ T + F I +
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 175 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVH 224
K + + G A + + + S
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG 111
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 36.8 bits (83), Expect = 0.002
Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 2/137 (1%)
Query: 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGG-IFVTGGGLD-VCIWD 111
S+ I+ S ++V D S ++ GS + P G ++V + V I D
Sbjct: 1 STFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIID 60
Query: 112 MLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCI 171
+ ++ + + + + I + + G
Sbjct: 61 TATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLG 120
Query: 172 WDMLGGGKLLHKFTCHH 188
+ GK L+
Sbjct: 121 LALSPDGKKLYVTNNGD 137
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 35.9 bits (81), Expect = 0.003
Identities = 25/167 (14%), Positives = 44/167 (26%), Gaps = 10/167 (5%)
Query: 56 DIVISGSYDKTVNVYDTRSPDPVMSV---NHGSPVESVLCLPSGG-IFVTGGGLD-VCIW 110
D +++ + + V DT + + G + P G + T + +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 111 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVC 170
D L G+ L + L +S A ++ F
Sbjct: 62 D-LVTGETLGRIDLSTPEERVKSLFG---AALSPDGKTLAIYESPVRLELTHFEVQPTRV 117
Query: 171 IWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 217
F + +T L A G +L D H E
Sbjct: 118 ALYDAETLSRRKAF-EAPRQITMLAWARDGSKLYGLGRDLHVMDPEA 163
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 239 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.98 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.98 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.98 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.96 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.9 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.89 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.88 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.86 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.86 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.84 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.83 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.81 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.81 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.78 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.74 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.65 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.65 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.54 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.51 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.48 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.44 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.39 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.31 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.28 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.28 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.18 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.17 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.16 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.14 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.07 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.06 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.04 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.04 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.98 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.85 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.79 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.72 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.71 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.66 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.57 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.44 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.42 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.36 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.09 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.09 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.94 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.93 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.75 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.68 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.34 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.98 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.91 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.73 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.58 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.57 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.36 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.85 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.82 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.67 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.67 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.61 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.34 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.05 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.84 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.61 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 94.23 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.93 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.13 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 92.11 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 91.12 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.58 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 89.55 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 88.68 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 88.08 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 86.77 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.2e-36 Score=229.02 Aligned_cols=216 Identities=20% Similarity=0.248 Sum_probs=181.0
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee--ee-c
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVM--SV-N 82 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~--~~-~ 82 (239)
.++.|.+||+++++....+.+|. +.|++++|+| ++++|++|+.||+|++||+.+++... .+ .
T Consensus 36 ~~~~v~i~~~~~~~~~~~~~~H~--------------~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~ 100 (311)
T d1nr0a1 36 NGTSVYTVPVGSLTDTEIYTEHS--------------HQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 100 (311)
T ss_dssp ETTEEEEEETTCSSCCEEECCCS--------------SCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred eCCEEEEEECCCCceeEEEcCCC--------------CCEEEEEEeC-CCCeEeccccCceEeeeeeecccccccccccc
Confidence 34679999999999999999998 9999999999 89999999999999999998876543 34 5
Q ss_pred CCCCEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCE-EEEEecCCeEEEEEcc-c
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR-LISASLDHHAKIYEMT-L 157 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d~~i~i~d~~-~ 157 (239)
|..+|.+++|+|+++++++++ +..+++|+++ .++....+.+|...|.+++|+|++++ |++|+.|+.|++||++ .
T Consensus 101 ~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~-~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~ 179 (311)
T d1nr0a1 101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 179 (311)
T ss_dssp SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred ccCccccccccccccccccccccccccccccccc-cccccccccccccccccccccccceeeeccccccccccccccccc
Confidence 889999999999999998887 3569999998 77778888999999999999999875 7889999999999998 4
Q ss_pred ceEeee----------------------ecceeEEEEEccCCCEEEEEE-------ecccCcEEEEEEccCCCeEEEEcC
Q psy11036 158 KTVSSF----------------------TGGLDVCIWDMLGGGKLLHKF-------TCHHKTVTSLCLASGGKRLISASL 208 (239)
Q Consensus 158 ~~~~~~----------------------~~~~~i~~~d~~~~~~~~~~~-------~~h~~~v~~~~~s~~~~~l~s~s~ 208 (239)
+....+ ..++.+.+||..+. .....+ .+|...|.+++|+|++++|++|+.
T Consensus 180 ~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~ 258 (311)
T d1nr0a1 180 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 258 (311)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred ccccccccccccccccccCccccccccccccccccccccccc-cccccccccccccccccccccccccCCCCCEEEEEeC
Confidence 443333 23456999998874 333333 358889999999999999999999
Q ss_pred CceEEEEEccCCeeeEEecCCC----CeeeeEec
Q psy11036 209 DHHAKIYEMVNFSPVHTLDYPS----PVLSIDVS 238 (239)
Q Consensus 209 d~~i~iwd~~~~~~~~~~~~~~----~v~~~~~s 238 (239)
||.|+|||++++++++++.... .+.++.|+
T Consensus 259 Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~ 292 (311)
T d1nr0a1 259 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 292 (311)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEECCCCccceEEEEEec
Confidence 9999999999999999987332 34556554
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-35 Score=225.72 Aligned_cols=216 Identities=19% Similarity=0.341 Sum_probs=184.2
Q ss_pred CCCEEEEeeCCCcceee-----eeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc--e
Q psy11036 6 PILIVALWDIPSEAQVS-----TFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP--V 78 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~--~ 78 (239)
.||.|+|||+.++.... ....|. +.|.+++|+| ++++|++|+.||.|++||+..... .
T Consensus 70 ~dg~V~iWd~~~~~~~~~~~~~~~~~h~--------------~~I~~v~~s~-dg~~l~s~~~dg~i~iwd~~~~~~~~~ 134 (337)
T d1gxra_ 70 GKGCVKVWDISHPGNKSPVSQLDCLNRD--------------NYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIK 134 (337)
T ss_dssp CBSEEEEEETTSTTCCSCSEEEECSCTT--------------SBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEE
T ss_pred ECCEEEEEEccCCcccceeEEeeecCCC--------------CcEEEEEEcC-CCCEEEEeecccccccccccccccccc
Confidence 48999999997654322 234566 8999999999 889999999999999999876543 3
Q ss_pred eee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 79 MSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 79 ~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
..+ .|...+.+++|+|++.++++++ ++.+++|+++ .++.......|...|.+++|++++..+++++.|+.+++||++
T Consensus 135 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~ 213 (337)
T d1gxra_ 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence 334 5788999999999999999888 7999999998 788888888999999999999999999999999999999998
Q ss_pred -cceEeee---------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEE
Q psy11036 157 -LKTVSSF---------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 214 (239)
Q Consensus 157 -~~~~~~~---------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~i 214 (239)
++.+..+ ..++.+++||+++... .....|...|.+++|+|++++|++++.||.|++
T Consensus 214 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~i 291 (337)
T d1gxra_ 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp TTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cceeecccccccceEEEEEcccccccceecccccccccccccccc--ccccccccccceEEECCCCCEEEEEeCCCeEEE
Confidence 5544433 2345599999987443 345778999999999999999999999999999
Q ss_pred EEccCCeeeEEecCCCCeeeeEecC
Q psy11036 215 YEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 215 wd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
||+.+++++..+.+.++|.+++|+|
T Consensus 292 wd~~~~~~~~~~~~~~~v~~~~~s~ 316 (337)
T d1gxra_ 292 WRTPYGASIFQSKESSSVLSCDISV 316 (337)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECT
T ss_pred EECCCCCEEEEccCCCCEEEEEEeC
Confidence 9999999999999999999999987
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.8e-35 Score=221.27 Aligned_cols=219 Identities=22% Similarity=0.346 Sum_probs=198.4
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-c
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-N 82 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~ 82 (239)
.+.||.|+|||+++++.+.++.+|. ..|.+++|+| ++.+++++..++.+.+|+....+....+ .
T Consensus 35 ~s~Dg~i~iWd~~~~~~~~~~~~h~--------------~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (317)
T d1vyhc1 35 ASEDATIKVWDYETGDFERTLKGHT--------------DSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMHG 99 (317)
T ss_dssp EESSSCEEEEETTTCCCCEEECCCS--------------SCEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEEECCCC
T ss_pred EeCCCeEEEEECCCCCEEEEEeCCC--------------CcEEEEeeec-cccccccccccccccccccccccccccccc
Confidence 3578999999999999999999999 9999999999 8999999999999999999888777666 6
Q ss_pred CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceE
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTV 160 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~ 160 (239)
+...+.++.++|++..+++++ |+.+++||++ .++....+..|...+.+++|+|++.+|++++.|+.|++|++. .+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~ 178 (317)
T d1vyhc1 100 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred ccccceeeeccCCCceEEeeccCcceeEeecc-cceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceee
Confidence 889999999999999999888 7999999998 788888999999999999999999999999999999999987 4443
Q ss_pred eee------------------------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEcc
Q psy11036 161 SSF------------------------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLAS 198 (239)
Q Consensus 161 ~~~------------------------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~ 198 (239)
..+ ..++.+++||.++ ++++..+.+|...|.+++|+|
T Consensus 179 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~ 257 (317)
T d1vyhc1 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHS 257 (317)
T ss_dssp EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECS
T ss_pred EEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC-CcEEEEEeCCCCCEEEEEECC
Confidence 332 1245589999886 788889999999999999999
Q ss_pred CCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 199 GGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 199 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
++++|++|+.||.|++||+.+++++.++. |.++|++++|+|
T Consensus 258 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~ 299 (317)
T d1vyhc1 258 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 299 (317)
T ss_dssp SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 99999999999999999999999999998 888999999987
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.1e-35 Score=225.71 Aligned_cols=217 Identities=18% Similarity=0.200 Sum_probs=175.5
Q ss_pred CCCCEEEEeeCCCcc--eeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-
Q psy11036 5 LPILIVALWDIPSEA--QVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~- 81 (239)
+.+|.|+|||+++++ .+..+++|. ++|.+++|+| ++++|++++.|++|++||+.++.....+
T Consensus 26 ~~~~~i~iw~~~~~~~~~~~~l~gH~--------------~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 90 (371)
T d1k8kc_ 26 PNNHEVHIYEKSGNKWVQVHELKEHN--------------GQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLV 90 (371)
T ss_dssp CSSSEEEEEEEETTEEEEEEEEECCS--------------SCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred eCCCEEEEEECCCCCEEEEEEecCCC--------------CCEEEEEECC-CCCEEEEEECCCeEEEEeecccccccccc
Confidence 467999999997765 567789998 9999999999 8999999999999999999877644333
Q ss_pred --cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeE---EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEc
Q psy11036 82 --NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKL---LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 155 (239)
Q Consensus 82 --~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 155 (239)
.+...|.+++|+|+++.+++++ ++.+++|++...... ......|...|.+++|+|++++|++|+.|+.+++|+.
T Consensus 91 ~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~ 170 (371)
T d1k8kc_ 91 ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 170 (371)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred cccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEee
Confidence 5788999999999999999988 799999998743322 2334568899999999999999999999999999998
Q ss_pred ccceEeeeecceeEEEEEcc-CCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCee
Q psy11036 156 TLKTVSSFTGGLDVCIWDML-GGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVL 233 (239)
Q Consensus 156 ~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~ 233 (239)
......... ....|+.. ...+.+.....|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. +..+|.
T Consensus 171 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 247 (371)
T d1k8kc_ 171 YIKEVEERP---APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 247 (371)
T ss_dssp CCTTTSCCC---CCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEE
T ss_pred ccCcccccc---ccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccce
Confidence 721111000 00011111 1235666778899999999999999999999999999999999999999888 677999
Q ss_pred eeEecC
Q psy11036 234 SIDVSM 239 (239)
Q Consensus 234 ~~~~sp 239 (239)
+++|+|
T Consensus 248 s~~fs~ 253 (371)
T d1k8kc_ 248 AVTFIT 253 (371)
T ss_dssp EEEEEE
T ss_pred eeeecC
Confidence 999976
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3e-32 Score=211.32 Aligned_cols=232 Identities=19% Similarity=0.310 Sum_probs=179.7
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeec----cceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYK----VPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS 80 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 80 (239)
|.|+.|+|||+.+++.+..+..+..... ........+...|++++|+| ++++|++|+.||.|++||...++....
T Consensus 80 g~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~~~~~~ 158 (388)
T d1erja_ 80 GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMI 158 (388)
T ss_dssp ECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC-CCCcceecccccccccccccccccccc
Confidence 3589999999999999888876542111 11122334457899999999 899999999999999999999888777
Q ss_pred e-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-c
Q psy11036 81 V-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-L 157 (239)
Q Consensus 81 ~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~ 157 (239)
+ .|...|.++.+++++..+++++ ++.+++||.+ ..........+...+....+.+++++|++++.|+.|++||.+ +
T Consensus 159 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 237 (388)
T d1erja_ 159 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 237 (388)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC
T ss_pred cccccccccccccccccccccccccceeeeeeecc-ccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccC
Confidence 7 6899999999999999998888 7999999998 666666666555544444444588999999999999999987 3
Q ss_pred ceEeee-----------------------------ecceeEEEEEccCCC-----------EEEEEEecccCcEEEEEEc
Q psy11036 158 KTVSSF-----------------------------TGGLDVCIWDMLGGG-----------KLLHKFTCHHKTVTSLCLA 197 (239)
Q Consensus 158 ~~~~~~-----------------------------~~~~~i~~~d~~~~~-----------~~~~~~~~h~~~v~~~~~s 197 (239)
..+..+ ..++.+++||+.+.. ........|...|.+++|+
T Consensus 238 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 317 (388)
T d1erja_ 238 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317 (388)
T ss_dssp CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEEC
T ss_pred ccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEEC
Confidence 332221 234569999986532 2345566789999999999
Q ss_pred cCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEec
Q psy11036 198 SGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 198 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s 238 (239)
|++++|++|+.||.|++||+++++++.++. |.+.|.+++++
T Consensus 318 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~ 359 (388)
T d1erja_ 318 QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 359 (388)
T ss_dssp GGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred CCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEe
Confidence 999999999999999999999999999998 88899998764
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.1e-32 Score=207.05 Aligned_cols=199 Identities=18% Similarity=0.364 Sum_probs=171.0
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc----eee
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDP----VMS 80 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~----~~~ 80 (239)
+.||.|+|||+.+++.+..+..|. .+|.+++|+| ++.++++|+.|+.+++|+...... ...
T Consensus 74 s~Dg~v~iWd~~~~~~~~~~~~~~--------------~~v~~v~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~ 138 (340)
T d1tbga_ 74 SQDGKLIIWDSYTTNKVHAIPLRS--------------SWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRE 138 (340)
T ss_dssp ETTTEEEEEETTTTEEEEEEECSC--------------SCEEEEEECT-TSSEEEEEETTCCEEEEESSSSCSCCCEEEE
T ss_pred ECCCceeeeecccceeEEEEeccc--------------ccEEeeEeec-cceeeeeecccceeeccccccccccccccee
Confidence 578999999999999999999998 9999999999 899999999999999999654321 000
Q ss_pred e------------------------------------------cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCe
Q psy11036 81 V------------------------------------------NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGK 117 (239)
Q Consensus 81 ~------------------------------------------~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~ 117 (239)
+ .+...+....+.+.+.+++++. ++.|++||++ .++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~-~~~ 217 (340)
T d1tbga_ 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-EGM 217 (340)
T ss_dssp ECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TTE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECC-CCc
Confidence 0 1334566677778888888887 8999999999 888
Q ss_pred EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEE--ecccCcEEEEE
Q psy11036 118 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKF--TCHHKTVTSLC 195 (239)
Q Consensus 118 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~h~~~v~~~~ 195 (239)
.+..+.+|...|++++|+|++++|++++.|+.|++||++ .......+ ..+...|.+++
T Consensus 218 ~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~--------------------~~~~~~~~~~~~~~~~i~~~~ 277 (340)
T d1tbga_ 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR--------------------ADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--------------------TTEEEEEECCTTCCSCEEEEE
T ss_pred EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeec--------------------ccccccccccccccCceEEEE
Confidence 999999999999999999999999999999999999998 22333222 34667899999
Q ss_pred EccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 196 LASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 196 ~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
|+|++++|++|+.||.|++||+.+++++..+. |.++|++++|+|
T Consensus 278 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~ 322 (340)
T d1tbga_ 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322 (340)
T ss_dssp ECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC
Confidence 99999999999999999999999999999998 889999999987
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.9e-31 Score=200.16 Aligned_cols=176 Identities=23% Similarity=0.411 Sum_probs=161.2
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NH 83 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~ 83 (239)
+.|+.+++||+++++.+..+..|. ..+.+++|+| ++.+|++++.|+.|++|++.+++....+ .+
T Consensus 120 ~~d~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~ 184 (317)
T d1vyhc1 120 SRDKTIKMWEVQTGYCVKTFTGHR--------------EWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREH 184 (317)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCS--------------SCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred ccCcceeEeecccceeeeEEccCC--------------Ccceeeeccc-CCCEEEEEeCCCeEEEEeeccceeeEEEecC
Confidence 468999999999999999999998 8999999999 8999999999999999999999988887 68
Q ss_pred CCCEEEEEEecCC--------------------cEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEE
Q psy11036 84 GSPVESVLCLPSG--------------------GIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLI 142 (239)
Q Consensus 84 ~~~v~~~~~~~~~--------------------~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 142 (239)
...+.++.++|++ ..+++++ |+.|++||++ .++.+..+.+|...|.+++|+|++++|+
T Consensus 185 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 263 (317)
T d1vyhc1 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTLVGHDNWVRGVLFHSGGKFIL 263 (317)
T ss_dssp SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEECSSSSCEE
T ss_pred CCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC-CCcEEEEEeCCCCCEEEEEECCCCCEEE
Confidence 8889999988754 3566666 8999999998 8889999999999999999999999999
Q ss_pred EEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEE
Q psy11036 143 SASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216 (239)
Q Consensus 143 ~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd 216 (239)
+++.||.|++||++ ..+++..+.+|..+|++++|+|++++|++|+.||+|+|||
T Consensus 264 s~~~dg~i~iwd~~--------------------~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 264 SCADDKTLRVWDYK--------------------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEETTTEEEEECCT--------------------TSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEECCCeEEEEECC--------------------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999999999988 4667777899999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-31 Score=203.49 Aligned_cols=175 Identities=22% Similarity=0.284 Sum_probs=157.4
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCC
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHG 84 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 84 (239)
+.++.|++|++.+++.......|. ..|.+++|++ ++..+++++.|+.+++||+++++.+..+.+.
T Consensus 160 ~~d~~i~~~~~~~~~~~~~~~~~~--------------~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~ 224 (337)
T d1gxra_ 160 CSDGNIAVWDLHNQTLVRQFQGHT--------------DGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224 (337)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCS--------------SCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred cccccccccccccccccccccccc--------------cccccccccc-cccccccccccccccccccccceeecccccc
Confidence 567899999999999998899898 9999999999 7899999999999999999999988888899
Q ss_pred CCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeee
Q psy11036 85 SPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSF 163 (239)
Q Consensus 85 ~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 163 (239)
..|.+++|+|++..+++++ ++.+++||++ ..+. .....|...|++++|+|++++|++++.|+.|++||+.
T Consensus 225 ~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~-~~~~-~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~------- 295 (337)
T d1gxra_ 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVN-KPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP------- 295 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT-SSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-------
T ss_pred cceEEEEEcccccccceecccccccccccc-cccc-ccccccccccceEEECCCCCEEEEEeCCCeEEEEECC-------
Confidence 9999999999999999888 7999999998 4444 3566799999999999999999999999999999988
Q ss_pred ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 164 TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 164 ~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
.++.+..+ .|...|.+++|+|++++|++|+.||+|+|||+
T Consensus 296 -------------~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 296 -------------YGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -------------TCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -------------CCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 34444443 47789999999999999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.1e-31 Score=199.33 Aligned_cols=197 Identities=16% Similarity=0.162 Sum_probs=161.7
Q ss_pred CCCCEEEEeeCCCccee--eeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC--CCeEEEEeCCCCCceee
Q psy11036 5 LPILIVALWDIPSEAQV--STFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY--DKTVNVYDTRSPDPVMS 80 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~v~vw~~~~~~~~~~ 80 (239)
+.||.|+|||+.+++.. ..+..|. ++|.+++|+| ++++|++++. +..+++|++++++....
T Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~--------------~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~ 141 (311)
T d1nr0a1 77 DVHGNVRIWDTTQTTHILKTTIPVFS--------------GPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGN 141 (311)
T ss_dssp ETTSEEEEEESSSTTCCEEEEEECSS--------------SCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBC
T ss_pred ccCceEeeeeeecccccccccccccc--------------Cccccccccc-ccccccccccccccccccccccccccccc
Confidence 46899999999887643 5678888 9999999999 7888888875 45699999999988887
Q ss_pred e-cCCCCEEEEEEecCCcE-EEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-
Q psy11036 81 V-NHGSPVESVLCLPSGGI-FVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT- 156 (239)
Q Consensus 81 ~-~~~~~v~~~~~~~~~~~-l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~- 156 (239)
+ .|...|.+++|+|++++ +++++ |+.|++||++ ..+....+..|..+|+++.|+|+++++++++.|+.|++||++
T Consensus 142 l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~-~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~ 220 (311)
T d1nr0a1 142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 220 (311)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccccccccccccccccceeeeccccccccccccccc-ccccccccccccccccccccCcccccccccccccccccccccc
Confidence 7 68899999999999885 66666 7999999999 788889999999999999999999999999999999999986
Q ss_pred cceEeee-----------------------------ecceeEEEEEccCCCEEEEEEecccC-cEEEEEEccCCCeEEEE
Q psy11036 157 LKTVSSF-----------------------------TGGLDVCIWDMLGGGKLLHKFTCHHK-TVTSLCLASGGKRLISA 206 (239)
Q Consensus 157 ~~~~~~~-----------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~ 206 (239)
...+..+ ..++.|++||+++ ++++..+..|.. ....+.+.++++.|+++
T Consensus 221 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t-~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~ 299 (311)
T d1nr0a1 221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSI 299 (311)
T ss_dssp CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEE
T ss_pred ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC-CcEEEEEECCCCccceEEEEEecCCEEEEE
Confidence 3332221 2245699999976 678888876653 22334455567789999
Q ss_pred cCCceEEEEEcc
Q psy11036 207 SLDHHAKIYEMV 218 (239)
Q Consensus 207 s~d~~i~iwd~~ 218 (239)
+.||.|++||++
T Consensus 300 s~dG~i~~wd~d 311 (311)
T d1nr0a1 300 SANGFINFVNPE 311 (311)
T ss_dssp ETTCCEEEEETT
T ss_pred ECCCEEEEEeCC
Confidence 999999999974
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.6e-29 Score=195.74 Aligned_cols=217 Identities=23% Similarity=0.313 Sum_probs=169.7
Q ss_pred CCCEEEEeeCCCccee----eeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 6 PILIVALWDIPSEAQV----STFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
.++...+|+....+.. ....+|. +.|++++|+| ++++|++|+ |++|++||+.+++.+..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~l~~~~~H~--------------~~V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~~~~~ 99 (388)
T d1erja_ 36 TNDYYILYNPALPREIDVELHKSLDHT--------------SVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARL 99 (388)
T ss_dssp CSSCEEEECTTSCCCEEEEEEEEEECS--------------SCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEE
T ss_pred CCCcEEEeCCCCCcceeeeeEeeCCCC--------------CcEEEEEECC-CCCEEEEEe-CCeEEEEEecccceEeee
Confidence 4577889997544322 2223577 9999999999 789999986 899999999988776554
Q ss_pred -------------------cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEE
Q psy11036 82 -------------------NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141 (239)
Q Consensus 82 -------------------~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 141 (239)
.+...|++++|+|++++|++++ |+.|++||.. .++.+..+.+|...|.++++++++..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 178 (388)
T d1erja_ 100 SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPSGDKL 178 (388)
T ss_dssp CC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred cccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccc-ccccccccccccccccccccccccccc
Confidence 2456699999999999999998 8999999998 888889999999999999999999999
Q ss_pred EEEecCCeEEEEEcc-cceEeee----------------------ecceeEEEEEccCCCEEE------EEEecccCcEE
Q psy11036 142 ISASLDHHAKIYEMT-LKTVSSF----------------------TGGLDVCIWDMLGGGKLL------HKFTCHHKTVT 192 (239)
Q Consensus 142 ~~~~~d~~i~i~d~~-~~~~~~~----------------------~~~~~i~~~d~~~~~~~~------~~~~~h~~~v~ 192 (239)
++++.++.+++||.+ ....... ..++.+.+||..+..... ....+|...|.
T Consensus 179 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~ 258 (388)
T d1erja_ 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 258 (388)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEE
T ss_pred cccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEE
Confidence 999999999999987 3222221 234559999988743322 12346889999
Q ss_pred EEEEccCCCeEEEEcCCceEEEEEccCCeee------------EEe-cCCCCeeeeEecC
Q psy11036 193 SLCLASGGKRLISASLDHHAKIYEMVNFSPV------------HTL-DYPSPVLSIDVSM 239 (239)
Q Consensus 193 ~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~------------~~~-~~~~~v~~~~~sp 239 (239)
+++|+|++++|++++.||.|++||+.+++.. ... .+...|.+++|+|
T Consensus 259 ~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 318 (388)
T d1erja_ 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318 (388)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG
T ss_pred EEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC
Confidence 9999999999999999999999999765432 222 2677899999986
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.98 E-value=2.3e-29 Score=191.00 Aligned_cols=187 Identities=20% Similarity=0.317 Sum_probs=154.3
Q ss_pred cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCC
Q psy11036 18 EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSG 96 (239)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~ 96 (239)
.+..++|++|. ++|++++|+| ++++|++|+.||+|++||+.+++.+..+ .|..+|.+++|+|++
T Consensus 45 ~~~~~tL~GH~--------------~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~ 109 (340)
T d1tbga_ 45 MRTRRTLRGHL--------------AKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109 (340)
T ss_dssp CCEEEEECCCS--------------SCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTS
T ss_pred eeeeEEECCCC--------------CCEEEEEECC-CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccc
Confidence 35667899999 9999999999 8999999999999999999999988888 689999999999999
Q ss_pred cEEEEeC-CCcEEEEEccCC---CeEEEEEec-----------------------------------------cCCceEE
Q psy11036 97 GIFVTGG-GLDVCIWDMLGG---GKLLHKFTC-----------------------------------------HHKTVTS 131 (239)
Q Consensus 97 ~~l~~~~-~~~i~~~d~~~~---~~~~~~~~~-----------------------------------------~~~~i~~ 131 (239)
.++++++ |+.+.+|+.... ......+.+ +...+..
T Consensus 110 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (340)
T d1tbga_ 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189 (340)
T ss_dssp SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred eeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEee
Confidence 9999988 799999987522 112222222 3344566
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCce
Q psy11036 132 LCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHH 211 (239)
Q Consensus 132 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~ 211 (239)
..+.+.+.++++++.|+.|++||++ ..+++..+.+|...|.+++|+|++++|++|+.||.
T Consensus 190 ~~~~~~~~~~~~~~~d~~v~i~d~~--------------------~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~ 249 (340)
T d1tbga_ 190 LSLAPDTRLFVSGACDASAKLWDVR--------------------EGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETT--------------------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eccccccceeEEeecCceEEEEECC--------------------CCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe
Confidence 6666666677777777777777766 47778888999999999999999999999999999
Q ss_pred EEEEEccCCeeeEEec---CCCCeeeeEecC
Q psy11036 212 AKIYEMVNFSPVHTLD---YPSPVLSIDVSM 239 (239)
Q Consensus 212 i~iwd~~~~~~~~~~~---~~~~v~~~~~sp 239 (239)
|++||+...+.+..+. +..++.+++|+|
T Consensus 250 i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 280 (340)
T d1tbga_ 250 CRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp EEEEETTTTEEEEEECCTTCCSCEEEEEECS
T ss_pred EEEEeecccccccccccccccCceEEEEECC
Confidence 9999999999888775 556899999986
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.98 E-value=5.4e-30 Score=192.07 Aligned_cols=206 Identities=15% Similarity=0.147 Sum_probs=165.0
Q ss_pred cceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee--cCCCCEEEEEEecC
Q psy11036 18 EAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--NHGSPVESVLCLPS 95 (239)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~ 95 (239)
|+..+++.+|. ++|++++|+| ++++|++|+.||+|++||+++++....+ .|...|++++|+|+
T Consensus 2 g~~~~~~~GH~--------------~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~ 66 (299)
T d1nr0a2 2 GSIDQVRYGHN--------------KAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66 (299)
T ss_dssp TEEEEEECCCS--------------SCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred CccceEcCCCC--------------CCcEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc
Confidence 56678899999 9999999999 8999999999999999999999988877 47889999999999
Q ss_pred CcEEEEeCCCcEEEEEccCCCe--EEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cc--------------
Q psy11036 96 GGIFVTGGGLDVCIWDMLGGGK--LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LK-------------- 158 (239)
Q Consensus 96 ~~~l~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~-------------- 158 (239)
+.+++++.|+.+++|+...... .......+...+.+++++|+++.++++ .++.+++|+.. ..
T Consensus 67 g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~s 145 (299)
T d1nr0a2 67 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGKLTEVPISYNSSCVALS 145 (299)
T ss_dssp SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred ceeecccceeeEEEeccCCcccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 9988888899999999863211 112234567788999999999876665 46689999864 11
Q ss_pred ----eEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec----CCC
Q psy11036 159 ----TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD----YPS 230 (239)
Q Consensus 159 ----~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----~~~ 230 (239)
.+.....++.+.+||+++..........|...|.+++|+|++++|++++.|+.|++||+.++..+.... |..
T Consensus 146 ~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~ 225 (299)
T d1nr0a2 146 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 225 (299)
T ss_dssp TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 111113456699999887544444556789999999999999999999999999999998877654433 678
Q ss_pred CeeeeEecC
Q psy11036 231 PVLSIDVSM 239 (239)
Q Consensus 231 ~v~~~~~sp 239 (239)
+|++++|+|
T Consensus 226 ~v~~l~~s~ 234 (299)
T d1nr0a2 226 KVACVSWSP 234 (299)
T ss_dssp CEEEEEECT
T ss_pred ccccccccc
Confidence 999999987
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.8e-30 Score=194.66 Aligned_cols=216 Identities=19% Similarity=0.251 Sum_probs=163.7
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN- 82 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~- 82 (239)
.+.||.|+|||+.+++++.++.+|. ++|++++|+| + ++|++|+.|++|++|+....+......
T Consensus 29 gs~Dg~i~vWd~~~~~~~~~l~~H~--------------~~V~~l~~s~-~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~ 92 (355)
T d1nexb2 29 GADDKMIRVYDSINKKFLLQLSGHD--------------GGVWALKYAH-G-GILVSGSTDRTVRVWDIKKGCCTHVFEG 92 (355)
T ss_dssp EETTTEEEEEETTTTEEEEEEECCS--------------SCEEEEEEET-T-TEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EeCCCeEEEEECCCCcEEEEEECCC--------------CCEEEEEEcC-C-CEEEEEeccccccccccccccccccccc
Confidence 4678999999999999999999999 9999999998 3 589999999999999998876655442
Q ss_pred --CCCCEEEEEEecCCcEEEEeC-CCcEEEEEccC---------------------------------------------
Q psy11036 83 --HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLG--------------------------------------------- 114 (239)
Q Consensus 83 --~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~--------------------------------------------- 114 (239)
+........+.+++..+++++ |+.|++||++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (355)
T d1nexb2 93 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN 172 (355)
T ss_dssp CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETT
T ss_pred ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccc
Confidence 223334455566666666655 56666666531
Q ss_pred -----------------CCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee-------------
Q psy11036 115 -----------------GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF------------- 163 (239)
Q Consensus 115 -----------------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~------------- 163 (239)
..+.+.....+...+.++.++|++..+++++.|+.|++||++ +..+..+
T Consensus 173 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~ 252 (355)
T d1nexb2 173 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS 252 (355)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC
T ss_pred eeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc
Confidence 233344455567788899999999999999999999999998 5554443
Q ss_pred -------ecceeEEEEEccCCCEEEEEEecccCcEEEE-EEccCCCeEEEEcCCceEEEEEccCCeeeEEe-c-CCCCee
Q psy11036 164 -------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSL-CLASGGKRLISASLDHHAKIYEMVNFSPVHTL-D-YPSPVL 233 (239)
Q Consensus 164 -------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~-~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~-~~~~v~ 233 (239)
..++.|++||+++..+. +..|...+..+ .+++++++|++| .|+.|++||+++++++... . +.++|.
T Consensus 253 ~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~ 328 (355)
T d1nexb2 253 DKFLVSAAADGSIRGWDANDYSRK---FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIW 328 (355)
T ss_dssp SSEEEEECTTSEEEEEETTTCCEE---EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEE
T ss_pred cceeeeeeccccccccccccccee---cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEE
Confidence 23456999999875433 34566666655 456677777666 4899999999999998653 3 778999
Q ss_pred eeEecC
Q psy11036 234 SIDVSM 239 (239)
Q Consensus 234 ~~~~sp 239 (239)
+++|+|
T Consensus 329 ~v~~~~ 334 (355)
T d1nexb2 329 SVNFKG 334 (355)
T ss_dssp EEEEET
T ss_pred EEEEcC
Confidence 999987
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=6.6e-30 Score=197.62 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=147.4
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC--ceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD--PVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~ 118 (239)
++|+|++|+| ++++|++|+.|+.|++||+.+++ .+..+ +|..+|.+++|+|++++|++++ |+.|++||++ .+..
T Consensus 8 ~pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~-~~~~ 85 (371)
T d1k8kc_ 8 EPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK-GRTW 85 (371)
T ss_dssp SCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE-TTEE
T ss_pred CCeEEEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec-cccc
Confidence 7899999999 89999999999999999998775 44455 6999999999999999999988 8999999998 4443
Q ss_pred --EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEE
Q psy11036 119 --LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLC 195 (239)
Q Consensus 119 --~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~ 195 (239)
...+..|...|.+++|+|+++.|++++.|+.+++|++. .... .........|...|.+++
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~-----------------~~~~~~~~~~~~~v~~v~ 148 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW-----------------WVCKHIKKPIRSTVLSLD 148 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE-----------------EEEEEECTTCCSCEEEEE
T ss_pred ccccccccccccccccccccccccceeecccCcceeeeeeccccc-----------------cccccccccccccccccc
Confidence 34456788999999999999999999999999999987 1110 112233457889999999
Q ss_pred EccCCCeEEEEcCCceEEEEEccCC------------------eeeEEec-CCCCeeeeEecC
Q psy11036 196 LASGGKRLISASLDHHAKIYEMVNF------------------SPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 196 ~s~~~~~l~s~s~d~~i~iwd~~~~------------------~~~~~~~-~~~~v~~~~~sp 239 (239)
|+|++++|++|+.|+.|++|+.... +.+.... +...|.+++|+|
T Consensus 149 ~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 211 (371)
T d1k8kc_ 149 WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 211 (371)
T ss_dssp ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred ccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec
Confidence 9999999999999999999998543 2344444 677899999987
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.7e-29 Score=192.00 Aligned_cols=205 Identities=16% Similarity=0.166 Sum_probs=162.6
Q ss_pred CEEEEeeCCCc--ceeeeeeCCceeeccceeeccCCCCCeEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCceee----
Q psy11036 8 LIVALWDIPSE--AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV-SSDIVISGSYDKTVNVYDTRSPDPVMS---- 80 (239)
Q Consensus 8 g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~v~vw~~~~~~~~~~---- 80 (239)
..|+.|+.... .....+.+|.. ..|++++|+|. ++.+|++|+.||+|++||+..++....
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~gh~~-------------~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~ 106 (325)
T d1pgua1 40 AFVRCLDDGDSKVPPVVQFTGHGS-------------SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN 106 (325)
T ss_dssp EEEEECCSSCCSSCSEEEECTTTT-------------SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE
T ss_pred EEEEEEeCCCCCccceEEEeCCCC-------------CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecc
Confidence 34566665433 34556677631 67999999984 467999999999999999876543322
Q ss_pred ----e-cCCCCEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCE-EEEEecCCeEE
Q psy11036 81 ----V-NHGSPVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR-LISASLDHHAK 151 (239)
Q Consensus 81 ----~-~~~~~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d~~i~ 151 (239)
+ .+.++|.+++|+++++.+++++ ++.+.+|+.+ .++.+..+.+|...|.+++|+|++.+ +++++.|+.++
T Consensus 107 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~ 185 (325)
T d1pgua1 107 VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 185 (325)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEE
T ss_pred cccccccccCcEEEEEECCCCCccceeeccccceEEEEeec-ccccceeeeecccccccccccccccceEEEeecccccc
Confidence 1 3778999999999999988765 4779999998 78888999999999999999998865 67899999999
Q ss_pred EEEcc-cceEeee--------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEc---cCCC
Q psy11036 152 IYEMT-LKTVSSF--------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA---SGGK 201 (239)
Q Consensus 152 i~d~~-~~~~~~~--------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s---~~~~ 201 (239)
+||.+ .+..... ..++.|++||+++ .+.+..+.+|..++..+.|+ |+++
T Consensus 186 ~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~~~~~v~~~~~s~~~~dg~ 264 (325)
T d1pgua1 186 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWLDSQ 264 (325)
T ss_dssp EEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEESSSS
T ss_pred cccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc-ccccccccccccccccceeeeeccCCC
Confidence 99976 2222211 2345599999886 67788888888887766666 7899
Q ss_pred eEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 202 RLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 202 ~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
+|++++.|+.|+|||+++++++..+.
T Consensus 265 ~l~s~s~D~~i~iwd~~~~~~~~~~~ 290 (325)
T d1pgua1 265 KFATVGADATIRVWDVTTSKCVQKWT 290 (325)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEEE
Confidence 99999999999999999999999887
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=2.8e-29 Score=188.12 Aligned_cols=199 Identities=18% Similarity=0.223 Sum_probs=152.9
Q ss_pred CCCCEEEEeeCCCcceeeeee-CCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce-----
Q psy11036 5 LPILIVALWDIPSEAQVSTFT-NHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV----- 78 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~----- 78 (239)
+.||.|++||+++++.++.+. .|. ..|++++|+| +++ +++++.|+.+++|+.......
T Consensus 31 s~Dg~v~vWd~~~~~~~~~~~~~h~--------------~~v~~v~~~~-~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~ 94 (299)
T d1nr0a2 31 DAEGHINSWDISTGISNRVFPDVHA--------------TMITGIKTTS-KGD-LFTVSWDDHLKVVPAGGSGVDSSKAV 94 (299)
T ss_dssp ETTSCEEEEETTTCCEEECSSCSCS--------------SCEEEEEECT-TSC-EEEEETTTEEEEECSSSSSSCTTSCC
T ss_pred cCCCeEEEEECCCCcEEEEEcCCCC--------------CcEEEEEeec-cce-eecccceeeEEEeccCCccccccccc
Confidence 578999999999999888874 577 8999999999 665 456678999999986532100
Q ss_pred ------------------------------------eeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE-E
Q psy11036 79 ------------------------------------MSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL-H 120 (239)
Q Consensus 79 ------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~-~ 120 (239)
........+.+++|+|+++++++++ ++.|++||++ ..+.. .
T Consensus 95 ~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~-~~~~~~~ 173 (299)
T d1nr0a2 95 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLS-GASVSEV 173 (299)
T ss_dssp EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEE-TTEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 0001234567788999999999887 7999999998 44433 3
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccC
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASG 199 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~ 199 (239)
....|...|++++|+|++++|++++.|+.|++||+. ...... ...+.+|...|.+++|+|+
T Consensus 174 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~------------------~~~~~~h~~~v~~l~~s~~ 235 (299)
T d1nr0a2 174 KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH------------------TNSWTFHTAKVACVSWSPD 235 (299)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC------------------CCCCCCCSSCEEEEEECTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc------------------ccccccccccccccccccc
Confidence 445789999999999999999999999999999987 222111 1234678999999999999
Q ss_pred CCeEEEEcCCceEEEEEccCCeeeEEe--c--CCCCeeeeEec
Q psy11036 200 GKRLISASLDHHAKIYEMVNFSPVHTL--D--YPSPVLSIDVS 238 (239)
Q Consensus 200 ~~~l~s~s~d~~i~iwd~~~~~~~~~~--~--~~~~v~~~~~s 238 (239)
+++|++|+.||.|++||+++++....+ . +...+.+++|.
T Consensus 236 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 278 (299)
T d1nr0a2 236 NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 278 (299)
T ss_dssp SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE
T ss_pred ccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC
Confidence 999999999999999999876543322 2 34467777664
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.5e-30 Score=200.65 Aligned_cols=216 Identities=16% Similarity=0.114 Sum_probs=153.2
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCC----CCEEEEeeCCCeEEEEeCCCCCc--
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVS----SDIVISGSYDKTVNVYDTRSPDP-- 77 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~s~~~dg~v~vw~~~~~~~-- 77 (239)
.+.||.|++|++........+..+. .........+..+..++|.+.. +.++++++.||++++|++.....
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~ 160 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEK----LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEE----ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EeCCCcEEEEEccCCCceeeeeccc----cceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence 3568999999976543322221111 0001111122567888888732 36789999999999999753210
Q ss_pred ---------e----eee----cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEE------eccCCceEEEE
Q psy11036 78 ---------V----MSV----NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKF------TCHHKTVTSLC 133 (239)
Q Consensus 78 ---------~----~~~----~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~------~~~~~~i~~i~ 133 (239)
. ... .+...+.+++|+|++ ++++++ |+.|++||++ .++.+..+ .+|..+|.+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~-~~~~~~~~~~~~~l~~h~~~V~~l~ 238 (393)
T d1sq9a_ 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS-TLRPLYNFESQHSMINNSNSIRSVK 238 (393)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT-TTEEEEEEECCC---CCCCCEEEEE
T ss_pred ceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeec-ccccccccccccccccccceEEEcc
Confidence 0 011 245568899999987 777887 8999999998 66665544 46889999999
Q ss_pred EcCCCCEEEEEecCC---eEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCC
Q psy11036 134 LASGGKRLISASLDH---HAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD 209 (239)
Q Consensus 134 ~~~~~~~l~~~~~d~---~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d 209 (239)
|+|+|++|++|+.|+ .|++||++ ++.+..+.... ........+.+|...|++++|+|++++|+|+|.|
T Consensus 239 ~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~--------~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D 310 (393)
T d1sq9a_ 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT--------HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310 (393)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC----------------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred cccccceeeeecCCCCcceeeecccccceeeeeecccc--------ccccceeeeecccCceeeeccCCCCCeeEEECCC
Confidence 999999999999987 48999998 66555552111 1123344456899999999999999999999999
Q ss_pred ceEEEEEccCCeeeEEec-CCCCee
Q psy11036 210 HHAKIYEMVNFSPVHTLD-YPSPVL 233 (239)
Q Consensus 210 ~~i~iwd~~~~~~~~~~~-~~~~v~ 233 (239)
++|++||+++++++.++. |.+.|.
T Consensus 311 ~~v~vWd~~~g~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 311 GKLRFWDVKTKERITTLNMHCDDIE 335 (393)
T ss_dssp SEEEEEETTTTEEEEEEECCGGGCS
T ss_pred CEEEEEECCCCCEEEEECCcCCccc
Confidence 999999999999999998 665554
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.8e-29 Score=189.93 Aligned_cols=204 Identities=15% Similarity=0.155 Sum_probs=135.2
Q ss_pred ceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee----ecCCCCEEEEEEec
Q psy11036 19 AQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS----VNHGSPVESVLCLP 94 (239)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~----~~~~~~v~~~~~~~ 94 (239)
+.++..++|+ +.|++|+|+| ++++|++|+.||+|++||+.++..... +.|..+|.+++|+|
T Consensus 2 ~~v~~~~~h~--------------d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~ 66 (342)
T d1yfqa_ 2 QIVQIEQAPK--------------DYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66 (342)
T ss_dssp EEEECSSCCS--------------SCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE
T ss_pred CeEEcCCCCC--------------CCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeC
Confidence 4455666777 9999999999 799999999999999999977654332 36999999999998
Q ss_pred CC-cEEEEeC-CCcEEEEEccCCCeEEEEEecc-CCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cc----eEee----
Q psy11036 95 SG-GIFVTGG-GLDVCIWDMLGGGKLLHKFTCH-HKTVTSLCLASGGKRLISASLDHHAKIYEMT-LK----TVSS---- 162 (239)
Q Consensus 95 ~~-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~----~~~~---- 162 (239)
++ .++++++ |+.|++|++.. .........+ ........+.++...+++++.++.+++||++ .. ....
T Consensus 67 ~~~~~l~sg~~d~~v~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~ 145 (342)
T d1yfqa_ 67 NTDLQIYVGTVQGEILKVDLIG-SPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp SSSEEEEEEETTSCEEEECSSS-SSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred CCCCEEEEcccccceeeeeccc-ccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccc
Confidence 65 5677776 89999999983 3333333222 2233333444455566666666666666553 10 0000
Q ss_pred --------------------eecceeEEEEEc----------------------------------------------cC
Q psy11036 163 --------------------FTGGLDVCIWDM----------------------------------------------LG 176 (239)
Q Consensus 163 --------------------~~~~~~i~~~d~----------------------------------------------~~ 176 (239)
...++.+++||+ ..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~ 225 (342)
T d1yfqa_ 146 NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp SSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred cccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecC
Confidence 011222444443 22
Q ss_pred CCE--------EEE------EEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCCeeeeEec
Q psy11036 177 GGK--------LLH------KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVS 238 (239)
Q Consensus 177 ~~~--------~~~------~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s 238 (239)
... ... ....|...|.+++|+|++++|+||+.||.|++||+++++.+.++........++|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s 301 (342)
T d1yfqa_ 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301 (342)
T ss_dssp TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred CcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 110 000 01235567899999999999999999999999999999999988744444444443
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.9e-27 Score=180.13 Aligned_cols=214 Identities=24% Similarity=0.359 Sum_probs=161.1
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 82 (239)
+.+.||.|+|||+.++++++++.+|. +.|.+++|+| ++|++|+.|+.+++|+...........
T Consensus 32 sgs~Dg~i~vWd~~~~~~~~~~~~h~--------------~~V~~v~~~~---~~l~s~s~D~~~~~~~~~~~~~~~~~~ 94 (342)
T d2ovrb2 32 SGSDDNTLKVWSAVTGKCLRTLVGHT--------------GGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLY 94 (342)
T ss_dssp EEETTSCEEEEETTTCCEEEECCCCS--------------SCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEeCCCeEEEEECCCCCEEEEEeCCC--------------CCEEEEEeCC---Cccccceecccccccccccccceeccc
Confidence 34679999999999999999999999 9999999987 499999999999999987654322221
Q ss_pred -CCCCEE--------------------------------------EEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEE
Q psy11036 83 -HGSPVE--------------------------------------SVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKF 122 (239)
Q Consensus 83 -~~~~v~--------------------------------------~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~ 122 (239)
....+. .....+....++.++ ++.+++||.+ ....+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~~~ 173 (342)
T d2ovrb2 95 GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE-TETCLHTL 173 (342)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG-GTEEEEEE
T ss_pred ccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecc-cceeeEEE
Confidence 111111 112223334445555 7999999998 77888888
Q ss_pred eccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee--------------------ecceeEEEEEccCCCEEE
Q psy11036 123 TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF--------------------TGGLDVCIWDMLGGGKLL 181 (239)
Q Consensus 123 ~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~--------------------~~~~~i~~~d~~~~~~~~ 181 (239)
.+|...+..+.+ ++.++++++.||.|++||++ .+.+..+ ..++.+++||.... +..
T Consensus 174 ~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~ 250 (342)
T d2ovrb2 174 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG-QCL 250 (342)
T ss_dssp CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC-CEE
T ss_pred cCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccc-ccc
Confidence 888877766555 78899999999999999998 5555544 23456999998874 444
Q ss_pred EEEec---ccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec------CCCCeeeeEecC
Q psy11036 182 HKFTC---HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD------YPSPVLSIDVSM 239 (239)
Q Consensus 182 ~~~~~---h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~sp 239 (239)
..+.. |...+.++.++ ++++++|+.||.|++||+++++.++++. +.+.|++++|+|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~ 315 (342)
T d2ovrb2 251 QTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 315 (342)
T ss_dssp EEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred ccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC
Confidence 44443 45566666664 6799999999999999999999988874 456799999987
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.96 E-value=5e-28 Score=185.20 Aligned_cols=204 Identities=12% Similarity=0.081 Sum_probs=152.0
Q ss_pred CCC-CC------CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCC--eEEEEe
Q psy11036 1 MSH-DL------PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDK--TVNVYD 71 (239)
Q Consensus 1 fs~-~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~v~vw~ 71 (239)
||| || .+|.|++||+++++.++. .|. ..|.+++|+| ++++|++++.+. .|++||
T Consensus 10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~--~~~--------------~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d 72 (360)
T d1k32a3 10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEP--------------LRIRYVRRGG-DTKVAFIHGTREGDFLGIYD 72 (360)
T ss_dssp EEECGGGCEEEEETTEEEEECTTSSBEEEC--SCC--------------SCEEEEEECS-SSEEEEEEEETTEEEEEEEE
T ss_pred ccCCCCCEEEEEECCeEEEEECCCCcEEEc--cCC--------------CCEEEEEECC-CCCEEEEEEcCCCCEEEEEE
Confidence 666 66 469999999988876653 577 8899999999 788877666543 799999
Q ss_pred CCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEe-----
Q psy11036 72 TRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS----- 145 (239)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----- 145 (239)
+++++......+...+.+++|+|+++++++++ ++.+.+|++. .++....+..|...+.+++|+|+|++|+.+.
T Consensus 73 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~ 151 (360)
T d1k32a3 73 YRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE-TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG 151 (360)
T ss_dssp TTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred CCCCcEEEeeCCCceEEeeeecccccccceecccccccccccc-ccceeeeeecccccccchhhccceeeeeeecccccc
Confidence 99988776668999999999999999999988 7999999998 6666666666666666666666666655432
Q ss_pred -----cCCeEEEEEcccceEeee---------------------------------------------------------
Q psy11036 146 -----LDHHAKIYEMTLKTVSSF--------------------------------------------------------- 163 (239)
Q Consensus 146 -----~d~~i~i~d~~~~~~~~~--------------------------------------------------------- 163 (239)
.++.+++||+.......+
T Consensus 152 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (360)
T d1k32a3 152 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPN 231 (360)
T ss_dssp TTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCC
T ss_pred ceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccc
Confidence 233455555541110000
Q ss_pred ---------------------------------------------------------------ecceeEEEEEccCCCEE
Q psy11036 164 ---------------------------------------------------------------TGGLDVCIWDMLGGGKL 180 (239)
Q Consensus 164 ---------------------------------------------------------------~~~~~i~~~d~~~~~~~ 180 (239)
.....+++||+.+...
T Consensus 232 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~- 310 (360)
T d1k32a3 232 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV- 310 (360)
T ss_dssp GGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE-
T ss_pred cceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE-
Confidence 1133477888766322
Q ss_pred EEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 181 LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 181 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
..|.+.|.+++|||||++|++++.||.|++||+++++...++.
T Consensus 311 ----~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~ 353 (360)
T d1k32a3 311 ----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353 (360)
T ss_dssp ----EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECC
T ss_pred ----EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEE
Confidence 2345569999999999999999999999999999998888776
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4e-27 Score=179.18 Aligned_cols=199 Identities=24% Similarity=0.333 Sum_probs=161.0
Q ss_pred eeeeeCCceeeccceeeccCCCCCe-EEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcE
Q psy11036 21 VSTFTNHTTIYKVPLMLYSTPQDYV-RAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGI 98 (239)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 98 (239)
..+|++|. +.| +|+++ ++++|++|+.||+|++||+.+++++.++ .|..+|.+++|+|++ +
T Consensus 5 ~~tL~GH~--------------~~vitc~~~---~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~ 66 (355)
T d1nexb2 5 RTTLRGHM--------------TSVITCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-I 66 (355)
T ss_dssp EEEEECCS--------------SSCEEEEEE---ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-E
T ss_pred cEEECCcC--------------CCcEEEEEE---CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-E
Confidence 45688887 665 66655 4679999999999999999999999888 699999999999865 6
Q ss_pred EEEeC-CCcEEEEEccCCCeEEEEEeccCC--ceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee-----------
Q psy11036 99 FVTGG-GLDVCIWDMLGGGKLLHKFTCHHK--TVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF----------- 163 (239)
Q Consensus 99 l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~----------- 163 (239)
+++++ |+.|++|+.. ..+.......... ......+.+++..+++++.|+.|++||++ .......
T Consensus 67 l~s~s~D~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 145 (355)
T d1nexb2 67 LVSGSTDRTVRVWDIK-KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 145 (355)
T ss_dssp EEEEETTCCEEEEETT-TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred EEEEeccccccccccc-ccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence 66666 8999999998 5665555543333 44556678899999999999999999987 2211110
Q ss_pred --------------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCce
Q psy11036 164 --------------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHH 211 (239)
Q Consensus 164 --------------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~ 211 (239)
..+..+++||+.+ .+.+....++...+.++.++|++.++++++.|+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 224 (355)
T d1nexb2 146 TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224 (355)
T ss_dssp CTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ccccccceeeeeeeccccccccccccceeeeecccceeeeeeccc-ccceeeeeccccccccccccccceeeecccccce
Confidence 2234588999876 6777788888999999999999999999999999
Q ss_pred EEEEEccCCeeeEEec-CCCCeeeeEecC
Q psy11036 212 AKIYEMVNFSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 212 i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 239 (239)
|++||+++++.+..+. |...|.+++|+|
T Consensus 225 i~i~d~~~~~~~~~~~~h~~~v~~~~~~~ 253 (355)
T d1nexb2 225 IRIWDLENGELMYTLQGHTALVGLLRLSD 253 (355)
T ss_dssp EEEEETTTCCEEEEECCCSSCCCEEEECS
T ss_pred EEeeecccccccccccccccccccccccc
Confidence 9999999999999988 788999999875
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=8.7e-28 Score=182.46 Aligned_cols=178 Identities=19% Similarity=0.245 Sum_probs=145.2
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee---
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--- 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--- 81 (239)
+.++.+++|+.++++.+..+.+|. ..|.+++|+|.+..++++++.|+.+++|+..+.+....+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~h~--------------~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~ 201 (325)
T d1pgua1 136 GRDNFGVFISWDSGNSLGEVSGHS--------------QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH 201 (325)
T ss_dssp CSSCSEEEEETTTCCEEEECCSCS--------------SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS
T ss_pred cccceEEEEeecccccceeeeecc--------------cccccccccccccceEEEeecccccccccccccccceecccc
Confidence 456789999999999999999998 999999999955567889999999999999887765554
Q ss_pred -cCCCCEEEEEEecC-CcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEc---CCCCEEEEEecCCeEEEEEc
Q psy11036 82 -NHGSPVESVLCLPS-GGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA---SGGKRLISASLDHHAKIYEM 155 (239)
Q Consensus 82 -~~~~~v~~~~~~~~-~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~---~~~~~l~~~~~d~~i~i~d~ 155 (239)
.+...|.+++|+|+ +.++++++ |+.|++||++ .++.+..+.+|..++..+.|+ |++++|++++.|+.|+|||+
T Consensus 202 ~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~-~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~ 280 (325)
T d1pgua1 202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK-SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 280 (325)
T ss_dssp SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT-TCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred cCCCCccEEeeeccccceeccccccccceeeeeec-cccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEEC
Confidence 36778999999996 67888777 8999999998 888889999888887766665 78999999999999999999
Q ss_pred ccceEeeeecceeEEEEEccCCCEEEEEEecccCc--EEEEEEcc-CCCeEEEEcCCceEEEEEc
Q psy11036 156 TLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKT--VTSLCLAS-GGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 156 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~--v~~~~~s~-~~~~l~s~s~d~~i~iwd~ 217 (239)
+ .++++..+..|... +..+++.+ .+.+|++++.||.|++||+
T Consensus 281 ~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 281 T--------------------TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp T--------------------TTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred C--------------------CCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 8 45555555554433 34444443 2357899999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=8.9e-28 Score=186.91 Aligned_cols=139 Identities=17% Similarity=0.339 Sum_probs=112.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-------cCCCCEEEEEEecCCcEEEEeC-CC---cEEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-------NHGSPVESVLCLPSGGIFVTGG-GL---DVCIWD 111 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~-~~---~i~~~d 111 (239)
..+.+++|+| ++ +|++|+.|++|++||+.+++++..+ .|..+|.+++|+|++++|++++ |+ .|++||
T Consensus 185 ~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd 262 (393)
T d1sq9a_ 185 QFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE 262 (393)
T ss_dssp CCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred CcEEEEEECC-CC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecc
Confidence 6689999999 54 8999999999999999998876544 3788999999999999999998 54 499999
Q ss_pred ccCCCeEEEEEe-------------ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCC
Q psy11036 112 MLGGGKLLHKFT-------------CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178 (239)
Q Consensus 112 ~~~~~~~~~~~~-------------~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~ 178 (239)
++ .++.+..+. +|...|++++|+|++++|++++.|++|++||++ .+
T Consensus 263 ~~-~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~--------------------~g 321 (393)
T d1sq9a_ 263 TE-FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK--------------------TK 321 (393)
T ss_dssp TT-TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT--------------------TT
T ss_pred cc-cceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC--------------------CC
Confidence 98 666666653 799999999999999999999999999999998 45
Q ss_pred EEEEEEecccCcEE----EEEEccCCCeEE
Q psy11036 179 KLLHKFTCHHKTVT----SLCLASGGKRLI 204 (239)
Q Consensus 179 ~~~~~~~~h~~~v~----~~~~s~~~~~l~ 204 (239)
+++..+.+|...|. .++|+|++..++
T Consensus 322 ~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 322 ERITTLNMHCDDIEIEEDILAVDEHGDSLA 351 (393)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred CEEEEECCcCCcccCCccEEEECCCCCEEE
Confidence 55566666655543 244555554444
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.1e-26 Score=168.12 Aligned_cols=213 Identities=22% Similarity=0.338 Sum_probs=165.6
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecC
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNH 83 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 83 (239)
.+.||.|+|||+++++++.++++|. +.|++++| ++++|++|+.|+.+++|++..+........
T Consensus 31 gs~Dg~i~vWd~~~~~~~~~l~~H~--------------~~V~~v~~---~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~ 93 (293)
T d1p22a2 31 GLRDNTIKIWDKNTLECKRILTGHT--------------GSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLIH 93 (293)
T ss_dssp EESSSCEEEEESSSCCEEEEECCCS--------------SCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEECC
T ss_pred EeCCCeEEEEECCCCcEEEEEecCC--------------CCEeeeec---ccceeecccccccccccccccccccccccc
Confidence 4679999999999999999999999 99999987 457999999999999999999887776644
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCC--eEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cce
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGG--KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKT 159 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 159 (239)
....... +.+....++++. ++.+.+|+..... .....+..|...+..+.+.+ ..+++++.|+.+++||++ .+.
T Consensus 94 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~ 170 (293)
T d1p22a2 94 HCEAVLH-LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEF 170 (293)
T ss_dssp CCSCEEE-EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCE
T ss_pred ccccccc-ccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcE
Confidence 3333333 334444555554 8999999997433 24455667888888877754 578899999999999998 555
Q ss_pred Eeee--------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccC
Q psy11036 160 VSSF--------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219 (239)
Q Consensus 160 ~~~~--------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 219 (239)
+..+ ..++.+++||+++ ...+....+|...+.. +++++.+|++++.||.|++||+.+
T Consensus 171 ~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~ 247 (293)
T d1p22a2 171 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVA 247 (293)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHH
T ss_pred EEEEcccccccccccCCCCeEEEecCCCEEEEEeccc-ceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCC
Confidence 5444 2345599999987 6667778888888765 556788999999999999999753
Q ss_pred ---------CeeeEEec-CCCCeeeeEecC
Q psy11036 220 ---------FSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 220 ---------~~~~~~~~-~~~~v~~~~~sp 239 (239)
..++..+. |.++|++++|+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~ 277 (293)
T d1p22a2 248 ALDPRAPAGTLCLRTLVEHSGRVFRLQFDE 277 (293)
T ss_dssp HTSTTSCTTTTEEEEECCCSSCCCCEEECS
T ss_pred CccccccCCceeeEEecCCCCCEEEEEEcC
Confidence 34566666 888999999875
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=7e-25 Score=165.79 Aligned_cols=203 Identities=22% Similarity=0.349 Sum_probs=151.5
Q ss_pred eeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEE
Q psy11036 13 WDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVL 91 (239)
Q Consensus 13 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~ 91 (239)
|+..+.++.+.+++|. +.|.+ ++++ ++++|+||+.||+|++||+.+++++..+ .|...|.+++
T Consensus 1 W~~~~~~~~~~l~GH~--------------~~V~s-~~~~-~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~ 64 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHD--------------DHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 64 (342)
T ss_dssp HHHSCCCCCEEEECST--------------TSCEE-EEEE-ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEE
T ss_pred CCCCCCCcCEEECCcC--------------CceEE-EEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEE
Confidence 6666778888999998 88865 3666 6789999999999999999999999888 6999999999
Q ss_pred EecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeee------
Q psy11036 92 CLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSF------ 163 (239)
Q Consensus 92 ~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~------ 163 (239)
|+|+ ++++++ |+.+++|+.. ..........+...+...... ...+..+..|+.+.+|+.. .+....+
T Consensus 65 ~~~~--~l~s~s~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 139 (342)
T d2ovrb2 65 MRDN--IIISGSTDRTLKVWNAE-TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA 139 (342)
T ss_dssp EETT--EEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred eCCC--ccccceecccccccccc-cccceecccccceeEeeeecc--cccccccccceeEEEeecccccceeeeeccccc
Confidence 9974 777777 8999999998 555555555555555555443 4567777788888888876 3332222
Q ss_pred --------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-C
Q psy11036 164 --------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-Y 228 (239)
Q Consensus 164 --------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~ 228 (239)
..++.+++||... ...+..+.+|...+..+ ++++.+|++++.||.|++||++.++++..+. +
T Consensus 140 ~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~ 216 (342)
T d2ovrb2 140 VRCVQYDGRRVVSGAYDFMVKVWDPET-ETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 216 (342)
T ss_dssp EEEEEECSSCEEEEETTSCEEEEEGGG-TEEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred ceeeccccceeeeecCCCeEEEeeccc-ceeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeEeccc
Confidence 2344577888765 56667777776665544 3457788888888888888888888877776 6
Q ss_pred CCCeeeeEecC
Q psy11036 229 PSPVLSIDVSM 239 (239)
Q Consensus 229 ~~~v~~~~~sp 239 (239)
...+.+++++|
T Consensus 217 ~~~v~~~~~~~ 227 (342)
T d2ovrb2 217 QSLTSGMELKD 227 (342)
T ss_dssp CSCEEEEEEET
T ss_pred ccceeEEecCC
Confidence 66777777654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.7e-26 Score=171.97 Aligned_cols=193 Identities=13% Similarity=0.156 Sum_probs=142.1
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC--------
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS-------- 74 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~-------- 74 (239)
+.+.||+|++||+.++. ..|. ..|.++++++ + ..+++++.|+++++|++..
T Consensus 26 sgs~Dg~v~~Wd~~~~~-----~~h~--------------~~V~~~~~~~-~-~~~~s~s~D~~v~~w~~~~~~~~~~~~ 84 (287)
T d1pgua2 26 SGSYDGRIMEWSSSSMH-----QDHS--------------NLIVSLDNSK-A-QEYSSISWDDTLKVNGITKHEFGSQPK 84 (287)
T ss_dssp EEETTSCEEETTTTEEE-----CCCC--------------SCEEEEECCS-T-TCCEEEETTTEEEETTEEEEECSSCEE
T ss_pred EEeCCCeEEEEECCCCC-----CCCC--------------CCEEEEEecC-C-CeEEEEeecccccccccccccccccee
Confidence 45789999999987543 4676 7788888776 3 4567778888888876542
Q ss_pred --------------------------CCceeeecCCCCEEEEEEecCCcEEEEeC-C-CcEEEEEccCCCeEEEEE-ecc
Q psy11036 75 --------------------------PDPVMSVNHGSPVESVLCLPSGGIFVTGG-G-LDVCIWDMLGGGKLLHKF-TCH 125 (239)
Q Consensus 75 --------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-~~i~~~d~~~~~~~~~~~-~~~ 125 (239)
++.+..+....+ ..++++++..+++++ + +.+++|++. ..+....+ ..|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~-~~~~~~~~~~~~ 161 (287)
T d1pgua2 85 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLS-DLEVSFDLKTPL 161 (287)
T ss_dssp EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSC--EEEEEECSSEEEEEETTTSCEEEEETT-EEEEEEECSSCC
T ss_pred eeeeccCCceEEEeecccceeeeccceeeeeeccccce--eeeeeccCcceeeeccccceeeeeecc-ccceeeeeeecc
Confidence 222222222222 245567777777776 4 679999987 44433333 357
Q ss_pred CCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEE-EEEEecccCcEEEEEEccC-----
Q psy11036 126 HKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKL-LHKFTCHHKTVTSLCLASG----- 199 (239)
Q Consensus 126 ~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~h~~~v~~~~~s~~----- 199 (239)
..++++++|+|++.+|++++.||.|++||+. ..+. ...+.+|...|.+++|+|+
T Consensus 162 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~--------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 221 (287)
T d1pgua2 162 RAKPSYISISPSETYIAAGDVMGKILLYDLQ--------------------SREVKTSRWAFRTSKINAISWKPAEKGAN 221 (287)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETT--------------------TTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred CCceeEEEeccCccccccccccccccceeec--------------------ccccccccccccccccceeeecccccccc
Confidence 7899999999999999999999999999987 2222 2234678999999999874
Q ss_pred -----CCeEEEEcCCceEEEEEccC-CeeeEEec-CCCCeeeeEecC
Q psy11036 200 -----GKRLISASLDHHAKIYEMVN-FSPVHTLD-YPSPVLSIDVSM 239 (239)
Q Consensus 200 -----~~~l~s~s~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~~sp 239 (239)
+.+|++|+.|+.|++||+++ ++.+..+. |.+.|++++|+|
T Consensus 222 ~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~ 268 (287)
T d1pgua2 222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 268 (287)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE
T ss_pred cccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC
Confidence 46899999999999999977 45566665 889999999986
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.95 E-value=3e-24 Score=160.19 Aligned_cols=208 Identities=14% Similarity=0.198 Sum_probs=163.0
Q ss_pred CCCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEE-EEeeCCCeEEEEeCCCCCceee
Q psy11036 2 SHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIV-ISGSYDKTVNVYDTRSPDPVMS 80 (239)
Q Consensus 2 s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~~~~~~ 80 (239)
.+++.+++|.+||+++++.+++++.. ..+..++|+| ++++| ++++.++.|++||+.+++.+..
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g---------------~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~~~~~ 69 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG---------------SNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIAT 69 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS---------------SSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC---------------CCceEEEEeC-CCCEEEEEECCCCEEEEEECCCCceeee
Confidence 35678899999999999999999876 4578999999 67765 6777899999999999999888
Q ss_pred ecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEE-EEecCCeEEEEEcc-
Q psy11036 81 VNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLI-SASLDHHAKIYEMT- 156 (239)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~i~d~~- 156 (239)
+.....+..+++++++..+++++ ++.+.+|+.. .++....+..+ ....++.++|+++.++ ++..++.+.+|+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~ 147 (301)
T d1l0qa2 70 VPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT-SNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147 (301)
T ss_dssp EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred eeccccccccccccccccccccccccceeeecccc-cceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccc
Confidence 86666789999999998777665 5789999998 77777777644 4567888999988765 45557788888876
Q ss_pred cceEeee------------------------------------------------------------------ecceeEE
Q psy11036 157 LKTVSSF------------------------------------------------------------------TGGLDVC 170 (239)
Q Consensus 157 ~~~~~~~------------------------------------------------------------------~~~~~i~ 170 (239)
...+..+ .....+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~ 227 (301)
T d1l0qa2 148 KAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (301)
T ss_dssp TEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred cceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeee
Confidence 3322221 0123488
Q ss_pred EEEccCCCEEEEEEecccCcEEEEEEccCCCeE-EEEcCCceEEEEEccCCeeeEEecCC
Q psy11036 171 IWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL-ISASLDHHAKIYEMVNFSPVHTLDYP 229 (239)
Q Consensus 171 ~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~ 229 (239)
+||..+ .+.+..+.. ...+.+++|+|||++| ++++.|+.|++||+++++.+.+++..
T Consensus 228 v~D~~t-~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg 285 (301)
T d1l0qa2 228 MIDTGT-NKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVG 285 (301)
T ss_dssp EEETTT-TEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred eeecCC-CeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCC
Confidence 999876 566666654 3568999999999976 67788999999999999999998743
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.8e-25 Score=166.29 Aligned_cols=148 Identities=16% Similarity=0.267 Sum_probs=120.2
Q ss_pred EEEecCCCCEEEEeeCC-CeEEEEeCCCCCceeee--cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE-EEE
Q psy11036 48 GTVSPVSSDIVISGSYD-KTVNVYDTRSPDPVMSV--NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL-HKF 122 (239)
Q Consensus 48 ~~~~~~~~~~l~s~~~d-g~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~-~~~ 122 (239)
.++++ +++.+++++.+ +.+++|++...+....+ .+..++++++|+|++.+|++++ +|.|++||+. .++.. ..+
T Consensus 124 ~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~ 201 (287)
T d1pgua2 124 SAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ-SREVKTSRW 201 (287)
T ss_dssp EEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEECCS
T ss_pred eeeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeec-ccccccccc
Confidence 45566 56677777666 47999999766655544 4778899999999999999998 8999999998 55443 456
Q ss_pred eccCCceEEEEEcCC----------CCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEE
Q psy11036 123 TCHHKTVTSLCLASG----------GKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVT 192 (239)
Q Consensus 123 ~~~~~~i~~i~~~~~----------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~ 192 (239)
..|..+|.+++|+|. +.++++|+.|+.|++||++ +..+.+..+.+|...|+
T Consensus 202 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~-------------------~~~~~~~~~~~h~~~V~ 262 (287)
T d1pgua2 202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK-------------------RPMKIIKALNAHKDGVN 262 (287)
T ss_dssp CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS-------------------CTTCCEEETTSSTTCEE
T ss_pred cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC-------------------CCCeEEEEeCCCCCCeE
Confidence 789999999999875 4689999999999999986 22445556678999999
Q ss_pred EEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 193 SLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 193 ~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
+++|+|++ .|++++.|+.|++|++
T Consensus 263 ~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 263 NLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEEETT-EEEEEETTSCEEEEEE
T ss_pred EEEECCCC-EEEEEECCCeEEEEEE
Confidence 99999986 5889999999999986
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=1.7e-25 Score=175.78 Aligned_cols=218 Identities=11% Similarity=0.054 Sum_probs=159.1
Q ss_pred CCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee--ec
Q psy11036 5 LPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS--VN 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~--~~ 82 (239)
..||.|+|||+.+++.+.+++.+ ..+..++|+| +++++++++.|+++++||+.+++.... +.
T Consensus 39 ~~dg~v~vwD~~t~~~~~~l~~g---------------~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~ 102 (426)
T d1hzua2 39 RDAGQIALVDGDSKKIVKVIDTG---------------YAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 102 (426)
T ss_dssp TTTTEEEEEETTTCSEEEEEECC---------------SSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCEEEEEECCCCcEEEEEeCC---------------CCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEe
Confidence 46899999999999999999988 4589999999 899999999999999999998875443 32
Q ss_pred ----CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEecc-------------------------------
Q psy11036 83 ----HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCH------------------------------- 125 (239)
Q Consensus 83 ----~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~------------------------------- 125 (239)
|...+.+++|+|+|+++++++ ++.+.+||.. ..........|
T Consensus 103 ~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~ 181 (426)
T d1hzua2 103 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 181 (426)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCC-ccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEec
Confidence 334455666778999887766 6999999987 44444333211
Q ss_pred ------------------------CCceEEEEEcCCCCEEEEEe-cCCeEEEEEcc-cceEeee----------------
Q psy11036 126 ------------------------HKTVTSLCLASGGKRLISAS-LDHHAKIYEMT-LKTVSSF---------------- 163 (239)
Q Consensus 126 ------------------------~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~---------------- 163 (239)
...+..+.|+|++++++++. .+..+.+++.. .+.+...
T Consensus 182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (426)
T d1hzua2 182 KETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH 261 (426)
T ss_dssp TTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEE
T ss_pred CCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeec
Confidence 11234566777776655554 34556677666 3333222
Q ss_pred -----------ecceeEEEEEccCC------CEEEEEEecccCcEEEEEEccCCCeEEE-------EcCCceEEEEEccC
Q psy11036 164 -----------TGGLDVCIWDMLGG------GKLLHKFTCHHKTVTSLCLASGGKRLIS-------ASLDHHAKIYEMVN 219 (239)
Q Consensus 164 -----------~~~~~i~~~d~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s-------~s~d~~i~iwd~~~ 219 (239)
.+++.+.+|+.... .+....+.+|...+..++|+||+++|++ ++.|++|+|||+++
T Consensus 262 ~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t 341 (426)
T d1hzua2 262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 341 (426)
T ss_dssp TTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred CCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCC
Confidence 12344666665432 3567788999999999999999999994 55688999999999
Q ss_pred CeeeEEe----------cCCCCeeeeEecC
Q psy11036 220 FSPVHTL----------DYPSPVLSIDVSM 239 (239)
Q Consensus 220 ~~~~~~~----------~~~~~v~~~~~sp 239 (239)
++...++ .+...|.+++|||
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp 371 (426)
T d1hzua2 342 LDAKYQVLPIAEWADLGEGAKRVVQPEYNK 371 (426)
T ss_dssp TTSCCEEECHHHHHCCCSSCCCEEEEEECS
T ss_pred CCcCeEEeccchhcccCCCCccEEEEEECC
Confidence 9877654 2455688999997
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=6.2e-23 Score=151.72 Aligned_cols=184 Identities=17% Similarity=0.320 Sum_probs=146.1
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
..|+|++| ++++|++|+.||+|++||+.+++++..+ .|..+|.+++| ++++|++++ |+.|++|++. .+....
T Consensus 16 ~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~-~~~~~~ 89 (293)
T d1p22a2 16 KGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN-TGEMLN 89 (293)
T ss_dssp CCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS-SCCEEE
T ss_pred CCEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccc-cccccc
Confidence 88998765 5789999999999999999999999988 69999999887 577898888 8999999998 555555
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cce---Eee--------------------eecceeEEEEEccC
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKT---VSS--------------------FTGGLDVCIWDMLG 176 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~---~~~--------------------~~~~~~i~~~d~~~ 176 (239)
....+.... ..+.+....++++..++.+.+|+.. ... ... ..+++.+++||.++
T Consensus 90 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~ 167 (293)
T d1p22a2 90 TLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST 167 (293)
T ss_dssp EECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTT
T ss_pred ccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCC
Confidence 555444433 3455667789999999999999987 211 111 13566799999987
Q ss_pred CCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCeeeeEe
Q psy11036 177 GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVLSIDV 237 (239)
Q Consensus 177 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 237 (239)
.+++..+.+|...+..+.++ +.++++++.||.|++||+++.+.+.... +...+..+.+
T Consensus 168 -~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 226 (293)
T d1p22a2 168 -CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 226 (293)
T ss_dssp -CCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred -CcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeeccc
Confidence 67788888999998887775 5689999999999999999999988887 5556655543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=5.1e-22 Score=150.00 Aligned_cols=218 Identities=13% Similarity=0.093 Sum_probs=171.1
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEE-EEeeCCCeEEEEeCCCCCceeee
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIV-ISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
+.+.|++|+|||+++++.+.+++.+... ..+.+++|+| +++++ ++++.++.|.+||+.+++.+..+
T Consensus 6 t~~~d~~v~v~D~~s~~~~~~i~~~~~~------------~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~ 72 (337)
T d1pbyb_ 6 APARPDKLVVIDTEKMAVDKVITIADAG------------PTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRI 72 (337)
T ss_dssp EEETTTEEEEEETTTTEEEEEEECTTCT------------TCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEcCCCEEEEEECCCCeEEEEEECCCCC------------CCccEEEECC-CCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 3467899999999999999988765310 4577999999 67765 67778999999999999988776
Q ss_pred cC------CCCEEEEEEecCCcEEEEeC-------------CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEE
Q psy11036 82 NH------GSPVESVLCLPSGGIFVTGG-------------GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLI 142 (239)
Q Consensus 82 ~~------~~~v~~~~~~~~~~~l~~~~-------------~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 142 (239)
.. ...+..++++|+++.++++. +..+.+||.. .++....+.. ...+..++|+|+|++++
T Consensus 73 ~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~-~~~~~~~~~s~dg~~l~ 150 (337)
T d1pbyb_ 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSRRKAFEA-PRQITMLAWARDGSKLY 150 (337)
T ss_dssp ECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEEEEEEEC-CSSCCCEEECTTSSCEE
T ss_pred ecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeecccc-CCeEEEeccc-cCCceEEEEcCCCCEEE
Confidence 32 12345789999999988774 3568889998 7777777764 45678899999999999
Q ss_pred EEecCCeEEEEEcc-cceEeee---------------------------------------------ecceeEEEEEccC
Q psy11036 143 SASLDHHAKIYEMT-LKTVSSF---------------------------------------------TGGLDVCIWDMLG 176 (239)
Q Consensus 143 ~~~~d~~i~i~d~~-~~~~~~~---------------------------------------------~~~~~i~~~d~~~ 176 (239)
+++.+ +.+||.. .+....+ .....+.+||..+
T Consensus 151 ~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (337)
T d1pbyb_ 151 GLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp EESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred EEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCC
Confidence 88654 6778887 4433332 1122377888877
Q ss_pred CCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 177 GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 177 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.......+..+...+..+.++|++.+++.+ ++.|++||+.+++.+..+.++..+.+++|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~ 289 (337)
T d1pbyb_ 229 GEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVST 289 (337)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECT
T ss_pred CcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECC
Confidence 666666677788888999999999988766 5899999999999999999989999999987
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.90 E-value=1.4e-22 Score=154.64 Aligned_cols=169 Identities=14% Similarity=0.095 Sum_probs=141.5
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-C--CcEEEEEccCCCeEEEEEe
Q psy11036 47 AGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-G--LDVCIWDMLGGGKLLHKFT 123 (239)
Q Consensus 47 ~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~--~~i~~~d~~~~~~~~~~~~ 123 (239)
.-.|+|.+++++++++ +|.|++||+..+..+ .+.|...|.+++|+|+|+.|++++ + ..|++||.+ .+ ....+.
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~-~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~-~~-~~~~~~ 82 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR-TG-KAEKFE 82 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT-TC-CEEECC
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEE-EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC-CC-cEEEee
Confidence 4569996688888876 479999999877654 457999999999999999998776 3 369999997 44 455677
Q ss_pred ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeE
Q psy11036 124 CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 203 (239)
Q Consensus 124 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 203 (239)
.|...+.+++|+|+|++|++++.++.+++|++. ..+....+..|...+.+++|+|+|++|
T Consensus 83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~spdg~~l 142 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE--------------------TGKPTVIERSREAMITDFTISDNSRFI 142 (360)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETT--------------------TCCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred CCCceEEeeeecccccccceecccccccccccc--------------------ccceeeeeecccccccchhhccceeee
Confidence 899999999999999999999999999999988 455666678888899999999999999
Q ss_pred EEE----------cCCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 204 ISA----------SLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 204 ~s~----------s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
+.+ ..++.+++|++.+++......+...+..++|+|
T Consensus 143 a~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~sp 188 (360)
T d1k32a3 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA 188 (360)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECT
T ss_pred eeeccccccceeeccccceeeeccccCceeeecccccccccccccC
Confidence 854 345679999999998887777888888888886
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=3.3e-23 Score=156.18 Aligned_cols=178 Identities=11% Similarity=0.003 Sum_probs=122.4
Q ss_pred CCCCEEEEeeCCCcceeee---eeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee
Q psy11036 5 LPILIVALWDIPSEAQVST---FTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV 81 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 81 (239)
+.||+|+|||++++..... ...|. ++|.+++|+|+++.+|++|+.|+.|++|++.........
T Consensus 30 s~Dg~v~iwd~~~~~~~~~~~~~~~h~--------------~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~ 95 (342)
T d1yfqa_ 30 SWDGSLTVYKFDIQAKNVDLLQSLRYK--------------HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL 95 (342)
T ss_dssp ETTSEEEEEEEETTTTEEEEEEEEECS--------------SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEEC
T ss_pred ECCCeEEEEEccCCCcceEEEEecCCC--------------CCEEEEEEeCCCCCEEEEcccccceeeeecccccccccc
Confidence 4689999999976654332 33577 899999999966678999999999999998765543322
Q ss_pred c--CCC------------------------------------------------CEEEEEEecCCcEEEEeC-CCcEEEE
Q psy11036 82 N--HGS------------------------------------------------PVESVLCLPSGGIFVTGG-GLDVCIW 110 (239)
Q Consensus 82 ~--~~~------------------------------------------------~v~~~~~~~~~~~l~~~~-~~~i~~~ 110 (239)
. +.. ......+.+.+..+++++ ++.|++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 175 (342)
T d1yfqa_ 96 TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF 175 (342)
T ss_dssp BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEE
T ss_pred cccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEE
Confidence 1 111 111223445555666665 6788888
Q ss_pred EccCCCe-------------------------E---------EEEE--------------------------eccCCceE
Q psy11036 111 DMLGGGK-------------------------L---------LHKF--------------------------TCHHKTVT 130 (239)
Q Consensus 111 d~~~~~~-------------------------~---------~~~~--------------------------~~~~~~i~ 130 (239)
|++.... . +... ..|...++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 255 (342)
T d1yfqa_ 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN 255 (342)
T ss_dssp ESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred ecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccce
Confidence 7642110 0 0000 12344678
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc
Q psy11036 131 SLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH 210 (239)
Q Consensus 131 ~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~ 210 (239)
+++|+|++++|++|+.||.|++||++ .++.+..+..+ ..+..++|+|++++|++++.|+
T Consensus 256 ~l~~sp~~~~lasg~~Dg~v~vWD~~--------------------~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd 314 (342)
T d1yfqa_ 256 SIEFSPRHKFLYTAGSDGIISCWNLQ--------------------TRKKIKNFAKF-NEDSVVKIACSDNILCLATSDD 314 (342)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEETT--------------------TTEEEEECCCC-SSSEEEEEEECSSEEEEEEECT
T ss_pred eEEecCCccEEEEECCCCEEEEEECC--------------------CCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCC
Confidence 99999999999999999999999988 34555554432 3455678899999999999898
Q ss_pred eEEEEEc
Q psy11036 211 HAKIYEM 217 (239)
Q Consensus 211 ~i~iwd~ 217 (239)
.+++|..
T Consensus 315 ~~~~~~~ 321 (342)
T d1yfqa_ 315 TFKTNAA 321 (342)
T ss_dssp HHHHCSS
T ss_pred cEEEeee
Confidence 8888754
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=1.5e-21 Score=153.26 Aligned_cols=187 Identities=12% Similarity=0.011 Sum_probs=139.6
Q ss_pred CCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce--eee
Q psy11036 4 DLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPV--MSV 81 (239)
Q Consensus 4 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~--~~~ 81 (239)
.+.+|.|.|||.++++.+..++.+ ..+..++|+| +++++++++.|+++++||+.+++.. ..+
T Consensus 38 ~~d~g~v~v~D~~t~~v~~~~~~g---------------~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i 101 (432)
T d1qksa2 38 LRDAGQIALIDGSTYEIKTVLDTG---------------YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEI 101 (432)
T ss_dssp ETTTTEEEEEETTTCCEEEEEECS---------------SCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred EcCCCEEEEEECCCCcEEEEEeCC---------------CCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEE
Confidence 356899999999999999999988 4589999999 8999999999999999999887643 333
Q ss_pred c----CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccC-----------CceEEEEEcCCCCEE-EE
Q psy11036 82 N----HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHH-----------KTVTSLCLASGGKRL-IS 143 (239)
Q Consensus 82 ~----~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~-----------~~i~~i~~~~~~~~l-~~ 143 (239)
+ +.+.+.+..|+|||+++++++ ++.+.+||.. +++.+..+..|. .....+.++|++..+ ++
T Consensus 102 ~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs 180 (432)
T d1qksa2 102 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 180 (432)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCc-cccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEE
Confidence 3 333444556678999875544 7999999998 778777766443 345567788877654 44
Q ss_pred EecCCeEEEEEcccceEeeeecceeEEEEEccCCCE-EEEEEecccCcEEEEEEccCCCeEEEEcC-CceEEEEEccCCe
Q psy11036 144 ASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGK-LLHKFTCHHKTVTSLCLASGGKRLISASL-DHHAKIYEMVNFS 221 (239)
Q Consensus 144 ~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-d~~i~iwd~~~~~ 221 (239)
...++.|.+||.. +... .+..+ .+...+..++|+|+|+++++++. ++.+.++|..+++
T Consensus 181 ~~~~~~i~~~d~~-------------------~~~~~~~~~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~ 240 (432)
T d1qksa2 181 VKETGKILLVDYT-------------------DLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 240 (432)
T ss_dssp ETTTTEEEEEETT-------------------CSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred EccCCeEEEEEcc-------------------CCCcceEEEE-cccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence 5556788877766 1111 11222 34556889999999998777664 6689999999998
Q ss_pred eeEEec
Q psy11036 222 PVHTLD 227 (239)
Q Consensus 222 ~~~~~~ 227 (239)
.+..+.
T Consensus 241 ~~~~~~ 246 (432)
T d1qksa2 241 LVAIED 246 (432)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 887765
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=3e-21 Score=146.28 Aligned_cols=205 Identities=10% Similarity=0.063 Sum_probs=138.3
Q ss_pred CCCCEEEEeeCCCcceeeeeeC-CceeeccceeeccCCCCCeEEEEEecCCCCEE-EEeeCCCeEEEEeCCCCCceeeec
Q psy11036 5 LPILIVALWDIPSEAQVSTFTN-HTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIV-ISGSYDKTVNVYDTRSPDPVMSVN 82 (239)
Q Consensus 5 ~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~~~~~~~~ 82 (239)
++++.|.+||+++++.+.+++. +. ..+.+++|+| +++++ +++..++.|++||+.+++.+..+.
T Consensus 15 ~~~~~v~v~D~~t~~~~~t~~~~~~--------------~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~ 79 (346)
T d1jmxb_ 15 NYPNNLHVVDVASDTVYKSCVMPDK--------------FGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 79 (346)
T ss_dssp ETTTEEEEEETTTTEEEEEEECSSC--------------CSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cCCCEEEEEECCCCCEEEEEEcCCC--------------CCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence 4679999999999999998875 34 5678999999 66655 666789999999999998877663
Q ss_pred CC-------CCEEEEEEecCCcEEEEeC-------------CCcEEEEEccCCCeEEEEEe--ccCCceEEEEEcCCCCE
Q psy11036 83 HG-------SPVESVLCLPSGGIFVTGG-------------GLDVCIWDMLGGGKLLHKFT--CHHKTVTSLCLASGGKR 140 (239)
Q Consensus 83 ~~-------~~v~~~~~~~~~~~l~~~~-------------~~~i~~~d~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~ 140 (239)
.. ..+..++++|+|++++++. +..+.+|+.. .++....+. .....+..+.+++++..
T Consensus 80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (346)
T d1jmxb_ 80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA-DGLEAKPVRTFPMPRQVYLMRAADDGSL 158 (346)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG-GGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecc-cceeeeEEEeeeccCceEEEEecCCCEE
Confidence 11 2356789999999887763 4567888876 322211111 11122333444444433
Q ss_pred EEEEecCCeEEEEEcc-cceEeee--------------------------------------------------------
Q psy11036 141 LISASLDHHAKIYEMT-LKTVSSF-------------------------------------------------------- 163 (239)
Q Consensus 141 l~~~~~d~~i~i~d~~-~~~~~~~-------------------------------------------------------- 163 (239)
++++ +.+.+|++. ++.+..+
T Consensus 159 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (346)
T d1jmxb_ 159 YVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 235 (346)
T ss_dssp EEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred EEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence 3321 223333332 1111110
Q ss_pred ---------------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCc
Q psy11036 164 ---------------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH 210 (239)
Q Consensus 164 ---------------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~ 210 (239)
.....+.+||..+ ++.+..+. +...+.+++|+|||++|++++.|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~ 313 (346)
T d1jmxb_ 236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ-RKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFN 313 (346)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTT-TEEEEEEE-CSSCCCEEEECSSSSCEEEESBSS
T ss_pred ECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCC-CcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCC
Confidence 1123478888876 55555554 345688999999999999999999
Q ss_pred eEEEEEccCCeeeEEecCCC
Q psy11036 211 HAKIYEMVNFSPVHTLDYPS 230 (239)
Q Consensus 211 ~i~iwd~~~~~~~~~~~~~~ 230 (239)
.|++||.++++.+.+++.++
T Consensus 314 ~v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 314 DLAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp EEEEEETTTTEEEEEEECSS
T ss_pred cEEEEECccCCEEEEEECCC
Confidence 99999999999999998543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.86 E-value=1e-18 Score=133.93 Aligned_cols=207 Identities=12% Similarity=0.020 Sum_probs=144.5
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee----------CCCeEEEEeCCCCCc
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS----------YDKTVNVYDTRSPDP 77 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~v~vw~~~~~~~ 77 (239)
+.|++||..+++.+.++..+. .+ .++|+| ++++|++++ .++.|.+||..+++.
T Consensus 47 ~~v~v~D~~tg~~~~~~~~~~--------------~~--~~a~Sp-DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~ 109 (373)
T d2madh_ 47 IQQWVLDAGSGSILGHVNGGF--------------LP--NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP 109 (373)
T ss_pred ceEEEEECCCCCEEEEEeCCC--------------Cc--cEEEcC-CCCEEEEEeecCCcccccccceEEEEEECCCCcE
Confidence 679999999999999988775 33 799999 788887764 457899999999998
Q ss_pred eeeec-CCCC-------EEEEEEecCCcEEEEeC---CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCE-EEEEe
Q psy11036 78 VMSVN-HGSP-------VESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR-LISAS 145 (239)
Q Consensus 78 ~~~~~-~~~~-------v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~ 145 (239)
+..+. +... ...+.|+++++.+++.. ++.+.+|+.. ..+.... .....++.++|+++. +++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~s~~g~~~~v~~~ 184 (373)
T d2madh_ 110 IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQG-GSSDDQL----LSSPTCYHIHPGAPSTFYLLC 184 (373)
T ss_pred EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeecc-CCeEEEE----eccceeEEEecCCCcEEEEEc
Confidence 77663 2222 24577888888766554 4678888876 4443332 233456778887754 45677
Q ss_pred cCCeEEEEEcc-cceEeee-------------------------------------------------------------
Q psy11036 146 LDHHAKIYEMT-LKTVSSF------------------------------------------------------------- 163 (239)
Q Consensus 146 ~d~~i~i~d~~-~~~~~~~------------------------------------------------------------- 163 (239)
.|+.+.+|+.. .......
T Consensus 185 ~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (373)
T d2madh_ 185 AQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW 264 (373)
T ss_pred CCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeee
Confidence 78888888765 2211110
Q ss_pred ------------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCe--EEEEcCCce
Q psy11036 164 ------------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR--LISASLDHH 211 (239)
Q Consensus 164 ------------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~--l~s~s~d~~ 211 (239)
.....+.+||..+ ++.+..+. +...+..++|+|||+. +++++.|+.
T Consensus 265 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t-~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~ 342 (373)
T d2madh_ 265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEV 342 (373)
T ss_pred ccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC-CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCe
Confidence 0112255666655 33344433 4567889999999984 468899999
Q ss_pred EEEEEccCCeeeEEec-CCCCeeeeEec
Q psy11036 212 AKIYEMVNFSPVHTLD-YPSPVLSIDVS 238 (239)
Q Consensus 212 i~iwd~~~~~~~~~~~-~~~~v~~~~~s 238 (239)
|++||+.+++.++++. +....+.+++.
T Consensus 343 v~v~D~~tg~~~~~~~~~g~~P~~l~~~ 370 (373)
T d2madh_ 343 LHIYDAGAGDQDQSTVELGSGPQVLSVM 370 (373)
T ss_pred EEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence 9999999999999998 66677777653
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.9e-19 Score=135.81 Aligned_cols=138 Identities=12% Similarity=0.162 Sum_probs=99.2
Q ss_pred CCCCCCEEEEeeCCCcceeeeee--CCceeeccceeeccCCCCCeEEEEEecCCCCEEE-EeeCCCeEEEEeCCCCCcee
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFT--NHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVI-SGSYDKTVNVYDTRSPDPVM 79 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg~v~vw~~~~~~~~~ 79 (239)
+.+.+++|++|++++...+..++ .+. +.+..++|+| ++++|+ ++..|+.|++|++.......
T Consensus 9 ~~~~~~~I~v~~~~~~~~l~~~~~~~~~--------------~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~ 73 (333)
T d1ri6a_ 9 ASPESQQIHVWNLNHEGALTLTQVVDVP--------------GQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGAL 73 (333)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEECS--------------SCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred ECCCCCcEEEEEEcCCCCeEEEEEEcCC--------------CCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence 45678999999997654333232 354 7899999999 777774 55568999999998665433
Q ss_pred ee----cCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEE--EEeccCCceEEEEEcCCCCEEEEEec-CCeE
Q psy11036 80 SV----NHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLH--KFTCHHKTVTSLCLASGGKRLISASL-DHHA 150 (239)
Q Consensus 80 ~~----~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i 150 (239)
.+ .....+..++|+|+|+++++++ ++.+.+|+.. ...... ....+...+.++.++|+++++++++. +..+
T Consensus 74 ~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i 152 (333)
T d1ri6a_ 74 TFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRI 152 (333)
T ss_dssp EEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEE
T ss_pred EEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc-cccceecccccCCCccceEEEeeecceeeecccccccee
Confidence 32 3556677899999999999887 5789999887 333332 33345667788889999988777664 4567
Q ss_pred EEEEcc
Q psy11036 151 KIYEMT 156 (239)
Q Consensus 151 ~i~d~~ 156 (239)
.+|+..
T Consensus 153 ~~~~~~ 158 (333)
T d1ri6a_ 153 CLFTVS 158 (333)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 777764
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=9.4e-19 Score=133.18 Aligned_cols=211 Identities=12% Similarity=0.097 Sum_probs=147.7
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEe----------eCCCeEEEEeCCCCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISG----------SYDKTVNVYDTRSPD 76 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~----------~~dg~v~vw~~~~~~ 76 (239)
++.|++||..+++.+.++..+. .+ .++|+| ++++|++. ..|+.|++||+.+++
T Consensus 27 ~~~v~v~D~~tg~~~~~~~~g~--------------~~--~~a~Sp-Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~ 89 (355)
T d2bbkh_ 27 VTQQFVIDGEAGRVIGMIDGGF--------------LP--NPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 89 (355)
T ss_dssp SEEEEEEETTTTEEEEEEEECS--------------SC--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred cCeEEEEECCCCcEEEEEECCC--------------CC--ceEEcC-CCCEEEEEeCCCccccccCCCCEEEEEECCCCC
Confidence 4679999999999999887765 33 799999 67766543 447899999999998
Q ss_pred ceeeec-C-------CCCEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeEEEEEecc--------------------
Q psy11036 77 PVMSVN-H-------GSPVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKLLHKFTCH-------------------- 125 (239)
Q Consensus 77 ~~~~~~-~-------~~~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~-------------------- 125 (239)
....+. + ......++|+|+++.++++. +..+.+|+.. .++.+..+..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg 168 (355)
T d2bbkh_ 90 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE-GKAFKRMLDVPDCYHIFPTAPDTFFMHCRDG 168 (355)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred EEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecC-CCcEeeEEecCCcceEeecCCcceEEEcCCC
Confidence 877652 1 12335689999999888765 4678899987 55544433211
Q ss_pred -------------------------CCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeee-----------------
Q psy11036 126 -------------------------HKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSF----------------- 163 (239)
Q Consensus 126 -------------------------~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----------------- 163 (239)
...+....+.+++..++.++.++.+++|++.......+
T Consensus 169 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p 248 (355)
T d2bbkh_ 169 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP 248 (355)
T ss_dssp CEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE
T ss_pred CEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeec
Confidence 11122345555666778888899999999872211110
Q ss_pred ----------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCC--eEEEEcCCceEE
Q psy11036 164 ----------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK--RLISASLDHHAK 213 (239)
Q Consensus 164 ----------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~i~ 213 (239)
.+...+.+||..+ .+.+..+.. ...+.+++|+|||+ ++++++.|+.|+
T Consensus 249 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~ 326 (355)
T d2bbkh_ 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLY 326 (355)
T ss_dssp CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred cceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC-CcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEE
Confidence 1124588999887 455555543 45588999999997 456778899999
Q ss_pred EEEccCCeeeEEec-CCCCeeeeEe
Q psy11036 214 IYEMVNFSPVHTLD-YPSPVLSIDV 237 (239)
Q Consensus 214 iwd~~~~~~~~~~~-~~~~v~~~~~ 237 (239)
+||.++++.++++. +......+.+
T Consensus 327 v~D~~tg~~~~~i~~~G~~p~~i~~ 351 (355)
T d2bbkh_ 327 IHDAESGEELRSVNQLGHGPQVITT 351 (355)
T ss_dssp EEETTTCCEEEEECCCCSSCCEEEC
T ss_pred EEECCCCCEEEEEeCcCCCccEEEe
Confidence 99999999999997 4444444443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=4.7e-18 Score=127.93 Aligned_cols=188 Identities=11% Similarity=0.080 Sum_probs=132.8
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEee------------CCCeEEEEeCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGS------------YDKTVNVYDTR 73 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------------~dg~v~vw~~~ 73 (239)
.++.|++||+.+++.+..+..+... .....+..++|+| +++.++++. .+..+.+||..
T Consensus 54 ~~~~v~v~D~~t~~~~~~~~~~~~~---------~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (337)
T d1pbyb_ 54 KSESLVKIDLVTGETLGRIDLSTPE---------ERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123 (337)
T ss_dssp TTTEEEEEETTTCCEEEEEECCBTT---------EEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETT
T ss_pred CCCeEEEEECCCCcEEEEEecCCCc---------ccccceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeecccc
Confidence 4689999999999999888766410 0002345789999 777777665 35788999999
Q ss_pred CCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEec-----------------------------
Q psy11036 74 SPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTC----------------------------- 124 (239)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~----------------------------- 124 (239)
+++....+.....+..++++|+++++++++ +.+.+||.. .++....+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (337)
T d1pbyb_ 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLG-RDLHVMDPE-AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP 201 (337)
T ss_dssp TTEEEEEEECCSSCCCEEECTTSSCEEEES-SSEEEEETT-TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred CCeEEEeccccCCceEEEEcCCCCEEEEEc-CCcceeeee-cCcEEEEeecCCccccceecCCcceeeccccccceeeee
Confidence 998888887778888999999999998876 446778876 4444433321
Q ss_pred -------------------------------------cCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecce
Q psy11036 125 -------------------------------------HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGL 167 (239)
Q Consensus 125 -------------------------------------~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 167 (239)
+...+..+.++|++.+++. ..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 260 (337)
T d1pbyb_ 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG---------------------AYN 260 (337)
T ss_dssp EEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE---------------------EES
T ss_pred eeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEE---------------------ccc
Confidence 1122222333333333322 233
Q ss_pred eEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecC
Q psy11036 168 DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDY 228 (239)
Q Consensus 168 ~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 228 (239)
.+.+||+.+ .+.+..+. +...+.+++|+|||++|++++.|+.|++||.++++.+.+++.
T Consensus 261 ~i~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 261 VLESFDLEK-NASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEEEETTT-TEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred cEEEEECCC-CcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 455565554 55555554 456788999999999999999999999999999999999873
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=1.9e-18 Score=135.48 Aligned_cols=174 Identities=9% Similarity=-0.035 Sum_probs=128.3
Q ss_pred CEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCC-eEEEEEe---ccCCceE
Q psy11036 56 DIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGG-KLLHKFT---CHHKTVT 130 (239)
Q Consensus 56 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~-~~~~~~~---~~~~~i~ 130 (239)
-++++.+.||+|.+||..+++.+..+.....+..++|+|||+++++++ |+.+.+||+.... +...+++ .|.+.+.
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~ 112 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 112 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence 346899999999999999999999996566799999999999999888 8999999997322 2333333 4555566
Q ss_pred EEEEcCCCCEE-EEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeE-EEEc
Q psy11036 131 SLCLASGGKRL-ISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL-ISAS 207 (239)
Q Consensus 131 ~i~~~~~~~~l-~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s 207 (239)
+..|+|||++| ++++.++.|++||.. ++.+..+.+... ...... ..+......+.++|+|..+ ++.+
T Consensus 113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~v~~s~dg~~~~vs~~ 182 (432)
T d1qksa2 113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM---------TYDEQE-YHPEPRVAAILASHYRPEFIVNVK 182 (432)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE---------CTTTCC-EESCCCEEEEEECSSSSEEEEEET
T ss_pred ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCc---------ccccee-ccCCCceeEEEECCCCCEEEEEEc
Confidence 66778899976 678889999999998 444444421110 000000 1234556788999998875 5667
Q ss_pred CCceEEEEEccCCeee--EEecCCCCeeeeEecC
Q psy11036 208 LDHHAKIYEMVNFSPV--HTLDYPSPVLSIDVSM 239 (239)
Q Consensus 208 ~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp 239 (239)
.++.|.+||..+++.. .++.....+..++|+|
T Consensus 183 ~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp 216 (432)
T d1qksa2 183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 216 (432)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred cCCeEEEEEccCCCcceEEEEcccCccccceECC
Confidence 7899999999887754 4556777888999887
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.81 E-value=8.3e-18 Score=127.00 Aligned_cols=189 Identities=11% Similarity=0.085 Sum_probs=140.3
Q ss_pred EEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee--cCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEe
Q psy11036 48 GTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV--NHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFT 123 (239)
Q Consensus 48 ~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~ 123 (239)
+++++ ++++|++++.|++|.+||+.+++.+.++ .+...+.+++|+|||+++++++ ++.|.+||+. +++.+..+.
T Consensus 2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~-t~~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCKNTFHAN 79 (346)
T ss_dssp CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEE
T ss_pred ccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCc-cCeeeeeec
Confidence 46788 8999999999999999999999988876 4566788999999999886554 6899999998 777777765
Q ss_pred ccC------CceEEEEEcCCCCEEEEEe------------cCCeEEEEEcc-cceEeee---------------------
Q psy11036 124 CHH------KTVTSLCLASGGKRLISAS------------LDHHAKIYEMT-LKTVSSF--------------------- 163 (239)
Q Consensus 124 ~~~------~~i~~i~~~~~~~~l~~~~------------~d~~i~i~d~~-~~~~~~~--------------------- 163 (239)
... ..+..++|+|||+++++++ .++.+.+|+.. ++....+
T Consensus 80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (346)
T d1jmxb_ 80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY 159 (346)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence 332 2356789999999988765 46788899887 3222111
Q ss_pred ecceeEEEEEccC-------------------------------------------------------------------
Q psy11036 164 TGGLDVCIWDMLG------------------------------------------------------------------- 176 (239)
Q Consensus 164 ~~~~~i~~~d~~~------------------------------------------------------------------- 176 (239)
..+.++.+|+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (346)
T d1jmxb_ 160 VAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239 (346)
T ss_dssp EESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT
T ss_pred EeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCC
Confidence 1122244444322
Q ss_pred CCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 177 GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 177 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
..........|...+..+.+++++.+++... ++.|++||..+++.+..+.....+.+++|||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~ 301 (346)
T d1jmxb_ 240 GKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDK 301 (346)
T ss_dssp CCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECS
T ss_pred CceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcC
Confidence 1112222334566677788888888887765 4579999999999999999888999999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.80 E-value=6.1e-18 Score=132.31 Aligned_cols=171 Identities=11% Similarity=0.035 Sum_probs=125.0
Q ss_pred CEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeE--EEEEe---ccCCce
Q psy11036 56 DIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKL--LHKFT---CHHKTV 129 (239)
Q Consensus 56 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~--~~~~~---~~~~~i 129 (239)
.++++.+.||+|++||+.+++.+.++.....+..++|+|||+++++++ |+.+++||+. +++. ...+. +|.+.+
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~-t~~~~~~~~i~~~~~~~~~~ 111 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLW-AKEPTKVAEIKIGIEARSVE 111 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETT-SSSCEEEEEEECCSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEcc-CCceeEEEEEeCCCCCcceE
Confidence 355778899999999999999999997667899999999999999888 8999999998 4442 23333 455566
Q ss_pred EEEEEcCCCCEEEE-EecCCeEEEEEcc-cceEeeeec----------------------------------ceeEEEEE
Q psy11036 130 TSLCLASGGKRLIS-ASLDHHAKIYEMT-LKTVSSFTG----------------------------------GLDVCIWD 173 (239)
Q Consensus 130 ~~i~~~~~~~~l~~-~~~d~~i~i~d~~-~~~~~~~~~----------------------------------~~~i~~~d 173 (239)
.+++|+|||+++++ +..++.+++||.. .+.+....+ ...+.+++
T Consensus 112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~ 191 (426)
T d1hzua2 112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191 (426)
T ss_dssp ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 77788899998754 5589999999988 444433211 11122222
Q ss_pred ccCCCEEEEEEecccCcEEEEEEccCCCeEEEEc-CCceEEEEEccCCeeeEEec
Q psy11036 174 MLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 174 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~ 227 (239)
.............+...+..+.|+|++++++++. .+..+.+++..+++.+..+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 246 (426)
T d1hzua2 192 YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 246 (426)
T ss_dssp CSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred eccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEec
Confidence 2222222333345677788999999999887665 56789999999999887765
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.78 E-value=1.3e-16 Score=118.17 Aligned_cols=159 Identities=17% Similarity=0.224 Sum_probs=129.6
Q ss_pred EEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEc
Q psy11036 58 VISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 135 (239)
Q Consensus 58 l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~ 135 (239)
+++++.|++|.+||+.+++.+.++.....+..++|+|+|+++++++ ++.|.+||+. +++.+..+..+.. +..++++
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~-t~~~~~~~~~~~~-~~~~~~~ 82 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA-TNNVIATVPAGSS-PQGVAVS 82 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT-TTEEEEEEECSSS-EEEEEEC
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECC-CCceeeeeecccc-ccccccc
Confidence 4567789999999999999998887777889999999999886544 6899999998 7888888887654 5889999
Q ss_pred CCCCEEEE-EecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEE-EEcCCceEE
Q psy11036 136 SGGKRLIS-ASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLI-SASLDHHAK 213 (239)
Q Consensus 136 ~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~d~~i~ 213 (239)
+++..+++ +..++.+.+|+.. ..+....+.. ......+.|+|+++.++ ++..++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~ 141 (301)
T d1l0qa2 83 PDGKQVYVTNMASSTLSVIDTT--------------------SNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVS 141 (301)
T ss_dssp TTSSEEEEEETTTTEEEEEETT--------------------TTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred cccccccccccccceeeecccc--------------------cceeeeeccc-cccceEEEeecCCCeeeeeecccccee
Confidence 99986554 5567788888877 3455555554 45577899999998775 566789999
Q ss_pred EEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 214 IYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 214 iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
+|+..+++.+..+.....+..++++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
T d1l0qa2 142 VINTVTKAVINTVSVGRSPKGIAVTP 167 (301)
T ss_dssp EEETTTTEEEEEEECCSSEEEEEECT
T ss_pred eeeccccceeeecccCCCceEEEeec
Confidence 99999999999998878888888875
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=1.7e-16 Score=121.64 Aligned_cols=210 Identities=9% Similarity=-0.050 Sum_probs=138.8
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEe----------eCCCeEEEEeCCCCCc
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISG----------SYDKTVNVYDTRSPDP 77 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~----------~~dg~v~vw~~~~~~~ 77 (239)
..|++||..+++.+..+..+. .+ .++|+| +++.|++. +.|+.|++||..++++
T Consensus 46 ~~~~~~d~~~~~~~~~~~~~~--------------~~--~~a~sp-Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~ 108 (368)
T d1mdah_ 46 TENWVSCAGCGVTLGHSLGAF--------------LS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp EEEEEEETTTTEEEEEEEECT--------------TC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred ceEEEEeCCCCcEEEEEeCCC--------------CC--cceECC-CCCEEEEEcccCccccccccCCeEEEEECCCCcE
Confidence 567888999999999888775 44 589999 67766654 3477899999999998
Q ss_pred eeeec-C-------CCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCc-------eEEEEEcCCCCE
Q psy11036 78 VMSVN-H-------GSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKT-------VTSLCLASGGKR 140 (239)
Q Consensus 78 ~~~~~-~-------~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~-------i~~i~~~~~~~~ 140 (239)
+..+. + ......++|+|+|++++++. ++.+.+||+. .++....+..+... ...+.++++|..
T Consensus 109 ~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~ 187 (368)
T d1mdah_ 109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVP-GASDDQLTKSASCFHIHPGAAATHYLGSCPASL 187 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEET-TTEEEEEEECSSCCCCEEEETTEEECCCCTTSC
T ss_pred eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECC-CCcEeEEeeccCcceEccCCCceEEEEcCCCCE
Confidence 87662 1 12234689999999998775 5999999998 77777766543321 122333444433
Q ss_pred EEEEec------------------------------------CCeEEEEEcccceEeee---------------------
Q psy11036 141 LISASL------------------------------------DHHAKIYEMTLKTVSSF--------------------- 163 (239)
Q Consensus 141 l~~~~~------------------------------------d~~i~i~d~~~~~~~~~--------------------- 163 (239)
++.... ++.+.+++.........
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 267 (368)
T d1mdah_ 188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp EEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred EEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCce
Confidence 322211 12223333320000000
Q ss_pred -----------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCe--EEEEcCCceEEEEEcc
Q psy11036 164 -----------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR--LISASLDHHAKIYEMV 218 (239)
Q Consensus 164 -----------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~--l~s~s~d~~i~iwd~~ 218 (239)
.+...+.+||..+. +.+..+. +...+..++|+|||+. ++++..|+.|++||..
T Consensus 268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~-~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~ 345 (368)
T d1mdah_ 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred eEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC-cEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence 11234778888774 4444443 2356888999999973 4677889999999999
Q ss_pred CCeeeEEecCCCCeeeeEe
Q psy11036 219 NFSPVHTLDYPSPVLSIDV 237 (239)
Q Consensus 219 ~~~~~~~~~~~~~v~~~~~ 237 (239)
+++.+.+++.....+.|++
T Consensus 346 tgk~~~~i~~g~~P~~l~~ 364 (368)
T d1mdah_ 346 SDQDQSSVELDKGPESLSV 364 (368)
T ss_dssp SCEEEEECCCCSCCCEEEC
T ss_pred CCCEEEEEECCCCCCEEEE
Confidence 9999999996666666654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=1e-14 Score=109.38 Aligned_cols=166 Identities=8% Similarity=0.063 Sum_probs=115.0
Q ss_pred CEEEEeeCCCeEEEEeCCCCCc---eeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEE--EEeccCCc
Q psy11036 56 DIVISGSYDKTVNVYDTRSPDP---VMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLH--KFTCHHKT 128 (239)
Q Consensus 56 ~~l~s~~~dg~v~vw~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~--~~~~~~~~ 128 (239)
..+++++.|++|++|++.+... +..+.+.+.+..++|+|+|++|++++ ++.|.+|++........ ....+...
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence 3567888999999999975543 33447889999999999999986665 69999999974332222 22234456
Q ss_pred eEEEEEcCCCCEEEEEec-CCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEc
Q psy11036 129 VTSLCLASGGKRLISASL-DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS 207 (239)
Q Consensus 129 i~~i~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 207 (239)
+..++|+|||++|++++. ++.+.+|+..... .........+...+.++.++|+++++++++
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~------------------~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~ 146 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL------------------PVGVVDVVEGLDGCHSANISPDNRTLWVPA 146 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTE------------------EEEEEEEECCCTTBCCCEECTTSSEEEEEE
T ss_pred ceEEEEcCCCCEEeecccCCCceeeecccccc------------------ceecccccCCCccceEEEeeecceeeeccc
Confidence 778999999999998875 6788888876111 111222344566788899999999888776
Q ss_pred -CCceEEEEEccCCeeeEE-------ecCCCCeeeeEecC
Q psy11036 208 -LDHHAKIYEMVNFSPVHT-------LDYPSPVLSIDVSM 239 (239)
Q Consensus 208 -~d~~i~iwd~~~~~~~~~-------~~~~~~v~~~~~sp 239 (239)
.+..|.+|+......... .........++|+|
T Consensus 147 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~ 186 (333)
T d1ri6a_ 147 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP 186 (333)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT
T ss_pred cccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEec
Confidence 456799999866433221 11334556666654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.65 E-value=4.4e-15 Score=117.20 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=99.0
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC---------CCeEEEEeCCCCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY---------DKTVNVYDTRSPD 76 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---------dg~v~vw~~~~~~ 76 (239)
.++.|.+||+.+++....+..+. +..+...|.++.|+| ++++|+.++. ++.+.+||+.+++
T Consensus 34 ~~~~~~~~~~~t~~~~~~~~~~~---------~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~ 103 (470)
T d2bgra1 34 QENNILVFNAEYGNSSVFLENST---------FDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ 103 (470)
T ss_dssp SSSCEEEEETTTCCEEEEECTTT---------TTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred cCCcEEEEECCCCCEEEEEchhh---------hhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEEEECCCCc
Confidence 46889999999998776555443 222226799999999 7888887643 5688999999887
Q ss_pred ceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEec------------------cCCceEEEEEcCCC
Q psy11036 77 PVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTC------------------HHKTVTSLCLASGG 138 (239)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~------------------~~~~i~~i~~~~~~ 138 (239)
......+...+..+.|+|+|+.++...++.+.+|+.. .++..+.... ..+....+.|+|||
T Consensus 104 ~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~-~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG 182 (470)
T d2bgra1 104 LITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP-NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 182 (470)
T ss_dssp ECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESST-TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS
T ss_pred ccccccCCccccccccccCcceeeEeecccceEEECC-CCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCC
Confidence 5544468889999999999999999889999999987 5544433221 12334668899999
Q ss_pred CEEEEEecC
Q psy11036 139 KRLISASLD 147 (239)
Q Consensus 139 ~~l~~~~~d 147 (239)
++|+....|
T Consensus 183 k~ia~~~~d 191 (470)
T d2bgra1 183 TFLAYAQFN 191 (470)
T ss_dssp SEEEEEEEE
T ss_pred CccceeEec
Confidence 999987654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.54 E-value=1e-13 Score=104.84 Aligned_cols=193 Identities=11% Similarity=0.020 Sum_probs=130.3
Q ss_pred CeEEEEEecCCCCEEEEe-----eCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-----------CCcE
Q psy11036 44 YVRAGTVSPVSSDIVISG-----SYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-----------GLDV 107 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~-----~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~~~i 107 (239)
++.-.+.+| +++.+++. ..+.+|.+||..+++.+.++... ....++|+|+|+++++++ ++.|
T Consensus 3 p~~~~a~sp-dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 3 PRILEAPAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLPNPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCBCCCCCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CcEeEeeCC-CCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-CCCceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence 344445678 66666553 34568999999999988877422 223699999999887653 4789
Q ss_pred EEEEccCCCeEEEEEeccCC-------ceEEEEEcCCCCEEEEEe--cCCeEEEEEcc-cceEeee--------------
Q psy11036 108 CIWDMLGGGKLLHKFTCHHK-------TVTSLCLASGGKRLISAS--LDHHAKIYEMT-LKTVSSF-------------- 163 (239)
Q Consensus 108 ~~~d~~~~~~~~~~~~~~~~-------~i~~i~~~~~~~~l~~~~--~d~~i~i~d~~-~~~~~~~-------------- 163 (239)
.+||+. +++....+..+.. ....++|+|++++++.+. .+..+.+|+.. ++.+..+
T Consensus 81 ~v~D~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d2bbkh_ 81 EVFDPV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD 159 (355)
T ss_dssp EEECTT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETT
T ss_pred EEEECC-CCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCc
Confidence 999998 7777777654332 235688999999877764 45788889887 4333222
Q ss_pred -----------------------------------------------------ecceeEEEEEccCCCEE-EEEEeccc-
Q psy11036 164 -----------------------------------------------------TGGLDVCIWDMLGGGKL-LHKFTCHH- 188 (239)
Q Consensus 164 -----------------------------------------------------~~~~~i~~~d~~~~~~~-~~~~~~h~- 188 (239)
..++.+.+|+....... +.....+.
T Consensus 160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 239 (355)
T d2bbkh_ 160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTE 239 (355)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred ceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCccc
Confidence 11333666666543221 11122111
Q ss_pred ---------CcEEEEEEccCCCeEEEEcCC----------ceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 189 ---------KTVTSLCLASGGKRLISASLD----------HHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 189 ---------~~v~~~~~s~~~~~l~s~s~d----------~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.....+++++++..++..+.+ ..|.+||..+++.+.++.....+.+++|+|
T Consensus 240 ~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~sp 309 (355)
T d2bbkh_ 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQ 309 (355)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECC
T ss_pred ceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcC
Confidence 122347888888887765433 479999999999999998778889999987
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.51 E-value=1.1e-11 Score=94.20 Aligned_cols=195 Identities=10% Similarity=-0.049 Sum_probs=129.7
Q ss_pred CCCeEEEEEecCCCCEEEEe-----eCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-----------CC
Q psy11036 42 QDYVRAGTVSPVSSDIVISG-----SYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-----------GL 105 (239)
Q Consensus 42 ~~~v~~~~~~~~~~~~l~s~-----~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~~ 105 (239)
..++.+++++| +++.++.. +..+.|.+||..+++.+..+.... ...++|+|+|++++++. ++
T Consensus 20 ~~p~~~~a~sp-dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~-~~~~a~SpDG~~l~va~~~~~~~~~~~~~~ 97 (373)
T d2madh_ 20 DGPTNDEAPGA-DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-LPNPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred CCCccccccCC-CCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC-CccEEEcCCCCEEEEEeecCCcccccccce
Confidence 38899999999 66666543 234679999999999988874222 23799999999998874 36
Q ss_pred cEEEEEccCCCeEEEEEeccCCce-------EEEEEcCCCCEEEEEe--cCCeEEEEEcc-cceEee-------------
Q psy11036 106 DVCIWDMLGGGKLLHKFTCHHKTV-------TSLCLASGGKRLISAS--LDHHAKIYEMT-LKTVSS------------- 162 (239)
Q Consensus 106 ~i~~~d~~~~~~~~~~~~~~~~~i-------~~i~~~~~~~~l~~~~--~d~~i~i~d~~-~~~~~~------------- 162 (239)
.|.+||.. +++....+..+.... ..+.|+++++.++... .++.+.+|+.. .+....
T Consensus 98 ~v~v~D~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 176 (373)
T d2madh_ 98 YVEVFDPV-TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGA 176 (373)
T ss_pred EEEEEECC-CCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCC
Confidence 79999998 777777776555433 4578889998766554 45678888876 222211
Q ss_pred ------eecceeEEEEEccCCCEEE-----------------------------------EEE-------------eccc
Q psy11036 163 ------FTGGLDVCIWDMLGGGKLL-----------------------------------HKF-------------TCHH 188 (239)
Q Consensus 163 ------~~~~~~i~~~d~~~~~~~~-----------------------------------~~~-------------~~h~ 188 (239)
..+++.+.+||........ ..+ ..+.
T Consensus 177 ~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 256 (373)
T d2madh_ 177 PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALS 256 (373)
T ss_pred CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeecccc
Confidence 1334556677654321100 000 0000
Q ss_pred ----------CcEEEEEEccCCCeE----------EEEcCCceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 189 ----------KTVTSLCLASGGKRL----------ISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 189 ----------~~v~~~~~s~~~~~l----------~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.....+++++++..+ ++...++.+.+||..+++.+..+.+...+.+++|+|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~sp 327 (373)
T d2madh_ 257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQ 327 (373)
T ss_pred CcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECC
Confidence 011234555555443 344556789999999999999999989999999987
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=4.3e-10 Score=81.48 Aligned_cols=212 Identities=10% Similarity=0.028 Sum_probs=126.3
Q ss_pred EEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCC---CeEEEEeCCCCCceeeecCCC
Q psy11036 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYD---KTVNVYDTRSPDPVMSVNHGS 85 (239)
Q Consensus 9 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~v~vw~~~~~~~~~~~~~~~ 85 (239)
.|+|.|.+..... .+..+. ..+...+|+| +|+.|+-.... ..+.+.+...+.......+..
T Consensus 20 ~l~i~d~dG~~~~-~l~~~~--------------~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (269)
T d2hqsa1 20 ELRVSDYDGYNQF-VVHRSP--------------QPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR 83 (269)
T ss_dssp EEEEEETTSCSCE-EEEEES--------------SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS
T ss_pred EEEEEcCCCCCcE-EEecCC--------------CceeeeEECC-CCCEEEEEEeeccCcceeeeecccCceeEEeeeec
Confidence 6888887644444 444344 7788999999 78877754333 357777777776665557788
Q ss_pred CEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEE-ecCCeEEEE--EcccceE
Q psy11036 86 PVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA-SLDHHAKIY--EMTLKTV 160 (239)
Q Consensus 86 ~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~--d~~~~~~ 160 (239)
......|+|+|+.++... .+...++.......................+++++..+... ..++...+| ++.....
T Consensus 84 ~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~ 163 (269)
T d2hqsa1 84 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 163 (269)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred ccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc
Confidence 889999999999888765 33333332221223333333344444455666666544433 334433333 3331111
Q ss_pred eee-------------------------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEc---CCceE
Q psy11036 161 SSF-------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS---LDHHA 212 (239)
Q Consensus 161 ~~~-------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s---~d~~i 212 (239)
..+ .+...+.+.+...... ....+........|||||+.|+-.+ ....|
T Consensus 164 ~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l 240 (269)
T d2hqsa1 164 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVL 240 (269)
T ss_dssp EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---EECCCSSSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred eeeecccccccccccccccceeEEEeecCCceeeeEeecccccc---eEeecCccccceEECCCCCEEEEEEcCCCCcEE
Confidence 110 1122344445443222 2223455667889999999887444 34578
Q ss_pred EEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 213 KIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
.++++..+...+.....+.+...+|||
T Consensus 241 ~~~~~dg~~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 241 NLVSTDGRFKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp EEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred EEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence 999998776655444677888999998
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.44 E-value=4.1e-12 Score=97.88 Aligned_cols=214 Identities=7% Similarity=0.016 Sum_probs=135.2
Q ss_pred CCCCCCCCEEEEeeCCCcceeeeeeCCce----eeccc------------eeeccCCCCCeEEEEEecCCCCEE-EEeeC
Q psy11036 1 MSHDLPILIVALWDIPSEAQVSTFTNHTT----IYKVP------------LMLYSTPQDYVRAGTVSPVSSDIV-ISGSY 63 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~ 63 (239)
|.+.|.+|+|++|++.+++.++++..-.+ .++.. ......+..........| ++++| ++...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-DGr~lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-DGKYLFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-EEEEEEEEETT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC-CCCEEEEEcCC
Confidence 56678899999999999999888754221 11110 001111222344455578 56666 55567
Q ss_pred CCeEEEEeCCCCCceeee--cCCCCEEEEEEecCCcE--EEEeCCCcE------------------EEEEccCCCeEEEE
Q psy11036 64 DKTVNVYDTRSPDPVMSV--NHGSPVESVLCLPSGGI--FVTGGGLDV------------------CIWDMLGGGKLLHK 121 (239)
Q Consensus 64 dg~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~--l~~~~~~~i------------------~~~d~~~~~~~~~~ 121 (239)
+.+|.++|+.+++....+ +....+..++|+|+++. ++..++..+ ..+|.. +.+...+
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~-t~~v~~q 171 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAE-TMDVAWQ 171 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETT-TCSEEEE
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCc-cceeeEE
Confidence 889999999999877655 56788999999999984 433334333 447776 5555555
Q ss_pred EeccCCceEEEEEcCCCCEEEEEecCC-e--------------EEEEEcc-------cceEeeeecceeEEEEEccCCCE
Q psy11036 122 FTCHHKTVTSLCLASGGKRLISASLDH-H--------------AKIYEMT-------LKTVSSFTGGLDVCIWDMLGGGK 179 (239)
Q Consensus 122 ~~~~~~~i~~i~~~~~~~~l~~~~~d~-~--------------i~i~d~~-------~~~~~~~~~~~~i~~~d~~~~~~ 179 (239)
+... +....+.++|+|+++++.+.+. . |.+.+.. ........+.+.+.+++ .....
T Consensus 172 I~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~-~~~~~ 249 (441)
T d1qnia2 172 VIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDG-RGESE 249 (441)
T ss_dssp EEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC-SSSCS
T ss_pred EecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEc-ccCCc
Confidence 5533 4568899999999988877653 2 2222221 00011112233344444 33345
Q ss_pred EEEEEecccCcEEEEEEccCCCeEE-EEcCCceEEEEEccC
Q psy11036 180 LLHKFTCHHKTVTSLCLASGGKRLI-SASLDHHAKIYEMVN 219 (239)
Q Consensus 180 ~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~d~~i~iwd~~~ 219 (239)
.+..+..... ...+.++|||++++ ++..+++|.+||+++
T Consensus 250 v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k 289 (441)
T d1qnia2 250 FTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289 (441)
T ss_dssp SEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred eEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence 5556655444 56789999999875 567899999999865
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.39 E-value=2.7e-11 Score=93.26 Aligned_cols=199 Identities=13% Similarity=0.123 Sum_probs=133.3
Q ss_pred CCCCCCEEEEeeCCCcceeeeeeCC-ceeeccceeeccCCCCCeEEEEEecCCCC--EEEEeeCCC--------------
Q psy11036 3 HDLPILIVALWDIPSEAQVSTFTNH-TTIYKVPLMLYSTPQDYVRAGTVSPVSSD--IVISGSYDK-------------- 65 (239)
Q Consensus 3 ~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~dg-------------- 65 (239)
.+..++.|.++|+++++..+.+... . ..+..++|+| +++ +++..+.+.
T Consensus 89 ~d~~~~rVavIDl~t~k~~~ii~iP~g--------------~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~ 153 (441)
T d1qnia2 89 NDKANTRVARIRLDIMKTDKITHIPNV--------------QAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDN 153 (441)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTC--------------CCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGG
T ss_pred EcCCCCEEEEEECCCCcEeeEEecCCC--------------CCccceEEec-cCCEEEEEeccCCcccccCccccccccc
Confidence 4456789999999999988877643 3 6789999999 455 444433332
Q ss_pred ---eEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-C-------------------------------------
Q psy11036 66 ---TVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-G------------------------------------- 104 (239)
Q Consensus 66 ---~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~------------------------------------- 104 (239)
.+..+|..+.+...++........+.++|+|+++++++ +
T Consensus 154 ~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~ 233 (441)
T d1qnia2 154 SYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKT 233 (441)
T ss_dssp EEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBC
T ss_pred ccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEE
Confidence 23558888888777776566788899999999888775 2
Q ss_pred ----CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEE-EEecCCeEEEEEcc-cc-----------eE-------
Q psy11036 105 ----LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLI-SASLDHHAKIYEMT-LK-----------TV------- 160 (239)
Q Consensus 105 ----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~i~d~~-~~-----------~~------- 160 (239)
+.+.+++.. ....+..+..... ...+.++|||++++ ++..+++|.+||++ .+ ++
T Consensus 234 v~~~~v~vvd~~~-~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~g 311 (441)
T d1qnia2 234 IGDSKVPVVDGRG-ESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELG 311 (441)
T ss_dssp CTTCCCCEEECSS-SCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCC
T ss_pred eCCCCcEEEEccc-CCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccc
Confidence 122222222 3445666665555 47899999999765 56789999999985 11 00
Q ss_pred -----eeee----------cceeEEEEEccC---------CCEEEEEE-----ecccCcEEEEEEccCCCeEEEE---cC
Q psy11036 161 -----SSFT----------GGLDVCIWDMLG---------GGKLLHKF-----TCHHKTVTSLCLASGGKRLISA---SL 208 (239)
Q Consensus 161 -----~~~~----------~~~~i~~~d~~~---------~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~---s~ 208 (239)
..+. .+..+..|++.. ....+..+ .+|...+.+.+++|||++|+++ |.
T Consensus 312 lgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~ 391 (441)
T d1qnia2 312 LGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSK 391 (441)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCG
T ss_pred cCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCcccc
Confidence 0111 234488888631 12234444 4666667777899999999999 55
Q ss_pred Cc----------eEEEEEcc
Q psy11036 209 DH----------HAKIYEMV 218 (239)
Q Consensus 209 d~----------~i~iwd~~ 218 (239)
|. +-.+.|+.
T Consensus 392 dr~~~~g~~~~~~~q~~~i~ 411 (441)
T d1qnia2 392 DRFLPVGPLHPENDQLIDIS 411 (441)
T ss_dssp GGSCCCSSSCCEEEEEEECS
T ss_pred ccCcCCCCCCCccceeEEec
Confidence 65 45778885
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.31 E-value=2.9e-12 Score=100.79 Aligned_cols=162 Identities=10% Similarity=0.085 Sum_probs=108.3
Q ss_pred EEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec------CCCCEEEEEEecCCcEEEEeC----------CCcEEE
Q psy11036 46 RAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN------HGSPVESVLCLPSGGIFVTGG----------GLDVCI 109 (239)
Q Consensus 46 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~----------~~~i~~ 109 (239)
..+.|.+ +++++.. .|+.+.+||+.+++....+. +...|.++.|+|||++|+.+. ++.+.+
T Consensus 20 ~~~~W~~-d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 20 YSLRWIS-DHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCCEECS-SSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred cCCEeCC-CCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence 3678998 6776653 57889999999998766552 456799999999999998774 256889
Q ss_pred EEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEeccc
Q psy11036 110 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHH 188 (239)
Q Consensus 110 ~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~ 188 (239)
||+. +++ +..+..+...+..+.|+|||+.+|.. .++.+.+|+.. ++..........-.+++...... . .....
T Consensus 97 ~d~~-~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~--~-~~~~~ 170 (470)
T d2bgra1 97 YDLN-KRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV--Y-EEEVF 170 (470)
T ss_dssp EETT-TTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH--H-HHHTS
T ss_pred EECC-CCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCccccccccee--e-eeeec
Confidence 9997 554 55677788899999999999999985 57789999988 33332221111100111000000 0 00122
Q ss_pred CcEEEEEEccCCCeEEEEcCCce-EEEEE
Q psy11036 189 KTVTSLCLASGGKRLISASLDHH-AKIYE 216 (239)
Q Consensus 189 ~~v~~~~~s~~~~~l~s~s~d~~-i~iwd 216 (239)
+....+.|||||+.|+....|.. +..|.
T Consensus 171 ~~~~~~~wSPDGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred CCccccEECCCCCccceeEecCCcCceEE
Confidence 34456789999999988765433 44443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.28 E-value=4.4e-09 Score=77.65 Aligned_cols=193 Identities=7% Similarity=0.028 Sum_probs=126.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHK 121 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~ 121 (239)
..+..+++.| +++++++...+++|..++.. ++..........+.+++++++|+++++.. ++.+..++..........
T Consensus 28 ~~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 28 TFLENLASAP-DGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 105 (302)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcCCEEECC-CCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceee
Confidence 4688999999 78999999999999888854 44333346678899999999999888776 577777776533222332
Q ss_pred Ee--ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeee--------------------------------ecce
Q psy11036 122 FT--CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSF--------------------------------TGGL 167 (239)
Q Consensus 122 ~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------------------------------~~~~ 167 (239)
+. ........+++.++++++++-+.++.+..++......... +...
T Consensus 106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~ 185 (302)
T d2p4oa1 106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKM 185 (302)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTT
T ss_pred ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCC
Confidence 22 2445678999999999988888888888887762221111 1122
Q ss_pred eEEEEEccCCCEEE-EEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCe-eeEEec-CCCCeeeeEe
Q psy11036 168 DVCIWDMLGGGKLL-HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFS-PVHTLD-YPSPVLSIDV 237 (239)
Q Consensus 168 ~i~~~d~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~ 237 (239)
.+..++........ ............+++.++|+++++...++.|..++..... .+.... .-...++++|
T Consensus 186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vaf 258 (302)
T d2p4oa1 186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAF 258 (302)
T ss_dssp EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEE
T ss_pred eEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEE
Confidence 24444443322111 0111122345578999999988888888999999775332 233333 3345778887
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.28 E-value=2.1e-08 Score=74.47 Aligned_cols=181 Identities=9% Similarity=0.073 Sum_probs=113.5
Q ss_pred CCeEEEEEecCCCCEEEEeeC----CCeEEEEeCCCCCceeeec---CCCCEEEEEEecCCcEEEEeCC-----CcEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSY----DKTVNVYDTRSPDPVMSVN---HGSPVESVLCLPSGGIFVTGGG-----LDVCIW 110 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~----dg~v~vw~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-----~~i~~~ 110 (239)
.....+++.+ +++++++... .+.+...+........... .......+++.++|++.++... ..-.+|
T Consensus 82 ~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~ 160 (319)
T d2dg1a1 82 ANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY 160 (319)
T ss_dssp SSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred CCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeE
Confidence 5678999999 7887776533 2345555655555444332 2345788999999997776542 122344
Q ss_pred EccCCCeEEEEEeccCCceEEEEEcCCCCEEE-EEecCCeEEEEEcc--cceEeeeecceeEEEEEccCCCEEEEEEecc
Q psy11036 111 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLI-SASLDHHAKIYEMT--LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187 (239)
Q Consensus 111 d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~i~d~~--~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h 187 (239)
.+...+..+..+...-.....++|+|+++.|. +-+..+.|..|+++ +...... ..........
T Consensus 161 ~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~--------------~~~~~~~~~~ 226 (319)
T d2dg1a1 161 YVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF--------------GATIPYYFTG 226 (319)
T ss_dssp EECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE--------------EEEEEEECCS
T ss_pred EEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccc--------------cceeeeccCC
Confidence 33323444444433344568899999998664 44567889888876 1111111 0011111111
Q ss_pred cCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCC-------CeeeeEecC
Q psy11036 188 HKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPS-------PVLSIDVSM 239 (239)
Q Consensus 188 ~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-------~v~~~~~sp 239 (239)
....-.+++.++|++.++....+.|.+||. .|+.+.++..+. .+++++|.|
T Consensus 227 ~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~ 284 (319)
T d2dg1a1 227 HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP 284 (319)
T ss_dssp SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred ccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeC
Confidence 233567999999998888888999999995 799999887543 366777754
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.18 E-value=5.1e-10 Score=84.98 Aligned_cols=193 Identities=7% Similarity=-0.091 Sum_probs=121.5
Q ss_pred CCeEEEEEecCCCCE---EEEeeCCCe--EEEEeCCCCCceeeec-CCCCEEEEEEecCCcEEEEeC-----------CC
Q psy11036 43 DYVRAGTVSPVSSDI---VISGSYDKT--VNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-----------GL 105 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~---l~s~~~dg~--v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-----------~~ 105 (239)
++...++..+ +++. .+....++. +.++|..+++.+.++. +..+ .++|+|+|+.+++++ ++
T Consensus 20 g~~~~~a~~~-~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~ 96 (368)
T d1mdah_ 20 GSSCDHGPGA-ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp CCCBCCCCCC-CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred CCccccccCC-CCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCC
Confidence 4444455566 4543 223444444 6677999988877763 2222 589999999888753 45
Q ss_pred cEEEEEccCCCeEEEEEeccCC-------ceEEEEEcCCCCEEEEEe-cCCeEEEEEcc-cceEeee-------------
Q psy11036 106 DVCIWDMLGGGKLLHKFTCHHK-------TVTSLCLASGGKRLISAS-LDHHAKIYEMT-LKTVSSF------------- 163 (239)
Q Consensus 106 ~i~~~d~~~~~~~~~~~~~~~~-------~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~------------- 163 (239)
.|.+||.. +.+....+..+.. ....++|+|||++++++. .++.+.+||+. .+.+..+
T Consensus 97 ~v~v~D~~-t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T d1mdah_ 97 YVEVFDPV-TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAA 175 (368)
T ss_dssp EEEEECTT-TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEET
T ss_pred eEEEEECC-CCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCC
Confidence 69999998 7787777764432 234689999999988776 57999999988 4433332
Q ss_pred ------eccee----------------------------------------------EEEEEccCCCEEE-EEEecc---
Q psy11036 164 ------TGGLD----------------------------------------------VCIWDMLGGGKLL-HKFTCH--- 187 (239)
Q Consensus 164 ------~~~~~----------------------------------------------i~~~d~~~~~~~~-~~~~~h--- 187 (239)
++++. +.+++........ .....+
T Consensus 176 ~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 255 (368)
T d1mdah_ 176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESG 255 (368)
T ss_dssp TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTH
T ss_pred ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccce
Confidence 11111 2223322211110 000000
Q ss_pred -------cCcEEEEEEccCCCeEEEEcC---------CceEEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 188 -------HKTVTSLCLASGGKRLISASL---------DHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 188 -------~~~v~~~~~s~~~~~l~s~s~---------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
......++++|++..++.... ...|.+||..+++.+.++.....+.+++|+|
T Consensus 256 ~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~sp 323 (368)
T d1mdah_ 256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ 323 (368)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECC
T ss_pred eeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECC
Confidence 011234678888877655432 2369999999999999998778899999987
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.17 E-value=7.9e-09 Score=74.56 Aligned_cols=173 Identities=8% Similarity=0.059 Sum_probs=112.3
Q ss_pred CeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEE
Q psy11036 44 YVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKF 122 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~ 122 (239)
....+++++ +++++++....+.+++++..+..............++++.++++++++-. ...+..++...........
T Consensus 58 ~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~ 136 (260)
T d1rwia_ 58 QPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF 136 (260)
T ss_dssp SCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC
T ss_pred CceEEEEcC-CCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeee
Confidence 456889999 78888877777777776655555444444446678999999998877655 4667777665222222111
Q ss_pred eccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCe
Q psy11036 123 TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR 202 (239)
Q Consensus 123 ~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 202 (239)
........++++++++.+++...++.|..++.++.....+ ....-.....+++.++|++
T Consensus 137 -~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~--------------------~~~~~~~p~gi~~d~~g~l 195 (260)
T d1rwia_ 137 -TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--------------------PFTDITAPWGIAVDEAGTV 195 (260)
T ss_dssp -CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--------------------CCSSCCSEEEEEECTTCCE
T ss_pred -cccCCcceeeecCCCCEeeeccccccccccccccceeeee--------------------eccccCCCccceeeeeeee
Confidence 2234457899999999888888888888888762211111 1122345678999999998
Q ss_pred EEEEcCCceEEEEEccCCeeeEEec--CCCCeeeeEecC
Q psy11036 203 LISASLDHHAKIYEMVNFSPVHTLD--YPSPVLSIDVSM 239 (239)
Q Consensus 203 l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp 239 (239)
+++....+.|..++..... ...+. .-....+|++++
T Consensus 196 ~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~ 233 (260)
T d1rwia_ 196 YVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDS 233 (260)
T ss_dssp EEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECT
T ss_pred eeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeC
Confidence 8888888888888764432 22222 223456676653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.16 E-value=3.1e-08 Score=72.09 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=111.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee---cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV---NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~ 118 (239)
.....+++.+ +++++++....+.+.+++. +++.+..+ .+......+++.+++..+++.. .+.|.+||.. ++.
T Consensus 114 ~~p~~~avd~-~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~--G~~ 189 (279)
T d1q7fa_ 114 QHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQY 189 (279)
T ss_dssp SCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCE
T ss_pred cccceecccc-CCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeeeecC--Cce
Confidence 5577899998 7888888777788888885 45666665 2456788899999998877777 5899999984 666
Q ss_pred EEEEe--ccCCceEEEEEcCCCCEEEEEec-CCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEE
Q psy11036 119 LHKFT--CHHKTVTSLCLASGGKRLISASL-DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLC 195 (239)
Q Consensus 119 ~~~~~--~~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~ 195 (239)
+.++. +.......|++.++|+.+++-.. ++.|.+|+..++.+.++. ..........++
T Consensus 190 ~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~-------------------~~~~~~~p~~va 250 (279)
T d1q7fa_ 190 LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALE-------------------SKVKHAQCFDVA 250 (279)
T ss_dssp EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEE-------------------ESSCCSCEEEEE
T ss_pred eeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEe-------------------CCCCCCCEeEEE
Confidence 66663 24446789999999997776543 456888886633322220 011123467899
Q ss_pred EccCCCeEEEEcCCceEEEEEccCCee
Q psy11036 196 LASGGKRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 196 ~s~~~~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
+.|+|.+++ ++.++.|++|+..+..+
T Consensus 251 v~~dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 251 LMDDGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred EeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence 999998655 45789999999887655
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.14 E-value=6.1e-08 Score=71.77 Aligned_cols=179 Identities=8% Similarity=0.086 Sum_probs=112.2
Q ss_pred CeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCC----CCEEEEEEecCCcEEEEeCCC-------------
Q psy11036 44 YVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHG----SPVESVLCLPSGGIFVTGGGL------------- 105 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~----~~v~~~~~~~~~~~l~~~~~~------------- 105 (239)
....++|.+ +++.++++.....+...+.......... ... .....+++.++|.+.++...+
T Consensus 72 ~P~Gl~~~~-dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~ 150 (314)
T d1pjxa_ 72 IPAGCQCDR-DANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp CEEEEEECS-SSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred cceeEEEeC-CCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceecc
Confidence 456899999 6777777776677888887654322211 111 135779999999988774311
Q ss_pred -cEEEEEccCCCeEEEEEeccCCceEEEEEcCCCC-----EEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCC
Q psy11036 106 -DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK-----RLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGG 178 (239)
Q Consensus 106 -~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-----~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~ 178 (239)
.=.+|.+...++...... ....-+.++|+|++. .+++-+..+.|..|++. ...+.. .
T Consensus 151 ~~G~v~~~~~dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~---------------~ 214 (314)
T d1pjxa_ 151 KFGSIYCFTTDGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN---------------K 214 (314)
T ss_dssp SCEEEEEECTTSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE---------------E
T ss_pred CCceEEEEeecCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce---------------e
Confidence 123444442344333332 333457899988764 44455667888888776 111110 0
Q ss_pred EEEEEEec-ccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCC-CCeeeeEecC
Q psy11036 179 KLLHKFTC-HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYP-SPVLSIDVSM 239 (239)
Q Consensus 179 ~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp 239 (239)
+....+.. +....-.+++..+|++.++....+.|.+||.+.++.+..+..+ ..+++++|.|
T Consensus 215 ~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~ 277 (314)
T d1pjxa_ 215 KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP 277 (314)
T ss_dssp EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECT
T ss_pred eEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeC
Confidence 11111111 2234567999999998888878899999999888888877754 5788899865
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.07 E-value=7.1e-08 Score=72.99 Aligned_cols=168 Identities=12% Similarity=0.115 Sum_probs=104.7
Q ss_pred CCeEEEEEecCCCCEEEEeeC-CCeEEEEeCCCCCcee---ee---cCCCCEEEEEEecCCcEEEEeC--CCcEEEEEcc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSY-DKTVNVYDTRSPDPVM---SV---NHGSPVESVLCLPSGGIFVTGG--GLDVCIWDML 113 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~-dg~v~vw~~~~~~~~~---~~---~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~ 113 (239)
..+.++.|+| ++++++++.. ...|.+|+........ .. ........++|+|+++++++.. +++|.+|++.
T Consensus 145 ~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 145 TGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence 3478999999 7777666653 4578888765433222 11 2456789999999999988777 6899999987
Q ss_pred CCCe-EEEEEe-----------------ccCCceEEEEEcCCCCEEEEEecC------CeEEEEEcccceEeeeecceeE
Q psy11036 114 GGGK-LLHKFT-----------------CHHKTVTSLCLASGGKRLISASLD------HHAKIYEMTLKTVSSFTGGLDV 169 (239)
Q Consensus 114 ~~~~-~~~~~~-----------------~~~~~i~~i~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~i 169 (239)
.... ...... .+......+.++|+|++|+++... ..|..|++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~------------- 290 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR------------- 290 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC-------------
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEec-------------
Confidence 3322 122111 011235678999999998877531 225555544
Q ss_pred EEEEccCCCEEEE-----EEecccCcEEEEEEcc-CCCeEEEE-cCCceEEEEEccCC--eeeEEecCCC
Q psy11036 170 CIWDMLGGGKLLH-----KFTCHHKTVTSLCLAS-GGKRLISA-SLDHHAKIYEMVNF--SPVHTLDYPS 230 (239)
Q Consensus 170 ~~~d~~~~~~~~~-----~~~~h~~~v~~~~~s~-~~~~l~s~-s~d~~i~iwd~~~~--~~~~~~~~~~ 230 (239)
..+.... ...........++++| +|++|+.+ ..++.|.+|++... ..+.++..+.
T Consensus 291 ------~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~vp~ 354 (365)
T d1jofa_ 291 ------DCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRIPE 354 (365)
T ss_dssp ------TTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEECCS
T ss_pred ------CCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEEEECCC
Confidence 1111111 1111223456789998 78988666 56899999987543 4455555444
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.06 E-value=4.4e-07 Score=65.84 Aligned_cols=173 Identities=18% Similarity=0.247 Sum_probs=117.4
Q ss_pred CeEEEEEecCCCCEEEE-eeCCCeEEEEeCCCCCceeee--cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE
Q psy11036 44 YVRAGTVSPVSSDIVIS-GSYDKTVNVYDTRSPDPVMSV--NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s-~~~dg~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~ 119 (239)
....+++.+..+..+++ .+.++.|..++. .++....+ ........++..+++..+++.. .+.+.+++. .++.+
T Consensus 71 ~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~--~g~~~ 147 (279)
T d1q7fa_ 71 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ--NGNVL 147 (279)
T ss_dssp SEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT--TSCEE
T ss_pred ccccccccccccccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc--CCcee
Confidence 34566766634444443 345567777775 46666666 3456678999999998888776 477888876 46666
Q ss_pred EEEe--ccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEc
Q psy11036 120 HKFT--CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLA 197 (239)
Q Consensus 120 ~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s 197 (239)
..+. .+......+++.++++.+++....+.|++||..++.+..+.+ .+.......+++.
T Consensus 148 ~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~-------------------~g~~~~P~giavD 208 (279)
T d1q7fa_ 148 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG-------------------EGITNYPIGVGIN 208 (279)
T ss_dssp EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESC-------------------TTTSCSEEEEEEC
T ss_pred ecccccccccccceeeeccceeEEeeeccccceeeeecCCceeeeecc-------------------cccccCCcccccc
Confidence 6653 345677889999999988888888999999987444333310 1234457789999
Q ss_pred cCCCeEEEEcC-CceEEEEEccCCeeeEEecC---CCCeeeeEecC
Q psy11036 198 SGGKRLISASL-DHHAKIYEMVNFSPVHTLDY---PSPVLSIDVSM 239 (239)
Q Consensus 198 ~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~sp 239 (239)
++|+++++-+. ++.|.+|+. +|+.+.++.. ......+++.|
T Consensus 209 ~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 209 SNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp TTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred cCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeC
Confidence 99998777544 557999984 6888777652 23466666654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=1.5e-08 Score=79.14 Aligned_cols=208 Identities=13% Similarity=0.126 Sum_probs=130.9
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEe---------eCCCeEEEEeCCCCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISG---------SYDKTVNVYDTRSPD 76 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~---------~~dg~v~vw~~~~~~ 76 (239)
.+|.|.+||+.+++....+.... -..-.+....|+| ++++++.. +..+...++|+.+++
T Consensus 35 ~~g~i~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~ 102 (465)
T d1xfda1 35 QKGTVRLWNVETNTSTVLIEGKK-----------IESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGD 102 (465)
T ss_dssp SSSCEEEBCGGGCCCEEEECTTT-----------TTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred CCCcEEEEECCCCCEEEEEcCcc-----------ccccccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence 56889999998887644443332 0013566788999 67776654 345788999999887
Q ss_pred ceeeec---CCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEe-ccCC-----------------ceEEEEEc
Q psy11036 77 PVMSVN---HGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFT-CHHK-----------------TVTSLCLA 135 (239)
Q Consensus 77 ~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~-~~~~-----------------~i~~i~~~ 135 (239)
...... ....+....|+|+|+.+|...++.|.+.+.. .+...+... +..+ .-..+-|+
T Consensus 103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~-~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS 181 (465)
T d1xfda1 103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHV-GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS 181 (465)
T ss_dssp CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSS-SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred eeeccCccCCccccceeeeccCCceEEEEecceEEEEecC-CCceEEEecccCcceeeccccchhhhhhhccccceEEEC
Confidence 644321 3345667899999999999989999988876 444333332 1111 12567899
Q ss_pred CCCCEEEEEec-CCeEEEEEcc--c----ceEeee----ecc----eeEEEEEccCCCEEEEEEe-----cccCcEEEEE
Q psy11036 136 SGGKRLISASL-DHHAKIYEMT--L----KTVSSF----TGG----LDVCIWDMLGGGKLLHKFT-----CHHKTVTSLC 195 (239)
Q Consensus 136 ~~~~~l~~~~~-d~~i~i~d~~--~----~~~~~~----~~~----~~i~~~d~~~~~~~~~~~~-----~h~~~v~~~~ 195 (239)
|||++||.... +..|..+.+. . .....+ .|. ..+.++|+.+......... ....-+..+.
T Consensus 182 PDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~ 261 (465)
T d1xfda1 182 PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK 261 (465)
T ss_dssp TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE
T ss_pred CCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeE
Confidence 99999998764 4555555543 1 111111 222 2478889876433222111 1223467889
Q ss_pred EccCCCeEEEEcC----CceEEEEEccCCeeeEEe
Q psy11036 196 LASGGKRLISASL----DHHAKIYEMVNFSPVHTL 226 (239)
Q Consensus 196 ~s~~~~~l~s~s~----d~~i~iwd~~~~~~~~~~ 226 (239)
|+|++++++.... ...+.++|..+++....+
T Consensus 262 W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~ 296 (465)
T d1xfda1 262 WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (465)
T ss_dssp ESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred EcCCCeEEEEEEccccccceEEEEcCCCCcEEEEE
Confidence 9999987765432 236888999988765443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.04 E-value=7.4e-07 Score=65.19 Aligned_cols=177 Identities=14% Similarity=0.093 Sum_probs=118.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-----CCCCEEEEEEecCCcEEEEeC-----CCcEEEEEc
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-----HGSPVESVLCLPSGGIFVTGG-----GLDVCIWDM 112 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~-----~~~i~~~d~ 112 (239)
..+.++++.+ ++.++++ +.+ .+.++|..+++...... ....+..+.+.|+|++.++.. .+.-.+|.+
T Consensus 59 ~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~ 135 (295)
T d2ghsa1 59 FMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 135 (295)
T ss_dssp SCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence 5688999988 6666654 454 58899999887544332 223578899999999887764 244567777
Q ss_pred cCCCeEEEEEeccCCceEEEEEcCCCCEEE-EEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcE
Q psy11036 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLI-SASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTV 191 (239)
Q Consensus 113 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v 191 (239)
. .++....... -..-..++|+++++.+. +-+..+.|..++++.+..... ..........+..+..
T Consensus 136 ~-~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~------------~~~~~~~~~~~~~g~p 201 (295)
T d2ghsa1 136 A-KGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT------------GKAEVFIDSTGIKGGM 201 (295)
T ss_dssp E-TTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS------------SCCEEEEECTTSSSEE
T ss_pred c-CCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccc------------cceEEEeccCcccccc
Confidence 6 5554444433 34457899999998655 445577888887751110000 0011112222334567
Q ss_pred EEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCC-CCeeeeEe
Q psy11036 192 TSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYP-SPVLSIDV 237 (239)
Q Consensus 192 ~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~ 237 (239)
..+++..+|++.++.-..+.|..||. .|+.+..+..+ ..+++++|
T Consensus 202 dG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~F 247 (295)
T d2ghsa1 202 DGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF 247 (295)
T ss_dssp EEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred cceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEE
Confidence 88999999998887777889999995 78999999866 46899888
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.98 E-value=5.9e-08 Score=69.86 Aligned_cols=153 Identities=9% Similarity=0.024 Sum_probs=102.1
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLH 120 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 120 (239)
....++++.+ +++++++-..+..+..++.......... ........+++++++..+++.. ++.|..++.. ......
T Consensus 98 ~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~-~~~~~~ 175 (260)
T d1rwia_ 98 NYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE-SNNQVV 175 (260)
T ss_dssp CSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTT-TCCEEE
T ss_pred eecccccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccc-cceeee
Confidence 4578999999 7788877666777777776554332221 2234557899999998777766 5889999886 332222
Q ss_pred EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCC
Q psy11036 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG 200 (239)
Q Consensus 121 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~ 200 (239)
...........+++.++|+++++....+.|..++..+.....+ ....-.....|+++++|
T Consensus 176 ~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~--------------------~~~~~~~P~~i~~d~~g 235 (260)
T d1rwia_ 176 LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL--------------------PFTGLNTPLAVAVDSDR 235 (260)
T ss_dssp CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEEC--------------------CCCSCCCEEEEEECTTC
T ss_pred eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEE--------------------ccCCCCCeEEEEEeCCC
Confidence 2223445668899999998888887788888777652111111 01112346789999999
Q ss_pred CeEEEEcCCceEEEEEc
Q psy11036 201 KRLISASLDHHAKIYEM 217 (239)
Q Consensus 201 ~~l~s~s~d~~i~iwd~ 217 (239)
.++++-..+++|+.++.
T Consensus 236 ~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 236 TVYVADRGNDRVVKLTS 252 (260)
T ss_dssp CEEEEEGGGTEEEEECC
T ss_pred CEEEEECCCCEEEEEeC
Confidence 98888777777776543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=2.2e-06 Score=61.29 Aligned_cols=169 Identities=14% Similarity=0.121 Sum_probs=103.6
Q ss_pred eEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--C--CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEE
Q psy11036 66 TVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--G--LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141 (239)
Q Consensus 66 ~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 141 (239)
.|.+.|...............+..-+|+|||+.||... . ..+.+.+.. +.....+..+........|+|+|+.+
T Consensus 20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA--NGAVRQVASFPRHNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--TCCEEEEECCSSCEEEEEECTTSSEE
T ss_pred EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecc--cCceeEEeeeecccccceecCCCCee
Confidence 57787877555555556778889999999999998765 2 345566664 44455566678888999999999988
Q ss_pred EEEec-CCeEEEEEcc---cceEeee------------------------ecceeEEEEEccCCCEEEEEEecccCcEEE
Q psy11036 142 ISASL-DHHAKIYEMT---LKTVSSF------------------------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTS 193 (239)
Q Consensus 142 ~~~~~-d~~i~i~d~~---~~~~~~~------------------------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~ 193 (239)
+.... ++...++... ....... .+..++...+...... ..+..+......
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~--~~~~~~~~~~~~ 175 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP--QRITWEGSQNQD 175 (269)
T ss_dssp EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC--EECCCSSSEEEE
T ss_pred eEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc--eeeecccccccc
Confidence 87654 3332222222 1111111 1233455555544322 223344556777
Q ss_pred EEEccCCCeEEEEcCC-ce--EEEEEccCCeeeEEecCCCCeeeeEecC
Q psy11036 194 LCLASGGKRLISASLD-HH--AKIYEMVNFSPVHTLDYPSPVLSIDVSM 239 (239)
Q Consensus 194 ~~~s~~~~~l~s~s~d-~~--i~iwd~~~~~~~~~~~~~~~v~~~~~sp 239 (239)
..|+|+++.++..+.+ +. +.+.+...+. ...+..........|||
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~p~~SP 223 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLSSTFLDETPSLAP 223 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCC-EEECCCSSSCEEEEECT
T ss_pred cccccccceeEEEeecCCceeeeEeeccccc-ceEeecCccccceEECC
Confidence 8999999988776543 34 4445554443 34444555667778887
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.79 E-value=4.5e-06 Score=61.51 Aligned_cols=152 Identities=9% Similarity=0.139 Sum_probs=98.4
Q ss_pred eEEEEEecCCCCEEEEeeC---------------CCeEEEEeCCCCCceeeecCCCCEEEEEEecCCc----EEEEeC--
Q psy11036 45 VRAGTVSPVSSDIVISGSY---------------DKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGG----IFVTGG-- 103 (239)
Q Consensus 45 v~~~~~~~~~~~~l~s~~~---------------dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~~~~-- 103 (239)
...+++.+ ++++.++-.. +|.|..++. .++.......-...+.++|+|++. .|+++.
T Consensus 119 pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~ 196 (314)
T d1pjxa_ 119 CNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP 196 (314)
T ss_dssp CCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred CcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCCcceeeeeEECCCCCcceeEEEEEeec
Confidence 56789999 6887776322 234444443 233333333334457889998764 455443
Q ss_pred CCcEEEEEccCCCeEEE-----EEec-cCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCC
Q psy11036 104 GLDVCIWDMLGGGKLLH-----KFTC-HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGG 177 (239)
Q Consensus 104 ~~~i~~~d~~~~~~~~~-----~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~ 177 (239)
.+.|..|++...+.... .+.. .......+++.++|+..++....+.|.+||.+ .
T Consensus 197 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~--------------------~ 256 (314)
T d1pjxa_ 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD--------------------G 256 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT--------------------C
T ss_pred ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC--------------------C
Confidence 58899998874444322 1111 12345689999999988888788899998876 2
Q ss_pred CEEEEEEecccCcEEEEEEccCCC-eEEEEcCCceEEEEEcc
Q psy11036 178 GKLLHKFTCHHKTVTSLCLASGGK-RLISASLDHHAKIYEMV 218 (239)
Q Consensus 178 ~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~i~iwd~~ 218 (239)
++....+.......++++|.|+++ ++++.+.++.|..+++.
T Consensus 257 g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 257 GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 333344455556788999999987 55777788988888874
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.72 E-value=3.2e-06 Score=60.70 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=61.2
Q ss_pred EecCC--CCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--CC-----cEEEEEccCCCeEEE
Q psy11036 50 VSPVS--SDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--GL-----DVCIWDMLGGGKLLH 120 (239)
Q Consensus 50 ~~~~~--~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~-----~i~~~d~~~~~~~~~ 120 (239)
.+| + ++.++-.+ ++.|.+.|+.+++........+.+...+|+|||+.|+... ++ .|.+++.. .++. .
T Consensus 6 ~sP-di~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~-~g~~-~ 81 (281)
T d1k32a2 6 LNP-DIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE-NGEI-K 81 (281)
T ss_dssp EEE-EEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT-TTEE-E
T ss_pred cCC-CCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEec-CCce-E
Confidence 466 4 66665443 4678888999887665446778889999999999988654 21 35666665 3333 3
Q ss_pred EEecc-------CCceEEEEEcCCCCEEEEEe
Q psy11036 121 KFTCH-------HKTVTSLCLASGGKRLISAS 145 (239)
Q Consensus 121 ~~~~~-------~~~i~~i~~~~~~~~l~~~~ 145 (239)
.+..+ ........|+|+|+.|+...
T Consensus 82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp ECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred EeeecCCCccCccccccccccCCCCCEEEEEE
Confidence 33211 22456788999999887643
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.71 E-value=6.4e-06 Score=60.77 Aligned_cols=154 Identities=8% Similarity=0.069 Sum_probs=97.4
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC-C--CcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG-G--LDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~--~~i~~~d~~~~~~~ 118 (239)
..+..++|.+ +++++++-..++.|..|+..+++....+ ........++++++|+++++.. + ....++.+......
T Consensus 40 ~~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 40 LQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred cCcEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence 4567999999 6888888778899999998877655544 5666789999999999887764 2 23334433323332
Q ss_pred EEEEecc---CCceEEEEEcCCCCEEEEEecC------CeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccC
Q psy11036 119 LHKFTCH---HKTVTSLCLASGGKRLISASLD------HHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHK 189 (239)
Q Consensus 119 ~~~~~~~---~~~i~~i~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~ 189 (239)
+.....+ ......+++.++|++.++.... +.+..++.. ...+..+...-.
T Consensus 119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d---------------------g~~~~~~~~~~~ 177 (319)
T d2dg1a1 119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD---------------------FRTVTPIIQNIS 177 (319)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT---------------------SCCEEEEEEEES
T ss_pred eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc---------------------cceeEEEeeccc
Confidence 3222222 2346788999999866653221 112222222 222222222233
Q ss_pred cEEEEEEccCCCeE-EEEcCCceEEEEEcc
Q psy11036 190 TVTSLCLASGGKRL-ISASLDHHAKIYEMV 218 (239)
Q Consensus 190 ~v~~~~~s~~~~~l-~s~s~d~~i~iwd~~ 218 (239)
....++|+|+++.| ++-+..+.|+.|++.
T Consensus 178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~ 207 (319)
T d2dg1a1 178 VANGIALSTDEKVLWVTETTANRLHRIALE 207 (319)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred eeeeeeeccccceEEEecccCCceEEEEEc
Confidence 45789999999865 555678899999875
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.66 E-value=3.2e-06 Score=63.66 Aligned_cols=160 Identities=9% Similarity=0.017 Sum_probs=95.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee---cCCCCEEEEEEecCCcE--EEEeC--CCcEEEEEccCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV---NHGSPVESVLCLPSGGI--FVTGG--GLDVCIWDMLGG 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---~~~~~v~~~~~~~~~~~--l~~~~--~~~i~~~d~~~~ 115 (239)
..+.-|+++| +++.|.+... +.+..|.+......... ........+.++++++. ++++. .+.+..+.+...
T Consensus 40 ~~~s~la~s~-d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~ 117 (365)
T d1jofa_ 40 EPISWMTFDH-ERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECT-TSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCEEEEcC-CCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence 4566799999 7887777654 56777877543322222 23344556777888874 33333 355665544322
Q ss_pred CeEEE------------EE----eccCCceEEEEEcCCCCEEEEEec-CCeEEEEEcccceEeeeecceeEEEEEccCCC
Q psy11036 116 GKLLH------------KF----TCHHKTVTSLCLASGGKRLISASL-DHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178 (239)
Q Consensus 116 ~~~~~------------~~----~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~ 178 (239)
+.... .. ......+.++.|+|+|++++++.. ...|.+|+....- ..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g-----------------~~ 180 (365)
T d1jofa_ 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG-----------------EV 180 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-----------------CE
T ss_pred CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCC-----------------ce
Confidence 11111 11 112234689999999998888764 3567777655100 01
Q ss_pred EEEEEE--ecccCcEEEEEEccCCCeEEEE-cCCceEEEEEccCCe
Q psy11036 179 KLLHKF--TCHHKTVTSLCLASGGKRLISA-SLDHHAKIYEMVNFS 221 (239)
Q Consensus 179 ~~~~~~--~~h~~~v~~~~~s~~~~~l~s~-s~d~~i~iwd~~~~~ 221 (239)
...... .........++|+|+++++... -.+++|.+|++...+
T Consensus 181 ~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~ 226 (365)
T d1jofa_ 181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred eeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence 111111 1234568899999999988554 468999999987654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.57 E-value=9.8e-06 Score=59.21 Aligned_cols=125 Identities=15% Similarity=0.117 Sum_probs=90.5
Q ss_pred ceeeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEc
Q psy11036 77 PVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 155 (239)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 155 (239)
.+..+.....+..+++.|+|+++++.. +++|..++.. ++ ...+......+.+++|+++|+.+++...++.+..++.
T Consensus 20 v~~~~p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~--g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~ 96 (302)
T d2p4oa1 20 IITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPD--GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL 96 (302)
T ss_dssp EEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred EEEECCCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCC--CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence 344454455688999999999988877 6888888764 33 3334456678999999999999999888888888776
Q ss_pred ccceEeeeecceeEEEEEccCCCEEEE-EEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCee
Q psy11036 156 TLKTVSSFTGGLDVCIWDMLGGGKLLH-KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSP 222 (239)
Q Consensus 156 ~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~ 222 (239)
.. ....... ...........+++.++++++++.+.++.+..++...+..
T Consensus 97 ~~------------------~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~ 146 (302)
T d2p4oa1 97 VK------------------SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 146 (302)
T ss_dssp EC------------------TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred cc------------------cccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcc
Confidence 51 0111111 1122345678899999999999999999999998877654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.44 E-value=0.0001 Score=53.55 Aligned_cols=142 Identities=12% Similarity=0.072 Sum_probs=93.3
Q ss_pred CeEEEEEecCCCCEEEEeeC----CCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCC-
Q psy11036 44 YVRAGTVSPVSSDIVISGSY----DKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGG- 116 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~----dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~- 116 (239)
.+..+.+.| ++++.++... .+.-.+|.+..++.......-.....++|+++++.++.+. .+.|..|++....
T Consensus 104 ~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~ 182 (295)
T d2ghsa1 104 RSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG 182 (295)
T ss_dssp EEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred cceeeEECC-CCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeeccccc
Confidence 577888888 6776665432 2344566666665444444344567899999998776665 5888888875221
Q ss_pred ------eEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCc
Q psy11036 117 ------KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKT 190 (239)
Q Consensus 117 ------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~ 190 (239)
..........+....+++..+|++.++.-..+.|..||.+ ++.+..+.-....
T Consensus 183 ~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~---------------------G~~~~~i~lP~~~ 241 (295)
T d2ghsa1 183 LPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD---------------------GNHIARYEVPGKQ 241 (295)
T ss_dssp CBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT---------------------CCEEEEEECSCSB
T ss_pred ccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC---------------------CcEeeEecCCCCc
Confidence 1122223344567889999999988887778889988866 4445555554566
Q ss_pred EEEEEEc-cCCCeE-EEEc
Q psy11036 191 VTSLCLA-SGGKRL-ISAS 207 (239)
Q Consensus 191 v~~~~~s-~~~~~l-~s~s 207 (239)
+++++|- +|.+.| +|.+
T Consensus 242 ~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 242 TTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp EEEEEEESTTSCEEEEEEB
T ss_pred eEEEEEeCCCCCEEEEEEC
Confidence 8999996 565555 4444
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.42 E-value=0.0001 Score=52.69 Aligned_cols=184 Identities=11% Similarity=0.128 Sum_probs=126.3
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEEccCCCeEEEEEeccC
Q psy11036 47 AGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLHKFTCHH 126 (239)
Q Consensus 47 ~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~ 126 (239)
+.-.+| ..+.|+.-+ ..++.++|+++.+.+..+...++|.--.|- +.+.|+...+..|.-|+++....+.+.+..|.
T Consensus 67 sAIMhP-~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWi-s~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~ 143 (327)
T d1utca2 67 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNTVALVTDNAVYHWSMEGESQPVKMFDRHS 143 (327)
T ss_dssp EEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEES-SSSEEEEECSSEEEEEESSSSCCCEEEEECCG
T ss_pred hhhcCC-CCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEec-CCCEEEEEcCCceEEEcccCCCCchhhhhhcc
Confidence 556778 677776655 568999999999998888777888777776 45677888888999999975566777777654
Q ss_pred ----CceEEEEEcCCCCEEEEEe-------cCCeEEEEEcccceEeeee----------------------------cce
Q psy11036 127 ----KTVTSLCLASGGKRLISAS-------LDHHAKIYEMTLKTVSSFT----------------------------GGL 167 (239)
Q Consensus 127 ----~~i~~i~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~----------------------------~~~ 167 (239)
..|..-..++++++++..+ -.|.+.+|..+.+..+.+. ..+
T Consensus 144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~ 223 (327)
T d1utca2 144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 223 (327)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEE
T ss_pred cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCc
Confidence 3677778889999877654 2477889988733333221 123
Q ss_pred eEEEEEccCCC---EE-----EEEEec---ccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEec-CCCCee
Q psy11036 168 DVCIWDMLGGG---KL-----LHKFTC---HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPSPVL 233 (239)
Q Consensus 168 ~i~~~d~~~~~---~~-----~~~~~~---h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~ 233 (239)
.+.+.++.... .+ +..+-. ...-..++..|+....+..-+.-|.|.+||++++.++..-+ ...+|.
T Consensus 224 kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF 301 (327)
T d1utca2 224 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 301 (327)
T ss_dssp EEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceE
Confidence 35566554311 10 111111 12234577778777788888899999999999999988766 344443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.36 E-value=0.00014 Score=51.80 Aligned_cols=172 Identities=8% Similarity=-0.029 Sum_probs=107.1
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCCCEEEEEEecCCcEEEEeC--CCc--EEEEEccCCCe
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG--GLD--VCIWDMLGGGK 117 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~--i~~~d~~~~~~ 117 (239)
..+.++++...++++..+-...+.|.+.++........+. ....+..++++|...+++... .+. |.--++. ...
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d-G~~ 157 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTN 157 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCC
T ss_pred ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC-CCC
Confidence 5688999987455566666677899999987655433332 346789999999777776554 233 4444554 222
Q ss_pred EEEEEeccCCceEEEEEcCCCCEEEEE-ecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEE
Q psy11036 118 LLHKFTCHHKTVTSLCLASGGKRLISA-SLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL 196 (239)
Q Consensus 118 ~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~ 196 (239)
........-.....+++.+.++.|..+ ...+.|...++++.. ....+.+-.. ..+|++
T Consensus 158 ~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~--------------------~~~v~~~~~~-P~~lav 216 (263)
T d1npea_ 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG--------------------RRKVLEGLQY-PFAVTS 216 (263)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE--------------------EEEEEECCCS-EEEEEE
T ss_pred ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC--------------------eEEEECCCCC-cEEEEE
Confidence 222233333456889998877766555 456788888777221 1111222222 346777
Q ss_pred ccCCCeEEEEcCCceEEEEEccCCeeeEEec--CCCCeeeeEe
Q psy11036 197 ASGGKRLISASLDHHAKIYEMVNFSPVHTLD--YPSPVLSIDV 237 (239)
Q Consensus 197 s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~ 237 (239)
. ++.+..+-...+.|...|..+++.+..+. .......+++
T Consensus 217 ~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v 258 (263)
T d1npea_ 217 Y-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITI 258 (263)
T ss_dssp E-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEE
T ss_pred E-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEE
Confidence 5 44555666678899999999999887764 2334445554
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.09 E-value=0.00011 Score=52.26 Aligned_cols=116 Identities=14% Similarity=0.074 Sum_probs=70.8
Q ss_pred EEecC--CcEEEEeCCCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEec-CC-----eEEEEEcccceEee
Q psy11036 91 LCLPS--GGIFVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL-DH-----HAKIYEMTLKTVSS 162 (239)
Q Consensus 91 ~~~~~--~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~-----~i~i~d~~~~~~~~ 162 (239)
..+|+ |+.++...++.|.++|+. .++ ...+..+.+.+...+|+|||+.|+.... ++ .|.+++..+.....
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~-~g~-~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLK-SGS-TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETT-TCC-EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECC-CCC-EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 45788 999998888889889997 444 4566667788899999999999886542 22 24444444222222
Q ss_pred eecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcC------CceEEEEEccCCee
Q psy11036 163 FTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASL------DHHAKIYEMVNFSP 222 (239)
Q Consensus 163 ~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~------d~~i~iwd~~~~~~ 222 (239)
++.. . ..............|+|+|+.|+.... ...+...+...++.
T Consensus 83 lt~~-----------~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (281)
T d1k32a2 83 ITYF-----------S---GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF 134 (281)
T ss_dssp CCCC-----------C---EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred eeec-----------C---CCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence 2100 0 001112233567789999998876532 22355556555443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=5.8e-06 Score=64.28 Aligned_cols=105 Identities=7% Similarity=0.006 Sum_probs=72.9
Q ss_pred EEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec----CCCCEEEEEEecCCcEEEEeC----------CCcEEEEEcc
Q psy11036 48 GTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN----HGSPVESVLCLPSGGIFVTGG----------GLDVCIWDML 113 (239)
Q Consensus 48 ~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~----------~~~i~~~d~~ 113 (239)
..|.+ ++.++. -..+|.+.+||+.+++....+. ....+....++|++++++... .+.+.++|+.
T Consensus 22 ~~W~~-~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~ 99 (465)
T d1xfda1 22 AKWIS-DTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (465)
T ss_dssp CCBSS-SSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred CEEeC-CCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence 46887 566554 3567899999999887654442 234667788999999887764 2568899997
Q ss_pred CCCeEEEEE--eccCCceEEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 114 GGGKLLHKF--TCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 114 ~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
.+...... ......+....|+|||+.+|-.. ++.+.+.+..
T Consensus 100 -~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~ 142 (465)
T d1xfda1 100 -HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHV 142 (465)
T ss_dssp -SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSS
T ss_pred -CCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecC
Confidence 44432221 12234566688999999988874 6778887776
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.94 E-value=0.0017 Score=48.87 Aligned_cols=215 Identities=9% Similarity=0.029 Sum_probs=125.5
Q ss_pred CCCCCCCCEEEEeeCCCcceeeeeeCCce----eeccceee---------------ccC------CCCCeE--EEEEec-
Q psy11036 1 MSHDLPILIVALWDIPSEAQVSTFTNHTT----IYKVPLML---------------YST------PQDYVR--AGTVSP- 52 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~---------------~~~------~~~~v~--~~~~~~- 52 (239)
|++.|..|.|+|+-+.+++.+..+..... -|+..... +.. ..+... .+.+..
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG 95 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 95 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence 67788899999999999998887754331 12211100 000 011122 333331
Q ss_pred -CCCCEEEE-eeCCCeEEEEeCCCCCcee--eecCCCCEEEEEEec--CCcEEEEeCC-------------------CcE
Q psy11036 53 -VSSDIVIS-GSYDKTVNVYDTRSPDPVM--SVNHGSPVESVLCLP--SGGIFVTGGG-------------------LDV 107 (239)
Q Consensus 53 -~~~~~l~s-~~~dg~v~vw~~~~~~~~~--~~~~~~~v~~~~~~~--~~~~l~~~~~-------------------~~i 107 (239)
.+|++++. -..+.+|.+-|+++.+... .++....+..++..+ +..+++..+. +.+
T Consensus 96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~ 175 (459)
T d1fwxa2 96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 175 (459)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence 03455554 4577899999999988755 445666777777654 5556666542 225
Q ss_pred EEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCC---------------eEEEEEcc-cceEeeeecc----e
Q psy11036 108 CIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDH---------------HAKIYEMT-LKTVSSFTGG----L 167 (239)
Q Consensus 108 ~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---------------~i~i~d~~-~~~~~~~~~~----~ 167 (239)
...|.. +.+...++.. .+....+.++++|+++++.+.+. .+.+++.. .+.. .-.|. .
T Consensus 176 t~ID~~-tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~a-v~~Gk~~ein 252 (459)
T d1fwxa2 176 TAVDAD-KWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA-IAAGDYQELN 252 (459)
T ss_dssp EEEETT-TTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH-HHHTCSEEET
T ss_pred EEEecC-CceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHh-hhcCCcEEeC
Confidence 677887 5555555542 34567899999999988876432 23344443 0000 00011 1
Q ss_pred eEEEEEccCC--CEEEEEEecccCcEEEEEEccCCCeEEEEc-CCceEEEEEccC
Q psy11036 168 DVCIWDMLGG--GKLLHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMVN 219 (239)
Q Consensus 168 ~i~~~d~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~d~~i~iwd~~~ 219 (239)
.+.+-|.+.. ......+.. ......+.++|||+++++++ .+.++.|+|++.
T Consensus 253 gV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K 306 (459)
T d1fwxa2 253 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 306 (459)
T ss_dssp TEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred CceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence 2556666542 122222322 23355789999999987665 589999999863
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.93 E-value=0.0013 Score=49.39 Aligned_cols=194 Identities=11% Similarity=0.041 Sum_probs=116.2
Q ss_pred CCCCCCCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecC-CCCEEEEeeCC---------------
Q psy11036 1 MSHDLPILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV-SSDIVISGSYD--------------- 64 (239)
Q Consensus 1 fs~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d--------------- 64 (239)
|..|..+..|.+-|+++.+..+.+..... ..+..+...++ +..+++.++.+
T Consensus 103 FVNDkan~RVAvIdl~~fkt~kIi~iPn~-------------~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~ 169 (459)
T d1fwxa2 103 FMNDKANTRVARVRCDVMKCDAILEIPNA-------------KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA 169 (459)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSC-------------CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred EEEcCCCceEEEEECcceeeeEEEecCCC-------------CCCceeecccCCCeEEEEccCccccccCCCCccccchh
Confidence 34556778899999998887665544321 45666666542 34566665553
Q ss_pred ---CeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-C-C--------------cEEEEEc-------------
Q psy11036 65 ---KTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-G-L--------------DVCIWDM------------- 112 (239)
Q Consensus 65 ---g~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-~--------------~i~~~d~------------- 112 (239)
+.+.+.|..+.+....+...+....+.++++|+++++.+ + . .+.+++.
T Consensus 170 ~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ 249 (459)
T d1fwxa2 170 NYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 249 (459)
T ss_dssp -EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred hcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcE
Confidence 236678988888777765556677899999999998875 2 1 1333333
Q ss_pred ----------cC--CCeEEEEEeccCCceEEEEEcCCCCEEEEEe-cCCeEEEEEcc-cceEeeeecceeEEEEEccCCC
Q psy11036 113 ----------LG--GGKLLHKFTCHHKTVTSLCLASGGKRLISAS-LDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGG 178 (239)
Q Consensus 113 ----------~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~ 178 (239)
+. ....+..+.... ....+..+|||+++++++ .+.++.++|++ ...+.. +.. |.+ .
T Consensus 250 eingV~VVD~~~~~~~~v~~yIPVpK-sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~--~~~-----~~~--~ 319 (459)
T d1fwxa2 250 ELNGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY--ENA-----DPR--S 319 (459)
T ss_dssp EETTEEEEECSGG--CSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH--SCC------GG--G
T ss_pred EeCCceeecccccCCcceeEEEecCC-CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhc--ccC-----Ccc--c
Confidence 21 111222233222 246788999999877655 58999999997 111100 000 000 0
Q ss_pred EEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEcc
Q psy11036 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMV 218 (239)
Q Consensus 179 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~ 218 (239)
......+ ..-.-..-+|...|.-..|---|..|.-|++.
T Consensus 320 ~~~~e~e-lglgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 320 AVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp GEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred cEEeecc-cCcCccccccCCCceEEEEeeccceEEEEecc
Confidence 1111111 22334566788888666666689999999985
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.0029 Score=44.81 Aligned_cols=164 Identities=16% Similarity=0.043 Sum_probs=103.8
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee-cCCCCEEEEEEecCCcEEEEeC---CCcEEEEEccCCCeE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGG---GLDVCIWDMLGGGKL 118 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~---~~~i~~~d~~~~~~~ 118 (239)
..+.++++.+.++++..+-...+.|.+.++........+ ........++.+|...+++... .+.|.-.++. +..
T Consensus 77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d--Gs~ 154 (266)
T d1ijqa1 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVD 154 (266)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCC
T ss_pred CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccC--CCc
Confidence 456688988756667777677789999998866544433 4456788999999666665544 3556666775 333
Q ss_pred EEEE-eccCCceEEEEEcCCCCEEEEE-ecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEE
Q psy11036 119 LHKF-TCHHKTVTSLCLASGGKRLISA-SLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL 196 (239)
Q Consensus 119 ~~~~-~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~ 196 (239)
...+ ...-.....+++.+.++.|..+ ...+.|...++.+. ....+...........++++
T Consensus 155 ~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~------------------~~~~~~~~~~~~~~p~~lav 216 (266)
T d1ijqa1 155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------------NRKTILEDEKRLAHPFSLAV 216 (266)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------------SCEEEEECTTTTSSEEEEEE
T ss_pred eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCC------------------CEEEEEeCCCcccccEEEEE
Confidence 3333 3333567899999877766655 44577777776621 11111111222233556777
Q ss_pred ccCCCeEEEEcCCceEEEEEccCCeeeEEec
Q psy11036 197 ASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227 (239)
Q Consensus 197 s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 227 (239)
. ++.+..+-..++.|...+..+++....+.
T Consensus 217 ~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 217 F-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (266)
T ss_dssp E-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred E-CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence 6 34555565678899888988887776665
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.68 E-value=0.0038 Score=44.14 Aligned_cols=158 Identities=9% Similarity=-0.029 Sum_probs=94.4
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeec-CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLL 119 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~ 119 (239)
..+.+++|.+.++.++.+-..++.|+..++........+. ....+..+++..-+..++.+. .+.|.+.++. .....
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d-g~~~~ 114 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRR 114 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCE
T ss_pred CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecC-CceEE
Confidence 4578899998444455555667889998987665544442 335789999998676666554 5889999987 33322
Q ss_pred EEEeccCCceEEEEEcCCCCEEEEEecC-CeEEEE--EcccceEeeeecceeEEEEEccCCCEEEEEEecccCcEEEEEE
Q psy11036 120 HKFTCHHKTVTSLCLASGGKRLISASLD-HHAKIY--EMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCL 196 (239)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~~i~i~--d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~ 196 (239)
..+.........++++|...++...... +..+|+ ++++. .........-.....|++
T Consensus 115 ~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~--------------------~~~~i~~~~~~~P~glai 174 (263)
T d1npea_ 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--------------------NRRILAQDNLGLPNGLTF 174 (263)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--------------------CCEEEECTTCSCEEEEEE
T ss_pred EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC--------------------CceeeeeecccccceEEE
Confidence 2333334678899999977666644322 222333 44311 111111122234567777
Q ss_pred ccCCCeE-EEEcCCceEEEEEccCCe
Q psy11036 197 ASGGKRL-ISASLDHHAKIYEMVNFS 221 (239)
Q Consensus 197 s~~~~~l-~s~s~d~~i~iwd~~~~~ 221 (239)
.+.++.| .+-...+.|...++....
T Consensus 175 D~~~~~lYw~d~~~~~I~~~~~~g~~ 200 (263)
T d1npea_ 175 DAFSSQLCWVDAGTHRAECLNPAQPG 200 (263)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred eecCcEEEEEeCCCCEEEEEECCCCC
Confidence 7665555 343556777777775433
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.011 Score=41.61 Aligned_cols=133 Identities=10% Similarity=-0.090 Sum_probs=81.1
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC----ceeee-c
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPD----PVMSV-N 82 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~----~~~~~-~ 82 (239)
..|+..++++.+....+. .. ..+.+++|++.++.+..+-...+.|..-++.... ....+ .
T Consensus 10 ~~I~~~~l~~~~~~~~~~-~~--------------~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~ 74 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIP-NL--------------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 74 (266)
T ss_dssp SSEEEEETTSCCCEEEEC-SC--------------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred CeEEEEECCCCcceeeeC-CC--------------CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeC
Confidence 357778887655433333 33 5678999998444455554566777776664321 11122 2
Q ss_pred CCCCEEEEEEecCCcEEEEeC--CCcEEEEEccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEe--cCCeEEEEEcc
Q psy11036 83 HGSPVESVLCLPSGGIFVTGG--GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS--LDHHAKIYEMT 156 (239)
Q Consensus 83 ~~~~v~~~~~~~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~d~~i~i~d~~ 156 (239)
....+..+++.+.+..++.+. .+.|.+.++. .................++++|...+|.... ..+.|.-.++.
T Consensus 75 ~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~-g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d 151 (266)
T d1ijqa1 75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (266)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCCCcceEEEeeccceEEEEecCCCEEEeEecC-CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccC
Confidence 335577899988777777665 4889999997 4444444555556778999998665555443 33455555555
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.98 E-value=0.054 Score=42.57 Aligned_cols=165 Identities=12% Similarity=0.001 Sum_probs=91.2
Q ss_pred CeEEEEeCCCCCceeeec---C-------CCCEEEEEEecCCc---EEEEeC-CCcEEEEEccCCCeEEEEEeccC----
Q psy11036 65 KTVNVYDTRSPDPVMSVN---H-------GSPVESVLCLPSGG---IFVTGG-GLDVCIWDMLGGGKLLHKFTCHH---- 126 (239)
Q Consensus 65 g~v~vw~~~~~~~~~~~~---~-------~~~v~~~~~~~~~~---~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~---- 126 (239)
..+...|.++++.+..++ | ..+........+++ .++..+ +|.+.++|.. +++++...+...
T Consensus 272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~-tG~~i~~~~~~~~~~~ 350 (571)
T d2ad6a1 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE-NGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT-TCCEEEEEESSTTCCS
T ss_pred cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecC-CCcEeeeeccCCcccc
Confidence 467788999998776552 1 12222223333444 233444 6889999887 666554322110
Q ss_pred ---------------------------------C--ceEEEEEcCCCCEEEEEecCCeEEEEEcc--cc--------eEe
Q psy11036 127 ---------------------------------K--TVTSLCLASGGKRLISASLDHHAKIYEMT--LK--------TVS 161 (239)
Q Consensus 127 ---------------------------------~--~i~~i~~~~~~~~l~~~~~d~~i~i~d~~--~~--------~~~ 161 (239)
+ .=...+++|+...+.....+....+.... .+ ...
T Consensus 351 ~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (571)
T d2ad6a1 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccccccee
Confidence 0 00125677777777776665544333221 00 000
Q ss_pred ee--------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCCe
Q psy11036 162 SF--------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPV 232 (239)
Q Consensus 162 ~~--------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v 232 (239)
.. ...+.+.-+|+.+....-....+ .+..+-.++-.+.+++.|+.||.++-+|.++|+.+.+++.+..+
T Consensus 431 ~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~--~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~ 507 (571)
T d2ad6a1 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG 507 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred eccccCCcccCCcccEEEeccCCCceeeEcCCC--CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCc
Confidence 01 11245888888874443332222 11111112234668888999999999999999999998855433
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.91 E-value=0.034 Score=40.97 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=68.0
Q ss_pred CeEEEEEecCCCCEEEEeeCCC-----------eEEEEeCCCCCceee--e--cCCCCEEEEEEecCCcEEEEeC-C-Cc
Q psy11036 44 YVRAGTVSPVSSDIVISGSYDK-----------TVNVYDTRSPDPVMS--V--NHGSPVESVLCLPSGGIFVTGG-G-LD 106 (239)
Q Consensus 44 ~v~~~~~~~~~~~~l~s~~~dg-----------~v~vw~~~~~~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~-~-~~ 106 (239)
++....... ++++++.|+.+. .+.+||..+++.... + .+.......++.+++++++.|+ + ..
T Consensus 21 ~~~~a~~~~-~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~ 99 (387)
T d1k3ia3 21 PAAAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK 99 (387)
T ss_dssp CSEEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred ccEEEEEee-CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcc
Confidence 333333333 788888877531 377999998864332 2 2333344667889999999887 3 78
Q ss_pred EEEEEccCCCeEEEEEecc--CCceEEEEEcCCCCEEEEEecC------CeEEEEEcc
Q psy11036 107 VCIWDMLGGGKLLHKFTCH--HKTVTSLCLASGGKRLISASLD------HHAKIYEMT 156 (239)
Q Consensus 107 i~~~d~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d------~~i~i~d~~ 156 (239)
+.+||.. ...- ...... ...-...+..+||+.++.++.+ ..+.+||..
T Consensus 100 ~~~yd~~-~~~w-~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~ 155 (387)
T d1k3ia3 100 TSLYDSS-SDSW-IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 155 (387)
T ss_dssp EEEEEGG-GTEE-EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred eeEecCc-cCcc-cccccccccccccceeeecCCceeeeccccccccccceeeeecCC
Confidence 9999997 3332 222211 1122356667789988888753 346667766
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.73 E-value=0.039 Score=40.32 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=24.9
Q ss_pred CcEEEEEEccCCCeEEEE-cCCceEEEEEccCC
Q psy11036 189 KTVTSLCLASGGKRLISA-SLDHHAKIYEMVNF 220 (239)
Q Consensus 189 ~~v~~~~~s~~~~~l~s~-s~d~~i~iwd~~~~ 220 (239)
.....++++||+++|+.+ +..++|++|++...
T Consensus 206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 206 DFANGINISPDGKYVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence 457889999999877544 56789999998643
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.58 E-value=0.11 Score=40.62 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=42.6
Q ss_pred eeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCCC
Q psy11036 167 LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSP 231 (239)
Q Consensus 167 ~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~ 231 (239)
+.+.-+|+.+ ++.+-.... ..+...-.++-.+.+++.|+.||.++.+|.++|+.+.+++.+..
T Consensus 438 G~l~A~D~~t-Gk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~ 500 (560)
T d1kv9a2 438 GALLAWDPVK-QKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG 500 (560)
T ss_dssp EEEEEEETTT-TEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cceEEEeCCC-CeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCC
Confidence 4578889887 444433322 12222222334577888999999999999999999999885443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.57 E-value=0.068 Score=38.02 Aligned_cols=185 Identities=11% Similarity=0.071 Sum_probs=108.7
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCC-Cceeee-c---
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSP-DPVMSV-N--- 82 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~-~--- 82 (239)
..+.++|+++.+.++.+.-. ++|.-=.|-. .+.|+--+. ..|+-|+++.. .+.+.+ .
T Consensus 83 ~~LQiFnletK~klks~~~~---------------e~VvfWkWis--~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~ 144 (327)
T d1utca2 83 KTLQIFNIEMKSKMKAHTMT---------------DDVTFWKWIS--LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSS 144 (327)
T ss_dssp TEEEEEETTTTEEEEEEECS---------------SCCCEEEESS--SSEEEEECS-SEEEEEESSSSCCCEEEEECCGG
T ss_pred CeEEEEehhHhhhhceEEcC---------------CCcEEEEecC--CCEEEEEcC-CceEEEcccCCCCchhhhhhccc
Confidence 46788888888877777766 4565556654 455544433 57999999543 455555 2
Q ss_pred -CCCCEEEEEEecCCcEEEEeC----C----CcEEEEEccCCCeEEEEEeccCCceEEEEEcCCC---CEEEEEe---cC
Q psy11036 83 -HGSPVESVLCLPSGGIFVTGG----G----LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGG---KRLISAS---LD 147 (239)
Q Consensus 83 -~~~~v~~~~~~~~~~~l~~~~----~----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~---~d 147 (239)
....|.....+++.++++..+ + |.+.+|..+ .+..+.+.+|.+....+.+.-+. ..++.+. ..
T Consensus 145 L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e--r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~ 222 (327)
T d1utca2 145 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 222 (327)
T ss_dssp GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT--TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec--cCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCC
Confidence 245678888899999888765 2 678899985 56667777776655444442211 2233222 23
Q ss_pred CeEEEEEccc-c----------------------------------eEeeeecceeEEEEEccCCCEEEEEEecccCcEE
Q psy11036 148 HHAKIYEMTL-K----------------------------------TVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVT 192 (239)
Q Consensus 148 ~~i~i~d~~~-~----------------------------------~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v~ 192 (239)
+.++|.++.. . .+..++..+-+.+||+++ +.++..-+-....|.
T Consensus 223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleT-gt~i~~nRIs~~~iF 301 (327)
T d1utca2 223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRISGETIF 301 (327)
T ss_dssp EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEE
T ss_pred cEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEccc-ccEEEEeecCCCceE
Confidence 5777777651 1 111114566688999887 444444444445555
Q ss_pred EEEEccCCCeEEEEcCCceEE
Q psy11036 193 SLCLASGGKRLISASLDHHAK 213 (239)
Q Consensus 193 ~~~~s~~~~~l~s~s~d~~i~ 213 (239)
..+-..+..=+++...+|.|.
T Consensus 302 ~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 302 VTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp EEEEETTTTEEEEEETTSEEE
T ss_pred EeccCCCCceEEEECCCCeEE
Confidence 444333333333334555543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.36 E-value=0.16 Score=39.87 Aligned_cols=162 Identities=9% Similarity=0.046 Sum_probs=93.2
Q ss_pred eEEEEeCCCCCceeeec----------CCCCEEEEEEecCCc---EEEEeC-CCcEEEEEccCCCeEEEEEeccCC----
Q psy11036 66 TVNVYDTRSPDPVMSVN----------HGSPVESVLCLPSGG---IFVTGG-GLDVCIWDMLGGGKLLHKFTCHHK---- 127 (239)
Q Consensus 66 ~v~vw~~~~~~~~~~~~----------~~~~v~~~~~~~~~~---~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~---- 127 (239)
.|.-.|.++++....++ ...+........++. .++.+. +|.+.++|.. +++.+........
T Consensus 284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~-tGe~~~~~~~~~~~~~~ 362 (573)
T d1kb0a2 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRT-NGKFISAKNFVPVNWAS 362 (573)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETT-TCCEEEEEESSCCSSEE
T ss_pred eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccc-ccccccccccccccccc
Confidence 46667778887665442 122223333333442 344444 6999999987 6666654431110
Q ss_pred -------------------------------ceEEEEEcCCCCEEEEEecCCeEEEEEcc-cceEee-------------
Q psy11036 128 -------------------------------TVTSLCLASGGKRLISASLDHHAKIYEMT-LKTVSS------------- 162 (239)
Q Consensus 128 -------------------------------~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~------------- 162 (239)
.-..++++|+...+.....+....+.... .+....
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 442 (573)
T d1kb0a2 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (573)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCcccccccccc
Confidence 01124677777777776666655555433 110000
Q ss_pred ---e-------ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCC
Q psy11036 163 ---F-------TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPS 230 (239)
Q Consensus 163 ---~-------~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~ 230 (239)
. ...+.+.-+|+.+ ++.+-..+... +...-..+-.+.+++.|+.||.++.+|.++|+.+.+++.+.
T Consensus 443 ~~~~~~~p~~~~~~G~l~AiD~~t-Gk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~ 518 (573)
T d1kb0a2 443 AKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (573)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccccccCCCCCCCcccEEEeCCCC-CceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCC
Confidence 0 0124588889887 55554443321 21111234467888899999999999999999999988544
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.85 E-value=0.3 Score=38.46 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=42.8
Q ss_pred eeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEecCCC
Q psy11036 167 LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPS 230 (239)
Q Consensus 167 ~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~ 230 (239)
+.+.-||+.+....-.... ..+...-.++..+.+++.|+.||.++.+|.++|+.+.++..+.
T Consensus 453 G~l~A~D~~TG~~~W~~~~--~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~ 514 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKME--RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (596)
T ss_dssp EEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ceEEEEeCCCCceecccCC--CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCC
Confidence 5688899887544333222 2222222234457788889999999999999999999987544
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.82 E-value=0.3 Score=38.29 Aligned_cols=217 Identities=10% Similarity=-0.024 Sum_probs=105.3
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCe-EEEEEecCCC--CEEEEeeCCCeEEEEeCCCCCceeeec-C
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYV-RAGTVSPVSS--DIVISGSYDKTVNVYDTRSPDPVMSVN-H 83 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~--~~l~s~~~dg~v~vw~~~~~~~~~~~~-~ 83 (239)
..|.-.|+++++....++... .+.-.+.....++ ..+...+ .. ..++.++.++.+.++|.++++.+.... .
T Consensus 291 ~SvvAld~~tG~~~W~~q~~~----~D~wd~d~~~~p~l~d~~~~~-g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~ 365 (582)
T d1flga_ 291 SGQVGVDPSSGEVKWFYQHTP----NDAWDFSGNNELVLFDYKAKD-GKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp SEEEEECTTTCCEEEEEESST----TCCSCCCCCCCCEEEEEECSS-SCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred ceeEEecccchhhhhcccccc----ccccccccccccccccccccc-ccccceeEeecccccEEeecccCCccccccccc
Confidence 356667888998877765421 0011111111222 2222222 22 256677899999999999998876552 2
Q ss_pred CCCEEEEEEecCCcEEEEeCCCcEEEEEc-cCCCeEEEEEecc--CCceEEEEEcCCCCEEEEEecCCeEEEEEcc-cc-
Q psy11036 84 GSPVESVLCLPSGGIFVTGGGLDVCIWDM-LGGGKLLHKFTCH--HKTVTSLCLASGGKRLISASLDHHAKIYEMT-LK- 158 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~~~~i~~~d~-~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~- 158 (239)
.......................-.+... ....+........ ...-...+++|+...+.....+....++... ..
T Consensus 366 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~ 445 (582)
T d1flga_ 366 DNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYT 445 (582)
T ss_dssp SCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCC
T ss_pred CccccccccccccccceeccccccccccccccccceEEECCCccCCcccccceecCCCCceeeecccccccccccccccc
Confidence 22222222222111111111000000000 0001111111111 1122345677766666665555444444332 00
Q ss_pred ----------eEeee--ecceeEEEEEccCCCEEEEEEecccCcEEEEEEccCCCeEEEEcCCceEEEEEccCCeeeEEe
Q psy11036 159 ----------TVSSF--TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226 (239)
Q Consensus 159 ----------~~~~~--~~~~~i~~~d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 226 (239)
..... ...+.+.-+|+.+. +.+-....+ .++..-.++..+.+++.|+.||.++.+|.++|+.+.++
T Consensus 446 ~g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG-~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~ 523 (582)
T d1flga_ 446 KGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG-KVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp TTSCCCCEEEEEEESCSSCSEEEEEECTTTC-CEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccccccccCccccccccCCCCeEEEEcCCCC-cEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEE
Confidence 00000 11245777888774 444443322 22222223456778888999999999999999999998
Q ss_pred cCCCC
Q psy11036 227 DYPSP 231 (239)
Q Consensus 227 ~~~~~ 231 (239)
+.+..
T Consensus 524 ~~~~~ 528 (582)
T d1flga_ 524 QTGSG 528 (582)
T ss_dssp ECSSC
T ss_pred ECCCC
Confidence 85443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.67 E-value=0.018 Score=45.54 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=55.0
Q ss_pred CCCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCC
Q psy11036 6 PILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGS 85 (239)
Q Consensus 6 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 85 (239)
..|.|.-+|+.+++.+..++.+. ++.+-..+. .+.++++|+.||.++.+|.++|+.+..+....
T Consensus 464 ~~G~l~AiD~~TG~i~W~~~~~~---------------p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~ 527 (582)
T d1flga_ 464 HVGSLRAMDPVSGKVVWEHKEHL---------------PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS---------------CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCCeEEEEcCCCCcEEeecCCCC---------------CCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCC
Confidence 35889999999999988776553 122212334 56788889999999999999999998874333
Q ss_pred CE--EEEEEecCCcE
Q psy11036 86 PV--ESVLCLPSGGI 98 (239)
Q Consensus 86 ~v--~~~~~~~~~~~ 98 (239)
.+ .-+.|..+|+.
T Consensus 528 ~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 528 GIVSPPITWEQDGEQ 542 (582)
T ss_dssp CCCSCCEEEEETTEE
T ss_pred CccccCEEEEECCEE
Confidence 22 22566678864
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.67 E-value=0.24 Score=36.11 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=82.5
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCEEEEEEec----C--CcEEEEeC--C---CcEEEEEccCCCeEEEEE
Q psy11036 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLP----S--GGIFVTGG--G---LDVCIWDMLGGGKLLHKF 122 (239)
Q Consensus 54 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v~~~~~~~----~--~~~l~~~~--~---~~i~~~d~~~~~~~~~~~ 122 (239)
...+++.....+-|.+||+. |+.+..+. .+.+..+..-. . ...+++++ + ..|.+|.+......+..+
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~ 116 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI 116 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence 34577777777779999985 77766653 45666655432 2 22344454 2 357788876444444444
Q ss_pred ecc-------CCceEEEEE--cCC-CC-EEEEEecCCeEEEEEcc-cceEeeeecceeEEEEEccCCCEEEEEEecccCc
Q psy11036 123 TCH-------HKTVTSLCL--ASG-GK-RLISASLDHHAKIYEMT-LKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKT 190 (239)
Q Consensus 123 ~~~-------~~~i~~i~~--~~~-~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~ 190 (239)
... ...+..+|+ ++. |. ++++...+|.+..|.+. .... .+ ....++.+.. ...
T Consensus 117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g-~v-------------~~~lvr~f~~-~~q 181 (353)
T d1h6la_ 117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNG-YI-------------SGKKVRAFKM-NSQ 181 (353)
T ss_dssp SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS-SE-------------EEEEEEEEEC-SSC
T ss_pred cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCC-ce-------------eeEeeeccCC-CCc
Confidence 321 124667777 554 44 45667778999888775 1100 00 0122333332 334
Q ss_pred EEEEEEccCCCeEEEEcCCceEEEEEc
Q psy11036 191 VTSLCLASGGKRLISASLDHHAKIYEM 217 (239)
Q Consensus 191 v~~~~~s~~~~~l~s~s~d~~i~iwd~ 217 (239)
+..+.+.+..+.|+.+-++.-|..++.
T Consensus 182 ~EGCVvDde~~~LyisEE~~Giw~~~a 208 (353)
T d1h6la_ 182 TEGMAADDEYGSLYIAEEDEAIWKFSA 208 (353)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred cceEEEeCCCCcEEEecCccceEEEEe
Confidence 667777777677777766655544444
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=95.61 E-value=0.025 Score=44.61 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=53.1
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSP 86 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~ 86 (239)
.|.+.-||+.+++.+..++... +...-.... .+.++++|+.||.++.+|.++++.+..+.....
T Consensus 456 ~G~l~AiD~~tGk~~W~~~~~~---------------p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~ 519 (573)
T d1kb0a2 456 FGRLLAWDPVAQKAAWSVEHVS---------------PWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (573)
T ss_dssp EEEEEEEETTTTEEEEEEEESS---------------SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccEEEeCCCCCceEeeecCCC---------------CCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCC
Confidence 3789999999999988776553 111112233 577888899999999999999999988743332
Q ss_pred EEE--EEEecCCcE
Q psy11036 87 VES--VLCLPSGGI 98 (239)
Q Consensus 87 v~~--~~~~~~~~~ 98 (239)
+.. +.|..+|+.
T Consensus 520 ~~~~P~ty~~~GkQ 533 (573)
T d1kb0a2 520 VVAAPSTYMVDGRQ 533 (573)
T ss_dssp CCSCCEEEEETTEE
T ss_pred ccccCEEEEECCEE
Confidence 222 455567763
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.34 E-value=0.32 Score=35.42 Aligned_cols=67 Identities=19% Similarity=0.323 Sum_probs=46.8
Q ss_pred EEEEEecCCCCEEEEeeCC-CeEEEEeCCCCCceeee--cCCCCEEEEEEecCCcEEEEeC--C-----CcEEEEEcc
Q psy11036 46 RAGTVSPVSSDIVISGSYD-KTVNVYDTRSPDPVMSV--NHGSPVESVLCLPSGGIFVTGG--G-----LDVCIWDML 113 (239)
Q Consensus 46 ~~~~~~~~~~~~l~s~~~d-g~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~--~-----~~i~~~d~~ 113 (239)
...++.+ ++.+++.|+.+ ..+.+||..+......- .....-..++..+++++++.++ + ..+.+||+.
T Consensus 79 ~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~ 155 (387)
T d1k3ia3 79 PGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 155 (387)
T ss_dssp CEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred eEEEEec-CCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCC
Confidence 3567778 78888888765 58999998876543321 2233334567778999999887 1 358999987
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.05 E-value=0.035 Score=43.70 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=53.2
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSP 86 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~ 86 (239)
.|.|.-+|+.+++.+....... +..+-.... .+.++++|+.||.++.+|.++++.+..+.....
T Consensus 443 ~G~l~AiD~~TG~~~W~~~~~~---------------~~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~ 506 (571)
T d2ad6a1 443 MGQIRAFDLTTGKAKWTKWEKF---------------AAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESS---------------CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccEEEeccCCCceeeEcCCCC---------------CCCcceeEe-cCCEEEEECCCCeEEEEECCCCcEEEEEECCCC
Confidence 4789999999999887765432 111111222 466888899999999999999999988753333
Q ss_pred EE--EEEEecCCcEE
Q psy11036 87 VE--SVLCLPSGGIF 99 (239)
Q Consensus 87 v~--~~~~~~~~~~l 99 (239)
+. -+.|..+|+..
T Consensus 507 ~~a~P~ty~~dGkqY 521 (571)
T d2ad6a1 507 GIGSPMTYSFKGKQY 521 (571)
T ss_dssp CCSCCEEEEETTEEE
T ss_pred ceecceEEEECCEEE
Confidence 32 25666678643
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=94.84 E-value=0.059 Score=42.22 Aligned_cols=76 Identities=14% Similarity=0.198 Sum_probs=53.0
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSP 86 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~ 86 (239)
.|.|.-+|+.+++.+..+.... +..+-.+.. .+.+++.|+.||.++.+|.++++.+..+.....
T Consensus 437 ~G~l~A~D~~tGk~~W~~~~~~---------------~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~ 500 (560)
T d1kv9a2 437 SGALLAWDPVKQKAAWKVPYPT---------------HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG 500 (560)
T ss_dssp EEEEEEEETTTTEEEEEEEESS---------------SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred ccceEEEeCCCCeEeeeccCCC---------------CCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCC
Confidence 4789999999999887765442 122222333 567888999999999999999999988743332
Q ss_pred EE--EEEEecCCcE
Q psy11036 87 VE--SVLCLPSGGI 98 (239)
Q Consensus 87 v~--~~~~~~~~~~ 98 (239)
+. -+.+..+|+.
T Consensus 501 ~~~~P~ty~~dGkq 514 (560)
T d1kv9a2 501 IVAAPMTFELAGRQ 514 (560)
T ss_dssp CCSCCEEEEETTEE
T ss_pred ccccCEEEEECCEE
Confidence 22 2455567764
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.61 E-value=0.6 Score=34.86 Aligned_cols=99 Identities=9% Similarity=0.011 Sum_probs=58.8
Q ss_pred eEEEEEecCCCCEEE-EeeCC----CeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC-C--------------
Q psy11036 45 VRAGTVSPVSSDIVI-SGSYD----KTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-G-------------- 104 (239)
Q Consensus 45 v~~~~~~~~~~~~l~-s~~~d----g~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-------------- 104 (239)
+...+++| ++++++ +-+.+ ..++++|+.+++.+...-.......+.|.++++.|+... +
T Consensus 127 ~~~~~~Sp-d~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~ 205 (430)
T d1qfma1 127 LRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (430)
T ss_dssp EEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred ecceEecC-CCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence 44678889 666666 33333 479999999998654221111225688999998776432 1
Q ss_pred --CcEEEEEccCCC-eEEEEEeccC--CceEEEEEcCCCCEEEEE
Q psy11036 105 --LDVCIWDMLGGG-KLLHKFTCHH--KTVTSLCLASGGKRLISA 144 (239)
Q Consensus 105 --~~i~~~d~~~~~-~~~~~~~~~~--~~i~~i~~~~~~~~l~~~ 144 (239)
..+..+.+.... +....+.... ..+..+..++++++++..
T Consensus 206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence 246666665221 1222333322 346677788999887653
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=94.23 E-value=0.077 Score=41.91 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=51.3
Q ss_pred CEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeeecCCCCE
Q psy11036 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPV 87 (239)
Q Consensus 8 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~v 87 (239)
|.|.-||+.+++.+....... +..+-.++. .+.+++.|+.||.++.+|.++++.+..+.....+
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~---------------~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~ 516 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERF---------------AVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESS---------------CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred ceEEEEeCCCCceecccCCCC---------------CCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCc
Confidence 789999999999877654432 122222233 5678888999999999999999999887432222
Q ss_pred --EEEEEecCCcE
Q psy11036 88 --ESVLCLPSGGI 98 (239)
Q Consensus 88 --~~~~~~~~~~~ 98 (239)
.-+.|..+|+.
T Consensus 517 ~a~P~tY~~dGkQ 529 (596)
T d1w6sa_ 517 IGYPMTYTHKGTQ 529 (596)
T ss_dssp CSCCEEEEETTEE
T ss_pred ccCCeEEEECCEE
Confidence 22445557764
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.93 E-value=0.8 Score=33.65 Aligned_cols=143 Identities=12% Similarity=0.038 Sum_probs=86.6
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCC----------C-CceeeecCCCCEEEEEEecCCcEEEEeCCCcEEEEE
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRS----------P-DPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWD 111 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~----------~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~d 111 (239)
....-++.++ ...+++.|+.++ ++|..+.. + ...... .-..|..++|+. ..+++..++.+..++
T Consensus 37 ~~~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~-~ip~v~~vafs~--d~l~v~~~~~l~~~~ 111 (381)
T d1xipa_ 37 ASLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPDVIFVCFHG--DQVLVSTRNALYSLD 111 (381)
T ss_dssp SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTTEEEEEEET--TEEEEEESSEEEEEE
T ss_pred cccceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc-CCCCeEEEEeeC--CEEEEEeCCCEEEEE
Confidence 5677888888 566888888775 66766321 1 111111 223688899974 456666677788888
Q ss_pred ccCCCeEEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEecccCcE
Q psy11036 112 MLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTV 191 (239)
Q Consensus 112 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~h~~~v 191 (239)
.. .-........-..++..+.++|. .++....++.+.++++.......+.. + +..+. -.+.+
T Consensus 112 ~~-~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~------------~--v~~~~-~~~~~ 173 (381)
T d1xipa_ 112 LE-ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ------------N--VTSFD-VTNSQ 173 (381)
T ss_dssp SS-STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE------------S--EEEEE-ECSSE
T ss_pred ee-ccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC------------C--cceEE-ecCCc
Confidence 87 33333444445667888888775 56667778888888887111111100 0 00111 13558
Q ss_pred EEEEEccCCCeEEEEcC
Q psy11036 192 TSLCLASGGKRLISASL 208 (239)
Q Consensus 192 ~~~~~s~~~~~l~s~s~ 208 (239)
.+++|++.|..++++..
T Consensus 174 ~~v~ws~kgkq~v~~~g 190 (381)
T d1xipa_ 174 LAVLLKDRSFQSFAWRN 190 (381)
T ss_dssp EEEEETTSCEEEEEEET
T ss_pred eEEEEeCCcEEEEEeCC
Confidence 88889888888877743
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.13 E-value=1.6 Score=32.34 Aligned_cols=78 Identities=3% Similarity=-0.007 Sum_probs=48.1
Q ss_pred CEEEEeeCCCcceee-eeeCCceeeccceeeccCCCCCeEEEEEecCCCCEEEEeeC----------------CCeEEEE
Q psy11036 8 LIVALWDIPSEAQVS-TFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSY----------------DKTVNVY 70 (239)
Q Consensus 8 g~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----------------dg~v~vw 70 (239)
..|++.|+.+++.+. .+.. .....++|.+ +++.|+-... ...|..+
T Consensus 151 ~~l~v~Dl~tg~~~~~~i~~----------------~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h 213 (430)
T d1qfma1 151 VTIKFMKVDGAKELPDVLER----------------VKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH 213 (430)
T ss_dssp EEEEEEETTTTEEEEEEEEE----------------ECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred heeEEeccCcceeccccccc----------------ccccceEEcC-CCCEEEEEEeccccCcccccccccCCcceEEEE
Confidence 688999999998654 2221 1224688999 5665543222 2368888
Q ss_pred eCCCCCcee--eec---CCCCEEEEEEecCCcEEEEe
Q psy11036 71 DTRSPDPVM--SVN---HGSPVESVLCLPSGGIFVTG 102 (239)
Q Consensus 71 ~~~~~~~~~--~~~---~~~~v~~~~~~~~~~~l~~~ 102 (239)
.+.+..... .+. ....+..+..++++++++..
T Consensus 214 ~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred ECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence 887764432 222 22346677888999987643
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=92.11 E-value=1.5 Score=31.79 Aligned_cols=188 Identities=12% Similarity=0.120 Sum_probs=103.3
Q ss_pred CCEEEEeeCCCcceeeeeeCCceeeccceeeccCCCCCeEEEEEec----C-CCCEEEEee-C-C--CeEEEEeCCC-CC
Q psy11036 7 ILIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSP----V-SSDIVISGS-Y-D--KTVNVYDTRS-PD 76 (239)
Q Consensus 7 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~~l~s~~-~-d--g~v~vw~~~~-~~ 76 (239)
.+-|++||+ .|+.++.+... .+..+..-. . ...-++.++ . + -+|.+|.+.. ..
T Consensus 49 ~~Gl~vYdL-~G~~l~~~~~G----------------r~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~ 111 (353)
T d1h6la_ 49 KSGLAVYSL-EGKMLHSYHTG----------------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG 111 (353)
T ss_dssp TSCCEEEET-TCCEEEECCSS----------------CEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred cCCEEEEcC-CCcEEEecccC----------------CcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc
Confidence 345999998 58877777543 344444331 0 122344444 2 2 2577887753 22
Q ss_pred ceeeec--------CCCCEEEEEE--ecC-CcE-EEEeC-CCcEEEEEccCC--C----eEEEEEeccCCceEEEEEcCC
Q psy11036 77 PVMSVN--------HGSPVESVLC--LPS-GGI-FVTGG-GLDVCIWDMLGG--G----KLLHKFTCHHKTVTSLCLASG 137 (239)
Q Consensus 77 ~~~~~~--------~~~~v~~~~~--~~~-~~~-l~~~~-~~~i~~~d~~~~--~----~~~~~~~~~~~~i~~i~~~~~ 137 (239)
.+..+. ....+..+++ ++. +.. +++.. +|.+..|.+... + +.++.+. -...+..+.+.++
T Consensus 112 ~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde 190 (353)
T d1h6la_ 112 TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDE 190 (353)
T ss_dssp EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETT
T ss_pred ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCC
Confidence 222221 1224566666 554 544 34444 688888876422 2 3444554 3457889999998
Q ss_pred CCEEEEEecCCeEEEEEcccceEeeeecceeEEEEEccCCCEEEEEEec--ccCcEEEEEEcc--C--CCeEEEEcCCce
Q psy11036 138 GKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTC--HHKTVTSLCLAS--G--GKRLISASLDHH 211 (239)
Q Consensus 138 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--h~~~v~~~~~s~--~--~~~l~s~s~d~~ 211 (239)
...|..+-++.-+..++.+... ......+....+ ....+..|+.-. + |-+|+|.-.+++
T Consensus 191 ~~~LyisEE~~Giw~~~a~~~~---------------~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~ 255 (353)
T d1h6la_ 191 YGSLYIAEEDEAIWKFSAEPDG---------------GSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSS 255 (353)
T ss_dssp TTEEEEEETTTEEEEEESSTTS---------------CSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred CCcEEEecCccceEEEEeccCC---------------CccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCe
Confidence 8899998887766555544100 001111111111 244566666432 3 334555557899
Q ss_pred EEEEEccC-CeeeEEec
Q psy11036 212 AKIYEMVN-FSPVHTLD 227 (239)
Q Consensus 212 i~iwd~~~-~~~~~~~~ 227 (239)
..+||..+ .+.+.++.
T Consensus 256 f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 256 YAIYERQGQNKYVADFQ 272 (353)
T ss_dssp EEEEESSTTCCEEEEEE
T ss_pred EEEEecCCCccccceEE
Confidence 99999976 46676664
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.12 E-value=2 Score=31.41 Aligned_cols=98 Identities=9% Similarity=-0.089 Sum_probs=56.9
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceee------ecCCCCEEEEEEecCCcEEEEeCCCcEEEE-EccCC
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMS------VNHGSPVESVLCLPSGGIFVTGGGLDVCIW-DMLGG 115 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~-d~~~~ 115 (239)
.++..+.++| ..++....++.+.++++..++.... +.-.+.+.+++|++.|..++++.++...+- ++. .
T Consensus 126 ~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~-~ 201 (381)
T d1xipa_ 126 KPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFS-L 201 (381)
T ss_dssp SCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEEC-C
T ss_pred ccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCCceeeccCCC-C
Confidence 6688888877 3555666789999999988764332 123466788888888877777643322221 111 0
Q ss_pred CeEEEEEeccCCceEEEEEcCCCCEEEEE
Q psy11036 116 GKLLHKFTCHHKTVTSLCLASGGKRLISA 144 (239)
Q Consensus 116 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 144 (239)
...+.........+.+|.|-.+..++++-
T Consensus 202 ~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 202 PSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp CHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 00000001123467888887665555543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.58 E-value=3.1 Score=31.12 Aligned_cols=103 Identities=9% Similarity=0.035 Sum_probs=61.0
Q ss_pred CCeEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeee---------cCCCCEEEEEEecC---CcEEEEeC-------
Q psy11036 43 DYVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV---------NHGSPVESVLCLPS---GGIFVTGG------- 103 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---------~~~~~v~~~~~~~~---~~~l~~~~------- 103 (239)
...++|+|.| ++++|++--..|.|++++..+++..... ..+.....|+++|+ ..++....
T Consensus 27 ~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~ 105 (450)
T d1crua_ 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (450)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence 5678999999 7888887655799999998777543221 12356789999984 33444321
Q ss_pred -C----Cc--EEEEEccCCCeE-------EEEEe-ccCCceEEEEEcCCCCEEEEEec
Q psy11036 104 -G----LD--VCIWDMLGGGKL-------LHKFT-CHHKTVTSLCLASGGKRLISASL 146 (239)
Q Consensus 104 -~----~~--i~~~d~~~~~~~-------~~~~~-~~~~~i~~i~~~~~~~~l~~~~~ 146 (239)
+ +. +..+........ +..+. ........|.|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 1 11 333333312111 11111 11124578999999987776653
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.55 E-value=2.6 Score=30.22 Aligned_cols=102 Identities=9% Similarity=0.029 Sum_probs=61.3
Q ss_pred CCeEEEEEecCCCCEEEEee--C-C------------CeEEEEeCCCCCceeeecCCCCEEEEEEecCCcEEEEeC--CC
Q psy11036 43 DYVRAGTVSPVSSDIVISGS--Y-D------------KTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG--GL 105 (239)
Q Consensus 43 ~~v~~~~~~~~~~~~l~s~~--~-d------------g~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~ 105 (239)
....++++.. ++.+++|-. . + ++-.+|....++.......-...+.++++|++++++++. .+
T Consensus 150 ~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~ 228 (340)
T d1v04a_ 150 PSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAH 228 (340)
T ss_dssp SSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred cCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCC
Confidence 4577888888 677777721 1 0 233444444444333333445688999999999888887 58
Q ss_pred cEEEEEccCCCeEEE-EEeccCCceEEEEEcCCCCEEEEEe
Q psy11036 106 DVCIWDMLGGGKLLH-KFTCHHKTVTSLCLASGGKRLISAS 145 (239)
Q Consensus 106 ~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~ 145 (239)
.|..|++...+.... ....-....-.+.+.+++..+.+++
T Consensus 229 ~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 229 KIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred eEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 899999974433221 1222345567788876444444443
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.68 E-value=3 Score=29.70 Aligned_cols=101 Identities=10% Similarity=0.037 Sum_probs=61.7
Q ss_pred CCEEEEeeCCCeEEEEeCCCCC------ce--eeecCCCCEEEEEEecCCcEEEEeC-CCcEEEEEccCC------CeEE
Q psy11036 55 SDIVISGSYDKTVNVYDTRSPD------PV--MSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGG------GKLL 119 (239)
Q Consensus 55 ~~~l~s~~~dg~v~vw~~~~~~------~~--~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~------~~~~ 119 (239)
..+|+..+..|.++...+.... .. ..+.....+..+........++.++ .|.+..++...- ..-+
T Consensus 106 ~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV 185 (323)
T d1wp5a_ 106 NGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGV 185 (323)
T ss_dssp SCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCE
T ss_pred ceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEEEecceeeEeecccccccCcccccc
Confidence 5678888999999998864321 11 2234556677777766555555555 788888887521 1111
Q ss_pred --EEEeccCCceEE-EEEcCCCCEEEEEecCCeEEEEEcc
Q psy11036 120 --HKFTCHHKTVTS-LCLASGGKRLISASLDHHAKIYEMT 156 (239)
Q Consensus 120 --~~~~~~~~~i~~-i~~~~~~~~l~~~~~d~~i~i~d~~ 156 (239)
..+.. ...+.. ....+++..++..+..|..+.-.+.
T Consensus 186 ~~ikL~~-~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~ 224 (323)
T d1wp5a_ 186 KGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp ECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred ccccccc-ccccchhhhccccccceeeeeeeheeecccch
Confidence 12222 234443 3445566788888888888876665
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.08 E-value=4 Score=30.49 Aligned_cols=53 Identities=9% Similarity=0.078 Sum_probs=37.7
Q ss_pred CCCEEEEEEecCCcEEEEeC-CCcEEEEEccCCCeEE--EEEe------ccCCceEEEEEcCC
Q psy11036 84 GSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL--HKFT------CHHKTVTSLCLASG 137 (239)
Q Consensus 84 ~~~v~~~~~~~~~~~l~~~~-~~~i~~~d~~~~~~~~--~~~~------~~~~~i~~i~~~~~ 137 (239)
-...++|+|.|+++++++-- .|.|++++.. .+... ..+. ..+.....|+++|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~-~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECC-CCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 45678999999999999886 6999999876 33322 2221 12356789999985
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.77 E-value=3.3 Score=28.17 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCc-----eEEEEEccCC--eeeEEecCCC
Q psy11036 199 GGKRLISASLDH-----HAKIYEMVNF--SPVHTLDYPS 230 (239)
Q Consensus 199 ~~~~l~s~s~d~-----~i~iwd~~~~--~~~~~~~~~~ 230 (239)
++++++.|+.++ .+.+||+.+. +.+..++.+.
T Consensus 242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R 280 (288)
T d1zgka1 242 QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGR 280 (288)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC
T ss_pred CCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCc
Confidence 677777776543 4889999864 4555554433
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