Psyllid ID: psy11046

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

MTPLVKYLKNHSRYLPQMSDEKENSEPKSEAPTPEVDEEGYRIRPKEEMWDAEKFYSSSDSDSDDDRDHKIHVEIKPLSANTNQISASVDELRVTAGNLTLSPLSVKERRNSIDINPEVNFSQSPHKKINGLAELNHALMKTMGDSASTEDKPDHVDPTEPPLGLLSGNTPPPSSSTSTEKTTSDSSSTSKYTNLGDLFSEVGEIVPALPPKQTARMTPTLTSSTISLPRPPSRRSEGRGHISPLNSTLTRSESEFKTSGVSTTNSSRGPSPLTIGMSDTIPLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPNKQLINIEENKLDKSSDSMTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPTHTDLKVDYKYNNHAMGSPSPLLNVVLAVPVDGEVTNVQAKPNVQWLPETNRAIWKFTDLSQHSENHGIGCVKARFELKNGPGTPSTIATQFNCEGTTLSGAEFELIGPGYRVSLVKRKFMSGKLVLI

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccEEEEEEEEEEEccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccEEEHHHHHHHHHHHHccccccccccEEEEEEEEEccccccccccEEEEEEEcccccEEEEEEEEEcccccccccccEEEEEEEccccccEEEEEcccccccccccccEEccccccccccccccEEEEEEEEccccccccccEEEEEEEcccccccccEEEEcccEEEEEEEEEEcccEEEEc

ccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccEEEEEEEEcccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEEHEEEHHHHHHcccccccEEEEEEEEEEEEccccHHHHHcccccccEEEEEEEcccHHHHcccccHHEEcccccccccccccEEEEcHHHHHHHHHHHHHHcccccEEEEEEEEEEEEcccccccccEEEEEEEEccccccEEEEEEEEccccccccccccEEEEEEEccccccEccccccccEcccccEEEEEcccccccccccccEEEEEEEEccccccccccEEEEEEEcccEEccEEEEEEccccEEEEEEEEEEccEEEEc

MTPLVKYLKNhsrylpqmsdekensepkseaptpevdeegyrirpkeemwdaekfysssdsdsdddrdhkihveikplsantnqISASVDELRVTagnltlsplsvkerrnsidinpevnfsqsphkkiNGLAELNHALMKTmgdsastedkpdhvdptepplgllsgntpppssststekttsdssstskytnlgdlfsevgeivpalppkqtarmtptltsstislprppsrrsegrghisplnstltrsesefktsgvsttnssrgpspltigmsdtiPLAVAFHEIIHSYfrgtdetrcqvkmsgdmmlsfPAGIVSIltsnpspaqlkfkvSNISHIenmlpnkqlinieenkldkssdsmtcEFNMSALSSLLRKQceqnpsasyfnvDILKYQikskpgaescpfqlvahwkcepthtdlkvdykynnhamgspsplLNVVLAvpvdgevtnvqakpnvqwlpetnraiwkftdlsqhsenhgiGCVKarfelkngpgtpstiatqfncegttlsgaefeligpgyrvSLVKrkfmsgklvli

mtplvkylknhsrylpqmsdekensepkseaptpevdeegyrirpkeemwdaekfysssdsdsdddrDHKIHveikplsantnqISASVDELRVTAGnltlsplsvkerrnsidinpevnfsqsphKKINGLAELNHALMKTMGDSASTEDKPDHVDPTEPplgllsgntpppssststekttsdssstsKYTNLGDLFSEVGEIVPAlppkqtarmtptltsstislprppsrrsegrghisplnstltrsesefktsgvsttnssrgpsplTIGMSDTIPLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPNKQLINIEENKLDKSSDSMTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPTHTDLKVDYKYNNHAMGSPSPLLNVVLAVPVDGEvtnvqakpnvqwlpeTNRAIWKFTDLSQHSENHGIGCVKARFELKNGPGTPSTIATQFNCEGTTLSGAEFELIGPGYrvslvkrkfmsgklvli

MTPLVKYLKNHSRYLPQMSDEKENSEPKSEAPTPEVDEEGYRIRPKEEMWDAEKFYsssdsdsdddRDHKIHVEIKPLSANTNQISASVDELRVTAGNLTLSPLSVKERRNSIDINPEVNFSQSPHKKINGLAELNHALMKTMGDSASTEDKPDHVDPTEPPLGLLSGNtpppssststekttsdssstsKYTNLGDLFSEVGEIVPALPPKQTARMtptltsstislprppsrrsEGRGHISPLNSTLTRSESEFKTSGVSTTNSSRGPSPLTIGMSDTIPLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPNKQLINIEENKLDKSSDSMTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPTHTDLKVDYKYNNHAMGSPSPLLNVVLAVPVDGEVTNVQAKPNVQWLPETNRAIWKFTDLSQHSENHGIGCVKARFELKNGPGTPSTIATQFNCEGTTLSGAEFELIGPGYRVSLVKRKFMSGKLVLI

******************************************************************************************************************************************************************************************************F***************************************************************************IGMSDTIPLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVSILTS*****QLKFKVSNISHIENML****LI************************************ASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPTHTDLKVDYKYNNHAMGSPSPLLNVVLAVPVDGEVTNVQAKPNVQWLPETNRAIWKFTDLSQHSENHGIGCVKARFELKNGPGTPSTIATQFNCEGTTLSGAEFELIGPGYRVSLVKRKFMSGKL***

*************************************EEGYRIR************************************************************************************************************************************************************************************************************************************************VAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVS*****PSPAQLKFKVSNISHIENMLPNKQLI***************CEFNMSALSSLL**********SYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPTHTDLKVDYKYNNHAMGSPSPLLNVVLAVPVDGEVTNVQAK*************W*********************************ATQFNCEGTTLSGAEFELIGPGYRVSLVKRKFMSGKLVLI

MTPLVKYLKNHSRYLPQM*********************GYRIRPKEEMWDAEK*************DHKIHVEIKPLSANTNQISASVDELRVTAGNLTLSPLSVKERRNSIDINPEVNFSQSPHKKINGLAELNHALMKTM***************TEPPLGLLSG**********************KYTNLGDLFSEVGEIVPALPPKQTARMTPTL*******************HISPLNST**********************SPLTIGMSDTIPLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPNKQLINIEENKLDKSSDSMTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPTHTDLKVDYKYNNHAMGSPSPLLNVVLAVPVDGEVTNVQAKPNVQWLPETNRAIWKFTDLSQHSENHGIGCVKARFELKNGPGTPSTIATQFNCEGTTLSGAEFELIGPGYRVSLVKRKFMSGKLVLI

******************************APTPEVDEEGYRIRPKE*******************RDHKIHVEIKPLSA**********ELRVT***L*L****************************************************************************************************************************************************************************TIGMSDTIPLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPNKQLINIEENKLDKSSDSMTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPTHTDLKVDYKYNNHAMGSPSPLLNVVLAVPVDGEVTNVQAKPNVQWLPETNRAIWKFTDLSQHSENHGIGCVKARFELKNGPGTPSTIATQFNCEGTTLSGAEFELIGPGYRVSLVKRKFMSGKLVLI

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		550	2.2.26 [Sep-21-2011]
Q0JRZ9		810	FCH domain only protein 2	yes	N/A	0.869	0.590	0.406	9e-92
Q5R807		810	FCH domain only protein 2	yes	N/A	0.869	0.590	0.406	2e-91
D3ZYR1		809	FCH domain only protein 2	yes	N/A	0.867	0.589	0.400	4e-89
Q3UQN2		809	FCH domain only protein 2	yes	N/A	0.867	0.589	0.396	6e-88
Q502I9		848	FCH domain only protein 2	yes	N/A	0.505	0.327	0.512	5e-84
Q8VD37		806	SH3-containing GRB2-like	no	N/A	0.510	0.348	0.491	2e-79
Q9BQI5		828	SH3-containing GRB2-like	no	N/A	0.505	0.335	0.493	4e-79
P0DJJ3		827	SH3-containing GRB2-like	no	N/A	0.507	0.337	0.491	1e-78
Q6IZA3		827	SH3-containing GRB2-like	N/A	N/A	0.507	0.337	0.487	6e-78
Q5RDL3		804	SH3-containing GRB2-like	no	N/A	0.505	0.345	0.489	2e-77

>sp\|Q0JRZ9\|FCHO2_HUMAN FCH domain only protein 2 OS=Homo sapiens GN=FCHO2 PE=1 SV=2	Back alignment and function desciption

 Score =  338 bits (866), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 215/529 (40%), Positives = 313/529 (59%), Gaps = 51/529 (9%)

Query: 34  PEVDEEGYRIRPKEEMWDAEK--FYSSSDSDSDDDRDHKIHVEIKPLS-ANTNQISASVD 90
           P+VDEEGY I+P+    D ++  FYSSSDSDS+D+   K  +EIKP+   N++   AS+D
Sbjct: 316 PDVDEEGYSIKPETNQNDTKENHFYSSSDSDSEDEEPKKYRIEIKPMHPNNSHHTMASLD 375

Query: 91  ELRVTAGNLTLSPLSVKERRNSIDINPEVNFSQSPHKKINGLAELNHALMKTMGDSASTE 150
           EL+V+ GN+TLSP     R + + +N  ++               N  L K+   +   E
Sbjct: 376 ELKVSIGNITLSP--AISRHSPVQMNRNLS---------------NEELTKSKPSAPPNE 418

Query: 151 DKPDHVDPTEPPLGLLSGNTPPPSSSTSTEKTTSDSSSTSKYTNLGDLFSEVGEIVPALP 210
                +   +P  G        PS  +S+  + + SSS    T L      VG IVP  P
Sbjct: 419 KGTSDLLAWDPLFG--------PSLDSSSSSSLTSSSSARPTTPLS-----VGTIVP--P 463

Query: 211 PKQTARMTPTLTSSTIS----LPRPPS-------RRSEGRGHISPLNSTLTRSESEFKTS 259
           P+  +R  P LTS  +S    +PRP S                   +S+   S +    +
Sbjct: 464 PRPASR--PKLTSGKLSGINEIPRPFSPPVTSNTSPPPAAPLARAESSSSISSSASLSAA 521

Query: 260 GVSTTNSSRGPSPLTIGMSDTIPLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGI 319
              T   SRGPSP+++G  DT+P+AVA  E +++YF+G D T+C VK++GDM +SFP+GI
Sbjct: 522 NTPTVGVSRGPSPVSLGNQDTLPVAVALTESVNAYFKGADPTKCIVKITGDMTMSFPSGI 581

Query: 320 VSILTSNPSPAQLKFKVSNISHIENMLPNKQLINIEENKLDKSSDSMTCEFNMSALSSLL 379
           + + TSNP+PA L F+V NIS +E +LPN QL+  + ++ D  S++     NM A++  L
Sbjct: 582 IKVFTSNPTPAVLCFRVKNISRLEQILPNAQLVFSDPSQCD--SNTKDFWMNMQAVTVYL 639

Query: 380 RKQCEQNPSASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPTHTDLKVDYKYNNHAMG 439
           +K  EQNP+ASY+NVD+LKYQ+ S  G +S P  L  +WKC  + TDL+VDYKYN  AM 
Sbjct: 640 KKLSEQNPAASYYNVDVLKYQVSSN-GIQSTPLNLATYWKCSASTTDLRVDYKYNPEAMV 698

Query: 440 SPSPLLNVVLAVPVDGEVTNVQAKPNVQWLPETNRAIWKFTDLSQHSENHGIGCVKARFE 499
           +PS L N+ + VPVDG VTN+Q+ P   W  E  +A WK + +S+ SEN G G ++A+F+
Sbjct: 699 APSVLSNIQVVVPVDGGVTNMQSLPPAIWNAEQMKAFWKLSSISEKSENGGSGSLRAKFD 758

Query: 500 LKNGPGTPSTIATQFNCEGTTLSGAEFELIGPGYRVSLVKRKFMSGKLV 548
           L  GP  P+T+A QF  EG+TLSG +FEL+G GYR+SL+K++F +G+ +
Sbjct: 759 LSEGPSKPTTLAVQFLSEGSTLSGVDFELVGTGYRLSLIKKRFATGRYL 807

Functions in an early step of clathrin-mediated endocytosis. Has both a membrane binding/bending activity and the ability to recruit proteins essential to the formation of functional clathrin-coated pits. Has a lipid-binding activity with a preference for membranes enriched in phosphatidylserine and phosphoinositides (Pi(4,5) biphosphate) like the plasma membrane. Its membrane-bending activity might be important for the subsequent action of clathrin and adaptors in the formation of clathrin-coated vesicles. Involved in adaptor protein complex AP-2-dependent endocytosis of the transferin receptor, it also functions in the AP-2-independent endocytosis of the LDL receptor.
Homo sapiens (taxid: 9606)

>sp\|Q5R807\|FCHO2_PONAB FCH domain only protein 2 OS=Pongo abelii GN=FCHO2 PE=2 SV=1	Back alignment and function description

>sp\|D3ZYR1\|FCHO2_RAT FCH domain only protein 2 OS=Rattus norvegicus GN=Fcho2 PE=1 SV=1	Back alignment and function description

>sp\|Q3UQN2\|FCHO2_MOUSE FCH domain only protein 2 OS=Mus musculus GN=Fcho2 PE=1 SV=1	Back alignment and function description

>sp\|Q502I9\|FCHO2_DANRE FCH domain only protein 2 OS=Danio rerio GN=fcho2 PE=2 SV=1	Back alignment and function description

>sp\|Q8VD37\|SGIP1_MOUSE SH3-containing GRB2-like protein 3-interacting protein 1 OS=Mus musculus GN=Sgip1 PE=1 SV=1	Back alignment and function description

>sp\|Q9BQI5\|SGIP1_HUMAN SH3-containing GRB2-like protein 3-interacting protein 1 OS=Homo sapiens GN=SGIP1 PE=1 SV=2	Back alignment and function description

>sp\|P0DJJ3\|SGIP1_RAT SH3-containing GRB2-like protein 3-interacting protein 1 OS=Rattus norvegicus GN=Sgip1 PE=1 SV=1	Back alignment and function description

>sp\|Q6IZA3\|SGIP1_PSAOB SH3-containing GRB2-like protein 3-interacting protein 1 OS=Psammomys obesus GN=SGIP1 PE=1 SV=1	Back alignment and function description

>sp\|Q5RDL3\|SGIP1_PONAB SH3-containing GRB2-like protein 3-interacting protein 1 OS=Pongo abelii GN=SGIP1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		550
307188178		1008	FCH domain only protein 2 [Camponotus fl	0.945	0.515	0.575	1e-167
332023231		1036	FCH domain only protein 2 [Acromyrmex ec	0.938	0.498	0.579	1e-167
307194550		954	FCH domain only protein 2 [Harpegnathos	0.932	0.537	0.572	1e-165
242011337		879	proline-serine-threonine phosphatase int	0.912	0.571	0.585	1e-160
270014770		913	hypothetical protein TcasGA2_TC005182 [T	0.929	0.559	0.565	1e-159
189233848		894	PREDICTED: similar to FCH domain only 2	0.929	0.571	0.565	1e-158
380028499		985	PREDICTED: LOW QUALITY PROTEIN: FCH doma	0.930	0.519	0.564	1e-158
345486878		949	PREDICTED: FCH domain only protein 2-lik	0.929	0.538	0.550	1e-154
345486876		1003	PREDICTED: FCH domain only protein 2-lik	0.929	0.509	0.548	1e-154
345486880		883	PREDICTED: FCH domain only protein 2-lik	0.929	0.578	0.548	1e-154

>gi\|307188178\|gb\|EFN73010.1\| FCH domain only protein 2 [Camponotus floridanus]	Back alignment and taxonomy information

 Score =  596 bits (1536), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 314/546 (57%), Positives = 402/546 (73%), Gaps = 26/546 (4%)

Query: 15  LPQMSDEKENSEPKSEAPTPEVDEEGYRIRPKEEMWDAEK-FYSSSDSDSDDDRDHKIHV 73
           L  + ++K++S  KSE PTPEVDE+G+ IRPK + W+ EK FYSSSD+DS+D+R+ KI V
Sbjct: 458 LVHIEEDKDDSR-KSETPTPEVDEDGFCIRPKPDPWENEKGFYSSSDTDSEDERERKIRV 516

Query: 74  EIKPLSANTNQISASVDELRVTAGNLTLSPLSVKERRNSIDINPEVNFSQSPHKKINGLA 133
           EIKPLS     +SASVDELR T  NL+LSP     R ++ D +  +  SQS  +++ G  
Sbjct: 517 EIKPLSNGGAPMSASVDELRATVENLSLSPAPTGRRGSNTDSDHHMKRSQSVSQQLGGKP 576

Query: 134 ELNHALMKTMGDSASTEDKPDHVDPTEPPLGLLSGNTPPPSSSTSTEKTTSDSS----ST 189
             +  L   + + +ST         + P   L S   PPP S++ T      S+    S 
Sbjct: 577 S-SDLLGLNLFNPSSTPSSASTPTGSHPYAPLQS---PPPISTSPTLSQPPQSAPPIHSH 632

Query: 190 SKYTNLGDLFSEVGEIVPALPPKQTARMTPTLTSSTISLPRPPSRRSEG---RGHISPLN 246
           +++ + GDLFSEVG+I PALPPKQ+A  TPT    +I +PRPPSRR EG   RG +SP  
Sbjct: 633 TRFPD-GDLFSEVGDITPALPPKQSASSTPT---GSIVIPRPPSRRGEGPSSRGRMSP-- 686

Query: 247 STLTRSES----EFKTSGVSTTNSSRGPSPLTIGMSDTIPLAVAFHEIIHSYFRGTDETR 302
           +T++R++S    EF+T+GV    SSRGPSPLTIG++DTIPLAVAFHEI+HSYFRGTDETR
Sbjct: 687 ATISRADSVASLEFRTAGVGV-GSSRGPSPLTIGLADTIPLAVAFHEIVHSYFRGTDETR 745

Query: 303 CQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPNKQLINIEENKLDKS 362
           CQVK+SGDMMLSFPAGIV++L +NP+PA+L F+V N + +E +LPN QLI+++  +   +
Sbjct: 746 CQVKLSGDMMLSFPAGIVAVLANNPNPAKLTFRVRNTNRLERLLPNSQLISMDATQT--T 803

Query: 363 SDSMTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEP 422
            DS   EFNMSAL++LLR+Q EQNPSASYFNVDILKYQIK K GA SCPFQLVA+WKCE 
Sbjct: 804 VDSTIFEFNMSALTTLLRRQAEQNPSASYFNVDILKYQIKCKDGAGSCPFQLVAYWKCET 863

Query: 423 THTDLKVDYKYNNHAMGSPSPLLNVVLAVPVDGEVTNVQAKPNVQWLPETNRAIWKFTDL 482
           THTDLK+DYKYN+ AM SPSPLLN+ +A P+DG   ++ +KP  QW+P+TNR +WKFT+L
Sbjct: 864 THTDLKIDYKYNSRAMASPSPLLNLHVAAPIDGGFKSLNSKPPAQWIPDTNRVLWKFTEL 923

Query: 483 SQHSENHGIGCVKARFELKNGPGTPSTIATQFNCEGTTLSGAEFELIGPGYRVSLVKRKF 542
           SQHSE +G+G +KAR EL+ GPG+  TI TQFNCEGTTLSG EFELIG GYR+SLVKRKF
Sbjct: 924 SQHSEGNGVGSLKARIELERGPGSQGTIFTQFNCEGTTLSGVEFELIGSGYRLSLVKRKF 983

Query: 543 MSGKLV 548
           +SGK +
Sbjct: 984 VSGKYI 989

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|332023231\|gb\|EGI63487.1\| FCH domain only protein 2 [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|307194550\|gb\|EFN76842.1\| FCH domain only protein 2 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|242011337\|ref\|XP_002426409.1\| proline-serine-threonine phosphatase interacting protein, putative [Pediculus humanus corporis] gi\|212510508\|gb\|EEB13671.1\| proline-serine-threonine phosphatase interacting protein, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|270014770\|gb\|EFA11218.1\| hypothetical protein TcasGA2_TC005182 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|189233848\|ref\|XP_972256.2\| PREDICTED: similar to FCH domain only 2 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|380028499\|ref\|XP_003697937.1\| PREDICTED: LOW QUALITY PROTEIN: FCH domain only protein 2-like [Apis florea]	Back alignment and taxonomy information

>gi\|345486878\|ref\|XP_001607679.2\| PREDICTED: FCH domain only protein 2-like isoform 1 [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|345486876\|ref\|XP_003425576.1\| PREDICTED: FCH domain only protein 2-like isoform 2 [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|345486880\|ref\|XP_003425577.1\| PREDICTED: FCH domain only protein 2-like isoform 3 [Nasonia vitripennis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		550
UNIPROTKB\|Q0JRZ9		810	FCHO2 "FCH domain only protein	0.541	0.367	0.475	1e-90
UNIPROTKB\|Q5R807		810	FCHO2 "FCH domain only protein	0.541	0.367	0.471	2.1e-90
UNIPROTKB\|F1MYS2		813	FCHO2 "Uncharacterized protein	0.54	0.365	0.475	2.3e-90
UNIPROTKB\|E1BUR2		813	FCHO2 "Uncharacterized protein	0.536	0.362	0.488	6.3e-89
UNIPROTKB\|E1C1L4		789	FCHO2 "Uncharacterized protein	0.536	0.373	0.488	6.3e-89
MGI\|MGI:3505790		809	Fcho2 "FCH domain only 2" [Mus	0.541	0.368	0.465	2.7e-88
RGD\|1565396		809	Fcho2 "FCH domain only 2" [Rat	0.541	0.368	0.465	2.7e-88
ZFIN\|ZDB-GENE-050522-228		848	fcho2 "FCH domain only 2" [Dan	0.914	0.593	0.382	4.1e-88
UNIPROTKB\|E1BJV6		852	SGIP1 "Uncharacterized protein	0.505	0.326	0.489	1.1e-86
MGI\|MGI:1920344		806	Sgip1 "SH3-domain GRB2-like (e	0.545	0.372	0.477	1.5e-85

UNIPROTKB\|Q0JRZ9 FCHO2 "FCH domain only protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

 Score = 778 (278.9 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
 Identities = 143/301 (47%), Positives = 208/301 (69%)

Query:   246 NSTLTRSESEFKTSGVSTTNSSRGPSPLTIGMSDTIPLAVAFHEIIHSYFRGTDETRCQV 305
             +S+   S +    +   T   SRGPSP+++G  DT+P+AVA  E +++YF+G D T+C V
Sbjct:   508 SSSSISSSASLSAANTPTVGVSRGPSPVSLGNQDTLPVAVALTESVNAYFKGADPTKCIV 567

Query:   306 KMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPNKQLINIEENKLDKSSDS 365
             K++GDM +SFP+GI+ + TSNP+PA L F+V NIS +E +LPN QL+  + ++ D ++  
Sbjct:   568 KITGDMTMSFPSGIIKVFTSNPTPAVLCFRVKNISRLEQILPNAQLVFSDPSQCDSNTKD 627

Query:   366 MTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPTHT 425
                  NM A++  L+K  EQNP+ASY+NVD+LKYQ+ S  G +S P  L  +WKC  + T
Sbjct:   628 FW--MNMQAVTVYLKKLSEQNPAASYYNVDVLKYQVSSN-GIQSTPLNLATYWKCSASTT 684

Query:   426 DLKVDYKYNNHAMGSPSPLLNVVLAVPVDGEVTNVQAKPNVQWLPETNRAIWKFTDLSQH 485
             DL+VDYKYN  AM +PS L N+ + VPVDG VTN+Q+ P   W  E  +A WK + +S+ 
Sbjct:   685 DLRVDYKYNPEAMVAPSVLSNIQVVVPVDGGVTNMQSLPPAIWNAEQMKAFWKLSSISEK 744

Query:   486 SENHGIGCVKARFELKNGPGTPSTIATQFNCEGTTLSGAEFELIGPGYRVSLVKRKFMSG 545
             SEN G G ++A+F+L  GP  P+T+A QF  EG+TLSG +FEL+G GYR+SL+K++F +G
Sbjct:   745 SENGGSGSLRAKFDLSEGPSKPTTLAVQFLSEGSTLSGVDFELVGTGYRLSLIKKRFATG 804

Query:   546 K 546
             +
Sbjct:   805 R 805

GO:0005905 "coated pit" evidence=IDA

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0072583 "clathrin-mediated endocytosis" evidence=IMP

GO:0048268 "clathrin coat assembly" evidence=IMP

GO:0010324 "membrane invagination" evidence=ISS

GO:0072659 "protein localization to plasma membrane" evidence=ISS

GO:0001786 "phosphatidylserine binding" evidence=ISS

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB\|Q5R807 FCHO2 "FCH domain only protein 2" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MYS2 FCHO2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BUR2 FCHO2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C1L4 FCHO2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:3505790 Fcho2 "FCH domain only 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1565396 Fcho2 "FCH domain only 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050522-228 fcho2 "FCH domain only 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BJV6 SGIP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1920344 Sgip1 "SH3-domain GRB2-like (endophilin) interacting protein 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q502I9	FCHO2_DANRE	No assigned EC number	0.5122	0.5054	0.3278	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		550
cd09265		258	cd09265, AP_Syp1_like_MHD, Mu-homology domain (MHD	1e-125
cd09267		267	cd09267, FCHo2_MHD, mu-homology domain (MHD) of F-	1e-96
cd09266		261	cd09266, SGIP1_MHD, mu-homology domain (MHD) of Sc	7e-84
cd09268		259	cd09268, FCHo1_MHD, mu-homology domain (MHD) of F-	2e-75
pfam10291		251	pfam10291, muHD, Muniscin C-terminal mu homology d	5e-75
cd09257		246	cd09257, AP_muniscins_like_MHD, Mu-homology domain	7e-26
cd09264		253	cd09264, AP_Syp1_MHD, mu-homology domain (MHD) of	3e-10
cd07954		239	cd07954, AP_MHD_Cterm, C-terminal domain of adapto	6e-07

>gnl\|CDD\|211376 cd09265, AP_Syp1_like_MHD, Mu-homology domain (MHD) of endocytic adaptor protein (AP), Syp1	Back alignment and domain information

 Score =  367 bits (943), Expect = e-125
 Identities = 147/263 (55%), Positives = 190/263 (72%), Gaps = 5/263 (1%)

Query: 282 PLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISH 341
           P+AVAF E +H+YF+GTD T+C VK++G++M+SFPAGIV  LTSNPSPA L F++ N S 
Sbjct: 1   PVAVAFTETVHAYFKGTDSTKCIVKITGEVMMSFPAGIVRALTSNPSPAPLSFRLKNASR 60

Query: 342 IENMLPNKQLINIEENKLDKSSDSMTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQI 401
           IE++LPN QLI    +     +++    FNM+AL++ L+KQ EQNP ASY+NVD+LKYQ+
Sbjct: 61  IESVLPNAQLI--FSDPSQSDAETKDFWFNMTALTTWLKKQAEQNPDASYYNVDVLKYQV 118

Query: 402 KSKPGAESCPFQLVAHWKCEPTHTDLKVDYKYNNHAMGSPSPLLNVVLAVPVDGEVTNVQ 461
              PG +S P QL ++WKCEP+ TDL+VDYKYN  AM   +PLLNV  +VPVDG VTNVQ
Sbjct: 119 SP-PGPQSPPLQLTSYWKCEPSSTDLRVDYKYNTDAMAIATPLLNVQFSVPVDGGVTNVQ 177

Query: 462 AKPNVQWLPETNRAIWKFTDLSQHSENHGIGCVKARFELKNGPGTPSTIATQFNCEGTTL 521
           ++PN  W  E NR  WK  ++S+     G G +KAR  L  GP  PS +A QF  EGTTL
Sbjct: 178 SEPNATWNAEQNRLSWKLPEISR--NGGGSGSLKARLSLSEGPSKPSQLAVQFQSEGTTL 235

Query: 522 SGAEFELIGPGYRVSLVKRKFMS 544
           SG +FEL+G GYR+SLVKR+F S
Sbjct: 236 SGVDFELVGSGYRLSLVKRRFAS 258

This family corresponds to the MHD found in the metazoan counterparts of yeast Syp1, which includes two ubiquitously expressed membrane-sculpting F-BAR domain-containing Fer/Cip4 homology domain-only proteins 1 and 2 (FCH domain only 1 and 2, or FCHo1/FCHo2), neuronal-specific SH3-containing GRB2-like protein 3-interacting protein 1 (SGIP1), and related uncharacterized proteins. FCHo1/FCHo2 represent key initial proteins ultimately controlling cellular nutrient uptake, receptor regulation, and synaptic vesicle retrieval. They are required for plasma membrane clathrin-coated vesicle (CCV) budding and marked sites of CCV formation. They bind specifically to the plasma membrane and recruit the scaffold proteins eps15 and intersectin, which subsequently engage the adaptor complex AP2 and clathrin, leading to coated vesicle formation. Both FCHo1/FCHo2 contain an N-terminal EFC/F-BAR domain that induces membrane tabulation, a proline-rich domain (PRD) in the middle region, and a C-terminal MHD responsible for the binding of eps15 and intersectin. Another mammalian neuronal-specific protein, neuronal-specific transcript Scr homology 3 (SH3)-domain growth factor receptor-bound 2 (GRB2)-like (endophilin) interacting protein 1 [SGIP1] does not contain EFC/F-BAR domain, but does have a PRD and a C-terminal MHD and has been classified into this family as well. SGIP1 is an endophilin-interacting protein that plays an obligatory role in the regulation of energy homeostasis. It is also involved in clathrin-mediated endocytosis by interacting with phospholipids and eps15. Length = 258

>gnl\|CDD\|211378 cd09267, FCHo2_MHD, mu-homology domain (MHD) of F-BAR domain-containing Fer/Cip4 homology domain-only protein 2 (FCH domain only 2 or FCHo2) and similar proteins	Back alignment and domain information

>gnl\|CDD\|211377 cd09266, SGIP1_MHD, mu-homology domain (MHD) of Scr homology 3 (SH3)-domain growth factor receptor-bound 2 (GRB2)-like (endophilin) interacting protein 1 (also known as endophilin-3-interacting protein, SGIP1) and similar proteins	Back alignment and domain information

>gnl\|CDD\|211379 cd09268, FCHo1_MHD, mu-homology domain (MHD) of F-BAR domain-containing Fer/Cip4 homology domain-only protein 1 (FCH domain only 1 or FCHo1, also known as KIAA0290) and similar proteins	Back alignment and domain information

>gnl\|CDD\|220677 pfam10291, muHD, Muniscin C-terminal mu homology domain	Back alignment and domain information

>gnl\|CDD\|211368 cd09257, AP_muniscins_like_MHD, Mu-homology domain (MHD) of muniscins adaptor proteins (AP) and similar proteins	Back alignment and domain information

>gnl\|CDD\|211375 cd09264, AP_Syp1_MHD, mu-homology domain (MHD) of adaptor protein (AP), Syp1, and related proteins	Back alignment and domain information

>gnl\|CDD\|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		550
PF10291		257	muHD: Muniscin C-terminal mu homology domain; Inte	100.0
KOG2398\|consensus		611		99.69
PF00928		262	Adap_comp_sub: Adaptor complexes medium subunit fa	99.39
KOG0937\|consensus		424		98.15
KOG2635\|consensus		512		98.06
KOG2740\|consensus		418		97.53
KOG0938\|consensus		446		95.9

>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans	Back alignment and domain information

Probab=100.00  E-value=2.4e-68  Score=533.73  Aligned_cols=244  Identities=44%  Similarity=0.758  Sum_probs=179.4

Q ss_pred             cceeEEEEEEEEEEEeCCcceeeeEEEEEEEEEeecCCccccccCCCCCcceEEEEcCCccccccccCcccccccccccC
Q psy11046        281 IPLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPNKQLINIEENKLD  360 (550)
Q Consensus       281 ~pLaaSI~EtVNA~Fkgg~~skc~VkVtGElaLSFpa~iv~~lt~np~p~~l~fRL~n~s~LEkv~PN~~~I~~~~~~sq  360 (550)
                      +||||||+|+||||||||++++  |+|+|||+|+|++++.+.++.   +.+++|||+|+++||+|+||++||++.   ++
T Consensus         1 ~gl~asi~E~VnA~Fk~g~~~~--v~v~GEv~ls~~~~~~~~~~~---~~~l~~rl~n~~~le~i~pN~~~v~~~---~~   72 (257)
T PF10291_consen    1 PGLNASITETVNAYFKGGQLSK--VKVTGEVALSYPAGISSSLTS---PPPLSFRLNNFSRLEKIAPNPQFVSSS---SQ   72 (257)
T ss_dssp             -EEEEEEEEEEEEEEETTEEEE--EEEEEEEEEEEE--SSS--------SEEEEEEETGGGEEEEEE-TTTE--E---EE
T ss_pred             CceeEEEEEEEEEEEECCcEEE--EEEEEEEEEecCCChhhcccC---CCcEEEEEcCcchhceeecCHhHeecC---CC
Confidence            5999999999999999999987  789999999999999987765   789999999999999999999999642   12


Q ss_pred             CCCCCccEEEechhHHHHHHHhhccCCCCccceeeeEEEEEecCCCC-CCCCeeEEEEeecCCCceeEEEEEEeCCCCCC
Q psy11046        361 KSSDSMTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGA-ESCPFQLVAHWKCEPTHTDLKVDYKYNNHAMG  439 (550)
Q Consensus       361 s~~~~~~F~~nm~~L~s~L~k~aeqnPtasy~nv~~lKYqV~~~~g~-~~~PL~L~p~WKcE~~qTsv~IdYk~Np~~~~  439 (550)
                      +   +++|+|||++|++++++             .+|||||+.+.+. .++||+|+++||||++|++|+|+|++||+.+.
T Consensus        73 ~---~~~f~~n~~~l~~~~~~-------------~alKYqv~~~~~~~~~~Pl~l~~~Wk~e~~~tsl~l~Y~~Np~~~~  136 (257)
T PF10291_consen   73 S---DGEFWLNMSALTSHLPK-------------QALKYQVHSDPSNLSSVPLILKPVWKCEPSQTSLILDYKLNPDAFA  136 (257)
T ss_dssp             E---TTEEEE-TTTTBT-E-E-------------EEEEEEEES--------SEEEEEEEEE-SSEEEEEEEEEE-TTT--
T ss_pred             C---CCcEEEehHHhhhhhhh-------------ceEEEEEeccccccCCCCeEEEeEEEeCCceEEEEEEEEeChhhcc
Confidence            1   35799999999876433             5799999984433 89999999999999999999999999997666


Q ss_pred             CCcceeeEEEEEeeCCC-eeeeeecCcccccCCCceeeEecCCccCCCCCCCceeEEEEEeccCCCCCcCeEEEEEEEc-
Q psy11046        440 SPSPLLNVVLAVPVDGE-VTNVQAKPNVQWLPETNRAIWKFTDLSQHSENHGIGCVKARFELKNGPGTPSTIATQFNCE-  517 (550)
Q Consensus       440 ~~~~L~NV~v~vpvdg~-vT~aqSkP~gtwn~e~~ri~WklpeLs~~se~~g~G~L~ARF~~t~G~~~Ps~VavqF~~e-  517 (550)
                      .+.+|+||+|+|+|||+ |++|||||+|+|++|++||+|||+||+++++.++ |+|+|||++.+++.+|++|+|||.|+ 
T Consensus       137 ~~~~L~nv~~~v~l~g~~~ts~~skP~g~~~~e~~ri~Wrl~el~~~~~~~~-~kL~ARf~~~~~~~~p~~v~vkF~~~~  215 (257)
T PF10291_consen  137 SPVPLENVVFSVPLDGGRATSAQSKPQGTWNKEKNRITWRLPELSLTSEGEG-GKLIARFMTSGGPSRPGGVEVKFEIEG  215 (257)
T ss_dssp             E-EEEEEEEEEEEB-SS-EEEEEESSS--B-SSS-EEEEE-SSEEEETT----EEEEEEEEESS----SS-EEEEEEE--
T ss_pred             ccceeeeEEEEEEcCCccccccccCCCccccCCCcEEEEECCcccccCCCCC-ceEEEEEECCCCCCCCceEEEEEEEcC
Confidence            66899999999999999 9999999999999999999999999999887555 99999999987777999999999999 


Q ss_pred             CCCcCCceEEEc---------cCceeEeeeeEEeeeeeeee
Q psy11046        518 GTTLSGAEFELI---------GPGYRVSLVKRKFMSGKLVL  549 (550)
Q Consensus       518 gstlSGv~iel~---------gsgyr~slvkrrf~sGkYi~  549 (550)
                      |.++||++|+++         |++|++++|||||++|||+|
T Consensus       216 ~~~~sg~~i~~~~~~~~~dp~~~~w~~~~~~r~~~sGkY~~  256 (257)
T PF10291_consen  216 GSTLSGLGISLVYQDDEEDPPGGGWRLVLVKRKLVSGKYIA  256 (257)
T ss_dssp             -S-SS----EEEEEESSS-TT----EE-EEEEEEEEEEEE-
T ss_pred             CCcccCcEEEEeecccccCCCCCcceEEEEEEEEeeeEEec
Confidence            889999999999         88999999999999999998

This C-terminal domain is structurally similar to mu homology domains, and is the region of the muniscin proteins involved in the interactions with the endocytic adaptor-scaffold proteins Ede1-eps15. This interaction influences muniscin localisation. The muniscins provide a combined adaptor-membrane-tubulation activity that is important for regulating endocytosis.; PDB: 3G9H_A.

>KOG2398\|consensus	Back alignment and domain information

>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0937\|consensus	Back alignment and domain information

>KOG2635\|consensus	Back alignment and domain information

>KOG2740\|consensus	Back alignment and domain information

>KOG0938\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		550
3g9h_A		328	Suppressor of yeast profilin deletion; SYP1, MU, a	1e-63
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-12

>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Length = 328	Back alignment and structure

 Score =  210 bits (536), Expect = 1e-63
 Identities = 60/360 (16%), Positives = 118/360 (32%), Gaps = 66/360 (18%)

Query: 210 PPKQTARMTPTLTSSTISLPRPPSRRSEGRGHISPLNSTLTRSESEFKTSGVSTTNSSRG 269
               ++ + P    S ++  RP S           L+S +T    E       ++ S  G
Sbjct: 7   HHHHSSGLVPR--GSHMASERPVS----------TLSSQITGELRELNPQATGSSTSLVG 54

Query: 270 PSPLTIGMSD--TIPLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNP 327
            S       D     L  +  E++++ F+       Q+   G++ L++       + ++P
Sbjct: 55  QSLFQHSSLDTSQFGLNASIAEVLNASFKDGMLQNSQL--IGEIALNYLPNS---VMNSP 109

Query: 328 SPAQLKFKVSNISHIENMLPNKQLINIEENKLDKSSDSMTCEFNMSALSSLLRKQCEQNP 387
            P  +  +++N +  E ++ N+  I                + N S + S          
Sbjct: 110 LPIGINLRINNGAKFEKVILNQAFIE--------RVAPEEFKVNPSFIDS---------- 151

Query: 388 SASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPTHTDLKVDYKYNNH--AMGSPSPLL 445
                 +  +KY IK        P  +   W+ E     + +  K +       S   + 
Sbjct: 152 ----RTLGAIKYSIKE----PIAPIVIHPVWRFESHQASVVLTVKMSPSLPDEISQIVIE 203

Query: 446 NVVLAVPVDG-EVTNVQAKPNVQWLPETNRAIWKFTDLSQHSENHGIGCVKARFELK-NG 503
           ++V+ V +DG   T+  +KP   +  E  R  W+F +    + N     + ARF      
Sbjct: 204 DLVVFVNIDGANATSALSKPQGSFSKEKKRITWRFKEPVVLTRNGEGQRLIARFITDGLA 263

Query: 504 PGTPSTIATQFNCEGTTLSGAEFELIGPGYRVSL-----------------VKRKFMSGK 546
             +   + T+F    T          G G  ++                   KR   +G 
Sbjct: 264 HESAKGVITKFTISETDNVALPHSGAGSGITLTCQELDENNPFGGEWLDVNTKRTLTTGN 323

PyMOL of 3g9h

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		550
3g9h_A		328	Suppressor of yeast profilin deletion; SYP1, MU, a	100.0
1i31_A		314	Clathrin coat assembly protein AP50; beta-sandwich	99.15
4en2_M		266	AP-1 complex subunit MU-1; human immunodeficiency	99.14
3l81_A		301	AP-4 complex subunit MU-1; immunoglobulin-like bet	99.08
2vgl_M		435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	99.07
1w63_M		423	Adaptor-related protein complex 1, MU 1 subunit; e	99.07
3ml6_A		385	Chimeric complex between protein dishevlled2 HOMO	99.01

>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=1.3e-62  Score=503.28  Aligned_cols=238  Identities=21%  Similarity=0.346  Sum_probs=210.8

Q ss_pred             CCcceeEEEEEEEEEEEeCCcceeeeEEEEEEEEEeecCCccccccCCCCCcceEEEEcCCccccccccCcccccccccc
Q psy11046        279 DTIPLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPNKQLINIEENK  358 (550)
Q Consensus       279 d~~pLaaSI~EtVNA~Fkgg~~skc~VkVtGElaLSFpa~iv~~lt~np~p~~l~fRL~n~s~LEkv~PN~~~I~~~~~~  358 (550)
                      ...||||||+|+||||||||+++||+  |+|||+|+|++++   +++++.++.++|||+|+++||||+||++||+...  
T Consensus        66 ~~pGLnASI~E~VNA~Fkgg~~tk~~--v~GEiaLsy~~~~---~s~~p~p~~l~fRL~N~~~Lekv~pN~~fv~~~~--  138 (328)
T 3g9h_A           66 SQFGLNASIAEVLNASFKDGMLQNSQ--LIGEIALNYLPNS---VMNSPLPIGINLRINNGAKFEKVILNQAFIERVA--  138 (328)
T ss_dssp             -CCEEEEEEEEEEEEEEETTEEEEEE--EEEEEEEEEECCS---SSCCCCCSEEEEEEETGGGEEEEEECTTTEEEEE--
T ss_pred             CCCceeEEEEEEEEEEEECCcEEEEE--EEEEEEEecCCCc---cccCCCCccEEEEecCcchhheeeCCHHHhccCC--
Confidence            46799999999999999999999985  9999999999987   4567788999999999999999999999998532  


Q ss_pred             cCCCCCCccEEEechhHHHHHHHhhccCCCCccceeeeEEEEEecCCCCCCCCeeEEEEeecCCCceeEEEEEEeCCCCC
Q psy11046        359 LDKSSDSMTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPTHTDLKVDYKYNNHAM  438 (550)
Q Consensus       359 sqs~~~~~~F~~nm~~L~s~L~k~aeqnPtasy~nv~~lKYqV~~~~g~~~~PL~L~p~WKcE~~qTsv~IdYk~Np~~~  438 (550)
                            +++|||||++|++              ..+++|||||+.    ++|||+|+++||||++||+|+|+|+|||+++
T Consensus       139 ------~~eF~vn~~~L~s--------------ktv~~lKYqVs~----~~~PL~l~p~WK~E~~qtsliI~Yk~NP~~~  194 (328)
T 3g9h_A          139 ------PEEFKVNPSFIDS--------------RTLGAIKYSIKE----PIAPIVIHPVWRFESHQASVVLTVKMSPSLP  194 (328)
T ss_dssp             ------TTEEEECTTTTBT--------------CEEEEEEEEEES----CCCSEEEEEEEEECSSEEEEEEEEEECTTSC
T ss_pred             ------CCCEEEchHHhcc--------------cceeeEEEEECC----CCCCeEEEeeeecCCCeeEEEEEEEECCCCc
Confidence                  4799999999852              248999999974    7999999999999999999999999999865


Q ss_pred             C--CCcceeeEEEEEeeCC-CeeeeeecCcccccCCCceeeEecCC-ccCCCCCCCceeEEEEEeccCCCCCcCe--EEE
Q psy11046        439 G--SPSPLLNVVLAVPVDG-EVTNVQAKPNVQWLPETNRAIWKFTD-LSQHSENHGIGCVKARFELKNGPGTPST--IAT  512 (550)
Q Consensus       439 ~--~~~~L~NV~v~vpvdg-~vT~aqSkP~gtwn~e~~ri~Wklpe-Ls~~se~~g~G~L~ARF~~t~G~~~Ps~--Vav  512 (550)
                      .  .+.+|+||+|+|+||| .||+||+||+|+||+|++||+|||+| |+++. +++.|+|+|||++ +|++.|.+  |+|
T Consensus       195 ~~~~~~~L~Nv~~~V~ldGa~ats~qskP~gtwn~e~~ri~Wkl~e~l~l~~-~g~~gkLiARf~~-~g~~~~~~~gV~a  272 (328)
T 3g9h_A          195 DEISQIVIEDLVVFVNIDGANATSALSKPQGSFSKEKKRITWRFKEPVVLTR-NGEGQRLIARFIT-DGLAHESAKGVIT  272 (328)
T ss_dssp             TTCCEEEEEEEEEEEEBCSSCEEEEEESSSCCBCSSSCEEEEECSSCEEEET-TCCCEEEEEEEEE-SSCCCBCSSCEEE
T ss_pred             CcCCCceeeeEEEEEEeCCCceeEEEecCCceeccccCEEEEECCCCccccc-CCCCCeEEEEEEc-CCCCCCCCCcEEE
Confidence            4  3679999999999999 69999999999999999999999999 66654 2235999999998 89987766  999


Q ss_pred             EEEEcCCC---------cCCceEEE--------ccCceeEeeeeEEeeeeeeee
Q psy11046        513 QFNCEGTT---------LSGAEFEL--------IGPGYRVSLVKRKFMSGKLVL  549 (550)
Q Consensus       513 qF~~egst---------lSGv~iel--------~gsgyr~slvkrrf~sGkYi~  549 (550)
                      ||.|+|.+         +|||.|+.        +++.|..+.+.||+++|||++
T Consensus       273 kF~~~~~~~~~~~~~~~gsgi~i~~~~~~~~dPF~~~W~~v~~~r~l~~G~Y~~  326 (328)
T 3g9h_A          273 KFTISETDNVALPHSGAGSGITLTCQELDENNPFGGEWLDVNTKRTLTTGNYHG  326 (328)
T ss_dssp             EEEECCCSCSSCTTTTCSCCCEEEEEEESSSCTTCCCCEECEEEEEEEEEEEEE
T ss_pred             EEEEeCCCcccccccccCCceeEEecccccCCCCcCcccccceEEEEeeeEEEe
Confidence            99999874         78998873        334699999999999999986

PyMOL of 3g9h

>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A	Back alignment and structure

>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A	Back alignment and structure

>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}	Back alignment and structure

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M	Back alignment and structure

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		550
d2pr9a1		277	Second domain of Mu2 adaptin subunit (ap50) of ap2	99.18

>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=2.4e-09  Score=104.15  Aligned_cols=236  Identities=17%  Similarity=0.217  Sum_probs=138.3

Q ss_pred             eeEEEEEEEEEEE-eCCcceeeeEEEEEEEEEeecCCccccccCCCCCcceEEEEcCCccccccccC-cccccccccccC
Q psy11046        283 LAVAFHEIIHSYF-RGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPN-KQLINIEENKLD  360 (550)
Q Consensus       283 LaaSI~EtVNA~F-kgg~~skc~VkVtGElaLSFpa~iv~~lt~np~p~~l~fRL~n~s~LEkv~PN-~~~I~~~~~~sq  360 (550)
                      +-.-|+|.|+|.+ ++|.+..|.  |.|+|.+.       .+-+  ..+.+.+.|++...+.+..-. ..... ...+..
T Consensus        15 i~vDV~E~i~~~~~~~G~~~~~~--V~G~I~~~-------s~Ls--G~P~~~l~Ln~~~~~~~~~~~~~~~~~-~~~~~~   82 (277)
T d2pr9a1          15 LFLDVLESVNLLMSPQGQVLSAH--VSGRVVMK-------SYLS--GMPECKFGMNDKIVIEKQGKGTADETS-KSGKQS   82 (277)
T ss_dssp             EEEEEEEEEEEEECTTSCEEEEE--EEEEEEEE-------EECS--SSCEEEEEESBC-------------------CCC
T ss_pred             EEEEEEEEEEEEECCCCCEEEEE--EEEEEEEE-------EecC--CCCeEEEEecchhhccccccccccccc-ccccCc
Confidence            3456999999999 688888875  99999873       1111  223677888765433321110 00000 000000


Q ss_pred             CCCCCccEE--EechhHHHHHHHhhccCCCCccc----eeeeEEEEEecCCCCCCCCeeEEEEee-cCCCceeEEEEEEe
Q psy11046        361 KSSDSMTCE--FNMSALSSLLRKQCEQNPSASYF----NVDILKYQIKSKPGAESCPFQLVAHWK-CEPTHTDLKVDYKY  433 (550)
Q Consensus       361 s~~~~~~F~--~nm~~L~s~L~k~aeqnPtasy~----nv~~lKYqV~~~~g~~~~PL~L~p~WK-cE~~qTsv~IdYk~  433 (550)
                      ...++..|+  +|++..        +++-..+|.    ...+|+|++..+   ...||.+.+... ...+..++.|.++.
T Consensus        83 ~~l~d~~fH~cV~~~~f--------~~~~~i~F~PPdG~F~Lm~Y~~~~~---~~~P~~i~~~~~~~~~~~~~~~i~l~~  151 (277)
T d2pr9a1          83 IAIDDCTFHQCVRLSKF--------DSERSISFIPPDGEFELMRYRTTKD---IILPFRVIPLVREVGRTKLEVKVVIKS  151 (277)
T ss_dssp             BCCSEEEECTTSBCC-------------CCEEECCCSEEEEEEEEEECSS---CCCCEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             eEccceeeeeccccccc--------cccceEeecCCCCcEEEEEEEcCCC---cCCCcEEEEEEEeccCcEEEEEEEEEe
Confidence            011111111  111111        000011111    345799999753   578888876443 33344577777777


Q ss_pred             CCCCCCCCcceeeEEEEEeeCCCeeeeeecCc---ccccCCCceeeEecCCccCCCCCCCceeEEEEEeccCCCCCc---
Q psy11046        434 NNHAMGSPSPLLNVVLAVPVDGEVTNVQAKPN---VQWLPETNRAIWKFTDLSQHSENHGIGCVKARFELKNGPGTP---  507 (550)
Q Consensus       434 Np~~~~~~~~L~NV~v~vpvdg~vT~aqSkP~---gtwn~e~~ri~WklpeLs~~se~~g~G~L~ARF~~t~G~~~P---  507 (550)
                      +-   .....++||.|.+|+-..++++.....   +.|..+++.+.|+|+.+....    .-.|.++|.+..+...+   
T Consensus       152 ~~---~~~~~~~~v~I~iP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~k~~~~~----~~~l~~~~~~~~~~~~~~~~  224 (277)
T d2pr9a1         152 NF---KPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK----ESQISAEIELLPTNDKKKWA  224 (277)
T ss_dssp             CS---CTTCEEEEEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEEETTC----EEEEEEEEEECCCCSSSCCC
T ss_pred             cc---CCCeeeeEEEEEeeCCCcccCceEEecCceEEEeccCCEEEEecccccCCc----cceEEEEEEeccCCCCcccc
Confidence            63   224678999999999766666554433   668999999999999886543    35789999886554332   


Q ss_pred             -CeEEEEEEEcCCCcCCceEEE---cc-----CceeE-eeeeEEeeeeeeee
Q psy11046        508 -STIATQFNCEGTTLSGAEFEL---IG-----PGYRV-SLVKRKFMSGKLVL  549 (550)
Q Consensus       508 -s~VavqF~~egstlSGv~iel---~g-----sgyr~-slvkrrf~sGkYi~  549 (550)
                       .+|.|+|.+. -+.||+.|+-   .+     ++|+. .-||....+|.|..
T Consensus       225 ~~pi~v~F~ip-~t~Sgl~V~~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~~  275 (277)
T d2pr9a1         225 RPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYET  275 (277)
T ss_dssp             CCCEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGSEEEEEEEEEEEEEEE
T ss_pred             CCcEEEEEEec-ccccceEEEEEEEeccccCCCCCCCCCCEEEEEECCCEEE
Confidence             3599999997 5799998863   21     23533 35777778999964

PyMOL of d2pr9a1