Psyllid ID: psy11047
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 943 | 2.2.26 [Sep-21-2011] | |||||||
| P22781 | 480 | Aromatic-L-amino-acid dec | yes | N/A | 0.481 | 0.945 | 0.407 | 1e-113 | |
| P20711 | 480 | Aromatic-L-amino-acid dec | yes | N/A | 0.481 | 0.945 | 0.392 | 1e-108 | |
| P27718 | 487 | Aromatic-L-amino-acid dec | yes | N/A | 0.493 | 0.954 | 0.402 | 1e-107 | |
| Q05733 | 847 | Histidine decarboxylase O | yes | N/A | 0.144 | 0.160 | 0.737 | 1e-105 | |
| P80041 | 486 | Aromatic-L-amino-acid dec | yes | N/A | 0.475 | 0.921 | 0.394 | 1e-104 | |
| O96567 | 510 | Aromatic-L-amino-acid dec | N/A | N/A | 0.492 | 0.909 | 0.386 | 1e-100 | |
| P05031 | 510 | Aromatic-L-amino-acid dec | no | N/A | 0.492 | 0.909 | 0.384 | 1e-100 | |
| P19113 | 662 | Histidine decarboxylase O | no | N/A | 0.212 | 0.302 | 0.597 | 2e-91 | |
| Q5EA83 | 658 | Histidine decarboxylase O | no | N/A | 0.212 | 0.303 | 0.597 | 2e-91 | |
| P23738 | 662 | Histidine decarboxylase O | yes | N/A | 0.212 | 0.302 | 0.593 | 2e-89 |
| >sp|P22781|DDC_CAVPO Aromatic-L-amino-acid decarboxylase OS=Cavia porcellus GN=DDC PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 237/581 (40%), Positives = 309/581 (53%), Gaps = 127/581 (21%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDY+A+YLE I R VYPDV+PGYLR L+P SAP EPE ++ I+GDIE++IMPG+T
Sbjct: 10 GKEMVDYVANYLEGIESRLVYPDVEPGYLRPLIPSSAPEEPETYEDIIGDIERIIMPGVT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SPY AYFP NSYPS+L DML AI+C+GF+WA+SPACTELE + ++WLGKM+ LP
Sbjct: 70 HWNSPYFFAYFPTANSYPSMLADMLCGAISCIGFSWAASPACTELETVMLDWLGKMLRLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
+ FL GGGV+Q +ASE+TL+ LLA RT+ IR+ Q + PEL A I +LVAY S
Sbjct: 130 DAFLAGNAGM-GGGVIQGSASEATLVALLAARTKVIRRLQAASPELTQAAIMEKLVAYAS 188
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVE+AGLIG V M+ I SD ++R L EA+ERDK LIPFF+ + L
Sbjct: 189 DQAHSSVERAGLIGGVRMKLIPSDSNFAMRASALREALERDKAAGLIPFFVVATLG---- 244
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427
+ CC +++ G P + +A G F
Sbjct: 245 ---TTNCCSFDSLLEVG--------------------PICNQEEMWLHIDAAYAGSA-FI 280
Query: 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVP---- 483
P RHL + G+ A +F P
Sbjct: 281 CPEFRHL-----------------------------------LDGVEFADSFNFNPHKWL 305
Query: 484 -----SSLLRVKNSGALHRTFNVEPLYLR--HENSGLAIDYMHWQIPLSKRFRALKLWFV 536
S + VK L F ++P+YL+ H++SGL DY HWQIPL +RFR+LK+WFV
Sbjct: 306 LVNFDCSAMWVKQRTDLIGAFKLDPVYLKHGHQDSGLITDYRHWQIPLGRRFRSLKMWFV 365
Query: 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS 596
R +GIKGLQ HIR
Sbjct: 366 FRMYGIKGLQAHIR---------------------------------------------- 379
Query: 597 YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 656
+ V+LA +FE+LV DPRFEI LG+V RL G N L E LLKR+NS ++H
Sbjct: 380 -----KHVQLAHEFESLVRQDPRFEICMEVTLGLVCFRLKGSNQLNETLLKRINSARKIH 434
Query: 657 CVPASLRIQGLGRAQNFTRTT-NDDITRDWNEIRNTATEIL 696
VP LR + + R + +R +D + + W IR A+ +L
Sbjct: 435 LVPCHLRDKFVLRFRICSRQVESDHVQQAWQHIRQLASSVL 475
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Cavia porcellus (taxid: 10141) EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 8 |
| >sp|P20711|DDC_HUMAN Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1 SV=2 | Back alignment and function description |
|---|
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 228/581 (39%), Positives = 307/581 (52%), Gaps = 127/581 (21%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDY+A+Y+E I R+VYPDV+PGYLR L+P +AP EP+ ++ I+ D+EK+IMPG+T
Sbjct: 10 GKEMVDYMANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKIIMPGVT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SPY AYFP +SYP++L DML AI C+GF+WA+SPACTELE + M+WLGKM+ LP
Sbjct: 70 HWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLELP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
+ FL+ K GGGV+Q +ASE+TL+ LLA RT+ I + Q + PEL A I +LVAY S
Sbjct: 130 KAFLNEKAGE-GGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSS 188
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVE+AGLIG V ++ I SD ++R L EA+ERDK LIPFF+ + L
Sbjct: 189 DQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLG---- 244
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427
+ CC +F N +L P + +A G F
Sbjct: 245 ---TTTCC-------------------SFDN-LLEVGPICNKEDIWLHVDAAYAGSA-FI 280
Query: 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVP---- 483
P RHL + G+ A +F P
Sbjct: 281 CPEFRHL-----------------------------------LNGVEFADSFNFNPHKWL 305
Query: 484 -----SSLLRVKNSGALHRTFNVEPLYLR--HENSGLAIDYMHWQIPLSKRFRALKLWFV 536
S + VK L F ++P YL+ H++SGL DY HWQIPL +RFR+LK+WFV
Sbjct: 306 LVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFV 365
Query: 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS 596
R +G+KGLQ +IR
Sbjct: 366 FRMYGVKGLQAYIR---------------------------------------------- 379
Query: 597 YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 656
+ V+L+ +FE+LV DPRFEI LG+V RL G N + E LL+R+NS ++H
Sbjct: 380 -----KHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNEALLQRINSAKKIH 434
Query: 657 CVPASLRIQGLGRAQNFTRTTND-DITRDWNEIRNTATEIL 696
VP LR + + R +RT + R W I+ A ++L
Sbjct: 435 LVPCHLRDKFVLRFAICSRTVESAHVQRAWEHIKELAADVL 475
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|P27718|DDC_BOVIN Aromatic-L-amino-acid decarboxylase OS=Bos taurus GN=DDC PE=2 SV=2 | Back alignment and function description |
|---|
Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust.
Identities = 238/592 (40%), Positives = 307/592 (51%), Gaps = 127/592 (21%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDY+ADYLE I R+V+PDV PGYLR L+P +AP EPE ++ I+ DIEK+IMPG+T
Sbjct: 10 GKEMVDYVADYLEGIEGRQVFPDVDPGYLRPLIPTTAPQEPETFEAIIEDIEKIIMPGVT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SPY AYFP +SYP++L DML AI C+GF+WA+SPACTELE + M+WLGKM+ LP
Sbjct: 70 HWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FL + GGGV+Q TASE+TL+ LLA RT+ R Q + PEL A I +LVAY S
Sbjct: 130 EAFLAGEAGE-GGGVIQGTASEATLVALLAARTKVTRHLQAASPELMQAAIMEKLVAYAS 188
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLIG V ++ I SD K ++R L EA+ERDK LIPFF+ + L
Sbjct: 189 DQAHSSVEKAGLIGGVRLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLG---- 244
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427
+ CC +F N +L P L +A G F
Sbjct: 245 ---TTSCC-------------------SFDN-LLEVGPICHEEGLWLHVDAAYAGSA-FI 280
Query: 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVP---- 483
P RHL + G+ A +F P
Sbjct: 281 CPEFRHL-----------------------------------LNGVEFADSFNFNPHKWL 305
Query: 484 -----SSLLRVKNSGALHRTFNVEPLYLR--HENSGLAIDYMHWQIPLSKRFRALKLWFV 536
S + VK L F ++P+YLR H++SGL DY HWQ+PL +RFR+LK+WFV
Sbjct: 306 LVNFDCSAMWVKKRTDLTGAFRLDPVYLRHSHQDSGLITDYRHWQLPLGRRFRSLKMWFV 365
Query: 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS 596
R +G+KGLQ +IR
Sbjct: 366 FRMYGVKGLQAYIR---------------------------------------------- 379
Query: 597 YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 656
+ V+L+ FEALV D RFEI A LG+V RL G N L E LL+ +NS ++H
Sbjct: 380 -----KHVQLSHAFEALVRQDTRFEICAEVILGLVCFRLKGSNKLNEALLESINSAKKIH 434
Query: 657 CVPASLRIQGLGRAQNFTRTTN-DDITRDWNEIRNTATEILAELAEETQRVQ 707
VP SLR + + R +RT + W I+ A +L EE ++
Sbjct: 435 LVPCSLRDRFVLRFAICSRTVELAHVQLAWEHIQEMAATVLRAQGEEKAEIK 486
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Bos taurus (taxid: 9913) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|Q05733|DCHS_DROME Histidine decarboxylase OS=Drosophila melanogaster GN=Hdc PE=2 SV=2 | Back alignment and function description |
|---|
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 174/236 (73%), Positives = 202/236 (85%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYIADYLENIR+RRV+PDV PGY+R L+PESAP+E E W I D+E+++MPGIT
Sbjct: 10 GKEMVDYIADYLENIRERRVFPDVSPGYMRQLLPESAPIEGEPWPKIFSDVERIVMPGIT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAYFPALNS PSLLGDML+DAINCLGFTWASSPACTELEII MNWLGKMIGLP
Sbjct: 70 HWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTWASSPACTELEIIVMNWLGKMIGLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
+ FLH S GGGVLQTTASE+TL+CLLAGRT AI+++ + HP + AEIN+RLVAYCS
Sbjct: 130 DAFLHLSSQSQGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINARLVAYCS 189
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363
DQAHSSVEKA LIGLV MRYIE+DD L++RG L EAIE D K+ L+PF++ + L
Sbjct: 190 DQAHSSVEKAALIGLVRMRYIEADDDLAMRGKLLREAIEDDIKQGLVPFWVCATLG 245
|
Required in photoreceptor transmitter synthesis. Drosophila melanogaster (taxid: 7227) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P80041|DDC_PIG Aromatic-L-amino-acid decarboxylase OS=Sus scrofa GN=DDC PE=1 SV=2 | Back alignment and function description |
|---|
Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust.
Identities = 227/575 (39%), Positives = 301/575 (52%), Gaps = 127/575 (22%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDY+ADYLE I R+VYPDV+PGYLR L+P +AP EP+ ++ I+ D+EK+IMPG+T
Sbjct: 10 GKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SPY AYFP +SYP++L DML AI C+GF+WA+SPACTELE + M+WLGKM+ LP
Sbjct: 70 HWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FL + GGGV+Q +ASE+TL+ LLA RT+ +R+ Q + P L + +LVAY S
Sbjct: 130 EAFLAGEAGE-GGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYAS 188
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVE+AGLIG V ++ I SD K ++R L EA+ERDK LIPFF+ + L
Sbjct: 189 DQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLG---- 244
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427
+ CC +F N +L P + +A G F
Sbjct: 245 ---TTSCC-------------------SFDN-LLEVGPICHEEDIWLHVDAAYAGSA-FI 280
Query: 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVP---- 483
P RHL + G+ A +F P
Sbjct: 281 CPEFRHL-----------------------------------LNGVEFADSFNFNPHKWL 305
Query: 484 -----SSLLRVKNSGALHRTFNVEPLYLR--HENSGLAIDYMHWQIPLSKRFRALKLWFV 536
S + VK L F ++P+YL+ H+ SGL DY HWQ+PL +RFR+LK+WFV
Sbjct: 306 LVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFV 365
Query: 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS 596
R +G+KGLQ +IR
Sbjct: 366 FRMYGVKGLQAYIR---------------------------------------------- 379
Query: 597 YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 656
+ V+L+ +FEA VL DPRFE+ A LG+V RL G + L E LL+R+NS ++H
Sbjct: 380 -----KHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIH 434
Query: 657 CVPASLRIQGLGRAQNFTRTTNDDITR-DWNEIRN 690
VP LR Q + R +R R W IR
Sbjct: 435 LVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRG 469
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Sus scrofa (taxid: 9823) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|O96567|DDC_DROSI Aromatic-L-amino-acid decarboxylase OS=Drosophila simulans GN=Ddc PE=3 SV=2 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust.
Identities = 221/572 (38%), Positives = 303/572 (52%), Gaps = 108/572 (18%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
K MVD+IA+YLENIRDRRV P+VKPGYL+ L+P++AP +PEKW +M DIE+VIMPG+T
Sbjct: 45 AKTMVDFIAEYLENIRDRRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVT 104
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SP HAYFP NSYP+++ DMLS AI C+GFTW +SPACTELE++ M+WLGKM+ LP
Sbjct: 105 HWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELP 164
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
EFL GGGV+Q TASESTL+ LL + + +++ ++ HPE + I +LV YCS
Sbjct: 165 AEFLVCSGGK-GGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCS 223
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVE+AGL+G V +R ++S++ +RG L +AIE+D + LIPF+
Sbjct: 224 DQAHSSVERAGLLGGVKLRSVQSENH-RMRGAALEKAIEQDLAEGLIPFY---------- 272
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427
+ LGT F +++ P L +A G F
Sbjct: 273 ----AVVTLGT---TNSCAF----------DYLDECGPVGNKHNLWIHVDAAYAGSA-FI 314
Query: 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLL 487
P RH L+K + S + P + + + PS ++
Sbjct: 315 CPEYRH-----------------LMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVV 357
Query: 488 RVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQK 547
N V+PLYL+H+ G A DY HWQIPL +RFRALKLWFV+R +G++ LQ
Sbjct: 358 NAFN---------VDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQA 408
Query: 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 607
HIR NF A
Sbjct: 409 HIRR-----------------------------------HCNF----------------A 417
Query: 608 QKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL 667
++F L + D RFE+ A ++G+V RL G N E LLKR+N +G +H VPA ++
Sbjct: 418 KQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYF 477
Query: 668 GRAQNFTR-TTNDDITRDWNEIRNTATEILAE 698
R +R T ++D+ W E+ A E+ E
Sbjct: 478 LRMAICSRFTQSEDMEYSWKEVSAAADEMEQE 509
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in individual life span. Drosophila simulans (taxid: 7240) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|P05031|DDC_DROME Aromatic-L-amino-acid decarboxylase OS=Drosophila melanogaster GN=Ddc PE=1 SV=4 | Back alignment and function description |
|---|
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 220/572 (38%), Positives = 303/572 (52%), Gaps = 108/572 (18%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
K MVD+IA+YLENIR+RRV P+VKPGYL+ L+P++AP +PEKW +M DIE+VIMPG+T
Sbjct: 45 AKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVT 104
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SP HAYFP NSYP+++ DMLS AI C+GFTW +SPACTELE++ M+WLGKM+ LP
Sbjct: 105 HWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELP 164
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
EFL GGGV+Q TASESTL+ LL + + +++ ++ HPE + I +LV YCS
Sbjct: 165 AEFLACSGGK-GGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCS 223
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVE+AGL+G V +R ++S++ +RG L +AIE+D + LIPF+
Sbjct: 224 DQAHSSVERAGLLGGVKLRSVQSENH-RMRGAALEKAIEQDVAEGLIPFY---------- 272
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427
+ LGT F +++ P L +A G F
Sbjct: 273 ----AVVTLGT---TNSCAF----------DYLDECGPVGNKHNLWIHVDAAYAGSA-FI 314
Query: 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLL 487
P RH L+K + S + P + + + PS ++
Sbjct: 315 CPEYRH-----------------LMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVV 357
Query: 488 RVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQK 547
N V+PLYL+H+ G A DY HWQIPL +RFRALKLWFV+R +G++ LQ
Sbjct: 358 NAFN---------VDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQA 408
Query: 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 607
HIR NF A
Sbjct: 409 HIRR-----------------------------------HCNF----------------A 417
Query: 608 QKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL 667
++F L + D RFE+ A ++G+V RL G N E LLKR+N +G +H VPA ++
Sbjct: 418 KQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYF 477
Query: 668 GRAQNFTR-TTNDDITRDWNEIRNTATEILAE 698
R +R T ++D+ W E+ A E+ E
Sbjct: 478 LRMAICSRFTQSEDMEYSWKEVSAAADEMEQE 509
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in life span. Drosophila melanogaster (taxid: 7227) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|P19113|DCHS_HUMAN Histidine decarboxylase OS=Homo sapiens GN=HDC PE=1 SV=2 | Back alignment and function description |
|---|
Score = 337 bits (865), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 156/261 (59%), Positives = 195/261 (74%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
G+EMVDYI YL +R+RRV PDV+PGYLR+ +PESAP +P+ WD+I GDIE++IMPG+
Sbjct: 11 GREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVV 70
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAY+PAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 71 HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLP 130
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FLH S GGGVLQ+T SESTLI LLA R I + + S P+ + + +N+RLVAY S
Sbjct: 131 EHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESCLNARLVAYAS 190
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV M+++ DD SLRG+ L +AIE DK++ L+P F+ + L
Sbjct: 191 DQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGV 250
Query: 368 LVVDSYCCLGTAMIVKGLGFY 388
D LG +GL +
Sbjct: 251 CAFDCLSELGPICAREGLWLH 271
|
Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q5EA83|DCHS_BOVIN Histidine decarboxylase OS=Bos taurus GN=HDC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (865), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 156/261 (59%), Positives = 196/261 (75%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYI YL +R+RRV PDV+PGYLR+ +PESAP+EP+ WD+I GDIE++IMPG+
Sbjct: 11 GKEMVDYICQYLTTVRERRVTPDVRPGYLRAQLPESAPMEPDSWDSIFGDIERIIMPGVV 70
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAY+PAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 71 HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLP 130
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FLH S GGGVLQ+T SESTLI LLA R I + + S PE + + +N+RLVAY S
Sbjct: 131 EHFLHHHPGSQGGGVLQSTVSESTLIALLAARKNKILEMKASEPEADESFLNARLVAYAS 190
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV M+++ D+ SLRG+ L +AI+ D+++ L+P F+ + L
Sbjct: 191 DQAHSSVEKAGLISLVKMKFLPVDENFSLRGEALQKAIKEDRERGLVPIFVCATLGTTGV 250
Query: 368 LVVDSYCCLGTAMIVKGLGFY 388
D LG +GL +
Sbjct: 251 CAFDCLSELGPICAREGLWLH 271
|
Bos taurus (taxid: 9913) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P23738|DCHS_MOUSE Histidine decarboxylase OS=Mus musculus GN=Hdc PE=1 SV=2 | Back alignment and function description |
|---|
Score = 331 bits (848), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 155/261 (59%), Positives = 192/261 (73%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYI+ YL +R+R+V P+V+PGYLR+ +P SAP EP+ WD+I GDIE+VIMPG+
Sbjct: 18 GKEMVDYISQYLSTVRERQVTPNVQPGYLRAQLPASAPEEPDSWDSIFGDIERVIMPGVV 77
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAY+PAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 78 HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNIMDWLAKMLGLP 137
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FLH S GGGVLQ+T SESTLI LLA R I + P+ + +N+RLVAY S
Sbjct: 138 EYFLHHHPSSRGGGVLQSTVSESTLIALLAARKNKILAMKACEPDANESSLNARLVAYTS 197
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV +R++ DD SLRG+ L +AIE DK++ L+P F+ + L
Sbjct: 198 DQAHSSVEKAGLISLVKIRFLPVDDNFSLRGEALQKAIEEDKQQGLVPVFVCATLGTTGV 257
Query: 368 LVVDSYCCLGTAMIVKGLGFY 388
D LG +GL +
Sbjct: 258 CAFDRLSELGPICASEGLWLH 278
|
Mus musculus (taxid: 10090) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 943 | ||||||
| 332017715 | 713 | Histidine decarboxylase [Acromyrmex echi | 0.624 | 0.826 | 0.514 | 1e-177 | |
| 50753015 | 664 | PREDICTED: histidine decarboxylase [Gall | 0.511 | 0.725 | 0.439 | 1e-125 | |
| 312378924 | 624 | hypothetical protein AND_09371 [Anophele | 0.387 | 0.584 | 0.566 | 1e-124 | |
| 449471135 | 666 | PREDICTED: histidine decarboxylase [Taen | 0.494 | 0.699 | 0.442 | 1e-124 | |
| 326926647 | 665 | PREDICTED: histidine decarboxylase-like | 0.511 | 0.724 | 0.431 | 1e-124 | |
| 351715490 | 654 | Histidine decarboxylase [Heterocephalus | 0.493 | 0.711 | 0.445 | 1e-124 | |
| 126278245 | 667 | PREDICTED: histidine decarboxylase [Mono | 0.493 | 0.697 | 0.446 | 1e-123 | |
| 291403024 | 661 | PREDICTED: histidine decarboxylase [Oryc | 0.530 | 0.756 | 0.427 | 1e-122 | |
| 449268041 | 653 | Histidine decarboxylase, partial [Columb | 0.489 | 0.707 | 0.438 | 1e-121 | |
| 269785281 | 672 | histidine decarboxylase [Saccoglossus ko | 0.497 | 0.697 | 0.442 | 1e-120 |
| >gi|332017715|gb|EGI58389.1| Histidine decarboxylase [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 363/706 (51%), Positives = 438/706 (62%), Gaps = 117/706 (16%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYIADYL +IR RRVYP V PGYLR+++P SAPV+ E W+ I D+EK IMPG+T
Sbjct: 1 GKEMVDYIADYLRDIRSRRVYPAVSPGYLRNVLPASAPVDGESWEDIFADVEKCIMPGVT 60
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAYFPALNS SLLGDML+DAINCLGFTWASSPACTELE I MNWLGKMIGLP
Sbjct: 61 HWQSPHMHAYFPALNSPASLLGDMLADAINCLGFTWASSPACTELETIIMNWLGKMIGLP 120
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E+FLH S GGGV+QTTASE+TL+CLLA RT AIR Q++ P+ EINSRLVAYCS
Sbjct: 121 EDFLHQSGGSGGGGVIQTTASEATLVCLLAARTRAIRDVQENDPDCLATEINSRLVAYCS 180
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLIGLV MRYI+SD +LS+RGD L+E++ RD+ + L+PFF+ + L
Sbjct: 181 DQAHSSVEKAGLIGLVRMRYIKSDSELSMRGDALLESLTRDRAEGLLPFFVCATLGTTGA 240
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427
D+ +G GL + + FI P+F+S +F + +P
Sbjct: 241 CSFDNLKEIGPICQQNGLWLH-VDAAYAGSAFIC---PEFRSWLQGVEFTDSIAFNPSKW 296
Query: 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLL 487
+ MV + + L R F + P L
Sbjct: 297 L-------MVHFDCTAMWVKNSQALHR-----------------------TFNVDP-LYL 325
Query: 488 RVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQK 547
+ +NSG LAIDYMHWQIPLSKRFRALKLWFVIRN+GI GLQK
Sbjct: 326 KHENSG-------------------LAIDYMHWQIPLSKRFRALKLWFVIRNYGITGLQK 366
Query: 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 607
HIRE VRLA
Sbjct: 367 HIRE---------------------------------------------------GVRLA 375
Query: 608 QKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL 667
QKFEALVL D RFEIPA RHLGMVV RLLGEN LTE+LLK+LNS+GRLHCVPA+L + +
Sbjct: 376 QKFEALVLADARFEIPAPRHLGMVVFRLLGENTLTERLLKKLNSRGRLHCVPAALHGKYV 435
Query: 668 GR-AQNFTRTTNDDITRDWNEIRNTATEILAELAEETQRVQVTKRTRVPLKETKGRNALF 726
R T TTN+DI RDW EIR+TA EIL +T R + R RVPL +T+ +N F
Sbjct: 436 IRFTVTSTNTTNEDILRDWAEIRSTANEILG----DTARSPI--RARVPLADTRQKNENF 489
Query: 727 GSSLLLANSPMSPKIMNGSFAAVFDADESIMNGWTHGIAQIQCDSNDSPSMRRRIRGILM 786
GSSLLLANSPMSPKI+NGSFAA++D + + +I ++ DSP++RRRIRGILM
Sbjct: 490 GSSLLLANSPMSPKIVNGSFAAIYDTAD-VFEECMKTFGKIHLEAKDSPAIRRRIRGILM 548
Query: 787 SGKQFSLDSRMDLISGDNTRTHTTPTSDN-SDKDKLEEYAEAELSQ 831
SGKQFSLDSRMDL+ G + P SD+ S+ ++E +A LS+
Sbjct: 549 SGKQFSLDSRMDLVQG---YVCSRPLSDSPSELSLMKEDEDAGLSE 591
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|50753015|ref|XP_413833.1| PREDICTED: histidine decarboxylase [Gallus gallus] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 259/589 (43%), Positives = 338/589 (57%), Gaps = 107/589 (18%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYI YL N+R+RRV PDV+PGY+R+ +P+SAP++P+ WD I GDIEK+IMPG+
Sbjct: 10 GKEMVDYICQYLSNVRERRVTPDVQPGYMRAQLPDSAPMDPDSWDNIFGDIEKIIMPGVV 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAYFPAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 70 HWQSPHMHAYFPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
++FLH DS GGGVLQ+T SESTL+ LLA R I + + S P+ + + +NSRL+AY S
Sbjct: 130 DKFLHHHPDSVGGGVLQSTVSESTLVALLAARKNKILEMKLSEPDADESSLNSRLIAYAS 189
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV M+++ D+ SLRG+ L +AI D+KK L+P F+ + L
Sbjct: 190 DQAHSSVEKAGLISLVKMKFLPVDENFSLRGETLKKAIAEDRKKGLVPIFVCATLGTTGV 249
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427
DS LG +GL + + F+ F F + + D F
Sbjct: 250 CAFDSLSELGPICGAEGLWLH-IDAAYAGTAFLCPEFRLF--------LDGIEYAD-SFA 299
Query: 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLL 487
++ + MV G + K +LH Q F++ P L
Sbjct: 300 FNPSKWM-MVHFDCTGFWV---------KDKYKLH--------------QTFSVNP-VYL 334
Query: 488 RVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQK 547
R NSGA A+D+MHWQIPLS+RFR+LKLWFVIR+FG+K LQ
Sbjct: 335 RHPNSGA-------------------AVDFMHWQIPLSRRFRSLKLWFVIRSFGVKKLQA 375
Query: 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 607
H+R GT A
Sbjct: 376 HVRH-------------------GT--------------------------------ETA 384
Query: 608 QKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL 667
+ FE+LV DP FEIPA RHLG+VV RL G N LTEKLLK L+S GRL +PA++ + +
Sbjct: 385 KFFESLVRSDPLFEIPAKRHLGLVVFRLKGPNWLTEKLLKELSSSGRLFLIPATIHDKFI 444
Query: 668 GRAQNFTR-TTNDDITRDWNEIRNTATEILAELAEETQRVQVTKRTRVP 715
R ++ TT +DI +DWN I+ TA +I+++ E RV ++P
Sbjct: 445 IRFTVTSQFTTREDILQDWNIIQRTAAQIISQ-HNELHRVSSGDEAKIP 492
|
Source: Gallus gallus Species: Gallus gallus Genus: Gallus Family: Phasianidae Order: Galliformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|312378924|gb|EFR25356.1| hypothetical protein AND_09371 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 237/418 (56%), Positives = 290/418 (69%), Gaps = 53/418 (12%)
Query: 117 RKIPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMG 176
+KIPL + EMVDYIADYL+NIRDRRV+PDV+PGY+R++VPESAP++ E+WD+I G
Sbjct: 42 QKIPLGRNGTISSEMVDYIADYLQNIRDRRVFPDVRPGYMRTMVPESAPLDGEQWDSIFG 101
Query: 177 DIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIIT 236
DIE+VIMPG+THWQSP MHAYFPALNS+PSLLGDML+D INCLGFTWASSPACTELE I
Sbjct: 102 DIERVIMPGVTHWQSPRMHAYFPALNSFPSLLGDMLADGINCLGFTWASSPACTELESIV 161
Query: 237 MNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHA 296
MNWLGKMIGLP+EFLH +S GGGV+QTTASESTL+CLLAGRT AI+++ + P L+ A
Sbjct: 162 MNWLGKMIGLPDEFLHLSPNSKGGGVIQTTASESTLVCLLAGRTVAIQRFHEHTPGLQDA 221
Query: 297 EINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPF 356
EIN+RLVAYCS+QAHSSVEKA LIGLV MR+IESD++LSLRG L +AIE D ++ L+PF
Sbjct: 222 EINARLVAYCSEQAHSSVEKAALIGLVRMRFIESDEQLSLRGAALRDAIEEDIRQGLVPF 281
Query: 357 FIFSGLALPAFLVVDSY-----CC-------------LGTAMI-------VKGLG----- 386
++ + L D+ C G+A I +KG+
Sbjct: 282 WVCATLGTTGACAFDNLEEVGDVCREYNLWLHIDAAYAGSAFICPEFRTWLKGIEKADSI 341
Query: 387 ------------------FYKMKLQTNFPNFILSYFPKF--QSVRLAQKFEALVLGDPRF 426
F +KL +F + K + VRLAQKFEALV D R+
Sbjct: 342 AFNPSKWLMHWQIPLSKRFRALKLWFVLRSFGIKGLQKHIREGVRLAQKFEALVRADSRY 401
Query: 427 EIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPS 484
EIPAARHLGMVV R+ G N LTEKLLKRLN +G +H VPASL+ Q + R FT+ +
Sbjct: 402 EIPAARHLGMVVFRIKGMNELTEKLLKRLNHRGNMHAVPASLKGQYVIR---FTVTST 456
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|449471135|ref|XP_002197033.2| PREDICTED: histidine decarboxylase [Taeniopygia guttata] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 253/572 (44%), Positives = 332/572 (58%), Gaps = 106/572 (18%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYI YL N+R+RRV PDV+PGY+R+ +P+SAP++P+ WD I GDIEK+IMPG+
Sbjct: 10 GKEMVDYICQYLSNVRERRVTPDVQPGYMRAQLPDSAPMDPDSWDNIFGDIEKIIMPGVV 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAYFPAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 70 HWQSPHMHAYFPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
++FLH DS GGGVLQ+T SESTL+ LLA R I + Q S P+ + + +NSRLVAY S
Sbjct: 130 DKFLHHHPDSVGGGVLQSTVSESTLVALLAARKNKILEMQVSEPDTDESSLNSRLVAYAS 189
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV ++++ D+ SLRG+ L +AI D+KK L+P F+ + L
Sbjct: 190 DQAHSSVEKAGLISLVKIKFLPVDENFSLRGETLKKAIAEDRKKGLVPVFVCATLGTTGV 249
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427
D+ LG +GL + + F+ F F + + D F
Sbjct: 250 CAFDNLSELGPVCDAEGLWLH-IDAAYAGTAFVCPEFRLF--------LDGIEYAD-SFT 299
Query: 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLL 487
++ + MV G + K +LH Q F++ P L
Sbjct: 300 FNPSKWM-MVHFDCTGFWV---------KDKYKLH--------------QTFSVNP-VYL 334
Query: 488 RVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQK 547
R NSGA AID+MHWQIPLS+RFR+LKLWFV+R+FG+K LQ
Sbjct: 335 RHANSGA-------------------AIDFMHWQIPLSRRFRSLKLWFVLRSFGVKKLQA 375
Query: 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 607
H+R Q A
Sbjct: 376 HVR---------------------------------------------------QGTETA 384
Query: 608 QKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL 667
+ FE+LV DP FEIPA RHLG+VV RL G N LTEKLLK L+S GRL +PA++ + +
Sbjct: 385 KFFESLVKSDPLFEIPAKRHLGLVVFRLKGPNWLTEKLLKELSSSGRLFLIPATIHDKFI 444
Query: 668 GRAQNFTR-TTNDDITRDWNEIRNTATEILAE 698
R ++ TT +DI +DW+ I++TA +I+++
Sbjct: 445 IRFTVTSQFTTREDILQDWSIIQHTAAQIISQ 476
|
Source: Taeniopygia guttata Species: Taeniopygia guttata Genus: Taeniopygia Family: Estrildidae Order: Passeriformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|326926647|ref|XP_003209510.1| PREDICTED: histidine decarboxylase-like [Meleagris gallopavo] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 254/589 (43%), Positives = 336/589 (57%), Gaps = 107/589 (18%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYI YL N+R+RRV PDV+PGY+R+ +P+SAP++P+ WD I GDIEK+IMPG+
Sbjct: 10 GKEMVDYICQYLSNVRERRVTPDVQPGYMRAQLPDSAPMDPDSWDNIFGDIEKIIMPGVV 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAYFPAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 70 HWQSPHMHAYFPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
++FLH DS GGGVLQ+T SESTL+ LLA R I + + S P+ + + +NSRL+AY S
Sbjct: 130 DKFLHHHPDSVGGGVLQSTVSESTLVALLAARKNKILEMKLSEPDADESSLNSRLIAYAS 189
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV M+++ D+ SLRG+ L +AI D+KK L+P F+ + L
Sbjct: 190 DQAHSSVEKAGLISLVKMKFLPVDENFSLRGETLKKAIAEDRKKGLVPIFVCATLGTTGV 249
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427
DS LG +GL + + F+ F F + + D F
Sbjct: 250 CAFDSLSELGPICGAEGLWLH-IDAAYAGTAFLCPEFRLF--------LDGIEYAD-SFT 299
Query: 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLL 487
++ + MV G + K +LH Q F++ P L
Sbjct: 300 FNPSKWM-MVHFDCTGFWV---------KDKYKLH--------------QTFSVNP-VYL 334
Query: 488 RVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQK 547
R NSGA A+D+MHWQIPLS+RFR+LKLWFVIR+FG+K LQ
Sbjct: 335 RHPNSGA-------------------AVDFMHWQIPLSRRFRSLKLWFVIRSFGVKKLQA 375
Query: 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 607
H+R A
Sbjct: 376 HVR---------------------------------------------------HGTETA 384
Query: 608 QKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL 667
+ FE+LV DP FEIPA RHLG+VV RL G N LTEKLL+ L+S GRL +PA++ + +
Sbjct: 385 KFFESLVRSDPLFEIPAKRHLGLVVFRLKGPNCLTEKLLRELSSSGRLFLIPATIHDKFI 444
Query: 668 GRAQNFTR-TTNDDITRDWNEIRNTATEILAELAEETQRVQVTKRTRVP 715
R ++ TT +DI +DWN I++TA +I+++ E + ++P
Sbjct: 445 IRFTVTSQFTTREDILQDWNIIQHTAAQIISQ-HNELHHISSGDEAKIP 492
|
Source: Meleagris gallopavo Species: Meleagris gallopavo Genus: Meleagris Family: Phasianidae Order: Galliformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|351715490|gb|EHB18409.1| Histidine decarboxylase [Heterocephalus glaber] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 255/573 (44%), Positives = 327/573 (57%), Gaps = 108/573 (18%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
G+EMVDYI YL +RDRRV PDV+PGYLR+L+PESAP EP+ WD+I GDIE++IMPG+
Sbjct: 10 GREMVDYICQYLTTVRDRRVTPDVQPGYLRALLPESAPEEPDSWDSIFGDIERIIMPGVV 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP MHAY+PAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 70 HWQSPRMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMSMMDWLAKMLGLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
FLH S GGGVLQ+T SESTL+ LLA R I QQ PE + + +N+RLVAY S
Sbjct: 130 HHFLHGHPGSQGGGVLQSTVSESTLVALLAARKNKILAMQQLEPEADESSLNARLVAYAS 189
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV M+++ DD SLRGD L AIE D+++ L+P F+ + L
Sbjct: 190 DQAHSSVEKAGLISLVKMKFLPVDDNFSLRGDVLQRAIEEDRQRGLVPVFVCATLGTTGV 249
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKF-QSVRLAQKFEALVLGDPRF 426
D LG + +GL + + F+ F F + V A F +P
Sbjct: 250 CAFDCLSELGPICVREGLWLH-IDAAYAGTAFLCPEFRGFLKGVEFADSFTF----NP-- 302
Query: 427 EIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSL 486
++ ++ + G V +++Q Q F++ P
Sbjct: 303 ---------------------SKWMMVHFDCTG--FWVKDKMKLQ-----QTFSVNP-VY 333
Query: 487 LRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQ 546
LR NSG+ A D+MHWQIPLS+RFR++KLWFVIR+FG+K LQ
Sbjct: 334 LRHANSGS-------------------ATDFMHWQIPLSRRFRSIKLWFVIRSFGVKNLQ 374
Query: 547 KHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRL 606
HIR GT M
Sbjct: 375 AHIRH-------------------GTEM-------------------------------- 383
Query: 607 AQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQG 666
A+ FE+LV DP FEIPA RHLG+VV RL G N LTE +LK + GRL +PA+++ +
Sbjct: 384 AKVFESLVRNDPFFEIPAKRHLGLVVFRLKGPNCLTESMLKEIAKDGRLFLIPATIQNKL 443
Query: 667 LGRAQNFTR-TTNDDITRDWNEIRNTATEILAE 698
+ R ++ TT DDI RDWN IR+ AT +L++
Sbjct: 444 IIRFTVTSQFTTKDDILRDWNLIRDAATLVLSQ 476
|
Source: Heterocephalus glaber Species: Heterocephalus glaber Genus: Heterocephalus Family: Bathyergidae Order: Rodentia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|126278245|ref|XP_001380521.1| PREDICTED: histidine decarboxylase [Monodelphis domestica] | Back alignment and taxonomy information |
|---|
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 256/573 (44%), Positives = 328/573 (57%), Gaps = 108/573 (18%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYI YL +R+RRV PDV+PGY+RS +P+SAPVEP+ WDTI GDIEK+IMPG+
Sbjct: 10 GKEMVDYIFQYLSTVRERRVTPDVQPGYMRSQLPDSAPVEPDSWDTIFGDIEKIIMPGVV 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAYFPAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 70 HWQSPHMHAYFPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FLH S GGGVLQ+T SESTL+ LLA R I + S P+++ + +NSRL+AY S
Sbjct: 130 EHFLHHHPGSQGGGVLQSTVSESTLVALLAARKNKILNMKVSEPDVDESSLNSRLIAYAS 189
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV M+++ D SLRG+ L +AIE DKK+ L+P F+ + L
Sbjct: 190 DQAHSSVEKAGLISLVKMKFLPVDKNFSLRGETLQKAIEEDKKQGLVPVFVCATLGTTGV 249
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKF-QSVRLAQKFEALVLGDPRF 426
D LG +GL + + F+ F +F + + A F +P
Sbjct: 250 CAFDCLAELGPICASEGLWLH-VDAAYAGTAFLCPEFREFLKGIEYADSFTF----NP-- 302
Query: 427 EIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSL 486
++ ++ + G V ++Q Q F++ P
Sbjct: 303 ---------------------SKWMMVHFDCTG--FWVKDKFKLQ-----QTFSVNP-VY 333
Query: 487 LRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQ 546
LR NSGA A D+MHWQIPLS+RFR++KLWFVIR+FG+K LQ
Sbjct: 334 LRHANSGA-------------------ATDFMHWQIPLSRRFRSIKLWFVIRSFGVKNLQ 374
Query: 547 KHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRL 606
H+R GT M
Sbjct: 375 AHVRH-------------------GTEM-------------------------------- 383
Query: 607 AQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQG 666
A+ FE+LV DP FEIPA RHLG+VV RL G N LTEK+LK L G L +PA ++ +
Sbjct: 384 AKYFESLVRNDPLFEIPAKRHLGLVVFRLKGPNCLTEKVLKELVKSGYLFLIPAIIQDKF 443
Query: 667 LGRAQNFTR-TTNDDITRDWNEIRNTATEILAE 698
+ R ++ TT +DI RDWN IR+ AT IL++
Sbjct: 444 IIRFTVTSQFTTKEDILRDWNLIRDAATHILSQ 476
|
Source: Monodelphis domestica Species: Monodelphis domestica Genus: Monodelphis Family: Didelphidae Order: Didelphimorphia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|291403024|ref|XP_002717851.1| PREDICTED: histidine decarboxylase [Oryctolagus cuniculus] | Back alignment and taxonomy information |
|---|
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 262/613 (42%), Positives = 340/613 (55%), Gaps = 113/613 (18%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
G+EMVDYI YL +R+RRV PDV+PGYLR+ +PESAP EP+ WD+I GDIE++IMPG+
Sbjct: 11 GREMVDYICQYLSTVRERRVTPDVRPGYLRAQLPESAPEEPDSWDSIFGDIERIIMPGVV 70
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAY+PAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 71 HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLP 130
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
+ FLH S GGGVLQ+T SESTLI LLA R I + Q S P+ + + +N+RLVAY S
Sbjct: 131 DHFLHHHPGSKGGGVLQSTVSESTLIALLAARKNKILEMQASEPDADESSLNARLVAYAS 190
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV M+++ DD SLRG+ L AIE DK++ L+P F+ + L
Sbjct: 191 DQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQRAIEEDKRRGLVPVFVCATLGTTGV 250
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKF-QSVRLAQKFEALVLGDPRF 426
D LG +GL + + F+ F F + V LA F +P
Sbjct: 251 CAFDCLSELGPICASEGLWLH-IDAAYAGTAFLCPEFRGFLKGVELADSFTF----NP-- 303
Query: 427 EIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSL 486
++ ++ + G V ++Q Q F++ P
Sbjct: 304 ---------------------SKWMMVHFDCTG--FWVKDKYKLQ-----QTFSVNP-VY 334
Query: 487 LRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQ 546
LR NSGA A D+MHWQIPLS+RFR++KLWFVIR+FG+K LQ
Sbjct: 335 LRHANSGA-------------------ATDFMHWQIPLSRRFRSIKLWFVIRSFGVKNLQ 375
Query: 547 KHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRL 606
H+R GT M
Sbjct: 376 AHVRH-------------------GTEM-------------------------------- 384
Query: 607 AQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQG 666
A+ FE+LV DP FEIPA RHLG+VV RL G N LTE LLK + G+L +PA++ +
Sbjct: 385 AKYFESLVRNDPLFEIPAKRHLGLVVFRLKGPNCLTESLLKEIARAGQLFLIPATILDKL 444
Query: 667 LGRAQNFTR-TTNDDITRDWNEIRNTATEILAELAEETQRVQVTKRTRVPLKETKGRNAL 725
+ R ++ TT +DI RDW+ IR+ AT IL++ QV R +P G
Sbjct: 445 IIRFTVTSQFTTREDILRDWHLIRDAATLILSQHCTSQPSPQV--RNLMPRSREPG---A 499
Query: 726 FGSSLLLANSPMS 738
GS + L +P +
Sbjct: 500 LGSGMPLPPAPAA 512
|
Source: Oryctolagus cuniculus Species: Oryctolagus cuniculus Genus: Oryctolagus Family: Leporidae Order: Lagomorpha Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|449268041|gb|EMC78914.1| Histidine decarboxylase, partial [Columba livia] | Back alignment and taxonomy information |
|---|
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 249/568 (43%), Positives = 329/568 (57%), Gaps = 106/568 (18%)
Query: 132 VDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQS 191
VDYI YL N+R+RRV PDV+PGY+R+ +P+SAP++P+ WD I GDIEK+IMPG+ HWQS
Sbjct: 1 VDYICQYLSNVRERRVTPDVQPGYMRAQLPDSAPMDPDSWDNIFGDIEKIIMPGVVHWQS 60
Query: 192 PYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFL 251
P+MHAYFPAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+W+ KM+GLP++FL
Sbjct: 61 PHMHAYFPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWMAKMLGLPDKFL 120
Query: 252 HTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311
H DS GGGVLQ+T SESTL+ LLA R I + + S P+ + + +NSRLVAY SDQAH
Sbjct: 121 HHHPDSVGGGVLQSTVSESTLVALLAARKNKILEMKISEPDTDESSLNSRLVAYASDQAH 180
Query: 312 SSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD 371
SSVEKAGLI LV M+++ D+ SLRG+ L +AI D+KK L+P F+ + L D
Sbjct: 181 SSVEKAGLIALVKMKFLPVDENFSLRGETLKKAIAEDRKKGLVPVFVCATLGTTGVCAFD 240
Query: 372 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA 431
+ LG +GL + + F+ F F + + D F +
Sbjct: 241 NLSELGPICDAEGLWLH-IDAAYAGTAFVCPEFRLF--------LDGIEYAD-SFTFNPS 290
Query: 432 RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKN 491
+ + MV G + K +LH Q F++ P LR N
Sbjct: 291 KWM-MVHFDCTGFWV---------KDKYKLH--------------QTFSVNP-VYLRHPN 325
Query: 492 SGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIRE 551
SGA A+D+MHWQIPLS+RFR+LKLWFVIR+FG+K LQ H+R
Sbjct: 326 SGA-------------------AVDFMHWQIPLSRRFRSLKLWFVIRSFGVKKLQAHVRH 366
Query: 552 IFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 611
GT A+ FE
Sbjct: 367 -------------------GT--------------------------------ETAKFFE 375
Query: 612 ALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQ 671
+LV DP FEIPA RHLG+VV RL G N LTEKLLK L+S G+L +PA++ + + R
Sbjct: 376 SLVRSDPLFEIPAKRHLGLVVFRLKGPNWLTEKLLKELSSSGKLFLIPATIHDKFIIRFT 435
Query: 672 NFTR-TTNDDITRDWNEIRNTATEILAE 698
++ TT +DI +DWN I++TA +I+++
Sbjct: 436 VTSQFTTREDILQDWNIIQHTAAQIVSQ 463
|
Source: Columba livia Species: Columba livia Genus: Columba Family: Columbidae Order: Columbiformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|269785281|ref|NP_001161568.1| histidine decarboxylase [Saccoglossus kowalevskii] gi|268054129|gb|ACY92551.1| histidine decarboxylase [Saccoglossus kowalevskii] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 256/578 (44%), Positives = 321/578 (55%), Gaps = 109/578 (18%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYIADYL+ IR R V+PDV+PGY++ L+P+ AP++ E W+ I DIE+VIMPGIT
Sbjct: 10 GKEMVDYIADYLQTIRLRNVFPDVQPGYMQDLIPQEAPIDGENWEDIFKDIERVIMPGIT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAYFPALNS PSLLGDML+DAI CLGFTWASSPACTELE+I M+WL K IGLP
Sbjct: 70 HWQSPHMHAYFPALNSCPSLLGDMLADAIGCLGFTWASSPACTELEVIVMDWLAKAIGLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQ--SHP-ELEHAEINSRLVA 304
FLH S GGGVLQ TASE+TLI +LA RT+AI + ++ +P E + + SRLV
Sbjct: 130 ACFLHNSPGSRGGGVLQGTASEATLIAMLAARTDAIARIKEDCGNPQEFDEGAVISRLVV 189
Query: 305 YCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLAL 364
YCSDQAHSSVEKA LI +V + I SD LSLRGD L +AI+ DK+K L+PF++ + L
Sbjct: 190 YCSDQAHSSVEKACLIAMVKIHTIPSDANLSLRGDALQKAIDEDKQKGLVPFYLCATLGT 249
Query: 365 PAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDP 424
D LG P + ++ +A G
Sbjct: 250 TGACAFDDMAELG---------------------------PICEKEKIWMHIDAAYAGTA 282
Query: 425 RFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPS 484
F P R LK + G P+ + + +
Sbjct: 283 -FLCPEYR-----------------GYLKGVEYAGSFAFNPSKWLMVHFDCTAMWVKNSA 324
Query: 485 SLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKG 544
SL R N L+ L+H+ +GLAIDYMHWQIPLS+RFRALKLWFVIR+FGIKG
Sbjct: 325 SLHRTFNVNPLY---------LKHDKTGLAIDYMHWQIPLSRRFRALKLWFVIRSFGIKG 375
Query: 545 LQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSV 604
LQ H+R + +
Sbjct: 376 LQSHVR---------------------------------------------------KGI 384
Query: 605 RLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRI 664
RLA+ FE LV +P FE+ A R LG+VV RL G N L E LL LN G+++ VPASL+
Sbjct: 385 RLAKLFEGLVRREPGFEVAAERILGLVVFRLNGPNELNEHLLSALNHTGKIYVVPASLKG 444
Query: 665 QGLGRAQNFTR-TTNDDITRDWNEIRNTATEILAELAE 701
+ + R +R TT DDI DWN IR A ++ + AE
Sbjct: 445 KYVIRFTVTSRSTTEDDIRLDWNLIRQKARDVRVKFAE 482
|
Source: Saccoglossus kowalevskii Species: Saccoglossus kowalevskii Genus: Saccoglossus Family: Harrimaniidae Order: Class: Enteropneusta Phylum: Hemichordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 943 | ||||||
| FB|FBgn0005619 | 847 | Hdc "Histidine decarboxylase" | 0.249 | 0.277 | 0.740 | 7e-180 | |
| UNIPROTKB|F1NXM1 | 483 | HDC "Uncharacterized protein" | 0.273 | 0.534 | 0.608 | 6.4e-130 | |
| UNIPROTKB|E2RMU1 | 663 | HDC "Uncharacterized protein" | 0.273 | 0.389 | 0.604 | 6.4e-128 | |
| UNIPROTKB|P19113 | 662 | HDC "Histidine decarboxylase" | 0.273 | 0.389 | 0.604 | 3.5e-127 | |
| UNIPROTKB|Q5EA83 | 658 | HDC "Histidine decarboxylase" | 0.273 | 0.392 | 0.604 | 1.9e-126 | |
| UNIPROTKB|F1SQH5 | 662 | HDC "Uncharacterized protein" | 0.273 | 0.389 | 0.593 | 1.2e-124 | |
| RGD|2790 | 656 | Hdc "histidine decarboxylase" | 0.273 | 0.393 | 0.593 | 3.1e-124 | |
| MGI|MGI:96062 | 662 | Hdc "histidine decarboxylase" | 0.273 | 0.389 | 0.600 | 2.2e-123 | |
| ZFIN|ZDB-GENE-080102-5 | 608 | hdc "histidine decarboxylase" | 0.276 | 0.429 | 0.570 | 5.1e-118 | |
| UNIPROTKB|B7ZM01 | 629 | HDC "HDC protein" [Homo sapien | 0.273 | 0.410 | 0.604 | 9.3e-113 |
| FB|FBgn0005619 Hdc "Histidine decarboxylase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 7.0e-180, Sum P(3) = 7.0e-180
Identities = 174/235 (74%), Positives = 202/235 (85%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYIADYLENIR+RRV+PDV PGY+R L+PESAP+E E W I D+E+++MPGIT
Sbjct: 10 GKEMVDYIADYLENIRERRVFPDVSPGYMRQLLPESAPIEGEPWPKIFSDVERIVMPGIT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAYFPALNS PSLLGDML+DAINCLGFTWASSPACTELEII MNWLGKMIGLP
Sbjct: 70 HWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTWASSPACTELEIIVMNWLGKMIGLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
+ FLH S GGGVLQTTASE+TL+CLLAGRT AI+++ + HP + AEIN+RLVAYCS
Sbjct: 130 DAFLHLSSQSQGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINARLVAYCS 189
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGL 362
DQAHSSVEKA LIGLV MRYIE+DD L++RG L EAIE D K+ L+PF++ + L
Sbjct: 190 DQAHSSVEKAALIGLVRMRYIEADDDLAMRGKLLREAIEDDIKQGLVPFWVCATL 244
|
|
| UNIPROTKB|F1NXM1 HDC "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 6.4e-130, Sum P(3) = 6.4e-130
Identities = 157/258 (60%), Positives = 197/258 (76%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYI YL N+R+RRV PDV+PGY+R+ +P+SAP++P+ WD I GDIEK+IMPG+
Sbjct: 16 GKEMVDYICQYLSNVRERRVTPDVQPGYMRAQLPDSAPMDPDSWDNIFGDIEKIIMPGVV 75
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAYFPAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 76 HWQSPHMHAYFPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLP 135
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
++FLH DS GGGVLQ+T SESTL+ LLA R I + + S P+ + + +NSRL+AY S
Sbjct: 136 DKFLHHHPDSVGGGVLQSTVSESTLVALLAARKNKILEMKLSEPDADESSLNSRLIAYAS 195
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV M+++ D+ SLRG+ L +AI D+KK L+P F+ + L
Sbjct: 196 DQAHSSVEKAGLISLVKMKFLPVDENFSLRGETLKKAIAEDRKKGLVPIFVCATLGTTGV 255
Query: 368 LVVDSYCCLGTAMIVKGL 385
DS LG +GL
Sbjct: 256 CAFDSLSELGPICGAEGL 273
|
|
| UNIPROTKB|E2RMU1 HDC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 6.4e-128, Sum P(3) = 6.4e-128
Identities = 156/258 (60%), Positives = 193/258 (74%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYI YL +R+RRV PDV+PGYLR+ +PESAP EP+ WD I GDIE++IMPG+
Sbjct: 11 GKEMVDYICQYLSTVRERRVTPDVRPGYLRAQLPESAPEEPDSWDNIFGDIERIIMPGVV 70
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAY+PAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 71 HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLP 130
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FLH S GGGVLQ+T SESTLI LLA R + I + + S P + + +N+RL+AY S
Sbjct: 131 EHFLHHHPGSQGGGVLQSTVSESTLIALLAARKDKILELKASEPGADESSLNARLIAYAS 190
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV M+++ DD SLRG+ L +AI+ DK++ L+P F+ + L
Sbjct: 191 DQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIKEDKEQGLVPVFVCATLGTTGV 250
Query: 368 LVVDSYCCLGTAMIVKGL 385
D LG +GL
Sbjct: 251 CAFDCLSELGPICASEGL 268
|
|
| UNIPROTKB|P19113 HDC "Histidine decarboxylase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 833 (298.3 bits), Expect = 3.5e-127, Sum P(3) = 3.5e-127
Identities = 156/258 (60%), Positives = 194/258 (75%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
G+EMVDYI YL +R+RRV PDV+PGYLR+ +PESAP +P+ WD+I GDIE++IMPG+
Sbjct: 11 GREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVV 70
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAY+PAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 71 HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLP 130
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FLH S GGGVLQ+T SESTLI LLA R I + + S P+ + + +N+RLVAY S
Sbjct: 131 EHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESCLNARLVAYAS 190
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV M+++ DD SLRG+ L +AIE DK++ L+P F+ + L
Sbjct: 191 DQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGV 250
Query: 368 LVVDSYCCLGTAMIVKGL 385
D LG +GL
Sbjct: 251 CAFDCLSELGPICAREGL 268
|
|
| UNIPROTKB|Q5EA83 HDC "Histidine decarboxylase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 1.9e-126, Sum P(3) = 1.9e-126
Identities = 156/258 (60%), Positives = 195/258 (75%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYI YL +R+RRV PDV+PGYLR+ +PESAP+EP+ WD+I GDIE++IMPG+
Sbjct: 11 GKEMVDYICQYLTTVRERRVTPDVRPGYLRAQLPESAPMEPDSWDSIFGDIERIIMPGVV 70
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAY+PAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 71 HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLP 130
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FLH S GGGVLQ+T SESTLI LLA R I + + S PE + + +N+RLVAY S
Sbjct: 131 EHFLHHHPGSQGGGVLQSTVSESTLIALLAARKNKILEMKASEPEADESFLNARLVAYAS 190
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV M+++ D+ SLRG+ L +AI+ D+++ L+P F+ + L
Sbjct: 191 DQAHSSVEKAGLISLVKMKFLPVDENFSLRGEALQKAIKEDRERGLVPIFVCATLGTTGV 250
Query: 368 LVVDSYCCLGTAMIVKGL 385
D LG +GL
Sbjct: 251 CAFDCLSELGPICAREGL 268
|
|
| UNIPROTKB|F1SQH5 HDC "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 820 (293.7 bits), Expect = 1.2e-124, Sum P(3) = 1.2e-124
Identities = 153/258 (59%), Positives = 190/258 (73%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYI YL +R+RRV PDV+PGYLR +PE AP EP+ WD+I GDIE++IMPG+
Sbjct: 11 GKEMVDYICQYLSTVRERRVTPDVRPGYLRGQLPERAPEEPDSWDSIFGDIERIIMPGVV 70
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAY+PAL S+PSLLGDML+DAINCLGFTWASSP CTELE+ M+WL KM+GLP
Sbjct: 71 HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPVCTELEMNVMDWLAKMLGLP 130
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
+ FLH S GGGVLQ+T SESTLI LLA R I + + S P + + +N+RL+AY S
Sbjct: 131 DHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKASEPGADESCLNARLIAYAS 190
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV M+++ DD SLRG+ L +AIE D+++ L+P F+ + L
Sbjct: 191 DQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDRERGLVPVFVCATLGTTGV 250
Query: 368 LVVDSYCCLGTAMIVKGL 385
D LG +GL
Sbjct: 251 CAFDCLSELGPICASEGL 268
|
|
| RGD|2790 Hdc "histidine decarboxylase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 814 (291.6 bits), Expect = 3.1e-124, Sum P(3) = 3.1e-124
Identities = 153/258 (59%), Positives = 190/258 (73%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYI YL +R+R+V P+VKPGYLR+ +P SAP EP+ WD+I GDIE++IMPG+
Sbjct: 14 GKEMVDYICQYLSTVRERQVTPNVKPGYLRAQIPSSAPEEPDSWDSIFGDIEQIIMPGVV 73
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAY+PAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 74 HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNIMDWLAKMLGLP 133
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
+ FLH S GGGVLQ T SESTLI LLA R I + + P + + +N+RLVAY S
Sbjct: 134 DFFLHHHPSSQGGGVLQRTVSESTLIALLAARKNKILEMKAHEPNADESSLNARLVAYAS 193
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV ++++ DD SLRG+ L +AIE DK++ L+P F+ + L
Sbjct: 194 DQAHSSVEKAGLISLVKIKFLPVDDNFSLRGEALQKAIEEDKQQGLVPVFVCATLGTTGV 253
Query: 368 LVVDSYCCLGTAMIVKGL 385
D LG +GL
Sbjct: 254 CAFDKLSELGPICAREGL 271
|
|
| MGI|MGI:96062 Hdc "histidine decarboxylase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 815 (292.0 bits), Expect = 2.2e-123, Sum P(3) = 2.2e-123
Identities = 155/258 (60%), Positives = 191/258 (74%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDYI+ YL +R+R+V P+V+PGYLR+ +P SAP EP+ WD+I GDIE+VIMPG+
Sbjct: 18 GKEMVDYISQYLSTVRERQVTPNVQPGYLRAQLPASAPEEPDSWDSIFGDIERVIMPGVV 77
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAY+PAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 78 HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNIMDWLAKMLGLP 137
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FLH S GGGVLQ+T SESTLI LLA R I + P+ + +N+RLVAY S
Sbjct: 138 EYFLHHHPSSRGGGVLQSTVSESTLIALLAARKNKILAMKACEPDANESSLNARLVAYTS 197
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV +R++ DD SLRG+ L +AIE DK++ L+P F+ + L
Sbjct: 198 DQAHSSVEKAGLISLVKIRFLPVDDNFSLRGEALQKAIEEDKQQGLVPVFVCATLGTTGV 257
Query: 368 LVVDSYCCLGTAMIVKGL 385
D LG +GL
Sbjct: 258 CAFDRLSELGPICASEGL 275
|
|
| ZFIN|ZDB-GENE-080102-5 hdc "histidine decarboxylase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 5.1e-118, Sum P(3) = 5.1e-118
Identities = 150/263 (57%), Positives = 192/263 (73%)
Query: 125 ILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMP 184
+L GKEMV+YI YL IR+RRV PDV+PG++R L+P SAP EPE W TIM D+E +IMP
Sbjct: 7 MLRGKEMVEYIHQYLTGIRERRVVPDVQPGFMRPLLPSSAPYEPEDWSTIMQDVENIIMP 66
Query: 185 GITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMI 244
G+ HWQSP+MHAYFPALNS+PSLLGDML+DAINCLGFTWASSPACTELE+ ++WL K +
Sbjct: 67 GVVHWQSPHMHAYFPALNSWPSLLGDMLADAINCLGFTWASSPACTELEMCVLDWLCKAL 126
Query: 245 GLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI--RKYQQSHPELEHAEINSRL 302
GLP+ +LH S GGG+LQ+T SE TL+ LLA R + I K + +H + + + +NSRL
Sbjct: 127 GLPDHYLHHHPQSTGGGILQSTVSECTLVALLAARKDRILQMKSEATHTDTDESVLNSRL 186
Query: 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGL 362
VAY SDQAHSSVEKAGLI LV +R++++D SLRG+ L A+E D++ LIP + + L
Sbjct: 187 VAYASDQAHSSVEKAGLISLVKIRFLQTDAVFSLRGETLQRAVEEDRRSGLIPVMVCATL 246
Query: 363 ALPAFLVVDSYCCLGTAMIVKGL 385
D LG + +GL
Sbjct: 247 GSTGVCSFDRLDELGPVCVREGL 269
|
|
| UNIPROTKB|B7ZM01 HDC "HDC protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 833 (298.3 bits), Expect = 9.3e-113, Sum P(3) = 9.3e-113
Identities = 156/258 (60%), Positives = 194/258 (75%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
G+EMVDYI YL +R+RRV PDV+PGYLR+ +PESAP +P+ WD+I GDIE++IMPG+
Sbjct: 11 GREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVV 70
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAY+PAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 71 HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLP 130
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FLH S GGGVLQ+T SESTLI LLA R I + + S P+ + + +N+RLVAY S
Sbjct: 131 EHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESCLNARLVAYAS 190
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV M+++ DD SLRG+ L +AIE DK++ L+P F+ + L
Sbjct: 191 DQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGV 250
Query: 368 LVVDSYCCLGTAMIVKGL 385
D LG +GL
Sbjct: 251 CAFDCLSELGPICAREGL 268
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 943 | |||
| pfam00282 | 373 | pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca | 2e-93 | |
| PLN02880 | 490 | PLN02880, PLN02880, tyrosine decarboxylase | 2e-65 | |
| PLN02590 | 539 | PLN02590, PLN02590, probable tyrosine decarboxylas | 2e-55 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 4e-49 | |
| pfam00282 | 373 | pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca | 1e-28 | |
| PLN02880 | 490 | PLN02880, PLN02880, tyrosine decarboxylase | 3e-17 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 5e-17 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 8e-12 | |
| PLN02590 | 539 | PLN02590, PLN02590, probable tyrosine decarboxylas | 6e-09 | |
| pfam00282 | 373 | pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca | 2e-04 | |
| PLN02880 | 490 | PLN02880, PLN02880, tyrosine decarboxylase | 0.001 |
| >gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain | Back alignment and domain information |
|---|
Score = 300 bits (770), Expect = 2e-93
Identities = 122/206 (59%), Positives = 147/206 (71%), Gaps = 8/206 (3%)
Query: 153 PGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDML 212
PGYLR L+PE+AP+ PE I+GDI K IMPG+T W SP HAYFPA NSYPSLLGDML
Sbjct: 1 PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60
Query: 213 SDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTL 272
SDAINC GFTW SSPACTELE + M+WL KM+GLP+EFL + GGGVLQ +SES L
Sbjct: 61 SDAINCNGFTWESSPACTELENVVMDWLAKMLGLPKEFLGS---GEGGGVLQGGSSESNL 117
Query: 273 ICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD 332
+ LLA RT+ IR+ + + +LVAY SDQAHSS+EKA LI V +R I +D+
Sbjct: 118 LALLAARTKWIRRMKAAGKPS-----LGKLVAYTSDQAHSSIEKAALIAGVELREIPTDE 172
Query: 333 KLSLRGDKLIEAIERDKKKHLIPFFI 358
+RG L +AIE DK+ LIPFF+
Sbjct: 173 NGKMRGMDLEKAIEEDKENGLIPFFV 198
|
Length = 373 |
| >gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 2e-65
Identities = 112/266 (42%), Positives = 162/266 (60%), Gaps = 16/266 (6%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
G MVD+IADY ++I + V V+PGYLR L+P+SAP +PE D ++ D++ I+PG+T
Sbjct: 19 GHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQAKILPGVT 78
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP AY+P+ +S LG+MLS +N +GF+W +SPA TELE+I ++WL K++ LP
Sbjct: 79 HWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLP 138
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E+FL T GGGV+Q TASE+ L+ LLA R +RK ++ E +LV Y S
Sbjct: 139 EQFLST---GNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALE--------KLVVYAS 187
Query: 308 DQAHSSVEKAGLIGLV---NMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGL 362
DQ HS+++KA I + N R +++D +L + L EAI D LIPFF+ + +
Sbjct: 188 DQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATV 247
Query: 363 ALPAFLVVDSYCCLGTAMIVKGLGFY 388
+ VD LG G+ F+
Sbjct: 248 GTTSSTAVDPLLELGKIAKSNGMWFH 273
|
Length = 490 |
| >gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 2e-55
Identities = 111/270 (41%), Positives = 157/270 (58%), Gaps = 22/270 (8%)
Query: 128 GKEMVDYIADYLENIRDRR----VYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIM 183
G MVD+IADY +N++D V V+PGYLR ++P+SAP PE ++ D+ K IM
Sbjct: 63 GHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIM 122
Query: 184 PGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKM 243
PGITHWQSP AY+ + S LG+ML+ ++ +GFTW +SPA TELEII ++WL K+
Sbjct: 123 PGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKL 182
Query: 244 IGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303
+ LP+ FL T GGGV+Q T E+ L+ +LA R ++K ++ + +LV
Sbjct: 183 LQLPDHFLST---GNGGGVIQGTGCEAVLVVVLAARDRILKKVGKT--------LLPQLV 231
Query: 304 AYCSDQAHSSVEKAGLIGLV---NMRYIESDDKLS--LRGDKLIEAIERDKKKHLIPFFI 358
Y SDQ HSS KA LIG + N+R +++D + + + L EAI D K IPFFI
Sbjct: 232 VYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFI 291
Query: 359 FSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388
+ + + VD LG I K G +
Sbjct: 292 CATVGTTSSAAVDPLVPLGN--IAKKYGIW 319
|
Length = 539 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 4e-49
Identities = 91/335 (27%), Positives = 132/335 (39%), Gaps = 78/335 (23%)
Query: 194 MHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHT 253
A F P+LL +ML+ A N + FTW SPA TE+E +NWL K+ GLP
Sbjct: 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLP------ 54
Query: 254 KVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313
GV + SES L+ LLA R A ++ + +LV CSDQAH S
Sbjct: 55 --SEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGR-----GIDKLVIVCSDQAHVS 107
Query: 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDK------------------------ 349
VEKA V +R + D+ + + L AI+ DK
Sbjct: 108 VEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPL 167
Query: 350 -------KKHLIPFFI---FSGLALP----AFLV-----VDS---------YCCLG-TAM 380
+K+ + + + G LP L VDS LG +A+
Sbjct: 168 EEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAV 227
Query: 381 IVKGLGFY---KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMV 437
+V+ L + + + + I + V LA+ L+ DP FE+ +L +V
Sbjct: 228 LVRALKLWATLRRFGRDGYGEHID------RIVDLAKYLAELIRADPGFELLGEPNLSLV 281
Query: 438 VIRLLGE---NILTEKLLKRLNSKGRLHCVPASLR 469
RL + L L RLN +G H +L
Sbjct: 282 CFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLG 316
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-28
Identities = 61/175 (34%), Positives = 78/175 (44%), Gaps = 62/175 (35%)
Query: 472 GLGRAQNFTIVPS---------SLLRVKNSGALHRTFNVEPLYLRHEN--SGLAIDYMHW 520
G+ RA +F+ P S L V++ GAL + P YL H + S +A+DY W
Sbjct: 249 GIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEYLGHNDKQSDVAVDYGDW 308
Query: 521 QIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLG 580
QIPLS+RFR LKLWFV+R++G++GLQ IR
Sbjct: 309 QIPLSRRFRILKLWFVLRSYGVEGLQNQIRR----------------------------- 339
Query: 581 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRL 635
V LA+ FEALV D RFEI A R LG+V RL
Sbjct: 340 ----------------------HVELAKYFEALVRKDSRFEICAERGLGLVCFRL 372
|
Length = 373 |
| >gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 3e-17
Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 61/225 (27%)
Query: 485 SLLRVKNSGALHRTFNVEPLYLRHENS--GLAIDYMHWQIPLSKRFRALKLWFVIRNFGI 542
SLL VK+ AL ++ + P +L+++ S +DY WQIPL +RFR+LKLW V+R +G+
Sbjct: 316 SLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGV 375
Query: 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQ 602
+ LQ +IR
Sbjct: 376 ENLQSYIR---------------------------------------------------N 384
Query: 603 SVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLL-------GENILTEKLLKRLNSKGRL 655
++LA++FE LV D RFE+ R +V RL+ N L LL +NS G++
Sbjct: 385 HIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKI 444
Query: 656 HCVPASLRIQGLGR-AQNFTRTTNDDITRDWNEIRNTATEILAEL 699
L + + R A T +T W +++ A+++L +
Sbjct: 445 FISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLGKS 489
|
Length = 490 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 5e-17
Identities = 50/216 (23%), Positives = 83/216 (38%), Gaps = 16/216 (7%)
Query: 135 IADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDI-EKVIMPGITHWQSPY 193
+ D R + P + AP + E + ++ ++ E +I + P
Sbjct: 4 LIDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPR 63
Query: 194 MHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHT 253
+ P + ++L A+N SPA ELE +N L ++G PEE
Sbjct: 64 ANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEAS-- 121
Query: 254 KVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313
G + +E+ L+ LLA R E RK + + N CS+ AH S
Sbjct: 122 -------GTFTSGGTEANLLALLAAR-ERWRKRALAESGKPGGKPN----IVCSETAHFS 169
Query: 314 VEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERD 348
EKA + +R + + + D L EAI+ +
Sbjct: 170 FEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDEN 205
|
Length = 460 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 8e-12
Identities = 40/169 (23%), Positives = 51/169 (30%), Gaps = 61/169 (36%)
Query: 528 FRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 587
RALKLW +R FG G +HI I
Sbjct: 229 VRALKLWATLRRFGRDGYGEHIDRI----------------------------------- 253
Query: 588 TNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE---NILTEK 644
V LA+ L+ DP FE+ +L +V RL + L
Sbjct: 254 ----------------VDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDELNYD 297
Query: 645 LLKRLNSKGRLHCVPASLRIQGLGRAQNFT----RTTNDDITRDWNEIR 689
L RLN +G H +L G F TT DD +I
Sbjct: 298 LSDRLNERGGWHVPATTL---GGPNVLRFVVTNPLTTRDDADALLEDIE 343
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 6e-09
Identities = 57/220 (25%), Positives = 85/220 (38%), Gaps = 61/220 (27%)
Query: 485 SLLRVKNSGALHRTFNVEPLYLRHENS--GLAIDYMHWQIPLSKRFRALKLWFVIRNFGI 542
S L VK+ +L P YL + S ++Y WQI LS+RFR+LKLW V+R +G
Sbjct: 364 SPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGS 423
Query: 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQ 602
+ L+ IR+
Sbjct: 424 ENLRNFIRD--------------------------------------------------- 432
Query: 603 SVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLL---GE----NILTEKLLKRLNSKGRL 655
V LA+ FE V DP FE+ R+ +V RL G+ N +LL +NS G++
Sbjct: 433 HVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKI 492
Query: 656 HCVPASLRIQGLGR-AQNFTRTTNDDITRDWNEIRNTATE 694
+L + + R A T +T W I+ A++
Sbjct: 493 FISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASK 532
|
Length = 539 |
| >gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 409 SVRLAQKFEALVLGDPRFEIPAARHLGMVVIRL 441
V LA+ FEALV D RFEI A R LG+V RL
Sbjct: 340 HVELAKYFEALVRKDSRFEICAERGLGLVCFRL 372
|
Length = 373 |
| >gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 410 VRLAQKFEALVLGDPRFEIPAARHLGMVVIRLL-------GENILTEKLLKRLNSKGRL 461
++LA++FE LV D RFE+ R +V RL+ N L LL +NS G++
Sbjct: 386 IKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKI 444
|
Length = 490 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 943 | |||
| KOG0628|consensus | 511 | 100.0 | ||
| PLN02590 | 539 | probable tyrosine decarboxylase | 100.0 | |
| PLN02880 | 490 | tyrosine decarboxylase | 100.0 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 100.0 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 100.0 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 100.0 | |
| KOG0629|consensus | 510 | 100.0 | ||
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 100.0 | |
| PLN02263 | 470 | serine decarboxylase | 100.0 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 100.0 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 100.0 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 100.0 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 100.0 | |
| KOG1383|consensus | 491 | 100.0 | ||
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.96 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.96 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.95 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.93 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.91 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.91 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.89 | |
| PLN02651 | 364 | cysteine desulfurase | 99.87 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.87 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.87 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.86 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.86 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.86 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.86 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.85 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.85 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.85 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.84 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.83 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.83 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.82 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.82 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.79 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.79 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.78 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.77 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.76 | |
| KOG1368|consensus | 384 | 99.76 | ||
| KOG1549|consensus | 428 | 99.75 | ||
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.74 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.73 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.72 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.71 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.68 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.66 | |
| PLN02721 | 353 | threonine aldolase | 99.66 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.65 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.63 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.62 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.6 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.6 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.6 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.59 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.59 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.58 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.58 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.57 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.55 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.53 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.49 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.48 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.43 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.42 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.41 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.38 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.37 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.35 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.35 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.33 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.33 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.32 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.29 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.29 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.29 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.28 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.28 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.27 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.26 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.26 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.25 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.22 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.21 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.2 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.19 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.19 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.18 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.17 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.17 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.17 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.16 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.15 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.14 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.14 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.14 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.13 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.12 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.12 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.09 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.08 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.06 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.05 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.05 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.04 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.03 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.01 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.0 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 98.99 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 98.99 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 98.97 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 98.96 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 98.96 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 98.95 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.95 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 98.94 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 98.94 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 98.94 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 98.94 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 98.93 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 98.92 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 98.92 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 98.91 | |
| PRK07682 | 378 | hypothetical protein; Validated | 98.91 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 98.91 | |
| KOG0630|consensus | 838 | 98.9 | ||
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 98.9 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 98.9 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 98.89 | |
| PRK07324 | 373 | transaminase; Validated | 98.89 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 98.88 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 98.88 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 98.88 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 98.88 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 98.88 | |
| PLN02452 | 365 | phosphoserine transaminase | 98.87 | |
| PRK07777 | 387 | aminotransferase; Validated | 98.87 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 98.86 | |
| PLN02656 | 409 | tyrosine transaminase | 98.85 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 98.85 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 98.85 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 98.85 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 98.85 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 98.85 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 98.84 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 98.83 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 98.83 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 98.82 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.82 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 98.82 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 98.81 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 98.81 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 98.8 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 98.8 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 98.8 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 98.79 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 98.79 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 98.78 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 98.78 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.77 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 98.77 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 98.77 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 98.76 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 98.76 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 98.76 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 98.76 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 98.76 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 98.75 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 98.75 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 98.75 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 98.74 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 98.73 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 98.73 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 98.73 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 98.73 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 98.72 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 98.72 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 98.72 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 98.71 | |
| PLN02509 | 464 | cystathionine beta-lyase | 98.71 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 98.71 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 98.71 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 98.7 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.7 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 98.69 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 98.69 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 98.69 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 98.69 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 98.69 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 98.68 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 98.68 | |
| PRK07337 | 388 | aminotransferase; Validated | 98.68 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 98.67 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 98.67 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 98.67 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 98.67 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 98.67 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 98.67 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 98.66 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 98.66 | |
| KOG0628|consensus | 511 | 98.66 | ||
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 98.66 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 98.65 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 98.65 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 98.65 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 98.65 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 98.64 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 98.64 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 98.63 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 98.63 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 98.62 | |
| PLN02187 | 462 | rooty/superroot1 | 98.62 | |
| PLN02242 | 418 | methionine gamma-lyase | 98.61 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 98.61 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 98.61 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 98.61 | |
| PRK07683 | 387 | aminotransferase A; Validated | 98.61 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 98.61 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 98.61 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 98.6 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.6 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.58 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 98.58 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 98.57 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 98.56 | |
| PRK08068 | 389 | transaminase; Reviewed | 98.53 | |
| PLN02231 | 534 | alanine transaminase | 98.53 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.52 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 98.51 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 98.51 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 98.5 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 98.5 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 98.5 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 98.48 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 98.47 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 98.47 | |
| PRK08175 | 395 | aminotransferase; Validated | 98.47 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 98.46 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 98.44 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.43 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 98.43 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 98.41 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.4 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 98.39 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 98.37 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 98.37 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 98.36 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 98.35 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 98.34 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 98.33 | |
| PRK09148 | 405 | aminotransferase; Validated | 98.32 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 98.3 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 98.3 | |
| KOG2862|consensus | 385 | 98.3 | ||
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 98.3 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 98.29 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 98.28 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 98.27 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 98.26 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 98.24 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 98.23 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.22 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 98.22 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 98.21 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 98.21 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 98.18 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 98.18 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 98.17 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 98.12 | |
| KOG2040|consensus | 1001 | 98.11 | ||
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 98.09 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 98.09 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 98.08 | |
| PRK06855 | 433 | aminotransferase; Validated | 98.08 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 98.06 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 98.05 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 98.01 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 97.97 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 97.94 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 97.94 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 97.91 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 97.9 | |
| PRK07678 | 451 | aminotransferase; Validated | 97.89 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 97.89 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 97.87 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 97.86 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 97.85 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 97.85 | |
| PLN00144 | 382 | acetylornithine transaminase | 97.85 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 97.84 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 97.83 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 97.81 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.81 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 97.78 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 97.77 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 97.77 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 97.76 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 97.76 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 97.75 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 97.74 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 97.74 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 97.73 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 97.72 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 97.72 | |
| PRK06105 | 460 | aminotransferase; Provisional | 97.72 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 97.69 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 97.69 | |
| KOG1359|consensus | 417 | 97.69 | ||
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 97.67 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 97.66 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 97.66 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 97.64 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 97.64 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 97.6 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 97.59 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 97.58 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 97.58 | |
| PLN02368 | 407 | alanine transaminase | 97.58 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 97.57 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 97.57 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 97.56 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 97.55 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 97.54 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 97.54 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 97.53 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 97.52 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 97.52 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.5 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 97.5 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 97.48 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 97.48 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 97.47 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 97.47 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 97.46 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 97.46 | |
| KOG1357|consensus | 519 | 97.43 | ||
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.41 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 97.4 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 97.38 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 97.38 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.37 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 97.36 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.34 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.32 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 97.3 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 97.3 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.25 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 97.24 | |
| PRK07046 | 453 | aminotransferase; Validated | 97.1 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 97.1 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.08 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 97.08 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.08 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 97.08 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 97.05 | |
| KOG0259|consensus | 447 | 96.94 | ||
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 96.85 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 96.63 | |
| KOG0256|consensus | 471 | 96.63 | ||
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 96.56 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 96.56 | |
| KOG0053|consensus | 409 | 96.5 | ||
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 96.45 | |
| KOG2467|consensus | 477 | 96.37 | ||
| KOG0634|consensus | 472 | 96.27 | ||
| KOG1360|consensus | 570 | 96.24 | ||
| KOG0257|consensus | 420 | 96.22 | ||
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 95.94 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 95.93 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 95.52 | |
| PLN02880 | 490 | tyrosine decarboxylase | 95.22 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 95.09 | |
| KOG0258|consensus | 475 | 94.94 | ||
| KOG3843|consensus | 432 | 94.63 | ||
| PLN02397 | 423 | aspartate transaminase | 94.26 | |
| KOG1404|consensus | 442 | 93.38 | ||
| KOG3846|consensus | 465 | 93.03 | ||
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 91.1 | |
| KOG1401|consensus | 433 | 90.84 | ||
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 90.41 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 90.17 | |
| KOG1358|consensus | 467 | 90.11 | ||
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 86.82 | |
| KOG1402|consensus | 427 | 86.38 | ||
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 83.99 | |
| KOG2790|consensus | 370 | 81.33 |
| >KOG0628|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-97 Score=816.18 Aligned_cols=465 Identities=53% Similarity=0.867 Sum_probs=452.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEc
Q psy11047 119 IPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYF 198 (943)
Q Consensus 119 ~~~e~fr~~~~~~vd~i~dyl~~~~~~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~ 198 (943)
|+.++||+.+++|+|+|+||+++++++||+|+++|+|+++++|.++|++|++|++|++|++++|+||++||+||+||+|+
T Consensus 1 Md~~efR~~gk~mVD~IadY~e~ir~r~v~P~v~PGYl~~llP~~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~fhAyf 80 (511)
T KOG0628|consen 1 MDSEEFREEGKEMVDYIADYLENIRKRRVLPDVKPGYLRDLLPSKAPEKPESWEDILGDLEKIIMPGITHWQHPHFHAYF 80 (511)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhhCCCCCCCChhhHHHHHHHHHHHccCCCcccCCCceeeEc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHH
Q psy11047 199 PALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAG 278 (943)
Q Consensus 199 ~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aA 278 (943)
|++.++|+++||||+.+++..|++|.+||++|+||..+++||++|+++|..|++.+ .+.|+|++++++|||+++|+++|
T Consensus 81 pa~~s~~siladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~-~g~GgGviQ~tases~lvallaa 159 (511)
T KOG0628|consen 81 PAGNSYPSILADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLG-LGDGGGVIQGTASESVLVALLAA 159 (511)
T ss_pred cCccchHHHHHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccC-CCCCcceEecCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998766 78899999999999999999999
Q ss_pred HHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEE
Q psy11047 279 RTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358 (943)
Q Consensus 279 R~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~V 358 (943)
|.+.+.+++..+|.+.+..+..++|+|||+|+|+|++|||++|+++++.+++|.+..|+++.|+++|++|.++|++|++|
T Consensus 160 R~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v 239 (511)
T KOG0628|consen 160 RTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFV 239 (511)
T ss_pred HHHHHHHhhcCCCcccchhhhhhheEEecCcccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEE
Confidence 99999999888888877778899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceee
Q psy11047 359 FSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVV 438 (943)
Q Consensus 359 VaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~Vc 438 (943)
++|.|||.++++|+|.+++. +|+++|+ |+||||||+|. +|
T Consensus 240 ~at~GTT~~ca~D~l~elg~--------------------Vc~~~gl-------WLHVDAAYAGs-a~------------ 279 (511)
T KOG0628|consen 240 CATLGTTSSCAFDELEELGP--------------------VCREEGL-------WLHVDAAYAGS-AF------------ 279 (511)
T ss_pred EEeecCccccccccHHHhcc--------------------hhhhcCE-------EEEeehhhccc-cc------------
Confidence 99999999999999999999 9999999 99999999999 65
Q ss_pred eeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccC
Q psy11047 439 IRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHE 509 (943)
Q Consensus 439 FR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~ 509 (943)
+||+++.+++|+++|||+++++|||+. +|++..+.++|+.+|.||.|.
T Consensus 280 -----------------------iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~ 336 (511)
T KOG0628|consen 280 -----------------------ICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHA 336 (511)
T ss_pred -----------------------cCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcch
Confidence 799999999999999999999999999 899988989999999999998
Q ss_pred CCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCC
Q psy11047 510 NSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTN 589 (943)
Q Consensus 510 ~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~ 589 (943)
..+..+||++|++++|||||+||+|+++|.+|.++++++|++
T Consensus 337 ~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~-------------------------------------- 378 (511)
T KOG0628|consen 337 YQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIRE-------------------------------------- 378 (511)
T ss_pred hhccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHH--------------------------------------
Confidence 877789999999999999999999999999999999999999
Q ss_pred CcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEE
Q psy11047 590 FPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGR 669 (943)
Q Consensus 590 ~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR 669 (943)
+++||++|+.++.+++.||+..++.+++||||+++.|..|++|++++|.+|++|++++.+.|+++||
T Consensus 379 -------------h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlR 445 (511)
T KOG0628|consen 379 -------------HVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGDNEINEALLNRLNSSGRIHLVPASLHGKFVLR 445 (511)
T ss_pred -------------HHHHHHHHHHHhhcCCcceeecccccceeEEeecCCcHHHHHHHHHHHhcCcEEEEEeeecceEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred E-eecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 670 A-QNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 670 ~-v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
+ ++++.|+++||+..|+.|.+.+..+...
T Consensus 446 f~V~s~~t~~~di~~a~~~I~~~a~~l~~~ 475 (511)
T KOG0628|consen 446 FAVCSPLTNESDIDEAWKIIFEAADELFEA 475 (511)
T ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 9 9999999999999999999999987776
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-86 Score=771.73 Aligned_cols=454 Identities=37% Similarity=0.621 Sum_probs=417.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCC----CCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCc
Q psy11047 118 KIPLIPVILVGKEMVDYIADYLENIRD----RRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPY 193 (943)
Q Consensus 118 ~~~~e~fr~~~~~~vd~i~dyl~~~~~----~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPr 193 (943)
+|+.++||+.+++++|.+++|++++.+ +||.+.++|++++++++.++|++|++++++++++.+.|+|++++|+||+
T Consensus 53 ~m~~~~~r~~~~~~~d~i~~~~~~~~~~~~~~pv~~~~~p~~l~~~l~~~~P~~g~~~~~il~~~~~~i~p~~~~~~hP~ 132 (539)
T PLN02590 53 PMDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGITHWQSPS 132 (539)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCChHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCcCCCCC
Confidence 389999999999999999999999887 7999999999999999999999999999999999999999999999999
Q ss_pred eeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHH
Q psy11047 194 MHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLI 273 (943)
Q Consensus 194 f~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~ 273 (943)
|+||+++++++++++||+|++++|+++++|..||++++||++|++||++|+|+|+.|+. .+.++|+||+||||||++
T Consensus 133 f~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~---~~~~gG~~~sGgSeAnl~ 209 (539)
T PLN02590 133 YFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLS---TGNGGGVIQGTGCEAVLV 209 (539)
T ss_pred eeEeccCCCcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCccccc---CCCCceEEcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987652 234689999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCC--ccEEEEecC--CCCCcCHHHHHHHHHHh
Q psy11047 274 CLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGL--VNMRYIESD--DKLSLRGDKLIEAIERD 348 (943)
Q Consensus 274 AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~--~~v~~Vp~D--~~grmD~daLe~aI~~d 348 (943)
||++||+++++.. |.. ..++++||+|+++|||+.||+. +|. .+++.||+| ++++||+++|+++|+++
T Consensus 210 al~aAR~~~~~~~-----g~~---~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d 281 (539)
T PLN02590 210 VVLAARDRILKKV-----GKT---LLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHD 281 (539)
T ss_pred HHHHHHHHHHhhh-----ccc---CCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHH
Confidence 9999999876432 111 1257899999999999999995 554 579999998 46899999999999999
Q ss_pred hccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcccc
Q psy11047 349 KKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI 428 (943)
Q Consensus 349 ~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeL 428 (943)
.++|..|++||+|+|||++|+||||++|++ +|++||+ |+||||||||+ ++
T Consensus 282 ~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~--------------------i~~~~g~-------WlHVDaA~GG~-al-- 331 (539)
T PLN02590 282 LAKGFIPFFICATVGTTSSAAVDPLVPLGN--------------------IAKKYGI-------WLHVDAAYAGN-AC-- 331 (539)
T ss_pred HhcCCCcEEEEEEeCCCCCcccCCHHHHHH--------------------HHHHhCC-------eEEEecchhhh-hh--
Confidence 999999999999999999999999999999 9999999 99999999998 43
Q ss_pred ccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhc
Q psy11047 429 PAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTF 499 (943)
Q Consensus 429 p~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af 499 (943)
++++++++++|+++||||++||||||+ +|++..|.++|
T Consensus 332 ---------------------------------~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~ 378 (539)
T PLN02590 332 ---------------------------------ICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDAL 378 (539)
T ss_pred ---------------------------------cChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHh
Confidence 578899999999999999999999998 78888888889
Q ss_pred ccCccccccCC--CCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhc
Q psy11047 500 NVEPLYLRHEN--SGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVK 577 (943)
Q Consensus 500 ~~~p~YL~~~~--~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~ 577 (943)
...++||.... .+..+|+.+|++++||||+|||+|++|+.+|.+||+++|++
T Consensus 379 ~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~-------------------------- 432 (539)
T PLN02590 379 KTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRD-------------------------- 432 (539)
T ss_pred hcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 99999996532 23457899999999999999999999999999999999999
Q ss_pred ccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecC-------CChHHHHHHHHHh
Q psy11047 578 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLG-------ENILTEKLLKRLN 650 (943)
Q Consensus 578 ~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g-------~n~l~~~Ll~~L~ 650 (943)
++++|++|+++|+++|+||++.+|.+++||||+.+ .|.+|.+|+++|+
T Consensus 433 -------------------------~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~ 487 (539)
T PLN02590 433 -------------------------HVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVN 487 (539)
T ss_pred -------------------------HHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999975 2578899999999
Q ss_pred ccCcEEEeecccCCCcEEEE-eecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 651 SKGRLHCVPASLRIQGLGRA-QNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 651 ~~G~~~~s~t~~~g~~~lR~-v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
++|.+|++++.++|+.+||+ ++||.|+++||+.+|+.|.+.+.++-
T Consensus 488 ~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~ 534 (539)
T PLN02590 488 STGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFT 534 (539)
T ss_pred hCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999 89999999999999999999876653
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-81 Score=722.20 Aligned_cols=456 Identities=38% Similarity=0.666 Sum_probs=416.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEE
Q psy11047 118 KIPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAY 197 (943)
Q Consensus 118 ~~~~e~fr~~~~~~vd~i~dyl~~~~~~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~ 197 (943)
.|+.++||+.+++++|.+.+|+++++++||+|..+|+++++.++..+|++|++++++++++.+.++|++++|+||+|+||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~hP~f~~~ 88 (490)
T PLN02880 9 PMDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQAKILPGVTHWQSPNYFAY 88 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEe
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHH
Q psy11047 198 FPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLA 277 (943)
Q Consensus 198 ~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~a 277 (943)
+++++++++++||++++++|+++++|+.||++++||++|++||++|+|+|+.|+. .+.++|+||+|||+||++||++
T Consensus 89 ~~~~~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~---~~~~gG~~tsggs~anl~al~~ 165 (490)
T PLN02880 89 YPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLS---TGNGGGVIQGTASEAVLVVLLA 165 (490)
T ss_pred ccCCCcHHHHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhc---CCCCceEEcCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987541 2346899999999999999999
Q ss_pred HHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH-HHCC--ccEEEEecCC--CCCcCHHHHHHHHHHhhccC
Q psy11047 278 GRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG-LIGL--VNMRYIESDD--KLSLRGDKLIEAIERDKKKH 352 (943)
Q Consensus 278 AR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa-~LG~--~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG 352 (943)
||++.++..+.. + .++++||+|+++|||+.||+ .+|. .+++.||+|. +++||+++|+++|+++.++|
T Consensus 166 AR~~~~~~~g~~--~------~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g 237 (490)
T PLN02880 166 ARDRVLRKVGKN--A------LEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSG 237 (490)
T ss_pred HHHHHHHHhccc--c------cCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCC
Confidence 999876533211 1 25689999999999999999 4665 4799999974 78999999999999999999
Q ss_pred CCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcccccccc
Q psy11047 353 LIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR 432 (943)
Q Consensus 353 ~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~ 432 (943)
..|++||+|+|||++|++|||++|++ +|++||+ |+||||||||+ ++
T Consensus 238 ~~p~~vvataGTT~~GaiDpl~eI~~--------------------i~~~~~i-------wlHVDaA~gg~-~~------ 283 (490)
T PLN02880 238 LIPFFLCATVGTTSSTAVDPLLELGK--------------------IAKSNGM-------WFHVDAAYAGS-AC------ 283 (490)
T ss_pred CccEEEEEecCCCcCcccCcHHHHHH--------------------HHHHcCC-------EEEEehhhHHH-HH------
Confidence 99999999999999999999999999 9999999 99999999998 33
Q ss_pred ccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCc
Q psy11047 433 HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEP 503 (943)
Q Consensus 433 ~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p 503 (943)
++++++++++|+++||||++|+||||+ +|++..+..++...+
T Consensus 284 -----------------------------~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~ 334 (490)
T PLN02880 284 -----------------------------ICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNP 334 (490)
T ss_pred -----------------------------hCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCH
Confidence 567889999999999999999999999 677777777888899
Q ss_pred cccccCCC--CcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccccc
Q psy11047 504 LYLRHENS--GLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGF 581 (943)
Q Consensus 504 ~YL~~~~~--g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~ 581 (943)
.||.+... ...+|+.+|++++|||++|+++|++|+.+|.+||++++++
T Consensus 335 ~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~------------------------------ 384 (490)
T PLN02880 335 EFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRN------------------------------ 384 (490)
T ss_pred HHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHH------------------------------
Confidence 99976432 2246889999999999999999999999999999999999
Q ss_pred ccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCC-------ChHHHHHHHHHhccCc
Q psy11047 582 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE-------NILTEKLLKRLNSKGR 654 (943)
Q Consensus 582 ~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~-------n~l~~~Ll~~L~~~G~ 654 (943)
++++|+++++.|++.|+||++.++.+++||||+.+. |.+|.+|+++|+++|.
T Consensus 385 ---------------------~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~ 443 (490)
T PLN02880 385 ---------------------HIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGK 443 (490)
T ss_pred ---------------------HHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCC
Confidence 467999999999999999999999999999999752 5678899999999999
Q ss_pred EEEeecccCCCcEEEE-eecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 655 LHCVPASLRIQGLGRA-QNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 655 ~~~s~t~~~g~~~lR~-v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
++++++.++++.++|+ +.+|.|+++||+.+++.|.+++.++..+
T Consensus 444 ~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~~ 488 (490)
T PLN02880 444 IFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLGK 488 (490)
T ss_pred EEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 8899999999999999999999887553
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=621.18 Aligned_cols=453 Identities=16% Similarity=0.166 Sum_probs=371.7
Q ss_pred eecCCCCCCChHHHHHHHHHHHHHHHHHHHh--cCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCC
Q psy11047 111 VVNPQSRKIPLIPVILVGKEMVDYIADYLEN--IRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITH 188 (943)
Q Consensus 111 fl~p~~~~~~~e~fr~~~~~~vd~i~dyl~~--~~~~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~ 188 (943)
|-.|.+.+ ..+....+++.+.++||+.+ ...+++.+.+.++.. ...+|++|.+.+++++++.+.++++++|
T Consensus 14 f~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 86 (522)
T TIGR03799 14 FTVPEAPD---STLGRIEQKISQNLAGFLQEHIVAIEKPLSEIEKDFS----SAEIPEQPTFVSEHTQFLLDKLVAHSVH 86 (522)
T ss_pred cCCCCCCc---hHHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhccc----ccCCCCCCCChHHHHHHHHHHHHcCCCC
Confidence 45555544 56666777777777777666 444466665554433 3578999999999999999999999999
Q ss_pred CCCCceeEEccCC-CChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCC-Ccccccc--CcCCCCcEEEc
Q psy11047 189 WQSPYMHAYFPAL-NSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGL-PEEFLHT--KVDSPGGGVLQ 264 (943)
Q Consensus 189 ~~sPrf~g~~~~~-~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~-p~~fl~~--~~~~~~~GvfT 264 (943)
|+||+|+|||+++ +.+...+++ +++++|+|++.|+.||++++||++|++||++|++. ++.|... .....++|+||
T Consensus 87 ~~hP~f~g~~~~~~p~~~~~l~~-l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~t 165 (522)
T TIGR03799 87 TASPSFIGHMTSALPYFMLPLSK-LMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFC 165 (522)
T ss_pred CCCCCeEEeccCCCchHHHHHHH-HHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEc
Confidence 9999999999996 333334777 66789999999999999999999999999999963 3222110 11234689999
Q ss_pred CChHHHHHHHHHHHHHHHHHhhc----ccCCCchh---hhcCCceEEEecCCCchHHHHHHH-HCC--ccEEEEecCCCC
Q psy11047 265 TTASESTLICLLAGRTEAIRKYQ----QSHPELEH---AEINSRLVAYCSDQAHSSVEKAGL-IGL--VNMRYIESDDKL 334 (943)
Q Consensus 265 sGGTeANL~AL~aAR~~~l~~~~----~~~pGl~~---~~i~~~~vV~~S~~aHySv~KAa~-LG~--~~v~~Vp~D~~g 334 (943)
+|||+||++|||+||+++++..+ ....|+.. +....+++||+|+.+|||+.||+. +|. .+++.||+|++|
T Consensus 166 sGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g 245 (522)
T TIGR03799 166 SGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANN 245 (522)
T ss_pred CchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCC
Confidence 99999999999999998654321 11122211 001246899999999999999994 554 489999999999
Q ss_pred CcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhh
Q psy11047 335 SLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 414 (943)
Q Consensus 335 rmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwL 414 (943)
+||+++|+++|+++.++|..|++|++|+|||++|++|||++|++ +|++||+ |+
T Consensus 246 ~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~--------------------i~~~~g~-------~l 298 (522)
T TIGR03799 246 RIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMAD--------------------IAQELGC-------HF 298 (522)
T ss_pred cCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHH--------------------HHHHcCC-------eE
Confidence 99999999999999888989999999999999999999999999 9999999 99
Q ss_pred hHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC------
Q psy11047 415 KFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR------ 488 (943)
Q Consensus 415 HVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~------ 488 (943)
||||||||+ .+ ++++++++++|+++||||++|+|||++
T Consensus 299 HVDaA~gg~-~~-----------------------------------~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G 342 (522)
T TIGR03799 299 HVDAAWGGA-TL-----------------------------------LSNTYRHLLKGIERADSVTIDAHKQLYVPMGAG 342 (522)
T ss_pred EEEchhhhH-HH-----------------------------------hCHHHHHHhcCchhCCEEEEChhhcCCcCcccE
Confidence 999999987 33 467788999999999999999999998
Q ss_pred ---ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Q psy11047 489 ---VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVD 565 (943)
Q Consensus 489 ---vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~ 565 (943)
+|++.. .+.+...++|+...+ ..|++++++++||+++++++|++|+.+|..||++++++
T Consensus 343 ~llvr~~~~-~~~~~~~~~Yl~~~~---~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~-------------- 404 (522)
T TIGR03799 343 MVLFKDPAL-MSAIEHHAEYILRKG---SKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQ-------------- 404 (522)
T ss_pred EEEEeCHHH-HHHhccCcchhcCCC---CCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHH--------------
Confidence 677654 356777889986432 24678899999999999999999999999999999999
Q ss_pred cccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecC--------
Q psy11047 566 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLG-------- 637 (943)
Q Consensus 566 ~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g-------- 637 (943)
.+++|++|++.|++.|+|+++.+|.+++||||+.+
T Consensus 405 -------------------------------------~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~ 447 (522)
T TIGR03799 405 -------------------------------------SIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALA 447 (522)
T ss_pred -------------------------------------HHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhccccc
Confidence 46799999999999999999999999999999864
Q ss_pred -------------CChHHHHHHHHHhccCcEEEeecccC-------CCcEEEE-eecCCCCHHHHHHHHHHHH
Q psy11047 638 -------------ENILTEKLLKRLNSKGRLHCVPASLR-------IQGLGRA-QNFTRTTNDDITRDWNEIR 689 (943)
Q Consensus 638 -------------~n~l~~~Ll~~L~~~G~~~~s~t~~~-------g~~~lR~-v~~~~tt~edId~ll~~I~ 689 (943)
.|.+|+.+.++++++|..|+++|.++ +..++|+ ++||.||.+||+.+++.-+
T Consensus 448 ~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~~~ 520 (522)
T TIGR03799 448 KADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDEQR 520 (522)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHHhh
Confidence 14577899999999999999988765 3478999 8899999999999987644
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-68 Score=624.03 Aligned_cols=489 Identities=14% Similarity=0.117 Sum_probs=380.7
Q ss_pred cceeeecCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcC
Q psy11047 107 GKIFVVNPQSRKIPLIPVILVGKEMVDYIADYLENIRDRRVY--PDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMP 184 (943)
Q Consensus 107 ~~~~fl~p~~~~~~~e~fr~~~~~~vd~i~dyl~~~~~~pV~--p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~ 184 (943)
.+.+|||||+||. +.|++++.+++|.+.+|+++.. .+ +.++|.++++ ....+...+++++++++.+.+.+
T Consensus 4 ~~a~flgpk~en~--~~~~~~~~~~~~~~~~~r~~~~---p~d~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~l~~ 75 (608)
T TIGR03811 4 LNALFIGDKAENG--QLYKDLLNKLVDEHLGWRQNYM---PQDKPVISPQERTS---KSFTKTVNNMKDVLDELSSRLRT 75 (608)
T ss_pred hhheeecCcccCH--HHHHHHHHHHHHHHHHHHHhcC---CCCCCCCCHHHhcc---cccccCccCHHHHHHHHHHHHhc
Confidence 3678999999995 6899999999999999998822 22 3456666655 25566677899999999999999
Q ss_pred CCCCCCCC-ceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE
Q psy11047 185 GITHWQSP-YMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL 263 (943)
Q Consensus 185 ~~~~~~sP-rf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf 263 (943)
++++|+|| ||+|||++++++|+++|+++++++|+|++.|+.||++++||++|++|||+|+|++. ++|+|
T Consensus 76 ~sv~~~~P~ry~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~----------~~G~~ 145 (608)
T TIGR03811 76 ESVPWHSAGRYWGHMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKN----------GWGHI 145 (608)
T ss_pred CCCCCCCccceEEECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCC----------CCeEE
Confidence 99999999 99999999999999999999999999999999999999999999999999999985 48999
Q ss_pred cCChHHHHHHHHHHHHHHHH-----Hhhcc------cCCC----------------------chhh-----hcCCce-EE
Q psy11047 264 QTTASESTLICLLAGRTEAI-----RKYQQ------SHPE----------------------LEHA-----EINSRL-VA 304 (943)
Q Consensus 264 TsGGTeANL~AL~aAR~~~l-----~~~~~------~~pG----------------------l~~~-----~i~~~~-vV 304 (943)
|+|||+||++|||+||+... +.... ..++ +... ....++ ++
T Consensus 146 TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~v 225 (608)
T TIGR03811 146 VADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKW 225 (608)
T ss_pred eCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEE
Confidence 99999999999999999641 11000 0000 0000 001223 79
Q ss_pred EecCCCchHHHHHH-HHCC--ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 305 YCSDQAHSSVEKAG-LIGL--VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 305 ~~S~~aHySv~KAa-~LG~--~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
++|+.+|||+.||+ .+|. .+++.||+|++++||+++|++.|+++.++|.+|++||+|+|||++|+||||++|++
T Consensus 226 l~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~--- 302 (608)
T TIGR03811 226 LVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVA--- 302 (608)
T ss_pred EECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHH---
Confidence 99999999999999 4555 58999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCchHHHH---HHcCCCCCccchhhhHHhhhcCCCc-cccccc---cccceeeeeecchhhhHHHHHHH
Q psy11047 382 VKGLGFYKMKLQTNFPNFI---LSYFPKFQSVRLAQKFEALVLGDPR-FEIPAA---RHLGMVVIRLLGENILTEKLLKR 454 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~ia---r~~Gl~~~~l~lwLHVDAA~GG~~a-feLp~~---~~Lg~VcFR~~~~ne~n~kll~~ 454 (943)
+| +++|+ .+|+||||||||+.. +-+.-+ .++...+.++.....+
T Consensus 303 -----------------l~~~~~~~gl-----~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f------- 353 (608)
T TIGR03811 303 -----------------LRNKLMKEGI-----YFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVF------- 353 (608)
T ss_pred -----------------HHHHHHHcCC-----ceeEeeeccccchhhhhhccccccccccchhhccccccccc-------
Confidence 87 66787 456999999999731 100000 0000000000000000
Q ss_pred hhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCC
Q psy11047 455 LNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLS 525 (943)
Q Consensus 455 l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~S 525 (943)
.+....++++++++++|+++|||||+||||||+ +|++. +.+.+...++||...+.+.....+.++++||
T Consensus 354 -~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~-~~~~~~~~a~Yl~~~~~~~p~~~g~~~legS 431 (608)
T TIGR03811 354 -TEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIR-MRDVISYFATYVFEKGADIPALLGAYILEGS 431 (608)
T ss_pred -ccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHH-HHHHHhcCcchhccccccCcccccccceecC
Confidence 011112456788999999999999999999999 78875 5567788999997643322224678899999
Q ss_pred CC-cchHHHHHHHHHH--HHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHH
Q psy11047 526 KR-FRALKLWFVIRNF--GIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQ 602 (943)
Q Consensus 526 Rr-frALklW~tLr~~--G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~ 602 (943)
|+ ++|+++|++++.+ |.+||+++|++
T Consensus 432 R~ga~AlklW~~lr~l~~G~~Gyg~~i~~--------------------------------------------------- 460 (608)
T TIGR03811 432 KAGATAASVWAAHKVLPLNVTGYGKLIGA--------------------------------------------------- 460 (608)
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHH---------------------------------------------------
Confidence 96 7899999999999 99999999999
Q ss_pred HHHHHHHHHHHHhC------CCCeEE--ecCCCccEEEEEecC--------CChHHHHHHHHHh-ccC-----cEEEeec
Q psy11047 603 SVRLAQKFEALVLG------DPRFEI--PAARHLGMVVIRLLG--------ENILTEKLLKRLN-SKG-----RLHCVPA 660 (943)
Q Consensus 603 ~~~LA~~l~~~L~~------~p~~eI--l~~~~l~iV~Fr~~g--------~n~l~~~Ll~~L~-~~G-----~~~~s~t 660 (943)
.+++|++|++.|++ .|+||+ +.+|++|+||||+.. .|++|.++.+++. .+| .++++.|
T Consensus 461 ~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~~~~g~~~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t 540 (608)
T TIGR03811 461 SIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVFNEKGNDDLVKMNKLNHAFYDYASYVKGSIYNNEFITSHT 540 (608)
T ss_pred HHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEEecCCCccHHHHHHHHHHHHHhhccccCCCCCcceEeeec
Confidence 45788999999988 688888 789999999999863 2567888888876 233 3445544
Q ss_pred cc--------------------------CCCcEEEE-eecCCCCH-HHHHHHHHHHHHHHHHHHHH
Q psy11047 661 SL--------------------------RIQGLGRA-QNFTRTTN-DDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 661 ~~--------------------------~g~~~lR~-v~~~~tt~-edId~ll~~I~~~~~~ll~~ 698 (943)
.+ ..-.+||. +++|..++ +.++.+++.|+.+..+.+.+
T Consensus 541 ~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~m~p~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (608)
T TIGR03811 541 DFAIPDYGDSPFAFVNSLGFSDEEWQRAGKVTILRASVMTPYMNDKENFDEYAPKIKAAMQEKLEK 606 (608)
T ss_pred ccccchhhhhHHHHHHHcCCChhhhccCCceEEEEEEecCcccCChhhHHHHHHHHHHHHHHHHHh
Confidence 21 11358998 88888665 77889998888887776654
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=608.30 Aligned_cols=361 Identities=32% Similarity=0.544 Sum_probs=318.0
Q ss_pred hhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHH
Q psy11047 153 PGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTEL 232 (943)
Q Consensus 153 p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateL 232 (943)
|+++++.++..+|++|++++++++++.+.+.++..+|+||+|+||+++++++++++|++++.++|+|+..|+.+|++++|
T Consensus 1 P~~l~~~~~~~lp~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~ 80 (373)
T PF00282_consen 1 PGELRARLDEELPEEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLASALNQNGFTWEASPAATEI 80 (373)
T ss_dssp TTSSGGGCHCCHHSSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHH
T ss_pred ChhhhhcCccccccCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHhhhcccccccccccccccc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
|.++++|+++|+|+|.++.. ...++|+||+|||+||++||++||+++.++.+.. |.. + ..++++|+|+++||
T Consensus 81 E~~vi~~l~~l~g~~~~~~~---~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~--~~~--~-~~~~~i~~s~~aH~ 152 (373)
T PF00282_consen 81 EREVIRWLADLFGLPESFTF---SKDAGGVFTSGGTEANLYALLAARERALPRSKAK--GVE--E-IPKPVIYVSEQAHY 152 (373)
T ss_dssp HHHHHHHHHHHTTGSGGTTS---TTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHH--TTT--H-CSSEEEEEETTS-T
T ss_pred hHHHHHHHHHHhCCcccccc---cCCCceeEeccchHHHHHHHHHHHHHHhhhhhhc--ccc--c-cccccccccccccc
Confidence 99999999999999976422 1237899999999999999999999987654432 211 0 36789999999999
Q ss_pred HHHHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 313 SVEKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 313 Sv~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
|+.||+. +|.. ++.||+|++|+||+++|+++|+++.++|..|++|++|+|||.+|++||+++|++
T Consensus 153 S~~Kaa~~lGlg-~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~------------- 218 (373)
T PF00282_consen 153 SIEKAARILGLG-VRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIAD------------- 218 (373)
T ss_dssp HHHHHHHHTTSE-EEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHH-------------
T ss_pred HHHHhcceeeeE-EEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhh-------------
Confidence 9999994 6765 999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhc
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQ 471 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~ 471 (943)
+|++|++ |+||||||||+ ++ +++.+++++.
T Consensus 219 -------i~~~~~~-------wlHVDaA~gg~-~~-----------------------------------~~~~~~~~~~ 248 (373)
T PF00282_consen 219 -------ICEKYNI-------WLHVDAAYGGS-AL-----------------------------------LSPEYRHLLF 248 (373)
T ss_dssp -------HHHHCT--------EEEEEETTGGG-GG-----------------------------------GHCTTGGGGT
T ss_pred -------hccccce-------eeeeccccccc-cc-----------------------------------cccccccccc
Confidence 9999999 99999999997 44 5788889999
Q ss_pred CCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccCC--CCcccccCccccCCCCCcchHHHHHHHHHH
Q psy11047 472 GLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHEN--SGLAIDYMHWQIPLSKRFRALKLWFVIRNF 540 (943)
Q Consensus 472 Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~--~g~~~d~~~~tie~SRrfrALklW~tLr~~ 540 (943)
|+++||||++|+||||+ +|++..+..++...++||.+.. .+...++.++++++||+++++++|++|+.+
T Consensus 249 gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~ 328 (373)
T PF00282_consen 249 GIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSL 328 (373)
T ss_dssp TGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccccchHHHHHHHHHhc
Confidence 99999999999999999 7998888888888999999653 344568889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCe
Q psy11047 541 GIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 620 (943)
Q Consensus 541 G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~ 620 (943)
|.+||+++|++ .+++|++|++.|++.|+|
T Consensus 329 G~~G~~~~i~~---------------------------------------------------~~~~a~~l~~~l~~~~~~ 357 (373)
T PF00282_consen 329 GREGYRERIRR---------------------------------------------------CIELARYLADRLRKDPRF 357 (373)
T ss_dssp HHHHHHHHHHH---------------------------------------------------HHHHHHHHHHHHHTSTTE
T ss_pred CHHHHHHHHHH---------------------------------------------------HHHHHHHHHHHHHhCCCE
Confidence 99999999999 467899999999999999
Q ss_pred EEecCCCccEEEEEec
Q psy11047 621 EIPAARHLGMVVIRLL 636 (943)
Q Consensus 621 eIl~~~~l~iV~Fr~~ 636 (943)
|++.++.+++||||++
T Consensus 358 el~~~~~~~~vcFr~k 373 (373)
T PF00282_consen 358 ELVNEPDLNIVCFRYK 373 (373)
T ss_dssp EESSTTSSSEEEEEES
T ss_pred EEEcCCCceEEEEEeC
Confidence 9999999999999985
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >KOG0629|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-65 Score=557.89 Aligned_cols=460 Identities=19% Similarity=0.260 Sum_probs=397.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEcc
Q psy11047 122 IPVILVGKEMVDYIADYLENIRDR--RVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFP 199 (943)
Q Consensus 122 e~fr~~~~~~vd~i~dyl~~~~~~--pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~ 199 (943)
+..+..+.++++.+.+|...--+| .|.+.+.|..|+..++.++|+++++.++|+++.++.+..+.. ..||||+....
T Consensus 31 ~~te~fl~~v~~~ll~~v~~~~dr~~kv~~fhhP~~L~~l~nlel~~~~esl~qil~~cr~tl~y~vK-TgHprffNQl~ 109 (510)
T KOG0629|consen 31 EVTEPFLRAVVDILLDYVKKGFDRSQKVLDFHHPDELKELFNLELRDQPESLAQILEDCRDTLKYSVK-TGHPRFFNQLS 109 (510)
T ss_pred hhhHhhhHHHHHHHHHhhccCCcccceeecccChHHHHHHhCcccCCChhhHHHHHHHHHHHHHhhhc-cCCCcchhhhc
Confidence 455888889999999996654444 789999999999999999999999999999999998775544 58999999999
Q ss_pred CCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHH
Q psy11047 200 ALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGR 279 (943)
Q Consensus 200 ~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR 279 (943)
++..+.+++|++++++.|.|.++|+.+|+.+.||.+|+..+.+++||+.. ++|+|++||+.||++|+.+||
T Consensus 110 ~glD~~~Lag~wlT~t~Ntn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~---------~DgIf~pggsisn~Ya~~~Ar 180 (510)
T KOG0629|consen 110 SGLDPIGLAGEWLTSTANTNMFTYEIAPVFVLMEEEVLAKMREIVGWEEG---------GDGIFAPGGSISNMYAMNCAR 180 (510)
T ss_pred cCCCHHHHHHHHHHhccCCCCceEEecceEEeehHHHHHHHHHHhCCCCC---------CCceecCCchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999874 689999999999999999999
Q ss_pred HHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH-HH--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcE
Q psy11047 280 TEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG-LI--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPF 356 (943)
Q Consensus 280 ~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa-~L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~ 356 (943)
.+.+++.+. .|+. ..+++++|+|+++|||+.||+ .+ |..+++.|++|++|.|++++||+.|-++.++|..|+
T Consensus 181 yk~~Pe~K~--~Gm~---~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf 255 (510)
T KOG0629|consen 181 YKNFPEVKT--KGMF---ALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPF 255 (510)
T ss_pred hhcCchhhh--hhhh---cCCcEEEEecccchhhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCe
Confidence 887654332 2332 247899999999999999988 44 567999999999999999999999999999999999
Q ss_pred EEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccce
Q psy11047 357 FIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGM 436 (943)
Q Consensus 357 ~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~ 436 (943)
+|++|+|||+.|++|||..|++ +|++|++ |+||||||||+ .+
T Consensus 256 ~vnaTaGTTV~GAFDdL~~iad--------------------iC~k~~l-------WmHvDAAwGGg-lL---------- 297 (510)
T KOG0629|consen 256 FVNATAGTTVLGAFDDLNGIAD--------------------ICEKHKL-------WMHVDAAWGGG-LL---------- 297 (510)
T ss_pred EEEecCCceeeeccCcHHHHHH--------------------HHHhcCE-------EEEeecccccc-cc----------
Confidence 9999999999999999999999 9999999 99999999998 43
Q ss_pred eeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccc
Q psy11047 437 VVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLR 507 (943)
Q Consensus 437 VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~ 507 (943)
++..+|+++.|+++|||++++|||+++ +|....|.++...++.||+
T Consensus 298 -------------------------mS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLF 352 (510)
T KOG0629|consen 298 -------------------------MSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLF 352 (510)
T ss_pred -------------------------cChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhh
Confidence 566789999999999999999999999 6777777778788999999
Q ss_pred cCC--CCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccccccccc
Q psy11047 508 HEN--SGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 585 (943)
Q Consensus 508 ~~~--~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~ 585 (943)
..+ +...+|.++..++|+|+...+|+|++|++-|..||++.|++++. +++|| .++|+++.+|+.+.
T Consensus 353 q~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~---lA~yl---------~~~lrer~~~~~l~ 420 (510)
T KOG0629|consen 353 QQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLR---LAEYL---------YDRLREREGFEMLF 420 (510)
T ss_pred ccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHH---HHHHH---------HHHHHhcccceehh
Confidence 876 34568899999999999999999999999999999999999887 56777 68899999988875
Q ss_pred -ccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCC
Q psy11047 586 -LQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRI 664 (943)
Q Consensus 586 -~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g 664 (943)
.+|++.|+||||+|++ ++--+ ..+.... | ...+...+..++..+|.++++..++..
T Consensus 421 ~~~pe~~nv~fw~vp~~--lR~~~-------~~~e~~~-----------r---L~kVaPkIK~~Mm~~Gt~Mi~YqPl~~ 477 (510)
T KOG0629|consen 421 ELEPEHVNVCFWYVPPS--LRGWQ-------ENPERDS-----------R---LVKVAPKIKERMMKKGTTMIGYQPLGD 477 (510)
T ss_pred cCCCceEEEeeccCchH--hccCc-------ccchhhh-----------H---HHhhCcHHHHHHHhccceeeEeccccc
Confidence 5699999999999983 32100 1110000 0 012346788899999999998776654
Q ss_pred -CcEEEE-eecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 665 -QGLGRA-QNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 665 -~~~lR~-v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+.++|+ +.++..+.+|++.++++|.++++.
T Consensus 478 ~~nffr~v~sn~a~~~ad~dflldEIerlgq~ 509 (510)
T KOG0629|consen 478 KPNFFRMVISNPALTEADLDFLLDEIERLGQD 509 (510)
T ss_pred ccchhheecccchhhhhhHHHHHHHHHHhccC
Confidence 458999 778889999999999999998764
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=485.43 Aligned_cols=423 Identities=21% Similarity=0.197 Sum_probs=334.1
Q ss_pred HHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHH-HcCCCCCCCCCceeEEccCCCChHHHHHHHH
Q psy11047 134 YIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKV-IMPGITHWQSPYMHAYFPALNSYPSLLGDML 212 (943)
Q Consensus 134 ~i~dyl~~~~~~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~-I~~~~~~~~sPrf~g~~~~~~s~~silgd~L 212 (943)
.+.++....+.+.+-+...|.+-.......+|+.|.+.++++.++... +.+...++.||+++.|..+.+.+++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~ 82 (460)
T COG0076 3 GLIDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELL 82 (460)
T ss_pred hHHHHHHhhccCCCccccccchhhhhhhccCCccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHH
Confidence 445555555555555555565555555678999999999999999887 6667777789999999999999999999999
Q ss_pred HHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCC
Q psy11047 213 SDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPE 292 (943)
Q Consensus 213 ~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pG 292 (943)
..++|+|.+.|+.+|+++++|++|++|+++|+|+|+. +.|+||+||||||++|+++||+++.+..... .+
T Consensus 83 ~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~---------~~G~~t~GgTean~lal~aar~~~~~~~~~~-~~ 152 (460)
T COG0076 83 VSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEE---------ASGTFTSGGTEANLLALLAARERWRKRALAE-SG 152 (460)
T ss_pred HHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCC---------CceEEEcChHHHHHHHHHHHHHHHHHHhhhc-cc
Confidence 9999999999999999999999999999999999865 5899999999999999999999876432211 11
Q ss_pred chhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc
Q psy11047 293 LEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 293 l~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI 370 (943)
. -.+.++||+|+.+|+|+.||+. +|. .++.++.+. +.+||+++|+++|+++...| +||+|+|||.+|++
T Consensus 153 ~----~~~~P~ii~s~~aH~s~~Kaa~~lG~-~~~~v~~~~~~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~i 223 (460)
T COG0076 153 K----PGGKPNIVCSETAHFSFEKAARYLGL-GLRRVPTVPTDYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSI 223 (460)
T ss_pred c----cCCCCeEEecCcchhHHHHHHHHhCC-CceeEEeccCccccCHHHHHHHHHhhccCc----eEEEEecCCCCCcc
Confidence 1 0134589999999999999995 554 556666655 89999999999999998776 89999999999999
Q ss_pred ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHH
Q psy11047 371 DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEK 450 (943)
Q Consensus 371 DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~k 450 (943)
|||++|++ +|++||+ |+||||||||+ .+ |
T Consensus 224 Ddi~~ia~--------------------ia~~~~i-------~lHVDAA~GG~-~~--p--------------------- 252 (460)
T COG0076 224 DDIEELAD--------------------IAEEYGI-------WLHVDAAFGGF-LL--P--------------------- 252 (460)
T ss_pred CCHHHHHH--------------------HHHHcCC-------cEEEEccccce-ee--c---------------------
Confidence 99999999 9999999 99999999998 22 1
Q ss_pred HHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccc
Q psy11047 451 LLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQ 521 (943)
Q Consensus 451 ll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~t 521 (943)
+..+...+..++++||||++|+||||+ +||+..+.+.....+.|+... +..+++
T Consensus 253 -----------f~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~------~~~~~t 315 (460)
T COG0076 253 -----------FLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGG------GIPNFT 315 (460)
T ss_pred -----------ccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCC------CcCcee
Confidence 122222236789999999999999999 788877777767777777542 345678
Q ss_pred cCCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCc
Q psy11047 522 IPLSKRF-RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPK 600 (943)
Q Consensus 522 ie~SRrf-rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~ 600 (943)
+.+||.. .++++|++++.+|.+||++++++
T Consensus 316 i~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~------------------------------------------------- 346 (460)
T COG0076 316 ILGSRPGRQALALYANLRRLGREGYRKLLDR------------------------------------------------- 346 (460)
T ss_pred EeeccchHHHHHHHHHHHHhCHhHHHHHHHH-------------------------------------------------
Confidence 8999975 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEE-----------EeecccCCCcEEE
Q psy11047 601 FQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH-----------CVPASLRIQGLGR 669 (943)
Q Consensus 601 ~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~-----------~s~t~~~g~~~lR 669 (943)
.+++|+++++.|.+.+.||++.+|.+++||||+++....-....+++++.||.. +..+++.++..++
T Consensus 347 --~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~~~~~~~~~~~~~~~~gw~v~~~~~~~~~~~v~~~~~~~~~~~~ 424 (460)
T COG0076 347 --TLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTLADLSERLDRRGWQVPAQLLPKGLAIVFGTHVTGRQGLK 424 (460)
T ss_pred --HHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCCcccchhchHHHHHhcCceeecccCCccceeeeeeEEeeeeeeh
Confidence 457899999999999999999999999999999653222344555565555532 2333444455666
Q ss_pred E-eecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 670 A-QNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 670 ~-v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
+ +.++.++.++ +.++..+...+.++
T Consensus 425 ~~~~~~~~~~~~-~~~~~~~~~~~~~~ 450 (460)
T COG0076 425 FIVANLLITDRE-ESLLALIEEPGREI 450 (460)
T ss_pred hhcchhhhhhhh-HHHHHHhhhhhhhh
Confidence 6 5666666666 55555554444443
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-53 Score=483.01 Aligned_cols=356 Identities=14% Similarity=0.156 Sum_probs=294.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCceeEEccCCCCh-HHHHHHHHHHHHhccCccccCCh---hHHHHHHHHHHHHHHHhCC
Q psy11047 171 WDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSY-PSLLGDMLSDAINCLGFTWASSP---ACTELEIITMNWLGKMIGL 246 (943)
Q Consensus 171 ~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~-~silgd~L~~alN~n~~~~~~SP---aateLE~~Vi~wLa~LlG~ 246 (943)
++++|+++.+.+.++..| |+|| |...++ ++.+++++...+|+.++.|..+| .+++||++|++|+++|+|+
T Consensus 75 ~~~~l~~~~~~~~~~~~~-----~~gY-p~n~~~d~s~l~~~l~~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~ 148 (470)
T PLN02263 75 MASVLARYRKTLVERTKH-----HLGY-PYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEI 148 (470)
T ss_pred HHHHHHHHHHHHHhcccc-----eeCC-CCcccCChhhHHHHHHhhccCCCCccccCCcchhHHHHHHHHHHHHHHHhCC
Confidence 689999999999887554 8999 666677 89999999999999999999999 7999999999999999999
Q ss_pred CccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccE
Q psy11047 247 PEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNM 325 (943)
Q Consensus 247 p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v 325 (943)
|++ ..+|+||+||||||++||++||++. ++.++|+|+++|||+.||+. +|. ++
T Consensus 149 p~~--------~~~G~vtsGGTEaNL~Al~aARe~~-----------------~~~vvy~S~~aH~Sv~KAa~llgi-~~ 202 (470)
T PLN02263 149 EKN--------EYWGYITNCGTEGNLHGILVGREVF-----------------PDGILYASRESHYSVFKAARMYRM-EC 202 (470)
T ss_pred CCC--------CCeEEEeCcHHHHHHHHHHHHHhhc-----------------CCcEEEEcCCccHHHHHHHHhcCC-cc
Confidence 863 1489999999999999999999852 23479999999999999996 555 89
Q ss_pred EEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCC
Q psy11047 326 RYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFP 405 (943)
Q Consensus 326 ~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl 405 (943)
+.||+|++|+||+++|+++|.++. ..|++||+|+|||.+|+||||++|++ +|+++|+
T Consensus 203 ~~Vp~d~~g~mD~~aL~~aI~~d~---~~P~iVvataGTT~~GAiDpi~eIa~--------------------i~~~~g~ 259 (470)
T PLN02263 203 VKVDTLVSGEIDCADFKAKLLANK---DKPAIINVNIGTTVKGAVDDLDLVIK--------------------TLEECGF 259 (470)
T ss_pred eEeccCCCCcCcHHHHHHHHHhCC---CCcEEEEEEecCCCCcCCCCHHHHHH--------------------HHHHcCC
Confidence 999999999999999999998774 35999999999999999999999999 9999985
Q ss_pred CCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCC
Q psy11047 406 KFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSS 485 (943)
Q Consensus 406 ~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK 485 (943)
. .-++|+||||||||+ .+ |. ... .+.+.+.+.||||++||||
T Consensus 260 ~--~~~iwlHVDAA~GG~-~l--Pf--------------------------------~~~-~~~~df~~~vDSIsvD~HK 301 (470)
T PLN02263 260 S--QDRFYIHCDGALFGL-MM--PF--------------------------------VKR-APKVTFKKPIGSVSVSGHK 301 (470)
T ss_pred c--cCCeeEEEeccchhh-Hh--hh--------------------------------ccc-ccccCCCcCccEEEECCcc
Confidence 1 123599999999998 32 21 111 1234455679999999999
Q ss_pred ccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11047 486 LLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF-RALKLWFVIRNFGIKGLQKHIREIFSG 555 (943)
Q Consensus 486 ~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf-rALklW~tLr~~G~~Gl~~~I~~~l~~ 555 (943)
|++ +|++ ..+++..+++||... +.++++||++ +++++|++|+.+|.+||++++++
T Consensus 302 ~l~~P~~cgvll~R~~--~~~~~~~~~~Yl~~~---------d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~---- 366 (470)
T PLN02263 302 FVGCPMPCGVQITRME--HINVLSSNVEYLASR---------DATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQK---- 366 (470)
T ss_pred ccCCCcCEEEEEEehh--hHhhhccChHhhCCC---------CCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHH----
Confidence 999 5543 235677889999753 3578999997 68999999999999999999999
Q ss_pred CCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEe
Q psy11047 556 LALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRL 635 (943)
Q Consensus 556 ~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~ 635 (943)
++++|+++++.|++. +++++.+|..++|+|+-
T Consensus 367 -----------------------------------------------~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f~~ 398 (470)
T PLN02263 367 -----------------------------------------------CLRNAHYLKDRLREA-GISAMLNELSSTVVFER 398 (470)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHhC-CCeEEeCCCceEEEEec
Confidence 467899999999988 67777889999999985
Q ss_pred cCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 636 LGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 636 ~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
+.. . +..+|| +++. .+..+|+++.|+++.+.|++|++.|++......
T Consensus 399 p~~-----~----~~~~gW-~L~~----~~~~~Hivvmphv~~~~id~fi~DL~~~~~~~~ 445 (470)
T PLN02263 399 PKD-----E----EFVRRW-QLAC----QGNIAHVVVMPSVTIEKLDYFLKELVEKRSTWY 445 (470)
T ss_pred Cch-----H----Hhhcce-EEcc----CCCcEEEEEcCCCCHHHHHHHHHHHHHHHhhhh
Confidence 421 1 124676 4443 224699999999999999999999988766443
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-52 Score=473.32 Aligned_cols=391 Identities=14% Similarity=0.124 Sum_probs=321.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHH
Q psy11047 162 ESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLG 241 (943)
Q Consensus 162 ~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa 241 (943)
..+|++|.+.+++++++...+.. .+..||+|++|++++..+. +.+++..++|+|.++|..+|.++++|.++++|++
T Consensus 15 ~~~p~~~~~~~~~~~~~~~~iyl--d~~a~~~~~~~~tt~~~p~--~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la 90 (431)
T TIGR01788 15 YRMPEEEMPPDAAYQLIHDELSL--DGNPRLNLATFVTTWMEPE--ARKLMDETINKNMIDKDEYPQTAEIENRCVNMLA 90 (431)
T ss_pred ccCCCCCCCHHHHHHHHHHHhhh--cCCcceeeeeeeCCCCCHH--HHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHH
Confidence 48999999999999999987643 4556899999998876543 6899999999998999999999999999999999
Q ss_pred HHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-H
Q psy11047 242 KMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-I 320 (943)
Q Consensus 242 ~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-L 320 (943)
+|+|+++. ....+|++||||||||++||++||++...+.+. .|. . ..+++||+|+++|+|+.|++. +
T Consensus 91 ~llg~~~~------~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~--~g~---~-~~~~~ii~s~~~H~sv~ka~~~l 158 (431)
T TIGR01788 91 DLWHAPAK------DAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEA--AGK---P-TDKPNLVMGSNVQVCWEKFARYF 158 (431)
T ss_pred HHhCCCCC------CCCCeEEEechHHHHHHHHHHHHHHHHHHHHHh--cCC---C-CCCcEEEEcCcchHHHHHHHHHc
Confidence 99999821 001578999999999999999998754322111 111 0 134689999999999999995 5
Q ss_pred CCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHH
Q psy11047 321 GLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNF 399 (943)
Q Consensus 321 G~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~i 399 (943)
| .+++.||+|++ ++||+++|+++|+++ +++|++|+|||++|++||+++|++ +
T Consensus 159 g-~~v~~i~~d~~~~~vd~~~L~~~i~~~------t~lV~~t~g~t~tG~idpi~~I~~--------------------i 211 (431)
T TIGR01788 159 D-VELREVPMDPGRYVIDPEQVVEAVDEN------TIGVVCILGTTYTGEYEDVKALND--------------------A 211 (431)
T ss_pred C-ceeEEEecCCCceeeCHHHHHHHHhhC------CeEEEEEeCCCCCcccCCHHHHHH--------------------H
Confidence 6 48999999876 599999999999876 789999999999999999999999 9
Q ss_pred HHHc------CCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC
Q psy11047 400 ILSY------FPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL 473 (943)
Q Consensus 400 ar~~------Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi 473 (943)
|+++ |+ |+||||||||+ .+ |. .+++.+..+. +
T Consensus 212 ~~~~~~~~~~~~-------~~HvDaaq~g~-~~--p~-------------------------------~~~~~~~~~~-~ 249 (431)
T TIGR01788 212 LDEYNAKTGWDI-------PIHVDAASGGF-IA--PF-------------------------------VYPDLEWDFR-L 249 (431)
T ss_pred HHHHHhhhCCCc-------eEEEecccHHH-HH--HH-------------------------------hCCCchhhcC-C
Confidence 9999 89 99999999987 32 11 1233333343 6
Q ss_pred CCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCc-chHHHHHHHHHHHHH
Q psy11047 474 GRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF-RALKLWFVIRNFGIK 543 (943)
Q Consensus 474 e~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf-rALklW~tLr~~G~~ 543 (943)
++|||+++|+|||++ +|++..+...+...++|+... ..++++++||++ +++++|+.|+.+|..
T Consensus 250 ~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~-------~~~~t~~~sR~g~~al~~w~~l~~lG~~ 322 (431)
T TIGR01788 250 PRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGD-------EPTFTLNFSRPANQVIAQYYNFLRLGRE 322 (431)
T ss_pred CCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCC-------CCCcceecCchHHHHHHHHHHHHHhcHH
Confidence 789999999999995 566655555667778898532 224689999996 889999999999999
Q ss_pred HHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEe
Q psy11047 544 GLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIP 623 (943)
Q Consensus 544 Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl 623 (943)
||++++++ .+++|++|++.|++.|+|+++
T Consensus 323 G~~~i~~~---------------------------------------------------~~~la~~l~~~L~~~~~~el~ 351 (431)
T TIGR01788 323 GYRKIMQN---------------------------------------------------SLDVARYLAEEIAKLGPFEII 351 (431)
T ss_pred HHHHHHHH---------------------------------------------------HHHHHHHHHHHHHhCCCEEEe
Confidence 99999999 467899999999999999999
Q ss_pred cC-CCccEEEEEecCC---ChHHHHHHHHHhccCcEE---EeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 624 AA-RHLGMVVIRLLGE---NILTEKLLKRLNSKGRLH---CVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 624 ~~-~~l~iV~Fr~~g~---n~l~~~Ll~~L~~~G~~~---~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
.+ +.+++||||+++. +..+..+.++|+++|+.+ .+|+.+++..++|+++.++++.+.++++++.|+.+...+
T Consensus 352 ~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 352 SDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred eCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 97 7999999999863 234688999999999864 456668889999998899999999999999999987654
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=410.03 Aligned_cols=352 Identities=16% Similarity=0.188 Sum_probs=276.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCCh---hHHHHHHHHHHHHHHHhCCC
Q psy11047 171 WDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSP---ACTELEIITMNWLGKMIGLP 247 (943)
Q Consensus 171 ~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SP---aateLE~~Vi~wLa~LlG~p 247 (943)
..++++.+.+.+. -++..|.||......-++.+..|+....|+.++.+...+ .+.++|.++++|+++|+|++
T Consensus 8 ~~~~~~~~~~~~~-----~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~ 82 (374)
T PLN03032 8 MADILASYDKLLA-----EKSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELE 82 (374)
T ss_pred HHHHHHHHHHHHH-----HhhhhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCC
Confidence 4566666666554 257789999988876667898898887777666666544 68999999999999999998
Q ss_pred ccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEE
Q psy11047 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMR 326 (943)
Q Consensus 248 ~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~ 326 (943)
++ ..+|+|||||||||++||++||++. ++.++|+|+.+|+|+.||+. +|. .++
T Consensus 83 ~~--------~~~G~fTsGGTEaNl~al~~ar~~~-----------------~~~~vi~s~~~H~Sv~kaa~~lg~-~~~ 136 (374)
T PLN03032 83 KD--------EYWGYITTCGTEGNLHGILVGREVF-----------------PDGILYASRESHYSVFKAARMYRM-EAV 136 (374)
T ss_pred Cc--------cCCEEEeCchHHHHHHHHHHHHHhC-----------------CCcEEEeCCCceeHHHHHHHHcCC-CCe
Confidence 64 1479999999999999999998641 11368999999999999995 554 578
Q ss_pred EEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCC
Q psy11047 327 YIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPK 406 (943)
Q Consensus 327 ~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~ 406 (943)
.||+|.+|+||+++|+++|+++. ..|++|++++|||++|++||+++|++ +|++||+.
T Consensus 137 ~V~~d~~g~id~~~L~~~i~~~~---~~~~lvv~tagtt~tG~idpi~eI~~--------------------i~~~~g~~ 193 (374)
T PLN03032 137 KVPTLPSGEIDYDDLERALAKNR---DKPAILNVNIGTTVKGAVDDLDRILR--------------------ILKELGYT 193 (374)
T ss_pred EeeeCCCCcCcHHHHHHHHHHcC---CCCEEEEEEecCcCCccCCCHHHHHH--------------------HHHHhCCC
Confidence 99999999999999999998753 24899999999999999999999999 99999741
Q ss_pred CCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCc
Q psy11047 407 FQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSL 486 (943)
Q Consensus 407 ~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~ 486 (943)
...+|+||||||||+ .. |... ..+.+ +....+|||++|+|||
T Consensus 194 --~~~~~lHvDaA~gg~-~~--p~~~-----------------------------~~~~~----~~~~~vDSis~s~HK~ 235 (374)
T PLN03032 194 --EDRFYIHCDGALFGL-MM--PFVS-----------------------------RAPEV----TFRKPIGSVSVSGHKF 235 (374)
T ss_pred --CCCeeEEEEccchhh-hh--hccC-----------------------------CCccc----CCCcCCcEEEECcccc
Confidence 113399999999987 22 1100 01222 2234699999999999
Q ss_pred cC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy11047 487 LR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKHIREIFSGL 556 (943)
Q Consensus 487 L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~I~~~l~~~ 556 (943)
++ +|++ +...+...++||... ++|++|||+ ++++++|++|+.+|.+||+++++++
T Consensus 236 ~g~P~g~G~ll~r~~--~~~~~~~~~~Yl~~~---------d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~---- 300 (374)
T PLN03032 236 LGCPMPCGVALTRKK--HVKALSQNVEYLNSR---------DATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHC---- 300 (374)
T ss_pred cCCCcCeEEEEEEch--hhHhhccCCcccCCC---------CCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHH----
Confidence 99 3432 224566678898642 468999997 7899999999999999999999994
Q ss_pred CCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEec
Q psy11047 557 ALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLL 636 (943)
Q Consensus 557 ~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~ 636 (943)
+++|+++++.|++. +++++.+|.+++|+|+-+
T Consensus 301 -----------------------------------------------~~~a~~l~~~l~~~-~~~~~~~p~~~~V~f~~~ 332 (374)
T PLN03032 301 -----------------------------------------------MRNAHYLKDRLTEA-GLTCRLNELSSTVVFERP 332 (374)
T ss_pred -----------------------------------------------HHHHHHHHHHHHhC-CCcEEECCCceEEEEcCC
Confidence 56899999999885 888888999999999976
Q ss_pred CCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 637 GENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 637 g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
.. .. +. +|| +++. . +..+|+++.+++|.+.|++|++.|++.
T Consensus 333 ~~----~~----~~-~~w-~l~~--~--~~~~hi~vm~~~~~~~id~fi~dl~~~ 373 (374)
T PLN03032 333 MD----EA----FI-KKW-QLAC--E--GDIAHVVVMPNVTVEKLDEFVEELVEV 373 (374)
T ss_pred Cc----Hh----Hh-hee-eecc--c--CCEEEEEECCCCCHHHHHHHHHHHhcc
Confidence 31 11 22 465 4443 1 248999888999999999999988753
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=395.19 Aligned_cols=345 Identities=19% Similarity=0.196 Sum_probs=271.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCceeEEccCCCCh-HHHHHHHHHHHHhccCccccCCh----hHHHHHHHHHHHHHHHhCC
Q psy11047 172 DTIMGDIEKVIMPGITHWQSPYMHAYFPALNSY-PSLLGDMLSDAINCLGFTWASSP----ACTELEIITMNWLGKMIGL 246 (943)
Q Consensus 172 e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~-~silgd~L~~alN~n~~~~~~SP----aateLE~~Vi~wLa~LlG~ 246 (943)
.+.|+.+...+. +||+++.+++...++ ++.+++++....|+.+ .|..++ .+.++|.++++|+|+|+|+
T Consensus 8 ~~~~~~~~~~~~------~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~g-np~~~~~~g~~~~~~e~~~~~~~a~l~g~ 80 (380)
T PRK02769 8 QKEIEDFWLYLR------HNQYFNVGYPEAADFDYSALKRFFSFSINNCG-DPYSKSNYPLNSFDFERDVMNFFAELFKI 80 (380)
T ss_pred HHHHHHHHHHHH------HhhhcccCCCchhhcCHHHHHHHHHhhhccCC-CccccCCCCCChHHHHHHHHHHHHHHhCC
Confidence 455666665543 678887777666665 6889999999888655 455555 4899999999999999999
Q ss_pred CccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccE
Q psy11047 247 PEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNM 325 (943)
Q Consensus 247 p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v 325 (943)
+++. .+|+||+||||||++|+++||++. + ..+||+|+.+|+|+.|++. +|. ..
T Consensus 81 ~~~~--------~~G~~TsGgTean~~a~~~ar~~~--------~---------~~~ii~s~~~H~Sv~ka~~~lg~-~~ 134 (380)
T PRK02769 81 PFNE--------SWGYITNGGTEGNLYGCYLARELF--------P---------DGTLYYSKDTHYSVSKIARLLRI-KS 134 (380)
T ss_pred CCCC--------CCEEEecChHHHHHHHHHHHHHhC--------C---------CcEEEeCCCceehHHHHHHHcCC-CC
Confidence 8541 479999999999999999998741 1 2469999999999999995 554 56
Q ss_pred EEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcC-
Q psy11047 326 RYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYF- 404 (943)
Q Consensus 326 ~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~G- 404 (943)
+.|+++++|+||+++|+++|+++ |..|.+|++++|||.+|++||+++|++ +|++||
T Consensus 135 ~~V~~~~~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idpi~~I~~--------------------i~~~~g~ 191 (380)
T PRK02769 135 RVITSLPNGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDNIKEIQE--------------------ILKKIGI 191 (380)
T ss_pred ceeccCCCCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCCHHHHHH--------------------HHHHhCC
Confidence 78898899999999999999876 556999999999999999999999999 999998
Q ss_pred --CCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEc
Q psy11047 405 --PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIV 482 (943)
Q Consensus 405 --l~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiD 482 (943)
+ |+|||||+||+ .+ |. .. ....++..+.+|||++|
T Consensus 192 ~~~-------~lHVDaA~gg~-~~--p~--------------------------------~~-~~~~~d~~~~vDsis~s 228 (380)
T PRK02769 192 DDY-------YIHADAALSGM-IL--PF--------------------------------VN-NPPPFSFADGIDSIAIS 228 (380)
T ss_pred Cce-------EEEEEecccce-ee--cc--------------------------------cC-ccccCCccCCCCEEEEC
Confidence 7 99999999987 22 21 00 01123333478999999
Q ss_pred CCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 483 PSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKHIREI 552 (943)
Q Consensus 483 pHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~I~~~ 552 (943)
+|||++ +|++ .+ ..+...+.|+.. .+++++|||+ ++++++|++|+.+|.+||++.++++
T Consensus 229 ~HK~~~~P~g~G~l~~r~~-~~-~~~~~~~~yl~~---------~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~ 297 (380)
T PRK02769 229 GHKFIGSPMPCGIVLAKKK-YV-ERISVDVDYIGS---------RDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHC 297 (380)
T ss_pred CcccCCCCCCcEEEEEehh-hh-hhcccCccccCC---------CCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 999998 3332 22 223345566642 2468899997 6899999999999999999999983
Q ss_pred HhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEE
Q psy11047 553 FSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVV 632 (943)
Q Consensus 553 l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~ 632 (943)
.++|+++.+.|++ .+++++.+|.+++|+
T Consensus 298 ---------------------------------------------------~~la~~l~~~L~~-~g~~~~~~p~~~~v~ 325 (380)
T PRK02769 298 ---------------------------------------------------LDMAQYAVDRLQA-NGIPAWRNPNSITVV 325 (380)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHh-CCCEEEcCCCceEEE
Confidence 5688999998877 489999999999999
Q ss_pred EEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 633 IRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 633 Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
|+.+. ..+. +|| ++++. +..+|+++.+++|.++|+.+++++...-.
T Consensus 326 f~~~~-----~~~~-----~~w-~l~~~----~~~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 326 FPCPS-----ERIW-----KKW-HLATS----GNQAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred EcCCC-----HHHH-----hCe-eEccc----CCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 98653 2221 555 44432 24899999999999999999988877644
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=339.61 Aligned_cols=340 Identities=31% Similarity=0.419 Sum_probs=275.6
Q ss_pred eeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHH
Q psy11047 194 MHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLI 273 (943)
Q Consensus 194 f~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~ 273 (943)
|+++++++++++++++++++..+|++...|..+|.++++|.++++|+++++|++.. ...++||+|||+||++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~--------~~~~~~t~ggt~a~~~ 72 (345)
T cd06450 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSE--------DADGVFTSGGSESNLL 72 (345)
T ss_pred CcccccCCCcHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCC--------CCCEEEeCChhHHHHH
Confidence 67888888999999999999999999999999999999999999999999999722 1479999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCC
Q psy11047 274 CLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHL 353 (943)
Q Consensus 274 AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~ 353 (943)
++.+++.+..++.+.. +. ...++.+|++|+.+|+|+.+++.+.+.+++.|++++++.+|+++|+++|.++..+|.
T Consensus 73 al~~~~~~~~~~~~~~--~~---~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~ 147 (345)
T cd06450 73 ALLAARDRARKRLKAG--GG---RGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGL 147 (345)
T ss_pred HHHHHHHHhhhhhhcc--cc---cccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999987543322110 00 001346899999999999999864455899999998899999999999998777777
Q ss_pred CcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccc
Q psy11047 354 IPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 433 (943)
Q Consensus 354 ~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~ 433 (943)
.+.+|+++.+++.+|.++|+++|++ +|++||+ |+|+|+||+++ .+ +
T Consensus 148 ~~~~v~~~~~~~~tG~~~~~~~i~~--------------------~~~~~~~-------~l~vD~a~~~~-~~--~---- 193 (345)
T cd06450 148 NPIMVVATAGTTDTGAIDPLEEIAD--------------------LAEKYDL-------WLHVDAAYGGF-LL--P---- 193 (345)
T ss_pred CcEEEEEecccCCCCCCCCHHHHHH--------------------HHHHhCC-------eEEEechhhHH-Hh--h----
Confidence 7889999999999999999999999 9999999 99999999876 22 0
Q ss_pred cceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCc
Q psy11047 434 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGL 513 (943)
Q Consensus 434 Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~ 513 (943)
.........+++.+|++++++|||++..-+.-+ -|+
T Consensus 194 -----------------------------~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~--------~~~------- 229 (345)
T cd06450 194 -----------------------------FPEPRHLDFGIERVDSISVDPHKYGLVPLGCSA--------VLV------- 229 (345)
T ss_pred -----------------------------ChhhHHHhcCccccCEEEEchhHhhCCCcchHH--------HHH-------
Confidence 111112233456799999999999884322111 011
Q ss_pred ccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCccc
Q psy11047 514 AIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNF 593 (943)
Q Consensus 514 ~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~ 593 (943)
| ++++|..++.+|..|+.+++++
T Consensus 230 ------------~---~~~~~~~l~~l~~~g~~~~~~~------------------------------------------ 252 (345)
T cd06450 230 ------------R---ALKLWATLRRFGRDGYGEHIDR------------------------------------------ 252 (345)
T ss_pred ------------H---HHHHHHHHHHHhHHHHHHHHHH------------------------------------------
Confidence 0 8899999999999999998888
Q ss_pred ccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCC---ChHHHHHHHHHhccCcEEEeecccCCCcEEEE
Q psy11047 594 ILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE---NILTEKLLKRLNSKGRLHCVPASLRIQGLGRA 670 (943)
Q Consensus 594 ~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~---n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~ 670 (943)
..++++++.+.|++.++++++.++..++++|++.+. +..+..+.++|.++|.+++.+..+.+..++|+
T Consensus 253 ---------~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRi 323 (345)
T cd06450 253 ---------IVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRF 323 (345)
T ss_pred ---------HHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEE
Confidence 356899999999999999999888999999999763 34467899999999887777665556779999
Q ss_pred eec-CCCCHHHHHHHHHHHHH
Q psy11047 671 QNF-TRTTNDDITRDWNEIRN 690 (943)
Q Consensus 671 v~~-~~tt~edId~ll~~I~~ 690 (943)
+++ +.+|.+||+++++.|++
T Consensus 324 s~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 324 VVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred EecCCCCCHHHHHHHHHHHHh
Confidence 655 55799999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >KOG1383|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=302.91 Aligned_cols=419 Identities=16% Similarity=0.163 Sum_probs=325.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhc-cCccccCChhHHHHHHHHHHHH
Q psy11047 162 ESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINC-LGFTWASSPACTELEIITMNWL 240 (943)
Q Consensus 162 ~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~-n~~~~~~SPaateLE~~Vi~wL 240 (943)
..+|+.|.+-+++++.+.+..+-... |.-.+--+-++... .-.-.++...+|- |....+..|..+++|.++++++
T Consensus 54 ~~lP~~gl~~d~v~~~i~~~~~ld~~-~~~~~vS~~v~~~~---~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~ 129 (491)
T KOG1383|consen 54 FTLPSKGLPKDAVLELINDELMLDGN-PRLGLASGVVYWGE---PELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMI 129 (491)
T ss_pred ecCCCCCCCHHHHHHHHHHHhccCCC-cccCeeeEEEecCC---cchhhHHHHHHhhcCccCccccchhHHHHHHHHHHH
Confidence 47899999999999999987665434 44444444333331 2233555555665 6677889999999999999999
Q ss_pred HHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH
Q psy11047 241 GKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI 320 (943)
Q Consensus 241 a~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L 320 (943)
+.||+.|+. ..|.-|+|||||.+.+....|+++... .|+ ..+.++++...|.+++|++..
T Consensus 130 ~~L~~~~~~---------~~g~~t~G~Ses~l~~~k~~~~~r~~~-----k~I------~~p~iv~~~~v~~a~eK~a~y 189 (491)
T KOG1383|consen 130 ANLFNAPSD---------SCGCGTVGGSESGLAAKKSYRNRRKAQ-----KGI------DKPNIVTPQNVHAAFEKAARY 189 (491)
T ss_pred HHHhcCCcc---------ccCccccccchHHHHHHHHHHHHHHhc-----cCC------CCccccchHHHHHHHHHHHhh
Confidence 999999854 589999999999888888888765431 232 345678899999999999976
Q ss_pred CCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHH
Q psy11047 321 GLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNF 399 (943)
Q Consensus 321 G~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~i 399 (943)
-...++.||++ .+.+||+..+.+.++++ +.+||+.+|++-+|.+||++++++ +
T Consensus 190 f~v~l~~V~~~~~~~~~D~~k~~~~i~eN------ti~lv~~~~~~p~G~~e~ve~l~~--------------------l 243 (491)
T KOG1383|consen 190 FEVELREVPLDEGDYRVDPGKVVRMIDEN------TIMLVGSLPNFPTGEIEDVEKLAD--------------------L 243 (491)
T ss_pred EEEEEEeeeccccceEecHHHHHHHhccc------eEEEEEEcCCCCccchhhHHHHHH--------------------H
Confidence 56699999998 79999999999999998 789999999999999999999999 7
Q ss_pred HHH-cCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeE
Q psy11047 400 ILS-YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQN 478 (943)
Q Consensus 400 ar~-~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADS 478 (943)
+.+ +++ .+|||||.||+ . +| ++ .....++... +.++-|
T Consensus 244 ~~e~w~i-------piHvDa~~GgF-i--~p----~~------------------------~~~~~~fdFr---~p~V~S 282 (491)
T KOG1383|consen 244 LLEIWDI-------PIHVDACLGGF-I--NP----AG------------------------YLNEEEFDFR---VPGVTS 282 (491)
T ss_pred HHHHhCC-------ceeecccCccc-c--cc----cc------------------------ccCccccccC---CCCcee
Confidence 666 999 99999999998 2 22 01 0011234443 456689
Q ss_pred EEEcCCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHH
Q psy11047 479 FTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKH 548 (943)
Q Consensus 479 ItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~ 548 (943)
|+.|+||+++ +|++..+...|-..+.|++. ++..+|+.+||+ +.....|++|..+|.+||.+.
T Consensus 283 isa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg-------~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~ 355 (491)
T KOG1383|consen 283 ISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGG-------IYASPTLNGSRPGSQVAAQWAALMSLGEEGYREN 355 (491)
T ss_pred EeeccceeeeeecCcEEEEEcccccccceEEEeccccCc-------cccCcccccCCcccHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999 68887776666667777653 466789999997 567899999999999999999
Q ss_pred HHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCc
Q psy11047 549 IREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHL 628 (943)
Q Consensus 549 I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l 628 (943)
.++| ++.++++++.|++++++.+..+|..
T Consensus 356 ~~~i---------------------------------------------------ve~~~~l~egie~i~~i~i~gkp~v 384 (491)
T KOG1383|consen 356 TQNI---------------------------------------------------VETARKLREGIENIKGIKIVGKPLV 384 (491)
T ss_pred HHHH---------------------------------------------------HHHHHHHHHhhhccccceecCCCcE
Confidence 9995 4568899999999999999999665
Q ss_pred cEEEEEecCCChHH-HHHHHHHhccCcEEEeecccCCCcEEEE-eecCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy11047 629 GMVVIRLLGENILT-EKLLKRLNSKGRLHCVPASLRIQGLGRA-QNFTRTTNDDITRDWNEIRNTATEILAELAEETQRV 706 (943)
Q Consensus 629 ~iV~Fr~~g~n~l~-~~Ll~~L~~~G~~~~s~t~~~g~~~lR~-v~~~~tt~edId~ll~~I~~~~~~ll~~~~~~~~~~ 706 (943)
.+++|. .+.++ .+|.+.|.+.||..-+ ++-+..+.+ ++--++.++-.++++..|+++.++|.+.
T Consensus 385 s~~~~~---s~~~~i~elsd~l~~~GW~lna---lq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~-------- 450 (491)
T KOG1383|consen 385 SFILFG---SNDVNIFELSDLLRKKGWILNA---LQFPAAIHICVTRVHAREDVADRFVADIRKVVEELKSL-------- 450 (491)
T ss_pred EEEEcc---CCccchhhhhHHHHhcCcCccc---cCCCCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHhC--------
Confidence 555554 44343 5788889999996544 233345555 4444455555899999999999998877
Q ss_pred cccccccccccccccccccccccccccCCCCccchhccchhhhcc
Q psy11047 707 QVTKRTRVPLKETKGRNALFGSSLLLANSPMSPKIMNGSFAAVFD 751 (943)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 751 (943)
|.+.|.+..+.||+..-.-...+++.++.++.+++|.
T Consensus 451 --------p~~~~~~~~a~yg~a~~~~~~~~~~e~~~~~~d~~y~ 487 (491)
T KOG1383|consen 451 --------PESKTHGMAAIYGLAQKTPDRSVVDELIVGFLDSVYT 487 (491)
T ss_pred --------CCcccCcccchhhhhhcCCchhhHHHHHHHHHHhhhc
Confidence 5566777799999766644577899999999999887
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=264.45 Aligned_cols=357 Identities=15% Similarity=0.141 Sum_probs=256.5
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCcc
Q psy11047 170 KWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEE 249 (943)
Q Consensus 170 ~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~ 249 (943)
+..++|+.+.+.-.++... . ||++.+.+.+. |.++ +.+...+..+.......|...+++.++.+++++++|++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~ 77 (371)
T PRK13520 3 SEEEILEELEEYRSEDLKY-E--RILSSMCTEPH-PIAR-KAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDA 77 (371)
T ss_pred CHHHHHHHHHHHHhcCCCH-H--HeeeeeecCch-HHHH-HHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCC
Confidence 4678888888776655433 3 68888777644 4444 4444455444333333466788889999999999999754
Q ss_pred ccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEe
Q psy11047 250 FLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIE 329 (943)
Q Consensus 250 fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp 329 (943)
.++||+|||+||+.++.+++.... .++..|++++.+|+|+.+++.+-+.+++.||
T Consensus 78 ----------~~~~~~ggt~a~~~a~~~~~~~~~---------------~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~ 132 (371)
T PRK13520 78 ----------YGYITSGGTEANIQAVRAARNLAK---------------AEKPNIVVPESAHFSFDKAADMLGVELRRAP 132 (371)
T ss_pred ----------CeEEecCcHHHHHHHHHHHHhhcc---------------CCCceEEecCcchHHHHHHHHHcCceEEEec
Confidence 589999999999999888764210 0123588899999999998854334889999
Q ss_pred cCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCc
Q psy11047 330 SDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQS 409 (943)
Q Consensus 330 ~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~ 409 (943)
++.++.+|+++|+++|+++ +.+|+.+.+++.+|.++|+++|++ +|+++|+
T Consensus 133 ~~~~~~~d~~~l~~~i~~~------~~~vi~~~~~~~tG~~~~l~~I~~--------------------l~~~~g~---- 182 (371)
T PRK13520 133 LDDDYRVDVKAVEDLIDDN------TIGIVGIAGTTELGQVDPIPELSK--------------------IALENGI---- 182 (371)
T ss_pred CCCCCcCCHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHH--------------------HHHHcCC----
Confidence 9888999999999999765 567788889999999999999999 9999999
Q ss_pred cchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC-
Q psy11047 410 VRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR- 488 (943)
Q Consensus 410 l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~- 488 (943)
|+|||+||+++ .+ +... ..+.+. + ....+|++++++|||++
T Consensus 183 ---~livD~a~~~~-~~--~~~~-----------------------------~~~~~~--~-~~~~vd~~~~s~~K~~~a 224 (371)
T PRK13520 183 ---FLHVDAAFGGF-VI--PFLD-----------------------------DPPNFD--F-SLPGVDSITIDPHKMGLA 224 (371)
T ss_pred ---CEEEEecchhH-HH--Hhhc-----------------------------CCCCcc--c-cCCCCceEEECCccccCc
Confidence 99999999876 21 1000 000011 0 12467999999999976
Q ss_pred --------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy11047 489 --------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKHIREIFSGLALP 559 (943)
Q Consensus 489 --------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~ 559 (943)
++++. +.+.+....+|+... ..+...++|. ..++.+|.++..++.+|+++.+++
T Consensus 225 ~~~~G~~~~~~~~-~~~~l~~~~~~~~~~--------~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~-------- 287 (371)
T PRK13520 225 PIPAGGILFRDES-YLDALAVDTPYLTSK--------KQATLTGTRSGAGVAATYAVMKYLGREGYRKVVER-------- 287 (371)
T ss_pred cCCceEEEEcCHH-HHHhhcccCccccCC--------CCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHH--------
Confidence 22222 212222223344321 1223345665 356789999999998998888777
Q ss_pred cccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCC
Q psy11047 560 AFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGEN 639 (943)
Q Consensus 560 ~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n 639 (943)
..++++++.+.|++. +++++.++..++++|.+++
T Consensus 288 -------------------------------------------~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~-- 321 (371)
T PRK13520 288 -------------------------------------------CMENTRWLAEELKER-GFEPVIEPVLNIVAFDDPN-- 321 (371)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhC-CCEEecCCCceEEEEecCC--
Confidence 356788888888877 8886667788999998862
Q ss_pred hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 640 ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 640 ~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
.+++.++|.++|.+ +... ....++|+++++.+|++||+++++.|+++.
T Consensus 322 --~~~v~~~L~~~gi~-v~~~--~~~~~iRis~~~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 322 --PDEVREKLRERGWR-VSVT--RCPEALRIVCMPHVTREHIENFLEDLKEVK 369 (371)
T ss_pred --HHHHHHHHHHCCce-eccC--CCCCEEEEEEECCCCHHHHHHHHHHHHHHh
Confidence 46788888888853 4432 335689998888999999999999998764
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=253.89 Aligned_cols=361 Identities=17% Similarity=0.166 Sum_probs=253.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccc
Q psy11047 171 WDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEF 250 (943)
Q Consensus 171 ~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~f 250 (943)
.+++++++.+ +..++++.+++|+++.+...+.++. .. .+..++..+.......|....++..+.+++++++|+++.
T Consensus 2 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~- 77 (373)
T TIGR03812 2 EEEVLEELKE-YRSEDLKYSDGRILGSMCTNPHPIA-VK-AYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDA- 77 (373)
T ss_pred HHHHHHHHHH-HHhcCCCCCCCcEEEEEeCCchHHH-HH-HHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCC-
Confidence 4688999988 4567777799999988887655443 22 222333333222233466788899999999999999764
Q ss_pred cccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEec
Q psy11047 251 LHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIES 330 (943)
Q Consensus 251 l~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~ 330 (943)
.+++++|||++|+.++.+++..... + .+...|++++.+|+++.+++...+.+++.+++
T Consensus 78 ---------~~~~~~g~~~~~~~~~~~~~~~~~~-------~------~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~ 135 (373)
T TIGR03812 78 ---------YGYIVSGGTEANIQAVRAAKNLARE-------E------KRTPNIIVPESAHFSFEKAAEMLGLELRYAPL 135 (373)
T ss_pred ---------CeEEeccHHHHHHHHHHHHHHHHhc-------c------CCCcEEEECCcchHHHHHHHHHcCCeEEEEee
Confidence 6889999999999888766542110 0 01235788999999999988644458899999
Q ss_pred CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCcc
Q psy11047 331 DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSV 410 (943)
Q Consensus 331 D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l 410 (943)
+.++.+|+++|+++++++ +..++.+.+++.+|.++|+++|.+ +|+++|+
T Consensus 136 ~~~~~~d~~~l~~~l~~~------~~~vv~~~~~~~tG~~~~~~~i~~--------------------l~~~~~~----- 184 (373)
T TIGR03812 136 DEDYTVDVKDVEDLIDDN------TIGIVGIAGTTELGQIDDIEELSK--------------------IALENGI----- 184 (373)
T ss_pred CCCCCcCHHHHHHHHhhC------cEEEEEECCCCCCCccCCHHHHHH--------------------HHHHcCC-----
Confidence 889999999999999764 345566668999999999999999 9999999
Q ss_pred chhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC--
Q psy11047 411 RLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR-- 488 (943)
Q Consensus 411 ~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-- 488 (943)
|+|||+||+++ .+ +.. + .|. -.+.... ....+|++++++|||++
T Consensus 185 --~livD~a~~~~-~~--~~~------------------------~-~~~-~~~~~d~---~~~~~d~~~~s~~K~~~~~ 230 (373)
T TIGR03812 185 --YLHVDAAFGGF-VI--PFL------------------------K-KGY-NPPPFDF---SLPGVQSITIDPHKMGLSP 230 (373)
T ss_pred --eEEEEcCchhH-HH--HHH------------------------h-cCC-CCCCccc---cCCCCCEEEECccccCCCc
Confidence 99999999876 21 100 0 000 0001111 12357999999999875
Q ss_pred -------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy11047 489 -------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKHIREIFSGLALPA 560 (943)
Q Consensus 489 -------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~ 560 (943)
++++..+ +.+....+|+... ..+...|+|. ...+.+|..++.++..|+.+.+++
T Consensus 231 ~~~G~~~~~~~~~~-~~l~~~~~~~~~~--------~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~--------- 292 (373)
T TIGR03812 231 IPAGGILFRSKSYL-KYLSVDAPYLTVK--------KQATITGTRSGASAAATYAVIKYLGREGYRKIVAE--------- 292 (373)
T ss_pred CCceEEEEeCHHHH-hhhcccCcccCCC--------CCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHH---------
Confidence 1222221 2222223343221 1233456775 456788999999998998888877
Q ss_pred ccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCCh
Q psy11047 561 FLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENI 640 (943)
Q Consensus 561 ~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~ 640 (943)
..++++++.+.|++. +++.+.++..++|+|++++
T Consensus 293 ------------------------------------------~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~--- 326 (373)
T TIGR03812 293 ------------------------------------------CMENTRYLVEELKKI-GFEPVIEPVLNIVAFEVDD--- 326 (373)
T ss_pred ------------------------------------------HHHHHHHHHHHHHhC-CCeEEcCCCceEEEEEeCC---
Confidence 356788888888887 4555556788999999864
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRN 690 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~ 690 (943)
...+.++|.++|. +++.. .+..++|+++++++|++|++++++.|++
T Consensus 327 -~~~v~~~L~~~gi-~v~~~--~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 327 -PEEVRKKLRDRGW-YVSVT--RCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred -HHHHHHHHHHCCc-eeccC--CCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 2478888888875 44432 2456899998899999999999999875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=251.44 Aligned_cols=347 Identities=16% Similarity=0.071 Sum_probs=253.8
Q ss_pred eeEEccCCCChHHHHHHHHHHH----HhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHH
Q psy11047 194 MHAYFPALNSYPSLLGDMLSDA----INCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASE 269 (943)
Q Consensus 194 f~g~~~~~~s~~silgd~L~~a----lN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTe 269 (943)
|+.|--+.+..|.++..|+..+ .|++. .+..+-.+..+-.++++++|+++|.++. ..+|||||||
T Consensus 4 YlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~----------eIiFTSG~TE 72 (386)
T COG1104 4 YLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPE----------EIIFTSGATE 72 (386)
T ss_pred cccccccCCCCHHHHHHHHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCC----------eEEEecCCcH
Confidence 4555555555666665554432 36655 5666666777777899999999999874 7899999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH-HH--CCccEEEEecCCCCCcCHHHHHHHHH
Q psy11047 270 STLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG-LI--GLVNMRYIESDDKLSLRGDKLIEAIE 346 (943)
Q Consensus 270 ANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa-~L--G~~~v~~Vp~D~~grmD~daLe~aI~ 346 (943)
||++|+..+-..... + ..+-.|++|..+|.|+..++ ++ .+..|.++|+|.+|++|+++|+++|+
T Consensus 73 snNlaI~g~~~a~~~------~-------~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~ 139 (386)
T COG1104 73 SNNLAIKGAALAYRN------A-------QKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALR 139 (386)
T ss_pred HHHHHHHhhHHhhhc------c-------cCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcC
Confidence 999999875332111 0 02236899999999999988 56 34489999999999999999999999
Q ss_pred HhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcc
Q psy11047 347 RDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 426 (943)
Q Consensus 347 ~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~af 426 (943)
.+ +.+|+..+.++++|.+.||++|++ +|+++|+ ++|+||+++.+ ..
T Consensus 140 ~~------T~LVSim~aNnE~G~IQpI~ei~~--------------------i~k~~~i-------~fHvDAvQa~G-ki 185 (386)
T COG1104 140 PD------TILVSIMHANNETGTIQPIAEIGE--------------------ICKERGI-------LFHVDAVQAVG-KI 185 (386)
T ss_pred CC------ceEEEEEecccCeeecccHHHHHH--------------------HHHHcCC-------eEEEehhhhcC-ce
Confidence 87 789999999999999999999999 9999999 99999999876 32
Q ss_pred ccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCcccc
Q psy11047 427 EIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYL 506 (943)
Q Consensus 427 eLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL 506 (943)
|-+ .. . -.+|.+++++||+++.|.-+.|.-.-......+
T Consensus 186 --pi~-------------------------------~~-------~-~~vD~ls~SaHK~~GpkGiGaLyv~~~~~~~p~ 224 (386)
T COG1104 186 --PID-------------------------------LE-------E-LGVDLLSFSAHKFGGPKGIGALYVRPGVRLEPL 224 (386)
T ss_pred --ecc-------------------------------cc-------c-cCcceEEeehhhccCCCceEEEEECCCCccCce
Confidence 211 11 1 138999999999999776655411000111111
Q ss_pred ccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccc
Q psy11047 507 RHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKL 586 (943)
Q Consensus 507 ~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~ 586 (943)
.+++ +.|.++|.. |.+..|+.|+++.++...+.+. . .+.+
T Consensus 225 i~GG----------gQE~g~RsG------Tenv~~Ivg~~~A~~~a~~~~~----------------~-----~~~~--- 264 (386)
T COG1104 225 IHGG----------GQERGLRSG------TENVPGIVGFGKAAEIAVEELE----------------E-----ENAR--- 264 (386)
T ss_pred eccC----------cCCCCCCCC------CccHHHHHHHHHHHHHHHHHHH----------------H-----HHHH---
Confidence 1111 224555554 6788899999999998654321 0 0000
Q ss_pred cCCCcccccccCCcHHHHHHHHHHHHHHhCC-CCeEEecCC---CccEEEEEecCCChHHHHHHHHHhccCcEEEeec--
Q psy11047 587 QTNFPNFILSYFPKFQSVRLAQKFEALVLGD-PRFEIPAAR---HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA-- 660 (943)
Q Consensus 587 ~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~-p~~eIl~~~---~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t-- 660 (943)
...|.++|.+.|++. |++.+...+ -.|+++|.+++.. .+.|+-.|...|. +++..
T Consensus 265 ----------------~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~--gE~ll~~L~~~gI-~vStGSA 325 (386)
T COG1104 265 ----------------LRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVE--GESLLLALDLAGI-AVSTGSA 325 (386)
T ss_pred ----------------HHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCc--HHHHHHhccccCe-EEecccc
Confidence 357888999998865 999998643 5899999999865 5888888988885 44321
Q ss_pred ----cc--------------CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 661 ----SL--------------RIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 661 ----~~--------------~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
.+ .-++.+||+++.+||++||+++++.++++.+.+...
T Consensus 326 CsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~ 381 (386)
T COG1104 326 CSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLREL 381 (386)
T ss_pred ccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 11 125799999999999999999999999998887653
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=238.21 Aligned_cols=344 Identities=16% Similarity=0.102 Sum_probs=245.6
Q ss_pred hHHHHHHHHHHHH---hcc--CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHH-HHHHHHH
Q psy11047 204 YPSLLGDMLSDAI---NCL--GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASES-TLICLLA 277 (943)
Q Consensus 204 ~~silgd~L~~al---N~n--~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeA-NL~AL~a 277 (943)
.|..+.+.+..++ |.| ...+..+..++.++.++++.+++++|.++. ...+||+|.|+| |+.+...
T Consensus 34 ~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~---------~eIvft~~tT~aln~va~~l 104 (405)
T COG0520 34 KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSS---------DEIVFTRGTTEALNLVARGL 104 (405)
T ss_pred CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCC---------CeEEEeCChhHHHHHHHHHh
Confidence 4555666666553 333 345566777888999999999999999852 378999999999 4444433
Q ss_pred HHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCC
Q psy11047 278 GRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHL 353 (943)
Q Consensus 278 AR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~ 353 (943)
++. + .+| ..|++|+..|+|..-.. .-.+..++.+|++++|.++.+++++.|.+.
T Consensus 105 ~~~--~------~~g---------deIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~----- 162 (405)
T COG0520 105 GRS--L------KPG---------DEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPK----- 162 (405)
T ss_pred hhh--h------cCC---------CEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCC-----
Confidence 332 1 122 35888999999965554 223448999999999999999999977765
Q ss_pred CcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccc
Q psy11047 354 IPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 433 (943)
Q Consensus 354 ~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~ 433 (943)
+.+|+.++.++.+|.+.|+++|++ +|+++|. |+-||||++.. .. |.+
T Consensus 163 -Tklvais~vSn~tG~~~pv~~I~~--------------------la~~~ga-------~v~VDaaq~~~-h~--~id-- 209 (405)
T COG0520 163 -TKLVALSHVSNVTGTVNPVKEIAE--------------------LAHEHGA-------LVLVDAAQAAG-HL--PID-- 209 (405)
T ss_pred -ceEEEEECccccccccchHHHHHH--------------------HHHHcCC-------EEEEECccccC-cc--CCC--
Confidence 789999999999999999999999 9999999 99999999876 33 111
Q ss_pred cceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCcc-Ccchh---hhhcccCccccccC
Q psy11047 434 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVK-NSGAL---HRTFNVEPLYLRHE 509 (943)
Q Consensus 434 Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr-~~~~L---~~af~~~p~YL~~~ 509 (943)
++. -.+|.+.+++|||++-+ .-+.| .+.+....++...+
T Consensus 210 ------------------------------------v~~-l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg 252 (405)
T COG0520 210 ------------------------------------VQE-LGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGG 252 (405)
T ss_pred ------------------------------------chh-cCCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCC
Confidence 111 26899999999988722 11111 01111123344333
Q ss_pred CCCccccc-Ccccc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccccccccccc
Q psy11047 510 NSGLAIDY-MHWQI-PLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 587 (943)
Q Consensus 510 ~~g~~~d~-~~~ti-e~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~ 587 (943)
+.....+. ...++ +..+||.+. +.+..|.-|+.+.++.+.+ .|...|.++
T Consensus 253 ~~~~~~~~~~~~~~~~~p~rfe~g----Tpn~~~~i~l~aAl~~~~~---------------ig~~~i~~~--------- 304 (405)
T COG0520 253 GMIEYVSRDEGVTLAELPLRFEAG----TPNIAGAIGLAAALDYLLE---------------IGMEAIEAH--------- 304 (405)
T ss_pred CceeeecccccccccCcchhhccC----CchHHHHHhHHHHHHHHHH---------------HhHHHHHHH---------
Confidence 22111222 12333 456777764 7888888889999888643 344444443
Q ss_pred CCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC---CccEEEEEecCCChHHHHHHHHHhccCcEEEee--c--
Q psy11047 588 TNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR---HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP--A-- 660 (943)
Q Consensus 588 ~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~---~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~--t-- 660 (943)
..+|++++.+.|.++|+++++.++ ..++++|++++.+ +..+...|..+|...-+. +
T Consensus 305 ---------------e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~--~~dv~~~L~~~gI~vr~g~~ca~ 367 (405)
T COG0520 305 ---------------ERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIH--PHDVATLLDEKGIAVRAGHHCAQ 367 (405)
T ss_pred ---------------HHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCC--HHHHHHHHHhCCeEEEecccccc
Confidence 478999999999999999999875 6999999999874 688999999988322221 1
Q ss_pred ----ccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 661 ----SLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 661 ----~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
.+.-...+|++++.++|++||+++++.|+++.+
T Consensus 368 p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 368 PLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred HHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 011134599999999999999999999998754
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=248.78 Aligned_cols=378 Identities=13% Similarity=0.064 Sum_probs=252.9
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChh-----HHHHHHHHHHHHHHHh
Q psy11047 170 KWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPA-----CTELEIITMNWLGKMI 244 (943)
Q Consensus 170 ~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPa-----ateLE~~Vi~wLa~Ll 244 (943)
+-.++++.+.++-.....-..+..++|+ ......| .+++.....+.....+-..|. ..+++.+..+|+++++
T Consensus 479 sE~e~~r~~~~l~~kn~~~~~~~i~lGs-ct~~~~p--~~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~elt 555 (954)
T PRK05367 479 SETEMMRYLRRLEDKDLALDRSMIPLGS-CTMKLNA--AAEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEIT 555 (954)
T ss_pred CHHHHHHHHHHHHhcCcCcccceeeCCc-CCCcCCH--HHHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668888888765444332334455777 2222222 334444444444333444554 7899999999999999
Q ss_pred CCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCcc
Q psy11047 245 GLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVN 324 (943)
Q Consensus 245 G~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~ 324 (943)
|++. ......||+++|+.+|+++|.+... +|- ..+.+|++|+.+|+|+.+++.+-+.+
T Consensus 556 G~d~-----------~sl~~~~ga~ge~agL~a~r~~~~~------~G~-----~~r~~vlis~~aH~snp~sa~~~G~~ 613 (954)
T PRK05367 556 GYDA-----------VSLQPNAGAQGEYAGLLAIRAYHES------RGE-----GHRDVCLIPSSAHGTNPASAVMAGMK 613 (954)
T ss_pred CCCC-----------EEECccHHHHHHHHHHHHHHHHhhc------cCC-----CCCCEEEEEchhhhhhHHHHHHCCCE
Confidence 9973 2344668889999999888864321 221 13567999999999999988543448
Q ss_pred EEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcC
Q psy11047 325 MRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYF 404 (943)
Q Consensus 325 v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~G 404 (943)
++.|++|.+|.+|+++|+++|+.+. ..+.+|++|.++|..+..||+++|++ +|+++|
T Consensus 614 vv~v~~d~~G~iD~~~L~~~i~~~~---~~la~V~it~pst~G~~e~~I~eI~~--------------------i~h~~G 670 (954)
T PRK05367 614 VVVVACDENGNIDLDDLRAKAEEHA---DNLAAIMITYPSTHGVFEETIREICE--------------------IVHEHG 670 (954)
T ss_pred EEEECCCCCCCcCHHHHHHHHhccC---CCeEEEEEEcCCCCeeecCCHHHHHH--------------------HHHHcC
Confidence 9999999999999999999997631 23788999999998444599999999 999999
Q ss_pred CCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCC
Q psy11047 405 PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPS 484 (943)
Q Consensus 405 l~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpH 484 (943)
. |+|||||+.++ .+. +.+ +|-..||++++|+|
T Consensus 671 ~-------~v~VDgA~~~a-l~~----------------------------------l~~------pg~~GADi~~~s~H 702 (954)
T PRK05367 671 G-------QVYLDGANMNA-QVG----------------------------------LAR------PGDIGADVSHLNLH 702 (954)
T ss_pred C-------EEEEECcChhh-ccC----------------------------------CCC------hhhcCCCEEEecCc
Confidence 9 99999999655 220 111 12236899999999
Q ss_pred CccCccCcch-----hhhhcccCccccccCCCCcccccCccccCCCCCc----chHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11047 485 SLLRVKNSGA-----LHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF----RALKLWFVIRNFGIKGLQKHIREIFSG 555 (943)
Q Consensus 485 K~L~vr~~~~-----L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf----rALklW~tLr~~G~~Gl~~~I~~~l~~ 555 (943)
||++.+...- ....-..-.+||.....+...+....+...+.++ .+++.|+.++.+|.+|++++++.
T Consensus 703 K~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~---- 778 (954)
T PRK05367 703 KTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEV---- 778 (954)
T ss_pred ccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH----
Confidence 9988443211 0000012234544321110011111122223333 45679999999999999999998
Q ss_pred CCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEec--C--CCccEE
Q psy11047 556 LALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPA--A--RHLGMV 631 (943)
Q Consensus 556 ~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~--~--~~l~iV 631 (943)
.+.+|+++++.|.+. ++++. + +..+-+
T Consensus 779 -----------------------------------------------~~~~A~Yl~~~L~~~--~~~~~~~~~~~~~~e~ 809 (954)
T PRK05367 779 -----------------------------------------------AILNANYIAKRLKDH--YPVLYTGANGRVAHEC 809 (954)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHhh--cCccccCCCCCcccce
Confidence 356788888888664 44432 2 223344
Q ss_pred EEEecCC----ChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 632 VIRLLGE----NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 632 ~Fr~~g~----n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
+|++... +..+..+.++|...|....+ ..+...+.+|+...-.++++|||+++++|+.+..++.+
T Consensus 810 i~~~~~~~~~~g~~~~di~krL~d~G~~~~t-~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 810 ILDLRPLKESTGITVDDIAKRLIDYGFHAPT-MSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred EEEeecccccCCCCHHHHHHHHHHCCCeEee-cCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555321 12368899999998875443 23445678999888899999999999999999888766
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-22 Score=242.48 Aligned_cols=374 Identities=11% Similarity=0.052 Sum_probs=259.6
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCceeEEccCCC--ChHHHHHHHHHHHHhccCccccCChh-----HHHHHHHHHHHHHH
Q psy11047 170 KWDTIMGDIEKVIMPGITHWQSPYMHAYFPALN--SYPSLLGDMLSDAINCLGFTWASSPA-----CTELEIITMNWLGK 242 (943)
Q Consensus 170 ~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~--s~~silgd~L~~alN~n~~~~~~SPa-----ateLE~~Vi~wLa~ 242 (943)
+--++++.+.++-..... ..+ +|.+.+. .+...+.+++....+.....+...|. ..+++.+...||++
T Consensus 467 sE~e~~r~~~~L~~kn~~-~~~----~fi~lGsctmk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~e 541 (939)
T TIGR00461 467 SETEMLRYLHRLESKDLA-LNN----SMIPLGSCTMKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCS 541 (939)
T ss_pred CHHHHHHHHHHHHhcCCC-ccc----cCCCCccCCCccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHH
Confidence 556777777665332211 112 3343332 24456778887777776666667776 88999999999999
Q ss_pred HhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCC
Q psy11047 243 MIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGL 322 (943)
Q Consensus 243 LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~ 322 (943)
+.|++. .++..+||+++++.+|+++|.+... .| -..+.+|++|+.+|.+..+++.+-+
T Consensus 542 ltGmd~-----------~Sl~p~aGA~gE~agL~aiR~y~~~------rg-----e~~R~~vlip~saHgtnPasa~~~G 599 (939)
T TIGR00461 542 ITGFDA-----------ISLQPNSGAQGEYAGLRVIRSYHES------RG-----ENHRNICLIPVSAHGTNPASAAMAG 599 (939)
T ss_pred HHCCCC-----------cccCCchHHHHHHHHHHHHHHHHHh------cC-----CCCCCEEEEEccccCcCHHHHHHCC
Confidence 999984 5788999999999999999875311 11 0145689999999999988885434
Q ss_pred ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc-HHHhhhhccccccccccccccCchHHHHH
Q psy11047 323 VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS-YCCLGTAMIVKGLGFYKMKLQTNFPNFIL 401 (943)
Q Consensus 323 ~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp-L~eIa~~~~~~d~~~~~i~L~RrfR~iar 401 (943)
.+++.|++|++|.+|+++|++.|++ .+..+.+|++|.++| +|.++| +++|++ +|+
T Consensus 600 ~~Vv~V~~d~~G~iDle~L~~~i~~---~~~~taaV~iT~pst-~G~~e~~I~eI~~--------------------iah 655 (939)
T TIGR00461 600 MQVVPVNCDQDGNIDLVDLKNKAEQ---HGDELAAVMVTYPST-HGVFEPTIQHACD--------------------IVH 655 (939)
T ss_pred CEEEEeccCCCCCcCHHHHHHHHhh---cCCceEEEEEEeCCc-CceecccHHHHHH--------------------HHH
Confidence 5999999999999999999999986 233488999999999 699977 999999 999
Q ss_pred HcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEE
Q psy11047 402 SYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTI 481 (943)
Q Consensus 402 ~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSIti 481 (943)
++|. |+|||||+..+... ...+ |-..||.+.+
T Consensus 656 ~~G~-------~v~VDgAq~~al~~-----------------------------------l~~P------g~~GaDi~~~ 687 (939)
T TIGR00461 656 SFGG-------QVYLDGANMNAQVG-----------------------------------LTSP------GDLGADVCHL 687 (939)
T ss_pred HcCC-------EEEEEecChhhCCC-----------------------------------CCCc------cccCCCEEEe
Confidence 9999 99999998654111 1111 3347999999
Q ss_pred cCCCccCccCcch--hhhhcc---cCccccccCCCCccccc----CccccCCCCCcch----HHHHHHHHHHHHHHHHHH
Q psy11047 482 VPSSLLRVKNSGA--LHRTFN---VEPLYLRHENSGLAIDY----MHWQIPLSKRFRA----LKLWFVIRNFGIKGLQKH 548 (943)
Q Consensus 482 DpHK~L~vr~~~~--L~~af~---~~p~YL~~~~~g~~~d~----~~~tie~SRrfrA----LklW~tLr~~G~~Gl~~~ 548 (943)
|+||+++.+...- -...+. .-.+|+.....+...+. .+.+...++.+++ ++.|+.|+.+|.+|+++.
T Consensus 688 s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~ 767 (939)
T TIGR00461 688 NLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKA 767 (939)
T ss_pred cCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHH
Confidence 9999887222110 000000 01123322111110010 1223344455665 899999999999999999
Q ss_pred HHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC--
Q psy11047 549 IREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR-- 626 (943)
Q Consensus 549 I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~-- 626 (943)
.+. .+.+|.|+++.|.+ +++++.+.
T Consensus 768 a~~---------------------------------------------------ailnAnYl~~rL~~--~~~~l~~~~~ 794 (939)
T TIGR00461 768 SVV---------------------------------------------------AILNANYMATRLKD--HYPILFVGTL 794 (939)
T ss_pred HHH---------------------------------------------------HHHHHHHHHHHhhc--cCcccccCCC
Confidence 988 35678888888876 56887754
Q ss_pred --CccEEEEEecCC----ChHHHHHHHHHhccCcEEEeec-ccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 627 --HLGMVVIRLLGE----NILTEKLLKRLNSKGRLHCVPA-SLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 627 --~l~iV~Fr~~g~----n~l~~~Ll~~L~~~G~~~~s~t-~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
..+-++|++.+. +..+..+.++|...|....+.+ ...+...+|.. -.++.+|||++++++.++.+++.+
T Consensus 795 ~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepT--E~eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 795 KHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPT--ESESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred CceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccCCccCCeEEEEee--ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 344488888742 2447899999999997544422 22343344442 277899999999999999888776
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-20 Score=216.47 Aligned_cols=380 Identities=13% Similarity=0.090 Sum_probs=246.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEc-cCCCChHHHHHHHHHHHHhccCccc---cCChhHHHHHHHHHH
Q psy11047 163 SAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYF-PALNSYPSLLGDMLSDAINCLGFTW---ASSPACTELEIITMN 238 (943)
Q Consensus 163 ~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~-~~~~s~~silgd~L~~alN~n~~~~---~~SPaateLE~~Vi~ 238 (943)
.+|+ .+-.++++.+.++-..... ..+ .|.|.- +....+|.+...++......+-..| ..+....++..++.+
T Consensus 45 ~~~~--~se~~~~~~~~~l~~~n~~-~~~-~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~ 120 (481)
T PRK04366 45 ELPE--VSELEVVRHYTRLSQKNYG-VDT-GFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQE 120 (481)
T ss_pred CCCC--CCHHHHHHHHHHHHhcCCC-CCc-ceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHH
Confidence 4565 7888999998876443322 122 455443 2223455555555544111233445 245567788899999
Q ss_pred HHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH
Q psy11047 239 WLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG 318 (943)
Q Consensus 239 wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa 318 (943)
|+++++|++. ..++.++|+.+++.++.++|..... +|. ..+..|++++..|.+..+++
T Consensus 121 ~la~l~G~~~-----------~~l~~~~GA~a~~~~l~~~r~~~~~------~Gd-----~~~~~Vlv~~~~hp~~~~~~ 178 (481)
T PRK04366 121 WLKEITGMDA-----------VTLQPAAGAHGELTGLLMIRAYHEA------RGD-----TKRTEVIVPDSAHGTNPASA 178 (481)
T ss_pred HHHHHhCCCc-----------eEEEeCcHHHHHHHHHHHHHHHhhc------cCc-----CCCCEEEEcCCccHhHHHHH
Confidence 9999999973 3566788888888887766643221 221 02345888999999999888
Q ss_pred HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc-ccHHHhhhhccccccccccccccCchH
Q psy11047 319 LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV-DSYCCLGTAMIVKGLGFYKMKLQTNFP 397 (943)
Q Consensus 319 ~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI-DpL~eIa~~~~~~d~~~~~i~L~RrfR 397 (943)
.+.+.+++.++++.+|.+|+++|+++|..+ +.+|+.+..+ .+|.+ +|+++|++
T Consensus 179 ~~~G~~vv~v~~~~~~~~D~e~L~~~i~~~------t~~V~v~~Pn-~tG~~~~dl~eI~~------------------- 232 (481)
T PRK04366 179 AMAGFKVVEIPSNEDGLVDLEALKAAVGED------TAALMLTNPN-TLGLFERNILEIAE------------------- 232 (481)
T ss_pred HHcCCEEEEeecCCCCCcCHHHHHhhcccC------CeEEEEeCCC-CccccchHHHHHHH-------------------
Confidence 655558999999888999999999999764 5567777766 78888 68999999
Q ss_pred HHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCee
Q psy11047 398 NFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQ 477 (943)
Q Consensus 398 ~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~AD 477 (943)
+|+++|. |+|||+|+..+ .+ | ..+. |-..||
T Consensus 233 -~a~~~ga-------l~iVD~a~~~~-~~--------g--------------------------~~~~------~~~GaD 263 (481)
T PRK04366 233 -IVHEAGG-------LLYYDGANLNA-IL--------G--------------------------KARP------GDMGFD 263 (481)
T ss_pred -HHHHcCC-------EEEEEecChhh-hc--------c--------------------------cCCc------cccCCC
Confidence 9999999 99999998544 11 0 0111 123689
Q ss_pred EEEEcCCCccCccCcc------h------hhhhcccCccccccCCCCccccc-CccccCCCCCcc-----hHHHHHHHHH
Q psy11047 478 NFTIVPSSLLRVKNSG------A------LHRTFNVEPLYLRHENSGLAIDY-MHWQIPLSKRFR-----ALKLWFVIRN 539 (943)
Q Consensus 478 SItiDpHK~L~vr~~~------~------L~~af~~~p~YL~~~~~g~~~d~-~~~tie~SRrfr-----ALklW~tLr~ 539 (943)
++++++||||+.+... . +.+.+ .+.++...+.+...++ +...+...|.+. ++++|..++.
T Consensus 264 ~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~l--p~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~ 341 (481)
T PRK04366 264 VVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFL--PVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRS 341 (481)
T ss_pred EEEEechhhcCCCCCCCCCCeeeeeehhhhHhhC--CCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHH
Confidence 9999999998733211 1 11111 1111111111111111 111222233333 3799999999
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCC
Q psy11047 540 FGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPR 619 (943)
Q Consensus 540 ~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~ 619 (943)
+|.+|+++..++ .+++|++|++.|+++
T Consensus 342 ~G~~Gl~~~a~~---------------------------------------------------~~~~a~~l~~~L~~~-- 368 (481)
T PRK04366 342 LGAEGLREVSED---------------------------------------------------AVLNANYLKARLKDI-- 368 (481)
T ss_pred HHHHHHHHHHHH---------------------------------------------------HHHHHHHHHHHhHhh--
Confidence 999999998887 356788888888876
Q ss_pred eEEecC-CCccEEEEEecC--C-ChHHHHHHHHHhccCcEEEee-cccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 620 FEIPAA-RHLGMVVIRLLG--E-NILTEKLLKRLNSKGRLHCVP-ASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 620 ~eIl~~-~~l~iV~Fr~~g--~-n~l~~~Ll~~L~~~G~~~~s~-t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+++..+ +..+.+.|.... . +..+..+.++|.++|+..... ........+|++++..+|++|||+++++|+++.++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~ 448 (481)
T PRK04366 369 YDLPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEE 448 (481)
T ss_pred CcccCCCCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHH
Confidence 444432 333444444321 0 113678999999998643211 00112458999999999999999999999999888
Q ss_pred HHHH
Q psy11047 695 ILAE 698 (943)
Q Consensus 695 ll~~ 698 (943)
+.++
T Consensus 449 ~~~~ 452 (481)
T PRK04366 449 AKEN 452 (481)
T ss_pred HHhC
Confidence 7765
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=206.69 Aligned_cols=298 Identities=15% Similarity=0.089 Sum_probs=199.9
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.++...++..++++.+++++|.+.+ ..+||+|||++++.++..+..... . ++..|
T Consensus 37 ~~~~~~~~~~~~r~~la~~~g~~~~----------~v~~t~~~t~a~~~~l~~~~~~~~------~---------~g~~v 91 (364)
T PLN02651 37 YGWESEDAVEKARAQVAALIGADPK----------EIIFTSGATESNNLAIKGVMHFYK------D---------KKKHV 91 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC----------eEEEeCCHHHHHHHHHHHHHHhcc------C---------CCCEE
Confidence 3455667777899999999998653 689999999999999877643211 1 12357
Q ss_pred EecCCCchHHHHHH-HH--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 305 YCSDQAHSSVEKAG-LI--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 305 ~~S~~aHySv~KAa-~L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
+++..+|.|+.+++ .+ .+.+++.|+++.++.+|+++|+++|+++ +.+|+.+..++.+|.+.|+++|++
T Consensus 92 l~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~------t~lv~v~~~~n~tG~~~~l~~I~~--- 162 (364)
T PLN02651 92 ITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRPD------TALVSVMAVNNEIGVIQPVEEIGE--- 162 (364)
T ss_pred EEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCC------cEEEEEECCCCCceecccHHHHHH---
Confidence 88999999987766 22 2357889999888999999999999754 668888999999999999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcc
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRL 461 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~ 461 (943)
+|+++|+ |+||||+++.+ .+ |
T Consensus 163 -----------------~~~~~g~-------~~~vD~a~~~g-~~--~-------------------------------- 183 (364)
T PLN02651 163 -----------------LCREKKV-------LFHTDAAQAVG-KI--P-------------------------------- 183 (364)
T ss_pred -----------------HHHHcCC-------EEEEEcchhhC-Cc--c--------------------------------
Confidence 9999999 99999999876 32 1
Q ss_pred cccchhhhhcCCCCeeEEEEcCCCccCccCcchh--hh-hc-ccCccccccCCCCcccccCccccCCCCCcchHHHHHHH
Q psy11047 462 HCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL--HR-TF-NVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVI 537 (943)
Q Consensus 462 ~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L--~~-af-~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tL 537 (943)
.. +..+ .+|.+++++|||++.+..+.+ .+ .. ...|.+.+ | +.+ +++++ .+.
T Consensus 184 -~~-----~~~~-~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~~~g----~--------~~~--~~~~~----GT~ 238 (364)
T PLN02651 184 -VD-----VDDL-GVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSG----G--------GQE--RGRRS----GTE 238 (364)
T ss_pred -cC-----cccC-CCCEEEechhhhCCCCceEEEEEcCCCCCCCCccccC----C--------Ccc--CCccC----CCc
Confidence 11 1112 479999999999763222222 00 00 11121111 0 001 12221 144
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhC-
Q psy11047 538 RNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG- 616 (943)
Q Consensus 538 r~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~- 616 (943)
...+..|+.+.++.+.+ +.+.++++ ..+|++++.+.|.+
T Consensus 239 ~~~~~~~l~~al~~~~~----------------~~~~i~~~------------------------~~~l~~~l~~~l~~~ 278 (364)
T PLN02651 239 NTPLVVGLGAACELAMK----------------EMDYDEKH------------------------MKALRERLLNGLRAK 278 (364)
T ss_pred cHHHHHHHHHHHHHHHH----------------hHHHHHHH------------------------HHHHHHHHHHHHHhh
Confidence 45555566666665321 11222211 57789999998875
Q ss_pred CCCeEEecC--C---CccEEEEEecCCChHHHHHHHHHhc---cCcEEEeecc------c---C-----CCcEEEEeecC
Q psy11047 617 DPRFEIPAA--R---HLGMVVIRLLGENILTEKLLKRLNS---KGRLHCVPAS------L---R-----IQGLGRAQNFT 674 (943)
Q Consensus 617 ~p~~eIl~~--~---~l~iV~Fr~~g~n~l~~~Ll~~L~~---~G~~~~s~t~------~---~-----g~~~lR~v~~~ 674 (943)
.|+++++.+ + ..++++|.+++.+ .+.+.++|.+ +...+|++.. + . ..+++|+++++
T Consensus 279 ~~~~~i~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~L~~i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~ 356 (364)
T PLN02651 279 LGGVRVNGPRDPEKRYPGTLNLSFAYVE--GESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGR 356 (364)
T ss_pred CCCEEEECCCCcccCcCCEEEEEeCCCC--HHHHHHHhCCEEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCC
Confidence 789999985 2 2569999998754 4667777743 1111222110 1 1 24799999999
Q ss_pred CCCHHHHH
Q psy11047 675 RTTNDDIT 682 (943)
Q Consensus 675 ~tt~edId 682 (943)
+||++|||
T Consensus 357 ~~t~~did 364 (364)
T PLN02651 357 FTTEEEVD 364 (364)
T ss_pred CCCHHHcC
Confidence 99999985
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.8e-20 Score=202.22 Aligned_cols=316 Identities=12% Similarity=0.049 Sum_probs=212.4
Q ss_pred CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcC
Q psy11047 220 GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEIN 299 (943)
Q Consensus 220 ~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~ 299 (943)
...+..++....+..++++++++++|.++. ...++|+|+|+++..++.+.... ..+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---------~~v~~~~g~t~a~~~~~~~l~~~-------~~~-------- 87 (373)
T cd06453 32 RGVHELSARATDAYEAAREKVARFINAPSP---------DEIIFTRNTTEAINLVAYGLGRA-------NKP-------- 87 (373)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhCCCCC---------CeEEEeCCHHHHHHHHHHHhhhc-------CCC--------
Confidence 345566677788888899999999998732 25789999999987776653210 001
Q ss_pred CceEEEecCCCchHHHHH----HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHH
Q psy11047 300 SRLVAYCSDQAHSSVEKA----GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCC 375 (943)
Q Consensus 300 ~~~vV~~S~~aHySv~KA----a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~e 375 (943)
...|++++.+|++...+ +...+.+++.|+.+.++.+|++++++.|.++ +.+|+.+..++.+|.++|+++
T Consensus 88 -g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~~~tG~~~~~~~ 160 (373)
T cd06453 88 -GDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTER------TKLVAVTHVSNVLGTINPVKE 160 (373)
T ss_pred -CCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCC------ceEEEEeCcccccCCcCCHHH
Confidence 23477899999996443 3222348999999989999999999999753 678888999999999999999
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHh
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRL 455 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l 455 (943)
|.+ +|+++|+ |+|+|+|++.. .+ +
T Consensus 161 i~~--------------------~~~~~~~-------~li~D~a~~~~-~~--~-------------------------- 184 (373)
T cd06453 161 IGE--------------------IAHEAGV-------PVLVDGAQSAG-HM--P-------------------------- 184 (373)
T ss_pred HHH--------------------HHHHcCC-------EEEEEhhhhcC-ce--e--------------------------
Confidence 999 9999999 99999998755 22 1
Q ss_pred hccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh--h-hcccCccccccCCCCccc--ccCccc-----cC-C
Q psy11047 456 NSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH--R-TFNVEPLYLRHENSGLAI--DYMHWQ-----IP-L 524 (943)
Q Consensus 456 ~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~--~-af~~~p~YL~~~~~g~~~--d~~~~t-----ie-~ 524 (943)
. .. .. ..+|++++++|||++....+.+. . ....-..|..+...-... +...|. ++ +
T Consensus 185 -------~-~~----~~-~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 251 (373)
T cd06453 185 -------V-DV----QD-LGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAG 251 (373)
T ss_pred -------e-ec----cc-cCCCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCC
Confidence 0 01 11 14799999999998842211110 0 000001122111000000 011111 11 1
Q ss_pred CCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHH
Q psy11047 525 SKR-FRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQS 603 (943)
Q Consensus 525 SRr-frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~ 603 (943)
+.. ...+.+|.+++.+...|+.+..++ .
T Consensus 252 t~~~~~~~al~~al~~l~~~g~~~~~~~---------------------------------------------------~ 280 (373)
T cd06453 252 TPNIAGAIGLGAAIDYLEKIGMEAIAAH---------------------------------------------------E 280 (373)
T ss_pred CCCHHHHHHHHHHHHHHHHcCHHHHHHH---------------------------------------------------H
Confidence 222 234577777777777777665555 3
Q ss_pred HHHHHHHHHHHhCCCCeEEecCC--CccEEEEEecCCChHHHHHHHHHhccCcEEEeecc--------cCCCcEEEEeec
Q psy11047 604 VRLAQKFEALVLGDPRFEIPAAR--HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS--------LRIQGLGRAQNF 673 (943)
Q Consensus 604 ~~LA~~l~~~L~~~p~~eIl~~~--~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~--------~~g~~~lR~v~~ 673 (943)
.++++++.+.|.++|+++++.++ ..++++|++++.+ ..++.++|..+|...-.... ....+.+|++++
T Consensus 281 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~ 358 (373)
T cd06453 281 HELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGIH--PHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFG 358 (373)
T ss_pred HHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCcC--HHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEec
Confidence 56888999999999999998543 5789999987543 46788888887764321110 112568999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy11047 674 TRTTNDDITRDWNEI 688 (943)
Q Consensus 674 ~~tt~edId~ll~~I 688 (943)
+.+|.+|+++++++|
T Consensus 359 ~~~t~~di~~~~~~l 373 (373)
T cd06453 359 LYNTEEEIDALVEAL 373 (373)
T ss_pred CCCCHHHHHHHHhhC
Confidence 999999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=202.36 Aligned_cols=308 Identities=17% Similarity=0.100 Sum_probs=209.3
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
++....+..++++++++++|.+.+ ..+||+|||+++..++.+..... + ++.+|+
T Consensus 37 ~~~~~~~~~~~r~~la~~~g~~~~----------~i~~t~~~t~a~~~al~~~~~~~--------~--------~~~~vv 90 (379)
T TIGR03402 37 GGEVGKAVEEAREQVAKLLGAEPD----------EIIFTSGGTESDNTAIKSALAAQ--------P--------EKRHII 90 (379)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC----------eEEEeCcHHHHHHHHHHHHHHhc--------C--------CCCeEE
Confidence 455667777899999999998753 68999999999998887653210 1 123577
Q ss_pred ecCCCchHHHHHHH-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 306 CSDQAHSSVEKAGL-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 306 ~S~~aHySv~KAa~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
++..+|.|+..++. + .+.+++.||++.+|.+|++++++.|+++ +.+|+.+..++.+|.+.|+++|++
T Consensus 91 ~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~------~~lv~i~~~~n~tG~~~~~~~I~~---- 160 (379)
T TIGR03402 91 TTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITDD------TALVSVMWANNETGTIFPIEEIGE---- 160 (379)
T ss_pred EcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCCC------cEEEEEEcccCCeeecccHHHHHH----
Confidence 88999999877652 2 3458899999888999999999998654 678888889999999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+|+++|+ ++|+|++++.. .. |
T Consensus 161 ----------------l~~~~g~-------~vivD~~~~~g-~~--~--------------------------------- 181 (379)
T TIGR03402 161 ----------------IAKERGA-------LFHTDAVQAVG-KI--P--------------------------------- 181 (379)
T ss_pred ----------------HHHHcCC-------EEEEECccccc-cc--c---------------------------------
Confidence 9999999 99999998765 22 1
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccCccCcchh--hhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHH
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL--HRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNF 540 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L--~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~ 540 (943)
.+ +.. ..+|.+++++||+++...-..+ ...+...| ++. | . ..+ +++++ .+.+..
T Consensus 182 ~~-----~~~-~~~D~~~~s~~K~~gp~G~g~l~v~~~~~~~p-~~~----g------~-~~~--~~~~~----gt~~~~ 237 (379)
T TIGR03402 182 ID-----LKE-MNIDMLSLSGHKLHGPKGVGALYIRKGTRFRP-LLR----G------G-HQE--RGRRA----GTENVP 237 (379)
T ss_pred cC-----ccc-CCCCEEEEcHHHcCCCCceEEEEECCCCCCCC-ccc----C------C-ccC--CCcCC----CCccHH
Confidence 00 111 2579999999996663322211 00001111 111 0 0 001 11221 144555
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhC-CCC
Q psy11047 541 GIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG-DPR 619 (943)
Q Consensus 541 G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~-~p~ 619 (943)
|..++.+.++.+.+ +++.+.++ ..++++++.+.|++ +|+
T Consensus 238 ~~~~l~~al~~~~~----------------~~~~~~~~------------------------~~~l~~~l~~~l~~~~~~ 277 (379)
T TIGR03402 238 GIVGLGKAAELATE----------------HLEEENTR------------------------VRALRDRLEAGLLARIPD 277 (379)
T ss_pred HHHHHHHHHHHHHH----------------hHHHHHHH------------------------HHHHHHHHHHHHHhhCCC
Confidence 55666666665321 01111110 46788888888885 899
Q ss_pred eEEecCCC---ccEEEEEecCCChHHHHHHHHHhccCcEEEeec-----c--------------cCCCcEEEEeecCCCC
Q psy11047 620 FEIPAARH---LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA-----S--------------LRIQGLGRAQNFTRTT 677 (943)
Q Consensus 620 ~eIl~~~~---l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t-----~--------------~~g~~~lR~v~~~~tt 677 (943)
+++..++. .++++|.+.+.+ .+.+.+.|.++|...-+.+ . ....+.+|++++++||
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t 355 (379)
T TIGR03402 278 ARLNGDPTKRLPNTVNISFEYIE--GEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNT 355 (379)
T ss_pred EEEeCCCccCCCCEEEEEecCCC--HHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCC
Confidence 99987542 468999887654 4678888877775432211 0 0114689999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11047 678 NDDITRDWNEIRNTATE 694 (943)
Q Consensus 678 ~edId~ll~~I~~~~~~ 694 (943)
++||+++++.|+++.+.
T Consensus 356 ~~di~~~~~~l~~~~~~ 372 (379)
T TIGR03402 356 EEDIDYVLEVLPPIIAR 372 (379)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999997765
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-19 Score=200.54 Aligned_cols=320 Identities=13% Similarity=0.081 Sum_probs=206.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
+..++...+.-.++++.+++++|.++. ...+||+|+|+++..++.+...... . +..
T Consensus 54 ~~~~~~~~~~~~~~r~~ia~~~~~~~~---------~~v~~~~g~t~~l~~~~~~~~~~~~------~---------~g~ 109 (403)
T TIGR01979 54 HTLSVRATEAYEAVREKVAKFINAASD---------EEIVFTRGTTESINLVAYSWGDSNL------K---------AGD 109 (403)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCcCCC---------CeEEEeCCHHHHHHHHHHHhhhhcC------C---------CCC
Confidence 334455555666788999999999732 2689999999997655543211100 1 223
Q ss_pred EEEecCCCchHHH----HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSSVE----KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~----KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
.|++++.+|.|.. +++...+.+++.++++++|.+|++++++.+.++ +.+|+.+..++.+|.+.|+++|++
T Consensus 110 ~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~------~~lv~~~~~~~~tG~~~~~~~i~~ 183 (403)
T TIGR01979 110 EIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEK------TKLVAITHVSNVLGTVNPVEEIAK 183 (403)
T ss_pred EEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccC------CeEEEEEcccccccccCCHHHHHH
Confidence 5888999998854 344333458899999989999999999998654 778889999999999999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhcc
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK 458 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~ 458 (943)
+|++||+ |+|+|+|++.. .. +
T Consensus 184 --------------------~~~~~~~-------~~ivD~a~~~g-~~--~----------------------------- 204 (403)
T TIGR01979 184 --------------------LAHQVGA-------KVLVDGAQAVP-HM--P----------------------------- 204 (403)
T ss_pred --------------------HHHHcCC-------EEEEEchhhcC-cc--c-----------------------------
Confidence 9999999 99999999765 21 1
Q ss_pred CcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh---hhcccCccccccCCCCcccccCc-------cccC-CCCC
Q psy11047 459 GRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH---RTFNVEPLYLRHENSGLAIDYMH-------WQIP-LSKR 527 (943)
Q Consensus 459 G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~---~af~~~p~YL~~~~~g~~~d~~~-------~tie-~SRr 527 (943)
. . +.. ..+|.+++++||+++...-+.+. +....-.+|..+.......+... +.++ ++..
T Consensus 205 ----~-~----~~~-~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~ 274 (403)
T TIGR01979 205 ----V-D----VQA-LDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPN 274 (403)
T ss_pred ----c-C----ccc-cCCCEEEEecccccCCCCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCcc
Confidence 0 0 111 14799999999988732211110 00010112222111000000000 1111 1111
Q ss_pred c-chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHH
Q psy11047 528 F-RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRL 606 (943)
Q Consensus 528 f-rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~L 606 (943)
. ..+.++.+++.+...|+.+..++ ..++
T Consensus 275 ~~~~~al~~al~~~~~~g~~~~~~~---------------------------------------------------~~~l 303 (403)
T TIGR01979 275 IAGVIGLGAAIDYLEAIGLENIEAH---------------------------------------------------EHEL 303 (403)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHH---------------------------------------------------HHHH
Confidence 1 12334444444433344333333 3567
Q ss_pred HHHHHHHHhCCCCeEEecCC----CccEEEEEecCCChHHHHHHHHHhccCcEEEeec---------ccCCCcEEEEeec
Q psy11047 607 AQKFEALVLGDPRFEIPAAR----HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA---------SLRIQGLGRAQNF 673 (943)
Q Consensus 607 A~~l~~~L~~~p~~eIl~~~----~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t---------~~~g~~~lR~v~~ 673 (943)
++++.+.|+++++++++.+. ..++++|++.+.+ ..++.+.|.++|.. +... .....+++|++++
T Consensus 304 ~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~L~~~gI~-v~~g~~~~~~~~~~~~~~~~iRiS~~ 380 (403)
T TIGR01979 304 TAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVH--PHDVGTILDEEGIA-VRSGHHCAQPLMRRFGVPATCRASFY 380 (403)
T ss_pred HHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCcC--HHHHHHHHhhCCEE-EcchhhhhHHHHHHhCCCCEEEEEec
Confidence 88899999999999998754 3789999987643 45777888888753 3311 1122568999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q psy11047 674 TRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 674 ~~tt~edId~ll~~I~~~~~~l 695 (943)
+++|++||+++++.|+++.+.+
T Consensus 381 ~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 381 IYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred cCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998876543
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=206.74 Aligned_cols=273 Identities=16% Similarity=0.114 Sum_probs=180.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCC--------CCc---------eeEEccC---CCChHHHHHHHHHHHHhccCc
Q psy11047 162 ESAPVEPEKWDTIMGDIEKVIMPGITHWQ--------SPY---------MHAYFPA---LNSYPSLLGDMLSDAINCLGF 221 (943)
Q Consensus 162 ~~lPe~G~~~e~iL~~l~~~I~~~~~~~~--------sPr---------f~g~~~~---~~s~~silgd~L~~alN~n~~ 221 (943)
..+|++|.+.+.|...|.++-.-...+|. -.| ++++.++ ... ++. ..-
T Consensus 28 ~~~p~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~gere~rv~~~~~~~~~~~~~hgigr~~~-------l~~-----~q~ 95 (444)
T TIGR03531 28 RKIPEEGWDDETIELFLHELSVMDTNNFPNNVGVGEREGRVFSKLVARRHYRFCHGIGRSGD-------LVA-----PQP 95 (444)
T ss_pred CcCCccCCCHHHHHHHHHHHhcCCcCCCccccCcCcccceeechhhhhcccceecCCCCccc-------ccc-----cCc
Confidence 47899999999999888876444555565 112 2222222 111 100 000
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChH-HHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTAS-ESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGT-eANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
--..|+....++.....|+++++|.+.. ..+++++||| +++.++|.++|.+. + .+
T Consensus 96 ka~gss~~~~l~~~~e~~~~~~~G~~~~---------~~a~~v~~~Tg~al~laL~alr~~~--------~-------~g 151 (444)
T TIGR03531 96 KAAGSSLLYKLTNKLVKDFLKLLGLRSI---------KSAFVVPLATGMSLSLCLSALRHKR--------P-------KA 151 (444)
T ss_pred cccCccHHHHHHHHHHHHHHHHcCCCCC---------CEEEEECCHHHHHHHHHHHHcCCcC--------C-------CC
Confidence 1123566788999999999999999743 3578999999 79999988765310 0 13
Q ss_pred ceEEEecCCCchHHHHHHHHCCccEEEEec---CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 301 RLVAYCSDQAHSSVEKAGLIGLVNMRYIES---DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~---D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
+.||+.+ .+|+|+.||+.+.+...+.|++ ++++.||+++|+++|++... ..+++|+.|.+|+..|..||+++|+
T Consensus 152 d~VI~p~-~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~--kai~~Vv~Tp~t~~~g~~ddL~eIa 228 (444)
T TIGR03531 152 KYVIWPR-IDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIGP--DNILCVLSTTSCFAPRSPDDIEEIA 228 (444)
T ss_pred CEEEEEC-cChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhccC--CCEEEEEEcCCcCCCcchhCHHHHH
Confidence 4556554 6799999999654447777774 46789999999999985321 2356677777777778999999999
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhc
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNS 457 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~ 457 (943)
+ +|++||+ |+|+|+|||....
T Consensus 229 ~--------------------la~k~gI-------~lIvDaAyg~~~~-------------------------------- 249 (444)
T TIGR03531 229 K--------------------ICANYDI-------PHIVNNAYGLQSN-------------------------------- 249 (444)
T ss_pred H--------------------HHHHcCC-------EEEEECcCcCcCh--------------------------------
Confidence 9 9999999 9999999986411
Q ss_pred cCcccccchhhhh-cCC--CCeeEEEEcCCCccCcc-CcchhhhhcccCccccccCCCCcccccCccccCCC-CCcchHH
Q psy11047 458 KGRLHCVPASLRI-QGL--GRAQNFTIVPSSLLRVK-NSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLS-KRFRALK 532 (943)
Q Consensus 458 ~G~~~~p~~r~~l-~Gi--e~ADSItiDpHK~L~vr-~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~S-RrfrALk 532 (943)
.+.+.+ +|. .++|++++|+||++.+. +...+. ..++.++..-. .. | .+. ....+++
T Consensus 250 -------~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~---~~d~el~~~i~----~~---y--~g~~~~s~~~~ 310 (444)
T TIGR03531 250 -------KYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIY---SFDENFIQEIS----KS---Y--PGRASASPSLD 310 (444)
T ss_pred -------hhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEE---ECCHHHHHHHH----Hh---c--cCCCCChHHHH
Confidence 111122 232 25899999999999842 222210 01111111000 00 0 011 1234789
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11047 533 LWFVIRNFGIKGLQKHIRE 551 (943)
Q Consensus 533 lW~tLr~~G~~Gl~~~I~~ 551 (943)
+|++++.+|.+||++++++
T Consensus 311 ~~~~ll~~G~~g~~~li~~ 329 (444)
T TIGR03531 311 VLITLLSLGSKGYLELLKE 329 (444)
T ss_pred HHHHHHHhCHHHHHHHHHH
Confidence 9999999999999999998
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=204.93 Aligned_cols=373 Identities=13% Similarity=0.036 Sum_probs=235.6
Q ss_pred ChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHH------HHHHHHHhccCccccC
Q psy11047 152 KPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLG------DMLSDAINCLGFTWAS 225 (943)
Q Consensus 152 ~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silg------d~L~~alN~n~~~~~~ 225 (943)
=|..++...+..+|+++ +.+++++++.+..........|+.++|.-..+...|..+- ++++. +|++.. +.
T Consensus 31 ~p~~~~~~~~~~lp~~~-~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p~~~~~~~~~~~~~~~-y~~~~~--~~ 106 (447)
T PRK00451 31 IPEELRLKRPLDLPPGL-SEMELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIPAVVDHIISRSEFYTA-YTPYQP--EI 106 (447)
T ss_pred CCHHHHhCCCCCCCCCC-CHHHHHHHHHHHHhcCCCcCcCcccCcccccCCcCcHHHHHHHhchhHHHh-cCCCCC--cc
Confidence 36778777777899876 9999999999876544443347888774222222232222 33333 444333 33
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
++...+.+.+...|+++++|++.. .+.+|+|||+++ .+++.|+.. . + +..|+
T Consensus 107 ~~g~~~~~~e~~~~la~l~g~~~~----------~v~~~~g~t~~~-~~~~~a~~~--~------~---------g~~Vl 158 (447)
T PRK00451 107 SQGTLQAIFEYQTMICELTGMDVA----------NASMYDGATALA-EAALMAVRI--T------K---------RKKVL 158 (447)
T ss_pred chHHHHHHHHHHHHHHHHhCCCcc----------eEEecCcHHHHH-HHHHHHHHh--c------C---------CCEEE
Confidence 555677777788899999999754 588999999854 455545421 0 1 22478
Q ss_pred ecCCCchHHHHHHH-H---CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 306 CSDQAHSSVEKAGL-I---GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 306 ~S~~aHySv~KAa~-L---G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
+++.+|.+..+++. + .+.+++.++++++ ++|+++|+++|+++ +.+|+.+.. +.+|.++|+++|++
T Consensus 159 v~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~~------t~~v~l~~p-n~tG~v~~l~~I~~--- 227 (447)
T PRK00451 159 VSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVDDD------TAAVVVQYP-NFFGVIEDLEEIAE--- 227 (447)
T ss_pred EeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcCCC------eEEEEEECC-CCCCeeCCHHHHHH---
Confidence 89999999998873 2 2358999999877 99999999999754 567777765 78999999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhH--HhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccC
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKF--EALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKG 459 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHV--DAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G 459 (943)
+|+++|+ |++| |+...|. +
T Consensus 228 -----------------~a~~~~~-------~~iv~~d~~~~g~--~--------------------------------- 248 (447)
T PRK00451 228 -----------------IAHAGGA-------LFIVGVDPVSLGL--L--------------------------------- 248 (447)
T ss_pred -----------------HHHHCCC-------EEEEEcChHHhcc--C---------------------------------
Confidence 9999999 9988 6443222 1
Q ss_pred cccccchhhhhcCCCCeeEEEEcCCCccC------ccC-----cchhhhhcccCccccccC--CCCc-cc--c-------
Q psy11047 460 RLHCVPASLRIQGLGRAQNFTIVPSSLLR------VKN-----SGALHRTFNVEPLYLRHE--NSGL-AI--D------- 516 (943)
Q Consensus 460 ~~~~p~~r~~l~Gie~ADSItiDpHK~L~------vr~-----~~~L~~af~~~p~YL~~~--~~g~-~~--d------- 516 (943)
..+ +-..+|.++.++|||.. .+- +..+.+.+ .+..+... ..+. .+ +
T Consensus 249 --~~~-------~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~ 317 (447)
T PRK00451 249 --KPP-------GEYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQM--PGRLVGETVDADGKRGFVLTLQAREQH 317 (447)
T ss_pred --CCc-------ccCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhC--CCCEeeeecccCCCeeeEeeccccccc
Confidence 011 11367999999999721 110 00111111 01000000 0000 00 0
Q ss_pred --cCcccc-CCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcc
Q psy11047 517 --YMHWQI-PLSKR-FRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPN 592 (943)
Q Consensus 517 --~~~~ti-e~SRr-frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~ 592 (943)
....+. .+++. ..++..+..++.+|..|+++..++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~----------------------------------------- 356 (447)
T PRK00451 318 IRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQ----------------------------------------- 356 (447)
T ss_pred cccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHH-----------------------------------------
Confidence 000000 01111 122445555667777887776666
Q ss_pred cccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEE---EeecccCCCcEEE
Q psy11047 593 FILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH---CVPASLRIQGLGR 669 (943)
Q Consensus 593 ~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~---~s~t~~~g~~~lR 669 (943)
..++++++.+.|++++++++...+.++.+++++. .+ ..++.++|.++|.+- .++.......++|
T Consensus 357 ----------~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~-~~--~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~r 423 (447)
T PRK00451 357 ----------NHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLP-KP--AEEVNEALLEKGILGGYDLGRYYPELGNHLL 423 (447)
T ss_pred ----------HHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecC-CC--HHHHHHHHHhcCCCCCcccccccCCcCCEEE
Confidence 3567889999999999999874444555566653 22 467888888887541 1111001135899
Q ss_pred EeecCCCCHHHHHHHHHHHHHH
Q psy11047 670 AQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 670 ~v~~~~tt~edId~ll~~I~~~ 691 (943)
++++..+|++||+++++.|+++
T Consensus 424 vs~~~~~t~e~i~~l~~~L~~~ 445 (447)
T PRK00451 424 VCVTEKRTKEDIDALVAALGEV 445 (447)
T ss_pred EecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999865
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-19 Score=199.38 Aligned_cols=356 Identities=13% Similarity=0.042 Sum_probs=223.5
Q ss_pred ceeEEccCCCChHHHHHHHHHHHHhcc-----CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCCh
Q psy11047 193 YMHAYFPALNSYPSLLGDMLSDAINCL-----GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTA 267 (943)
Q Consensus 193 rf~g~~~~~~s~~silgd~L~~alN~n-----~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGG 267 (943)
-|+.+-..++.+..++ +.+..+++.. ...+..++...++-..+++.+++++|.++. ...+||+|+
T Consensus 18 iyld~a~~~~~p~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---------~~i~~t~g~ 87 (398)
T TIGR03392 18 VYLDSAATALKPQAVI-DATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDA---------ENIVWTRGT 87 (398)
T ss_pred EEeeCccccCCCHHHH-HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC---------CeEEEeCCh
Confidence 3455444444344443 4444444221 122333445566667799999999998532 258899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH----HHHHHCCccEEEEecCCCCCcCHHHHHH
Q psy11047 268 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE----KAGLIGLVNMRYIESDDKLSLRGDKLIE 343 (943)
Q Consensus 268 TeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~----KAa~LG~~~v~~Vp~D~~grmD~daLe~ 343 (943)
|+++..++.+.... .. .+ .-.|++++.+|+|.. ..+...+.+++.+|++.++.+|+++|++
T Consensus 88 t~~l~~~~~~~~~~---~~---~~---------gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~ 152 (398)
T TIGR03392 88 TESINLVAQSYARP---RL---QP---------GDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPE 152 (398)
T ss_pred HHHHHHHHHHhhhc---cC---CC---------CCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHH
Confidence 99987665542100 00 11 225788899998843 3333344588999998888999999999
Q ss_pred HHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 344 AIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 344 aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|.++ +.+|+.+..++.+|.+.|+++|++ +|+++|+ ++++|++++..
T Consensus 153 ~i~~~------t~lv~i~~~~n~tG~~~~~~~i~~--------------------~~~~~~~-------~~ivD~a~~~~ 199 (398)
T TIGR03392 153 LLTPR------TRILALGQMSNVTGGCPDLARAIT--------------------LAHQYGA-------VVVVDGAQGVV 199 (398)
T ss_pred HhccC------ceEEEEECccccccccCCHHHHHH--------------------HHHHcCC-------EEEEEhhhhcC
Confidence 98654 668888899999999999999999 9999999 99999999754
Q ss_pred CccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh---hhcc
Q psy11047 424 PRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH---RTFN 500 (943)
Q Consensus 424 ~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~---~af~ 500 (943)
.+ + .... .. .+|.+++++||+++...-+.+. +...
T Consensus 200 -~~--~----------------------------------~~~~----~~-~~d~~~~s~~K~~gp~G~G~l~~~~~~~~ 237 (398)
T TIGR03392 200 -HG--P----------------------------------PDVQ----AL-DIDFYAFSGHKLYGPTGIGVLYGKTELLE 237 (398)
T ss_pred -CC--C----------------------------------CChh----hc-CCCEEEEecccccCCCceEEEEEcHHHHh
Confidence 22 1 0111 11 4799999999977732222110 0011
Q ss_pred cCccccccCCCCcccccCcccc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccc
Q psy11047 501 VEPLYLRHENSGLAIDYMHWQI-PLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGL 579 (943)
Q Consensus 501 ~~p~YL~~~~~g~~~d~~~~ti-e~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~ 579 (943)
.-+++..........++..+.. +..++|++. +....+..++.+.++.+.+ .|.+.++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~G----T~~~~~~~a~~~al~~l~~---------------~g~~~i~~~- 297 (398)
T TIGR03392 238 AMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAG----TPNIAGVIGLSAALEWLTD---------------IDIAAAEAW- 297 (398)
T ss_pred hCCCeecCCceEeeccccccccCCChhhccCC----CCCHHHHHHHHHHHHHHHH---------------hCHHHHHHH-
Confidence 1112221111000011111221 233444421 3444455555555554311 122222211
Q ss_pred ccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEee
Q psy11047 580 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP 659 (943)
Q Consensus 580 ~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~ 659 (943)
..++++++.+.|.++|++++..++..++++|++++.+ .+.+.++|.++|. .+..
T Consensus 298 -----------------------~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~--~~~l~~~L~~~gI-~v~~ 351 (398)
T TIGR03392 298 -----------------------SVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGVH--HSDLAALLAESGI-ALRA 351 (398)
T ss_pred -----------------------HHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCcC--HHHHHHHHHhCCE-EEec
Confidence 4678999999999999999987778899999987654 4678888888775 3432
Q ss_pred cc---------cCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 660 AS---------LRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 660 t~---------~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
.. +...+++|++.++++|.+||++++++|+++.+.
T Consensus 352 g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 352 GQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred CccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 11 122468999999999999999999999887654
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-19 Score=199.67 Aligned_cols=355 Identities=11% Similarity=0.006 Sum_probs=225.6
Q ss_pred ceeEEccCCCChHHHHHHHHHHHH-----hccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCCh
Q psy11047 193 YMHAYFPALNSYPSLLGDMLSDAI-----NCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTA 267 (943)
Q Consensus 193 rf~g~~~~~~s~~silgd~L~~al-----N~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGG 267 (943)
-|+.+-.+++.+..++. .+...+ |+....+..++.+..+-..+++.+|+++|.++. ...+||+|+
T Consensus 25 iYld~a~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~---------~~v~~t~g~ 94 (406)
T PRK09295 25 AYLDSAASAQKPSQVID-AEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSA---------EELVFVRGT 94 (406)
T ss_pred EEEeCcccccCCHHHHH-HHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCC---------CeEEEeCCH
Confidence 45555544444455543 333333 222233444566667677799999999997422 268999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHH----HHHHCCccEEEEecCCCCCcCHHHHHH
Q psy11047 268 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEK----AGLIGLVNMRYIESDDKLSLRGDKLIE 343 (943)
Q Consensus 268 TeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~K----Aa~LG~~~v~~Vp~D~~grmD~daLe~ 343 (943)
|+++..++.+-....+ .+ .-.|++++.+|.|... .+...+.+++.++.+.++.+|+++|++
T Consensus 95 t~~l~~~~~~~~~~~~------~~---------gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~ 159 (406)
T PRK09295 95 TEGINLVANSWGNSNV------RA---------GDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPA 159 (406)
T ss_pred HHHHHHHHHHhhhhcC------CC---------cCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHH
Confidence 9997766543211000 11 2357888999987533 333334588899998899999999999
Q ss_pred HHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 344 AIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 344 aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++.++ +.+|+.+..++.+|.+.|+++|++ +|+++|+ ++++|++++..
T Consensus 160 ~i~~~------t~lv~l~~~~n~tG~~~~~~~i~~--------------------~~~~~~~-------~vivD~a~~~g 206 (406)
T PRK09295 160 LFDER------TRLLAITHVSNVLGTENPLAEMIA--------------------LAHQHGA-------KVLVDGAQAVM 206 (406)
T ss_pred hcCCC------cEEEEEecchhcccccCCHHHHHH--------------------HHHHcCC-------EEEEEcccccC
Confidence 98653 678889999999999999999999 9999999 99999998655
Q ss_pred CccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh---hhcc
Q psy11047 424 PRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH---RTFN 500 (943)
Q Consensus 424 ~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~---~af~ 500 (943)
.. + .+ +.. ..+|.+++++||+++...-+.+. +...
T Consensus 207 -~~--~---------------------------------~~-----~~~-~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~ 244 (406)
T PRK09295 207 -HH--P---------------------------------VD-----VQA-LDCDFYVFSGHKLYGPTGIGILYVKEALLQ 244 (406)
T ss_pred -cc--c---------------------------------cC-----chh-cCCCEEEeehhhccCCCCcEEEEEchHhHh
Confidence 21 1 00 111 25799999999977732211110 0111
Q ss_pred cCccccccCCCCccccc-Ccccc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcc
Q psy11047 501 VEPLYLRHENSGLAIDY-MHWQI-PLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKG 578 (943)
Q Consensus 501 ~~p~YL~~~~~g~~~d~-~~~ti-e~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~ 578 (943)
.-+++..........+. ..+.+ +..+||++. +....+..++.+.++.+.+ .|.+.|+++
T Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~G----T~~~~~~~~l~~al~~~~~---------------~g~~~i~~~ 305 (406)
T PRK09295 245 EMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAG----TPNTGGIIGLGAALDYVSA---------------LGLNNIAEY 305 (406)
T ss_pred hCCCcccCCceeeeeecCCccccCCchhhcCCC----CccHHHHHHHHHHHHHHHH---------------hCHHHHHHH
Confidence 11223222110000011 01111 233445432 4455556666666665321 233333322
Q ss_pred cccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEE
Q psy11047 579 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHC 657 (943)
Q Consensus 579 ~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~ 657 (943)
..+|++++.+.|.+++++++..+ ...++|+|.+++.+ .+.+.+.|.++|. ++
T Consensus 306 ------------------------~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~--~~~~~~~L~~~gI-~v 358 (406)
T PRK09295 306 ------------------------EQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHH--AYDVGSFLDNYGI-AV 358 (406)
T ss_pred ------------------------HHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCcC--HHHHHHHHHhCCe-EE
Confidence 45788999999999999999875 34789999987643 4677778877775 33
Q ss_pred eec---------ccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 658 VPA---------SLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 658 s~t---------~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
..- .....+++|+++++++|++||++++++|+++..
T Consensus 359 ~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 359 RTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred eccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 211 112246899999999999999999999998754
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-19 Score=197.37 Aligned_cols=357 Identities=13% Similarity=0.034 Sum_probs=222.5
Q ss_pred ceeEEccCCCChHHHHHHHHHHHHhcc-----CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCCh
Q psy11047 193 YMHAYFPALNSYPSLLGDMLSDAINCL-----GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTA 267 (943)
Q Consensus 193 rf~g~~~~~~s~~silgd~L~~alN~n-----~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGG 267 (943)
-|+.+-..++.+..++. .+..+++.. ...+..+....++-..+++.+++++|.++. ...+||+|+
T Consensus 21 ~yld~a~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---------~~i~~~~~~ 90 (401)
T PRK10874 21 VYLDSAATALKPQAVIE-ATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDA---------KNIVWTRGT 90 (401)
T ss_pred EEEeCCcccCCCHHHHH-HHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCC---------CEEEEECCH
Confidence 35555555544445443 333343221 122233445566677899999999998422 368899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH----HHHHHHCCccEEEEecCCCCCcCHHHHHH
Q psy11047 268 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV----EKAGLIGLVNMRYIESDDKLSLRGDKLIE 343 (943)
Q Consensus 268 TeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv----~KAa~LG~~~v~~Vp~D~~grmD~daLe~ 343 (943)
|+++..++.+... ..+ .+| -.|++++.+|+|. .+.+...+.+++.|+++.++.+|++++++
T Consensus 91 t~~i~~~~~~~~~---~~~---~~g---------d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~ 155 (401)
T PRK10874 91 TESINLVAQSYAR---PRL---QPG---------DEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPE 155 (401)
T ss_pred HHHHHHHHHHhhh---ccC---CCc---------CEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHH
Confidence 9997665543210 000 122 3578889999874 33343334589999998889999999999
Q ss_pred HHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 344 AIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 344 aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.|+++ +.+|+.+..++.+|.+.|+++|++ +|+++|+ ++++|++++..
T Consensus 156 ~i~~~------t~lv~i~~~~n~tG~~~~~~~i~~--------------------l~~~~g~-------~~ivD~a~~~g 202 (401)
T PRK10874 156 LITPR------TRILALGQMSNVTGGCPDLARAIT--------------------LAHQAGM-------VVMVDGAQGAV 202 (401)
T ss_pred hcCcC------cEEEEEeCCcccccCcCCHHHHHH--------------------HHHHcCC-------EEEEECCcccc
Confidence 99654 678888999999999999999999 9999999 99999999754
Q ss_pred CccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh---hhcc
Q psy11047 424 PRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH---RTFN 500 (943)
Q Consensus 424 ~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~---~af~ 500 (943)
.+ + . . +..+ .+|.+++++||+++.+.-+.+. +...
T Consensus 203 -~~--~---------------------------------~-~----~~~~-~~d~~~~s~~K~~gp~G~G~l~~~~~~~~ 240 (401)
T PRK10874 203 -HF--P---------------------------------A-D----VQAL-DIDFYAFSGHKLYGPTGIGVLYGKSELLE 240 (401)
T ss_pred -cc--c---------------------------------C-C----chhc-CCCEEEEecccccCCCccEEEEEchHHHh
Confidence 22 1 0 0 1111 4799999999977733222210 0001
Q ss_pred cCccccccCCCCcccccCcccc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccc
Q psy11047 501 VEPLYLRHENSGLAIDYMHWQI-PLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGL 579 (943)
Q Consensus 501 ~~p~YL~~~~~g~~~d~~~~ti-e~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~ 579 (943)
.-.++..+.......++..+.. +..++|+.. +....+..++.+.++.+.+ .|...++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~G----t~~~~~~~al~~al~~l~~---------------~g~~~~~~~- 300 (401)
T PRK10874 241 AMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAG----TPNVAGVIGLSAALEWLAD---------------IDINQAESW- 300 (401)
T ss_pred cCCCeecCCcceEeeccCccCCCCChhhccCC----CcCHHHHHHHHHHHHHHHH---------------hCHHHHHHH-
Confidence 1112222111000001111111 122333321 3333444444444443211 112222111
Q ss_pred ccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEee
Q psy11047 580 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP 659 (943)
Q Consensus 580 ~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~ 659 (943)
..++++++.+.|+++|++++..++..++++|++.+.+ .+++.+.|.++|.+..+.
T Consensus 301 -----------------------~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~L~~~gI~v~~g 355 (401)
T PRK10874 301 -----------------------SRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGVH--HSDLVTLLAEYGIALRAG 355 (401)
T ss_pred -----------------------HHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCcC--HHHHHHHHHHCCcEEecc
Confidence 3568889999999999999988888899999987644 467888888888654332
Q ss_pred cc--------cCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 660 AS--------LRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 660 t~--------~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
.. +...+++|+++++++|++||++++++|++++..
T Consensus 356 ~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 356 QHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred ccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 11 122478999999999999999999999987654
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=203.83 Aligned_cols=343 Identities=15% Similarity=0.105 Sum_probs=210.1
Q ss_pred ceeEEccCCCChHHHHHHHHHHHHhccCcc----ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChH
Q psy11047 193 YMHAYFPALNSYPSLLGDMLSDAINCLGFT----WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTAS 268 (943)
Q Consensus 193 rf~g~~~~~~s~~silgd~L~~alN~n~~~----~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGT 268 (943)
-|+.+-.+.+.++.++..+...+.+..+.. +..+..+...-..+++.+++++|.+++ ..+||+|||
T Consensus 5 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~----------~v~~~~g~t 74 (402)
T TIGR02006 5 IYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR----------EIVFTSGAT 74 (402)
T ss_pred EEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC----------eEEEeCCHH
Confidence 455555555555555543333221111111 111222345566788999999998653 589999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-H--CCccEEEEecCCCCCcCHHHHHHHH
Q psy11047 269 ESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-I--GLVNMRYIESDDKLSLRGDKLIEAI 345 (943)
Q Consensus 269 eANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-L--G~~~v~~Vp~D~~grmD~daLe~aI 345 (943)
+++..++.+.+.... . +...|+++..+|.|+.+++. + .+.+++.|+++.++.+|+++|++.|
T Consensus 75 ~a~~~~l~~l~~~~~------~---------~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l 139 (402)
T TIGR02006 75 ESNNLAIKGIAHFYK------S---------KGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAI 139 (402)
T ss_pred HHHHHHHHHHHHhhc------C---------CCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhc
Confidence 999888765432110 1 12357888999999888762 2 2458899999999999999999988
Q ss_pred HHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCc
Q psy11047 346 ERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPR 425 (943)
Q Consensus 346 ~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~a 425 (943)
.++ +.+|+.+..++.+|.+.|+++|.+ +|+++|+ |+|||++++.. .
T Consensus 140 ~~~------~~lv~v~~~~n~tG~~~~~~~I~~--------------------l~~~~g~-------~livD~a~a~g-~ 185 (402)
T TIGR02006 140 RDD------TILVSIMHVNNEIGVIQDIAAIGE--------------------ICRERKV-------FFHVDAAQSVG-K 185 (402)
T ss_pred CCC------CEEEEEECCCcCceecccHHHHHH--------------------HHHHcCC-------EEEEEcchhcC-C
Confidence 653 578888999999999999999999 9999999 99999999765 3
Q ss_pred cccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchh--hhhcccCc
Q psy11047 426 FEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL--HRTFNVEP 503 (943)
Q Consensus 426 feLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L--~~af~~~p 503 (943)
. | .. +.+ ..+|++++++||+++....+.+ .+......
T Consensus 186 ~--~---------------------------------~~-----~~~-~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~ 224 (402)
T TIGR02006 186 I--P---------------------------------IN-----VNE-LKVDLMSISGHKIYGPKGIGALYVRRKPRVRL 224 (402)
T ss_pred c--c---------------------------------cC-----ccc-cCCCEEEEehhhhcCCCceEEEEEccCCCCCC
Confidence 2 1 00 111 2589999999998773222221 00000000
Q ss_pred cccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccccccc
Q psy11047 504 LYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYK 583 (943)
Q Consensus 504 ~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~ 583 (943)
.++..+ +. ..|++++. +....+..++.+.++.+.+ +++.+.++
T Consensus 225 ~~~~~g--~~----------~~~~~~~g----t~~~~~~~al~~al~~~~~----------------~~~~~~~~----- 267 (402)
T TIGR02006 225 EALIHG--GG----------HERGMRSG----TLPTHQIVGMGEAFRIAKE----------------EMAQDTAH----- 267 (402)
T ss_pred CceecC--CC----------ccCCccCC----CccHHHHHHHHHHHHHHHH----------------hHHHHHHH-----
Confidence 111110 00 01223221 2233333444444443211 01111111
Q ss_pred ccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC--Cc-c--EEEEEecCCChHHHHHHHHHhc---cCcE
Q psy11047 584 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR--HL-G--MVVIRLLGENILTEKLLKRLNS---KGRL 655 (943)
Q Consensus 584 i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~--~l-~--iV~Fr~~g~n~l~~~Ll~~L~~---~G~~ 655 (943)
..+|++++.+.|.++|+++++.++ .. + +|+|.. .+ .+.+..+|+. +...
T Consensus 268 -------------------~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~--~~--~~~~~~~l~~i~v~~G~ 324 (402)
T TIGR02006 268 -------------------VLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNY--VE--GESLIMALKDLAVSSGS 324 (402)
T ss_pred -------------------HHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeC--cC--HHHHHHhcCCEEEechh
Confidence 467899999999999999887532 22 3 355553 22 2344444431 1223
Q ss_pred EEeeccc--------------CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 656 HCVPASL--------------RIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 656 ~~s~t~~--------------~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
+|++... ...+++|++++++||++||+++++.|+++.+.+
T Consensus 325 ~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~ 378 (402)
T TIGR02006 325 ACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKL 378 (402)
T ss_pred hcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 4544211 113789999999999999999999999987664
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.4e-20 Score=200.91 Aligned_cols=308 Identities=15% Similarity=0.160 Sum_probs=203.7
Q ss_pred cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhc
Q psy11047 219 LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEI 298 (943)
Q Consensus 219 n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i 298 (943)
....|..+|.+..+|. ++++++|. . .++|+++||+||.+||.+.- + |+
T Consensus 27 ~~~~YG~D~~~~~~e~----~~ae~~g~-~-----------a~~Fv~sGT~aN~lal~~~~----~------~~------ 74 (342)
T COG2008 27 GDDVYGEDPTTNALEQ----RIAELFGK-E-----------AALFVPSGTQANQLALAAHC----Q------PG------ 74 (342)
T ss_pred CCCCCCCCHHHHHHHH----HHHHHhCC-c-----------eEEEecCccHHHHHHHHHhc----C------CC------
Confidence 3567899999998887 56899988 3 48999999999999988642 1 22
Q ss_pred CCceEEEecCCCchHHHHHH---HHCCccEEEEecCCCCCcCHHHHHHHHHHhh-ccCCCcEEEEEecCCCcccccccHH
Q psy11047 299 NSRLVAYCSDQAHSSVEKAG---LIGLVNMRYIESDDKLSLRGDKLIEAIERDK-KKHLIPFFIFSGLALPAFLVVDSYC 374 (943)
Q Consensus 299 ~~~~vV~~S~~aHySv~KAa---~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~-~kG~~P~~VVaTaGTT~tGaIDpL~ 374 (943)
-.|+|.+.+|....+++ .+|.+..+.+....+|.|++++++..|..+. +....|.++.-|.-| +.|.+-|++
T Consensus 75 ---~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~t-e~GtVy~l~ 150 (342)
T COG2008 75 ---ESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTAT-EGGTVYPLD 150 (342)
T ss_pred ---CeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccC-CCceecCHH
Confidence 24889999999999976 3666655555556899999999999998643 444556666666555 889998877
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHH
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKR 454 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~ 454 (943)
+|.+ +..+|+++|+ .+|+|||--+. +. +.+|
T Consensus 151 el~~-----------------i~~~~k~~~l-------~LHmDGAR~~n-A~-----valg------------------- 181 (342)
T COG2008 151 ELEA-----------------ISAVCKEHGL-------PLHMDGARLAN-AL-----VALG------------------- 181 (342)
T ss_pred HHHH-----------------HHHHHHHhCC-------ceeechHHHHH-HH-----HHcC-------------------
Confidence 6655 2339999999 99999995443 21 0111
Q ss_pred hhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh--hhcccCccccccCCCCcccccCccccCCCCCcchHH
Q psy11047 455 LNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH--RTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALK 532 (943)
Q Consensus 455 l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~--~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALk 532 (943)
+....+- .++||++|++.|.|+..-.+.+. ..|..+..|...... ++-|..+-
T Consensus 182 ---------~~~~~~~---~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK~~G-----------gl~~k~r~-- 236 (342)
T COG2008 182 ---------VALKTIK---SYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKRAG-----------GLMRKARF-- 236 (342)
T ss_pred ---------CCHHHHH---hhCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHHHHhc-----------ccHhhhhH--
Confidence 1112222 46799999999999955444331 111112223221100 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHH
Q psy11047 533 LWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEA 612 (943)
Q Consensus 533 lW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~ 612 (943)
+..-+..-|++.+ |+.-..|..++|+++++
T Consensus 237 ----laA~~~~~l~~~~----------------------------------------------~~~~~~Han~mA~~La~ 266 (342)
T COG2008 237 ----LAAQGLYALEDDV----------------------------------------------WRLAADHANAMAARLAE 266 (342)
T ss_pred ----HHHHHHHHHhccH----------------------------------------------HHHHHHHHHHHHHHHHH
Confidence 1111111222222 22223335788999999
Q ss_pred HHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCC-cEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 613 LVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQ-GLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 613 ~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~-~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
.+.+.|++++..|++.|+|..+++. ...+.+...|+++...--.... ..+||++|+.|+++||++++..++++
T Consensus 267 ~~~~~~G~~~~~~~~tN~vf~~l~~------~~i~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~ 340 (342)
T COG2008 267 GLEAKPGVKLAFPVETNMVFVRLPE------SAIEALRLAGALFYRGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKAL 340 (342)
T ss_pred hhhhcCCceeccCCcccEEEEECCh------HHHHHHHhhchhheeeeeccCCCceEEEEeeccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999863 2235566666544332111122 48999999999999999999998876
Q ss_pred H
Q psy11047 692 A 692 (943)
Q Consensus 692 ~ 692 (943)
.
T Consensus 341 ~ 341 (342)
T COG2008 341 L 341 (342)
T ss_pred h
Confidence 4
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.1e-18 Score=191.67 Aligned_cols=323 Identities=14% Similarity=0.092 Sum_probs=210.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
.....+-..+++.+++++|.++. ...+||+|+|+++..++.... +..+ .+ ...|++
T Consensus 72 ~~~~~~~~~~r~~la~~~~~~~~---------~~v~~t~g~t~al~~i~~~~~---~~~~---~~---------gd~vl~ 127 (424)
T PLN02855 72 AKATDAYELARKKVAAFINASTS---------REIVFTRNATEAINLVAYTWG---LANL---KP---------GDEVIL 127 (424)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC---------CEEEEeCCHHHHHHHHHHHhh---hhcC---CC---------cCEEEE
Confidence 34445556788999999998532 268999999999765543210 0000 11 235788
Q ss_pred cCCCchHHHHH----HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 307 SDQAHSSVEKA----GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 307 S~~aHySv~KA----a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
+..+|.|...+ +...+.+++.++++.++.+|++++++.|+.+ +.+|+.+..++.+|.+.|+++|++
T Consensus 128 ~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~------t~lv~i~~~~n~tG~~~~~~~I~~---- 197 (424)
T PLN02855 128 SVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSEK------TKLVATHHVSNVLGSILPVEDIVH---- 197 (424)
T ss_pred CCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhccC------ceEEEEeCccccccccCCHHHHHH----
Confidence 88999875443 2233358889999888889999999999653 678899999999999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+|+++|+ ++++|++++.. .. +
T Consensus 198 ----------------l~~~~g~-------~vivD~a~~~g-~~--~--------------------------------- 218 (424)
T PLN02855 198 ----------------WAHAVGA-------KVLVDACQSVP-HM--P--------------------------------- 218 (424)
T ss_pred ----------------HHHHcCC-------EEEEEhhhhcC-Cc--C---------------------------------
Confidence 9999999 99999999654 21 1
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccCccCcchhh---hhcccCccccccCCCCcc-c-ccCccccCCCCCcchHHHHHHH
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH---RTFNVEPLYLRHENSGLA-I-DYMHWQIPLSKRFRALKLWFVI 537 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~---~af~~~p~YL~~~~~g~~-~-d~~~~tie~SRrfrALklW~tL 537 (943)
.+ +... .+|.+++++||+++...-+.+. +....-++++.+...... + +...+ .+..+||+.. +.
T Consensus 219 ~~-----~~~~-~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-~~~~~r~e~G----T~ 287 (424)
T PLN02855 219 VD-----VQTL-GADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTY-APPPSRFEAG----TP 287 (424)
T ss_pred CC-----chhc-CCCEEEeecccccCCCccEEEEEchhhhhcCCCEecCCCceeeeecCcccc-CCChhhccCC----Ch
Confidence 00 1111 4699999999977632211110 000111223221110000 0 00001 1223455432 45
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCC
Q psy11047 538 RNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 617 (943)
Q Consensus 538 r~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~ 617 (943)
...+..++.+.++.+.+ .|++.|+++ ..+|++++.+.|+++
T Consensus 288 ~~~~~~~l~~al~~~~~---------------~g~~~i~~~------------------------~~~l~~~l~~~L~~~ 328 (424)
T PLN02855 288 AIGEAIGLGAAIDYLSE---------------IGMDRIHEY------------------------EVELGTYLYEKLSSV 328 (424)
T ss_pred HHHHHHHHHHHHHHHHH---------------hCHHHHHHH------------------------HHHHHHHHHHHHhcC
Confidence 56666666666665321 244444332 467899999999999
Q ss_pred CCeEEecCC------CccEEEEEecCCChHHHHHHHHHhcc-CcEEEeecc---------cCCCcEEEEeecCCCCHHHH
Q psy11047 618 PRFEIPAAR------HLGMVVIRLLGENILTEKLLKRLNSK-GRLHCVPAS---------LRIQGLGRAQNFTRTTNDDI 681 (943)
Q Consensus 618 p~~eIl~~~------~l~iV~Fr~~g~n~l~~~Ll~~L~~~-G~~~~s~t~---------~~g~~~lR~v~~~~tt~edI 681 (943)
|+++++.+. ..++|+|++.+.+ .+.+.+.|.++ |. .+.... +.-..++|+++++++|++||
T Consensus 329 ~g~~i~~~~~~~~~~r~~~v~~~~~~~~--~~~v~~~L~~~~gI-~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di 405 (424)
T PLN02855 329 PGVRIYGPKPSEGVGRAALCAFNVEGIH--PTDLSTFLDQQHGV-AIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEV 405 (424)
T ss_pred CCEEEeCCCcccccCcccEEEEEECCcC--HHHHHHHhcccCCE-EEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHH
Confidence 999998642 3689999997643 46788888777 64 333211 11246899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy11047 682 TRDWNEIRNTATEI 695 (943)
Q Consensus 682 d~ll~~I~~~~~~l 695 (943)
++++++|+++...+
T Consensus 406 ~~l~~~l~~~~~~~ 419 (424)
T PLN02855 406 DAFIHALKDTIAFF 419 (424)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987663
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-18 Score=186.40 Aligned_cols=310 Identities=16% Similarity=0.124 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
......+.+++++++|.+.. ...+||+|||+++..++.+- + .+ .-.|+++..
T Consensus 43 ~~~~~~~~~~la~~~~~~~~---------~~v~~~~g~t~al~~~~~~~----~------~~---------gd~vl~~~~ 94 (376)
T TIGR01977 43 SREVEETRQLLAKLFNAPSS---------AHVVFTNNATTALNIALKGL----L------KE---------GDHVITTPM 94 (376)
T ss_pred HHHHHHHHHHHHHHhCcCCC---------CeEEEeCCHHHHHHHHHHhc----c------CC---------CCEEEECcc
Confidence 45556788899999998643 25789999999987665431 1 11 234777888
Q ss_pred CchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccc
Q psy11047 310 AHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGL 385 (943)
Q Consensus 310 aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~ 385 (943)
+|.++..+. ...+..++.++.+.++.+|+++++++++++ +.+|+.+..++.+|.+.|+++|.+
T Consensus 95 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~------~~~v~~~~~~n~tG~~~~~~~i~~------- 161 (376)
T TIGR01977 95 EHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTN------TKLIVVSHASNVTGTILPIEEIGE------- 161 (376)
T ss_pred hhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCC------CeEEEEECCCCCccccCCHHHHHH-------
Confidence 999876543 222458888998888999999999998643 678889999999999999999999
Q ss_pred ccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccc
Q psy11047 386 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP 465 (943)
Q Consensus 386 ~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~ 465 (943)
+|+++|+ ++++|+|++.+ .. + ..
T Consensus 162 -------------l~~~~~~-------~livD~a~~~g-~~--~---------------------------------~~- 184 (376)
T TIGR01977 162 -------------LAQENGI-------FFILDAAQTAG-VI--P---------------------------------ID- 184 (376)
T ss_pred -------------HHHHcCC-------EEEEEhhhccC-cc--C---------------------------------CC-
Confidence 9999999 99999999766 22 1 00
Q ss_pred hhhhhcCCCCeeEEEEcCCCccCccCc-chh--hhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH
Q psy11047 466 ASLRIQGLGRAQNFTIVPSSLLRVKNS-GAL--HRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI 542 (943)
Q Consensus 466 ~r~~l~Gie~ADSItiDpHK~L~vr~~-~~L--~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~ 542 (943)
.. -..+|++++++|||++.+.. +.+ .+.....+ +.. ...+....+.+..-...+|++.. +....+.
T Consensus 185 ~~-----~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~r~~~~----t~~~~~~ 253 (376)
T TIGR01977 185 MT-----ELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKP-LKS-GGTGSHSALIDQPSELPDRFESG----TLNTPGI 253 (376)
T ss_pred ch-----hcCCCEEEecccccccCCCCceEEEEcCCcCcCc-eec-CCCccccccccccccchhhccCC----CCCHHHH
Confidence 00 13689999999999873221 111 00000011 111 00000000000000111223210 1222222
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEE
Q psy11047 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI 622 (943)
Q Consensus 543 ~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eI 622 (943)
.++.+.++.+.+ .|.+.++++ ..++++++.+.|.+.+++++
T Consensus 254 ~a~~~al~~~~~---------------~g~~~~~~~------------------------~~~l~~~~~~~l~~~~~~~~ 294 (376)
T TIGR01977 254 AGLNAGIKFIEK---------------IGIANIAKK------------------------ECMLTEKLLNGLREINKVKI 294 (376)
T ss_pred HHHHHHHHHHHH---------------hCHHHHHHH------------------------HHHHHHHHHHHHhcCCCeEE
Confidence 333333333211 122222221 46789999999999999999
Q ss_pred ecCC----CccEEEEEecCCChHHHHHHHHHhcc-CcEEEeecc-----------cCCCcEEEEeecCCCCHHHHHHHHH
Q psy11047 623 PAAR----HLGMVVIRLLGENILTEKLLKRLNSK-GRLHCVPAS-----------LRIQGLGRAQNFTRTTNDDITRDWN 686 (943)
Q Consensus 623 l~~~----~l~iV~Fr~~g~n~l~~~Ll~~L~~~-G~~~~s~t~-----------~~g~~~lR~v~~~~tt~edId~ll~ 686 (943)
+.+. ..++++|++.+.+ ...+.+.|.++ |. ++.... ....+.+|++++.++|.+||+++++
T Consensus 295 ~~~~~~~~~~~~v~~~~~~~~--~~~~~~~L~~~~gi-~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~ 371 (376)
T TIGR01977 295 YGPADPANRVGVVSFTVEGID--SEEVADILDEKFDI-ATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLE 371 (376)
T ss_pred eCCCCccccCCeEEEEECCCC--HHHHHHHHhccCCE-EEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHH
Confidence 8642 4789999997654 46788888877 53 332110 1134689999999999999999999
Q ss_pred HHHH
Q psy11047 687 EIRN 690 (943)
Q Consensus 687 ~I~~ 690 (943)
.|++
T Consensus 372 ~l~~ 375 (376)
T TIGR01977 372 ALSE 375 (376)
T ss_pred HHhh
Confidence 9875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-18 Score=190.09 Aligned_cols=315 Identities=16% Similarity=0.101 Sum_probs=205.8
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 221 FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 221 ~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
..+..+....++-..+.+.+++++|.+++ ...+||+|+|+++..++...+... . +
T Consensus 33 ~~~~~~~~~~~~~~~~r~~la~~lg~~~~---------~~v~~~~~~t~a~~~~~~~l~~~~-------~---------~ 87 (371)
T PF00266_consen 33 GVSHRSREFAEILEEAREALAKLLGAPPD---------EEVVFTSNGTEALNAVASSLLNPL-------K---------P 87 (371)
T ss_dssp SSSTTSHHHHHHHHHHHHHHHHHHTSSTT---------EEEEEESSHHHHHHHHHHHHHHHG-------T---------T
T ss_pred cccchhhhhhHHHHHHHHHHHHhcCCccc---------cccccccccchhhhhhhhcccccc-------c---------c
Confidence 44555666667777899999999999873 257899999998877776653221 1 2
Q ss_pred ceEEEecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHh
Q psy11047 301 RLVAYCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCL 376 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eI 376 (943)
...|+++...|+|...++ ...+.+++.|+.+.++.+|+++++++|..+ +.+|+.++..+.+|...|+++|
T Consensus 88 g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~------~~lv~~~~~~~~tG~~~pi~~I 161 (371)
T PF00266_consen 88 GDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPD------TRLVSISHVENSTGVRNPIEEI 161 (371)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTT------ESEEEEESBETTTTBBSSHHHH
T ss_pred ccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhccc------cceEEeecccccccEEeeecee
Confidence 235788899999987554 234568999999999999999999999755 7799999999999999999999
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhh
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLN 456 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~ 456 (943)
++ +|+++|. +++|||+++.+ ..++
T Consensus 162 ~~--------------------~~~~~~~-------~~~vD~~~~~g-~~~i---------------------------- 185 (371)
T PF00266_consen 162 AK--------------------LAHEYGA-------LLVVDAAQSAG-CVPI---------------------------- 185 (371)
T ss_dssp HH--------------------HHHHTTS-------EEEEE-TTTTT-TSS-----------------------------
T ss_pred hh--------------------hhhccCC-------ceeEechhccc-cccc----------------------------
Confidence 99 9999999 99999999876 3211
Q ss_pred ccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchh------hhhcccCccccccCCCCcccccCcccc-CCCCCcc
Q psy11047 457 SKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL------HRTFNVEPLYLRHENSGLAIDYMHWQI-PLSKRFR 529 (943)
Q Consensus 457 ~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L------~~af~~~p~YL~~~~~g~~~d~~~~ti-e~SRrfr 529 (943)
. ++. -.+|.+++++||+++.+.-+.| ...+ .|...... .........++. +..+++.
T Consensus 186 -----d-------~~~-~~~D~~~~s~~Kl~gp~G~g~l~v~~~~~~~~--~p~~~~~~-~~~~~~~~~~~~~~~~~~~~ 249 (371)
T PF00266_consen 186 -----D-------LDE-LGADFLVFSSHKLGGPPGLGFLYVRPEAIERL--RPAKPGGG-YLDFPSLQEYGLADDARRFE 249 (371)
T ss_dssp -------------TTT-TTESEEEEESTSTTSSSTEEEEEEEHHHHHHH--HTSSSSSS-TTTHHHHHHHCHHSTTTGSS
T ss_pred -----c-------ccc-cccceeeecccccCCCCchhhheehhhhhhcc--cccccccc-ccccccchhccccccccccc
Confidence 1 111 2689999999995552221111 1111 11111111 000001111111 1222332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHH
Q psy11047 530 ALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQK 609 (943)
Q Consensus 530 ALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~ 609 (943)
+. +....+..++...++.+.+ .|++.|+++ ..+++++
T Consensus 250 ~G----T~~~~~~~~l~~al~~~~~---------------~g~~~i~~~------------------------~~~l~~~ 286 (371)
T PF00266_consen 250 GG----TPNVPAIYALNEALKLLEE---------------IGIERIRER------------------------IRELAEY 286 (371)
T ss_dssp SS----S--HHHHHHHHHHHHHHHH---------------HHHHHHHHH------------------------HHHHHHH
T ss_pred cc----ceeeehhhhHHHHHhhhhc---------------cccccchhh------------------------hhhHHHH
Confidence 11 2223333333334433211 233333322 4678999
Q ss_pred HHHHHhCCCCeEEecC----CCccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc---------CCCcEEEEeecCCC
Q psy11047 610 FEALVLGDPRFEIPAA----RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL---------RIQGLGRAQNFTRT 676 (943)
Q Consensus 610 l~~~L~~~p~~eIl~~----~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~---------~g~~~lR~v~~~~t 676 (943)
+.+.|.+.++++++.+ ...++++|.+.+.+ ...+.+.|.++|. .++.... .-.+++|+++++++
T Consensus 287 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~L~~~~I-~~~~G~~~~~~~~~~~~~~~~iRvS~~~~n 363 (371)
T PF00266_consen 287 LREALEELPGIEVLGPDDEPRRPSIVSFNLPGSD--ADDVVKYLEERGI-AVSTGSACAGPSLDILGMGGVIRVSLHYYN 363 (371)
T ss_dssp HHHHHHHTTTEEESSSSCGGBGTTEEEEEETTSS--HHHHHHHHHHHTE-EEEESTTTCHHHHHHHHTTTEEEEE-GTTS
T ss_pred HHhhhhcCCceeEeeecccccccceEEEeecCCC--HHHHHHHHhhcCE-EEeccCcccHHHHHHhCCCCEEEEeccCCC
Confidence 9999999999999763 35899999997765 3788888888864 4443111 12379999999999
Q ss_pred CHHHHHHH
Q psy11047 677 TNDDITRD 684 (943)
Q Consensus 677 t~edId~l 684 (943)
|++||+++
T Consensus 364 t~~dv~~l 371 (371)
T PF00266_consen 364 TEEDVDRL 371 (371)
T ss_dssp SHHHHHHH
T ss_pred CHHHHhhC
Confidence 99999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-17 Score=183.50 Aligned_cols=307 Identities=14% Similarity=0.097 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 232 LEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 232 LE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
.-++.+..+++.+|..+. ...+||+|+|+++..++.+.....+. .+ ++..|+++..+|
T Consensus 43 ~l~~a~~~~~~~~~~~~~---------~~i~~t~g~teal~~~~~~~~~~~~~-----~~--------~~~~vi~~~~e~ 100 (382)
T TIGR03403 43 AIAEALDKLYKGINARDL---------DDIIITSCATESNNWVLKGVYFDEIL-----KG--------GKNHIITTEVEH 100 (382)
T ss_pred HHHHHHHHHHHHcCcCCC---------CeEEEeCCHHHHHHHHHHHHHHhhcc-----cC--------CCCEEEEcCCcc
Confidence 334455566667776322 26899999999998877654211000 01 123578899999
Q ss_pred hHHHHHHH---HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccc
Q psy11047 312 SSVEKAGL---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388 (943)
Q Consensus 312 ySv~KAa~---LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~ 388 (943)
.|+..+.. ..+.+++.||++++|.+|+++|+++++.+ +.+++.+..++.+|.+.|+++|.+
T Consensus 101 ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~~------t~lv~~~~~~n~tG~~~~~~~I~~---------- 164 (382)
T TIGR03403 101 PAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITEK------TALVSVMWANNETGMIFPIKEIGE---------- 164 (382)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhcccC------CeEEEEEcccCCCccccCHHHHHH----------
Confidence 99887752 23458999999989999999999998754 567888899999999999999999
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhh
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL 468 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~ 468 (943)
+|+++|+ |+|+|++++.+ .. | ++ ..
T Consensus 165 ----------la~~~g~-------~~ivD~a~~~g-~~--~---------------------------------~~-~~- 189 (382)
T TIGR03403 165 ----------ICKERGV-------LFHTDAVQAIG-KI--P---------------------------------VD-VQ- 189 (382)
T ss_pred ----------HHHHcCC-------EEEEechhhcC-CC--c---------------------------------cC-cc-
Confidence 9999999 99999998755 22 1 11 00
Q ss_pred hhcCCCCeeEEEEcCCCccCccCcchh--hhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHH
Q psy11047 469 RIQGLGRAQNFTIVPSSLLRVKNSGAL--HRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQ 546 (943)
Q Consensus 469 ~l~Gie~ADSItiDpHK~L~vr~~~~L--~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~ 546 (943)
. ..+|.+++++|||++.+.-+.+ +..+...| ++... . ... ++++ .+....+..++.
T Consensus 190 ---~-~~~D~~~~s~~K~~gp~G~g~l~vr~~~~~~p-~~~g~---~-------~~~---~~~~----gt~~~~~~~al~ 247 (382)
T TIGR03403 190 ---K-AGVDFLSFSAHKFHGPKGVGGLYIRKGVELTP-LFHGG---E-------HMG---GRRS----GTLNVPYIVAMG 247 (382)
T ss_pred ---c-cCCCEEEEcchhhCCCCceEEEEECCCCCCCC-cccCC---C-------CCC---Cccc----CCcChHHHHHHH
Confidence 1 2579999999999774332222 11111112 11100 0 001 1111 133444444555
Q ss_pred HHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC
Q psy11047 547 KHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR 626 (943)
Q Consensus 547 ~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~ 626 (943)
+.++...+ +++.+.+ +..++++++.+.|.++|+++++.+.
T Consensus 248 ~al~~~~~----------------~~~~~~~------------------------~~~~l~~~l~~~L~~~~~~~~~~~~ 287 (382)
T TIGR03403 248 EAMRLANE----------------YLDFEKS------------------------HVRRLRDRLEDALLELPDVFVVGDR 287 (382)
T ss_pred HHHHHHHH----------------hHHHHHH------------------------HHHHHHHHHHHHHhcCCCEEEECCC
Confidence 55544211 0111111 1457888999999999999998753
Q ss_pred ---CccEEEEEecCCChHHHHHHHHHhccCcEEEee--c---cc---------C-----CCcEEEEeecCCCCHHHHHHH
Q psy11047 627 ---HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP--A---SL---------R-----IQGLGRAQNFTRTTNDDITRD 684 (943)
Q Consensus 627 ---~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~--t---~~---------~-----g~~~lR~v~~~~tt~edId~l 684 (943)
..++++|.+++.+ .+.+...|.++|...-+. + .+ . ..+++|+++++++|++||+++
T Consensus 288 ~~~~~~~~~~~~~~~~--~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~ 365 (382)
T TIGR03403 288 EHRVPNTILISIKGVE--GEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYT 365 (382)
T ss_pred CCCcCCEEEEEeCCCC--HHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHH
Confidence 2578899987644 467777787777533211 1 11 0 136899999999999999999
Q ss_pred HHHHHHHHHHH
Q psy11047 685 WNEIRNTATEI 695 (943)
Q Consensus 685 l~~I~~~~~~l 695 (943)
+++|+++.+++
T Consensus 366 ~~~l~~~~~~~ 376 (382)
T TIGR03403 366 IEVFKKAVQRL 376 (382)
T ss_pred HHHHHHHHHHH
Confidence 99999876664
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=188.43 Aligned_cols=301 Identities=15% Similarity=0.099 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
-..+.+++++++|.+.+ ..+||+|||+++..++.+...... .+ ...|+++..+|+
T Consensus 51 ~~~~r~~ia~~~g~~~~----------~v~~~~g~t~al~~~l~~l~~~~~------~~---------gd~Vi~~~~~~~ 105 (404)
T PRK14012 51 VDIARNQIADLIGADPR----------EIVFTSGATESDNLAIKGAAHFYQ------KK---------GKHIITSKTEHK 105 (404)
T ss_pred HHHHHHHHHHHcCcCcC----------eEEEeCCHHHHHHHHHHHHHHhhc------CC---------CCEEEEecCccH
Confidence 33577899999998653 589999999999888876532211 11 234778899999
Q ss_pred HHHHHHH-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccc
Q psy11047 313 SVEKAGL-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 313 Sv~KAa~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~ 389 (943)
|+..++. + .+.+++.|+++.+|.+|+++|+++|+++ +.+|+.+..++.+|.+.|+++|.+
T Consensus 106 s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~------t~lv~~~~~~n~tG~~~~~~~I~~----------- 168 (404)
T PRK14012 106 AVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDD------TILVSIMHVNNEIGVIQDIAAIGE----------- 168 (404)
T ss_pred HHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCC------CEEEEEECcCCCccchhhHHHHHH-----------
Confidence 9877763 2 2447889999999999999999999754 568889999999999999999999
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhh
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR 469 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~ 469 (943)
+|+++|+ ++|+|+|++.. .. + .+
T Consensus 169 ---------la~~~g~-------~vivD~a~~~g-~~--~---------------------------------~~----- 191 (404)
T PRK14012 169 ---------ICRERGI-------IFHVDAAQSVG-KV--P---------------------------------ID----- 191 (404)
T ss_pred ---------HHHHcCC-------EEEEEcchhcC-Cc--c---------------------------------cC-----
Confidence 9999999 99999999765 22 1 01
Q ss_pred hcCCCCeeEEEEcCCCccCccCcchh-hh-h--cccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHH
Q psy11047 470 IQGLGRAQNFTIVPSSLLRVKNSGAL-HR-T--FNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGL 545 (943)
Q Consensus 470 l~Gie~ADSItiDpHK~L~vr~~~~L-~~-a--f~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl 545 (943)
+.. ..+|.+++++||+++....+.+ .. . ....+.+.+. + . .+++++. +....+.-|+
T Consensus 192 ~~~-~~~D~~~~s~~K~~gp~g~G~l~~~~~~~~~~~~~~~g~---~---------~--~~~~~~g----t~~~~~~~~l 252 (404)
T PRK14012 192 LSK-LKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGG---G---------H--ERGMRSG----TLPTHQIVGM 252 (404)
T ss_pred ccc-CCCCEEEEehhhccCCCceEEEEEecCCCCCCCceecCC---C---------c--cCCccCC----CcCHHHHHHH
Confidence 011 2579999999998763321221 00 0 0111111100 0 0 1122211 0111112233
Q ss_pred HHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC
Q psy11047 546 QKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA 625 (943)
Q Consensus 546 ~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~ 625 (943)
.+.++.+.. +...+.++ ..++++++.+.|++.|++.+..+
T Consensus 253 ~~al~~~~~----------------~~~~~~~~------------------------~~~l~~~l~~~L~~~~~i~~~~~ 292 (404)
T PRK14012 253 GEAARIAKE----------------EMATENER------------------------IRALRDRLWNGIKDIEEVYLNGD 292 (404)
T ss_pred HHHHHHHHh----------------hHHHHHHH------------------------HHHHHHHHHHHHhcCCCEEEeCC
Confidence 333333110 01111111 46788999999999998887643
Q ss_pred C-----CccEEEEEecCCChHHHHHHHHHhcc---CcEEEeeccc--------------CCCcEEEEeecCCCCHHHHHH
Q psy11047 626 R-----HLGMVVIRLLGENILTEKLLKRLNSK---GRLHCVPASL--------------RIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 626 ~-----~l~iV~Fr~~g~n~l~~~Ll~~L~~~---G~~~~s~t~~--------------~g~~~lR~v~~~~tt~edId~ 683 (943)
. ....++|.+.+. ..+...|... ...+|.+... ...+++|+++++.+|++||++
T Consensus 293 ~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~ 368 (404)
T PRK14012 293 LEQRVPGNLNVSFNYVEG----ESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDY 368 (404)
T ss_pred ccccCCCEEEEEEeCcCH----HHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHH
Confidence 1 222466665432 3444444321 1123333211 124689999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy11047 684 DWNEIRNTATEI 695 (943)
Q Consensus 684 ll~~I~~~~~~l 695 (943)
+++.|+++.+.+
T Consensus 369 ~~~~l~~~~~~~ 380 (404)
T PRK14012 369 AIELVRKSIGKL 380 (404)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-17 Score=182.67 Aligned_cols=308 Identities=15% Similarity=0.047 Sum_probs=196.3
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
+....++...+.+++++++|.+.. ..+++.+||.+...++.+++.. ++ +.-.|+
T Consensus 59 ~~g~~~~~~~~~~~la~~~g~~~~----------~v~~~~~g~~~~~~~~~~~~~~---------~~-------~gd~Vl 112 (398)
T cd00613 59 SQGRLQALFELQTMLCELTGMDVA----------NASLQDEATAAAEAAGLAAIRA---------YH-------KRNKVL 112 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcc----------ceeccCchHHHHHHHHHHHHhc---------cc-------CCCEEE
Confidence 455667888999999999998643 3567776665555555554321 10 123477
Q ss_pred ecCCCchHHHHHHH-HC---CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccH-HHhhhhc
Q psy11047 306 CSDQAHSSVEKAGL-IG---LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSY-CCLGTAM 380 (943)
Q Consensus 306 ~S~~aHySv~KAa~-LG---~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL-~eIa~~~ 380 (943)
+++..|.+...++. +| +.+++.++.++++.+|+++|++++..+ +.+|+.+..+ .+|.+.|+ ++|++
T Consensus 113 ~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------t~~viv~~~~-~~G~~~~~l~~i~~-- 183 (398)
T cd00613 113 VPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEE------VAALMVQYPN-TLGVFEDLIKEIAD-- 183 (398)
T ss_pred EcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCC------eEEEEEECCC-CCceecchHHHHHH--
Confidence 88999999888774 44 247888998878899999999988643 5677777765 57999885 99999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCc
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGR 460 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~ 460 (943)
+|++||+ |+++|+++++. ..
T Consensus 184 ------------------la~~~g~-------~livD~~~~~~-~~---------------------------------- 203 (398)
T cd00613 184 ------------------IAHSAGA-------LVYVDGDNLNL-TG---------------------------------- 203 (398)
T ss_pred ------------------HHHhcCC-------EEEEEeccccc-cC----------------------------------
Confidence 9999999 99999987654 11
Q ss_pred ccccchhhhhcCCCCeeEEEEcCCCccC------------ccCcchhhhhcccCccccccCCCCc-c--cccC----ccc
Q psy11047 461 LHCVPASLRIQGLGRAQNFTIVPSSLLR------------VKNSGALHRTFNVEPLYLRHENSGL-A--IDYM----HWQ 521 (943)
Q Consensus 461 ~~~p~~r~~l~Gie~ADSItiDpHK~L~------------vr~~~~L~~af~~~p~YL~~~~~g~-~--~d~~----~~t 521 (943)
.... +-..+|+++.++|||+. +.++. +...+.....+......+. . .++. .+.
T Consensus 204 -~~~~------~~~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 275 (398)
T cd00613 204 -LKPP------GEYGADIVVGNLQKTGVPHGGGGPGAGFFAVKKE-LVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIR 275 (398)
T ss_pred -CCCh------HHcCCCEEEeeccccCCCCCCCCCceeEEEEhhh-hHhhCCCCeeccccccCCCcceEEecccchhhcc
Confidence 0111 01257999999999971 11111 1111110000000000000 0 0000 000
Q ss_pred cCCCC-------CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccc
Q psy11047 522 IPLSK-------RFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFI 594 (943)
Q Consensus 522 ie~SR-------rfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~ 594 (943)
.+.+. ...+...|.++..++..|+.+..++
T Consensus 276 ~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~------------------------------------------- 312 (398)
T cd00613 276 REKATSNICTGQALLALMAAMYIVYLGPEGLKEIAER------------------------------------------- 312 (398)
T ss_pred cccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHH-------------------------------------------
Confidence 00011 1233466777787888888776666
Q ss_pred cccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCC-ChHHHHHHHHHhccCcEEEeecccCCCcEEEEeec
Q psy11047 595 LSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE-NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNF 673 (943)
Q Consensus 595 ~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~-n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~ 673 (943)
..++++++.+.|++++.......+..++++|++.+. +....++.++|.++|.+ +....+.+...+|++.+
T Consensus 313 --------~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~-~~~~~~~~~~~lRis~~ 383 (398)
T cd00613 313 --------AHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFH-APTMYLPVDGTLMIEPT 383 (398)
T ss_pred --------HHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCcc-ccccccCCCCeEEEEcC
Confidence 346788888888887765533344567788888642 22357788888888864 33222345679999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy11047 674 TRTTNDDITRDWNEI 688 (943)
Q Consensus 674 ~~tt~edId~ll~~I 688 (943)
.++|++||+++++.|
T Consensus 384 ~~~t~edid~~~~~L 398 (398)
T cd00613 384 ETETKEELDALLEAL 398 (398)
T ss_pred CCCCHHHHHHHHHhC
Confidence 999999999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-16 Score=177.89 Aligned_cols=315 Identities=14% Similarity=0.098 Sum_probs=202.2
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 221 FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 221 ~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
..+..+.....+...+.+++++++|.+++ ..+||+|+|++|..++.+...... . +
T Consensus 33 ~~~~~~~~~~~~~~~~r~~la~~~g~~~~----------~i~~~~g~t~a~~~~~~~~~~~~~------~---------~ 87 (381)
T PRK02948 33 SLHDIGGTASSLLQVCRKTFAEMIGGEEQ----------GIYFTSGGTESNYLAIQSLLNALP------Q---------N 87 (381)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCC----------eEEEeCcHHHHHHHHHHHHHHhcc------C---------C
Confidence 33445566677788899999999998654 688999999999888766532110 0 1
Q ss_pred ceEEEecCCCchHHHHHHH---HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 301 RLVAYCSDQAHSSVEKAGL---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa~---LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
+.+|+++..+|.|+..+.. ..+.+++.++++.+|.+|+++|++.+.++ +.+|+.+..++.+|.+.|+++|.
T Consensus 88 g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~------~~lv~~~~~~n~tG~~~~~~~I~ 161 (381)
T PRK02948 88 KKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITPD------TVLASIQHANSEIGTIQPIAEIG 161 (381)
T ss_pred CCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCC------CEEEEEECCcCCcEeehhHHHHH
Confidence 2357789999999877652 23458899999888999999999988643 67899999999999999999999
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhc
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNS 457 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~ 457 (943)
+ +|+++|+ |+|||++++.. .. +
T Consensus 162 ~--------------------l~~~~~~-------~vivD~~~~~g-~~--~---------------------------- 183 (381)
T PRK02948 162 A--------------------LLKKYNV-------LFHSDCVQTFG-KL--P---------------------------- 183 (381)
T ss_pred H--------------------HHHHcCC-------EEEEEChhhcc-cc--c----------------------------
Confidence 9 9999999 99999886543 21 1
Q ss_pred cCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccc-cccCCCCcccccCccccCCCCCcchHHHHHH
Q psy11047 458 KGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLY-LRHENSGLAIDYMHWQIPLSKRFRALKLWFV 536 (943)
Q Consensus 458 ~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~Y-L~~~~~g~~~d~~~~tie~SRrfrALklW~t 536 (943)
.. +.. ..+|.+++++||+++...-+.+. ..+.. +.....+. ...+++.+. +
T Consensus 184 -----~~-----~~~-~~~d~~~~s~~K~~gp~G~G~l~----~~~~~~~~~~~~~~---------~~~~~~~~~----t 235 (381)
T PRK02948 184 -----ID-----VFE-MGIDSLSVSAHKIYGPKGVGAVY----INPQVRWKPVFPGT---------THEKGFRPG----T 235 (381)
T ss_pred -----cC-----ccc-CCCCEEEecHHhcCCCCcEEEEE----EcCCCCCCCcccCC---------CCCCCcCCC----C
Confidence 00 011 14799999999988743322220 01100 00000000 001122210 2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhC
Q psy11047 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 616 (943)
Q Consensus 537 Lr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~ 616 (943)
....+..++.+.++...+ +.+.++++ ..++++++.+.|++
T Consensus 236 ~~~~~~~a~~~al~~~~~----------------~~~~~~~~------------------------~~~~~~~l~~~L~~ 275 (381)
T PRK02948 236 VNVPGIAAFLTAAENILK----------------NMQEESLR------------------------FKELRSYFLEQIQT 275 (381)
T ss_pred ccHHHHHHHHHHHHHHHH----------------HHHHHHHH------------------------HHHHHHHHHHHHhc
Confidence 333333344444433211 00111111 46688888888887
Q ss_pred CCCeEEe--cC---CCccEEEEEecCCChHHHHHHHHHhccCcEEEeecc----c---------------CCCcEEEEee
Q psy11047 617 DPRFEIP--AA---RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS----L---------------RIQGLGRAQN 672 (943)
Q Consensus 617 ~p~~eIl--~~---~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~----~---------------~g~~~lR~v~ 672 (943)
. ++++. .+ ....++.|.+.+.+ .+.+...|.++|........ + ....++|+++
T Consensus 276 ~-~~~v~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~ 352 (381)
T PRK02948 276 L-PLPIEVEGHSTSCLPHIIGVTIKGIE--GQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSF 352 (381)
T ss_pred C-CCCEEEeCCCccCcCCEEEEEeCCCC--HHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEc
Confidence 7 34433 21 12457889887644 46677778777754322110 1 1246899999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 673 FTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 673 ~~~tt~edId~ll~~I~~~~~~l 695 (943)
++++|++||+++++.|+++.+.+
T Consensus 353 ~~~~t~~di~~l~~~l~~~~~~~ 375 (381)
T PRK02948 353 GQQTTKDQIDTTIHALETIGNQF 375 (381)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876544
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=175.68 Aligned_cols=309 Identities=10% Similarity=-0.010 Sum_probs=196.2
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.+|...++..++.+++++++|.+.. ...++|+|||+|+..++.+. . .+| -.|
T Consensus 26 ~~~~~~~~~~~~~~~la~~~g~~~~---------~~~~~~~~~t~al~~~~~~~----~------~~g---------~~v 77 (356)
T cd06451 26 RSPEFLALMDEILEGLRYVFQTENG---------LTFLLSGSGTGAMEAALSNL----L------EPG---------DKV 77 (356)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCC---------CEEEEecCcHHHHHHHHHHh----C------CCC---------CEE
Confidence 4667778788899999999999543 24789999999987777542 1 122 235
Q ss_pred EecCCCchHH--HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 305 YCSDQAHSSV--EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 305 ~~S~~aHySv--~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
+++...|++. ..++...+.+++.++++.++.+|++++++.++.. .|.+|+.+...+.+|.+.|+++|.+
T Consensus 78 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~-----~~~~v~i~~~~~~~G~~~~~~~i~~---- 148 (356)
T cd06451 78 LVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQH-----DIKAVTLTHNETSTGVLNPLEGIGA---- 148 (356)
T ss_pred EEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhcc-----CCCEEEEeccCCCcccccCHHHHHH----
Confidence 6667788873 3444433348899999888899999999999751 2667888888889999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+|+++|+ ++++|++++.. .. +
T Consensus 149 ----------------~a~~~~~-------~li~D~~~~~g-~~--~--------------------------------- 169 (356)
T cd06451 149 ----------------LAKKHDA-------LLIVDAVSSLG-GE--P--------------------------------- 169 (356)
T ss_pred ----------------HHHhcCC-------EEEEeeehhcc-Cc--c---------------------------------
Confidence 9999999 99999987533 11 0
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccCccCc-ch------hhhhcc----cCccccccCCCCcccccCccc-cC-CCCCc-
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLRVKNS-GA------LHRTFN----VEPLYLRHENSGLAIDYMHWQ-IP-LSKRF- 528 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~vr~~-~~------L~~af~----~~p~YL~~~~~g~~~d~~~~t-ie-~SRrf- 528 (943)
.+.. . ..+|.+..++|||++...+ +. +...+. ....|+.... ..++...+ .. ++-..
T Consensus 170 ~~~~-----~-~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~t~~~~ 240 (356)
T cd06451 170 FRMD-----E-WGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLL---LLKYWGEGYSYPHTPPVN 240 (356)
T ss_pred cccc-----c-cCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHH---HHhhhcccCCCCCCChHH
Confidence 0000 0 1468999999999883221 11 111111 0011110000 00000000 00 01011
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHH
Q psy11047 529 RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 608 (943)
Q Consensus 529 rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~ 608 (943)
....++.+++.+...|+.+..++ ..++++
T Consensus 241 ~~~a~~aal~~l~~~~~~~~~~~---------------------------------------------------~~~~~~ 269 (356)
T cd06451 241 LLYALREALDLILEEGLENRWAR---------------------------------------------------HRRLAK 269 (356)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH---------------------------------------------------HHHHHH
Confidence 11244455555555566555554 346778
Q ss_pred HHHHHHhCCCCeEEecCC--CccEE-EEEecCCChHHHHHHHHHhcc-CcEEEeecc-cCCCcEEEEeecCCCCHHHHHH
Q psy11047 609 KFEALVLGDPRFEIPAAR--HLGMV-VIRLLGENILTEKLLKRLNSK-GRLHCVPAS-LRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 609 ~l~~~L~~~p~~eIl~~~--~l~iV-~Fr~~g~n~l~~~Ll~~L~~~-G~~~~s~t~-~~g~~~lR~v~~~~tt~edId~ 683 (943)
++.+.|.+. ++++..++ ..+++ .+++.+ ......+.++|.++ |. ++++.. .....++|+++++.+|++||++
T Consensus 270 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~gI-~~~~g~~~~~~~~iRis~~~~~~~e~v~~ 346 (356)
T cd06451 270 ALREGLEAL-GLKLLAKPELRSPTVTAVLVPE-GVDGDEVVRRLMKRYNI-EIAGGLGPTAGKVFRIGHMGEATREDVLG 346 (356)
T ss_pred HHHHHHHHc-CCeeccCcccCCCceEEEECCC-CCCHHHHHHHHHHhCCE-EEecccccccCCEEEEecCCCCCHHHHHH
Confidence 888888776 78887543 24555 455542 12256888888887 65 444321 1224599999999999999999
Q ss_pred HHHHHHHHH
Q psy11047 684 DWNEIRNTA 692 (943)
Q Consensus 684 ll~~I~~~~ 692 (943)
++++|+++.
T Consensus 347 ~~~~l~~~~ 355 (356)
T cd06451 347 VLSALEEAL 355 (356)
T ss_pred HHHHHHHHh
Confidence 999998753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-16 Score=173.57 Aligned_cols=312 Identities=11% Similarity=0.032 Sum_probs=192.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
....++...+.+.+++++|.+.. ..++++|+|+++...+.+.... ..+| ..|++
T Consensus 56 ~~~~~~~~~l~~~ia~~~~~~~~----------~v~~~~~~t~~l~~~~~~~~~~-------~~~g---------d~vl~ 109 (397)
T TIGR01976 56 RRADQVVDDAREAVADLLNADPP----------EVVFGANATSLTFLLSRAISRR-------WGPG---------DEVIV 109 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC----------eEEEeCCHHHHHHHHHHHHHhc-------CCCC---------CEEEE
Confidence 34456667889999999998653 4789999999975444332110 0122 34777
Q ss_pred cCCCchHHHHH----HHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 307 SDQAHSSVEKA----GLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 307 S~~aHySv~KA----a~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
++..|+|...+ +...+.+++.++.+. ++.+|++++++.|.++ +.+|+.+..++.+|.+.|+++|++
T Consensus 110 ~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~------~~lv~i~~~~n~tG~~~~~~~i~~--- 180 (397)
T TIGR01976 110 TRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPR------TRLVAVTAASNTLGSIVDLAAITE--- 180 (397)
T ss_pred cCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCC------ceEEEEeCCCCCCCccCCHHHHHH---
Confidence 88899886543 333345788888875 7899999999998643 678888899999999999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcc
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRL 461 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~ 461 (943)
+|++||+ ++++|+|+... ..
T Consensus 181 -----------------~~~~~~~-------~~ivD~a~~~~-~~----------------------------------- 200 (397)
T TIGR01976 181 -----------------LVHAAGA-------LVVVDAVHYAP-HG----------------------------------- 200 (397)
T ss_pred -----------------HHHHcCC-------EEEEehhhhcc-cc-----------------------------------
Confidence 9999999 99999998543 21
Q ss_pred cccchhhhhcCCCCeeEEEEcCCCccCccCcchhh-h-hcccCccccccCCCCcccccCcccc-CCCCCcc-hHHHHHHH
Q psy11047 462 HCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH-R-TFNVEPLYLRHENSGLAIDYMHWQI-PLSKRFR-ALKLWFVI 537 (943)
Q Consensus 462 ~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~-~-af~~~p~YL~~~~~g~~~d~~~~ti-e~SRrfr-ALklW~tL 537 (943)
.. ... . ..+|.+++++|||++.+-...+. . ....-.++... ..+......+ .|++.+. .+.++.++
T Consensus 201 ~~-~~~----~-~~~d~~~~s~~K~~g~~~G~l~~~~~~~~~l~~~~~~----~~~~~~~~~~~~gt~~~~~~~~l~~al 270 (397)
T TIGR01976 201 LI-DVQ----A-TGADFLTCSAYKFFGPHMGILWGRPELLMNLPPYKLT----FSYDTGPERFELGTPQYELLAGVVAAV 270 (397)
T ss_pred CC-CHH----H-cCCCEEEEechhhcCCceEEEEEcHHHHhhCCCcccc----CccCCCcchhcCCCCCHHHHHHHHHHH
Confidence 00 111 1 15799999999999843211110 0 00000001000 0000000001 1222221 22333333
Q ss_pred HHHHHHHH------HHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHH
Q psy11047 538 RNFGIKGL------QKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 611 (943)
Q Consensus 538 r~~G~~Gl------~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~ 611 (943)
+.+-..|. +..+.. +++.++++ ..++++++.
T Consensus 271 ~~~~~~g~~~~~~~~~~~~~-------------------~~~~~~~~------------------------~~~l~~~l~ 307 (397)
T TIGR01976 271 DYLAGLGESANGSRRERLVA-------------------SFQAIDAY------------------------ENRLAEYLL 307 (397)
T ss_pred HHHHHhCcccccchhhhhhH-------------------HHHHHHHH------------------------HHHHHHHHH
Confidence 33322210 000000 01111111 367889999
Q ss_pred HHHhCCCCeEEecC----CCccEEEEEecCCChHHHHHHHHHhccCcEEEeec----------cc-CCCcEEEEeecCCC
Q psy11047 612 ALVLGDPRFEIPAA----RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA----------SL-RIQGLGRAQNFTRT 676 (943)
Q Consensus 612 ~~L~~~p~~eIl~~----~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t----------~~-~g~~~lR~v~~~~t 676 (943)
+.|++.++++++.+ ...+++.|.+.+.+ ...+.++|.++|.+.-+.. .+ ....++|+++++++
T Consensus 308 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 385 (397)
T TIGR01976 308 VGLSDLPGVTLYGVARLAARVPTVSFTVHGLP--PQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYN 385 (397)
T ss_pred HHHhcCCCEEEeCCCCccCCCceEEEEeCCcC--HHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccC
Confidence 99999888999764 36899999987543 4678888988876432211 11 13468999999999
Q ss_pred CHHHHHHHHHHH
Q psy11047 677 TNDDITRDWNEI 688 (943)
Q Consensus 677 t~edId~ll~~I 688 (943)
|++||++++++|
T Consensus 386 t~~di~~l~~~l 397 (397)
T TIGR01976 386 TAEEVDRLLEAL 397 (397)
T ss_pred CHHHHHHHHHhC
Confidence 999999998764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >KOG1368|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.5e-18 Score=179.85 Aligned_cols=313 Identities=14% Similarity=0.102 Sum_probs=214.0
Q ss_pred HHHHHHHhcc--CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 210 DMLSDAINCL--GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 210 d~L~~alN~n--~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+|-..+.|.. -+.|...|.+.+||.+| |+|+|-+ .|.|+++||++|++|+.+...+
T Consensus 37 eMr~am~eA~vgDdVyGeD~tt~rLE~~v----A~l~GKE------------AgLFv~SGTmgNllaIm~Hc~~------ 94 (384)
T KOG1368|consen 37 EMRRAMAEASVGDDVYGEDPTTNRLEQRV----AELFGKE------------AGLFVPSGTMGNLLAIMVHCHQ------ 94 (384)
T ss_pred HHHHHHhhcccCcccccCCccHHHHHHHH----HHHhCcc------------ceeeecccccccHHHHHHHhcC------
Confidence 4444444443 35789999999999977 7888864 5899999999999999875421
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHH---HHCCccEEEEecCCCCCcCHHHHHHHHHHhh-ccCCCc-EEEEEec
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAG---LIGLVNMRYIESDDKLSLRGDKLIEAIERDK-KKHLIP-FFIFSGL 362 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa---~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~-~kG~~P-~~VVaTa 362 (943)
+| --|++.+.+|.-..+++ .+++..++.|...++|.|++++++.+|.... .-..+| .++|. -
T Consensus 95 ---rg---------~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIcl-E 161 (384)
T KOG1368|consen 95 ---RG---------SEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICL-E 161 (384)
T ss_pred ---CC---------ceEEeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEe-e
Confidence 22 23789999998877765 4788899999999999999999999998432 222233 34444 3
Q ss_pred CCCc-cc-ccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhh--hcCCCccccccccccceee
Q psy11047 363 ALPA-FL-VVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL--VLGDPRFEIPAARHLGMVV 438 (943)
Q Consensus 363 GTT~-tG-aIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA--~GG~~afeLp~~~~Lg~Vc 438 (943)
.|.. +| .+-||+++.+ +..+|+++|+ .+|+||| |.++.+.-+
T Consensus 162 NT~~~~Gg~vlPle~~~~-----------------v~~lak~~gl-------kLH~DGARi~NAavasgV---------- 207 (384)
T KOG1368|consen 162 NTHNNCGGKVLPLEELDR-----------------VKALAKRHGL-------KLHMDGARIFNAAVASGV---------- 207 (384)
T ss_pred ccccccCceEeeHHHHHH-----------------HHHHHhccCC-------eeecchhhhhhHHHHcCC----------
Confidence 3433 34 8889887665 2238999999 9999999 544422211
Q ss_pred eeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhh--hcccCccccccCCCCcccc
Q psy11047 439 IRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHR--TFNVEPLYLRHENSGLAID 516 (943)
Q Consensus 439 FR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~--af~~~p~YL~~~~~g~~~d 516 (943)
| .... .+.+||++++..|.|+.+-++.+.. .|-..+..+..
T Consensus 208 -------------------------~-vk~i---~~~fDSVsiCLSKglgAPVGSViVG~k~FI~kA~~~RK-------- 250 (384)
T KOG1368|consen 208 -------------------------P-VKKI---CSAFDSVSICLSKGLGAPVGSVIVGSKDFIDKARHFRK-------- 250 (384)
T ss_pred -------------------------C-HHHH---HHhhhhhhhhhhccCCCCcccEEEccHHHHHHHHHHHH--------
Confidence 1 1111 3578999999999999555544321 11112222221
Q ss_pred cCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccc
Q psy11047 517 YMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS 596 (943)
Q Consensus 517 ~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~ 596 (943)
++.|+-|- -..|...|...+++.+..+.
T Consensus 251 ----alGGGmRQ-----sGvLaaaaLval~~~~~~L~------------------------------------------- 278 (384)
T KOG1368|consen 251 ----ALGGGMRQ-----SGVLAAAALVALDENVPLLR------------------------------------------- 278 (384)
T ss_pred ----HhcCchhH-----HHHHHHHHHHHhhcchHHHH-------------------------------------------
Confidence 11222121 12445555555555444321
Q ss_pred cCCcHHHHHHHHHHHHHHhCCCCeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCC
Q psy11047 597 YFPKFQSVRLAQKFEALVLGDPRFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTR 675 (943)
Q Consensus 597 ~~p~~~~~~LA~~l~~~L~~~p~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~ 675 (943)
+.+..|+.+++++.+.+++++-.+ .+.|+|...+....--.+.|.+.+.+.|.+.+.... .-+|+++|+.
T Consensus 279 -----~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~~s----~r~Rivlh~Q 349 (384)
T KOG1368|consen 279 -----ADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQARLTAEELCKFLEKNGILLMGGAS----RRIRIVLHHQ 349 (384)
T ss_pred -----HHHHHHHHHHHHhccccceeeecchhhcceeeeecccccCCHHHHHHHHHHCCeEEeeccc----cceEEEEEEe
Confidence 056789999999999888988765 789999887764433368899999999987765432 2389999999
Q ss_pred CCHHHHHHHHHHHH
Q psy11047 676 TTNDDITRDWNEIR 689 (943)
Q Consensus 676 tt~edId~ll~~I~ 689 (943)
+|.++++.++..++
T Consensus 350 vt~~~ve~~~~~~~ 363 (384)
T KOG1368|consen 350 VTDEDVEYVKSVLS 363 (384)
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999988885
|
|
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=180.30 Aligned_cols=203 Identities=16% Similarity=0.069 Sum_probs=151.8
Q ss_pred CCCCCceeEEccCCCChHHHHHHHHHHHH----hccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE
Q psy11047 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAI----NCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL 263 (943)
Q Consensus 188 ~~~sPrf~g~~~~~~s~~silgd~L~~al----N~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf 263 (943)
+-..|-|+.+...++..+.++..|+.... |+... ....-+-.++| .+++.+|+|+|.++. +.+|
T Consensus 40 ~~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~-~y~w~~~~~~E-~aR~~VAklInAd~~----------dIiF 107 (428)
T KOG1549|consen 40 HGTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSR-SYGWKAEDAVE-AAREQVAKLINADPS----------DIVF 107 (428)
T ss_pred CCCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCcc-ccchhhhHHHH-HHHHHHHHHhCCCCC----------cEEE
Confidence 34567788777777777777765554433 44333 12222333456 589999999999875 5999
Q ss_pred cCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-H--CCccEEEEecCCCCCcCHHH
Q psy11047 264 QTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-I--GLVNMRYIESDDKLSLRGDK 340 (943)
Q Consensus 264 TsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-L--G~~~v~~Vp~D~~grmD~da 340 (943)
|+|+||||.+++..--+ .++ + ..+-+|++.+.+|.|+.+++. + -+..++.||++++|..|.+.
T Consensus 108 ts~ATEs~Nlvl~~v~~---------~~~---~--~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~ 173 (428)
T KOG1549|consen 108 TSGATESNNLVLKGVAR---------FFG---D--KTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISK 173 (428)
T ss_pred eCCchHHHHHHHHHhhc---------ccc---c--cccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHH
Confidence 99999999887764211 011 0 011268889999999999984 4 22589999999999999999
Q ss_pred HHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhh
Q psy11047 341 LIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 420 (943)
Q Consensus 341 Le~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~ 420 (943)
++++|+.+ +.+|...+-++..|.+.|+++|.. +|+++|+ .+|+|||+
T Consensus 174 ~~~~i~~~------T~lv~I~~Vnn~~gv~~Pv~EI~~--------------------icr~~~v-------~v~~DaAQ 220 (428)
T KOG1549|consen 174 LREAIRSK------TRLVSIMHVNNEIGVLQPVKEIVK--------------------ICREEGV-------QVHVDAAQ 220 (428)
T ss_pred HHHhcCCC------ceEEEEEecccCccccccHHHHHH--------------------HhCcCCc-------EEEeehhh
Confidence 99999986 789999999999999999999999 9999999 99999999
Q ss_pred cCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccC
Q psy11047 421 LGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKN 491 (943)
Q Consensus 421 GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~ 491 (943)
+-+ .. +.+ ++.+ .+|.++++.|||++.+.
T Consensus 221 avG-~i--~vD--------------------------------------V~el-n~D~~s~s~HK~ygp~~ 249 (428)
T KOG1549|consen 221 AVG-KI--PVD--------------------------------------VQEL-NADFLSISAHKIYGPPG 249 (428)
T ss_pred hcC-Cc--ccc--------------------------------------HHHc-CchheeeecccccCCCc
Confidence 877 22 211 1112 68999999999999554
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-15 Score=169.35 Aligned_cols=301 Identities=12% Similarity=0.028 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
..+..+.+|+++|.+. .+||+|||++|..++.+.. .+| -.|+++..+|+
T Consensus 65 ~~~l~~~lA~~~g~~~------------~~~~~g~t~a~~~al~~l~----------~~g---------d~Vlv~~~~h~ 113 (387)
T PRK09331 65 IADFHEDLAEFLGMDE------------ARVTHGAREGKFAVMHSLC----------KKG---------DYVVLDGLAHY 113 (387)
T ss_pred HHHHHHHHHHHhCCCc------------EEEeCCHHHHHHHHHHHhc----------CCC---------CEEEECCCchH
Confidence 3345567788899853 5789999999987776531 122 24778899999
Q ss_pred HHHHHHHHCCccEEEEec--CCCCCcCHHHHHHHHHHhhc-cCCCcEEEEEecCCCcccccccHHHhhhhcccccccccc
Q psy11047 313 SVEKAGLIGLVNMRYIES--DDKLSLRGDKLIEAIERDKK-KHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 313 Sv~KAa~LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~-kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~ 389 (943)
|+..++.+.+.+++.+++ +.++.+|+++++++|+.... .+..+.+|+.+..++.+|.+.|+++|++
T Consensus 114 s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~----------- 182 (387)
T PRK09331 114 TSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAK----------- 182 (387)
T ss_pred HHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHH-----------
Confidence 999887654558889988 67899999999999976421 1224778888888889999999999999
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhh
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR 469 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~ 469 (943)
+|++||+ ++|||+|++.. .+ | .+ ...
T Consensus 183 ---------la~~~g~-------~livD~a~~~g-~~--~---------------------------------~~-~~~- 208 (387)
T PRK09331 183 ---------VAHEYGI-------PFLLNGAYTVG-RM--P---------------------------------VD-GKK- 208 (387)
T ss_pred ---------HHHHcCC-------EEEEECCcccC-Cc--C---------------------------------CC-HHH-
Confidence 9999999 99999999866 32 1 00 011
Q ss_pred hcCCCCeeEEEEcCCCccCccC-cchhhhhcccCccccccC-CCCcccccCccc-cCCCCC-cchHHHHHHHHHHHHHHH
Q psy11047 470 IQGLGRAQNFTIVPSSLLRVKN-SGALHRTFNVEPLYLRHE-NSGLAIDYMHWQ-IPLSKR-FRALKLWFVIRNFGIKGL 545 (943)
Q Consensus 470 l~Gie~ADSItiDpHK~L~vr~-~~~L~~af~~~p~YL~~~-~~g~~~d~~~~t-ie~SRr-frALklW~tLr~~G~~Gl 545 (943)
..+|.+++++|||++..- .+.+ ..++.++..- .....+...... +.++-+ ..+..++.++. -+
T Consensus 209 ----~g~D~~~~s~~K~l~~~~~~G~l----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~-----~~ 275 (387)
T PRK09331 209 ----LGADFIVGSGHKSMAASAPSGVL----ATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFP-----HV 275 (387)
T ss_pred ----cCCCEEEeeCcccccCCCCEEEE----EECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHH-----HH
Confidence 147999999999997221 1111 0011111100 000000000000 111111 12222222221 12
Q ss_pred HHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEec-
Q psy11047 546 QKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPA- 624 (943)
Q Consensus 546 ~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~- 624 (943)
.+.++.. . ++.+.++++.+.|.++++++++.
T Consensus 276 ~~~~~~~-----------------------------~-------------------~~~~~~~~l~~~L~~l~g~~~~~~ 307 (387)
T PRK09331 276 VERVKRW-----------------------------D-------------------EEVKKARWFVDELEKIEGFKQLGE 307 (387)
T ss_pred HHHHHHH-----------------------------H-------------------HHHHHHHHHHHHHhcCCCEEEecc
Confidence 2222220 0 04667889999999999999985
Q ss_pred -CCCccEEEEEecCCChH-------HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 625 -ARHLGMVVIRLLGENIL-------TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 625 -~~~l~iV~Fr~~g~n~l-------~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+...+++.|........ ...+.+.|.++|.....+ ....++|+ .+...|.+|+++++++|+++..+
T Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~---~~~~i~ri-~~~g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 308 KPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKP---GATKEFKL-STYGLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred CcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEcc---CCceEEEE-EeccCCHHHHHHHHHHHHHHHHh
Confidence 33577887776532111 245888888888642221 12335555 33336899999999999887554
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=192.83 Aligned_cols=361 Identities=13% Similarity=-0.016 Sum_probs=220.3
Q ss_pred ceeEEccCCCChHHHHHHHHHHHH-----hccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCCh
Q psy11047 193 YMHAYFPALNSYPSLLGDMLSDAI-----NCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTA 267 (943)
Q Consensus 193 rf~g~~~~~~s~~silgd~L~~al-----N~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGG 267 (943)
-|+.|-.+++..+..+.+++..++ |+. ..+..+..++.+-..+++.+|++||.++.. ...+||+|+
T Consensus 36 iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~-s~~~~s~~~~~~~e~aR~~ia~~lga~~~~--------~~VvFtsna 106 (805)
T PLN02724 36 VYLDHAGATLYSESQLEAALADFSSNVYGNPH-SQSDSSMRSSDTIESARQQVLEYFNAPPSD--------YACVFTSGA 106 (805)
T ss_pred EeEeCCCCCCCCHHHHHHHHHHHHhhccCCCC-cCcchhhhHHHHHHHHHHHHHHHhCCCccc--------eEEEEeCCh
Confidence 455555444434556666655443 332 223345566777778999999999996530 146999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH---CCccEEEEecC--------CCCCc
Q psy11047 268 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI---GLVNMRYIESD--------DKLSL 336 (943)
Q Consensus 268 TeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L---G~~~v~~Vp~D--------~~grm 336 (943)
|+|+..+... +. + .+| -.|+++...|.|+.-...+ .+..++.++++ ..+.+
T Consensus 107 T~alnlva~~-----l~-~---~~g---------d~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~ 168 (805)
T PLN02724 107 TAALKLVGET-----FP-W---SSE---------SHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSV 168 (805)
T ss_pred HHHHHHHHHH-----CC-C---CCC---------CeEEEeeccccchHHHHHHHHHcCCeEEeccchhcccccccccccc
Confidence 9996644321 10 0 112 2466689999987633222 23578888876 45555
Q ss_pred CH--HHHHHHHHH----hhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHc-------
Q psy11047 337 RG--DKLIEAIER----DKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSY------- 403 (943)
Q Consensus 337 D~--daLe~aI~~----d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~------- 403 (943)
+. ++|++.++. ....+..+.+|+.++.++.+|.+.|++.|.. +++..
T Consensus 169 ~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~--------------------~~~~~~~~~~~~ 228 (805)
T PLN02724 169 VVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKL--------------------IKDNQHSNFSKS 228 (805)
T ss_pred ccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHH--------------------HHHhcccccccC
Confidence 54 567665431 1111223569999999999999999997755 44432
Q ss_pred C-CCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEc
Q psy11047 404 F-PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIV 482 (943)
Q Consensus 404 G-l~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiD 482 (943)
| + +++||||++.+ .. |. . +..+ .+|.++++
T Consensus 229 g~~-------~v~vDaaQ~~g-~~--pi---------------------------------D-----v~~~-~~Dfl~~S 259 (805)
T PLN02724 229 GRW-------MVLLDAAKGCG-TS--PP---------------------------------D-----LSRY-PADFVVVS 259 (805)
T ss_pred cce-------EEEeehhhhcC-CC--CC---------------------------------C-----hhhc-CCCEEEEe
Confidence 2 4 69999999876 32 10 0 1111 58999999
Q ss_pred CCCccCccC-cchh--hh-hc-ccCccccccCCCCcccccCcc--c-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11047 483 PSSLLRVKN-SGAL--HR-TF-NVEPLYLRHENSGLAIDYMHW--Q-IPLSKRFRALKLWFVIRNFGIKGLQKHIREIFS 554 (943)
Q Consensus 483 pHK~L~vr~-~~~L--~~-af-~~~p~YL~~~~~g~~~d~~~~--t-ie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~ 554 (943)
+|||++.+. -+.| .. .+ ...|.|.+.+..........+ . ....+||++. +....|+.|+.+.++.+.+
T Consensus 260 ~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~G----T~n~~~i~~l~aal~~l~~ 335 (805)
T PLN02724 260 FYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDG----TISFLSIAALRHGFKLLNR 335 (805)
T ss_pred cceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCC----CcchhHHHHHHHHHHHHHH
Confidence 999999322 2222 11 11 234555443210000000001 1 1234566653 7788888888888887532
Q ss_pred cCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCC------CeEEecCC--
Q psy11047 555 GLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDP------RFEIPAAR-- 626 (943)
Q Consensus 555 ~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p------~~eIl~~~-- 626 (943)
.|++.|.++ ..+|++++.+.|++++ +++++++.
T Consensus 336 ---------------ig~~~I~~~------------------------~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~ 376 (805)
T PLN02724 336 ---------------LTISAIAMH------------------------TWALTHYVANSLRNLKHGNGAPVCVLYGNHTF 376 (805)
T ss_pred ---------------hChHHHHHH------------------------HHHHHHHHHHHHHhccCCCCCeEEEEcCCCCC
Confidence 345555443 4689999999999886 58888643
Q ss_pred ------CccEEEEEecCCC--hH----HHHHHHH--HhccCcEEEeeccc----------------------------CC
Q psy11047 627 ------HLGMVVIRLLGEN--IL----TEKLLKR--LNSKGRLHCVPASL----------------------------RI 664 (943)
Q Consensus 627 ------~l~iV~Fr~~g~n--~l----~~~Ll~~--L~~~G~~~~s~t~~----------------------------~g 664 (943)
..++|+|.+.+.+ .+ ...|++. +.-+...||.+-.. .+
T Consensus 377 ~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~ 456 (805)
T PLN02724 377 KLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHG 456 (805)
T ss_pred CCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecC
Confidence 5789999998754 12 2233322 33333456654211 01
Q ss_pred --CcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 665 --QGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 665 --~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
.+++|+++++++|.+||+++++.|++.-
T Consensus 457 ~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 457 RPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred cccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 3899999999999999999999998864
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-16 Score=190.26 Aligned_cols=319 Identities=14% Similarity=0.044 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChH----HHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTAS----ESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGT----eANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..++-.++.+||++++|++ ..+||+++| +|+++++.+... .+|- ..+-+|
T Consensus 566 ~~~~~~~~r~~la~i~g~~------------~v~f~pnaga~ge~a~~~vi~~~~~---------~~Gd-----~~r~~v 619 (993)
T PLN02414 566 YQEMFEDLGDLLCEITGFD------------SFSLQPNAGAAGEYAGLMVIRAYHL---------SRGD-----HHRNVC 619 (993)
T ss_pred HHHHHHHHHHHHHHHhCCC------------eEEEcCCCcHHHHHHHHHHHHHHHh---------ccCC-----CCCCEE
Confidence 3456668999999999993 478999999 888777765421 0121 134578
Q ss_pred EecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 305 YCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 305 ~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
++|..+|.|+..++.+.+.+++.|++|++|.+|+++|++.|+.... .+.+|+.|.++|..|.++|+++|++
T Consensus 620 li~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~---~ta~V~vt~pSn~gg~e~~I~eI~~------ 690 (993)
T PLN02414 620 IIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKD---NLAALMVTYPSTHGVYEEGIDEICD------ 690 (993)
T ss_pred EeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccCC---CeEEEEEECCCccccccchHHHHHH------
Confidence 9999999999998866556999999999999999999999985321 2689999999999999999999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccccc
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV 464 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p 464 (943)
+|+++|. .++||||+..+ ... ...
T Consensus 691 --------------iah~~Ga-------lv~vDgAq~~a-~~~----------------------------------l~~ 714 (993)
T PLN02414 691 --------------IIHDNGG-------QVYMDGANMNA-QVG----------------------------------LTS 714 (993)
T ss_pred --------------HHHHcCC-------EEEEEecCHHh-ccC----------------------------------cCC
Confidence 9999999 99999998654 210 111
Q ss_pred chhhhhcCCCCeeEEEEcCCCccCccCc------chhhhhcccCccccccCC---CCcccccCccccCCCCCc-------
Q psy11047 465 PASLRIQGLGRAQNFTIVPSSLLRVKNS------GALHRTFNVEPLYLRHEN---SGLAIDYMHWQIPLSKRF------- 528 (943)
Q Consensus 465 ~~r~~l~Gie~ADSItiDpHK~L~vr~~------~~L~~af~~~p~YL~~~~---~g~~~d~~~~tie~SRrf------- 528 (943)
+ +--.||.+.+++|||++.+.+ +.+.-. ..-.+|+.... .+...+.....--|+++.
T Consensus 715 p------~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~-~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al 787 (993)
T PLN02414 715 P------GFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSAL 787 (993)
T ss_pred c------cccCCCEEEecCCccCCcCcccCCCCeeeEEEc-hhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHH
Confidence 1 113689999999998883331 111000 00112222110 010000001111245432
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHH
Q psy11047 529 RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 608 (943)
Q Consensus 529 rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~ 608 (943)
-++..|..++.+|.+|+++.-+.+ +.+|.
T Consensus 788 ~l~~A~~yi~~lG~~Gl~~~a~~a---------------------------------------------------~~nAn 816 (993)
T PLN02414 788 ILPISYTYIAMMGSEGLTDASKIA---------------------------------------------------ILNAN 816 (993)
T ss_pred HHHHHHHHHHHHCHhHHHHHHHHH---------------------------------------------------HHHHH
Confidence 235778899999999998877773 45677
Q ss_pred HHHHHHhCCCCeEEecC--CCccEEEEEecCCC----hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHH
Q psy11047 609 KFEALVLGDPRFEIPAA--RHLGMVVIRLLGEN----ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDIT 682 (943)
Q Consensus 609 ~l~~~L~~~p~~eIl~~--~~l~iV~Fr~~g~n----~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId 682 (943)
|+++.|.+..++....+ +.++=..+.+.... .-...+.++|...|....+ ..+.....+|+...-..+++|||
T Consensus 817 Yl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt-~~~pv~~~lmiepTE~~skeelD 895 (993)
T PLN02414 817 YMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPT-MSWPVPGTLMIEPTESESKAELD 895 (993)
T ss_pred HHHHHHHhhCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEee-eccccCCEEEEEeeeeCCHHHHH
Confidence 88887766433333332 22222222332111 1237799999977753222 33556789999888999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy11047 683 RDWNEIRNTATEILA 697 (943)
Q Consensus 683 ~ll~~I~~~~~~ll~ 697 (943)
+++++|+.+..++.+
T Consensus 896 rf~~al~~i~~e~~~ 910 (993)
T PLN02414 896 RFCDALISIREEIAD 910 (993)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888765
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-15 Score=168.38 Aligned_cols=301 Identities=15% Similarity=0.089 Sum_probs=194.7
Q ss_pred HHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH---
Q psy11047 242 KMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG--- 318 (943)
Q Consensus 242 ~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa--- 318 (943)
+++|.+++ ..+||+|+|+++..++... ++ ++ .++.+|+++..+|.|+..+.
T Consensus 80 ~l~g~~~~----------~v~~~~~~t~~l~~~~~~~----~~------~~------~~~~~i~~~~~~~~s~~~~~~~~ 133 (406)
T TIGR01814 80 RLVGAKED----------EVVVMNTLTINLHLLLASF----YK------PT------PKRYKILLEAKAFPSDHYAIESQ 133 (406)
T ss_pred cccCCCCC----------cEEEeCCchHHHHHHHHHh----cC------Cc------CCccEEEecCCCCChHHHHHHHH
Confidence 88998653 5799999999977665431 10 11 01235778999999865543
Q ss_pred --HHCCccE----EEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccc
Q psy11047 319 --LIGLVNM----RYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKL 392 (943)
Q Consensus 319 --~LG~~~v----~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L 392 (943)
..|. .+ +.++.+.+|.+|++++++.++... ..+.+|+.++.++.+|.+.|+++|++
T Consensus 134 ~~~~g~-~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~~t~lv~~~~v~~~tG~~~~~~~i~~-------------- 195 (406)
T TIGR01814 134 LQLHGL-TVEESMVQIEPREEETLRLEDILDTIEKNG---DDIAVILLSGVQYYTGQLFDMAAITR-------------- 195 (406)
T ss_pred HHhcCC-CcccceEEeccCCCCccCHHHHHHHHHhcC---CCeEEEEEeccccccceecCHHHHHH--------------
Confidence 2353 44 567777788999999999886431 23678999999999999999999999
Q ss_pred cCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcC
Q psy11047 393 QTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQG 472 (943)
Q Consensus 393 ~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~G 472 (943)
+|+++|+ +++||++++.+ .. |. . +..
T Consensus 196 ------~~~~~g~-------~~~vD~aq~~G-~~--~i---------------------------------d-----~~~ 221 (406)
T TIGR01814 196 ------AAHAKGA-------LVGFDLAHAVG-NV--PL---------------------------------D-----LHD 221 (406)
T ss_pred ------HHHHcCC-------EEEEEcccccC-Cc--cc---------------------------------c-----ccc
Confidence 9999999 99999999877 32 10 0 111
Q ss_pred CCCeeEEEEcCCCccC-ccCcchh-hh-hc-ccCccccccCCCCc--cccc-CccccCCCCCcchHHHHHHHHHHHHHHH
Q psy11047 473 LGRAQNFTIVPSSLLR-VKNSGAL-HR-TF-NVEPLYLRHENSGL--AIDY-MHWQIPLSKRFRALKLWFVIRNFGIKGL 545 (943)
Q Consensus 473 ie~ADSItiDpHK~L~-vr~~~~L-~~-af-~~~p~YL~~~~~g~--~~d~-~~~tie~SRrfrALklW~tLr~~G~~Gl 545 (943)
..+|.+++++||||+ -+....+ .. .. ...|.+.+...... ..+. ..+.. ..+++++. +....+..++
T Consensus 222 -~gvD~~~~s~hK~l~g~pG~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~G----T~~~~~~~~l 295 (406)
T TIGR01814 222 -WGVDFACWCTYKYLNAGPGAGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGL-IPCGFRIS----NPPILSVAAL 295 (406)
T ss_pred -CCCCEEEEcCccccCCCCCeEEEEehhhhhhcCCCCCcccCCCCccccccccccCC-CccceeeC----CccHHHHHHH
Confidence 257999999999975 2221111 01 11 11221111000000 0000 01111 11234431 5566666777
Q ss_pred HHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCC----CCeE
Q psy11047 546 QKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD----PRFE 621 (943)
Q Consensus 546 ~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~----p~~e 621 (943)
.+.++.+.+ .|.+.++++ ..+|++++.+.|.+. ++++
T Consensus 296 ~~al~~~~~---------------~g~~~i~~~------------------------~~~l~~~l~~~l~~~~~~~~~~~ 336 (406)
T TIGR01814 296 RGSLDIFDQ---------------AGMEALRKK------------------------SLLLTDYLEELIKARCGGPPVLT 336 (406)
T ss_pred HHHHHHHHh---------------cCHHHHHHH------------------------HHHHHHHHHHHHHhhcCCCCceE
Confidence 777776422 244444332 467888888888765 4699
Q ss_pred EecCC----CccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEee-cCCCCHHHHHHHHHHHHHHH
Q psy11047 622 IPAAR----HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQN-FTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 622 Il~~~----~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~-~~~tt~edId~ll~~I~~~~ 692 (943)
++.+. ..++|+|+++ .+ .+.+.++|.++|. ++. ..+.+.+|++. +.+||++||+++++.|+++.
T Consensus 337 i~~~~~~~~r~~~v~~~~~-~~--~~~~~~~L~~~gi-~v~---~~~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 337 IITPRDHAQRGCQLSLTHP-VP--GKAVFQALIKRGV-IGD---KREPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred EeCCCChhhcCCeEEEEec-CC--HHHHHHHHHHCCE-EEe---ccCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 98753 3579999986 32 4678888888875 443 23456999987 68999999999999998753
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-15 Score=163.06 Aligned_cols=141 Identities=12% Similarity=0.074 Sum_probs=112.6
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
+.....+..++.+++++++|.+.+ ..+||+|+|+++..++.+.... +.. .++..|+
T Consensus 37 ~~~~~~~~~~~r~~la~~~g~~~~----------~v~~~~g~t~a~~~~l~~l~~~----------~~~----~g~~~vi 92 (353)
T TIGR03235 37 GHNAKKAVERARKQVAEALGADTE----------EVIFTSGATESNNLAILGLARA----------GEQ----KGKKHII 92 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC----------eEEEeCCHHHHHHHHHHHHHHh----------ccc----CCCCeee
Confidence 444566777899999999999753 5899999999998877654321 000 1224688
Q ss_pred ecCCCchHHHHHHH-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 306 CSDQAHSSVEKAGL-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 306 ~S~~aHySv~KAa~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
++..+|.|+..+.. + -+.+++.|+.+.++.+|+++|+++++++ +.+|+.+..++.+|.+.|+++|.+
T Consensus 93 ~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~------~~lv~~~~~~n~tG~~~~~~~I~~---- 162 (353)
T TIGR03235 93 TSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRPD------TLLVSIMHVNNETGSIQPIREIAE---- 162 (353)
T ss_pred EcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCC------CEEEEEEcccCCceeccCHHHHHH----
Confidence 89999999877652 2 2358899999888999999999988643 678889999999999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ |+|||++++.+
T Consensus 163 ----------------l~~~~~~-------~~ivD~a~~~g 180 (353)
T TIGR03235 163 ----------------VLEAHEA-------FFHVDAAQVVG 180 (353)
T ss_pred ----------------HHHHcCC-------EEEEEchhhcC
Confidence 9999999 99999998765
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-13 Score=154.35 Aligned_cols=292 Identities=11% Similarity=0.028 Sum_probs=183.2
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
+..+.+++++|. + ..++|+|||+++..++.+.. .+| -.|+++..+|++.
T Consensus 48 ~l~~~la~~~g~-~-----------~i~~~~g~t~al~~~l~~~~----------~~g---------d~Vl~~~~~~~~~ 96 (361)
T cd06452 48 DFHHDLAEFLGM-D-----------EARVTPGAREGKFAVMHSLC----------EKG---------DWVVVDGLAHYTS 96 (361)
T ss_pred HHHHHHHHHcCC-c-----------eEEEeCCHHHHHHHHHHHhc----------CCC---------CEEEEcCCcchHH
Confidence 344567888988 2 47899999999887775421 122 2477788999999
Q ss_pred HHHHHHCCccEEEEecCCCC--CcCHHHHHHHHHHhhcc-CCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDDKL--SLRGDKLIEAIERDKKK-HLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~g--rmD~daLe~aI~~d~~k-G~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
..++..-+.+++.|+.+.++ .+|+++|++++++.... +..+.+|+.+..++.+|.+.|+++|.+
T Consensus 97 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~------------- 163 (361)
T cd06452 97 YVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAK------------- 163 (361)
T ss_pred HHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHH-------------
Confidence 88775544588889987655 99999999999753221 223678888888889999999999999
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhc
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQ 471 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~ 471 (943)
+|+++|+ ++|+|+||+.. .+ + + + ..
T Consensus 164 -------~~~~~~~-------~vivD~a~~~g-~~--~--------------------------------~-~-~~---- 188 (361)
T cd06452 164 -------VCHEYGV-------PLLLNGAYTVG-RM--P--------------------------------V-S-GK---- 188 (361)
T ss_pred -------HHHHcCC-------eEEEECCcccC-Cc--C--------------------------------C-C-HH----
Confidence 9999999 99999999754 21 0 0 0 00
Q ss_pred CCCCeeEEEEcCCCccCccCc-ch------hhhhcccCccccccCCCCcccccCccccCC-CCC-cchHHHHHHHHHHHH
Q psy11047 472 GLGRAQNFTIVPSSLLRVKNS-GA------LHRTFNVEPLYLRHENSGLAIDYMHWQIPL-SKR-FRALKLWFVIRNFGI 542 (943)
Q Consensus 472 Gie~ADSItiDpHK~L~vr~~-~~------L~~af~~~p~YL~~~~~g~~~d~~~~tie~-SRr-frALklW~tLr~~G~ 542 (943)
.. .+|.++.++||+++..-+ +. +...+.....++ +....+..+ +.+ ..+..++..+..+
T Consensus 189 ~~-~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~-- 256 (361)
T cd06452 189 EL-GADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMF---------KIKEVELLGCTLRGAPLVTLMASFPHV-- 256 (361)
T ss_pred Hc-CCCEEEecCCccccCCCCeEEEEECHHHHHHHhcccccc---------ccceeeeeccccCchHHHHHHHHHHHH--
Confidence 01 469999999999872111 11 111110000010 000001111 111 2233333333221
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEE
Q psy11047 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI 622 (943)
Q Consensus 543 ~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eI 622 (943)
.+.+++.. +..+.++++.+.|.++|++++
T Consensus 257 ---~~~~~~~~------------------------------------------------~~~~~~~~l~~~L~~l~g~~v 285 (361)
T cd06452 257 ---KERVKRWD------------------------------------------------EEVEKARWFVAELEKIEGIKQ 285 (361)
T ss_pred ---HHHHHHHH------------------------------------------------HHHHHHHHHHHHHhcCCCeEE
Confidence 22233210 034567889999999999999
Q ss_pred ec--CCCccEEEEEecCCChH-------HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 623 PA--ARHLGMVVIRLLGENIL-------TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 623 l~--~~~l~iV~Fr~~g~n~l-------~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
+. +...|++.|+..+.... ...+.+.|.++|.. +.. .....++|++. ...++++++.++++|+++.
T Consensus 286 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~-~~~--~~~~~~~ri~~-~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 286 LGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIH-GIK--PGLTRYFKLST-YGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred ECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCce-EEc--CCCceEEEEEe-cCCCHHHHHHHHHHHHHHh
Confidence 74 45678888887532111 12588888888865 221 11234788844 2268899999999998653
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-14 Score=159.27 Aligned_cols=306 Identities=14% Similarity=0.103 Sum_probs=188.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
+..+|...++|.. +++++|.+ .++++++||++|+.++.+... .+| -
T Consensus 36 ~~~~~~~~~l~~~----la~~~~~~------------~~~~~~~Gs~a~~~~l~~~~~---------~~g---------d 81 (353)
T PLN02721 36 LGYDPTALRLEEE----MAKIFGKE------------AALFVPSGTMGNLISVLVHCD---------VRG---------S 81 (353)
T ss_pred cCCCHHHHHHHHH----HHHHhCCc------------eeEEecCccHHHHHHHHHHcc---------CCC---------C
Confidence 4456666666665 56777764 368899999999877765321 022 2
Q ss_pred EEEecCCCchHHHHH---HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccC-CCcEEEEEecCC-Cccccccc---HH
Q psy11047 303 VAYCSDQAHSSVEKA---GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKH-LIPFFIFSGLAL-PAFLVVDS---YC 374 (943)
Q Consensus 303 vV~~S~~aHySv~KA---a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG-~~P~~VVaTaGT-T~tGaIDp---L~ 374 (943)
.|++++.+|+++.++ +...+.+++.+|.++++.+|+++|++.|++....+ ..+.+|+.+.-. +.+|.+-| ++
T Consensus 82 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~ 161 (353)
T PLN02721 82 EVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTD 161 (353)
T ss_pred eEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHH
Confidence 377788999988874 33445678889988889999999999997542211 125556654433 33566544 78
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHH
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKR 454 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~ 454 (943)
+|.+ +|++||+ |+|+|+|+... .+. ..
T Consensus 162 ~l~~--------------------l~~~~g~-------~livD~a~~~~-~~~-~~------------------------ 188 (353)
T PLN02721 162 KVGE--------------------LAKRHGL-------KLHIDGARIFN-ASV-AL------------------------ 188 (353)
T ss_pred HHHH--------------------HHHHcCC-------EEEEEchhhhc-chh-hh------------------------
Confidence 8888 9999999 99999997432 110 00
Q ss_pred hhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHH
Q psy11047 455 LNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLW 534 (943)
Q Consensus 455 l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW 534 (943)
..+ .... ++.+|++++++|||++.+-...+ ..++.++.... .......++-+. +
T Consensus 189 -------~~~-~~~~---~~~~d~~~~s~sK~l~~~~G~~~----~~~~~~~~~~~------~~~~~~~~~~~~-----~ 242 (353)
T PLN02721 189 -------GVP-VHRL---VKAADSVSVCLSKGLGAPVGSVI----VGSKSFIRKAK------RLRKTLGGGMRQ-----V 242 (353)
T ss_pred -------CCC-HHHH---hhhCCEEEEecccccCCceeeEE----ecCHHHHHhHH------HHHHhcCCCeeh-----h
Confidence 000 0111 24679999999999884322211 01122211100 000000111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHH
Q psy11047 535 FVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 614 (943)
Q Consensus 535 ~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L 614 (943)
..+...+..+++++++++-. ..++++++.+.|
T Consensus 243 ~~~~~~~~~~l~~~~~~~~~------------------------------------------------~~~~~~~l~~~L 274 (353)
T PLN02721 243 GVLAAAALVALQENVPKLED------------------------------------------------DHKKAKLLAEGL 274 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------------------------------------HHHHHHHHHHHH
Confidence 11222334445444443110 235677888889
Q ss_pred hCCCCeEE-ecCCCccEEEEEecCCC-hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 615 LGDPRFEI-PAARHLGMVVIRLLGEN-ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 615 ~~~p~~eI-l~~~~l~iV~Fr~~g~n-~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
.+.+++++ +.++..|++.|++.... .....+.++|.++|.. +.+ .+..++|++++..++++|++++++.|+++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~-v~~---~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~ 350 (353)
T PLN02721 275 NQIKGLRVNVAAVETNIVYFDITDGSRITAEKLCKSLEEHGVL-LMP---GNSSRIRVVTHHQISDSDVQYTLSCFQQAA 350 (353)
T ss_pred HhCCCcEEecCCccceEEEEEccCCccccHHHHHHHHHhCCcE-Eec---CCCceEEEEecCcCCHHHHHHHHHHHHHHh
Confidence 88888876 66777889999986421 1257888899887764 433 245689998888999999999999998865
Q ss_pred H
Q psy11047 693 T 693 (943)
Q Consensus 693 ~ 693 (943)
.
T Consensus 351 ~ 351 (353)
T PLN02721 351 L 351 (353)
T ss_pred h
Confidence 3
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-15 Score=161.10 Aligned_cols=292 Identities=12% Similarity=0.068 Sum_probs=174.9
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+++++++| ++ ..++|+|||++|..++.+.. .+| -.|+++..+|+++
T Consensus 36 ~l~~~~a~~~g-~~-----------~~~~~~~gt~a~~~~~~~l~----------~~g---------d~v~~~~~~~~~~ 84 (338)
T cd06502 36 KLEARAAELFG-KE-----------AALFVPSGTAANQLALAAHT----------QPG---------GSVICHETAHIYT 84 (338)
T ss_pred HHHHHHHHHhC-CC-----------eEEEecCchHHHHHHHHHhc----------CCC---------CeEEEecCcceee
Confidence 44568899998 42 58999999999887766421 122 2467889999987
Q ss_pred HHH---HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccC-CCcEEEEEecCCCcccc---cccHHHhhhhcccccccc
Q psy11047 315 EKA---GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKH-LIPFFIFSGLALPAFLV---VDSYCCLGTAMIVKGLGF 387 (943)
Q Consensus 315 ~KA---a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG-~~P~~VVaTaGTT~tGa---IDpL~eIa~~~~~~d~~~ 387 (943)
.++ +.+.+.+++.++.+. +.+|.++|++++++..+++ ..+.+|+.+..++ +|. .+++++|.+
T Consensus 85 ~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n-~g~~~~~~~l~~i~~--------- 153 (338)
T cd06502 85 DEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTE-GGTVYPLDELKAISA--------- 153 (338)
T ss_pred ecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecC-CccccCHHHHHHHHH---------
Confidence 664 234445788888865 8899999999997532221 1255666555443 564 466788888
Q ss_pred ccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchh
Q psy11047 388 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467 (943)
Q Consensus 388 ~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r 467 (943)
+|++||+ |+|+|+||..+ ... ..| . ...
T Consensus 154 -----------~~~~~~~-------~livDea~~~~-~~~-----------------------------~~~---~-~~~ 181 (338)
T cd06502 154 -----------LAKENGL-------PLHLDGARLAN-AAA-----------------------------ALG---V-ALK 181 (338)
T ss_pred -----------HHHHcCC-------eEeechHHHHH-HHH-----------------------------hcC---C-CHH
Confidence 9999999 99999998533 110 000 0 111
Q ss_pred hhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHH
Q psy11047 468 LRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQK 547 (943)
Q Consensus 468 ~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~ 547 (943)
.. ...+|.++.++|||++......+ ..++..+.. .........++-+..++..+..+..+...++.+
T Consensus 182 ~~---~~~~d~~~~s~sK~~~~~~g~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~ 248 (338)
T cd06502 182 TY---KSGVDSVSFCLSKGGGAPVGAVV----VGNRDFIAR------ARRRRKQAGGGMRQSGFLAAAGLAALENDLWLR 248 (338)
T ss_pred HH---HhcCCEEEEeccccCCCccceEE----ECCHHHHHH------HHHHHHHhCCChhhHHHHHHHHHHHhcCchHHH
Confidence 11 13578999999999985432211 001111100 000000000111111222222233232223333
Q ss_pred HHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCC
Q psy11047 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 627 (943)
Q Consensus 548 ~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~ 627 (943)
.+++ ..++++++.+.|++.+ +. +.++.
T Consensus 249 ~~~~---------------------------------------------------~~~~~~~l~~~L~~~~-~~-~~~~~ 275 (338)
T cd06502 249 RLRH---------------------------------------------------DHEMARRLAEALEELG-GL-ESEVQ 275 (338)
T ss_pred HHHH---------------------------------------------------HHHHHHHHHHHHHhcC-CC-ccccc
Confidence 3333 2456788888888774 33 44678
Q ss_pred ccEEEEEecCCChHHHHHHHHHh---ccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHH
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLN---SKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRN 690 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~---~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~ 690 (943)
.|++++++.+.+....++.+++. ++|.+ +.+. +..++|++.+..+|.+|++++++.+++
T Consensus 276 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~-~~~~---~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 276 TNIVLLDPVEANAVFVELSKEAIERRGEGVL-FYAW---GEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred CCeEEEecCCccHHHHHHHHHHHHhhhCCEE-EEec---CCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 99999998654555556666654 56754 3332 226899999999999999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-13 Score=168.39 Aligned_cols=316 Identities=13% Similarity=0.053 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcC-ChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQT-TASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTs-GGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
++-.+.-.|+++++|++.. .+.. +|+.+++.+|++-|.+... +| -..+-+|++|..
T Consensus 543 q~i~elq~~l~eLtGmd~~------------Sl~p~sGA~gE~A~Lmair~yh~~------~G-----e~~r~~vLIp~s 599 (954)
T PRK12566 543 AMIDELEAWLCAITGFDAI------------CMQPNSGAQGEYAGLLAIRRYHRS------RG-----QSQRDICLIPSS 599 (954)
T ss_pred HHHHHHHHHHHHHHCCCeE------------eecCCchHHHHHHHHHHHHHHHHh------cC-----CCCCCEEEeccc
Confidence 3333444799999999752 4555 7888999998887754321 12 013456889999
Q ss_pred CchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccc
Q psy11047 310 AHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 310 aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~ 389 (943)
+|.+..-++.+.+.+++.|++|++|.+|+++|++.|++.. ..+.+|+.|..++..+..+|+++|++
T Consensus 600 aHgtNpasa~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~---~~laaVmiT~Pnt~Gv~e~~V~eI~~----------- 665 (954)
T PRK12566 600 AHGTNPASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAAG---DRLSCLMITYPSTHGVYEEGIREICE----------- 665 (954)
T ss_pred ccccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHhhccC---CCEEEEEEEecCcCceecchHHHHHH-----------
Confidence 9988765565555699999999999999999999997321 13678888999888878889999999
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhh
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR 469 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~ 469 (943)
+++++|. .++||||..-+ ... +..+
T Consensus 666 ---------iah~~Ga-------lv~vDgA~~~a-~~~----------------------------------l~~P---- 690 (954)
T PRK12566 666 ---------VVHQHGG-------QVYMDGANLNA-QVG----------------------------------LARP---- 690 (954)
T ss_pred ---------HHHHcCC-------EEEEEeeChhh-ccC----------------------------------CCCh----
Confidence 9999999 89999998533 110 1111
Q ss_pred hcCCCCeeEEEEcCCCccCccCcchh--hhhcccC---ccccccCCCCccccc-CccccCCCCC----cc---hHHHHHH
Q psy11047 470 IQGLGRAQNFTIVPSSLLRVKNSGAL--HRTFNVE---PLYLRHENSGLAIDY-MHWQIPLSKR----FR---ALKLWFV 536 (943)
Q Consensus 470 l~Gie~ADSItiDpHK~L~vr~~~~L--~~af~~~---p~YL~~~~~g~~~d~-~~~tie~SRr----fr---ALklW~t 536 (943)
|--.||.+.+++|||++.+...-. ...+... .+|+..-. + .|. +...-+++.. .. ++..|..
T Consensus 691 --g~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P-~--~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Y 765 (954)
T PRK12566 691 --ADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHP-V--VPVEGPDPNNGAVSAAPWGSASILPISWMY 765 (954)
T ss_pred --hhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCC-C--cCCCCCCCCCCceeecccchHHHHHHHHHH
Confidence 113789999999999983222110 0111111 13444210 0 000 0000022221 12 4577888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhC
Q psy11047 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 616 (943)
Q Consensus 537 Lr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~ 616 (943)
++.+|.+ +.+.-.. .+.+|.|+++.|.+
T Consensus 766 i~~lG~e-Lk~aa~~---------------------------------------------------ailnAnYla~rL~~ 793 (954)
T PRK12566 766 IAMMGPQ-LADASEV---------------------------------------------------AILSANYLANQLGG 793 (954)
T ss_pred HHHHCHH-HHHHHHH---------------------------------------------------HHHHHHHHHHHhHh
Confidence 8888876 4433322 35577888887766
Q ss_pred CCCeEEecCC-------CccEEEEEecCC-ChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHH
Q psy11047 617 DPRFEIPAAR-------HLGMVVIRLLGE-NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEI 688 (943)
Q Consensus 617 ~p~~eIl~~~-------~l~iV~Fr~~g~-n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I 688 (943)
. +++...+ +..+.++.+++. ..-...+.++|...|. +.....+.....+|+...-..+++|||+++++|
T Consensus 794 ~--~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gi-hapt~~fPv~~~LmIepTE~eskeEIDrf~eAL 870 (954)
T PRK12566 794 A--FPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGF-HAPTMSFPVPGTLMVEPTESESKAELDRFVEAM 870 (954)
T ss_pred h--CCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCc-EEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHH
Confidence 3 4444321 233444444421 1113678999987775 332234556789999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy11047 689 RNTATEILAE 698 (943)
Q Consensus 689 ~~~~~~ll~~ 698 (943)
+.+.+++.+-
T Consensus 871 ~~I~~e~~~v 880 (954)
T PRK12566 871 LSIRAEIGKV 880 (954)
T ss_pred HHHHHHHHHH
Confidence 9998887654
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-13 Score=149.76 Aligned_cols=305 Identities=10% Similarity=0.008 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
.++-..+.+.+++++|.++.. ...++|+|||+++..++.... . + ++-+++.+..
T Consensus 30 ~~~~~~~~~~la~~~~~~~~~--------~~i~~~~~gt~~l~~~~~~~~----~------~--------~~~vi~~~~~ 83 (355)
T TIGR03301 30 NDVTDQVRDRLLALAGGDDNH--------TCVLLQGSGTFAVEATIGSLV----P------R--------DGKLLVLING 83 (355)
T ss_pred HHHHHHHHHHHHHHhcCCCCC--------cEEEEeCCcHHHHHHHHHhcc----C------C--------CCeEEEECCC
Confidence 456667899999999998641 246789999999977765421 0 1 1223444444
Q ss_pred CchH-HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccc
Q psy11047 310 AHSS-VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388 (943)
Q Consensus 310 aHyS-v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~ 388 (943)
.+.+ +..++...+.+++.++.+.++.+|+++++++++++. .+.+++.++..|.+|.+.|+++|++
T Consensus 84 ~~~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~~~~G~~~~~~~i~~---------- 149 (355)
T TIGR03301 84 AYGERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADP----DITHVATVHHETTTGILNPLEAIAK---------- 149 (355)
T ss_pred chhhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCC----CceEEEEEecCCcccchhHHHHHHH----------
Confidence 4333 345554334478889988788999999999997642 2457777788888999999999999
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhh
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL 468 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~ 468 (943)
+|++||+ ++++|++++.. .. + . ...
T Consensus 150 ----------l~~~~~~-------~livD~~~s~g-~~--~---------------------------------~-~~~- 174 (355)
T TIGR03301 150 ----------VARSHGA-------VLIVDAMSSFG-AI--P---------------------------------I-DIE- 174 (355)
T ss_pred ----------HHHHcCC-------EEEEEeccccC-Cc--c---------------------------------c-chh-
Confidence 9999999 99999875432 11 0 0 011
Q ss_pred hhcCCCCeeEEEEcCCCccC-cc-------Ccchhhhhcc-cCccccccCCCCcccccCccccCCCCCcc-h----HHHH
Q psy11047 469 RIQGLGRAQNFTIVPSSLLR-VK-------NSGALHRTFN-VEPLYLRHENSGLAIDYMHWQIPLSKRFR-A----LKLW 534 (943)
Q Consensus 469 ~l~Gie~ADSItiDpHK~L~-vr-------~~~~L~~af~-~~p~YL~~~~~g~~~d~~~~tie~SRrfr-A----LklW 534 (943)
. -.+|.+..++|||++ .. ++..+ +.+. ....|.... .. ++..+.-.+..++. + ..+.
T Consensus 175 ---~-~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~-~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~t~~~~~~~a~~ 245 (355)
T TIGR03301 175 ---E-LDVDALIASANKCLEGVPGFGFVIARRDLL-EASAGNARSLYLDL--YD--QWAYMEKTGKWRFTPPTHTVYAFA 245 (355)
T ss_pred ---h-cCccEEEecCCcccccCCceeEEEECHHHH-HHhhCCCCCceeeH--HH--HHHHhhhcCCCCCCCcHHHHHHHH
Confidence 1 146999999999875 11 11111 1111 000010000 00 00000001111111 1 1112
Q ss_pred HHHHHHHHHH-HHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHH
Q psy11047 535 FVIRNFGIKG-LQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL 613 (943)
Q Consensus 535 ~tLr~~G~~G-l~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~ 613 (943)
.+++.+-.+| +.+.+++ ..++++++.+.
T Consensus 246 ~al~~~~~~g~~~~~~~~---------------------------------------------------~~~~~~~~~~~ 274 (355)
T TIGR03301 246 QALEELEAEGGVPARIAR---------------------------------------------------YRRNRELLVDG 274 (355)
T ss_pred HHHHHHHHcccHHHHHHH---------------------------------------------------HHHHHHHHHHH
Confidence 2222222222 2222222 24566777777
Q ss_pred HhCCCCeEEecCC--Ccc-EEEEEecCCC-hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHH
Q psy11047 614 VLGDPRFEIPAAR--HLG-MVVIRLLGEN-ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIR 689 (943)
Q Consensus 614 L~~~p~~eIl~~~--~l~-iV~Fr~~g~n-~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~ 689 (943)
|.+. ++++..++ ..+ +++|++++.. ....++.++|.++|.+ +.+.......++|++++..++.+|++++++.|+
T Consensus 275 L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~-i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~ 352 (355)
T TIGR03301 275 LRAL-GFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFV-IYPGKLTLADTFRIGTIGEIDAADIERLLEAIK 352 (355)
T ss_pred HHHc-CCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEE-EECCccccccEEEEecCCCCCHHHHHHHHHHHH
Confidence 7765 77876543 233 4678876421 2246788889888854 444322223689998888899999999999997
Q ss_pred HH
Q psy11047 690 NT 691 (943)
Q Consensus 690 ~~ 691 (943)
++
T Consensus 353 ~~ 354 (355)
T TIGR03301 353 DA 354 (355)
T ss_pred hh
Confidence 64
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-13 Score=150.54 Aligned_cols=314 Identities=11% Similarity=0.055 Sum_probs=188.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
+....+-..+++.+++++|.++.. ...+||+|||+++..++.+.- .+ ++-++++
T Consensus 31 ~~~~~~~~~~r~~la~l~~~~~~~--------~~i~~t~~~t~al~~~~~~l~----------~~--------~~~vlv~ 84 (363)
T TIGR02326 31 SDYNIVVEQIRQQLLALATAEEGY--------TSVLLQGSGTFAVEAVIGSAV----------PK--------DGKLLVV 84 (363)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCc--------eEEEEcCCCHHHHHHHHHhcC----------CC--------CCeEEEE
Confidence 344445556899999999997531 247899999999987765421 01 2234555
Q ss_pred cCCCchH-HHHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 307 SDQAHSS-VEKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 307 S~~aHyS-v~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
+...|.+ +.+.+. .| .+++.|+++.++.+|+++++++|+.+.. +.+|+.++..+.+|.+.|+++|++
T Consensus 85 ~~~~~~~~~~~~a~~~g-~~~~~v~~~~~~~~d~~~l~~~l~~~~~----~~~v~~~~~~~~tG~~~~i~~I~~------ 153 (363)
T TIGR02326 85 INGAYGARIVQIAEYLG-IPHHVVDTGEVEPPDVVEVEAILAADPA----ITHIALVHCETTTGILNPIEAVAK------ 153 (363)
T ss_pred eCChhhHHHHHHHHHcC-CceEEEeCCCCCCCCHHHHHHHHhhCCC----ccEEEEEeecCCccccCcHHHHHH------
Confidence 6656655 345553 45 4788899988999999999999986421 346777888999999999999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccccc
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV 464 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p 464 (943)
+|++||+ +++||++++.. .. | .+
T Consensus 154 --------------l~~~~g~-------~livD~~~~~g-~~--~---------------------------------~~ 176 (363)
T TIGR02326 154 --------------LAHRHGK-------VTIVDAMSSFG-GI--P---------------------------------ID 176 (363)
T ss_pred --------------HHHHcCC-------EEEEEcccccc-Cc--c---------------------------------cc
Confidence 9999999 99999987543 21 1 00
Q ss_pred chhhhhcCCCCeeEEEEcCCCccCcc-Ccchhh---hhcccCccccccCCCCcccccC-cc---c-cCCCCCcchHHHHH
Q psy11047 465 PASLRIQGLGRAQNFTIVPSSLLRVK-NSGALH---RTFNVEPLYLRHENSGLAIDYM-HW---Q-IPLSKRFRALKLWF 535 (943)
Q Consensus 465 ~~r~~l~Gie~ADSItiDpHK~L~vr-~~~~L~---~af~~~p~YL~~~~~g~~~d~~-~~---t-ie~SRrfrALklW~ 535 (943)
+..+ .+|.+..++|||++.. .-+.+. +.+. ++.....+...+.. .| . -.+.++|.+
T Consensus 177 -----~~~~-~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~----- 241 (363)
T TIGR02326 177 -----IAEL-HIDYLISSANKCIQGVPGFGFVIARQAELA----ACKGNARSLSLDLYDQWRCMEDNHGKWRFTS----- 241 (363)
T ss_pred -----hhhc-CccEEEecCccccccCCcceEEEECHHHHH----HhhcCCCceeecHHHHHHHHhccCCCCCCCC-----
Confidence 1111 4799999999998621 111110 0000 00000000000000 00 0 012233322
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHh
Q psy11047 536 VIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 615 (943)
Q Consensus 536 tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~ 615 (943)
...+..++.+.++.+++. .|++.++++ ..++++++.+.|+
T Consensus 242 --~~~~~~al~~al~~l~~~--------------g~~~~~~~~------------------------~~~~~~~l~~~L~ 281 (363)
T TIGR02326 242 --PTHVVHAFAQALLELEKE--------------GGVAARHQR------------------------YQQNQKTLVAGMR 281 (363)
T ss_pred --cHHHHHHHHHHHHHHHHh--------------hCHHHHHHH------------------------HHHHHHHHHHHHH
Confidence 222333434444432210 011111111 3566778888887
Q ss_pred CCCCeEEecCC--CccE-EEEEecCC-ChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 616 GDPRFEIPAAR--HLGM-VVIRLLGE-NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 616 ~~p~~eIl~~~--~l~i-V~Fr~~g~-n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
+. +++++.++ ..++ ++|++.+. ......+.+.|.++|.. +.+........+|++.+.+++.+|++++++.|+++
T Consensus 282 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~-v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~ 359 (363)
T TIGR02326 282 AL-GFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFV-IYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKA 359 (363)
T ss_pred Hc-CCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEE-EECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 76 77876543 4554 57887642 11246788888888754 44332223468999776678999999999998875
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-13 Score=152.25 Aligned_cols=315 Identities=10% Similarity=0.011 Sum_probs=198.3
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
++...++-..+.+++++++|.+.. ...++++|||+++..++... + .+| -.|+
T Consensus 37 ~~~~~~~~~~~~~~l~~~~g~~~~---------~~vi~~~~gt~a~~~a~~~~----~------~~G---------d~Vl 88 (401)
T PLN02409 37 SPAFPALTKELLEDVKYIFKTKSG---------TPFIFPTTGTGAWESALTNT----L------SPG---------DKVV 88 (401)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC---------CEEEEeCCcHHHHHHHHHhc----C------CCC---------CEEE
Confidence 677778888999999999998643 25789999999986665431 1 122 2366
Q ss_pred ecCCCchHH--HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 306 CSDQAHSSV--EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 306 ~S~~aHySv--~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+++..|++. ...+..-+.+++.++.+..+.+|+++++++|+.+.+ ..+.+|+.++..|.+|.+-|+++|++
T Consensus 89 v~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~--~~~k~v~~~~~~~~tG~~~~~~~i~~----- 161 (401)
T PLN02409 89 SFRIGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTN--HKIKAVCVVHNETSTGVTNDLAGVRK----- 161 (401)
T ss_pred EeCCCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcC--CCccEEEEEeecccccccCCHHHHHH-----
Confidence 677889875 344433234889999876667899999999986421 12678888999999999999999999
Q ss_pred ccccccccccCchHHH--HHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcc
Q psy11047 384 GLGFYKMKLQTNFPNF--ILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRL 461 (943)
Q Consensus 384 d~~~~~i~L~RrfR~i--ar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~ 461 (943)
+ |+++|+ +++||++++.. .. |
T Consensus 162 ---------------l~~~~~~g~-------~~vvD~v~s~g-~~--~-------------------------------- 184 (401)
T PLN02409 162 ---------------LLDCAQHPA-------LLLVDGVSSIG-AL--D-------------------------------- 184 (401)
T ss_pred ---------------HHhhhccCc-------EEEEEcccccC-Cc--c--------------------------------
Confidence 9 999999 99999998744 22 1
Q ss_pred cccchhhhhcCCCCeeEEEEcCCCccCccC--------cchhhhhcc--cCccccccCCCCcccccCccccCCCC-Ccch
Q psy11047 462 HCVPASLRIQGLGRAQNFTIVPSSLLRVKN--------SGALHRTFN--VEPLYLRHENSGLAIDYMHWQIPLSK-RFRA 530 (943)
Q Consensus 462 ~~p~~r~~l~Gie~ADSItiDpHK~L~vr~--------~~~L~~af~--~~p~YL~~~~~g~~~d~~~~tie~SR-rfrA 530 (943)
.. +.. -.+|.+.+++|||++.+. +..+..... ..+.|+... ....+.-.+.+ .+
T Consensus 185 -id-----~~~-~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~-- 249 (401)
T PLN02409 185 -FR-----MDE-WGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWA------DYLKFYKLGTYWPY-- 249 (401)
T ss_pred -cc-----ccc-cCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHH------HHHHHHhcCCCCCC--
Confidence 00 011 157999999999997221 111111100 011121100 00000001111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHH
Q psy11047 531 LKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKF 610 (943)
Q Consensus 531 LklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l 610 (943)
+....+..++.+.++.+.+ .|++.++++ +.++++++
T Consensus 250 -----Tp~~~~~~al~~al~~~~~---------------~G~e~i~~~------------------------~~~l~~~l 285 (401)
T PLN02409 250 -----TPSIQLLYGLRAALDLIFE---------------EGLENVIAR------------------------HARLGEAT 285 (401)
T ss_pred -----CccHHHHHHHHHHHHHHHH---------------hhHHHHHHH------------------------HHHHHHHH
Confidence 2233334455555554321 233333332 46788899
Q ss_pred HHHHhCCCCeEEecCC---Cc-cEEEEEec-CCChHHHHHHHHHhccCcEEEeecccC-CCcEEEEeecCCCCHHHHHHH
Q psy11047 611 EALVLGDPRFEIPAAR---HL-GMVVIRLL-GENILTEKLLKRLNSKGRLHCVPASLR-IQGLGRAQNFTRTTNDDITRD 684 (943)
Q Consensus 611 ~~~L~~~p~~eIl~~~---~l-~iV~Fr~~-g~n~l~~~Ll~~L~~~G~~~~s~t~~~-g~~~lR~v~~~~tt~edId~l 684 (943)
.+.|.+. +++++.+. .. .+++|+++ +.+ ...+.++|..+..+.+...... ...++|+....+++.+||..+
T Consensus 286 ~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~~~--~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~ 362 (401)
T PLN02409 286 RLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEGID--SAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGA 362 (401)
T ss_pred HHHHHHc-CCeeccCChhhcccceEEEeCCCCCC--HHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHH
Confidence 9988876 78988642 23 56678874 333 3567777655444555543222 346899977778899999999
Q ss_pred HHHHHHHHHH
Q psy11047 685 WNEIRNTATE 694 (943)
Q Consensus 685 l~~I~~~~~~ 694 (943)
++++.++..+
T Consensus 363 ~~~~~~~l~~ 372 (401)
T PLN02409 363 LAGVEMVLKD 372 (401)
T ss_pred HHHHHHHHHH
Confidence 9999886443
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=159.34 Aligned_cols=308 Identities=15% Similarity=0.070 Sum_probs=188.9
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEc---CChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQ---TTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfT---sGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.......+|..+++.++++||.+.+ .-+++ +|||+||+.++.+- + .+|
T Consensus 74 g~~~~~~iE~~ar~~~a~lf~a~~~----------~~~~~~~~~sgt~an~~v~~al----~------~~g--------- 124 (452)
T PTZ00094 74 GNEVVDKIENLCQKRALEAFGLDPE----------EWGVNVQPYSGSPANFAVYTAL----L------QPH--------- 124 (452)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcc----------cceeecCCCchHHHHHHHHHHh----c------CCC---------
Confidence 3445678898899999999998653 22345 89999998877652 1 122
Q ss_pred eEEEecCCCchHHHHHH-HH--------CC-ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc
Q psy11047 302 LVAYCSDQAHSSVEKAG-LI--------GL-VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD 371 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa-~L--------G~-~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID 371 (943)
-.|+++...|.+....+ .+ |. ..+..++++.+|.+|.++|++.++... |.+|+.+ .+++|.+-
T Consensus 125 d~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~-----~~lvi~~--~s~~g~~~ 197 (452)
T PTZ00094 125 DRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFR-----PKLIIAG--ASAYPRDI 197 (452)
T ss_pred CEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhC-----CCEEEEe--CCCCCCcc
Confidence 25778888997764433 11 10 133455677789999999999997531 4344432 44699999
Q ss_pred cHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHH
Q psy11047 372 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKL 451 (943)
Q Consensus 372 pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kl 451 (943)
|+++|++ +|+++|. ++|||+|++.+ .+ +.+
T Consensus 198 di~~I~~--------------------i~~~~ga-------~l~vDaaq~~G-~i--~~~-------------------- 227 (452)
T PTZ00094 198 DYKRFRE--------------------ICDSVGA-------YLMADIAHTSG-LV--AAG-------------------- 227 (452)
T ss_pred CHHHHHH--------------------HHHHcCC-------EEEEeccchhc-cc--cCC--------------------
Confidence 9999999 9999999 99999999877 32 100
Q ss_pred HHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC-ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcch
Q psy11047 452 LKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR-VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRA 530 (943)
Q Consensus 452 l~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrA 530 (943)
..+ ..+.++|.+++++|||++ .+ +..+.-. ....+++... ... .....+++
T Consensus 228 ----------~~~------~~~~~~D~l~~S~hK~l~GP~-Gg~l~~~-~~~~~~l~~~-~~~---~~~p~~~G------ 279 (452)
T PTZ00094 228 ----------VLP------SPFPYADVVTTTTHKSLRGPR-SGLIFYR-KKVKPDIENK-INE---AVFPGLQG------ 279 (452)
T ss_pred ----------CCC------CCCCCCcEEEcCCccCCCCCC-ceEEEEe-cccchHHHHh-hcc---ccCCCCCC------
Confidence 001 012368999999999986 33 2222000 0000011100 000 00001112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHH
Q psy11047 531 LKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKF 610 (943)
Q Consensus 531 LklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l 610 (943)
+....++.|+...++.+.. .+.+.+++ +..+++++|
T Consensus 280 -----~~~~~~iaal~~al~~~~~---------------~~~~~~~~------------------------~i~~l~~~l 315 (452)
T PTZ00094 280 -----GPHNHQIAAIAVQLKEVQS---------------PEWKEYAK------------------------QVLKNAKAL 315 (452)
T ss_pred -----CchHHHHHHHHHHHHHHhC---------------hhHHHHHH------------------------HHHHHHHHH
Confidence 1233355566666665321 00111111 135688899
Q ss_pred HHHHhCCCCeEEecC---CCccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc------CCCcEEEEeecCCCC----
Q psy11047 611 EALVLGDPRFEIPAA---RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL------RIQGLGRAQNFTRTT---- 677 (943)
Q Consensus 611 ~~~L~~~p~~eIl~~---~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~------~g~~~lR~v~~~~tt---- 677 (943)
.+.|.+. ++++..+ .+..+|.|...+.+ .+.+...|.+.|. +++...+ ...+.+|++++..||
T Consensus 316 ~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~~~--~~~~~~~L~~~gI-~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~ 391 (452)
T PTZ00094 316 AAALEKR-GYDLVTGGTDNHLVLVDLRPFGIT--GSKMEKLLDAVNI-SVNKNTIPGDKSALNPSGVRLGTPALTTRGAK 391 (452)
T ss_pred HHHHHhC-CcEEecCCCCCceEeecCCcCCCC--HHHHHHHHHHCCc-EEecccCCCCCcCCCCCeEEECCHHHHhCCCC
Confidence 9888775 8888742 34566677665543 4567777776675 4532211 124789998888887
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11047 678 NDDITRDWNEIRNTATE 694 (943)
Q Consensus 678 ~edId~ll~~I~~~~~~ 694 (943)
++||+++++.|.++...
T Consensus 392 ~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 392 EKDFKFVADFLDRAVKL 408 (452)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999888765
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-13 Score=145.27 Aligned_cols=329 Identities=12% Similarity=0.011 Sum_probs=195.1
Q ss_pred HHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhh
Q psy11047 207 LLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKY 286 (943)
Q Consensus 207 ilgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~ 286 (943)
++..+.....+.+...+...+...++|..+.++++..+|.+.. ....++|+|||+++..++.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--------~~~~~~~~~~t~a~~~~~~~~~------- 80 (350)
T cd00609 16 VLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVP--------PEEIVVTNGAQEALSLLLRALL------- 80 (350)
T ss_pred HHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC--------cceEEEecCcHHHHHHHHHHhC-------
Confidence 3333333455666667777788899999999999998886433 1357899999999877666532
Q ss_pred cccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCH--HHHHHHHHHhhccCCCcEEEEEecCC
Q psy11047 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRG--DKLIEAIERDKKKHLIPFFIFSGLAL 364 (943)
Q Consensus 287 ~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~--daLe~aI~~d~~kG~~P~~VVaTaGT 364 (943)
.+ ...|+++..+|.++..++.....+++.++.++++.++. +.++..+.. .+.+|+.+..+
T Consensus 81 ---~~---------g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~v~i~~~~ 142 (350)
T cd00609 81 ---NP---------GDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTP------KTKLLYLNNPN 142 (350)
T ss_pred ---CC---------CCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCc------cceEEEEECCC
Confidence 11 23588899999999999865446899999988888876 444443322 36788888899
Q ss_pred CcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecch
Q psy11047 365 PAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE 444 (943)
Q Consensus 365 T~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ 444 (943)
+.+|.+.|++++.+ +..+|+++|+ |+++|+|++++ .+. ..
T Consensus 143 ~~tG~~~~~~~l~~-----------------l~~~~~~~~~-------~~ivD~a~~~~-~~~-~~-------------- 182 (350)
T cd00609 143 NPTGAVLSEEELEE-----------------LAELAKKHGI-------LIISDEAYAEL-VYD-GE-------------- 182 (350)
T ss_pred CCCCcccCHHHHHH-----------------HHHHHHhCCe-------EEEEecchhhc-eeC-Cc--------------
Confidence 99999998776653 1119999999 99999999876 220 00
Q ss_pred hhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCc-cccccCCCCcccccCccccC
Q psy11047 445 NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEP-LYLRHENSGLAIDYMHWQIP 523 (943)
Q Consensus 445 ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p-~YL~~~~~g~~~d~~~~tie 523 (943)
.... . . ..+...+|-+..+.||+++..... + ..+.... .++..-. ....+...
T Consensus 183 ----------------~~~~-~-~-~~~~~~~~~~~~s~~K~~~~~g~~-~-G~i~~~~~~~~~~~~-----~~~~~~~~ 236 (350)
T cd00609 183 ----------------PPPA-L-A-LLDAYERVIVLRSFSKTFGLPGLR-I-GYLIAPPEELLERLK-----KLLPYTTS 236 (350)
T ss_pred ----------------cccc-c-c-CcCccCcEEEEeecccccCCcccc-e-EEEecCHHHHHHHHH-----HHHHhccc
Confidence 0000 0 0 011234688888999998722110 0 0000111 1111000 00000000
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHH
Q psy11047 524 LSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQS 603 (943)
Q Consensus 524 ~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~ 603 (943)
++.......++..++... +++.+..++ .
T Consensus 237 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~---------------------------------------------------~ 264 (350)
T cd00609 237 GPSTLSQAAAAAALDDGE-EHLEELRER---------------------------------------------------Y 264 (350)
T ss_pred CCChHHHHHHHHHHhCcH-HHHHHHHHH---------------------------------------------------H
Confidence 111111222232333221 233332222 2
Q ss_pred HHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc--CCCcEEEEeecCCCCHHHH
Q psy11047 604 VRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL--RIQGLGRAQNFTRTTNDDI 681 (943)
Q Consensus 604 ~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~--~g~~~lR~v~~~~tt~edI 681 (943)
.++++++.+.|.+.+...+..+...+.+.|++.+.. ....+.+.+.+.|......... .+..++|++++.. .+||
T Consensus 265 ~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i 341 (350)
T cd00609 265 RRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGD-DEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEEL 341 (350)
T ss_pred HHHHHHHHHHHHhcCCccccCCCccEEEEEecCCCC-hHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHH
Confidence 456778888888776655434455666777775431 2345556666767544332222 2567999966555 9999
Q ss_pred HHHHHHHH
Q psy11047 682 TRDWNEIR 689 (943)
Q Consensus 682 d~ll~~I~ 689 (943)
++++++|+
T Consensus 342 ~~~~~al~ 349 (350)
T cd00609 342 EEALERLA 349 (350)
T ss_pred HHHHHHhh
Confidence 99999886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-13 Score=149.12 Aligned_cols=305 Identities=15% Similarity=0.157 Sum_probs=182.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
+...|...++|. .+++++|.+ ..++|+|||+|+..++.+.+. .+ .-
T Consensus 14 ~~~~~~~~~~~~----~la~~~~~~------------~~~~~~sgt~al~~~l~~l~~---------~~---------gd 59 (352)
T cd00616 14 LTLGPKVREFEK----AFAEYLGVK------------YAVAVSSGTAALHLALRALGI---------GP---------GD 59 (352)
T ss_pred ccCCHHHHHHHH----HHHHHhCCC------------eEEEECCHHHHHHHHHHHcCC---------CC---------CC
Confidence 345677777766 567788853 368999999999888765310 12 23
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
.|+++..+|.+...++...+.+++.++++. ++.+|+++|++.++.+ +.+|+.+. .+|.+.|+++|.+
T Consensus 60 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~---~~G~~~~~~~i~~--- 127 (352)
T cd00616 60 EVIVPSFTFVATANAILLLGATPVFVDIDPDTYNIDPELIEAAITPR------TKAIIPVH---LYGNPADMDAIMA--- 127 (352)
T ss_pred EEEeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcCHHHHHHhcCcC------CeEEEEEC---CCCCcCCHHHHHH---
Confidence 578899999999888854445788888876 7899999999988543 45555543 5788999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcc
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRL 461 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~ 461 (943)
+|+++|+ ++++|+|++.+..+
T Consensus 128 -----------------l~~~~~i-------~li~D~a~~~g~~~----------------------------------- 148 (352)
T cd00616 128 -----------------IAKRHGL-------PVIEDAAQALGATY----------------------------------- 148 (352)
T ss_pred -----------------HHHHcCC-------eEEEECCCCCCCeE-----------------------------------
Confidence 9999999 99999998754111
Q ss_pred cccchhhhhcCCCCeeEEEEcCCCccCccCcchhh-h--hcccCccccccCCC-CcccccCccccCCCCCcchHHHHHHH
Q psy11047 462 HCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH-R--TFNVEPLYLRHENS-GLAIDYMHWQIPLSKRFRALKLWFVI 537 (943)
Q Consensus 462 ~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~-~--af~~~p~YL~~~~~-g~~~d~~~~tie~SRrfrALklW~tL 537 (943)
... .+.....++.+++.+|||+.......+. . .+......+...+. .....+.......+-+...+..++.+
T Consensus 149 -~~~---~~~~~~d~~~~S~~~~K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~ 224 (352)
T cd00616 149 -KGR---KVGTFGDAGAFSFHPTKNLTTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGL 224 (352)
T ss_pred -CCE---EcccCcceeEEcCCCCCCCcccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHH
Confidence 000 0101123455555567999622221110 0 00000001111100 00000001111111112222222222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCC
Q psy11047 538 RNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 617 (943)
Q Consensus 538 r~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~ 617 (943)
....++.+.+++ ..++++++.+.|.+.
T Consensus 225 --~~l~~~~~~~~~---------------------------------------------------~~~~~~~~~~~L~~~ 251 (352)
T cd00616 225 --AQLEKLDEIIAR---------------------------------------------------RREIAERYKELLADL 251 (352)
T ss_pred --HHHHhhHHHHHH---------------------------------------------------HHHHHHHHHHHhcCC
Confidence 122333333322 356889999999999
Q ss_pred CCeEEecCC-----CccEEEEEecCC-ChHHHHHHHHHhccCcE---EEeecccCC--------------------CcEE
Q psy11047 618 PRFEIPAAR-----HLGMVVIRLLGE-NILTEKLLKRLNSKGRL---HCVPASLRI--------------------QGLG 668 (943)
Q Consensus 618 p~~eIl~~~-----~l~iV~Fr~~g~-n~l~~~Ll~~L~~~G~~---~~s~t~~~g--------------------~~~l 668 (943)
|+++++.++ ...+++|++.+. ......+.+.|.++|.. ++.+..... ...+
T Consensus 252 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l 331 (352)
T cd00616 252 PGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVL 331 (352)
T ss_pred CCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeE
Confidence 999988643 346889988631 12356788888887752 222221110 2589
Q ss_pred EEeecCCCCHHHHHHHHHHHH
Q psy11047 669 RAQNFTRTTNDDITRDWNEIR 689 (943)
Q Consensus 669 R~v~~~~tt~edId~ll~~I~ 689 (943)
|+.+++++|++||++++++|+
T Consensus 332 ~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 332 SLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred EccCCCCCCHHHHHHHHHHhC
Confidence 999999999999999998874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.8e-14 Score=157.63 Aligned_cols=330 Identities=10% Similarity=-0.028 Sum_probs=202.1
Q ss_pred cCCCChHHHHHHHHHHHH----hccCccccCC---hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCC-hHHH
Q psy11047 199 PALNSYPSLLGDMLSDAI----NCLGFTWASS---PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTT-ASES 270 (943)
Q Consensus 199 ~~~~s~~silgd~L~~al----N~n~~~~~~S---PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsG-GTeA 270 (943)
+++...|.-+.+.+...+ |...+.+..+ +.+.++-.++++.++++||.+.+ ...+||+| ||+|
T Consensus 5 pGp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~---------~~vvf~~gs~T~a 75 (355)
T cd00611 5 AGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDN---------YKVLFLQGGATGQ 75 (355)
T ss_pred CCCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC---------ceEEEEcCCchHH
Confidence 444444444444444444 5666666666 66778888999999999998654 36899988 9999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCc-CHHHHH-HHHHHh
Q psy11047 271 TLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSL-RGDKLI-EAIERD 348 (943)
Q Consensus 271 NL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grm-D~daLe-~aI~~d 348 (943)
+..++..- .. ++ .+..+|+++...|.+.+-+-..| .+++.++++++|.. +..++. ..+..
T Consensus 76 ~~~~~~~l----~~------~~------~~~~~i~~g~~~~~~~~~a~~~g-~~~~~~~~~~~g~~~~~~~~~~~~~~~- 137 (355)
T cd00611 76 FAAVPLNL----LG------DK------GTADYVVTGAWSAKAAKEAKRYG-GVVVIVAAKEEGKYTKIPDVETWDLAP- 137 (355)
T ss_pred HHHHHHhc----CC------CC------CeEEEEECCHHHHHHHHHHHhcC-CCcEEEecccccCCCCCCCHhhcCCCC-
Confidence 76655431 10 11 12345666666666644444455 47888887655433 422222 23322
Q ss_pred hccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcccc
Q psy11047 349 KKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI 428 (943)
Q Consensus 349 ~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeL 428 (943)
.+.+|+.|+.+|.+|.. +. + +++.||+ .+.|||++..+ ...|
T Consensus 138 -----~~~lV~~~h~~t~tG~~--~~---~--------------------i~~~~g~-------~~~VDa~qs~g-~~~i 179 (355)
T cd00611 138 -----DAAYVHYCSNETIHGVE--FD---E--------------------VPDTGGV-------PLVADMSSNIL-SRPI 179 (355)
T ss_pred -----CCCEEEEeCCcccccEE--cc---e--------------------ecccCCC-------eEEEEcccccc-CCCC
Confidence 26689999999999997 22 3 4445999 99999998776 3211
Q ss_pred ccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchh--h-hhcccCccc
Q psy11047 429 PAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL--H-RTFNVEPLY 505 (943)
Q Consensus 429 p~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L--~-~af~~~p~Y 505 (943)
+ . +..|-...++||+++...-+.+ . +.+...+++
T Consensus 180 -----------------------------------d-v-------~~~~~~~ss~~K~lGP~G~g~l~~~~~~~~~~~~~ 216 (355)
T cd00611 180 -----------------------------------D-V-------SKFGVIYAGAQKNLGPAGVTVVIVRKDLLGKARKI 216 (355)
T ss_pred -----------------------------------C-H-------HHhCEEEeecccccCCCceEEEEECHHHHhhcccC
Confidence 0 1 1113233459999882211111 0 000000011
Q ss_pred cccCCCCcccccCccc-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc-chhhhhccccccc
Q psy11047 506 LRHENSGLAIDYMHWQ-IPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCL-GTAMIVKGLGFYK 583 (943)
Q Consensus 506 L~~~~~g~~~d~~~~t-ie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~-g~~~i~~~~~~~~ 583 (943)
.. .+.+|. ...... .+.|....|+.|+.+.++.+.+ . |++.|.++
T Consensus 217 ~~--------~~~~~~~~~~~~~-----~~~Tpn~~~i~~L~aal~~l~~---------------~gg~e~i~~~----- 263 (355)
T cd00611 217 TP--------SMLNYKTHADNNS-----LYNTPPTFAIYMMGLVLKWLKE---------------QGGVEAMEKR----- 263 (355)
T ss_pred CC--------CcccHHHHHhcCC-----CCCCChHHHHHHHHHHHHHHHH---------------cCCHHHHHHH-----
Confidence 10 011111 000000 1347788889999999998643 3 45555443
Q ss_pred ccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeE-EecC--CCc-cEEEEEecCCChHHHHHHHHHhccCcEEEee
Q psy11047 584 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE-IPAA--RHL-GMVVIRLLGENILTEKLLKRLNSKGRLHCVP 659 (943)
Q Consensus 584 i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~e-Il~~--~~l-~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~ 659 (943)
+.++++++.+.|.++|++. ...+ ... .+++|++++. .+..++++.+.++|. + .+
T Consensus 264 -------------------~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~-~l~~~~~~~~~r~G~-~-~~ 321 (355)
T cd00611 264 -------------------NRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE-ELEKEFLKEAEAAGM-I-GL 321 (355)
T ss_pred -------------------HHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCCh-hhhHHHHHHHHHCCC-c-cc
Confidence 6789999999999998863 2211 234 4599998875 345666677778887 3 44
Q ss_pred cccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 660 ASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 660 t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
...+..+.+|+++++++|.+||++++++|+++
T Consensus 322 ~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 322 KGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred CCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 33333478999999999999999999999885
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-12 Score=146.39 Aligned_cols=298 Identities=10% Similarity=0.005 Sum_probs=183.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
...+.+|+++|.++ ..+++|||++|..++.+-. .+| -.|+++...|+|+
T Consensus 55 ~~~e~lA~~~g~~~------------~~i~~g~~~a~~~~~~~l~----------~~g---------d~Vl~~~~~h~s~ 103 (370)
T TIGR02539 55 DFLEDLAEFLGMDE------------ARVTHGAREGKFAVMHALC----------KEG---------DWVVLDGLAHYTS 103 (370)
T ss_pred HHHHHHHHHhCCCc------------eEEECChHHHHHHHHHHhh----------CCC---------CEEEECCcccHHH
Confidence 44566899999864 4679999999876655321 122 2477788999999
Q ss_pred HHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhcc-CCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKK-HLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~k-G~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
..++.+.+.+++.++.+ .++.+|+++|++.|...... +..+.+|+.+..++.+|.+.|+++|.+
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~------------- 170 (370)
T TIGR02539 104 YVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAK------------- 170 (370)
T ss_pred HHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHH-------------
Confidence 88776656688888875 36889999999999753221 123667888888888999999999999
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhc
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQ 471 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~ 471 (943)
+|++||+ ++++|+||+.+ .+ + .+ ..
T Consensus 171 -------la~~~~~-------~livDea~~~g-~~--~---------------------------------~~-~~---- 195 (370)
T TIGR02539 171 -------VCREKGV-------PLLLNCAYTVG-RM--P---------------------------------VS-AK---- 195 (370)
T ss_pred -------HHHHcCC-------eEEEECccccC-Cc--C---------------------------------CC-HH----
Confidence 9999999 99999999765 21 1 00 00
Q ss_pred CCCCeeEEEEcCCCccCccCc-chhhhhcccCccccccCCCCcccccCcccc-CCCCC-cchHHHHHHHHHHHHHHHHHH
Q psy11047 472 GLGRAQNFTIVPSSLLRVKNS-GALHRTFNVEPLYLRHENSGLAIDYMHWQI-PLSKR-FRALKLWFVIRNFGIKGLQKH 548 (943)
Q Consensus 472 Gie~ADSItiDpHK~L~vr~~-~~L~~af~~~p~YL~~~~~g~~~d~~~~ti-e~SRr-frALklW~tLr~~G~~Gl~~~ 548 (943)
. ..+|.++.++|||++..-+ +.+... ..-..++...... ++...... .++.. ..+..++.++. ...+.
T Consensus 196 ~-~~~di~v~s~sK~~~~~g~~G~l~~~-~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~al~-----~~~~~ 266 (370)
T TIGR02539 196 E-IGADFIVGSGHKSMAASGPCGVLGMS-EEWEDIVLRKSRY--SPVKEVELLGCTSRGAPIVTMMASFP-----HVVER 266 (370)
T ss_pred H-cCCCEEEeeCcccccCCCCEEEEEEC-HHHHhhhcccccC--CccceeeeecccccccHHHHHHHHHH-----HHHHH
Confidence 0 1468999999999872110 111000 0000111110000 00000001 11111 12222222221 11222
Q ss_pred HHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEe--cCC
Q psy11047 549 IREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIP--AAR 626 (943)
Q Consensus 549 I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl--~~~ 626 (943)
+++.. +..+.++++.+.|.+. +++++ .+.
T Consensus 267 l~~~~------------------------------------------------~~~~~~~~l~~~L~~~-g~~~~~~~~s 297 (370)
T TIGR02539 267 VKRWD------------------------------------------------EEVKKTRWFVAELEDI-GFIQLGQKPK 297 (370)
T ss_pred HHHHH------------------------------------------------HHHHHHHHHHHHHHhC-CcEEEccCCC
Confidence 22210 0244567888888886 68874 367
Q ss_pred CccEEEEEecCCC-------hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 627 HLGMVVIRLLGEN-------ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 627 ~l~iV~Fr~~g~n-------~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
..|++.|++++.. .....+.++|.++|.+.+.+ ....++|++.+ ..+.+|++++++.|+++.+
T Consensus 298 ~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~---~~~~~iRis~~-~~t~e~i~~l~~~L~~~~~ 367 (370)
T TIGR02539 298 EHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRS---GQTKYFKLSVY-GLTKEQVEYVVDSFEEIVE 367 (370)
T ss_pred cCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccC---CcceEEEEEec-CCCHHHHHHHHHHHHHHHH
Confidence 8999999875321 12346888899888742322 22458999654 4599999999999987754
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-13 Score=150.66 Aligned_cols=295 Identities=14% Similarity=0.058 Sum_probs=176.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
+...++|. .||+++|.+. .+||+|||+||..++.+.. .+| -.+++
T Consensus 99 ~~~~~le~----~la~~~g~~~------------~~~~~sG~~An~~~l~~l~----------~~g---------~~v~~ 143 (407)
T PRK07179 99 SPKPQFEK----KLAAFTGFES------------CLLCQSGWAANVGLLQTIA----------DPN---------TPVYI 143 (407)
T ss_pred hHHHHHHH----HHHHHhCCCc------------EEEECCHHHHHHHHHHHhC----------CCC---------CEEEE
Confidence 45666764 6788888742 5899999999988776421 111 24677
Q ss_pred cCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccc
Q psy11047 307 SDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLG 386 (943)
Q Consensus 307 S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~ 386 (943)
+..+|.|+..++......+..++ ..|+++|++.|++. .+.+|+...-.+.+|.+-|+++|.+
T Consensus 144 ~~~~h~s~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~-----~~~lV~v~~v~n~tG~i~pl~~I~~-------- 205 (407)
T PRK07179 144 DFFAHMSLWEGVRAAGAQAHPFR-----HNDVDHLRRQIERH-----GPGIIVVDSVYSTTGTIAPLADIVD-------- 205 (407)
T ss_pred ECCcCHHHHHHHHHCCCeEEEec-----CCCHHHHHHHHHhc-----CCeEEEECCCCCCCCccccHHHHHH--------
Confidence 89999999877754333443332 25899999998753 1556666667788999999999999
Q ss_pred cccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccch
Q psy11047 387 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA 466 (943)
Q Consensus 387 ~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~ 466 (943)
+|++||+ ++|+|.+++.+ .+ | .+|.-....
T Consensus 206 ------------l~~~~~~-------~livDea~~~g-~~--------g---------------------~~g~g~~~~- 235 (407)
T PRK07179 206 ------------IAEEFGC-------VLVVDESHSLG-TH--------G---------------------PQGAGLVAE- 235 (407)
T ss_pred ------------HHHHcCC-------EEEEECccccc-Cc--------C---------------------CCCCchHHh-
Confidence 9999999 99999999754 21 0 001000111
Q ss_pred hhhhcCC-CCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHH
Q psy11047 467 SLRIQGL-GRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKG 544 (943)
Q Consensus 467 r~~l~Gi-e~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~G 544 (943)
+ ++ +.+|.++.++||+++.+-+..+.+. . -..++..-. .... ..++-. ..+..+..+++..- .
T Consensus 236 ---~-~~~~~vdi~~~S~sK~~g~~~G~l~~~~-~-~~~~~~~~~-----~~~~--~~~t~~~~~~aa~~aal~~~~--~ 300 (407)
T PRK07179 236 ---L-GLTSRVHFITASLAKAFAGRAGIITCPR-E-LAEYVPFVS-----YPAI--FSSTLLPHEIAGLEATLEVIE--S 300 (407)
T ss_pred ---c-CCCCCCCEEEeechHhhhccCeEEEeCH-H-HHHHHHHhC-----cCee--eCCCCCHHHHHHHHHHHHHHh--c
Confidence 1 22 3579999999999984422111000 0 000111000 0000 011101 01111111111110 0
Q ss_pred HHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEec
Q psy11047 545 LQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPA 624 (943)
Q Consensus 545 l~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~ 624 (943)
..+..++ ..+++++|.+.|.+. ++++..
T Consensus 301 ~~~~~~~---------------------------------------------------l~~~~~~l~~~L~~~-g~~v~~ 328 (407)
T PRK07179 301 ADDRRAR---------------------------------------------------LHANARFLREGLSEL-GYNIRS 328 (407)
T ss_pred CHHHHHH---------------------------------------------------HHHHHHHHHHHHHHc-CCCCCC
Confidence 0011111 245677788888776 677663
Q ss_pred CCCccEEEEEecCCChHHHHHHHHHhccCcE---EEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 625 ARHLGMVVIRLLGENILTEKLLKRLNSKGRL---HCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 625 ~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~---~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
..+++.+.+... .-...+.+.|.++|.+ ++.+....+..++|++++..+|++||+++++.|+++.++
T Consensus 329 --~~~i~~l~~~~~-~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 398 (407)
T PRK07179 329 --ESQIIALETGSE-RNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDE 398 (407)
T ss_pred --CCCEEEEEeCCH-HHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 457888876421 2246777888888864 233433334679999999999999999999999877554
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-13 Score=151.06 Aligned_cols=313 Identities=10% Similarity=-0.027 Sum_probs=192.1
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcC-ChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQT-TASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTs-GGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
.++...++-.++++.+++++|.++. ...+|++ |||+++..++..- ++ + ++..
T Consensus 42 r~~~f~~~~~~~r~~l~~l~~~~~~---------~~v~~~~gs~T~~~~~~~~~l----~~------~--------~~~~ 94 (378)
T PRK03080 42 RQKPVKALLKRVIEGTRELLSLPEG---------YEVGIVPGSDTGAWEMALWSL----LG------A--------RRVD 94 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCC---------ceEEEECCchHHHHHHHHHhc----CC------C--------Ccce
Confidence 3466778888999999999999753 2567775 8999976665421 10 1 1222
Q ss_pred EEecCCCchHHHH--HH-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 304 AYCSDQAHSSVEK--AG-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 304 V~~S~~aHySv~K--Aa-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
++. ...|.+-.. ++ .+|..+++.++.+..+.+|+++++ . +..|+.++.+|.+|.+.|+++|++
T Consensus 95 vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~g~~~d~~~i~----~-------~~~V~~~h~~t~tG~~~pi~~I~~-- 160 (378)
T PRK03080 95 HLA-WESFGSKWATDVVKQLKLEDPRVLEADYGSLPDLSAVD----F-------DRDVVFTWNGTTTGVRVPVARWIG-- 160 (378)
T ss_pred EEE-eCHHHHHHHHHHHhhcCCCCceEeccCCCCCCCHhhcC----C-------CCCEEEEecCCccceeccchhhcc--
Confidence 333 457777433 22 356548888888777788877633 1 224889999999999999999875
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCc
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGR 460 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~ 460 (943)
+++|+ ++.|||+++.+ .. |
T Consensus 161 --------------------~~~g~-------~~vVDa~qs~G-~~--p------------------------------- 179 (378)
T PRK03080 161 --------------------ADREG-------LTICDATSAAF-AL--P------------------------------- 179 (378)
T ss_pred --------------------ccCCC-------eEEEecccccc-cC--C-------------------------------
Confidence 46899 99999998766 32 1
Q ss_pred ccccchhhhhcCCCCeeEEEEcCCCccCccC--------cchhhhhcccCccccccCCCCcccccCcccc---CCCCCcc
Q psy11047 461 LHCVPASLRIQGLGRAQNFTIVPSSLLRVKN--------SGALHRTFNVEPLYLRHENSGLAIDYMHWQI---PLSKRFR 529 (943)
Q Consensus 461 ~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~--------~~~L~~af~~~p~YL~~~~~g~~~d~~~~ti---e~SRrfr 529 (943)
.. + ..+|.+.+++||||+.+. +..+.. + .| +..... ...+.++.. ...+++.
T Consensus 180 --id-----v---~~iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~-~--~p-~~~~~~---~~~~~~~~~~~~~~~~~~~ 242 (378)
T PRK03080 180 --LD-----W---SKLDVYTFSWQKVLGGEGGHGMAILSPRAVER-L--ES-YTPARP---IPKFFRLTKGGKAIENSFK 242 (378)
T ss_pred --CC-----H---HHCcEEEEehhhhCCCCCceEEEEECHHHHHh-h--hc-ccCCCC---CchhheeccchHHhhhhhc
Confidence 11 1 125999999999998222 112211 1 11 110000 001111111 0111222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc-chhhhhcccccccccccCCCcccccccCCcHHHHHHHH
Q psy11047 530 ALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCL-GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 608 (943)
Q Consensus 530 ALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~-g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~ 608 (943)
. ..+.+....+..++.+.++.+.+ . |++.+.++ +.++++
T Consensus 243 ~-~t~~tp~i~~i~~l~~al~~l~~---------------~gG~e~i~~r------------------------~~~l~~ 282 (378)
T PRK03080 243 G-QTINTPSMLTVEDYLDQLDWANS---------------IGGLDALIAR------------------------TAANAS 282 (378)
T ss_pred C-CcccCchHHHHHHHHHHHHHHHH---------------cCCHHHHHHH------------------------HHHHHH
Confidence 1 11224555666676777777542 2 44444332 577899
Q ss_pred HHHHHHhCCCCeEEecC-C---CccEEEEEecCCC-hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHH
Q psy11047 609 KFEALVLGDPRFEIPAA-R---HLGMVVIRLLGEN-ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 609 ~l~~~L~~~p~~eIl~~-~---~l~iV~Fr~~g~n-~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ 683 (943)
++.+.|.+.++++++.+ + ...+++|++++.+ .....+..++.++|.+..+.......+.+|++++.++|.+||++
T Consensus 283 ~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~ 362 (378)
T PRK03080 283 VLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEA 362 (378)
T ss_pred HHHHHHHhCCCcccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHH
Confidence 99999999988888742 2 2358999987511 23455666776666433221111124689999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy11047 684 DWNEIRNTATEIL 696 (943)
Q Consensus 684 ll~~I~~~~~~ll 696 (943)
++++|+++.+++.
T Consensus 363 l~~al~~~~~~~~ 375 (378)
T PRK03080 363 LTPWLDWAFERLK 375 (378)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998765543
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.6e-12 Score=140.99 Aligned_cols=316 Identities=11% Similarity=-0.025 Sum_probs=184.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
+...++...+.+.+++++|.++.. ...++|+|||+++..++.+.- .+ ++-+++
T Consensus 33 ~~~~~~~~~~~~~l~~l~~~~~~~--------~~i~~~~~gt~~l~~~~~~l~----------~~--------~~~vlv- 85 (368)
T PRK13479 33 DDFNALTASVRAKLVAIATGEEGY--------TCVPLQGSGTFSVEAAIGSLV----------PR--------DGKVLV- 85 (368)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCc--------eEEEEcCCcHHHHHHHHHhcc----------CC--------CCeEEE-
Confidence 444456678999999999986421 236789999999977766421 01 122333
Q ss_pred cCCCchHH--HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 307 SDQAHSSV--EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 307 S~~aHySv--~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
....+|.. .+++...+.+++.|+.+.++.+|+++++++++... .+.+|..+...|.+|.+.|+++|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~~~tG~~~~~~~i~~------ 155 (368)
T PRK13479 86 PDNGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADP----RITHVALVHCETTTGILNPLDEIAA------ 155 (368)
T ss_pred EeCCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCC----CCcEEEEEcccCccccccCHHHHHH------
Confidence 34455543 35554434588899998788999999999987542 1446778888899999999999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccccc
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV 464 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p 464 (943)
+|+++|+ ++++|++++-. .. + .+
T Consensus 156 --------------l~~~~~~-------~livDa~~~~g-~~--~---------------------------------~~ 178 (368)
T PRK13479 156 --------------VAKRHGK-------RLIVDAMSSFG-AI--P---------------------------------ID 178 (368)
T ss_pred --------------HHHHcCC-------EEEEEcccccC-Cc--c---------------------------------cc
Confidence 9999999 99999775332 11 0 00
Q ss_pred chhhhhcCCCCeeEEEEcCCCccC-ccCcch------hhhhcc-cCccc-cccCCCCcccccCccccCCCCCcchHHHHH
Q psy11047 465 PASLRIQGLGRAQNFTIVPSSLLR-VKNSGA------LHRTFN-VEPLY-LRHENSGLAIDYMHWQIPLSKRFRALKLWF 535 (943)
Q Consensus 465 ~~r~~l~Gie~ADSItiDpHK~L~-vr~~~~------L~~af~-~~p~Y-L~~~~~g~~~d~~~~tie~SRrfrALklW~ 535 (943)
+.. ..+|.+..+.|||++ ...-+. +...+. ....| +... ...++. .. .+.++|.
T Consensus 179 -----~~~-~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~-~~~~~~t------ 241 (368)
T PRK13479 179 -----IAE-LGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLY---DQWAYM-EK-TGQWRFT------ 241 (368)
T ss_pred -----ccc-cCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHH---HHHhhh-cc-cCCCCCC------
Confidence 111 147999999999986 111111 111111 00111 1000 000000 00 1122221
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHh
Q psy11047 536 VIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 615 (943)
Q Consensus 536 tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~ 615 (943)
....+..++.+.++.+.+. .+++.+.+ +..++++++.+.|.
T Consensus 242 -~~~~~~~~l~~al~~l~~~--------------~~~~~~~~------------------------~~~~~~~~l~~~L~ 282 (368)
T PRK13479 242 -PPTHVVAAFYQALLELEEE--------------GGVPARGA------------------------RYANNQRTLVAGMR 282 (368)
T ss_pred -CcHHHHHHHHHHHHHHHHh--------------hCHHHHHH------------------------HHHHHHHHHHHHHH
Confidence 1112222333333332110 00111000 03566777888887
Q ss_pred CCCCeEEecCC--Cc-cEEEEEecCCC-hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 616 GDPRFEIPAAR--HL-GMVVIRLLGEN-ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 616 ~~p~~eIl~~~--~l-~iV~Fr~~g~n-~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
+. +++++.++ .. .+++|.+.... ....++.++|.++|.+ +.+........+|++...+++.+|++++++.|+++
T Consensus 283 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~-v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~ 360 (368)
T PRK13479 283 AL-GFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFV-IYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEA 360 (368)
T ss_pred Hc-CCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEE-EecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 76 77776543 22 35778765432 2246888999888864 43322222457999776788999999999999887
Q ss_pred HHH
Q psy11047 692 ATE 694 (943)
Q Consensus 692 ~~~ 694 (943)
..+
T Consensus 361 l~~ 363 (368)
T PRK13479 361 LYW 363 (368)
T ss_pred HHH
Confidence 553
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-11 Score=135.88 Aligned_cols=297 Identities=11% Similarity=0.020 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
.++.+.+|+++|.+ ..++++||++||..++.+. + .+| -.|++++.+|.|
T Consensus 86 ~~le~~ia~~~g~~------------~~ii~~~~~~a~~~~~~~l----~------~~g---------d~vi~~~~~~~s 134 (393)
T TIGR01822 86 KELEAKIAAFLGTE------------DTILYASCFDANGGLFETL----L------GAE---------DAIISDALNHAS 134 (393)
T ss_pred HHHHHHHHHHhCCC------------cEEEECchHHHHHHHHHHh----C------CCC---------CEEEEeccccHH
Confidence 33446778888874 3677899999988554321 1 122 247778999999
Q ss_pred HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 393 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~ 393 (943)
+..++.+.....+.++ .+|+++|++.|++....+..+.+|+...-.+.+|.+.|+++|.+
T Consensus 135 ~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~--------------- 194 (393)
T TIGR01822 135 IIDGVRLCKAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICD--------------- 194 (393)
T ss_pred HHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHH---------------
Confidence 9887754322333332 38899999999875333334667776666678899999999999
Q ss_pred CchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC
Q psy11047 394 TNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL 473 (943)
Q Consensus 394 RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi 473 (943)
+|++||+ |+++|++|+.. .+ .. .|.-..+ ..++
T Consensus 195 -----la~~~~~-------~li~De~~~~g-~~--~~---------------------------~~~~~~~-----~~~~ 227 (393)
T TIGR01822 195 -----LADKYDA-------LVMVDECHATG-FL--GP---------------------------TGRGSHE-----LCGV 227 (393)
T ss_pred -----HHHHcCC-------EEEEECCcccc-Cc--CC---------------------------CCCchHH-----hcCC
Confidence 9999999 99999998543 11 00 0000000 1122
Q ss_pred -CCeeEEEEcCCCccC-ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH-HHHHHHHH
Q psy11047 474 -GRAQNFTIVPSSLLR-VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI-KGLQKHIR 550 (943)
Q Consensus 474 -e~ADSItiDpHK~L~-vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~-~Gl~~~I~ 550 (943)
..+|.++.++||+++ .+-. .+. ....++..-.. -...+...++.... .+++.+.++-. +...+..+
T Consensus 228 ~~~~di~~~s~sK~l~g~r~G-~~~----~~~~~~~~l~~----~~~~~~~~~~~~~~--~~~a~~~al~~~~~~~~~~~ 296 (393)
T TIGR01822 228 MGRVDIITGTLGKALGGASGG-FTT----ARKEVVELLRQ----RSRPYLFSNSLPPA--VVGASIKVLEMLEASNELRD 296 (393)
T ss_pred CCCCeEEEEEChHHhhCCCcE-EEE----eCHHHHHHHHH----hCccceecCCCCHH--HHHHHHHHHHHHhcCHHHHH
Confidence 257999999999976 2211 110 00001000000 00001112222111 11111111100 11111111
Q ss_pred HHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccE
Q psy11047 551 EIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGM 630 (943)
Q Consensus 551 ~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~i 630 (943)
+ ..++++++.+.|.+. ++++. ++..++
T Consensus 297 ~---------------------------------------------------~~~~~~~l~~~L~~~-g~~~~-~~~~~~ 323 (393)
T TIGR01822 297 R---------------------------------------------------LWANTRYFRERMEAA-GFDIK-PADHPI 323 (393)
T ss_pred H---------------------------------------------------HHHHHHHHHHHHHHc-CCCCC-CCCCCE
Confidence 1 234566777777664 67664 334557
Q ss_pred EEEEecCCChHHHHHHHHHhccCcEEEeeccc----CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 631 VVIRLLGENILTEKLLKRLNSKGRLHCVPASL----RIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 631 V~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~----~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+.+.+.+. ....++.+.|.++|. +++.... .+...+|++++..+|++||+++++.|+++..+
T Consensus 324 ~~i~~~~~-~~~~~l~~~L~~~gI-~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 324 IPVMLYDA-VLAQRFARRLLEEGI-YVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred EEEEeCCH-HHHHHHHHHHHHCCe-eEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 77765431 235678888888874 4443211 24457999999999999999999999887554
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-11 Score=134.89 Aligned_cols=298 Identities=8% Similarity=-0.071 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 232 LEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 232 LE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
+...+.+++++++|.++ .+++++||++|+.++.+.. .+| -.|++++..|
T Consensus 47 ~~~~l~~~la~~~~~~~------------~iv~~sg~~a~~~~~~~~~----------~~g---------d~Vl~~~~~~ 95 (349)
T cd06454 47 LHEELEEELAEFHGKEA------------ALVFSSGYAANDGVLSTLA----------GKG---------DLIISDSLNH 95 (349)
T ss_pred HHHHHHHHHHHHhCCCC------------EEEeccHHHHHHHHHHHhc----------CCC---------CEEEEehhhh
Confidence 33455567888888742 4778888999987765321 122 2467788899
Q ss_pred hHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 312 SSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 312 ySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
.++..++..-+..+..++. +|.+.+++.|++..+ ...+.+|+.+...+.+|.+.|+++|.+
T Consensus 96 ~~~~~~~~~~g~~~~~~~~-----~~~~~le~~i~~~~~-~~~~~~v~~~~~~~~tG~~~~~~~i~~------------- 156 (349)
T cd06454 96 ASIIDGIRLSGAKKRIFKH-----NDMEDLEKLLREARR-PYGKKLIVTEGVYSMDGDIAPLPELVD------------- 156 (349)
T ss_pred HHHHHHHHHcCCceEEecC-----CCHHHHHHHHHHhhc-cCCCeEEEEeccccCCCCccCHHHHHH-------------
Confidence 9988877543335666652 578899998876431 123677777777888999999999999
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhc
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQ 471 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~ 471 (943)
+|+++|+ ++++|++++.. .+. +. +. ...... .
T Consensus 157 -------~~~~~~~-------~livD~a~~~g-~~~-~~----------------------------~~-~~~~~~---~ 188 (349)
T cd06454 157 -------LAKKYGA-------ILFVDEAHSVG-VYG-PH----------------------------GR-GVEEFG---G 188 (349)
T ss_pred -------HHHHcCC-------EEEEEcccccc-ccC-CC----------------------------CC-Chhhhc---c
Confidence 9999999 99999999643 110 00 00 000000 0
Q ss_pred CCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy11047 472 GLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIRE 551 (943)
Q Consensus 472 Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~ 551 (943)
....+|.+..++||+++.+.. .+. .+..++..-.. ....+...++-. . .+..++.+.++.
T Consensus 189 ~~~~~~i~~~s~sK~~~~~gG-~i~----~~~~~~~~~~~----~~~~~~~~~~~~--~---------~~~~a~~~~l~~ 248 (349)
T cd06454 189 LTDDVDIIMGTLGKAFGAVGG-YIA----GSKELIDYLRS----YARGFIFSTSLP--P---------AVAAAALAALEV 248 (349)
T ss_pred ccccCcEEEeechhhhcccCC-EEE----CCHHHHHHHHH----hchhhhccCCCC--H---------HHHHHHHHHHHH
Confidence 123579999999999985221 110 01111100000 000011111111 1 111111222222
Q ss_pred HHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEE
Q psy11047 552 IFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMV 631 (943)
Q Consensus 552 ~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV 631 (943)
+.+ ...+++ +..++++++.+.|.+. +++++.++...+.
T Consensus 249 ~~~-----------------~~~~~~------------------------~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~ 286 (349)
T cd06454 249 LQG-----------------GPERRE------------------------RLQENVRYLRRGLKEL-GFPVGGSPSHIIP 286 (349)
T ss_pred Hhc-----------------CHHHHH------------------------HHHHHHHHHHHHHHhc-CCcccCCCCCcEE
Confidence 100 000000 0345677787777765 6777665554445
Q ss_pred EEEecCCChHHHHHHHHHhccCcEEEeeccc----CCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 632 VIRLLGENILTEKLLKRLNSKGRLHCVPASL----RIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 632 ~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~----~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
++.... .....++.+.|.++|. ++.+... .+..++|+.++.+++++||+++++.|+++
T Consensus 287 ~~~~~~-~~~~~~~~~~L~~~gI-~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 287 PLIGDD-PAKAVAFSDALLERGI-YVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred EEeCCC-hHHHHHHHHHHHhCCc-eEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 555431 2335788888888875 4443211 22468999889999999999999999875
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.6e-12 Score=142.63 Aligned_cols=332 Identities=10% Similarity=-0.037 Sum_probs=204.6
Q ss_pred cCCCC-hHHHHHHHHHHHH---hccCccccC---ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHH
Q psy11047 199 PALNS-YPSLLGDMLSDAI---NCLGFTWAS---SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASEST 271 (943)
Q Consensus 199 ~~~~s-~~silgd~L~~al---N~n~~~~~~---SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeAN 271 (943)
|++.. ++.++..+..... |...+.+.. ++...++-..+.+.|+++||.|+. ...+|++|++.+-
T Consensus 9 pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~---------~~v~~~~gsgt~~ 79 (360)
T PRK05355 9 AGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDN---------YKVLFLQGGASLQ 79 (360)
T ss_pred CCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC---------cEEEEEcCCchHH
Confidence 44444 3455544444332 222333333 444457888999999999998654 2567777777776
Q ss_pred HHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHH-HHHHhh
Q psy11047 272 LICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIE-AIERDK 349 (943)
Q Consensus 272 L~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~-aI~~d~ 349 (943)
+.|...-. + .+| ..-+++..+..+|.+.+-|-..|. . ..++++. .|..+..++++ .|+++
T Consensus 80 ~Ea~~~nl---~------~~g------~~~l~i~~G~fg~r~~~~a~~~g~-~-~~~~~~~~~g~~~~~~~~~~~l~~~- 141 (360)
T PRK05355 80 FAMVPMNL---L------GGG------KKADYVDTGSWSKKAIKEAKKYGE-V-NVAASSEDDGFTYIPPLDEWQLSDD- 141 (360)
T ss_pred HHHHHHhc---C------CCC------CeEEEEECCHHHHHHHHHHHHhCC-c-eEEecccccCCCCCCChhhccCCCC-
Confidence 66655321 1 112 123567778888888666667785 3 5555543 67777666666 56443
Q ss_pred ccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccc
Q psy11047 350 KKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIP 429 (943)
Q Consensus 350 ~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp 429 (943)
+.+|..|+..|.+|...| .|.+ + +|. .+.|||+.+.+ ...
T Consensus 142 -----~~~V~~th~eTstGv~~~--~i~~--------------------i---~g~-------l~vVDavss~g-~~~-- 181 (360)
T PRK05355 142 -----AAYVHYTSNETIDGTEFH--ELPD--------------------T---GDV-------PLVADMSSDIL-SRP-- 181 (360)
T ss_pred -----CCEEEEccCCCcceEecC--cccc--------------------c---CCC-------cEEEEcCcccc-Ccc--
Confidence 678999999999999974 3555 5 788 89999998766 321
Q ss_pred cccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchh---hhhcc-cCccc
Q psy11047 430 AARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL---HRTFN-VEPLY 505 (943)
Q Consensus 430 ~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L---~~af~-~~p~Y 505 (943)
++ + ...|.+.++.||+++...-+.+ .+++. ..+.
T Consensus 182 ---------------------------------id-----v---~~~d~~~~ssqK~lgP~Glg~l~~s~~~l~~~~~~- 219 (360)
T PRK05355 182 ---------------------------------ID-----V---SKFGLIYAGAQKNIGPAGLTIVIVREDLLGRALPS- 219 (360)
T ss_pred ---------------------------------CC-----H---HHccEEEEeccccccCCceEEEEECHHHHhhcccC-
Confidence 11 1 1237999999999882111111 00000 1110
Q ss_pred cccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc-chhhhhcccccccc
Q psy11047 506 LRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCL-GTAMIVKGLGFYKM 584 (943)
Q Consensus 506 L~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~-g~~~i~~~~~~~~i 584 (943)
+ +...++..+.... ..+.|....+..|+.+.++.+.+ . |++.+.++
T Consensus 220 ~-----~~~~~~~~~~~~~-------~~~~Tp~~~~i~aL~~aL~~i~~---------------~gG~e~i~~r------ 266 (360)
T PRK05355 220 I-----PSMLDYKTHADND-------SMYNTPPTFAIYLAGLVFKWLKE---------------QGGVAAMEKR------ 266 (360)
T ss_pred C-----ChHHHHHHHHhcC-------CccCCCcHHHHHHHHHHHHHHHH---------------ccCHHHHHHH------
Confidence 0 0001111100000 01246677788888888888643 3 45544433
Q ss_pred cccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC--CCc-cEEEEEecCCChHHHHHHHHHhccCcEEEeecc
Q psy11047 585 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA--RHL-GMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 661 (943)
Q Consensus 585 ~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~--~~l-~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~ 661 (943)
+.++++++.+.|.+.+.+..+.+ ... .+++|++++. .+...+++.+.++|.. | +..
T Consensus 267 ------------------~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~-~~~~~~~~~~~~~Gi~-~-~~~ 325 (360)
T PRK05355 267 ------------------NQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE-ELDKKFLAEAKAAGLV-G-LKG 325 (360)
T ss_pred ------------------HHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh-HHHHHHHHHHHHCCCc-c-cCC
Confidence 67899999999999884444332 234 5699998764 3346677788888864 5 332
Q ss_pred cCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 662 LRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 662 ~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
.+..+.+|+++..++|.+||+++++.|+++.+
T Consensus 326 ~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~ 357 (360)
T PRK05355 326 HRSVGGMRASIYNAMPLEGVQALVDFMKEFER 357 (360)
T ss_pred CCccCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 33347899999999999999999999998654
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.8e-11 Score=133.64 Aligned_cols=300 Identities=12% Similarity=0.017 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCc-------hhhhcCCc
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPEL-------EHAEINSR 301 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl-------~~~~i~~~ 301 (943)
..++-.++.+++++++|.+ ..++|+|||+|+..++.+.-. +|- -......+
T Consensus 43 ~~~~~~~~~~~~a~~~g~~------------~~~~~~g~t~al~~al~al~~----------~Gd~~~~~~~~~s~~~~~ 100 (363)
T TIGR01437 43 IKELVNKTGEYIANLLGVE------------DAVIVSSASAGIAQSVAAVIT----------RGNRYLVENLHDSKIEVN 100 (363)
T ss_pred HHHHHHHHHHHHHHhhCCC------------eEEEEcCHHHHHHHHHHHHhc----------CCCcchhhcccccccccc
Confidence 3466677888999999974 368999999999988876421 120 00000112
Q ss_pred eEEEecCCCchHHH-----HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEE-EecCCCcccccccHHH
Q psy11047 302 LVAYCSDQAHSSVE-----KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIF-SGLALPAFLVVDSYCC 375 (943)
Q Consensus 302 ~vV~~S~~aHySv~-----KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VV-aTaGTT~tGaIDpL~e 375 (943)
- |+++. .||... .++.+.+..++.++. ++.+|+++++++|.++ +.+++ .+...+.+|.+-|+++
T Consensus 101 e-Vi~~~-~~~~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~~~------t~ai~~v~~~~~~~g~~~~~~~ 170 (363)
T TIGR01437 101 E-VVLPK-GHNVDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAITEK------TAAILYIKSHHCVQKSMLSVED 170 (363)
T ss_pred e-EEEEC-ccchhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcChh------ceEEEEEecCCCCcCCcCCHHH
Confidence 2 44544 777643 233455556777765 4679999999999865 33344 3444557788989999
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHh
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRL 455 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l 455 (943)
|++ +|++||+ ++|+|+|++.. +
T Consensus 171 i~~--------------------~a~~~gi-------~vivD~a~~~~--~----------------------------- 192 (363)
T TIGR01437 171 AAQ--------------------VAQEHNL-------PLIVDAAAEED--L----------------------------- 192 (363)
T ss_pred HHH--------------------HHHHcCC-------eEEEECCCCCc--h-----------------------------
Confidence 999 9999999 99999999722 1
Q ss_pred hccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHH
Q psy11047 456 NSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWF 535 (943)
Q Consensus 456 ~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~ 535 (943)
..... . .+|.+++++|||++-...+.+. ..+..+..- .. ......|.++...
T Consensus 193 --------~~~~~----~-g~D~~~~S~~K~l~gp~~G~l~----~~~~~i~~~------~~--~~~~~~~~~~~~~--- 244 (363)
T TIGR01437 193 --------QKYYR----L-GADLVIYSGAKAIEGPTSGLVL----GKKKYIEWV------KL--QSKGIGRAMKVGK--- 244 (363)
T ss_pred --------HHHHH----c-CCCEEEEeCCcccCCCceEEEE----EcHHHHHHH------Hh--ccCCCcceeccCH---
Confidence 00000 1 4799999999988622222221 011111100 00 0001123333211
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHh
Q psy11047 536 VIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 615 (943)
Q Consensus 536 tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~ 615 (943)
.+..|+.+.++.+.+ .+.+.+.+ ..+.++++.+.|.
T Consensus 245 ----~~~~gl~aAl~~~~~---------------~~~~~~~~-------------------------~~~~~~~l~~~L~ 280 (363)
T TIGR01437 245 ----ENILGLTAALEQYLS---------------TGKESGAE-------------------------MVAKLTPFIEALN 280 (363)
T ss_pred ----HHHHHHHHHHHHHHc---------------cCcccHHH-------------------------HHHHHHHHHHHHh
Confidence 234566666665321 01111111 2345667999999
Q ss_pred CCCCeEEecCC-------CccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHH
Q psy11047 616 GDPRFEIPAAR-------HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEI 688 (943)
Q Consensus 616 ~~p~~eIl~~~-------~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I 688 (943)
++|++++..++ ....|.|...+.+.-..++.++|.+.|.-..+.......+.+|+.... ++++|++.++++|
T Consensus 281 ~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~-~~~~e~~~~~~~l 359 (363)
T TIGR01437 281 TLKGVSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRS-VTGGQLDIIVERI 359 (363)
T ss_pred cCCCeEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeec-CCHHHHHHHHHHH
Confidence 99999987432 124466665322223578889998766423332223345678874443 5699999999999
Q ss_pred HHH
Q psy11047 689 RNT 691 (943)
Q Consensus 689 ~~~ 691 (943)
+++
T Consensus 360 ~~~ 362 (363)
T TIGR01437 360 REI 362 (363)
T ss_pred HHh
Confidence 875
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.4e-11 Score=132.47 Aligned_cols=174 Identities=11% Similarity=-0.017 Sum_probs=108.9
Q ss_pred CCCCCCCceeEEccCCCChHHHHHHHHHHHHhc--cC-ccccCCh---hHHHHHHHHHHHHHHHhCCCccccccCcCCCC
Q psy11047 186 ITHWQSPYMHAYFPALNSYPSLLGDMLSDAINC--LG-FTWASSP---ACTELEIITMNWLGKMIGLPEEFLHTKVDSPG 259 (943)
Q Consensus 186 ~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~--n~-~~~~~SP---aateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~ 259 (943)
...|.+=.|+|+-..+...++++ +.+.....+ +. .....+. .++.+-.+..+.+|+++|.+.
T Consensus 6 ~~~~~s~~YL~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~----------- 73 (370)
T PRK05937 6 SIDFVTNDFLGFSRSDTLVHEVE-KRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE----------- 73 (370)
T ss_pred eEEeECCCccCCCCCHHHHHHHH-HHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe-----------
Confidence 34577777887765544333333 333222211 11 2222222 144555567788899999863
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHH
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGD 339 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~d 339 (943)
.++.++|+.+|+ ++..+ +. . +.-.|+.+...|.|+..++.+........ +..|++
T Consensus 74 -~l~~~sG~~a~~-~~~~~----~~-----~---------~~d~ii~d~~~H~sv~~~~~~~~~~~~~~-----~~~d~~ 128 (370)
T PRK05937 74 -AFIVPSGYMANL-GLCAH----LS-----S---------VTDYVLWDEQVHISVVYSLSVISGWHQSF-----RHNDLD 128 (370)
T ss_pred -EEEECChHHHHH-HHHHH----hC-----C---------CCCEEEEEhhhhHHHHHHHHHcCCceEEe-----cCCCHH
Confidence 245555667775 33221 10 0 12357778999999999885422222223 346899
Q ss_pred HHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhh
Q psy11047 340 KLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL 419 (943)
Q Consensus 340 aLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA 419 (943)
+|++.|+.....+..+.+|+.+...+.+|.+-|+++|.+ +|+++|+ ++|||+|
T Consensus 129 ~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~--------------------l~~~~~~-------~livDea 181 (370)
T PRK05937 129 HLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIA--------------------LSKKYHA-------HLIVDEA 181 (370)
T ss_pred HHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHH--------------------HHHHcCC-------EEEEECC
Confidence 999999865332223456667778888999999999999 9999999 9999999
Q ss_pred hcCC
Q psy11047 420 VLGD 423 (943)
Q Consensus 420 ~GG~ 423 (943)
++.+
T Consensus 182 ~~~G 185 (370)
T PRK05937 182 HAMG 185 (370)
T ss_pred cccc
Confidence 9854
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-11 Score=135.28 Aligned_cols=306 Identities=11% Similarity=-0.020 Sum_probs=191.0
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCC-hHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTT-ASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsG-GTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
+|...++-..+++.|+++||.|.+ ...+|++| ||+|+-.++..- +. +| ..-+++
T Consensus 32 ~~~f~~~~~~~~~~l~~l~~~~~~---------~~v~~~~gsgT~a~ea~~~nl----~~------~~------~~~l~i 86 (349)
T TIGR01364 32 SKEFEAVANEAESDLRELLNIPDN---------YEVLFLQGGATGQFAAVPLNL----LA------EG------KVADYI 86 (349)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCC---------ceEEEEcCCchHHHHHHHHhc----CC------CC------CeEEEE
Confidence 344457777899999999998654 35677766 999986665431 10 11 123566
Q ss_pred EecCCCchHHHHHHHHCCccEEEEecCCCC----CcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAGLIGLVNMRYIESDDKL----SLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa~LG~~~v~~Vp~D~~g----rmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
..+..+|...+-|-.+|. +..+..++.+ ..++++++ ++. .+.+|..|+..|.+|...| +
T Consensus 87 ~~G~fg~r~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~v~~th~ETstGv~~~-----~-- 149 (349)
T TIGR01364 87 VTGAWSKKAAKEAKKYGV--VNVVASGKEGNYTKIPDPSTWE--ISE------DAAYVHYCANETIHGVEFR-----E-- 149 (349)
T ss_pred ECCHHHHHHHHHHHHhCC--cEEEeccccCCCCCCCCHHhcC--CCC------CCCEEEEcCCCCcccEecc-----e--
Confidence 677778877666667787 5555554333 33444433 111 2678999999999999875 4
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCc
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGR 460 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~ 460 (943)
+++.++. .+.|||+.+.+ ..+
T Consensus 150 ------------------l~~~~~~-------l~iVDavss~g-~~~--------------------------------- 170 (349)
T TIGR01364 150 ------------------LPDVKNA-------PLVADMSSNIL-SRP--------------------------------- 170 (349)
T ss_pred ------------------ecccCCC-------eEEEEcccccc-Ccc---------------------------------
Confidence 5557888 89999998765 321
Q ss_pred ccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHH
Q psy11047 461 LHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNF 540 (943)
Q Consensus 461 ~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~ 540 (943)
+ .. +..|.+.+++||+++...-+.+ ..++..+..-... ...+.+|.... +.. ..+.|....
T Consensus 171 --i-d~-------~~~d~~~~ssqK~lgP~Glg~l----~~s~~~~~~~~~~-~~~~~~~~~~~-~~~---~~~~Tp~~~ 231 (349)
T TIGR01364 171 --I-DV-------SKFGLIYAGAQKNIGPAGLTVV----IVRKDLLGRASRI-TPSMLNYKIHA-END---SMYNTPPTF 231 (349)
T ss_pred --C-CH-------HHccEEEEecccccCCCceEEE----EECHHHHhhcccC-CCCcchHHHHH-hcC---CCCCCCcHH
Confidence 1 11 1247999999999882111111 0011111000000 00111111000 000 112366777
Q ss_pred HHHHHHHHHHHHHhcCCCcccccccccccc-chhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCC
Q psy11047 541 GIKGLQKHIREIFSGLALPAFLVVDSYCCL-GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPR 619 (943)
Q Consensus 541 G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~-g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~ 619 (943)
++.++.+.++.+.+ . |++.+.++ +.++++++.+.|.+.++
T Consensus 232 ~i~al~~al~~l~~---------------~gG~e~i~~r------------------------~~~l~~~l~~~l~~~~g 272 (349)
T TIGR01364 232 AIYVSGLVFKWLKE---------------QGGVKAIEKR------------------------NQAKAQLLYDTIDNSNG 272 (349)
T ss_pred HHHHHHHHHHHHHH---------------cCCHHHHHHH------------------------HHHHHHHHHHHHHhCCC
Confidence 88888888888643 3 45555443 67899999999999998
Q ss_pred eEEecC-C--Cc-cEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 620 FEIPAA-R--HL-GMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 620 ~eIl~~-~--~l-~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
+..... + .. .+++|++++. .+..++++.+.++|. |.+......+++|+++..++|.+||++++++|+++.+
T Consensus 273 l~~~~~~~~~rs~~v~sf~~~~~-~~~~~~~~~~~~~Gi--~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 273 FYRNPVDPRNRSRMNVVFTLGNE-ELEKRFLKEAEERGL--VSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred eeccCCCHHHcCCeEEEEecCCh-hHhHHHHHHHHHCCC--cccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 766632 1 34 5689998764 344677778888897 4333222246899999999999999999999998654
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-10 Score=132.92 Aligned_cols=326 Identities=11% Similarity=0.050 Sum_probs=188.8
Q ss_pred hHHHHHHHHHHHHhccCcccc------CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWA------SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLA 277 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~------~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~a 277 (943)
.|.+...+....++..+..+. ..|...++|..+.+.+++++|.+. .-+++++||.||+.++.+
T Consensus 41 ~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~-----------alv~~~SG~~A~~~~l~a 109 (416)
T PRK13034 41 SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDY-----------ANVQPHSGSQANGAVYLA 109 (416)
T ss_pred CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCc-----------eEEecCCcHHHHHHHHHH
Confidence 455565555554455443222 247789999988999999999753 235678999999887764
Q ss_pred HHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH-HHHHHH--CCccE--EEEecC-CCCCcCHHHHHHHHHHhhcc
Q psy11047 278 GRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV-EKAGLI--GLVNM--RYIESD-DKLSLRGDKLIEAIERDKKK 351 (943)
Q Consensus 278 AR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv-~KAa~L--G~~~v--~~Vp~D-~~grmD~daLe~aI~~d~~k 351 (943)
- + .|| -.|+++...|.+. ..++.+ +...+ .....+ ..+.+|+++|++.+...
T Consensus 110 l----~------~~G---------D~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--- 167 (416)
T PRK13034 110 L----L------KPG---------DTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEH--- 167 (416)
T ss_pred h----c------CCC---------CEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhc---
Confidence 2 1 122 3578888899873 333322 11122 233333 25679999999988652
Q ss_pred CCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccc
Q psy11047 352 HLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA 431 (943)
Q Consensus 352 G~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~ 431 (943)
.|.+|+.+ .+.+|..-|+.+|.+ +|++||+ ++++|+|++.+ .+
T Consensus 168 --~~klVi~~--~~~~g~~~dl~~l~~--------------------la~~~g~-------~livD~Aha~G-~~----- 210 (416)
T PRK13034 168 --KPKLIIAG--FSAYPRELDFARFRE--------------------IADEVGA-------LLMVDMAHIAG-LV----- 210 (416)
T ss_pred --CCeEEEEC--CCccccccCHHHHHH--------------------HHHHcCC-------EEEEeCccccc-Cc-----
Confidence 15555533 344677778999999 9999999 99999998766 22
Q ss_pred cccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCcc--ccccC
Q psy11047 432 RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPL--YLRHE 509 (943)
Q Consensus 432 ~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~--YL~~~ 509 (943)
..... ...+..+|.++.++|||+....+..+. ..++. +....
T Consensus 211 ------------------------------~~g~~---~~~~~~~Di~~~s~~K~l~g~~GG~v~---~~~~~~~~~~~~ 254 (416)
T PRK13034 211 ------------------------------AAGEH---PNPFPHAHVVTTTTHKTLRGPRGGMIL---TNDEEIAKKINS 254 (416)
T ss_pred ------------------------------ccCCC---CCCCCCceEEEEeCcccCCCCCCeEEE---ECcHHHHHHHHh
Confidence 00000 112246899999999999633332221 00000 00000
Q ss_pred CCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCC
Q psy11047 510 NSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTN 589 (943)
Q Consensus 510 ~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~ 589 (943)
....++..+..+. .+ ..+..++.+.++.- ....++
T Consensus 255 -------~~~~~~~~~~~~~------~~-aa~~~al~~~~~~~-------------------~~~~~~------------ 289 (416)
T PRK13034 255 -------AVFPGLQGGPLMH------VI-AAKAVAFGEALQPE-------------------FKTYAK------------ 289 (416)
T ss_pred -------hcCCcccCCccHH------HH-HHHHHHHHHHhChh-------------------HHHHHH------------
Confidence 0000111111111 11 11111222222110 000000
Q ss_pred CcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc----C-
Q psy11047 590 FPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL----R- 663 (943)
Q Consensus 590 ~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~----~- 663 (943)
+..+++++|++.|.+. +++++.+ .+.+++.+.+...+.....+.++|.+.|. ++..... +
T Consensus 290 ------------~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI-~v~~~~~p~~~~~ 355 (416)
T PRK13034 290 ------------QVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGI-TVNKNTVPGDTES 355 (416)
T ss_pred ------------HHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCc-EEeccCCCCCCcC
Confidence 0367888999988877 8888753 56777777665433234566678888885 4442111 1
Q ss_pred --CCcEEEEeecC----CCCHHHHHHHHHHHHHHHHH
Q psy11047 664 --IQGLGRAQNFT----RTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 664 --g~~~lR~v~~~----~tt~edId~ll~~I~~~~~~ 694 (943)
....+|++++. ..+++||+++++.|.++..+
T Consensus 356 p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 356 PFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred CCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 14579987666 66799999999999988664
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-11 Score=135.89 Aligned_cols=309 Identities=12% Similarity=-0.012 Sum_probs=180.2
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEc-CChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQ-TTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfT-sGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
.-++...++-.++.+.+++++|.+++ ...+|+ +|||.++..+++.- +. + ..+
T Consensus 34 hr~~~f~~~~~~~r~~l~~l~~~~~~---------~~v~f~~gs~T~a~~~~~~~l----~~------~--------~~l 86 (361)
T TIGR01366 34 HRQAPVKNLVGRVREGLAELFSLPDG---------YEVILGNGGATAFWDAATFGL----IE------K--------KSL 86 (361)
T ss_pred cCChHHHHHHHHHHHHHHHHhCCCCC---------ceEEEECCchhHHHHHHHHhc----cc------c--------ccc
Confidence 45666777888899999999999654 356776 55999987776531 10 0 112
Q ss_pred EEEecCCCchH-HHHHH-H--HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSS-VEKAG-L--IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHyS-v~KAa-~--LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
+ ++...|.+ +.+.+ . ++. ++..++++....++.+ +. ..+.+|+.|+.+|.+|.+.|+++|+
T Consensus 87 ~--i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~-----~~------~~~~lV~~~h~et~tG~~~pi~~I~- 151 (361)
T TIGR01366 87 H--LSFGEFSSKFAKAVKLAPWLG-EPIIVTADPGSAPEPQ-----AD------PGVDVIAWAHNETSTGVAVPVRRPE- 151 (361)
T ss_pred E--EecCHHHHHHHHHHHhhhccC-CceEEecCCCCCCCCc-----cC------CCCCEEEEcccCCccceeccccccc-
Confidence 2 33334433 23333 2 122 5677776544333331 21 2377999999999999999987664
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhcc
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK 458 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~ 458 (943)
+++|+ .+.|||+.... ..
T Consensus 152 ----------------------~~~g~-------~~iVDavqs~g-~~-------------------------------- 169 (361)
T TIGR01366 152 ----------------------GSDDA-------LVVIDATSGAG-GL-------------------------------- 169 (361)
T ss_pred ----------------------ccCCC-------eEEEEcCcccc-CC--------------------------------
Confidence 37899 99999998765 22
Q ss_pred CcccccchhhhhcCCCCeeEEEEcCCCccCccCcchh----hhhcccCccccccCCCCcccccCccc--cCCCCCcchHH
Q psy11047 459 GRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL----HRTFNVEPLYLRHENSGLAIDYMHWQ--IPLSKRFRALK 532 (943)
Q Consensus 459 G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L----~~af~~~p~YL~~~~~g~~~d~~~~t--ie~SRrfrALk 532 (943)
.++ + +.+|.+.+++|||++....-.+ .+.+..-.++.. .+.+. ..+.++. .+. .+++ .
T Consensus 170 ---~id-----v---~~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~-~~~~~-p~~~d~~~~~~~--~~~~-~ 233 (361)
T TIGR01366 170 ---PVD-----I---AETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAA-SGRWV-PEFLSLPTAVDN--SLKN-Q 233 (361)
T ss_pred ---CCC-----H---HHCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccC-CCCCC-chhhhHHHHHhc--cccC-C
Confidence 111 1 1269999999999993311111 001100000110 00000 0011100 000 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHH
Q psy11047 533 LWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEA 612 (943)
Q Consensus 533 lW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~ 612 (943)
.+.+....+..|+.+.++.+.+. .|++.+.++ +.++++++.+
T Consensus 234 t~~tp~i~~i~~l~~al~~l~~~--------------gg~e~~~~r------------------------~~~l~~~l~~ 275 (361)
T TIGR01366 234 TYNTPAIATLALLAEQIDWMNGN--------------GGLDWAVAR------------------------TADSSSRLYS 275 (361)
T ss_pred CCCCchHHHHHHHHHHHHHHHHc--------------cCHHHHHHH------------------------HHHHHHHHHH
Confidence 11244555566788888875430 134433222 5788999999
Q ss_pred HHhCCCCeEEecC-C-----CccEEEEEecCCChHHHHHHHHHhccCcEEEeec-ccCCCcEEEEeecCCCCHHHHHHHH
Q psy11047 613 LVLGDPRFEIPAA-R-----HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA-SLRIQGLGRAQNFTRTTNDDITRDW 685 (943)
Q Consensus 613 ~L~~~p~~eIl~~-~-----~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t-~~~g~~~lR~v~~~~tt~edId~ll 685 (943)
.+.+.+.++++.+ + ...+|+| ..+.+ ...+.+.|.++|.....+. .+ +..++|++++.++|.+||++++
T Consensus 276 ~l~~~~~~~~~~~~~~~~s~~v~~v~~-~~g~~--~~~v~~~L~~~gI~i~~~~~~l-~~~~vRis~~~~~t~~di~~l~ 351 (361)
T TIGR01366 276 WAQERPYATPFVTDPGKRSQVVGTIDF-VDDID--AATVAKILRANGIVDTEPYRKL-GRNQLRVAMFPAIDPDDVEALT 351 (361)
T ss_pred HHHhCCCcccCCCChhhcccceEEEEC-CCccC--HHHHHHHHHHCCCeeccCcccc-CCCcEEEEcCCCCCHHHHHHHH
Confidence 9999987776642 1 1244555 24333 5678888888876542221 12 2458999999999999999999
Q ss_pred HHHHHHHHH
Q psy11047 686 NEIRNTATE 694 (943)
Q Consensus 686 ~~I~~~~~~ 694 (943)
++|+++.++
T Consensus 352 ~al~~~~~~ 360 (361)
T TIGR01366 352 ECVDWVVER 360 (361)
T ss_pred HHHHHHHhh
Confidence 999997654
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-10 Score=129.47 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=92.0
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
.+....+|..+++++++++|.+.. -+++++||+|+..++.+. + .+| -.|+
T Consensus 66 ~~~~~~~e~~~~~~la~~~g~~~~-----------~i~~~sgt~al~~~l~~l----~------~~g---------d~Vl 115 (416)
T PRK00011 66 CEYVDVVEQLAIDRAKELFGAEYA-----------NVQPHSGSQANAAVYFAL----L------KPG---------DTIL 115 (416)
T ss_pred chHHHHHHHHHHHHHHHHhCCCce-----------eeecCCchHHHHHHHHHh----c------CCC---------CEEE
Confidence 356778888899999999998643 244456788887665432 1 122 2466
Q ss_pred ecCCCchHHHH---HHHHC--CccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 306 CSDQAHSSVEK---AGLIG--LVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 306 ~S~~aHySv~K---Aa~LG--~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
++..+|.+..- +..++ +.+++.++.+ +++.+|++++++.|+... |.+|+.+ .++.|...|+++|.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~k~v~~~--~~~~~~~~~~~~I~~- 187 (416)
T PRK00011 116 GMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHK-----PKLIIAG--ASAYSRPIDFKRFRE- 187 (416)
T ss_pred EeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcC-----CCEEEEC--CCcCCCccCHHHHHH-
Confidence 77777765321 11222 2366777776 468999999999997531 4444443 245677778999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|+|++.+
T Consensus 188 -------------------la~~~~~-------~livD~a~~~g 205 (416)
T PRK00011 188 -------------------IADEVGA-------YLMVDMAHIAG 205 (416)
T ss_pred -------------------HHHHcCC-------EEEEECcchhc
Confidence 9999999 99999997644
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.1e-10 Score=125.55 Aligned_cols=294 Identities=11% Similarity=0.002 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
.++.+.+++++|.+ ..+++++|++||..++.+++.. . +..+|++....|.|
T Consensus 93 ~~Le~~la~~~g~~------------~~l~~~sG~~an~~ai~~l~~~--------~---------~~~~v~~~~~~h~s 143 (402)
T TIGR01821 93 VELEAELADLHGKE------------SALVFTSGYVANDATLATLAKI--------I---------PGCVIFSDELNHAS 143 (402)
T ss_pred HHHHHHHHHHhCCC------------eEEEECchHHHHHHHHHHhhCC--------C---------CCCEEEEcchHhHH
Confidence 34445678888853 3578888899999888765421 0 12356666678999
Q ss_pred HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 393 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~ 393 (943)
+..++.+....+..++. .|.+++++.++.... ..+.+|+.....+.+|.+-|+++|.+
T Consensus 144 ~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~--~~~~~v~~e~~~~~~G~~~~l~~i~~--------------- 201 (402)
T TIGR01821 144 MIEGIRHSGAEKFIFRH-----NDVAHLEKLLQSVDP--NRPKIIAFESVYSMDGDIAPIEEICD--------------- 201 (402)
T ss_pred HHHHHHHcCCeEEEECC-----CCHHHHHHHHHhccC--CCCeEEEEcCCCCCCCCccCHHHHHH---------------
Confidence 88877544335544443 368888888874321 13567777778888999999999999
Q ss_pred CchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC
Q psy11047 394 TNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL 473 (943)
Q Consensus 394 RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi 473 (943)
+|++||+ |++||.|++.+ .+- + .|.-.. . ..++
T Consensus 202 -----l~~~~~~-------~livDea~~~G-~~g-~----------------------------~g~g~~-~----~~~~ 234 (402)
T TIGR01821 202 -----LADKYGA-------LTYLDEVHAVG-LYG-P----------------------------RGGGIA-E----RDGL 234 (402)
T ss_pred -----HHHHcCC-------EEEEeCccccc-ccC-C----------------------------CCCccc-h----hccC
Confidence 9999999 99999999733 110 0 000011 0 1122
Q ss_pred -CCeeEEEEcCCCccCccCc-----chhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHH
Q psy11047 474 -GRAQNFTIVPSSLLRVKNS-----GALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQK 547 (943)
Q Consensus 474 -e~ADSItiDpHK~L~vr~~-----~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~ 547 (943)
...|-+...+.|.++.-.. ..+.+ ++..... .+....+ ..++.+.+.+..+ +.+++
T Consensus 235 ~~~~div~~t~sKa~g~~GG~i~~~~~~~~-------~l~~~~~-------~~~~t~~--~~~~~~aaa~aaL--~~~~~ 296 (402)
T TIGR01821 235 MHRIDIIEGTLAKAFGVVGGYIAASRKLID-------AIRSYAP-------GFIFTTS--LPPAIAAGATASI--RHLKE 296 (402)
T ss_pred CCCCeEEEEechhhhccCCceeecCHHHHH-------HHHHhCc-------CceecCc--CCHHHHHHHHHHH--HHhhc
Confidence 3458777788998773211 01111 1110000 0000111 1111112222211 11110
Q ss_pred HHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCC
Q psy11047 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 627 (943)
Q Consensus 548 ~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~ 627 (943)
. ..+ ++. ..++++++.+.|++. +++++. +.
T Consensus 297 ~-~~~-----------------------~~~------------------------~~~~~~~l~~~L~~~-g~~~~~-~~ 326 (402)
T TIGR01821 297 S-QDL-----------------------RRA------------------------HQENVKRLKNLLEAL-GIPVIP-NP 326 (402)
T ss_pred C-HHH-----------------------HHH------------------------HHHHHHHHHHHHHHc-CCCcCC-CC
Confidence 0 000 000 235667777777765 566553 46
Q ss_pred ccEEEEEecCCChHHHHHHHHHhccCcEEEeecc----cCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS----LRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~----~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
.+++.+.+.. ......+.++|..+..+++.+.. -.+...+|++++...|++||+++++.|+++.++
T Consensus 327 ~~i~~i~~~~-~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 396 (402)
T TIGR01821 327 SHIVPVIIGD-AALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDR 396 (402)
T ss_pred CCEEEEEeCC-HHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 7788776642 22356788888655334555421 234568999999999999999999999887543
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.7e-10 Score=122.11 Aligned_cols=296 Identities=11% Similarity=-0.018 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
.+...+.+++++++|.+ ..+++++|+++++.++.+. . .+| -.|++++..
T Consensus 84 ~~~~~l~~~la~~~~~~------------~~i~~~~g~~~~~~~l~~~----~------~~g---------d~V~~~~~~ 132 (385)
T PRK05958 84 PAHEALEEELAEWFGAE------------RALLFSSGYAANLAVLTAL----A------GKG---------DLIVSDKLN 132 (385)
T ss_pred HHHHHHHHHHHHHhCCC------------cEEEECcHHHHHHHHHHHh----C------CCC---------CEEEEeCcc
Confidence 34455677888888843 3578888999987655321 1 122 246678899
Q ss_pred chHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccc
Q psy11047 311 HSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 311 HySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i 390 (943)
|.+...++.+.+..++.++. .|.+.+++.++.... .+.+++...-.+.+|.+.|+++|.+
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~~~~---~~~lvi~~~~~~~~G~~~~l~~i~~------------ 192 (385)
T PRK05958 133 HASLIDGARLSRARVRRYPH-----NDVDALEALLAKWRA---GRALIVTESVFSMDGDLAPLAELVA------------ 192 (385)
T ss_pred CHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhccC---CCeEEEEEecccCCCCcCCHHHHHH------------
Confidence 99998888665556777765 378999998875311 1445554445567899999999999
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhh
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRI 470 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l 470 (943)
+|++||+ |+++|.+|+.+ .+ .. .|..... ...+
T Consensus 193 --------ia~~~~~-------~li~De~~~~g-~~--~~---------------------------~g~~~~~--~~~~ 225 (385)
T PRK05958 193 --------LARRHGA-------WLLVDEAHGTG-VL--GP---------------------------QGRGLAA--EAGL 225 (385)
T ss_pred --------HHHHhCC-------EEEEECccccc-cc--CC---------------------------CCCchHH--hhCC
Confidence 9999999 99999999644 22 00 0000000 0001
Q ss_pred cCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHHH
Q psy11047 471 QGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKHI 549 (943)
Q Consensus 471 ~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~I 549 (943)
.. ..-+-+..++||+++......+ ..+.++..-.. ....+...++-. ..+..++.+++.+... .+..
T Consensus 226 ~~-~~~~i~~~s~sK~~~~~Gg~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~~aa~~aal~~~~~~--~~~~ 293 (385)
T PRK05958 226 AG-EPDVILVGTLGKALGSSGAAVL-----GSETLIDYLIN----RARPFIFTTALPPAQAAAARAALRILRRE--PERR 293 (385)
T ss_pred CC-CCceEEEEechhhcccCCcEEE-----cCHHHHHHHHH----hCccceecCCCCHHHHHHHHHHHHHHhcC--HHHH
Confidence 11 1123557889999984321111 01111100000 000011111111 1122222333322110 1111
Q ss_pred HHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCcc
Q psy11047 550 REIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLG 629 (943)
Q Consensus 550 ~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~ 629 (943)
++ ..++++++.+.|++. ++++. ++..+
T Consensus 294 ~~---------------------------------------------------~~~~~~~l~~~L~~~-~~~~~-~~~~~ 320 (385)
T PRK05958 294 ER---------------------------------------------------LAALIARLRAGLRAL-GFQLM-DSQSA 320 (385)
T ss_pred HH---------------------------------------------------HHHHHHHHHHHHHHc-CCCcC-CCCCC
Confidence 22 234556666666654 45554 45778
Q ss_pred EEEEEecCCChHHHHHHHHHhccCcEEEeecc----cCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 630 MVVIRLLGENILTEKLLKRLNSKGRLHCVPAS----LRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 630 iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~----~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
++.|.+++ .....++.++|.++|.+ +.+.. -.+..++|++++..+++++++++++.|+++
T Consensus 321 ~~~~~~~~-~~~~~~~~~~l~~~gI~-v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 321 IQPLIVGD-NERALALAAALQEQGFW-VGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred EEEEEeCC-HHHHHHHHHHHHHCCce-EecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 88988753 22356788888888754 43311 124568999999999999999999998764
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-10 Score=129.27 Aligned_cols=134 Identities=15% Similarity=0.080 Sum_probs=89.4
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...+...++|..+.+++++++|.+.. -++.+|||+|+..++.+- . .|| -.
T Consensus 58 ~~~~~~~~l~~~~~~~~~~~~g~~~~-----------~v~~~sgt~a~~~~l~~l----~------~~G---------d~ 107 (402)
T cd00378 58 GGCEYVDEIEDLAIERAKKLFGAEYA-----------NVQPHSGSQANLAVYFAL----L------EPG---------DT 107 (402)
T ss_pred CCchHHHHHHHHHHHHHHHHhCCCce-----------eeecCCcHHHHHHHHHHh----c------CCC---------CE
Confidence 34566788898899999999998642 355557899998766542 1 122 23
Q ss_pred EEecCCCchHHHHH-----H-HHCCccEEEEec--CC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHH
Q psy11047 304 AYCSDQAHSSVEKA-----G-LIGLVNMRYIES--DD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYC 374 (943)
Q Consensus 304 V~~S~~aHySv~KA-----a-~LG~~~v~~Vp~--D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~ 374 (943)
|++++..|.+.... + ..|. ++..++. +. ++.+|++++++++.... +.+++.+. +.+|...|++
T Consensus 108 Vl~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~id~~~l~~~i~~~~-----~~~v~~~~--~~~~~~~~~~ 179 (402)
T cd00378 108 IMGLDLSHGGHLTHGSFTKVSASGK-LFESVPYGVDPETGLIDYDALEKMALEFK-----PKLIVAGA--SAYPRPIDFK 179 (402)
T ss_pred EEEecCccCccccccccccccccce-eEEEecCCcCcccCCcCHHHHHHHHHhCC-----CCEEEecC--cccCCCcCHH
Confidence 55566566443221 2 2332 4455554 32 68999999999986431 44444433 2457778999
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
+|++ +|++||+ ++++|+++..
T Consensus 180 ~I~~--------------------l~~~~~~-------~li~D~a~~~ 200 (402)
T cd00378 180 RFRE--------------------IADEVGA-------YLLVDMAHVA 200 (402)
T ss_pred HHHH--------------------HHHhcCC-------EEEEEccchh
Confidence 9999 9999999 9999999643
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-09 Score=123.63 Aligned_cols=126 Identities=12% Similarity=-0.020 Sum_probs=88.8
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
+..+.+|+++|.+ ..+++++||+||..++...-. . .+| .+|+++...|.|+
T Consensus 95 ~Le~~la~~~g~~------------~~i~~~sG~~a~~~~i~~l~~-----~---~~g---------~~vi~~~~~h~s~ 145 (410)
T PRK13392 95 LLERELADLHGKE------------SALLFTSGYVSNDAALSTLGK-----L---LPG---------CVILSDALNHASM 145 (410)
T ss_pred HHHHHHHHHhCCC------------CEEEECcHHHHHHHHHHHHhc-----C---CCC---------CEEEEehhhhHHH
Confidence 3445678888864 246677779999887763210 0 111 2577777899999
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++.+.+..+..++.+ |.+.+++.++.... ..+.+|+.+...+.+|.+-|+++|.+
T Consensus 146 ~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~--~~t~~v~i~~~~n~tG~~~~l~~i~~---------------- 202 (410)
T PRK13392 146 IEGIRRSGAEKQVFRHN-----DLADLEEQLASVDP--DRPKLIAFESVYSMDGDIAPIEAICD---------------- 202 (410)
T ss_pred HHHHHHcCCeEEEEeCC-----CHHHHHHHHHhccC--CCCEEEEEeCCCCCCcccccHHHHHH----------------
Confidence 88776544466666532 56677777764321 13667888888889999999999999
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.+|.||+..
T Consensus 203 ----l~~~~~~-------~livDea~~~g 220 (410)
T PRK13392 203 ----LADRYNA-------LTYVDEVHAVG 220 (410)
T ss_pred ----HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999833
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-10 Score=123.81 Aligned_cols=315 Identities=13% Similarity=0.093 Sum_probs=177.1
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
+|.++..+.. .. .+...|...|...+||..+ ++++|.++ .++++||+++++.++.+..
T Consensus 13 ~~~~~~a~~~-~~-~~~~~Y~~~~~~~~L~~~l----a~~~g~~~------------~~v~~~g~~a~~~~l~~~~---- 70 (333)
T PRK10534 13 SRAMLEAMMA-AP-VGDDVYGDDPTVNALQDYA----AELSGKEA------------ALFLPTGTQANLVALLSHC---- 70 (333)
T ss_pred CHHHHHHHHh-cc-CCCcccCCCHHHHHHHHHH----HHHhCCCe------------EEEeCchHHHHHHHHHHhc----
Confidence 3555555443 22 2223344677788888765 67788754 4799999999998887531
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHH--H-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEE
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKA--G-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFS 360 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KA--a-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVa 360 (943)
.+| + .|+++...|.+..++ + .+|...++.++.++++.+|+++|++++.++..++..+.+|+.
T Consensus 71 ------~~g--------d-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l 135 (333)
T PRK10534 71 ------ERG--------E-EYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSL 135 (333)
T ss_pred ------CCC--------C-eeEEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEE
Confidence 122 1 255677778654443 2 355456777887888999999999998653222112444444
Q ss_pred ecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeee
Q psy11047 361 GLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIR 440 (943)
Q Consensus 361 TaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR 440 (943)
+ ++.+|++.|.++|.+ +-.+|++||+ |+++|.||.-. .. ..
T Consensus 136 ~--np~~G~v~~~~~l~~-----------------i~~~~~~~~~-------~lvvDEA~~~~-~~-~~----------- 176 (333)
T PRK10534 136 E--NTHNGKVLPREYLKQ-----------------AWEFTRERNL-------ALHVDGARIFN-AV-VA----------- 176 (333)
T ss_pred e--cCCCCeecCHHHHHH-----------------HHHHHHHcCC-------eEEeeHHHHHH-HH-HH-----------
Confidence 3 456799988766543 1117899999 99999997521 10 00
Q ss_pred ecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCc-
Q psy11047 441 LLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMH- 519 (943)
Q Consensus 441 ~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~- 519 (943)
....... +. ...|.++++++|.++..-+..+ ..++..+..- .....
T Consensus 177 ---------------------~~~~~~~-~~--~~~~~~~~s~SK~~~~~~G~~~----~~~~~~i~~~-----~~~~~~ 223 (333)
T PRK10534 177 ---------------------YGCELKE-IT--QYCDSFTICLSKGLGTPVGSLL----VGNRDYIKRA-----RRWRKM 223 (333)
T ss_pred ---------------------cCCCHHH-HH--hcCCEEEEEeEcCCCCcccceE----EcCHHHHHHH-----HHHHHH
Confidence 0001111 11 2346777789997764311111 0011111000 00000
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCC
Q psy11047 520 WQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFP 599 (943)
Q Consensus 520 ~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p 599 (943)
++.. +.........|...+++..+++. +
T Consensus 224 ~~~~-------~~~~~~~~a~~~~~l~~~~~~~~-----------------------~---------------------- 251 (333)
T PRK10534 224 TGGG-------MRQAGILAAAGLYALKHNVARLQ-----------------------E---------------------- 251 (333)
T ss_pred hCCc-------hhhHHHHHHHHHHHHHhhHHHHH-----------------------H----------------------
Confidence 0000 00000122223333332222210 0
Q ss_pred cHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHH
Q psy11047 600 KFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTND 679 (943)
Q Consensus 600 ~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~e 679 (943)
..+.++++.+.|.+. ++++.. +..|.+.+++.+. ....+.+.|.++|.+ +.+ + ..+|+..++++|.+
T Consensus 252 ---~~~~r~~l~~~L~~~-g~~~~~-~~~nfv~~~~~~~--~~~~~~~~l~~~gi~-v~~----~-~~~rl~~~~r~t~e 318 (333)
T PRK10534 252 ---DHDNAAWLAEQLREA-GADVMR-QDTNMLFVRVGEE--QAAALGEYMRERNVL-INA----S-PIVRLVTHLDVSRE 318 (333)
T ss_pred ---HHHHHHHHHHHHHhC-CCccCC-CCceEEEEECCch--hHHHHHHHHHHcCee-ecC----C-ceEEEEEEeCCCHH
Confidence 123456777788776 777654 4799998888642 246777888888864 333 2 25899777788999
Q ss_pred HHHHHHHHHHHHH
Q psy11047 680 DITRDWNEIRNTA 692 (943)
Q Consensus 680 dId~ll~~I~~~~ 692 (943)
+++++++.|++..
T Consensus 319 ~~~~~~~~l~~~~ 331 (333)
T PRK10534 319 QLAEVVAHWRAFL 331 (333)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999997653
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.2e-10 Score=128.58 Aligned_cols=318 Identities=13% Similarity=0.053 Sum_probs=179.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcE-EE-cCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGG-VL-QTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~G-vf-TsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
....++|..+.+...++|+..+.. .+ .+ .++||.||+.++.+- + .|| -.|
T Consensus 76 ~~~d~lE~~~~~~~~~~f~~~~~~---------~~~nv~~~SG~~AN~av~~aL----~------~pg---------D~I 127 (475)
T PLN03226 76 EYIDQIETLCQKRALEAFRLDPEK---------WGVNVQPLSGSPANFAVYTAL----L------QPH---------DRI 127 (475)
T ss_pred hhHHHHHHHHHHHHHHHhCCCcce---------eEEecCcCchHHHHHHHHHHh----C------CCC---------CEE
Confidence 357899999999999999987642 21 12 388999998776652 1 122 234
Q ss_pred Ee---cC---CCchHHHHHHHHCCccEE----EEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccH
Q psy11047 305 YC---SD---QAHSSVEKAGLIGLVNMR----YIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSY 373 (943)
Q Consensus 305 ~~---S~---~aHySv~KAa~LG~~~v~----~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL 373 (943)
++ +. ..|-++..++.++...+. ....+ ++|.+|.++|++.+... .|.+|++ |.+.+|..-|+
T Consensus 128 l~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~-----~pklIv~--~~S~~s~~~D~ 200 (475)
T PLN03226 128 MGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLF-----RPKLIIA--GASAYPRDWDY 200 (475)
T ss_pred EECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhc-----CCeEEEE--ecCcCCCccCH
Confidence 44 23 345454444444332221 22233 67999999999998753 2555554 34457888889
Q ss_pred HHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHH
Q psy11047 374 CCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLK 453 (943)
Q Consensus 374 ~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~ 453 (943)
++|++ +|+++|. +++||+|++.+ .+ +..
T Consensus 201 a~i~~--------------------ia~~~ga-------~LlvD~AH~~G-li--~~~---------------------- 228 (475)
T PLN03226 201 ARMRK--------------------IADKVGA-------LLMCDMAHISG-LV--AAQ---------------------- 228 (475)
T ss_pred HHHHH--------------------HHHHcCC-------EEEEEchhhhC-cc--cCC----------------------
Confidence 99999 9999999 99999999877 22 100
Q ss_pred HhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccc--cCCCCcccccCccccCCCC--Ccc
Q psy11047 454 RLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLR--HENSGLAIDYMHWQIPLSK--RFR 529 (943)
Q Consensus 454 ~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~--~~~~g~~~d~~~~tie~SR--rfr 529 (943)
..+ .-++.+|.++.+.||||+-+.+..+.- ...++. .++.+...++.. .+..+| .+.
T Consensus 229 --------~~~------~p~~~~Div~~t~hK~L~GP~Gg~I~~----~~~~~~~~~~g~~~~~d~~~-~i~~a~~~~~~ 289 (475)
T PLN03226 229 --------EAA------SPFEYCDVVTTTTHKSLRGPRGGMIFF----RKGPKPPKGQGEGAVYDYED-KINFAVFPGLQ 289 (475)
T ss_pred --------CCC------CCCCCCeEEEecCcccccCCCceEEEE----chhhcccccCCCccHHHHHH-HhccccCCccC
Confidence 011 012468999999999995222222200 000110 000110001100 111111 011
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHH
Q psy11047 530 ALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQK 609 (943)
Q Consensus 530 ALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~ 609 (943)
+ ++...+..++...++.+++ .+...+.+ +..+++++
T Consensus 290 g-----~p~~~~iaal~aAl~~i~~---------------~~~~~~~~------------------------~~~~na~~ 325 (475)
T PLN03226 290 G-----GPHNHTIAALAVALKQAMT---------------PEFKAYQK------------------------QVKANAAA 325 (475)
T ss_pred C-----CchHHHHHHHHHHHHHHhC---------------cCHHHHHH------------------------HHHHHHHH
Confidence 1 1223334555555555321 01111111 14778999
Q ss_pred HHHHHhCCCCeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEEeec-----ccCCCcEEEE----eecCCCCHH
Q psy11047 610 FEALVLGDPRFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA-----SLRIQGLGRA----QNFTRTTND 679 (943)
Q Consensus 610 l~~~L~~~p~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t-----~~~g~~~lR~----v~~~~tt~e 679 (943)
|++.|.+ .+++++.+ ...+++.+.+.....-..++.+.|...|.+.-..+ ..-.+..+|+ +++...+++
T Consensus 326 L~~~L~~-~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~ 404 (475)
T PLN03226 326 LANRLMS-KGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEK 404 (475)
T ss_pred HHHHHHh-CCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHH
Confidence 9998888 69999863 22455555543222123456666777775432111 0012346898 678888999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11047 680 DITRDWNEIRNTATEI 695 (943)
Q Consensus 680 dId~ll~~I~~~~~~l 695 (943)
|++++.+.|.++....
T Consensus 405 d~~~ia~~i~~~~~~~ 420 (475)
T PLN03226 405 DFEKVAEFLHRAVTIA 420 (475)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998876653
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-09 Score=118.80 Aligned_cols=130 Identities=9% Similarity=-0.037 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
...+...+.+++++++|.++ .+++++|+++|..++.+. + .|| -.|++.+
T Consensus 85 ~~~l~~~l~~~la~~~g~~~------------~i~~tsG~~a~~~~~~~l----~------~~g---------d~vi~~~ 133 (397)
T PRK06939 85 TQDLHKELEEKLAKFLGTED------------AILYSSCFDANGGLFETL----L------GKE---------DAIISDA 133 (397)
T ss_pred CcHHHHHHHHHHHHHhCCCc------------EEEEcChHHHHHHHHHHh----C------CCC---------CEEEEEh
Confidence 34566778899999998652 344444588887665331 1 122 2477788
Q ss_pred CCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~ 388 (943)
.+|++...++.+...+++.++. +|+++|++.++.....+..+.+|+...-.+.+|.+.++++|.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~---------- 198 (397)
T PRK06939 134 LNHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICD---------- 198 (397)
T ss_pred hhhHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHH----------
Confidence 9999998887543445555554 5899999988764322223666665555667899999999999
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhc
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 421 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~G 421 (943)
+|++||+ |+++|.+|+
T Consensus 199 ----------la~~~~~-------~li~De~~~ 214 (397)
T PRK06939 199 ----------LADKYDA-------LVMVDDSHA 214 (397)
T ss_pred ----------HHHHhCC-------EEEEECccc
Confidence 9999999 999999995
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-09 Score=122.27 Aligned_cols=297 Identities=12% Similarity=-0.022 Sum_probs=169.6
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
+..+.||+++|.+ ..++.++|++||..++..++.. . ++.+|+.....|.|+
T Consensus 95 ~l~~~la~~~g~~------------~~~~~~sG~~an~~ai~~l~~~--------~---------~~~~i~~~~~~h~s~ 145 (407)
T PRK09064 95 ELERELADLHGKE------------AALVFTSGYVSNDATLSTLAKL--------I---------PDCVIFSDELNHASM 145 (407)
T ss_pred HHHHHHHHHhCCC------------cEEEECcHHHHHHHHHHHHhCC--------C---------CCCEEEEeCcchHHH
Confidence 3445667888753 2467777889999887765321 0 123566677789888
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++.+....+..++. .|+++|++.++.... ..+.+|+.....+.+|.+.|+++|.+
T Consensus 146 ~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~--~~~~~v~~~~v~s~~G~~~~l~~i~~---------------- 202 (407)
T PRK09064 146 IEGIRRSRCEKHIFRH-----NDVAHLEELLAAADP--DRPKLIAFESVYSMDGDIAPIAEICD---------------- 202 (407)
T ss_pred HHHHHHcCCcEEEECC-----CCHHHHHHHHHhccC--CCCeEEEEeCCCCCCccccCHHHHHH----------------
Confidence 7777544445555543 278899988874311 12567777777788899999999999
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC-
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL- 473 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi- 473 (943)
+|++||+ +++||.||+.+ .+ -+ .|.-+. . ..++
T Consensus 203 ----l~~~~~~-------~livDEa~~~G-~~-g~----------------------------~g~g~~-~----~~~~~ 236 (407)
T PRK09064 203 ----LADKYNA-------LTYLDEVHAVG-MY-GP----------------------------RGGGIA-E----RDGLM 236 (407)
T ss_pred ----HHHHcCC-------EEEEECCCccc-cc-CC----------------------------CCCChH-H----hcCCC
Confidence 9999999 99999999732 11 00 000011 0 1122
Q ss_pred CCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 474 GRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKHIREI 552 (943)
Q Consensus 474 e~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~I~~~ 552 (943)
+..|-++..++|.++......+... .-..++.... ..+....+.. ..+..+..+++.+-.. ....++
T Consensus 237 ~~~div~~t~sKa~g~~GG~~~~~~--~~~~~l~~~~-------~~~~~t~~~~~~~~~aa~~al~~~~~~--~~~~~~- 304 (407)
T PRK09064 237 DRIDIIEGTLAKAFGVMGGYIAGSA--ALVDAVRSYA-------PGFIFTTSLPPAIAAAALASIRHLKES--NEERER- 304 (407)
T ss_pred CCCeEEEEecchhhhccCceEecCH--HHHHHHHHhC-------ccccccCcCCHHHHHHHHHHHHHHhcC--HHHHHH-
Confidence 3458887789998773221100000 0000111000 0011111111 1111112222221110 000111
Q ss_pred HhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEE
Q psy11047 553 FSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVV 632 (943)
Q Consensus 553 l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~ 632 (943)
..++++++.+.|.+. +++++. +..+++.
T Consensus 305 --------------------------------------------------~~~~~~~l~~~L~~~-g~~~~~-~~~~iv~ 332 (407)
T PRK09064 305 --------------------------------------------------HQERAAKLKAALDAA-GIPVMP-NESHIVP 332 (407)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHc-CCCCCC-CCCCEEE
Confidence 245667777777764 566654 4577888
Q ss_pred EEecCCChHHHHHHHHHhccCcEEEeecc----cCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 633 IRLLGENILTEKLLKRLNSKGRLHCVPAS----LRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 633 Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~----~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
|.+.+ ......+.++|..+..+++.+.. -.+...+|++++..+|++|++++++.|+++..+
T Consensus 333 i~~~~-~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~ 397 (407)
T PRK09064 333 VMVGD-PEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWAR 397 (407)
T ss_pred EEeCC-HHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 87743 23356788887654334554321 124468999999999999999999999887543
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-08 Score=118.61 Aligned_cols=427 Identities=11% Similarity=0.076 Sum_probs=227.7
Q ss_pred eeccccCchhHHHHHHHHHhhccceeeecCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCC
Q psy11047 85 IFAQFGPGIRTILITLVICLSLGKIFVVNPQSRKIPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESA 164 (943)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~fl~p~~~~~~~e~fr~~~~~~vd~i~dyl~~~~~~pV~p~~~p~~l~~~l~~~l 164 (943)
+++++.+..|++++..++.-.+- .++.++..+- . +.+.++-+|.+.+ ....-|..|+.++..- ...+ .
T Consensus 28 ~~~~~~~~~~~~~e~~l~~~~~~--~~~~~~~~~~---~-~~~~~~~~~~l~~---~~~p~~l~~~~~~~~~-~~~~--~ 95 (481)
T PLN02822 28 VVFGVHIGGHLVVEGLLIVVIVF--LLSQKSYKPP---K-RPLTEKEIDELCD---EWTPEPLIPPITEEMR-PEPP--V 95 (481)
T ss_pred eEeecCCCchhHHHHHHHHHHHH--HHHcCcCCCC---C-CCCCHHHHHHHHh---cCCCCCCCCCCchhcc-ccCC--c
Confidence 46777889999999887763321 1123333221 1 2444556666665 3334455555333211 1000 0
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCCh---hHHHHHHHHHHHHH
Q psy11047 165 PVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSP---ACTELEIITMNWLG 241 (943)
Q Consensus 165 Pe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SP---aateLE~~Vi~wLa 241 (943)
=+.+++. .+. +. -....++.+..|.|+. ..|.+. +.+..++...+..+..++ .......++.+.|+
T Consensus 96 ~~~~~G~-~i~--~~---G~~~id~~s~~~lgl~----~~~~i~-ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La 164 (481)
T PLN02822 96 LESAAGP-HTI--IN---GKDVVNFASANYLGLI----GNEKIK-ESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIA 164 (481)
T ss_pred eecCCCC-eEE--EC---CceEEEeECCCcCCCC----CCHHHH-HHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHH
Confidence 0011110 000 00 0011122222222222 344443 444555544433222211 23455556667778
Q ss_pred HHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHC
Q psy11047 242 KMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIG 321 (943)
Q Consensus 242 ~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG 321 (943)
+++|.++ ..+|++|++ ++..++.+. . .+ .-+|++....|+|+..++.+.
T Consensus 165 ~~~~~~~-----------~i~~s~G~~-a~~sai~a~----~------~~---------gd~Ii~d~~~H~s~~~~~~ls 213 (481)
T PLN02822 165 KFLGTPD-----------SILYSYGLS-TIFSVIPAF----C------KK---------GDIIVADEGVHWGIQNGLYLS 213 (481)
T ss_pred HHhCCCC-----------EEEECCHHH-HHHHHHHHh----C------CC---------CCEEEEeCCccHHHHHHHHHc
Confidence 8888654 356777666 564443321 1 11 224667888999999988776
Q ss_pred CccEEEEecCCCCCcCHHHHHHHHHHhhcc----CCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchH
Q psy11047 322 LVNMRYIESDDKLSLRGDKLIEAIERDKKK----HLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFP 397 (943)
Q Consensus 322 ~~~v~~Vp~D~~grmD~daLe~aI~~d~~k----G~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR 397 (943)
...++.++.+ |.+.|+..+++.... .....+|+...-..++|.+-|+++|.+
T Consensus 214 ~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~------------------- 269 (481)
T PLN02822 214 RSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVR------------------- 269 (481)
T ss_pred CCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHH-------------------
Confidence 6677888765 456666666543221 112256666555566899999999999
Q ss_pred HHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC--CC
Q psy11047 398 NFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL--GR 475 (943)
Q Consensus 398 ~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi--e~ 475 (943)
+|++||+ ++.+|-+|+-. .+ | .+|+-.... .|+ ..
T Consensus 270 -l~~k~~~-------~LIvDEa~s~g-vl--------G---------------------~~G~G~~e~-----~~v~~~~ 306 (481)
T PLN02822 270 -LKEKYRF-------RVLLDESNSFG-VL--------G---------------------KSGRGLSEH-----FGVPIEK 306 (481)
T ss_pred -HHHHcCC-------EEEEECCcccc-cc--------C---------------------CCCCChHHH-----cCCCCCC
Confidence 9999999 99999999733 21 0 001111111 133 35
Q ss_pred eeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHH---HHHHHH
Q psy11047 476 AQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQ---KHIREI 552 (943)
Q Consensus 476 ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~---~~I~~~ 552 (943)
.|-++.+.+|.++...+..+. ....+.+... ....+++..+-+ +..+.+++.++ +.++ +...+
T Consensus 307 ~dii~~s~sKalg~~GG~i~g-----~~~ii~~~~~----~~~~~~fsa~lP--p~~~~Aa~~aL--~~l~~~~~~~~~- 372 (481)
T PLN02822 307 IDIITAAMGHALATEGGFCTG-----SARVVDHQRL----SSSGYVFSASLP--PYLASAAITAI--DVLEDNPSVLAK- 372 (481)
T ss_pred CeEEEecchhhhhhCCeEEEc-----CHHHHHHHHh----cCCceeeccccC--HHHHHHHHHHH--HHHHhCHHHHHH-
Confidence 788899999998732221110 0011110000 000112211111 11112222222 1111 11111
Q ss_pred HhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEE
Q psy11047 553 FSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVV 632 (943)
Q Consensus 553 l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~ 632 (943)
-.++.++|.+.|.+.+++++..++...++.
T Consensus 373 --------------------------------------------------l~~~~~~l~~~L~~~~g~~~~~~~~spi~~ 402 (481)
T PLN02822 373 --------------------------------------------------LKENIALLHKGLSDIPGLSIGSNTLSPIVF 402 (481)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHhcCCcccCCCCCCCEEE
Confidence 245677888888888888887777888998
Q ss_pred EEecCC-------ChHHHHHHHHHh-ccCcEEEeecc---c---CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 633 IRLLGE-------NILTEKLLKRLN-SKGRLHCVPAS---L---RIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 633 Fr~~g~-------n~l~~~Ll~~L~-~~G~~~~s~t~---~---~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
+++.+. ......+.++|. ++|. ++++.. . ..+..+|++++...|++||+++++.|+++...++.
T Consensus 403 l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV-~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~~~ 480 (481)
T PLN02822 403 LHLEKSTGSAKEDLSLLEHIADRMLKEDSV-LVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASVLK 480 (481)
T ss_pred EEeCCCcccccchHHHHHHHHHHHHhcCCE-EEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 888642 122457788876 6675 555321 1 12346999888888999999999999999887653
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-11 Score=134.17 Aligned_cols=193 Identities=18% Similarity=0.182 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
.|+++..+ ...|.....|..+|.+.++|..+ +++||.+. .+|+++||+||.+|+.+..
T Consensus 8 ~~~m~~a~--~~a~~gd~~Yg~D~~~~~l~~~i----~~l~g~e~------------a~f~~sGT~An~~al~~~~---- 65 (290)
T PF01212_consen 8 TPAMLEAM--AAANVGDDAYGEDPTTARLEERI----AELFGKEA------------ALFVPSGTMANQLALRAHL---- 65 (290)
T ss_dssp -HHEEHHH--HHTTSB-CCTTSSHHHHHHHHHH----HHHHTSSE------------EEEESSHHHHHHHHHHHHH----
T ss_pred CHHHHHHH--HccccCCcccCCChhHHHHHHHH----HHHcCCCE------------EEEeCCCChHHHHHHHHHH----
Confidence 34555444 33455455799999999998755 78999874 5799999999999987643
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHH---HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEE
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG---LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFS 360 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa---~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVa 360 (943)
+ +.-.|+|.+.+|..+.++. .+++.+++.|+.+++|.|++++|++.++......-.|.+|+.
T Consensus 66 ~---------------~~~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~l 130 (290)
T PF01212_consen 66 R---------------PGESVICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSL 130 (290)
T ss_dssp H---------------TTEEEEEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEE
T ss_pred h---------------cCCceeccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEE
Confidence 1 1234788999999987754 367778999998777999999999999985442233455555
Q ss_pred ecCCCcc--cccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceee
Q psy11047 361 GLALPAF--LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVV 438 (943)
Q Consensus 361 TaGTT~t--GaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~Vc 438 (943)
+ -||+. |.+-++++|.+ +..+|++||+ .+|+|||.-+.++. .++
T Consensus 131 e-~t~~~~GG~~~s~~el~a-----------------i~~~a~~~gl-------~lhmDGARl~~a~~------~~~--- 176 (290)
T PF01212_consen 131 E-NTTELAGGTVYSLEELRA-----------------ISELAREHGL-------PLHMDGARLANAAA------ALG--- 176 (290)
T ss_dssp E-SSBTTTTSB---HHHHHH-----------------HHHHHHHHT--------EEEEEETTHHHHHC------HHH---
T ss_pred E-ecCcCCCCeeCCHHHHHH-----------------HHHHHHhCce-------EEEEehhhHHHhhh------ccc---
Confidence 4 55555 77766555444 2229999999 99999995332110 000
Q ss_pred eeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchh
Q psy11047 439 IRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL 495 (943)
Q Consensus 439 FR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L 495 (943)
+ ..+... ..+|+++|++.|.++..-...|
T Consensus 177 ------------------------~-~~~e~~---~~~D~v~~~~tK~~g~~~Gavl 205 (290)
T PF01212_consen 177 ------------------------V-SLAEIA---AGADSVSFGGTKNGGAPGGAVL 205 (290)
T ss_dssp ------------------------H-HHHHHH---TTSSEEEEETTSTT-SSSEEEE
T ss_pred ------------------------c-cHHHHh---hhCCEEEEEEEcccccccceEE
Confidence 0 112222 5789999999999986555443
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-09 Score=121.62 Aligned_cols=158 Identities=11% Similarity=0.025 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 206 SLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 206 silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
..+.+.+..++......|...+...+++..+.+|+.+.+|.+-. ....++|+|||+|+..++.+. .
T Consensus 49 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~--------~~~i~~t~G~~~al~~~~~~l----~-- 114 (391)
T PRK08361 49 KNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVD--------VDNVIVTAGAYEATYLAFESL----L-- 114 (391)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC--------cccEEEeCChHHHHHHHHHHh----c--
Confidence 44555555555443334544455678888888888888775421 136899999999987766542 1
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.+| -.|++.+-+|.+...++...+.+++.++++. ++.+|+++|++.++.. +.+|+.+..
T Consensus 115 ----~~g---------~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~------~~~v~i~~p 175 (391)
T PRK08361 115 ----EEG---------DEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKR------TRMIVINYP 175 (391)
T ss_pred ----CCC---------CEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccc------cEEEEEeCC
Confidence 122 2466778888888877755445888888875 4579999999988753 456677778
Q ss_pred CCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++.+|.+-| +++|.+ +|+++++ ++++|.+|+.+
T Consensus 176 ~NPtG~~~~~~~~~~l~~--------------------~~~~~~~-------~ii~De~y~~~ 211 (391)
T PRK08361 176 NNPTGATLDKEVAKAIAD--------------------IAEDYNI-------YILSDEPYEHF 211 (391)
T ss_pred CCCCCcCcCHHHHHHHHH--------------------HHHHcCe-------EEEEEcccccc
Confidence 888999988 777777 8999999 99999999765
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-09 Score=120.67 Aligned_cols=127 Identities=11% Similarity=0.009 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHH-HHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLA-GRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~a-AR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
..++-+.+++++|.+ ..+|+++|++||..|+.+ ++. .+ .-+|+++...|
T Consensus 92 ~~~le~~la~~~g~~------------~~~~~~SG~~An~~ai~~l~~~---------~~---------g~~I~~~~~~H 141 (406)
T PRK13393 92 HVLLEAELADLHGKE------------AALLFTSGYVSNWAALSTLGSR---------LP---------GCVILSDELNH 141 (406)
T ss_pred HHHHHHHHHHHhCCC------------cEEEeCCcHHHHHHHHHHhhcC---------CC---------CCEEEEccchh
Confidence 344446778888864 356677778899888874 221 01 12577788899
Q ss_pred hHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 312 SSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 312 ySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
.|+..++.+....++.++. .|++.+++.+..... ..+.+|+.....+.+|.+-|+++|.+
T Consensus 142 ~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~--~~~~~v~~~~v~~~~G~~~~l~~i~~------------- 201 (406)
T PRK13393 142 ASMIEGIRHSRAEKRIFRH-----NDPADLERKLSDLDP--HRPKLVAFESVYSMDGDIAPIAEICD------------- 201 (406)
T ss_pred HHHHHHHHHcCCeEEEeCC-----CCHHHHHHHHHhccC--CCCEEEEEcCCCCCCCchhCHHHHHH-------------
Confidence 9998888654446666654 267888887764311 12567777777788899999999999
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.|++.+
T Consensus 202 -------l~~~~~~-------~livDea~~~g 219 (406)
T PRK13393 202 -------VAEKHGA-------MTYLDEVHAVG 219 (406)
T ss_pred -------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999743
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8e-09 Score=115.41 Aligned_cols=157 Identities=11% Similarity=0.007 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhh
Q psy11047 207 LLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKY 286 (943)
Q Consensus 207 ilgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~ 286 (943)
.+.+.+...+......|..+....++...+.+|+.+.+|.+-. ....++|+||++++..++.+..
T Consensus 41 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~--------~~~i~~t~g~~~al~~~~~~l~------- 105 (382)
T PRK06108 41 FIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATP--------PERIAVTSSGVQALMLAAQALV------- 105 (382)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcC--------cceEEEeCChHHHHHHHHHHhc-------
Confidence 3444444444333233555556678888899999998884322 1357899999999876655321
Q ss_pred cccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC---CCCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD---KLSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 287 ~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~---~grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.+| + .|++.+-+|.....++...+.+++.+|.+. ++.+|+++|++.+... +.+++.+..
T Consensus 106 ---~~g--------d-~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~p 167 (382)
T PRK06108 106 ---GPG--------D-EVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPR------TRALFINSP 167 (382)
T ss_pred ---CCC--------C-EEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCcc------ceEEEEECC
Confidence 122 2 356677788877777754445888888863 4579999999888542 556667777
Q ss_pred CCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++.+|.+-+ +++|.+ +|+++|+ |+++|.+|+.+
T Consensus 168 ~NPtG~~~~~~~~~~l~~--------------------~~~~~~~-------~li~De~y~~~ 203 (382)
T PRK06108 168 NNPTGWTASRDDLRAILA--------------------HCRRHGL-------WIVADEVYERL 203 (382)
T ss_pred CCCCCcccCHHHHHHHHH--------------------HHHHCCc-------EEEEehhhhhh
Confidence 888897754 677777 8999999 99999999876
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-08 Score=114.73 Aligned_cols=157 Identities=11% Similarity=-0.005 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhh
Q psy11047 207 LLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKY 286 (943)
Q Consensus 207 ilgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~ 286 (943)
.+.+.+...++.....|........++..+.+|+.+..|..-. ....++|+|+|+|+..++.+..
T Consensus 48 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~--------~~~i~~~~g~~~a~~~~~~~~~------- 112 (393)
T PRK05764 48 HIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYD--------PSQVIVTTGAKQALYNAFMALL------- 112 (393)
T ss_pred HHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCC--------HHHEEEeCCcHHHHHHHHHHhc-------
Confidence 3445555555433334555555678888888888777664321 1357999999999877665421
Q ss_pred cccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCC
Q psy11047 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLAL 364 (943)
Q Consensus 287 ~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGT 364 (943)
.+| -.|++++-+|.....++..-+.+++.++.+. .+.+|++++++.+... +.+|+.+.-+
T Consensus 113 ---~~g---------d~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~ 174 (393)
T PRK05764 113 ---DPG---------DEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPK------TKALILNSPS 174 (393)
T ss_pred ---CCC---------CEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCcc------ceEEEEECCC
Confidence 112 2467778888887777754344788888863 4679999999988542 4466666677
Q ss_pred Ccccccc---cHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 365 PAFLVVD---SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 365 T~tGaID---pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+|.+- ++++|.+ +|++||+ |+.+|.+|+.+
T Consensus 175 NPtG~~~~~~~~~~l~~--------------------~a~~~~~-------~ii~De~y~~~ 209 (393)
T PRK05764 175 NPTGAVYSPEELEAIAD--------------------VAVEHDI-------WVLSDEIYEKL 209 (393)
T ss_pred CCCCcccCHHHHHHHHH--------------------HHHHCCc-------EEEEeccccce
Confidence 7789874 4778888 9999999 99999999765
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.6e-09 Score=114.70 Aligned_cols=127 Identities=13% Similarity=0.007 Sum_probs=90.8
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+.+|+++|.+.+ ..++|+|+|+++..++.+. . .+| -.|++++-++...
T Consensus 58 ~lr~~ia~~~~~~~~----------~i~~~~G~~~~l~~~~~~l----~------~~g---------d~v~~~~p~y~~~ 108 (346)
T TIGR01141 58 ELKQALADYYGVDPE----------QILLGNGSDEIIELLIRAF----L------EPG---------DAVLVPPPTYSMY 108 (346)
T ss_pred HHHHHHHHHhCcChH----------HEEEcCCHHHHHHHHHHHh----c------CCC---------CEEEEcCCCHHHH
Confidence 456677888887543 5789999999975554432 1 122 2355555444434
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++..-+.+++.+++++++.+|+++|++.+... +.+|+.+..++.+|.+-|++++.+
T Consensus 109 ~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NptG~~~~~~~~~~---------------- 166 (346)
T TIGR01141 109 EISAKIHGAEVVKVPLDEDGQLDLEDILVAIDDK------PKLVFLCSPNNPTGNLLSRSDIEA---------------- 166 (346)
T ss_pred HHHHHHcCCeEEEeccCCCCCCCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 4444443458889999888999999999876432 556777778889999999999988
Q ss_pred chHHHHHHc--CCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSY--FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~--Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+.+ |+ ++.+|.+|+..
T Consensus 167 ----l~~~~~~~~-------~ii~D~~y~~~ 186 (346)
T TIGR01141 167 ----VLERTPEDA-------LVVVDEAYGEF 186 (346)
T ss_pred ----HHHhCCCCc-------EEEEECchhhh
Confidence 88776 88 99999999754
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-08 Score=112.39 Aligned_cols=130 Identities=9% Similarity=-0.052 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
...+-..+.+++++++|.+. .++.++|+++++.++.+.. .+| -.|++++
T Consensus 76 ~~~l~~~l~~~l~~~~g~~~------------~i~~~sG~~a~~~a~~~~~----------~~g---------d~vi~~~ 124 (385)
T TIGR01825 76 TLRLHEELEEKLAKFKKTEA------------ALVFQSGFNTNQGVLSALL----------RKG---------DIVLSDE 124 (385)
T ss_pred CcHHHHHHHHHHHHHhCCCc------------EEEECcHHHHHHHHHHHhC----------CCC---------CEEEEEc
Confidence 34566677888999988542 2455556889886665421 122 2466788
Q ss_pred CCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~ 388 (943)
..|.+...++.+....+..++ .+|++++++.|.+... ..+.+|+...-.+.+|.+.|+++|.+
T Consensus 125 ~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~~~--~~~~~v~~~~v~~~tG~~~~~~~i~~---------- 187 (385)
T TIGR01825 125 LNHASIIDGLRLTKATKKIYK-----HADMDDLDRVLRENPS--YGKKLIVTDGVFSMDGDVAPLPEIVE---------- 187 (385)
T ss_pred cccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhcc--CCCeEEEEecCCcCCCCccCHHHHHH----------
Confidence 899998877755444444443 5789999988876432 12556665555677899999999999
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+++|.+|+.+
T Consensus 188 ----------l~~~~~~-------~li~De~~~~~ 205 (385)
T TIGR01825 188 ----------LAERYGA-------VTYVDDAHGSG 205 (385)
T ss_pred ----------HHHHhCC-------EEEEECccccc
Confidence 9999999 99999999654
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-09 Score=124.52 Aligned_cols=319 Identities=12% Similarity=0.008 Sum_probs=178.6
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCC------------
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPE------------ 292 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pG------------ 292 (943)
..-...++|..+.+...++||.... -|=-.+||.||+.+.++--.-...+---..||
T Consensus 89 g~~~~d~ie~l~~~ra~~lf~a~~a-----------nvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~ 157 (493)
T PRK13580 89 GCQNVDTVEWEAAEHAKELFGAEHA-----------YVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDW 157 (493)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCcc-----------cccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhh
Confidence 4456789999999999999998753 34456789999887775321000000000011
Q ss_pred --chhhhcC-CceEEE-ecCCCchHHHHHH-HHCC-ccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 293 --LEHAEIN-SRLVAY-CSDQAHSSVEKAG-LIGL-VNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 293 --l~~~~i~-~~~vV~-~S~~aHySv~KAa-~LG~-~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
++. .+. .+...+ .+.-.|.+..... ..|. -..+..++| ++|.+|.+++++.+.+. +..|+.+..++
T Consensus 158 ~~~~~-~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~------~plvii~g~S~ 230 (493)
T PRK13580 158 EALRA-ELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREF------KPLILVAGYSA 230 (493)
T ss_pred hhhhc-cCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhhc------CCEEEEeCccc
Confidence 000 000 111111 2444555543222 2332 244555565 57999999999999875 34555556666
Q ss_pred cccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchh
Q psy11047 366 AFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGEN 445 (943)
Q Consensus 366 ~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~n 445 (943)
. +.+-|+++|.+ +|++||. ++.||+|++.+ .+ +.
T Consensus 231 ~-~~~~dl~~i~e--------------------ia~~~gA-------~L~VD~AH~~G-li--gg--------------- 264 (493)
T PRK13580 231 Y-PRRVNFAKLRE--------------------IADEVGA-------VLMVDMAHFAG-LV--AG--------------- 264 (493)
T ss_pred c-CCCcCHHHHHH--------------------HHHHcCC-------EEEEECchhhc-ee--cc---------------
Confidence 6 55778999999 9999999 99999999877 22 10
Q ss_pred hhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC-ccCcc-----hhhhhcccCccccccCCCCcccccCc
Q psy11047 446 ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR-VKNSG-----ALHRTFNVEPLYLRHENSGLAIDYMH 519 (943)
Q Consensus 446 e~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-vr~~~-----~L~~af~~~p~YL~~~~~g~~~d~~~ 519 (943)
. ..+ .....+.++|.++.++||+|+ .+..- .+.+.+....+|+.+
T Consensus 265 --------------~-~~~---~~~~~~~~~D~vtgT~hKaL~GP~GG~I~~~~~l~~~L~~a~P~i~g----------- 315 (493)
T PRK13580 265 --------------K-VFT---GDEDPVPHADIVTTTTHKTLRGPRGGLVLAKKEYADAVDKGCPLVLG----------- 315 (493)
T ss_pred --------------c-cch---hhcCCCCCCcEEEeCChhhccCCCeEEEEecHHHHHHHhhCCCcccC-----------
Confidence 0 000 001123578999999999994 22111 111111101122221
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCC
Q psy11047 520 WQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFP 599 (943)
Q Consensus 520 ~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p 599 (943)
++-.......-.++..+-...+.++.++
T Consensus 316 ----g~l~p~iAA~avAl~e~~~~ef~~y~~~------------------------------------------------ 343 (493)
T PRK13580 316 ----GPLPHVMAAKAVALAEARTPEFQKYAQQ------------------------------------------------ 343 (493)
T ss_pred ----CCccHHHHHHHHHHHHHhCccHHHHHHH------------------------------------------------
Confidence 1101100000001111111112222222
Q ss_pred cHHHHHHHHHHHHHHhCCCCeEEec-CCCccEEEEEecCCChHH-HHHHHHHhccCcEEEe----ecccCC---CcEEEE
Q psy11047 600 KFQSVRLAQKFEALVLGDPRFEIPA-ARHLGMVVIRLLGENILT-EKLLKRLNSKGRLHCV----PASLRI---QGLGRA 670 (943)
Q Consensus 600 ~~~~~~LA~~l~~~L~~~p~~eIl~-~~~l~iV~Fr~~g~n~l~-~~Ll~~L~~~G~~~~s----~t~~~g---~~~lR~ 670 (943)
-.+++++|++.|.+. +|.++. ..+..||.+.+.+. ..+ ..+.++|.+.|. ++. |+.-.+ ..-||+
T Consensus 344 ---l~~Na~~La~~L~~~-G~~vv~ggTdshIV~V~lg~~-~~~g~~a~~~L~e~GI-~vn~i~~Ptvp~g~~~~srLRI 417 (493)
T PRK13580 344 ---VVDNARALAEGFLKR-GARLVTGGTDNHLVLIDVTSF-GLTGRQAESALLDAGI-VTNRNSIPSDPNGAWYTSGIRL 417 (493)
T ss_pred ---HHHHHHHHHHHHHhc-CCCccCCCCCCCEEEEEeCCH-HHHHHHHHHHHHHCCe-EEccccCCCCCCCCCCCceEEe
Confidence 256788888877664 787763 24678888888543 333 356668888885 443 332234 567999
Q ss_pred eecCC----CCHHHHHHHHHHHHHHHHH
Q psy11047 671 QNFTR----TTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 671 v~~~~----tt~edId~ll~~I~~~~~~ 694 (943)
.++.. .+++||+++.+.|.++...
T Consensus 418 g~~A~ttrg~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 418 GTPALTTLGMGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred ccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence 66663 3699999999999887654
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-08 Score=112.99 Aligned_cols=306 Identities=12% Similarity=0.059 Sum_probs=172.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
+...++|+ .+|+++|.++ .++.++|+.+|+.++.+- . .+| -.|++
T Consensus 43 ~~~~~LE~----~lA~~~g~e~------------al~~~sG~~a~~~~i~~l----~------~~G---------D~Vl~ 87 (392)
T PLN03227 43 DAHLELEQ----CMAEFLGTES------------AILYSDGASTTSSTVAAF----A------KRG---------DLLVV 87 (392)
T ss_pred HHHHHHHH----HHHHHhCCCc------------EEEecCcHHHHHHHHHHh----C------CCC---------CEEEE
Confidence 34456665 4578888753 477888888887555431 1 122 35888
Q ss_pred cCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhc--------cCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 307 SDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKK--------KHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 307 S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~--------kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
++..|.|+..++.+....++.++.+ |.+.+++.++.... ....+.+|+.---....|.+-|+++|.+
T Consensus 88 ~~~~h~s~~~~~~l~~~~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~ 162 (392)
T PLN03227 88 DRGVNEALLVGVSLSRANVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVA 162 (392)
T ss_pred eccccHHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHH
Confidence 9999999988876655566666543 24445543332210 0123556665545567799999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhcc
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK 458 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~ 458 (943)
+|++||+ ++++|.+++-. .+ | ..
T Consensus 163 --------------------l~~~~g~-------~livDe~~~~g-~~--------g---------------------~~ 185 (392)
T PLN03227 163 --------------------LKEEFHY-------RLILDESFSFG-TL--------G---------------------KS 185 (392)
T ss_pred --------------------HHHHcCC-------EEEEECccccc-cc--------C---------------------CC
Confidence 9999999 99999999722 21 0 01
Q ss_pred CcccccchhhhhcCCCCeeEEEEcCCCccCccCcc-----hhhhhcccCccccccCCCCcccccCccccCCCCCcchHHH
Q psy11047 459 GRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSG-----ALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKL 533 (943)
Q Consensus 459 G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~-----~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALkl 533 (943)
|+.....+ -+.....+|.++.+.+|+++..-.. .+.+. +.... ..+++.++ ..++.+
T Consensus 186 G~g~~~~~--g~~p~~~~Div~~slsk~~g~~gg~v~~~~~~~~~-------~~~~~-------~~~~~~~~--~~p~~~ 247 (392)
T PLN03227 186 GRGSLEHA--GLKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDH-------QRLSG-------SGYCFSAS--APPFLA 247 (392)
T ss_pred CCcHHHHc--CCCCCCCceEEEeechhhhhccCcEEecCHHHHHH-------HHHhC-------cCccccCC--CCHHHH
Confidence 11111111 0111346799999999997622211 11111 10000 00111111 112333
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHH
Q psy11047 534 WFVIRNF-GIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEA 612 (943)
Q Consensus 534 W~tLr~~-G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~ 612 (943)
|+++..+ ......+.+++ ..+++++|.+
T Consensus 248 ~aa~~al~~~~~~~~~~~~---------------------------------------------------l~~~~~~l~~ 276 (392)
T PLN03227 248 KADATATAGELAGPQLLNR---------------------------------------------------LHDSIANLYS 276 (392)
T ss_pred HHHHHHHHHHhcCHHHHHH---------------------------------------------------HHHHHHHHHH
Confidence 4443322 11111122222 1345566666
Q ss_pred HHhC--CC-------CeEEecCCCccEEEEEecCCCh--------HHHHHHHHHhccCcEEEe-e-c-----ccCCCcEE
Q psy11047 613 LVLG--DP-------RFEIPAARHLGMVVIRLLGENI--------LTEKLLKRLNSKGRLHCV-P-A-----SLRIQGLG 668 (943)
Q Consensus 613 ~L~~--~p-------~~eIl~~~~l~iV~Fr~~g~n~--------l~~~Ll~~L~~~G~~~~s-~-t-----~~~g~~~l 668 (943)
.|++ .| ++.+......+|+.+.+.+... ....+.+++.++|.+... + . ..-.+..+
T Consensus 277 ~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~i 356 (392)
T PLN03227 277 TLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCL 356 (392)
T ss_pred HHHhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceE
Confidence 6653 22 2222234567788888854211 124777888889975532 1 0 11225679
Q ss_pred EEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 669 RAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 669 R~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
|++++...|++||+++++.|+++..+++-.
T Consensus 357 R~~~~~~~t~eei~~~~~~l~~~~~~~~~~ 386 (392)
T PLN03227 357 RVVANASHTREDIDKLLTVLGEAVEAILCK 386 (392)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998877533
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-08 Score=111.82 Aligned_cols=125 Identities=10% Similarity=-0.048 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
..+.+.+++++|.++ .+++++|+++++.++.+. . .+| -.|++++..|.+
T Consensus 64 ~~l~~~la~~~~~~~------------~i~~~~G~~~~~~~l~~~----~------~~g---------d~v~~~~~~~~~ 112 (360)
T TIGR00858 64 EELEEELAEWKGTEA------------ALLFSSGYLANVGVISAL----V------GKG---------DLILSDALNHAS 112 (360)
T ss_pred HHHHHHHHHHhCCCC------------EEEECchHHHHHHHHHHh----C------CCC---------CEEEEEccccHH
Confidence 345566677777532 466677788887654332 1 122 246677889999
Q ss_pred HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 393 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~ 393 (943)
...++.+.+.+++.++. +|.++|++.++.... ..+.+++...-.+.+|.+.|+++|.+
T Consensus 113 ~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~--~~~~~v~~~~~~~~~G~~~~~~~i~~--------------- 170 (360)
T TIGR00858 113 LIDGCRLSGARVRRYRH-----NDVEHLERLLEKNRG--ERRKLIVTDGVFSMDGDIAPLPQLVA--------------- 170 (360)
T ss_pred HHHHHHhcCCceEEecC-----CCHHHHHHHHHHccc--CCCeEEEEeCCccCCCCCcCHHHHHH---------------
Confidence 88887554446666653 689999998875321 12455555555677899999999999
Q ss_pred CchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 394 TNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 394 RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|.+|+.+
T Consensus 171 -----l~~~~~~-------~li~De~~~~~ 188 (360)
T TIGR00858 171 -----LAERYGA-------WLMVDDAHGTG 188 (360)
T ss_pred -----HHHHcCc-------EEEEECccccc
Confidence 9999999 99999999743
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-08 Score=113.81 Aligned_cols=126 Identities=12% Similarity=0.046 Sum_probs=91.0
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++++++++|.+.. ..++|+|||+++..++.+.. .+| + .|++++-++...
T Consensus 70 ~lr~~ia~~l~~~~~----------~v~~~~g~t~al~~~~~~~~----------~~g--------d-~vl~~~p~y~~~ 120 (380)
T PRK06225 70 ELRELILKDLGLDDD----------EALITAGATESLYLVMRAFL----------SPG--------D-NAVTPDPGYLII 120 (380)
T ss_pred HHHHHHHHhcCCCCC----------cEEEeCCHHHHHHHHHHHhc----------CCC--------C-EEEEcCCCCcch
Confidence 466788899988653 68999999999887766421 122 2 355556666656
Q ss_pred HHHHH-HCCccEEEEecCC---CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc---cHHHhhhhcccccccc
Q psy11047 315 EKAGL-IGLVNMRYIESDD---KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD---SYCCLGTAMIVKGLGF 387 (943)
Q Consensus 315 ~KAa~-LG~~~v~~Vp~D~---~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID---pL~eIa~~~~~~d~~~ 387 (943)
..++. .|. .++.++++. ++.+|++++++.+..+ +.+++.+...+.+|.+- ++.+|.+
T Consensus 121 ~~~~~~~g~-~~~~v~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NptG~~~~~~~~~~i~~--------- 184 (380)
T PRK06225 121 DNFASRFGA-EVIEVPIYSEECNYKLTPELVKENMDEN------TRLIYLIDPLNPLGSSYTEEEIKEFAE--------- 184 (380)
T ss_pred HHHHHHhCc-eEEeeccccccCCccCCHHHHHhhcCCC------ceEEEEeCCCCCCCcCCCHHHHHHHHH---------
Confidence 66664 454 778888642 4689999999988643 45666666677888864 4888888
Q ss_pred ccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 388 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 388 ~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|.+|+.+
T Consensus 185 -----------~a~~~~~-------~ii~De~y~~~ 202 (380)
T PRK06225 185 -----------IARDNDA-------FLLHDCTYRDF 202 (380)
T ss_pred -----------HHHHCCc-------EEEEehhHHHH
Confidence 9999999 99999999754
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.5e-10 Score=121.29 Aligned_cols=127 Identities=9% Similarity=-0.050 Sum_probs=96.9
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+.+|+++|.+. .-++|+|+|++|..++.+.. .+| -.|+++..+|.|+
T Consensus 63 ~~~~~~A~~~ga~~-----------~~~~~~Gst~a~~~~l~al~----------~~g---------d~Vlv~~~~h~s~ 112 (294)
T cd00615 63 EAQELAARAFGAKH-----------TFFLVNGTSSSNKAVILAVC----------GPG---------DKILIDRNCHKSV 112 (294)
T ss_pred HHHHHHHHHhCCCC-----------EEEEcCcHHHHHHHHHHHcC----------CCC---------CEEEEeCCchHHH
Confidence 44556789998753 23459999999988776531 122 3577889999999
Q ss_pred HHHHHHCCccEEEEecCCC------CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDDK------LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~------grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~ 388 (943)
..++.+.+..++.++++.+ +.+|++++++++++.. .+.+|+.|.. |.+|.+.|+++|++
T Consensus 113 ~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~----~~k~v~l~~p-~~~G~~~dl~~I~~---------- 177 (294)
T cd00615 113 INGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHP----DAKAAVITNP-TYYGICYNLRKIVE---------- 177 (294)
T ss_pred HHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCC----CceEEEEECC-CCCCEecCHHHHHH----------
Confidence 9988665557777766422 4799999999997632 2567777765 67999999999999
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ +++||+||++.
T Consensus 178 ----------~~~~~g~-------~livDeA~~~~ 195 (294)
T cd00615 178 ----------EAHHRGL-------PVLVDEAHGAH 195 (294)
T ss_pred ----------HHHhcCC-------eEEEECcchhh
Confidence 9999999 99999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-08 Score=118.27 Aligned_cols=342 Identities=10% Similarity=0.030 Sum_probs=185.9
Q ss_pred CCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCcc---ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEE
Q psy11047 186 ITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFT---WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGV 262 (943)
Q Consensus 186 ~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~---~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gv 262 (943)
..++.|-.|+|+-......+..+.+.+...--..+.+ +...+...+ +.+.+|+++|.++ .+
T Consensus 102 ~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~e----le~~lA~~~g~~~------------ai 165 (489)
T PLN02483 102 CLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRE----LEELVARFVGKPA------------AI 165 (489)
T ss_pred EEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHH----HHHHHHHHhCCCc------------EE
Confidence 3467888899987544333333434333321111111 222334444 4556688888654 35
Q ss_pred EcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHH
Q psy11047 263 LQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLI 342 (943)
Q Consensus 263 fTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe 342 (943)
+.++|+.+|+.++.+- + .+| -.|++++..|.|+..++.+.+.+++.++.+ |.++|+
T Consensus 166 ~~~~G~~an~~~i~al----~------~~G---------d~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le 221 (489)
T PLN02483 166 VFGMGYATNSTIIPAL----I------GKG---------GLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLE 221 (489)
T ss_pred EECCHHHHHHHHHHHh----C------CCC---------CEEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHH
Confidence 5566788887544321 1 122 247789999999998887655688888864 467787
Q ss_pred HHHHHhhccCC------CcEEEEEecCC-CcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhh
Q psy11047 343 EAIERDKKKHL------IPFFIFSGLAL-PAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQK 415 (943)
Q Consensus 343 ~aI~~d~~kG~------~P~~VVaTaGT-T~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLH 415 (943)
+.|++....+. ...+++.+-|. +..|.+-++++|.+ +|++||+ |+.
T Consensus 222 ~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~--------------------la~~~~~-------~li 274 (489)
T PLN02483 222 EVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVA--------------------VCKKYKA-------YVY 274 (489)
T ss_pred HHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHH--------------------HHHHcCC-------EEE
Confidence 77764322110 01334444444 66799999999999 9999999 999
Q ss_pred HHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC--CCeeEEEEcCCCccCccCcc
Q psy11047 416 FEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL--GRAQNFTIVPSSLLRVKNSG 493 (943)
Q Consensus 416 VDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi--e~ADSItiDpHK~L~vr~~~ 493 (943)
+|.|++-. .+ | .+|+-.++. .++ ..+|-+..++||.++...+
T Consensus 275 vDEa~s~g-~~--------G---------------------~~G~g~~~~-----~~v~~~~~dI~~~SfSKs~g~~GG- 318 (489)
T PLN02483 275 LDEAHSIG-AV--------G---------------------KTGRGVCEL-----LGVDPADVDIMMGTFTKSFGSCGG- 318 (489)
T ss_pred EECcCccC-cc--------C---------------------CCCCchHHh-----cCCCcccCcEEEEecchhcccCce-
Confidence 99998743 21 0 001101111 111 3568888999999874221
Q ss_pred hhhhhcccCcc---ccccCCCCcccccCccccCCCCCcchHH-HHHHHHHH-HHHH---HHHHHHHHHhcCCCccccccc
Q psy11047 494 ALHRTFNVEPL---YLRHENSGLAIDYMHWQIPLSKRFRALK-LWFVIRNF-GIKG---LQKHIREIFSGLALPAFLVVD 565 (943)
Q Consensus 494 ~L~~af~~~p~---YL~~~~~g~~~d~~~~tie~SRrfrALk-lW~tLr~~-G~~G---l~~~I~~~l~~~~~~~~l~~~ 565 (943)
.+. ..+. ++.....+ +...++-...++. +-.+++.+ +.+| ..+.+++
T Consensus 319 ~i~----~~~~li~~l~~~~~~-------~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~-------------- 373 (489)
T PLN02483 319 YIA----GSKELIQYLKRTCPA-------HLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQ-------------- 373 (489)
T ss_pred EEE----cCHHHHHHHHHhCcc-------ccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHH--------------
Confidence 110 0001 11100000 0000010000000 00011111 0000 0011111
Q ss_pred cccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHH
Q psy11047 566 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKL 645 (943)
Q Consensus 566 ~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~L 645 (943)
-.+.+++|.+.|++. ++++..+....++.+.+.. ......+
T Consensus 374 -------------------------------------l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l~l~~-~~~~~~~ 414 (489)
T PLN02483 374 -------------------------------------IRENSNFFRSELQKM-GFEVLGDNDSPVMPIMLYN-PAKIPAF 414 (489)
T ss_pred -------------------------------------HHHHHHHHHHHHHHC-CCcccCCCCCCEEEEEECC-HHHHHHH
Confidence 234567788888776 7777655444555555432 1223467
Q ss_pred HHHHhccCcEEEeeccc----CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 646 LKRLNSKGRLHCVPASL----RIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 646 l~~L~~~G~~~~s~t~~----~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
.++|.++|.... +... .+...+|++++...|++||+++++.|+++++.+
T Consensus 415 ~~~Ll~~GI~v~-~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 415 SRECLKQNVAVV-VVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred HHHHHHCCcEEe-eeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 777777886443 3222 234689998888889999999999999876543
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-08 Score=112.07 Aligned_cols=139 Identities=11% Similarity=-0.090 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
...++.++.+.+++++|.+. ...+|++|||+||..|+.++|... + ++-+++...
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~----------~~v~~~~sgsea~~~al~~~~~~~--------~--------~~~ii~~~~ 130 (413)
T cd00610 77 YNEPAVELAELLLALTPEGL----------DKVFFVNSGTEAVEAALKLARAYT--------G--------RKKIISFEG 130 (413)
T ss_pred CCHHHHHHHHHHHHhCCCCC----------CEEEEcCcHHHHHHHHHHHHHHHc--------C--------CCeEEEECC
Confidence 34566677778888888432 257999999999999999987431 1 233556666
Q ss_pred CCchHHHHHHHHCC------------ccEEEEecCC------CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc
Q psy11047 309 QAHSSVEKAGLIGL------------VNMRYIESDD------KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 309 ~aHySv~KAa~LG~------------~~v~~Vp~D~------~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI 370 (943)
.-|.+..-+..++. ..++.+|.+. +...|+++|++.++.. +..+.+++..-..+.+|.+
T Consensus 131 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~~~G~~ 207 (413)
T cd00610 131 AYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEH---PEEVAAVIVEPIQGEGGVI 207 (413)
T ss_pred CcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcC---CCCEEEEEEccccCCCCCc
Confidence 77776655554321 1356676652 3455899999988753 1235566666666666887
Q ss_pred cc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 371 DS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 371 Dp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-| +++|.+ +|++||+ ++++|.+++++
T Consensus 208 ~~~~~~l~~l~~--------------------l~~~~~~-------~li~Dev~~g~ 237 (413)
T cd00610 208 VPPPGYLKALRE--------------------LCRKHGI-------LLIADEVQTGF 237 (413)
T ss_pred cCCHHHHHHHHH--------------------HHHHcCC-------EEEEeccccCC
Confidence 66 889988 9999999 99999999865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-08 Score=123.26 Aligned_cols=356 Identities=13% Similarity=0.038 Sum_probs=210.2
Q ss_pred hhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCce--eEEccCCCChHHHH-HHHHHH-HHhccCcccc--CC
Q psy11047 153 PGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYM--HAYFPALNSYPSLL-GDMLSD-AINCLGFTWA--SS 226 (943)
Q Consensus 153 p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf--~g~~~~~~s~~sil-gd~L~~-alN~n~~~~~--~S 226 (943)
|..++..-+..+| .+.+-.++++++.++-..... ...| .||++. -.|+++ -.++.. .+=..-..|. .|
T Consensus 43 P~~i~~~~~l~lp-~~~sE~e~~~~~~~la~~N~~---~~~~ig~G~y~~--~~P~vi~~~i~~~~~~~t~ytPyQ~Eis 116 (954)
T PRK05367 43 PASIRLAEPLDLP-AALSEAEALAELRAIASKNKV---FRSYIGQGYYGT--HTPPVILRNILENPAWYTAYTPYQPEIS 116 (954)
T ss_pred CHHHhcCCCCCCC-CCCCHHHHHHHHHHHHhcCCC---CCcccCCCCCCC--cCcHHHHHHHHhCcchhhccCCCChHHH
Confidence 4455433334565 356788999998876433221 1223 334433 234444 333321 0000111222 12
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
-..-+.-.+...++++|.|++.. ...++.++|.+-- |+..++.. . ++ .+-.|++
T Consensus 117 QG~Leal~~~Qt~la~LtG~~~a----------naSl~d~aTAa~e-a~~~a~~~--~------~~-------~~~~vlv 170 (954)
T PRK05367 117 QGRLEALLNFQTMVADLTGLEIA----------NASLLDEATAAAE-AMALAKRV--S------KS-------KSNRFFV 170 (954)
T ss_pred HHHHHHHHHHHHHHHHHHCCChh----------hccccccHHHHHH-HHHHhhhh--c------cC-------CCCEEEE
Confidence 22223333567789999999864 4678889988854 44444321 0 11 0135889
Q ss_pred cCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 307 SDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 307 S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
++..|.+...+. ...+.+++.++.+++ ++ .+ .. +.+...-.+.+|.+.|+++|++
T Consensus 171 ~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d--~~--------~~------~~-~~vlvq~p~~~G~i~d~~~i~~---- 229 (954)
T PRK05367 171 DDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA--LD--------HD------DV-FGVLLQYPGTSGEVRDYTALIA---- 229 (954)
T ss_pred cCccCHHHHHHHHHHHHhCCCEEEEecCccC--CC--------cc------cE-EEEEEecCCCCeeeccHHHHHH----
Confidence 999999876554 123348888887552 11 11 13 3344445788999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+|+++|. ++.||+.+.+...+ .
T Consensus 230 ----------------~ah~~Ga-------l~~vda~~~Al~~l-----------------------------------~ 251 (954)
T PRK05367 230 ----------------AAHARGA-------LVAVAADLLALTLL-----------------------------------T 251 (954)
T ss_pred ----------------HHHHcCC-------EEEEEehhhhccCC-----------------------------------C
Confidence 9999999 99999966433111 1
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccC-------------ccCcchhhhhcccCccccccC-C-CCc-ccccCccccCCCC
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLR-------------VKNSGALHRTFNVEPLYLRHE-N-SGL-AIDYMHWQIPLSK 526 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~-------------vr~~~~L~~af~~~p~YL~~~-~-~g~-~~d~~~~tie~SR 526 (943)
.| |--.||-+..++|||+. +|+. +.+. ..+..++-. + .|. .+-+...+-+..+
T Consensus 252 ~p-------ge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~--~~r~--lpgrivG~s~d~~g~~~~~lalqtReqhi 320 (954)
T PRK05367 252 PP-------GEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDA--YKRS--MPGRIVGVSVDAAGNPALRLALQTREQHI 320 (954)
T ss_pred Ch-------hhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHH--HHhh--CCCCeeeeecccCCCcccccccccccccc
Confidence 11 11378999999999943 3321 2121 112222211 0 110 0011011222223
Q ss_pred Ccc-h------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCccc
Q psy11047 527 RFR-A------------LKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNF 593 (943)
Q Consensus 527 rfr-A------------LklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~ 593 (943)
|+. | +..++.+.++|..|+++.-++
T Consensus 321 RrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~------------------------------------------ 358 (954)
T PRK05367 321 RREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARR------------------------------------------ 358 (954)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHH------------------------------------------
Confidence 321 2 223333566888888877666
Q ss_pred ccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeec
Q psy11047 594 ILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNF 673 (943)
Q Consensus 594 ~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~ 673 (943)
...+|.++++.|.. +++++..++.++++.|++. .+ ..++.++|.++|... . ......+|++++
T Consensus 359 ---------~~~la~~l~~~L~~-~G~~~~~~~~f~~~~~~~~-~~--~~~i~~~l~~~gi~~-~---~~~~~~l~is~~ 421 (954)
T PRK05367 359 ---------VHRLAAILAAGLRA-LGLEVVHDSFFDTLTVEVG-GD--AAAVLARALAAGINL-R---RVDDDHVGISLD 421 (954)
T ss_pred ---------HHHHHHHHHHHHHh-cCcccCCCCCCCeEEEeCC-CC--HHHHHHHHHHCCcee-c---cccCCEEEEEec
Confidence 35678888888866 7899998888999999974 22 578999999888643 1 222457999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy11047 674 TRTTNDDITRDWNEIR 689 (943)
Q Consensus 674 ~~tt~edId~ll~~I~ 689 (943)
..+|++||+++++.+.
T Consensus 422 e~~t~~did~l~~~l~ 437 (954)
T PRK05367 422 ETTTREDLAALLAVFG 437 (954)
T ss_pred ccCCHHHHHHHHHHHc
Confidence 9999999999999997
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-10 Score=109.95 Aligned_cols=128 Identities=15% Similarity=-0.036 Sum_probs=96.2
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.++++++++.+. ...++++|||+|+..++.+++. + +..|+++...|++.
T Consensus 4 ~~~~~l~~~~~~~~----------~~~~~~~~~t~a~~~~~~~~~~----------~---------~~~v~~~~~~~~~~ 54 (170)
T cd01494 4 ELEEKLARLLQPGN----------DKAVFVPSGTGANEAALLALLG----------P---------GDEVIVDANGHGSR 54 (170)
T ss_pred HHHHHHHHHcCCCC----------CcEEEeCCcHHHHHHHHHHhCC----------C---------CCEEEEeeccccee
Confidence 46788899997332 3689999999999888876531 1 12477788899888
Q ss_pred H-HHHHHCCccEEEEecCCCCCcCHH--HHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 315 E-KAGLIGLVNMRYIESDDKLSLRGD--KLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 315 ~-KAa~LG~~~v~~Vp~D~~grmD~d--aLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
. .++...+.+++.++.+.++..+.+ .+++.. ....|.+++.+..++.+|..+|+++|++
T Consensus 55 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~g~~~~~~~l~~------------- 116 (170)
T cd01494 55 YWVAAELAGAKPVPVPVDDAGYGGLDVAILEELK-----AKPNVALIVITPNTTSGGVLVPLKEIRK------------- 116 (170)
T ss_pred hhhHHHhcCCEEEEeccCCCCccchhhhhhhhcc-----ccCceEEEEEecCcCCCCeEcCHHHHHH-------------
Confidence 7 666555558888888765544332 333322 2335889999999999999999999999
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++|+|+|++++
T Consensus 117 -------~~~~~~~-------~li~D~a~~~~ 134 (170)
T cd01494 117 -------IAKEYGI-------LLLVDAASAGG 134 (170)
T ss_pred -------HHHHcCC-------EEEEecccccc
Confidence 9999999 99999999887
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-08 Score=112.45 Aligned_cols=130 Identities=14% Similarity=0.008 Sum_probs=97.2
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
..+|...++|..+ ++++|.+ ..++|+|||+|+..++.+.. + .+| -.
T Consensus 30 ~~g~~~~~le~~l----a~~~g~~------------~~v~~~sgt~al~lal~al~---~------~~G---------d~ 75 (379)
T PRK11658 30 TTGPKNQALEQAF----CQLTGNQ------------HAIAVSSATAGMHITLMALG---I------GPG---------DE 75 (379)
T ss_pred cCCHhHHHHHHHH----HHHhCCC------------eEEEECCHHHHHHHHHHHcC---C------CCC---------CE
Confidence 3477788888754 6777764 36889999999988876421 0 122 24
Q ss_pred EEecCCCchHHHHHHHHCCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 304 AYCSDQAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 304 V~~S~~aHySv~KAa~LG~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
|+++..+|.+...++..-+..++.++++.+ +.+|+++++++|... +.+|+.+. .+|..-|+++|.+
T Consensus 76 Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~~------tkav~~~~---~~G~~~d~~~i~~---- 142 (379)
T PRK11658 76 VITPSLTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITPR------TKAIIPVH---YAGAPADLDAIRA---- 142 (379)
T ss_pred EEECCCcHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcccC------CeEEEEeC---CCCCcCCHHHHHH----
Confidence 778899999988777544458888988754 579999999998753 44555433 4788889999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|+|++..
T Consensus 143 ----------------~a~~~gi-------~vi~D~a~a~g 160 (379)
T PRK11658 143 ----------------IGERYGI-------PVIEDAAHAVG 160 (379)
T ss_pred ----------------HHHHcCC-------eEEEECCCccC
Confidence 9999999 99999999744
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-09 Score=119.83 Aligned_cols=126 Identities=13% Similarity=0.061 Sum_probs=93.7
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|.. +++++|.+ ..+++++|++||..++.+.. .+| -.|
T Consensus 38 ~~p~~~~le~~----la~l~g~~------------~a~~~~sG~~Ai~~~l~~l~----------~~g---------d~V 82 (369)
T cd00614 38 GNPTVDALEKK----LAALEGGE------------AALAFSSGMAAISTVLLALL----------KAG---------DHV 82 (369)
T ss_pred CChhHHHHHHH----HHHHHCCC------------CEEEEcCHHHHHHHHHHHHc----------CCC---------CEE
Confidence 56888888875 46777764 36889999999988877531 122 246
Q ss_pred EecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+..... ..-+.++..++.+ |++++++++++. +.+|+....++.+|.+.|+++|++
T Consensus 83 l~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------~~~v~~e~~~np~g~~~dl~~i~~-- 149 (369)
T cd00614 83 VASDDLYGGTYRLFERLLPKLGIEVTFVDPD-----DPEALEAAIKPE------TKLVYVESPTNPTLKVVDIEAIAE-- 149 (369)
T ss_pred EECCCCcchHHHHHHHHHhhcCeEEEEeCCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHH--
Confidence 77788888765543 1223467777664 488888888642 567777778888999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ +++||++|+..
T Consensus 150 ------------------la~~~g~-------~livD~t~~~~ 167 (369)
T cd00614 150 ------------------LAHEHGA-------LLVVDNTFATP 167 (369)
T ss_pred ------------------HHHHcCC-------EEEEECCCcch
Confidence 9999999 99999999765
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-08 Score=117.18 Aligned_cols=127 Identities=10% Similarity=0.020 Sum_probs=96.0
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|...++|+. +|++.|.. ..++|++||+|+..++.+. ++ +| -.
T Consensus 61 ~~~p~~~~le~~----lA~l~g~~------------~av~~sSGt~Al~~al~~l----l~------~G---------d~ 105 (433)
T PRK08134 61 ISNPTVAVLEER----VAALEGGV------------GAIATASGQAALHLAIATL----MG------AG---------SH 105 (433)
T ss_pred CcChHHHHHHHH----HHHHhCCC------------cEEEeCCHHHHHHHHHHHH----hC------CC---------CE
Confidence 356788888864 47888764 3599999999998887642 11 22 24
Q ss_pred EEecCCCchHHHHHH-H-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAG-L-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa-~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++...|.+..... . + -+.+++.++++ |+++++++|+.+ +.+|+....++.+|.+-|+++|++
T Consensus 106 Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~~~l~~~i~~~------TklV~~e~~~np~g~v~Di~~I~~- 173 (433)
T PRK08134 106 IVASSALYGGSHNLLHYTLRRFGIETTFVKPG-----DIDGWRAAIRPN------TRLLFGETLGNPGLEVLDIPTVAA- 173 (433)
T ss_pred EEEeCCccHHHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCcccCcccCHHHHHH-
Confidence 778888888765554 2 2 22467777764 799999999764 567777777888999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ +++||++++..
T Consensus 174 -------------------la~~~gi-------~livD~t~a~~ 191 (433)
T PRK08134 174 -------------------IAHEAGV-------PLLVDSTFTTP 191 (433)
T ss_pred -------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999765
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-08 Score=112.22 Aligned_cols=134 Identities=14% Similarity=0.070 Sum_probs=96.5
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
..+|...++|.. +++++|.+ ..++++|||+|+..++.+.. + .+| -.
T Consensus 26 ~~g~~~~~le~~----la~~~g~~------------~~v~~~sgt~al~~~l~al~---~------~~G---------d~ 71 (380)
T TIGR03588 26 TQGPTVPAFEEA----LAEYVGAK------------YAVAFNSATSALHIACLALG---V------GPG---------DR 71 (380)
T ss_pred cCChhHHHHHHH----HHHHHCCC------------eEEEEcCHHHHHHHHHHHcC---C------CCC---------CE
Confidence 346666777665 56777764 25777899999877765421 0 122 24
Q ss_pred EEecCCCchHHHHHHHHCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 304 AYCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 304 V~~S~~aHySv~KAa~LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
|+++..+|.+...++...+..++.++++ +++.+|++++++.|+.... ..+.+|+.+. .+|...|+++|.+
T Consensus 72 Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~--~~t~~v~~~~---~~G~~~~~~~i~~---- 142 (380)
T TIGR03588 72 VWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKG--KLPKAIVPVD---FAGKSVDMQAIAA---- 142 (380)
T ss_pred EEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccC--CCceEEEEeC---CCCccCCHHHHHH----
Confidence 7788889999888875444588888886 4788999999999974311 1245555443 4688889999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.+|+|++.+
T Consensus 143 ----------------l~~~~~~-------~lI~D~a~a~g 160 (380)
T TIGR03588 143 ----------------LAKKHGL-------KIIEDASHALG 160 (380)
T ss_pred ----------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999765
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-08 Score=117.64 Aligned_cols=338 Identities=11% Similarity=0.001 Sum_probs=191.2
Q ss_pred eeEEccCCCChHHHHHH-HHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHH
Q psy11047 194 MHAYFPALNSYPSLLGD-MLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTL 272 (943)
Q Consensus 194 f~g~~~~~~s~~silgd-~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL 272 (943)
|....+-..+ +++-.. |..+... -..|..||...++|..+ ++++|++ ..++|++||.|..
T Consensus 40 ~iDLltDsgT-~aMs~~q~a~~~~G--De~yag~~s~~~lE~~v----a~~~G~~------------~av~v~sGT~Al~ 100 (450)
T TIGR02618 40 YIDLLTDSGT-NAMSDKQWAGLMMG--DEAYAGSRNFYHLERTV----RELYGFK------------YVVPTHQGRGAEN 100 (450)
T ss_pred EEEcccCCCc-HHHHHHHHHHhhhc--chhhcCCCcHHHHHHHH----HHHHCCC------------eEEEcCCHHHHHH
Confidence 4555544444 333333 3333322 24699999999999865 6788886 4799999999944
Q ss_pred HHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH-HHCCccEEEEecC----------CCCCcCHHHH
Q psy11047 273 ICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG-LIGLVNMRYIESD----------DKLSLRGDKL 341 (943)
Q Consensus 273 ~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp~D----------~~grmD~daL 341 (943)
++ ..+ .+ .|| + .| +...|++...+. .+++...+-++.+ .+|.||+++|
T Consensus 101 ll-~~l---~l------~pG--------D-eV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~L 159 (450)
T TIGR02618 101 LL-SQI---AI------KPG--------D-YV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKL 159 (450)
T ss_pred HH-HHh---CC------CCc--------C-EE--CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHH
Confidence 32 111 01 122 2 23 567888887774 3433344444332 4699999999
Q ss_pred HHHHHHhhccCCCcEEEEEecCCCcc-ccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHH
Q psy11047 342 IEAIERDKKKHLIPFFIFSGLALPAF-LVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 417 (943)
Q Consensus 342 e~aI~~d~~kG~~P~~VVaTaGTT~t-GaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVD 417 (943)
+++|++.... . ..+|+++.-++.. |.. .++.++.+ +|++||+ .+|.|
T Consensus 160 e~aI~~~~~~-~-~~lV~~e~t~N~~GG~pvs~~~l~~I~e--------------------lA~~~Gl-------~vi~D 210 (450)
T TIGR02618 160 QKLIDEVGAD-K-IPYICLAVTVNLAGGQPVSMANMREVRE--------------------LCEAHGI-------KVFYD 210 (450)
T ss_pred HHHhccccCc-c-cCceEEEEecccCCCeeCCHHHHHHHHH--------------------HHHHcCC-------EEEEE
Confidence 9999854221 1 2355555544444 555 56888888 9999999 99999
Q ss_pred hhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccccc--c-hhhhhcCCCCeeEEEEcCCCccCccCcch
Q psy11047 418 ALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV--P-ASLRIQGLGRAQNFTIVPSSLLRVKNSGA 494 (943)
Q Consensus 418 AA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p--~-~r~~l~Gie~ADSItiDpHK~L~vr~~~~ 494 (943)
||.....++-|- -.+.|-.-.+ + .+.. ..+||++++++||-.+++-++.
T Consensus 211 aAR~~gNA~~I~-------------------------~re~g~~~~~i~ei~~e~---~~~aD~~~~S~~Kd~~~~~GG~ 262 (450)
T TIGR02618 211 ATRCVENAYFIK-------------------------EREQGYEDKSIAEILKEM---MSYADGCTMSGKKDCLVNIGGF 262 (450)
T ss_pred ccchhhChhhhh-------------------------cccccccCCCHHHHHHHH---hccCcEEEEeeccCCCCCCceE
Confidence 997553222000 0000000000 0 0111 3579999999999988543333
Q ss_pred h--------hhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Q psy11047 495 L--------HRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDS 566 (943)
Q Consensus 495 L--------~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~ 566 (943)
+ ..+-.....| + | +..++.-.+|...|+ ..|+.+.+++.. +
T Consensus 263 l~~~d~~l~~k~r~~~~~~---e--G----~~tyGgla~r~~~al----------a~gL~e~~~~~y--------~---- 311 (450)
T TIGR02618 263 LCMNDDEMFQSAKELVVVF---E--G----MPSYGGLAGRDMEAM----------AIGIREAVDYEY--------I---- 311 (450)
T ss_pred EEeCCHHHHHHHHHHhhhc---C--C----ccccCchhhhhHHHH----------HHHHHHhhhHHH--------H----
Confidence 2 1110100011 0 0 011111111222222 235666666521 1
Q ss_pred ccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCC------Ch
Q psy11047 567 YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE------NI 640 (943)
Q Consensus 567 ~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~------n~ 640 (943)
.+.+..+++|++.|.+. ++.++.|+..++|.+..... .+
T Consensus 312 ----------------------------------~~r~~~a~~La~~L~~~-Gvpv~~p~ggh~V~vda~~~lph~~~~~ 356 (450)
T TIGR02618 312 ----------------------------------EHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFLPHIPQDQ 356 (450)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHC-CCcccCCCCcceEEEEhHHhCCCCChhh
Confidence 01345599999999888 89998899999999976541 12
Q ss_pred H-HHHHHHHHh-ccC-------cEEEeeccc------CCCcEEEE-eecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 641 L-TEKLLKRLN-SKG-------RLHCVPASL------RIQGLGRA-QNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 641 l-~~~Ll~~L~-~~G-------~~~~s~t~~------~g~~~lR~-v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
. ...|...|- ..| .++.....- ...-.+|+ +.-.--|.+|++...+.|..+.++
T Consensus 357 ~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 357 FPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH 426 (450)
T ss_pred ChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 2 245555443 223 222221100 11258999 666667999999999998887654
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.5e-08 Score=121.68 Aligned_cols=442 Identities=13% Similarity=0.046 Sum_probs=251.7
Q ss_pred CCCCC--CCCCCHHHHHHHHHHHHcCCCCCCCCCceeE--EccCCCChHHHH-HHHHHHH-HhccCcccc--CChhHHHH
Q psy11047 161 PESAP--VEPEKWDTIMGDIEKVIMPGITHWQSPYMHA--YFPALNSYPSLL-GDMLSDA-INCLGFTWA--SSPACTEL 232 (943)
Q Consensus 161 ~~~lP--e~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g--~~~~~~s~~sil-gd~L~~a-lN~n~~~~~--~SPaateL 232 (943)
+-.+| ..+.+-.++++.+.++-..... +..|.| +++. -+|+.+ -.++... +-..-..|. .|...-+.
T Consensus 75 ~l~lp~~~~~~sE~e~~~~~~~la~kN~~---~~~fiG~G~y~~--~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqa 149 (993)
T PLN02414 75 SMKLSKYDEGLTESQMLEHMKSLASKNKV---FKSYIGMGYYNT--HVPPVILRNILENPGWYTQYTPYQAEIAQGRLES 149 (993)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCc---cccccCCCCCCc--cCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHH
Confidence 33566 2467888999999876443222 223322 2111 133434 4333321 111112333 23444444
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
-.+...++|+|+|++.. ...|+.++|.+--.++++.+. .+| .+-.|++|+..|.
T Consensus 150 l~~~Qt~ia~LtG~~~a----------naSL~d~aTAaaea~~~a~~~---------~~g-------~~~~VlVs~~~hP 203 (993)
T PLN02414 150 LLNYQTMITDLTGLPMS----------NASLLDEGTAAAEAMAMCNNI---------LKG-------KKKKFLIASNCHP 203 (993)
T ss_pred HHHHHHHHHHHhCCChh----------hEeecCChHHHHHHHHHHHhc---------ccC-------CCCEEEEcCccCH
Confidence 44677899999999864 578999999886544443221 111 1235889999999
Q ss_pred HHHHHHH-H---CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccc
Q psy11047 313 SVEKAGL-I---GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388 (943)
Q Consensus 313 Sv~KAa~-L---G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~ 388 (943)
+...++. . -+..++.++.+... ...+ -.+.+.+.-.+.+|.+.|+++|++
T Consensus 204 ~~~~v~~t~a~~~GieV~~v~~~~~~---------~~~~-------~v~~vlvq~P~~~G~v~dv~~I~~---------- 257 (993)
T PLN02414 204 QTIDVCQTRADGLGLEVVVADEKDFD---------YSSG-------DVCGVLVQYPATDGEVLDYAEFVK---------- 257 (993)
T ss_pred hHHHHHHHhhhhcCCEEEEecchhhc---------cccC-------ceEEEEEecCCCCeEEcCHHHHHH----------
Confidence 9776652 2 23478888764311 0111 122334566678999999999999
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhh
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL 468 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~ 468 (943)
+|+++|. .+.| ||...+ .. .+.+-
T Consensus 258 ----------~ah~~Ga-------L~iV-aad~la-l~-----------------------------------~l~~p-- 281 (993)
T PLN02414 258 ----------NAHANGV-------KVVM-ATDLLA-LT-----------------------------------MLKPP-- 281 (993)
T ss_pred ----------HHHHcCC-------EEEE-EECHHH-hc-----------------------------------CCCCH--
Confidence 9999999 7888 665433 11 11111
Q ss_pred hhcCCCCeeEEEEcCCCccC-------------ccCcchhhhhcccCc-cccccCC--CCcccccC-cc-ccCCCCCcc-
Q psy11047 469 RIQGLGRAQNFTIVPSSLLR-------------VKNSGALHRTFNVEP-LYLRHEN--SGLAIDYM-HW-QIPLSKRFR- 529 (943)
Q Consensus 469 ~l~Gie~ADSItiDpHK~L~-------------vr~~~~L~~af~~~p-~YL~~~~--~g~~~d~~-~~-tie~SRrfr- 529 (943)
|--.||-++.++|||+. +++. +.+ ..| ..++... .|. ..+. .. +-+.-+|+.
T Consensus 282 ---ge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~--~~r---~~PgriVG~s~d~~g~-~~~~l~LqtReqhiRrEk 352 (993)
T PLN02414 282 ---GEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQE--YKR---LMPGRIIGVSVDSSGK-PALRMAMQTREQHIRRDK 352 (993)
T ss_pred ---hhccCcEEEECCCccccCCCCCCCCeeEEEECHH--HHh---hCCCcccCcccCCCCC-cccccccccccchhhhcc
Confidence 11278999999999993 3322 111 122 2222110 010 0000 00 112222221
Q ss_pred -------hHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCccccccc
Q psy11047 530 -------ALKLWFVI-----RNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSY 597 (943)
Q Consensus 530 -------ALklW~tL-----r~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~ 597 (943)
+..++..+ .++|..|+++.-++
T Consensus 353 aTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~r---------------------------------------------- 386 (993)
T PLN02414 353 ATSNICTAQALLANMAAMYAVYHGPEGLKTIAQR---------------------------------------------- 386 (993)
T ss_pred cccchhHHHHHHHHHHHHHHHHhccccHHHHHHH----------------------------------------------
Confidence 12333333 34455666655444
Q ss_pred CCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCC
Q psy11047 598 FPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTT 677 (943)
Q Consensus 598 ~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt 677 (943)
..+++.++++.|.+ +++++..++.+++|+|++. + ++++.++|.++|. .+.. .....+|++++..+|
T Consensus 387 -----i~~la~~l~~~L~~-~G~~~~~~~~f~~vt~~~~--~--~~~v~~~L~~~gI-~l~~---~~~~~lrvs~~e~~T 452 (993)
T PLN02414 387 -----VHGLAGVFAAGLKK-LGFQVQSLPFFDTVKVKCS--D--ADAIADAAAKVGI-NLRV---VDANTVTVSFDETTT 452 (993)
T ss_pred -----HHHHHHHHHHHHhh-cCCccCCCCCcCeEEEecC--C--HHHHHHHHHHCCC-eeEE---ecCCeEEEEeeccCC
Confidence 35688888888866 5799998888999999984 2 4788899988886 3332 113469999999999
Q ss_pred HHHHHHHHHHHHHHH--H---H-HHHHHhhhhhcc-cccccccc----cccc----------------------------
Q psy11047 678 NDDITRDWNEIRNTA--T---E-ILAELAEETQRV-QVTKRTRV----PLKE---------------------------- 718 (943)
Q Consensus 678 ~edId~ll~~I~~~~--~---~-ll~~~~~~~~~~-~~~~~~~~----~~~~---------------------------- 718 (943)
++||+++++.+.... . + +..+.. ..+ ..-.|+.. |.+.
T Consensus 453 ~edId~L~~~l~~~~~~~~~~~~~~~~~~---~~~p~~~~r~~~~l~~p~f~~~~se~~~~r~~~~l~~~~~~~~~~~~p 529 (993)
T PLN02414 453 LEDVDKLFKVFAGGKPVPFTAESLAPEVD---SSIPSSLARESPYLTHPIFNQYHSEHELLRYLHRLQNKDLSLVHSMIP 529 (993)
T ss_pred HHHHHHHHHHHcccccccchhhhhhhhhc---ccCchhhhccCccccCcccccccCHHHHHHHHHHHhhcccccccCCcc
Confidence 999999999997541 1 1 111100 000 00012211 2211
Q ss_pred ----cccccccccccccc----cC-CCCcc-chhccchhhhccchhHHhhhcccccceeeeccCCC----hHHHHHHHhh
Q psy11047 719 ----TKGRNALFGSSLLL----AN-SPMSP-KIMNGSFAAVFDADESIMNGWTHGIAQIQCDSNDS----PSMRRRIRGI 784 (943)
Q Consensus 719 ----~~~~~~~~g~~~~~----~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 784 (943)
|---||..-+.... ++ -|+.| .++.|....+|+..+.|++ +. .+..+.+.+.-. -++--=||++
T Consensus 530 lgsctmk~n~~~~~~~~~~~~~~~~hp~~p~~~~~g~~~~~~~~r~~la~-i~-g~~~v~f~pnaga~ge~a~~~vi~~~ 607 (993)
T PLN02414 530 LGSCTMKLNATTEMMPVTWPEFANIHPFAPVDQAQGYQEMFEDLGDLLCE-IT-GFDSFSLQPNAGAAGEYAGLMVIRAY 607 (993)
T ss_pred CcccccccCchhhhhhhcCcchhhcCCCCCHHHHHHHHHHHHHHHHHHHH-Hh-CCCeEEEcCCCcHHHHHHHHHHHHHH
Confidence 22234443332221 11 35555 4588999999999999998 54 346777776655 6888889999
Q ss_pred hhc-Cc
Q psy11047 785 LMS-GK 789 (943)
Q Consensus 785 ~~~-~~ 789 (943)
+.+ |.
T Consensus 608 ~~~~Gd 613 (993)
T PLN02414 608 HLSRGD 613 (993)
T ss_pred HhccCC
Confidence 877 54
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.1e-08 Score=107.72 Aligned_cols=128 Identities=15% Similarity=0.013 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEE-cCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVL-QTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf-TsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
.++.+.+|+++|.+.+ ..++ |+|+++++..++.+. . .+| -.|++++-++.
T Consensus 72 ~~lr~~ia~~~~~~~~----------~i~~~~~Ga~~~i~~~~~~~----~------~~g---------d~vlv~~p~y~ 122 (361)
T PRK00950 72 PELREALSKYTGVPVE----------NIIVGGDGMDEVIDTLMRTF----I------DPG---------DEVIIPTPTFS 122 (361)
T ss_pred HHHHHHHHHHhCCCHH----------HEEEeCCCHHHHHHHHHHHh----c------CCC---------CEEEEcCCChH
Confidence 3455667788888653 4667 677777765444321 1 122 23555554444
Q ss_pred HHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccc
Q psy11047 313 SVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKL 392 (943)
Q Consensus 313 Sv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L 392 (943)
....++...+.+++.++.++++.+|+++|++.+... +.+|+.+...+.+|.+-|++++.+
T Consensus 123 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~-------------- 182 (361)
T PRK00950 123 YYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEK------TKVIFLCTPNNPTGNLIPEEDIRK-------------- 182 (361)
T ss_pred HHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhccC------CCEEEEeCCCCCCCCCcCHHHHHH--------------
Confidence 444455444458888988888899999999988542 456666778899999999999999
Q ss_pred cCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 393 QTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 393 ~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|.+|+.+
T Consensus 183 ------l~~~~~~-------~li~De~y~~~ 200 (361)
T PRK00950 183 ------ILESTDA-------LVFVDEAYVEF 200 (361)
T ss_pred ------HHHHCCc-------EEEEECchhhh
Confidence 9999999 99999999755
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6e-08 Score=118.47 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=99.2
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE 315 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~ 315 (943)
.-+..|++||.+.. -.+|.|+|.+|+.++.++- .+| -.|++...+|-|+.
T Consensus 210 Aq~~aA~~fgA~~t-----------~FlvNGST~gn~a~i~a~~----------~~g---------d~Vlv~RN~HKSv~ 259 (755)
T PRK15029 210 SEKYAARVFGADRS-----------WSVVVGTSGSNRTIMQACM----------TDN---------DVVVVDRNCHKSIE 259 (755)
T ss_pred HHHHHHHHhCCCcE-----------EEEeCChhHHHHHHHHHhc----------CCC---------CEEEeecccHHHHH
Confidence 34567999999765 4689999999986655432 122 25889999999999
Q ss_pred HHHHHCCccEEEEecC--C---CCCcC-----HHHHHHHHHHhhc----cCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 316 KAGLIGLVNMRYIESD--D---KLSLR-----GDKLIEAIERDKK----KHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 316 KAa~LG~~~v~~Vp~D--~---~grmD-----~daLe~aI~~d~~----kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
.|+.|.+...+++++. . .+.++ ++.++++|++.+. .+..|..|+.|.. |..|.+-++++|++
T Consensus 260 ~al~L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~--- 335 (755)
T PRK15029 260 QGLILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQD--- 335 (755)
T ss_pred HHHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHH---
Confidence 9998766666666542 2 23445 9999999987542 2345777777765 55688889999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcc
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 426 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~af 426 (943)
+|+++|+ .+|||-|||+...|
T Consensus 336 -----------------~~h~~~~-------~llvDEAhGah~~F 356 (755)
T PRK15029 336 -----------------LLEKTSD-------RLHFDEAWYGYARF 356 (755)
T ss_pred -----------------HHHhcCC-------eEEEECcccccccc
Confidence 9999999 99999999998444
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-07 Score=106.74 Aligned_cols=157 Identities=11% Similarity=-0.046 Sum_probs=106.6
Q ss_pred HHHHHHHHHh-ccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhh
Q psy11047 208 LGDMLSDAIN-CLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKY 286 (943)
Q Consensus 208 lgd~L~~alN-~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~ 286 (943)
+.+.+...++ .....|........+-..+.+++++.+|.+-. +....++|+|++++...++.+. +
T Consensus 45 ~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~-------~~~~i~~t~G~~~~l~~~~~~~----~--- 110 (389)
T PRK05957 45 AIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELN-------NEQAIVVTAGSNMAFMNAILAI----T--- 110 (389)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------CCCeEEEeCChHHHHHHHHHHh----c---
Confidence 3444444443 22223444444456667788899999887421 0125789999999986665432 1
Q ss_pred cccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCc
Q psy11047 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPA 366 (943)
Q Consensus 287 ~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~ 366 (943)
.+| -.|++++-.+.....++..-+.+++.++.++++.+|+++|++.|+.+ +.+|+.+...+.
T Consensus 111 ---~~g---------d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~klv~~~~p~NP 172 (389)
T PRK05957 111 ---DPG---------DEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPK------TRAIVTISPNNP 172 (389)
T ss_pred ---CCC---------CEEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCcC------ceEEEEeCCCCC
Confidence 122 23566665554444444333447888999888899999999988643 557777778899
Q ss_pred cccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 367 FLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 367 tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|.+-| +++|.+ +|++||+ ++.+|.+|+.+
T Consensus 173 tG~~~~~~~~~~i~~--------------------~a~~~~~-------~li~De~y~~~ 205 (389)
T PRK05957 173 TGVVYPEALLRAVNQ--------------------ICAEHGI-------YHISDEAYEYF 205 (389)
T ss_pred CCcCcCHHHHHHHHH--------------------HHHHcCc-------EEEEeccchhc
Confidence 999877 777888 9999999 99999999865
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-08 Score=115.38 Aligned_cols=127 Identities=9% Similarity=0.000 Sum_probs=90.1
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|....+|+. +++++|.+ ..+++++|+.|+..++.+. + .+| -.|
T Consensus 67 ~~pt~~~le~~----la~l~g~~------------~~v~fsSG~~Ai~~al~~l----l------~~G---------d~V 111 (437)
T PRK05613 67 TNPTVEALENR----IASLEGGV------------HAVAFASGQAAETAAILNL----A------GAG---------DHI 111 (437)
T ss_pred cChHHHHHHHH----HHHHhCCC------------eEEEeCCHHHHHHHHHHHh----c------CCC---------CEE
Confidence 45777777764 57888874 3577777888887665432 1 122 257
Q ss_pred EecCCCchHHHHHH--HH--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG--LI--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa--~L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+..... .+ -+.++..++ +. .|+++++++|+++ +.+|+...-++.+|.+-|+++|++
T Consensus 112 I~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~---~d~e~l~~~l~~~------tk~V~~e~~~Np~~~v~di~~I~~-- 179 (437)
T PRK05613 112 VTSPRLYGGTETLFLVTLNRLGIEVTFVE-NP---DDPESWQAAVQPN------TKAFFGETFANPQADVLDIPAVAE-- 179 (437)
T ss_pred EECCCccHHHHHHHHHHHHhcCeEEEEEC-CC---CCHHHHHHhCCcc------CeEEEEECCCCCCCcccCHHHHHH--
Confidence 88899999875433 12 234677776 22 2789999988764 445666666777889999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ .++||++++..
T Consensus 180 ------------------la~~~gi-------~livD~t~a~g 197 (437)
T PRK05613 180 ------------------VAHRNQV-------PLIVDNTIATA 197 (437)
T ss_pred ------------------HHHHcCC-------eEEEECCCccc
Confidence 9999999 99999999655
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.8e-08 Score=109.40 Aligned_cols=319 Identities=15% Similarity=0.121 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
..+|-.++-+||+++-|++.-.+ =-..|+.+-+.+|++-|.+... + | -..+-++++++
T Consensus 107 ~l~li~~Lq~~L~~ITG~DavsL-----------QP~AGAqGE~aGll~Ir~YHe~-----r-G-----~~~R~~~LIP~ 164 (496)
T COG1003 107 YLELIYELQEWLKEITGMDAVSL-----------QPNAGAQGEYAGLLAIRAYHES-----R-G-----EGHRNICLIPD 164 (496)
T ss_pred HHHHHHHHHHHHHHhcCCceeec-----------cCCCCcchhhHHHHHHHHHHHH-----c-C-----CCcCcEEEeec
Confidence 45666778899999999985422 1234667778889888765422 1 1 12456788999
Q ss_pred CCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc-ccHHHhhhhcccccccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV-DSYCCLGTAMIVKGLGF 387 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI-DpL~eIa~~~~~~d~~~ 387 (943)
.+|=...-.|.+++-+|+.|+|+++|.+|+++|++.+.++ ..++..|..+|- |.+ .+|.+|++
T Consensus 165 SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~~~------~AalMiTnPsT~-GvFE~~I~ei~~--------- 228 (496)
T COG1003 165 SAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAEDN------LAALMITNPSTL-GVFEEDIREICE--------- 228 (496)
T ss_pred cccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhccc------eeEEEeccCccc-ccchhhHHHHHH---------
Confidence 9999887777776669999999999999999999999865 567777777665 666 45999999
Q ss_pred ccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchh
Q psy11047 388 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467 (943)
Q Consensus 388 ~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r 467 (943)
+.+++|- -+..|||=--+ .+ | .+.
T Consensus 229 -----------ivH~~Gg-------~vY~DGANlNA-~v--------G--------------------------~~r--- 252 (496)
T COG1003 229 -----------IVHEAGG-------QVYYDGANLNA-IV--------G--------------------------LAR--- 252 (496)
T ss_pred -----------HHHHcCC-------EEEecCcchhh-hh--------c--------------------------ccc---
Confidence 9999998 89999993222 11 1 111
Q ss_pred hhhcCCCCeeEEEEcCCCccCccCcchh-----hhhcccCccccccC---CCCcc--cccC-ccccCCCCCc-c---h-H
Q psy11047 468 LRIQGLGRAQNFTIVPSSLLRVKNSGAL-----HRTFNVEPLYLRHE---NSGLA--IDYM-HWQIPLSKRF-R---A-L 531 (943)
Q Consensus 468 ~~l~Gie~ADSItiDpHK~L~vr~~~~L-----~~af~~~p~YL~~~---~~g~~--~d~~-~~tie~SRrf-r---A-L 531 (943)
+|--.+|-+-++.||.+.++.+.-= ...-..-++||..+ ..+.. .++. .+++.-++.+ . . +
T Consensus 253 ---PGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~ 329 (496)
T COG1003 253 ---PGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILP 329 (496)
T ss_pred ---ccccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHH
Confidence 1334789999999999884332110 00001112344331 01110 0110 1222223322 1 1 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHH
Q psy11047 532 KLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 611 (943)
Q Consensus 532 klW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~ 611 (943)
..|+.++.+|.+|+++.-+.. +-.|.|++
T Consensus 330 ~a~~YI~~mG~~GL~~ase~A---------------------------------------------------vLNANYia 358 (496)
T COG1003 330 IAWAYIRMMGADGLKQASEVA---------------------------------------------------VLNANYIA 358 (496)
T ss_pred HHHHHHHHHhHHHHHHHHHHH---------------------------------------------------HHhHHHHH
Confidence 789999999999999877763 33466666
Q ss_pred HHHhCCCCeEEecCCC---ccEEEEEecC---C-ChHHHHHHHHHhccCcEEEeecc-cC--CCcEEEEeecCCCCHHHH
Q psy11047 612 ALVLGDPRFEIPAARH---LGMVVIRLLG---E-NILTEKLLKRLNSKGRLHCVPAS-LR--IQGLGRAQNFTRTTNDDI 681 (943)
Q Consensus 612 ~~L~~~p~~eIl~~~~---l~iV~Fr~~g---~-n~l~~~Ll~~L~~~G~~~~s~t~-~~--g~~~lR~v~~~~tt~edI 681 (943)
..|+. .++++-.+. ..=+.+.... . ..-...+.+||..-|. | .||. +. -.+.+=+=.--.-+++++
T Consensus 359 ~rL~~--~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~Gf-H-aPT~~FPliV~~tLMIEPTEsEsk~eL 434 (496)
T COG1003 359 RRLKG--YYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLDYGF-H-APTMYFPLIVAGTLMIEPTESESKEEL 434 (496)
T ss_pred HHhhh--cCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhcCC-C-CCcccCccccccceeecCCCCCCHHHH
Confidence 66655 566654322 1112222221 1 1235788899998884 2 3331 22 223333311222357999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11047 682 TRDWNEIRNTATEILAEL 699 (943)
Q Consensus 682 d~ll~~I~~~~~~ll~~~ 699 (943)
|++++++.++++++.+..
T Consensus 435 Drf~dami~I~~Ea~~~~ 452 (496)
T COG1003 435 DRFIDAMIAIREEADAVP 452 (496)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999998877664
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=7e-08 Score=112.56 Aligned_cols=135 Identities=16% Similarity=0.030 Sum_probs=95.6
Q ss_pred CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcC
Q psy11047 220 GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEIN 299 (943)
Q Consensus 220 ~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~ 299 (943)
...|..++...++|..+ ++++|.. ..++|+|||+|+..++.+- + .||
T Consensus 71 ~~~Y~~~~g~~~Lreai----a~~~~~~------------~vv~t~ggt~A~~~~~~al----l------~pG------- 117 (460)
T PRK13238 71 DEAYAGSRSYYRLEDAV----KDIFGYP------------YTIPTHQGRAAEQILFPVL----I------KKG------- 117 (460)
T ss_pred CcccCCCCCHHHHHHHH----HHHhCCC------------cEEECCCHHHHHHHHHHHh----C------CCC-------
Confidence 34577788888888765 5555653 4799999999998876542 1 122
Q ss_pred CceEEEecCCCchHHHHHH-HHCCccEEEEecCC----------CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccc
Q psy11047 300 SRLVAYCSDQAHSSVEKAG-LIGLVNMRYIESDD----------KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFL 368 (943)
Q Consensus 300 ~~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp~D~----------~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tG 368 (943)
+ |+++ ..||....+. .+.+..++.+++++ .|.+|+++|++.|.+... ..+.+|+.+.-++.+|
T Consensus 118 -D--Vii~-~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~--~~tk~Ivl~~p~NptG 191 (460)
T PRK13238 118 -D--VVPS-NYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGA--ENVPFIVMTITNNSAG 191 (460)
T ss_pred -C--EEcc-CCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCC--CceeEEEEecCCCCCC
Confidence 3 3444 4588877776 45455778888753 345999999999985321 1367788887777776
Q ss_pred -cc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhh
Q psy11047 369 -VV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 420 (943)
Q Consensus 369 -aI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~ 420 (943)
.+ +++++|++ +|++||+ |++.|+|+
T Consensus 192 G~v~s~~~l~~I~~--------------------ia~~~gi-------~li~Daa~ 220 (460)
T PRK13238 192 GQPVSMANLRAVYE--------------------IAKKYGI-------PVVIDAAR 220 (460)
T ss_pred CcCCCHHHHHHHHH--------------------HHHHcCC-------EEEEECcc
Confidence 44 44778888 9999999 99999976
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-08 Score=112.28 Aligned_cols=125 Identities=9% Similarity=0.054 Sum_probs=86.0
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|+ .+|+++|.+. .+++++||.|+..++.+. + .+| -.|
T Consensus 61 ~~p~~~~le~----~lA~l~g~~~------------av~~~sG~~Ai~~al~al----~------~~G---------d~V 105 (389)
T PRK05968 61 DNPTVRAFEE----MLAKLEGAED------------ARGFASGMAAISSTVLSF----V------EPG---------DRI 105 (389)
T ss_pred CChhHHHHHH----HHHHHhCCCc------------EEEECCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 4567777776 4588888753 467788898887776531 1 123 235
Q ss_pred EecCCCchHHHH----HHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEK----AGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~K----Aa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+... .+...+.++..++.+ |++++++++. . +.+|+...-|+..+.+.|+++|++
T Consensus 106 l~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~-~------tklV~ie~pt~~~~~~~dl~~i~~-- 171 (389)
T PRK05968 106 VAVRHVYPDAFRLFETILKRMGVEVDYVDGR-----DEEAVAKALP-G------AKLLYLESPTSWVFELQDVAALAA-- 171 (389)
T ss_pred EEeCCCchHHHHHHHHHHHHcCceEEEeCCC-----CHHHHHHhcc-c------CCEEEEECCCCCCCcHHHHHHHHH--
Confidence 666777766432 332223466666643 7888888872 1 345666667777788899999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ .+++|++|+..
T Consensus 172 ------------------la~~~gi-------~vivD~a~a~~ 189 (389)
T PRK05968 172 ------------------LAKRHGV-------VTMIDNSWASP 189 (389)
T ss_pred ------------------HHHHcCC-------EEEEECCCcch
Confidence 9999999 99999999654
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-07 Score=110.22 Aligned_cols=135 Identities=13% Similarity=0.010 Sum_probs=94.2
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 221 FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 221 ~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
..|..++...++|..+ ++++|.+ ..++|+|||+|+..++.+. + .||
T Consensus 47 ~~Y~~~~g~~~Leeai----a~~~g~~------------~vv~t~~Gt~Al~la~~al----~------~pG-------- 92 (431)
T cd00617 47 EAYAGSKSFYDLEDAV----QDLFGFK------------HIIPTHQGRGAENILFSIL----L------KPG-------- 92 (431)
T ss_pred CccCCCCCHHHHHHHH----HHHHCCC------------eEEEcCCHHHHHHHHHHHh----C------CCC--------
Confidence 4588888888998876 5566664 3799999999999887642 1 133
Q ss_pred ceEEEecCCCchHHHHHH-HHCCccEEEEecCC----------CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcc-c
Q psy11047 301 RLVAYCSDQAHSSVEKAG-LIGLVNMRYIESDD----------KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF-L 368 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp~D~----------~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~t-G 368 (943)
+ .| . ...||....++ .+.+...+.++++. .|.||+++|++.|++... ..+.+|+.+..++.+ |
T Consensus 93 D-~V-~-~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~--~~~~~I~v~~p~N~~gG 167 (431)
T cd00617 93 R-TV-P-SNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGA--ENIPYIVLTITNNTAGG 167 (431)
T ss_pred C-EE-c-cCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccC--CCccEEEEECCcCCCCC
Confidence 2 23 3 45888777766 45455777777752 355999999999985411 124566666555555 6
Q ss_pred ccc---cHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhc
Q psy11047 369 VVD---SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 421 (943)
Q Consensus 369 aID---pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~G 421 (943)
.+- .+++|.+ +|++||+ |+|.|+|..
T Consensus 168 ~~~s~~~l~~i~e--------------------ia~~~gi-------~li~DaAr~ 196 (431)
T cd00617 168 QPVSMANLREVRE--------------------LAHKYGI-------PVVLDAARF 196 (431)
T ss_pred ccCCHHHHHHHHH--------------------HHHHcCC-------EEEEEchhh
Confidence 653 4667788 9999999 999999943
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-08 Score=113.96 Aligned_cols=126 Identities=7% Similarity=0.008 Sum_probs=87.9
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|.. +|+++|.+ ..+++++|+.|+..++.+- + .+| -.|
T Consensus 59 ~~pt~~~Le~~----lA~l~G~~------------~al~~~sG~~Ai~~~l~al----~------~~G---------d~V 103 (386)
T PRK06767 59 GNPTVKLFEER----MAVLEGGE------------EALAFGSGMAAISATLIGF----L------KAG---------DHI 103 (386)
T ss_pred CCcchHHHHHH----HHHHhCCC------------cEEEECCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 56777888764 57888864 3588888998876655431 1 122 246
Q ss_pred EecCCCchHHHHHH-HHC---CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG-LIG---LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa-~LG---~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+..... .++ ...+..++. .|++++++++... +.+|+....++.+|.+-|+++|.+
T Consensus 104 v~~~~~y~~~~~~~~~~~~~~gi~~~~~~~-----~d~~~l~~~i~~~------tklV~lesp~NptG~v~dl~~I~~-- 170 (386)
T PRK06767 104 ICSNGLYGCTYGFLEVLEEKFMITHSFCDM-----ETEADIENKIRPN------TKLIFVETPINPTMKLIDLKQVIR-- 170 (386)
T ss_pred EEcCCcHHHHHHHHHHHHhhcCeEEEEeCC-----CCHHHHHHhhCcC------ceEEEEeCCCCCCceecCHHHHHH--
Confidence 67777776655544 222 123344433 3788898888643 567777778888999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|+||+..
T Consensus 171 ------------------la~~~g~-------~vivD~a~a~~ 188 (386)
T PRK06767 171 ------------------VAKRNGL-------LVIVDNTFCSP 188 (386)
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999643
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.1e-07 Score=103.76 Aligned_cols=156 Identities=12% Similarity=-0.013 Sum_probs=111.6
Q ss_pred HHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcc
Q psy11047 209 GDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQ 288 (943)
Q Consensus 209 gd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~ 288 (943)
-+.+...+......|.......+++..+.+|+.+++|.+... ....++|+|||+|+..++.+- +
T Consensus 49 ~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~-------~~~i~~t~G~~~al~~~~~~~----~----- 112 (386)
T PRK09082 49 VEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDA-------DSEITVTAGATEALFAAILAL----V----- 112 (386)
T ss_pred HHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC-------CCcEEEeCCHHHHHHHHHHHH----c-----
Confidence 344444443333344444456788889999999999875320 125889999999987776542 1
Q ss_pred cCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcc
Q psy11047 289 SHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367 (943)
Q Consensus 289 ~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~t 367 (943)
.+| ..|++..-+|.+...++..-+.+++.++.+ +.+.+|++++++.+... +.+|+.+.-.+.+
T Consensus 113 -~~g---------d~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPt 176 (386)
T PRK09082 113 -RPG---------DEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISPR------TRLIILNTPHNPS 176 (386)
T ss_pred -CCC---------CEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCcc------ceEEEEeCCCCCC
Confidence 122 246777889988888885444588888886 46789999999988643 4566666667788
Q ss_pred ccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 368 LVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 368 GaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|.+ +++++|.+ +|++||+ |+++|.+|+..
T Consensus 177 G~~~~~~~~~~i~~--------------------~a~~~~i-------~li~De~y~~~ 208 (386)
T PRK09082 177 GTVWSAADMRALWQ--------------------LIAGTDI-------YVLSDEVYEHI 208 (386)
T ss_pred CcCCCHHHHHHHHH--------------------HHHHCCE-------EEEEehhhhhh
Confidence 976 56888888 9999999 99999999755
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.6e-07 Score=101.89 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
.+..++|++++|.+.. ...+||+|||+||..|+.++|.. | .+-+|.+...-|-+
T Consensus 88 ~~la~~l~~~~~~~~~---------~~v~~~~sgsea~~~al~~~~~~----------g-------~~~ii~~~~~yhg~ 141 (398)
T PRK03244 88 IALAERLVELLGAPEG---------GRVFFCNSGAEANEAAFKLARLT----------G-------RTKIVAAEGGFHGR 141 (398)
T ss_pred HHHHHHHHHhCCCCCC---------CEEEEeCchHHHHHHHHHHHHHH----------C-------CCeEEEECCCcCCc
Confidence 3566688888875421 25899999999999999988741 1 12234444555655
Q ss_pred HHHHHHHCCc------------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhh
Q psy11047 314 VEKAGLIGLV------------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLG 377 (943)
Q Consensus 314 v~KAa~LG~~------------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa 377 (943)
...+..++.. .+..+|. .|+++|++.+.. .+.+|+..-..+.+|.+-| +++|.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~------~~~aviiep~~~~~G~~~~~~~~l~~l~ 210 (398)
T PRK03244 142 TMGALALTGQPAKRAPFEPLPGGVEHVPY-----GDVDALAAAVDD------DTAAVFLEPIQGEAGVVPPPAGYLAAAR 210 (398)
T ss_pred cHHHHhccCCcccccCCCCCCCCceEeCC-----CCHHHHHHhhcC------CeEEEEEecccCCCCCcCCCHHHHHHHH
Confidence 5555433221 2333332 268888887742 2455555555677788766 88888
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|++||+ ++++|.++.|+
T Consensus 211 ~--------------------l~~~~~~-------llI~DEv~~g~ 229 (398)
T PRK03244 211 E--------------------ITDRHGA-------LLVLDEVQTGI 229 (398)
T ss_pred H--------------------HHHHcCC-------EEEEeccccCC
Confidence 8 9999999 99999999875
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.4e-08 Score=109.42 Aligned_cols=126 Identities=10% Similarity=0.039 Sum_probs=92.0
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|+ .+++++|.+ ..++|+||++|+..++.+. + .+| -.|
T Consensus 59 ~~p~~~~le~----~la~l~g~~------------~~v~~ssG~~Ai~~al~al----~------~~G---------d~V 103 (390)
T PRK08133 59 TNPTVTMFQE----RLAALEGAE------------ACVATASGMAAILAVVMAL----L------QAG---------DHV 103 (390)
T ss_pred CChHHHHHHH----HHHHHhCCC------------cEEEECCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 4566666666 457888864 3589999999998877642 1 122 236
Q ss_pred EecCCCchHHHH----HHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEK----AGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~K----Aa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+... .+...+.+++.++++ |.++++++|+.+ +.+|+....++.+|.+.|+++|++
T Consensus 104 i~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~------tklV~ie~p~NptG~v~dl~~I~~-- 170 (390)
T PRK08133 104 VSSRSLFGSTVSLFEKIFARFGIETTFVDLT-----DLDAWRAAVRPN------TKLFFLETPSNPLTELADIAALAE-- 170 (390)
T ss_pred EEccCcchhHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCCcCCHHHHHH--
Confidence 777877766543 232223477777764 688898888653 567777777888999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|.+|+..
T Consensus 171 ------------------la~~~gi-------~livD~t~~~~ 188 (390)
T PRK08133 171 ------------------IAHAAGA-------LLVVDNCFCTP 188 (390)
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999998654
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-07 Score=107.74 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=92.4
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....||.. +|++.|.+ ..++|+||++|+..++.+. + .+| -.
T Consensus 50 ~~npt~~~Le~~----lA~leg~e------------~ivvt~gg~~Ai~~~l~al----l------~~G---------d~ 94 (388)
T PRK08861 50 SGNPNRGLLEQT----LSELESGK------------GAVVTNCGTSALNLWVSAL----L------GPD---------DL 94 (388)
T ss_pred CCCchHHHHHHH----HHHHhCCC------------eEEEECCHHHHHHHHHHHH----c------CCC---------CE
Confidence 456778888775 47777742 5799999999998776542 1 122 24
Q ss_pred EEecCCCchHHHHHH-H-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAG-L-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa-~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++...|.+..+.. . . ++.++..++. .|++++++++.++ +.+|+.+..++.+|.+-|+++|.+
T Consensus 95 Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~-----~d~e~l~~~i~~~------tklV~lesP~NPtG~v~dl~~I~~- 162 (388)
T PRK08861 95 IVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ-----SDAAALDAALAKK------PKLILLETPSNPLVRVVDIAELCQ- 162 (388)
T ss_pred EEEcCCchHHHHHHHHHHHhcCCeEEEEECC-----CCHHHHHHhcCcC------CeEEEEECCCCCCCcccCHHHHHH-
Confidence 667777777655543 2 2 2235555542 4789998888653 668888888899999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|.+|+..
T Consensus 163 -------------------la~~~gi-------~vIvDea~~~~ 180 (388)
T PRK08861 163 -------------------KAKAVGA-------LVAVDNTFLTP 180 (388)
T ss_pred -------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999765
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-07 Score=108.98 Aligned_cols=127 Identities=9% Similarity=-0.012 Sum_probs=91.3
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|....+|. .+|++.|.+ ..+++++|+.|+..++.+. + .+| -.|
T Consensus 67 ~~p~~~~Le~----~lA~l~g~~------------~av~~sSG~aAi~~al~al----l------~~G---------d~V 111 (436)
T PRK07812 67 MNPTQDVVEQ----RIAALEGGV------------AALLLASGQAAETFAILNL----A------GAG---------DHI 111 (436)
T ss_pred CCchHHHHHH----HHHHHhCCC------------eEEEEccHHHHHHHHHHHH----h------CCC---------CEE
Confidence 4577777776 457888764 3689999999988777542 1 122 235
Q ss_pred EecCCCchHHHHHH-H-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG-L-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa-~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+..... . + .+..++.++ +. -|+++++++|+++ +.+|+...-++.+|.+-|+++|++
T Consensus 112 v~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~---~d~e~l~~ai~~~------tklV~ie~~sNp~G~v~Dl~~I~~-- 179 (436)
T PRK07812 112 VSSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP---DDLDAWRAAVRPN------TKAFFAETISNPQIDVLDIPGVAE-- 179 (436)
T ss_pred EEeCCcchHHHHHHHHHhhcCeEEEEEEC-CC---CCHHHHHHhCCCC------CeEEEEECCCCCCCeecCHHHHHH--
Confidence 66777777665543 1 2 223455553 22 2899998888744 567888888889999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.||++++..
T Consensus 180 ------------------la~~~gi-------~liVD~t~a~~ 197 (436)
T PRK07812 180 ------------------VAHEAGV-------PLIVDNTIATP 197 (436)
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999998754
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-07 Score=104.75 Aligned_cols=312 Identities=12% Similarity=0.037 Sum_probs=190.5
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
..||....+-..+++.|..++|-... .--.++++||.+.-.|+.. .+ .|| -.
T Consensus 31 h~s~~F~~~~~~~~~~L~~v~~t~~~---------~~~ll~gsGt~amEAav~s----l~------~pg---------dk 82 (383)
T COG0075 31 HRSPDFVGIMKEVLEKLRKVFGTENG---------DVVLLSGSGTLAMEAAVAS----LV------EPG---------DK 82 (383)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCC---------cEEEEcCCcHHHHHHHHHh----cc------CCC---------Ce
Confidence 57888899999999999999997632 2357778888776444332 11 122 12
Q ss_pred EEecCCCchH--HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 304 AYCSDQAHSS--VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 304 V~~S~~aHyS--v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
|++....-|+ +.+-+...+.+++.+.++-.-.+|+++++++|+++.. .-.|..+++-|.||...|+++|++
T Consensus 83 VLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~----~~~V~~vH~ETSTGvlnpl~~I~~--- 155 (383)
T COG0075 83 VLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPD----IKAVAVVHNETSTGVLNPLKEIAK--- 155 (383)
T ss_pred EEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCC----ccEEEEEeccCcccccCcHHHHHH---
Confidence 3333445554 4444433334788888876778999999999996532 458999999999999999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhh--hcCCCccccccccccceeeeeecchhhhHHHHHHHhhccC
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL--VLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKG 459 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA--~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G 459 (943)
+|++||. .+-|||- +||- .+
T Consensus 156 -----------------~~k~~g~-------l~iVDaVsS~Gg~-~~--------------------------------- 177 (383)
T COG0075 156 -----------------AAKEHGA-------LLIVDAVSSLGGE-PL--------------------------------- 177 (383)
T ss_pred -----------------HHHHcCC-------EEEEEecccCCCc-cc---------------------------------
Confidence 9999999 9999987 4444 11
Q ss_pred cccccchhhhhcCCCCeeEEEEcCCCccCccCcc--------hhhhhcccC-c-cccccCCC---CcccccCccccCCCC
Q psy11047 460 RLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSG--------ALHRTFNVE-P-LYLRHENS---GLAIDYMHWQIPLSK 526 (943)
Q Consensus 460 ~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~--------~L~~af~~~-p-~YL~~~~~---g~~~d~~~~tie~SR 526 (943)
...+ + .+|-+....+|.|..+-+- .+....... + -|+.-... -......++|.+-+
T Consensus 178 --~vd~---w-----giDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~- 246 (383)
T COG0075 178 --KVDE---W-----GIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVN- 246 (383)
T ss_pred --chhh---c-----CccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHH-
Confidence 1111 1 4688889999998822211 111111111 1 23221100 00000111222110
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHH
Q psy11047 527 RFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRL 606 (943)
Q Consensus 527 rfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~L 606 (943)
-+ ..+--+++.+=.+|+.+.+++ |.++
T Consensus 247 ~i--~aL~~al~~i~~EGle~r~~R---------------------------------------------------H~~~ 273 (383)
T COG0075 247 LI--YALREALDLILEEGLEARIAR---------------------------------------------------HRRL 273 (383)
T ss_pred HH--HHHHHHHHHHHHhhHHHHHHH---------------------------------------------------HHHH
Confidence 00 111223343444444444444 6788
Q ss_pred HHHHHHHHhCCCCeEEecCC---CccEEEEEecCCChHHHHHHHHHhccCcEEEeec--ccCCCcEEEE-eecCCCCHHH
Q psy11047 607 AQKFEALVLGDPRFEIPAAR---HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA--SLRIQGLGRA-QNFTRTTNDD 680 (943)
Q Consensus 607 A~~l~~~L~~~p~~eIl~~~---~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t--~~~g~~~lR~-v~~~~tt~ed 680 (943)
++.+.+.+++. +|+++.++ ...+.+|..+..-. ...+..++.+++.+.+++- ++.| .++|+ .++ ..+..|
T Consensus 274 ~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g~~-~~~~~~~~~~~~g~~i~gg~~~l~g-kifRIGhMG-~~~~~d 349 (383)
T COG0075 274 AEALRAGLEAL-GLELFADPERRSPTVTAIKVPEGVD-DKKVRRALLKEYGVEIAGGQGPLKG-KIFRIGHMG-NVRPED 349 (383)
T ss_pred HHHHHHHHHHc-CCccccCcccCCCceEEEECCCCCC-cHHHHHHHHHhCCEEecccccccCc-cEEEEecCc-cCCHHH
Confidence 99999999887 78888733 24556677653211 2344445555544455432 2333 48999 777 889999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11047 681 ITRDWNEIRNTATEIL 696 (943)
Q Consensus 681 Id~ll~~I~~~~~~ll 696 (943)
+...+.+|..+..++.
T Consensus 350 v~~~l~ale~~L~~~g 365 (383)
T COG0075 350 VLAALAALEAALRELG 365 (383)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999988876653
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.7e-08 Score=109.25 Aligned_cols=126 Identities=10% Similarity=0.033 Sum_probs=89.6
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|. .+|+++|.+. ..++++|+.|+..++.+. + .+| -.|
T Consensus 63 ~~p~~~~Le~----~lA~l~G~~~------------~~~~~sG~~Ai~~~l~~~----l------~~G---------d~V 107 (398)
T PRK07504 63 SNPTVDMFEK----RMCALEGAED------------ARATASGMAAVTAAILCQ----V------KAG---------DHV 107 (398)
T ss_pred CCchHHHHHH----HHHHHhCCCe------------eeEecCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 3577777775 5578888864 356889999987666431 1 122 236
Q ss_pred EecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...+.+..... ...+.+++.++ .+|+++++++|+++ +.+|+.+..++.+|.+-|+++|.+
T Consensus 108 l~~~~~y~~~~~~~~~~~~~~G~~v~~vd-----~~d~e~l~~ai~~~------tklV~lesp~NptG~v~dl~~I~~-- 174 (398)
T PRK07504 108 VAARALFGSCRYVVETLLPRYGIESTLVD-----GLDLDNWEKAVRPN------TKVFFLESPTNPTLEVIDIAAVAK-- 174 (398)
T ss_pred EEcCCchhHHHHHHHHHHhhcCeEEEEEC-----CCCHHHHHHhcCcC------ceEEEEECCCCCCcEecCHHHHHH--
Confidence 66676666543332 11233555554 27899999988653 678888888899999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|++|+..
T Consensus 175 ------------------la~~~gi-------~lvvD~a~a~~ 192 (398)
T PRK07504 175 ------------------IANQAGA-------KLVVDNVFATP 192 (398)
T ss_pred ------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999754
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.5e-07 Score=101.28 Aligned_cols=142 Identities=12% Similarity=0.022 Sum_probs=101.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|.......++-..+.+|+++.+|.+-.. ....++|+|++++...++.+- + .+| -
T Consensus 74 Y~~~~G~~~LR~aia~~l~~~~g~~~~~-------~~~I~it~Ga~~al~~~~~~l----~------~~G---------d 127 (405)
T PRK06207 74 YTEYRGDADIRELLAARLAAFTGAPVDA-------ADELIITPGTQGALFLAVAAT----V------ARG---------D 127 (405)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCCEEEeCCcHHHHHHHHHHh----c------CCC---------C
Confidence 4433445678888999999999975220 026899999999986665431 1 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecC-----CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HH
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESD-----DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YC 374 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D-----~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~ 374 (943)
.|++.+-++......+..-+.+++.|+++ .++.+|+++|+++++.. +.+|+.+.-.+-+|.+-+ ++
T Consensus 128 ~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~P~NPTG~~~s~e~l~ 201 (405)
T PRK06207 128 KVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAG------VRVFLFSNPNNPAGVVYSAEEIA 201 (405)
T ss_pred EEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhc------CeEEEECCCCCCCCcCCCHHHHH
Confidence 35556667777666665433477788775 35789999999988653 456777777899999877 66
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|.+ +|++||+ |+.+|.+|+-+
T Consensus 202 ~l~~--------------------~a~~~~~-------~iI~De~Y~~~ 223 (405)
T PRK06207 202 QIAA--------------------LARRYGA-------TVIVDQLYSRL 223 (405)
T ss_pred HHHH--------------------HHHHcCC-------EEEEecccccc
Confidence 6777 8999999 99999999865
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-07 Score=113.06 Aligned_cols=129 Identities=7% Similarity=0.035 Sum_probs=95.3
Q ss_pred HHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHH
Q psy11047 237 MNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEK 316 (943)
Q Consensus 237 i~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~K 316 (943)
-+..|++||.+.. -.+|.|+|.||..++.++- .+| -.|++...+|-|+..
T Consensus 201 e~~AA~~fgAd~t-----------yfvvNGTS~~n~av~~a~~----------~~G---------d~VLvdRN~HKSv~h 250 (714)
T PRK15400 201 EEYIARVFNADRS-----------YMVTNGTSTANKIVGMYSA----------PAG---------STVLIDRNCHKSLTH 250 (714)
T ss_pred HHHHHHHhCCCcE-----------EEEeCchHHHHHHHHHHhc----------CCC---------CEEEeecccHHHHHH
Confidence 3456899999865 4688888999987766532 122 357889999999999
Q ss_pred HHHHCCccEEEEecC--CC---CCcC-----HHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccc
Q psy11047 317 AGLIGLVNMRYIESD--DK---LSLR-----GDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLG 386 (943)
Q Consensus 317 Aa~LG~~~v~~Vp~D--~~---grmD-----~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~ 386 (943)
|+.|.+...++++++ .. |.++ .+.+++.|++.... ..|+.++.|.. |.-|.+-++++|.+
T Consensus 251 aLilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~a-k~p~~~vit~p-TYdG~~yd~~~I~~-------- 320 (714)
T PRK15400 251 LMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITNS-TYDGLLYNTDFIKK-------- 320 (714)
T ss_pred HHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCccc-cCccEEEEECC-CCccEecCHHHHHH--------
Confidence 887766666666543 11 2345 89999999887643 35777888777 66699999999999
Q ss_pred cccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcc
Q psy11047 387 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 426 (943)
Q Consensus 387 ~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~af 426 (943)
+|+.++ +|||-|||+...|
T Consensus 321 ------------~~~~~~---------ilvDEAwgah~~F 339 (714)
T PRK15400 321 ------------TLDVKS---------IHFDSAWVPYTNF 339 (714)
T ss_pred ------------HhCCCC---------EEEEccchhhhcc
Confidence 886554 5999999998444
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-07 Score=112.72 Aligned_cols=127 Identities=9% Similarity=0.070 Sum_probs=94.4
Q ss_pred HHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHH
Q psy11047 238 NWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKA 317 (943)
Q Consensus 238 ~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KA 317 (943)
+..|+.||.+.. -.+|.|+|.||..++.++- .+| -.|++...+|-|+..|
T Consensus 202 ~~aA~~fgAd~t-----------yfvvNGTS~~n~av~~a~~----------~~G---------d~VLvdRN~HKSv~~a 251 (713)
T PRK15399 202 EYIARTFGAEQS-----------YIVTNGTSTSNKIVGMYAA----------PAG---------STLLIDRNCHKSLAHL 251 (713)
T ss_pred HHHHHHhCCCcE-----------EEEeCChHHHHHHHHHHhc----------CCC---------CEEEeecccHHHHHHH
Confidence 455899999865 4688899999988877642 122 3578899999999998
Q ss_pred HHHCCccEEEEecC--C---CCCcCH-----HHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccc
Q psy11047 318 GLIGLVNMRYIESD--D---KLSLRG-----DKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGF 387 (943)
Q Consensus 318 a~LG~~~v~~Vp~D--~---~grmD~-----daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~ 387 (943)
+.|.+...+++++. . -|.++. +.++++|++.... ..|..++.|.+ |.-|.+-++++|.+
T Consensus 252 Lilsga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~-~~p~~vvit~p-TYdGi~yd~~~I~~--------- 320 (713)
T PRK15399 252 LMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQA-QWPVHAVITNS-TYDGLLYNTDWIKQ--------- 320 (713)
T ss_pred HHHcCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCCCc-CCceEEEEECC-CCCceeeCHHHHHH---------
Confidence 87766666666543 2 234455 9999999887643 35788888877 66689999999999
Q ss_pred ccccccCchHHHHHHcCCCCCccchh-hhHHhhhcCCCcc
Q psy11047 388 YKMKLQTNFPNFILSYFPKFQSVRLA-QKFEALVLGDPRF 426 (943)
Q Consensus 388 ~~i~L~RrfR~iar~~Gl~~~~l~lw-LHVDAA~GG~~af 426 (943)
+| |+ . +|||-|||+...|
T Consensus 321 -----------~~---g~-------~~ilvDEAhgah~~F 339 (713)
T PRK15399 321 -----------TL---DV-------PSIHFDSAWVPYTHF 339 (713)
T ss_pred -----------Hh---CC-------CEEEEeccchhhhhc
Confidence 77 66 4 4999999998444
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.3e-07 Score=99.97 Aligned_cols=123 Identities=11% Similarity=-0.058 Sum_probs=88.2
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+++++|+.++.+.+ ..++|+|+++++..++.+.. .+| -.|++++-.+...
T Consensus 64 ~lr~aia~~~~~~~~----------~I~it~G~~~al~~~~~~l~----------~~g---------d~vlv~~P~y~~~ 114 (353)
T PRK05387 64 ALRQAIAAYYGLDPE----------QVFVGNGSDEVLAHAFLAFF----------NHD---------RPLLFPDITYSFY 114 (353)
T ss_pred HHHHHHHHHhCCCHH----------HEEEcCCHHHHHHHHHHHhc----------CCC---------CEEEEeCCCHHHH
Confidence 567778888887654 68999999999877665421 122 2355566555444
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
...+..-+.+++.++.++++.+|+++|++ . ..+|+.+...+-+|.+-|.+++.+
T Consensus 115 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~----~------~~~v~~~~P~NPtG~~~~~~~~~~---------------- 168 (353)
T PRK05387 115 PVYAGLYGIPYEEIPLDDDFSIDVEDYLR----P------NGGIIFPNPNAPTGIALPLAEIER---------------- 168 (353)
T ss_pred HHHHHHcCCEEEEeecCCCCCCCHHHHHh----c------CCEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 44444433488899998889999999863 1 235667778999999999999998
Q ss_pred chHHHHHHc-CCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSY-FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~-Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++.+ ++ |+.+|.+|+.+
T Consensus 169 ----l~~~~~~~-------~livDe~y~~~ 187 (353)
T PRK05387 169 ----ILAANPDS-------VVVIDEAYVDF 187 (353)
T ss_pred ----HHHhCCCc-------EEEEeCccccc
Confidence 87765 78 99999998543
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-07 Score=108.18 Aligned_cols=127 Identities=9% Similarity=-0.027 Sum_probs=89.8
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|.+.++|+. +|+++|.+ ..+++++|+.|+..++.+. + .+| -.
T Consensus 56 ~~~p~~~~le~~----lA~l~g~~------------~av~~~sG~~Ai~~~l~al----~------~~G---------d~ 100 (391)
T TIGR01328 56 LGNPTVSNLEGR----IAFLEGTE------------AAVATSSGMGAIAATLLTI----L------KAG---------DH 100 (391)
T ss_pred CCCchHHHHHHH----HHHHhCCC------------cEEEECCHHHHHHHHHHHH----h------CCC---------CE
Confidence 356778888875 58888874 3589999999987665432 1 122 13
Q ss_pred EEecCCCchHHH----HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVE----KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~----KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++...|.+.. ..+..-+..+..++.+ |+++++++|.++ +.+|+....++.+|.+-|+++|.+
T Consensus 101 Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~-----d~e~l~~~i~~~------tklV~le~p~Np~G~v~dl~~I~~- 168 (391)
T TIGR01328 101 LISDECLYGCTFALLEHALTKFGIQVDFINMA-----IPEEVKAHIKDN------TKIVYFETPANPTMKLIDMERVCR- 168 (391)
T ss_pred EEEecCcchHHHHHHHHHHhcCCeEEEEECCC-----CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHHH-
Confidence 556666664332 2232223466777664 688998888653 567777777788899999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|+||+..
T Consensus 169 -------------------la~~~gi-------~livD~a~a~~ 186 (391)
T TIGR01328 169 -------------------DAHSQGV-------KVIVDNTFATP 186 (391)
T ss_pred -------------------HHHHcCC-------EEEEECCCchh
Confidence 9999999 99999999754
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-07 Score=103.26 Aligned_cols=128 Identities=9% Similarity=-0.034 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
..+.+++++.+|++.+ ..++|+|++++...++.+. . .+| +-.|++++-++..
T Consensus 60 ~~l~~~~a~~~g~~~~----------~I~~~~Gs~e~i~~~~~~~----~------~~g--------~~~vli~~P~y~~ 111 (351)
T PRK01688 60 KAVIENYAAYAGVKPE----------QVLVSRGADEGIELLIRAF----C------EPG--------KDAILYCPPTYGM 111 (351)
T ss_pred HHHHHHHHHHhCCCHH----------HEEEcCCHHHHHHHHHHHh----c------CCC--------CCEEEEcCCCHHH
Confidence 3677789999998765 6889999999986665431 1 111 1246667778877
Q ss_pred HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 393 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~ 393 (943)
...++..-+.+++.+|.++++.+|++++++++. . +.+|+.+...+-||.+-+.+++.+
T Consensus 112 y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~~-~------~~lv~l~nPnNPTG~~~~~~~l~~--------------- 169 (351)
T PRK01688 112 YSVSAETIGVEIRTVPTLDNWQLDLPAIADNLD-G------VKVVYVCSPNNPTGNLINPQDLRT--------------- 169 (351)
T ss_pred HHHHHHHcCCEEEEeecCCCCCCCHHHHHHhcc-C------CcEEEEeCCCCCCCCCCCHHHHHH---------------
Confidence 777775544588899998889999999988772 2 456777788999999988887777
Q ss_pred CchHHHHHHc--CCCCCccchhhhHHhhhcCC
Q psy11047 394 TNFPNFILSY--FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 394 RrfR~iar~~--Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++.. +. ++.+|.||.-+
T Consensus 170 -----l~~~~~~~~-------~vivDEay~~f 189 (351)
T PRK01688 170 -----LLELTRGKA-------IVVADEAYIEF 189 (351)
T ss_pred -----HHHhCCCCc-------EEEEECchhhc
Confidence 55432 46 89999999654
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-06 Score=97.75 Aligned_cols=143 Identities=10% Similarity=-0.017 Sum_probs=101.5
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.|...+...++...+.+|+.+.+|.+-.. ....++|+||++|+..++.+. . .+|
T Consensus 52 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------~~~i~~t~G~~~al~~~~~~l----~------~~g--------- 105 (378)
T PRK07682 52 SYTANAGLLELRQEIAKYLKKRFAVSYDP-------NDEIIVTVGASQALDVAMRAI----I------NPG--------- 105 (378)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhCCCCCC-------CCcEEEeCChHHHHHHHHHHh----C------CCC---------
Confidence 34445567788888999998888874220 025899999999987665432 1 122
Q ss_pred eEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHh
Q psy11047 302 LVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCL 376 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eI 376 (943)
-.|++++-++.....++.+-+..++.++.+ +++.+|+++|++++... +.+++.+...+.+|.+-+ +++|
T Consensus 106 d~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~s~~~~~~l 179 (378)
T PRK07682 106 DEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAK------TKAILLCSPNNPTGAVLNKSELEEI 179 (378)
T ss_pred CEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcc------cEEEEEECCCCCcCcCcCHHHHHHH
Confidence 236667777777666664333467777764 36789999999988643 455666667888898754 7777
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+ +|++|++ ++.+|.+|+.+
T Consensus 180 ~~--------------------~~~~~~~-------~ii~De~y~~~ 199 (378)
T PRK07682 180 AV--------------------IVEKHDL-------IVLSDEIYAEL 199 (378)
T ss_pred HH--------------------HHHHcCc-------EEEEehhhhhc
Confidence 77 9999999 99999999876
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-06 Score=97.94 Aligned_cols=155 Identities=9% Similarity=-0.110 Sum_probs=105.1
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+.+.+...+......|...+...+++..+.+|+.+..|++-. ....++|+|+|+++..++.+. .
T Consensus 51 ~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~--------~~~i~it~G~~~al~~~~~~~----~---- 114 (398)
T PRK08363 51 MKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDIT--------PDDVRVTAAVTEALQLIFGAL----L---- 114 (398)
T ss_pred HHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCC--------hhhEEEeCCHHHHHHHHHHHh----C----
Confidence 334444444322223444556678888888888777665322 136789999999987776542 1
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEE-ecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCC
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYI-ESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLAL 364 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~V-p~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGT 364 (943)
.+| -.|++++-++.+...++. .|. .++.+ +.++ .+.+|.++|++.+... +.+|+.+...
T Consensus 115 --~~g---------d~Vl~~~p~y~~~~~~~~~~g~-~~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~ 176 (398)
T PRK08363 115 --DPG---------DEILIPGPSYPPYTGLVKFYGG-VPVEYRTIEEEGWQPDIDDIRKKITEK------TKAIAVINPN 176 (398)
T ss_pred --CCC---------CEEEEcCCCCcchHHHHHHcCC-EEEEeccccccCCcCCHHHHHhhCCcc------eEEEEEECCC
Confidence 122 246777778887777764 564 44445 4544 4579999999887543 4566777778
Q ss_pred Cccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 365 PAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 365 T~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+|.+-+ +++|.+ +|+++|+ |+.+|.+|+..
T Consensus 177 NPtG~~~~~~~~~~l~~--------------------~a~~~~~-------~li~Deay~~~ 211 (398)
T PRK08363 177 NPTGALYEKKTLKEILD--------------------IAGEHDL-------PVISDEIYDLM 211 (398)
T ss_pred CCCCcCcCHHHHHHHHH--------------------HHHHcCe-------EEEEhhhhhhh
Confidence 88998866 778888 9999999 99999999865
|
|
| >KOG0630|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.1e-09 Score=117.14 Aligned_cols=180 Identities=14% Similarity=0.137 Sum_probs=126.1
Q ss_pred CceEEEecCCCchHHHH-HH-HHCCc--cEEEEecC----CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc
Q psy11047 300 SRLVAYCSDQAHSSVEK-AG-LIGLV--NMRYIESD----DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD 371 (943)
Q Consensus 300 ~~~vV~~S~~aHySv~K-Aa-~LG~~--~v~~Vp~D----~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID 371 (943)
..+++|+|+..|.-... +| .+|.. .+..++-. -.|+||...+++.|++|..+|..|.++++..|++.+|.+|
T Consensus 230 aaPt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnD 309 (838)
T KOG0630|consen 230 AAPTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQND 309 (838)
T ss_pred cCceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchH
Confidence 45789999999987543 56 47753 34444422 2569999999999999999999999999999999999999
Q ss_pred cHHHhhhhccccccccccccccCchHHHHHHcC-CCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHH
Q psy11047 372 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYF-PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEK 450 (943)
Q Consensus 372 pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~G-l~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~k 450 (943)
.+-.|.+ +|+++. . |+|.-|.--+ ++ +|+-.+.
T Consensus 310 mi~kild--------------------i~eahakf-------WLHasGhaiA--AL-----------t~aepnn------ 343 (838)
T KOG0630|consen 310 MILKILD--------------------ICEAHAKF-------WLHASGHAIA--AL-----------TCAEPNN------ 343 (838)
T ss_pred HHHHHHH--------------------HHHHhhhe-------eEeeccchhh--he-----------eecCccc------
Confidence 9999999 999987 6 9998765222 22 0110000
Q ss_pred HHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcch--hhhhcccCccccccCCCCcccccCccccCCCCCc
Q psy11047 451 LLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGA--LHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF 528 (943)
Q Consensus 451 ll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~--L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf 528 (943)
..-+. .+..||++++.--||+++..-. |++-+ .|.........+-.+|+.
T Consensus 344 -----------il~HV------~eqldSMal~ialWLGiPSaPiV~LHRPl-----------eg~aaSafesdpi~rekL 395 (838)
T KOG0630|consen 344 -----------ILGHV------EEQLDSMALNIALWLGIPSAPIVLLHRPL-----------EGSAASAFESDPILREKL 395 (838)
T ss_pred -----------chhHH------HHHHhhccchhHHHhCCCCCceEEeeccc-----------ccccchhcccChHHHHhh
Confidence 01111 2467999999999999765322 11111 111111111122356789
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 529 RALKLWFVIRNFGIKGLQKHIREIF 553 (943)
Q Consensus 529 rALklW~tLr~~G~~Gl~~~I~~~l 553 (943)
.+|.+|.+++++|...+.++|+..+
T Consensus 396 daLp~Wta~q~LggKaIadmienAF 420 (838)
T KOG0630|consen 396 DALPLWTALQALGGKAIADMIENAF 420 (838)
T ss_pred ccchHHHHHHHhcccHHHHHHHHHH
Confidence 9999999999999999999999854
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-07 Score=107.64 Aligned_cols=137 Identities=12% Similarity=-0.040 Sum_probs=93.8
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 221 FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 221 ~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
..|..+|...++|..+ ++++|.+ ..++|++||.|+.++..+. + .||
T Consensus 72 d~Yagd~s~~~LE~~v----Ae~lG~e------------~aV~v~sGTaAl~ll~~l~----v------~pG-------- 117 (460)
T PRK13237 72 EAYAGSRNFYHLEETV----QEYYGFK------------HVVPTHQGRGAENLLSRIA----I------KPG-------- 117 (460)
T ss_pred hhhcCCCcHHHHHHHH----HHHHCCC------------eEEEeCCHHHHHHHHHHhC----C------CCc--------
Confidence 5689999999999866 6788886 3699999999987642210 1 122
Q ss_pred ceEEEecCCCchHHHHHH-HHCCccEEEEe----------cCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccc-
Q psy11047 301 RLVAYCSDQAHSSVEKAG-LIGLVNMRYIE----------SDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFL- 368 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp----------~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tG- 368 (943)
+ + ++...|++..++. ..++....-+. -..+|.||+++|+++|++... ..+.+|+++..++..|
T Consensus 118 d-~--Vp~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~--~~~~lV~a~itvn~~GG 192 (460)
T PRK13237 118 Q-Y--VPGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGA--ENIAYICLAVTVNLAGG 192 (460)
T ss_pred C-E--ECCccchHhhHHHHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccC--CccCceEEEEecccCCC
Confidence 2 2 2777888888875 33332222221 124799999999999985422 1244566666666663
Q ss_pred c---cccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 369 V---VDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 369 a---IDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
. ..++.+|.+ +|++||+ .+|.|||....
T Consensus 193 qpvs~~~m~~I~e--------------------lA~~~Gl-------~Vi~DaAra~g 223 (460)
T PRK13237 193 QPVSMANMRAVRE--------------------LCDKHGI-------KVFFDATRCVE 223 (460)
T ss_pred eeCCHHhHHHHHH--------------------HHHHcCC-------EEEEECcchhc
Confidence 2 356888888 9999999 99999997544
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-07 Score=106.76 Aligned_cols=127 Identities=10% Similarity=0.055 Sum_probs=91.1
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|...++|. .++++.|.+ ..++|+|||+|+..++.+. + .+| -.
T Consensus 62 ~~~pt~~~Le~----~lA~l~g~~------------~~l~~~sgt~Ai~~~l~al----~------~~G---------D~ 106 (394)
T PRK07050 62 HATPTSLALAQ----RLAEIEGGR------------HALLQPSGLAAISLVYFGL----V------KAG---------DD 106 (394)
T ss_pred CCCHHHHHHHH----HHHHHhCCC------------eEEEeccHHHHHHHHHHHH----h------CCC---------CE
Confidence 34566777776 457788753 4789999999998887653 1 123 24
Q ss_pred EEecCCCchHHHHH----HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKA----GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KA----a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++...|.+.... +...+.+++.++.+ +.++++++|+.+ +.+|+....++.+|.+.++++|++
T Consensus 107 Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~-----~~~~l~~~i~~~------tklV~le~p~Np~~~~~di~~I~~- 174 (394)
T PRK07050 107 VLIPDNAYGPNRDHGEWLARDFGITVRFYDPL-----IGAGIADLIQPN------TRLIWLEAPGSVTMEVPDVPAITA- 174 (394)
T ss_pred EEEecCCcccHHHHHHHHHHhcCeEEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCccHhhHHHHHH-
Confidence 67778788765542 22233466666542 456777777543 567777777778899999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|+||+..
T Consensus 175 -------------------ia~~~gi-------~livD~a~a~~ 192 (394)
T PRK07050 175 -------------------AARARGV-------VTAIDNTYSAG 192 (394)
T ss_pred -------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999765
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-06 Score=99.40 Aligned_cols=307 Identities=16% Similarity=0.173 Sum_probs=185.9
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.+|.+.++|+ ++++.+|... .+.+++||.|+.+||.+.- + .|| -.|
T Consensus 32 ~G~~v~~FE~----~~ae~~G~k~------------ava~~sgT~AL~laL~al~---i------g~G---------DeV 77 (374)
T COG0399 32 GGPFVRRFEQ----AFAEYLGVKY------------AVAVSSGTAALHLALLALA---I------GPG---------DEV 77 (374)
T ss_pred cChHHHHHHH----HHHHHhCCCe------------EEEecChHHHHHHHHHhcC---C------CCC---------CEE
Confidence 3899999998 6688999864 6899999999999987521 1 122 247
Q ss_pred EecCCCchHHHHHHHHCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 305 YCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 305 ~~S~~aHySv~KAa~LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+++..+-.+...+...-+...+.|.+| +.+.||++.++++|++. +..|+..+ ..|..-+++.|.+
T Consensus 78 I~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~------tKAIipVh---l~G~~~dm~~i~~----- 143 (374)
T COG0399 78 IVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPR------TKAIIPVH---LAGQPCDMDAIMA----- 143 (374)
T ss_pred EecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccC------CeEEEEeh---hccCCCCHHHHHH-----
Confidence 788888888877775444488899998 56999999999999986 44444432 3455557899998
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccc
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHC 463 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~ 463 (943)
+|++||+ ++--|+|++-+..+ + |
T Consensus 144 ---------------la~~~~l-------~vIEDaAqa~Ga~y---------------~----------------g---- 166 (374)
T COG0399 144 ---------------LAKRHGL-------PVIEDAAQAHGATY---------------K----------------G---- 166 (374)
T ss_pred ---------------HHHHcCC-------eEEEEcchhccCee---------------c----------------C----
Confidence 9999999 99999998766222 0 0
Q ss_pred cchhhhhcCCCCeeEEEEcCCCccCccCcchhh---hhcccCccccccCCCCcccc--cCccccCCCCCcchHHHHHHHH
Q psy11047 464 VPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH---RTFNVEPLYLRHENSGLAID--YMHWQIPLSKRFRALKLWFVIR 538 (943)
Q Consensus 464 p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~---~af~~~p~YL~~~~~g~~~d--~~~~tie~SRrfrALklW~tLr 538 (943)
..+-.+..+-+++|-++|.+.+-+++.+. ..+......+... |...+ ...+-...+=..|= =-...
T Consensus 167 ----k~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~h--G~~~~~~~~y~~~~~G~N~rm---~~iqA 237 (374)
T COG0399 167 ----KKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNH--GLSRDAVFKYLHEELGYNYRL---TEIQA 237 (374)
T ss_pred ----cccccccceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHh--CcCCCccccceeeecccccCH---HHHHH
Confidence 01222456789999999999833332220 0000011112111 11110 00000011111110 01233
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCC
Q psy11047 539 NFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDP 618 (943)
Q Consensus 539 ~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p 618 (943)
++|...|...=+. ++ + ..++++...+.|++.+
T Consensus 238 Aigl~QL~~l~~~-~~----------------------~-------------------------R~~~a~~Y~~~l~~~~ 269 (374)
T COG0399 238 AIGLAQLERLDEI-NE----------------------R-------------------------RREIAQIYAEALKGLP 269 (374)
T ss_pred HHHHHHHHHHHHH-HH----------------------H-------------------------HHHHHHHHHHHhhcCC
Confidence 4454444322221 10 0 3567888888999988
Q ss_pred CeEEecCCCcc-----EEEEEecCCChHHHHHHHHHhccCc---EEEeeccc---------------C-----CCcEEEE
Q psy11047 619 RFEIPAARHLG-----MVVIRLLGENILTEKLLKRLNSKGR---LHCVPASL---------------R-----IQGLGRA 670 (943)
Q Consensus 619 ~~eIl~~~~l~-----iV~Fr~~g~n~l~~~Ll~~L~~~G~---~~~s~t~~---------------~-----g~~~lR~ 670 (943)
++.+..++... +...+++.....-..+.+.|+++|. .|..|... . ....+.+
T Consensus 270 ~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~L 349 (374)
T COG0399 270 GITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSL 349 (374)
T ss_pred CccccCCCCCceeeeeeeEEEecCCCCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEc
Confidence 87776655433 2222333221224678888888753 33333111 0 1346777
Q ss_pred eecCCCCHHHHHHHHHHHHHHHH
Q psy11047 671 QNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 671 v~~~~tt~edId~ll~~I~~~~~ 693 (943)
=++|..+++|++++++.|+++..
T Consensus 350 P~~p~l~~~~~~~V~~~l~~~~~ 372 (374)
T COG0399 350 PLHPNLSEEDVDRVIEALKEVLG 372 (374)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhc
Confidence 78999999999999999988754
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-06 Score=98.69 Aligned_cols=112 Identities=9% Similarity=-0.089 Sum_probs=84.2
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcC
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLR 337 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD 337 (943)
..++|+|+|+++..++.+. + .+| + .|+++.-++.+....+..-+.+++.+|++. .+.+|
T Consensus 82 ~vi~t~G~~~al~~~~~~l----~------~~g--------d-~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d 142 (373)
T PRK07324 82 NILQTNGATGANFLVLYAL----V------EPG--------D-HVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPD 142 (373)
T ss_pred hEEEcCChHHHHHHHHHHh----C------CCC--------C-EEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCC
Confidence 5789999999998876642 1 122 2 356666677777766644334788888864 34689
Q ss_pred HHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhh
Q psy11047 338 GDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 414 (943)
Q Consensus 338 ~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwL 414 (943)
++++++.+..+ +.+++.+..++.+|.+-+ +++|++ +|++||+ |+
T Consensus 143 ~~~l~~~~~~~------~kli~i~~p~NPtG~~~~~~~l~~i~~--------------------~a~~~~~-------~i 189 (373)
T PRK07324 143 LDELRRLVRPN------TKLICINNANNPTGALMDRAYLEEIVE--------------------IARSVDA-------YV 189 (373)
T ss_pred HHHHHHhCCCC------CcEEEEeCCCCCCCCCCCHHHHHHHHH--------------------HHHHCCC-------EE
Confidence 99998877543 557778888899998877 888888 9999999 99
Q ss_pred hHHhhhcCC
Q psy11047 415 KFEALVLGD 423 (943)
Q Consensus 415 HVDAA~GG~ 423 (943)
++|.+|...
T Consensus 190 i~De~y~~l 198 (373)
T PRK07324 190 LSDEVYRPL 198 (373)
T ss_pred EEEcccccc
Confidence 999999765
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.4e-07 Score=103.72 Aligned_cols=330 Identities=14% Similarity=0.069 Sum_probs=195.0
Q ss_pred CCCCCCCCceeEEccCCCChHHHHHHHHHHHHhc------cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCC
Q psy11047 185 GITHWQSPYMHAYFPALNSYPSLLGDMLSDAINC------LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSP 258 (943)
Q Consensus 185 ~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~------n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~ 258 (943)
..+.|.+-.|+|.-.. |.++..+....-.. .......++.-.+||.+ ||+++|.+.
T Consensus 40 ~~~nf~SNdYLGLa~~----~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~----lA~f~g~e~---------- 101 (388)
T COG0156 40 KVLNFCSNDYLGLASH----PELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEE----LADFLGAEA---------- 101 (388)
T ss_pred eeEeeeccCcccccCC----HHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHH----HHHHhCCCc----------
Confidence 3456777778775433 34444433333221 11223445667788875 588888874
Q ss_pred CcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCH
Q psy11047 259 GGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRG 338 (943)
Q Consensus 259 ~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~ 338 (943)
.++-++|=.||+-.+-+ +. .++.+|+.-+..|.|+.+++.++...++...= .|+
T Consensus 102 --al~f~SGy~AN~~~i~~-----l~--------------~~~dli~~D~lnHASiidG~rls~a~~~~f~H-----nD~ 155 (388)
T COG0156 102 --ALLFSSGFVANLGLLSA-----LL--------------KKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-----NDL 155 (388)
T ss_pred --EEEEcccchhHHHHHHH-----hc--------------CCCcEEEEechhhhhHHHHHHhCCCcEEEecC-----CCH
Confidence 45556677888654432 11 12356888899999999999987767666653 578
Q ss_pred HHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHh
Q psy11047 339 DKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEA 418 (943)
Q Consensus 339 daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDA 418 (943)
++|++.|++....+..+.+|+.----...|.+-||.+|.+ ++++||. |+.||-
T Consensus 156 ~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~--------------------L~~ky~a-------~L~VDE 208 (388)
T COG0156 156 DHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVE--------------------LAEKYGA-------LLYVDE 208 (388)
T ss_pred HHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHH--------------------HHHHhCc-------EEEEEc
Confidence 9999999987654432344443333445699999999999 9999999 999999
Q ss_pred hhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCC--CeeEEEEcCCCccC-----ccC
Q psy11047 419 LVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLG--RAQNFTIVPSSLLR-----VKN 491 (943)
Q Consensus 419 A~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie--~ADSItiDpHK~L~-----vr~ 491 (943)
|++-+ .+ | ++|+=++..+ |++ ..|.+....-|.++ +-.
T Consensus 209 AHa~G-v~--------G---------------------~~GrG~~e~~-----g~~~~~vdi~~gTlsKAlGs~Gg~v~g 253 (388)
T COG0156 209 AHAVG-VL--------G---------------------PNGRGLAEHF-----GLEPEEVDIIVGTLGKALGSSGGYIAG 253 (388)
T ss_pred ccccc-cc--------C---------------------CCCccHHHHh-----CCCCccceEEEEEchhhhcccCceeeC
Confidence 99877 32 1 1111122221 443 45899999999999 222
Q ss_pred cchhhhhc-ccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy11047 492 SGALHRTF-NVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCL 570 (943)
Q Consensus 492 ~~~L~~af-~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~ 570 (943)
...+.+.+ ....+|++... + -+..+..+-.+++.+- -..+...+
T Consensus 254 ~~~~~d~L~~~ar~~ifSta-----------l---pP~~aaa~~~al~~l~--~~~~~r~~------------------- 298 (388)
T COG0156 254 SAALIDYLRNRARPFIFSTA-----------L---PPAVAAAALAALRILE--EGPERRER------------------- 298 (388)
T ss_pred cHHHHHHHHHhCCceeccCC-----------C---CHHHHHHHHHHHHHHH--hCHHHHHH-------------------
Confidence 22222211 11233433210 0 0111111111122110 00001111
Q ss_pred chhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHh
Q psy11047 571 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLN 650 (943)
Q Consensus 571 g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~ 650 (943)
..+++.+|...+.. .++.+ .+....|+.+.+.+ +.....+...|.
T Consensus 299 --------------------------------L~~~~~~~~~~~~~-~~~~~-~~s~s~I~pv~~gd-~~~a~~~s~~l~ 343 (388)
T COG0156 299 --------------------------------LQELAAFFRSLLKA-LGLVL-LPSESPIIPVILGD-EERALEASRALL 343 (388)
T ss_pred --------------------------------HHHHHHHHHHHHHh-cCCcc-CCCCCCeeeeEeCC-HHHHHHHHHHHH
Confidence 12344444433322 23333 35567778777654 345677777888
Q ss_pred ccCcEEEe----ecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 651 SKGRLHCV----PASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 651 ~~G~~~~s----~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
++|. ++. ||.-.+..-+|++++...|++||+++++.+.++
T Consensus 344 ~~Gi-~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 344 EEGI-YVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred HCCe-eEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 8764 554 555567788999999999999999999988764
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-08 Score=115.79 Aligned_cols=133 Identities=11% Similarity=0.044 Sum_probs=94.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
+..+..|+++|.+.. -.+|.|+|.+|..++.++- .|| -.|++...+|-|+
T Consensus 70 eAe~~aA~~fGAd~t-----------~flvnGsT~g~~a~i~a~~----------~~g---------d~VLv~RN~HkSv 119 (417)
T PF01276_consen 70 EAEELAARAFGADKT-----------FFLVNGSTSGNQAMIMALC----------RPG---------DKVLVDRNCHKSV 119 (417)
T ss_dssp HHHHHHHHHHTESEE-----------EEESSHHHHHHHHHHHHHT----------TTT---------CEEEEETT--HHH
T ss_pred HHHHHHHHhcCCCeE-----------EEEecCchHHHHHHHHHhc----------CCC---------CEEEEcCCcHHHH
Confidence 344567999999875 3678888888988877642 122 3588899999999
Q ss_pred HHHHHHCCccEEEEecC-C----CCCcCH-----HHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 315 EKAGLIGLVNMRYIESD-D----KLSLRG-----DKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D-~----~grmD~-----daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
..|+.|.+...++|++. + -+.+++ +.++++|++.+.... +.+|+.|.. |..|.+-++++|++
T Consensus 120 ~~alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~-~~~vvlt~P-TY~Gv~~di~~I~~------ 191 (417)
T PF01276_consen 120 YNALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKA-PRLVVLTSP-TYYGVCYDIKEIAE------ 191 (417)
T ss_dssp HHHHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHC-ESEEEEESS--TTSEEE-HHHHHH------
T ss_pred HHHHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccC-ceEEEEeCC-CCCeEEECHHHHHH------
Confidence 99998766666666553 2 224556 999999998765332 455666654 56699999999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcc
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 426 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~af 426 (943)
+|+++|+ .++||.|||+...|
T Consensus 192 --------------~~h~~~~-------~llvDEAhGah~~F 212 (417)
T PF01276_consen 192 --------------ICHKHGI-------PLLVDEAHGAHFGF 212 (417)
T ss_dssp --------------HHCCTEC-------EEEEE-TT-TTGGC
T ss_pred --------------HhcccCC-------EEEEEccccccccC
Confidence 9999999 99999999998554
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.7e-07 Score=101.89 Aligned_cols=126 Identities=10% Similarity=-0.042 Sum_probs=88.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+.+.+|+++|.+.+ ..++|+|+++++...+.+. . .+| ..|++++-++...
T Consensus 71 ~lr~~ia~~~~~~~~----------~i~~t~G~~~~l~~~~~~l----~------~~g---------d~vl~~~p~y~~~ 121 (367)
T PRK02731 71 ELKAALAEKFGVDPE----------RIILGNGSDEILELLARAY----L------GPG---------DEVIYSEHGFAVY 121 (367)
T ss_pred HHHHHHHHHhCcCHH----------HEEEcCCHHHHHHHHHHHh----c------CCC---------CEEEEecCCHHHH
Confidence 455667788887643 5789999998764433321 1 112 2356666666555
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++..-+.+++.++. +++.+|++++++.++.. +.+|+.+..++.+|.+-|++++.+
T Consensus 122 ~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~~~------~~~v~l~~p~nptG~~~~~~~l~~---------------- 178 (367)
T PRK02731 122 PIAAQAVGAKPVEVPA-KDYGHDLDAMLAAVTPR------TRLVFIANPNNPTGTYLPAEEVER---------------- 178 (367)
T ss_pred HHHHHHcCCeEEEecc-cCCCCCHHHHHHHhCCC------CcEEEEeCCCCCCCcCCCHHHHHH----------------
Confidence 5445433447888888 46789999999988632 566777788899999999999988
Q ss_pred chHHHHHHc--CCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSY--FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~--Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++.+ |+ |+.+|.+|..+
T Consensus 179 ----l~~~~~~~~-------~li~De~y~~~ 198 (367)
T PRK02731 179 ----FLAGVPPDV-------LVVLDEAYAEY 198 (367)
T ss_pred ----HHHhCCCCc-------EEEEECcHHHh
Confidence 77764 78 99999999765
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-07 Score=105.87 Aligned_cols=127 Identities=11% Similarity=-0.012 Sum_probs=91.7
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|...++|+.+ |+++|.+ ..++++||+.|+..++.+. + .+| -.
T Consensus 50 ~~np~~~~lE~~l----A~l~g~~------------~~l~~~sG~~Ai~~~l~~l----l------~~G---------D~ 94 (385)
T PRK08574 50 EENPTLRPLEEAL----AKLEGGV------------DALAFNSGMAAISTLFFSL----L------KAG---------DR 94 (385)
T ss_pred CCCccHHHHHHHH----HHHhCCC------------cEEEeCCHHHHHHHHHHHH----h------CCC---------CE
Confidence 4567888888754 7888864 3588899999998777642 1 122 24
Q ss_pred EEecCCCchHHHHHHH-HC--CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 304 AYCSDQAHSSVEKAGL-IG--LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 304 V~~S~~aHySv~KAa~-LG--~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
|+++...|.+....+. +. +.++..+. +|.++++++|++. .+.+|+....++.+|.+-|+++|++
T Consensus 95 Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~------~d~~~l~~~i~~~-----~tklV~ie~p~NPtG~v~dl~~I~~-- 161 (385)
T PRK08574 95 VVLPMEAYGTTLRLLKSLEKFGVKVVLAY------PSTEDIIEAIKEG-----RTKLVFIETMTNPTLKVIDVPEVAK-- 161 (385)
T ss_pred EEEcCCCchhHHHHHHHhhccCcEEEEEC------CCHHHHHHhcCcc-----CceEEEEECCCCCCCEecCHHHHHH--
Confidence 6778889988776652 21 22444443 3578888888651 1567777777888999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ |+.+|++|+..
T Consensus 162 ------------------la~~~gi-------~livD~t~a~~ 179 (385)
T PRK08574 162 ------------------AAKELGA-------ILVVDNTFATP 179 (385)
T ss_pred ------------------HHHHcCC-------EEEEECCCCcc
Confidence 9999999 99999999654
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-06 Score=95.53 Aligned_cols=129 Identities=11% Similarity=0.052 Sum_probs=93.1
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
+.++++|+.+|.+.. ...++|+|++++...++.+. . .+| ..|++++-++...
T Consensus 67 ~lr~~ia~~~~~~~~---------~~I~~t~G~~~~i~~~~~~~----~------~~g---------d~vlv~~P~y~~~ 118 (356)
T PRK04870 67 ALKAALRAAMGVPAG---------ADVLLGNGSDELIQLLALAC----A------KPG---------ATVLAPEPGFVMY 118 (356)
T ss_pred HHHHHHHHHhCcCCC---------CcEEEcCCHHHHHHHHHHHh----c------CCC---------CEEEECCCCHHHH
Confidence 456677888887542 14788888888875554321 1 122 2366677777777
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++.+.+.+++.++.++++.+|+++|++++.... +.+|+.+...+.+|.+-+.+++.+
T Consensus 119 ~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~-----~~~v~l~~p~NPtG~~~~~~~~~~---------------- 177 (356)
T PRK04870 119 RMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHR-----PALVFLAYPNNPTGNLFDDADVER---------------- 177 (356)
T ss_pred HHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCC-----CCEEEEcCCCCCCCCCCCHHHHHH----------------
Confidence 77775545588899998888999999999986431 456666777899999999888887
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++..+. |+++|.+|..+
T Consensus 178 ----i~~~~~~-------~ii~De~y~~~ 195 (356)
T PRK04870 178 ----IIEAAPG-------LVVVDEAYQPF 195 (356)
T ss_pred ----HHHHCCC-------EEEEECCchhh
Confidence 7766577 89999999754
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-07 Score=104.13 Aligned_cols=333 Identities=13% Similarity=0.057 Sum_probs=200.2
Q ss_pred ceeEEccCCCC-hHHHHHHHHHHHHhccCc------cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcC
Q psy11047 193 YMHAYFPALNS-YPSLLGDMLSDAINCLGF------TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQT 265 (943)
Q Consensus 193 rf~g~~~~~~s-~~silgd~L~~alN~n~~------~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTs 265 (943)
|-+-|-+++.. ++.++..+....+|-.+. ..--+|...++-.++.+.|.+|++.|+++ .-..++.
T Consensus 7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y--------~v~~l~G 78 (365)
T PLN02452 7 RVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNY--------EVLFLQG 78 (365)
T ss_pred ceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCc--------eEEEEeC
Confidence 44556666654 567888887777664421 12236777888889999999999998652 2345667
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH---HHHHHHHCCccEEEEecCC--CCCcCHHH
Q psy11047 266 TASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS---VEKAGLIGLVNMRYIESDD--KLSLRGDK 340 (943)
Q Consensus 266 GGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS---v~KAa~LG~~~v~~Vp~D~--~grmD~da 340 (943)
|||.+.=.+++. +++ +| +-+.|++ ..+++ .+.|..+|...+.....+. ....++++
T Consensus 79 sgt~~~ea~~~n----l~~------~~--------~~~l~~~-~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 139 (365)
T PLN02452 79 GASTQFAAIPLN----LCK------PG--------DKADFVV-TGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSE 139 (365)
T ss_pred ccHHHHHHHHHh----cCC------CC--------CeEEEEE-CCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHH
Confidence 777776444332 110 11 2234443 46666 3334467764443322111 11456665
Q ss_pred HHHHHHHhhccCCCcEEEEEecCCCcccc-cccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhh
Q psy11047 341 LIEAIERDKKKHLIPFFIFSGLALPAFLV-VDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL 419 (943)
Q Consensus 341 Le~aI~~d~~kG~~P~~VVaTaGTT~tGa-IDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA 419 (943)
+ +.+. .+-+|..|+..|.+|. +.|+.++++ + .+-||++
T Consensus 140 ~----~~~~----~~~~v~~~hnETstGv~~~~~~~i~~--------------------------~-------~lvVDa~ 178 (365)
T PLN02452 140 W----ELTP----DAKFVHICANETIHGVEFKDYPDVGN--------------------------V-------PLVADMS 178 (365)
T ss_pred c----CCCC----CCcEEEECCCCCCCcEecCcccccCC--------------------------C-------eEEEECC
Confidence 4 2221 2568999999999999 688877643 3 5789998
Q ss_pred hcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccC-------c
Q psy11047 420 VLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKN-------S 492 (943)
Q Consensus 420 ~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~-------~ 492 (943)
.... ...| ... ..+-+..+.||.++... +
T Consensus 179 Ss~g-~~pi---------------------------------dv~----------~~~v~~~saqK~lGP~Gl~~v~vr~ 214 (365)
T PLN02452 179 SNFL-SKPV---------------------------------DVS----------KYGVIYAGAQKNVGPSGVTIVIIRK 214 (365)
T ss_pred cccc-Cccc---------------------------------CHH----------HcCEEEEecccccCCCCeEEEEEcH
Confidence 7654 2111 011 11223369999998211 1
Q ss_pred chhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccch
Q psy11047 493 GALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGT 572 (943)
Q Consensus 493 ~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~ 572 (943)
..+.+.-...+. +.+|..+... -.+|.|....++.++.+.++++.+. .|+
T Consensus 215 ~~l~~~~~~~~~------------~~~~~~~~~~----~s~~~TP~v~~i~~l~~aL~~l~~~--------------gGl 264 (365)
T PLN02452 215 DLIGNARPITPG------------MLDYKIHAEN----DSLYNTPPCFGIYMCGLVFEDLLAQ--------------GGL 264 (365)
T ss_pred HHHhhcccCCCc------------hhhHHHHHhc----CCccCChhHHHHHHHHHHHHHHHHc--------------cCH
Confidence 111111011111 1222211000 0234477888888999999886430 145
Q ss_pred hhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEe-cC---CCccEEEEEecCCChHHHHHHHH
Q psy11047 573 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIP-AA---RHLGMVVIRLLGENILTEKLLKR 648 (943)
Q Consensus 573 ~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl-~~---~~l~iV~Fr~~g~n~l~~~Ll~~ 648 (943)
+.+.++ +.++++++.+.|.+.++|... .+ +...+|+|++++.+ +..++++.
T Consensus 265 ~~~~~r------------------------~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~~-~~~~f~~~ 319 (365)
T PLN02452 265 KAMEKR------------------------NIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGSE-LEAEFVKE 319 (365)
T ss_pred HHHHHH------------------------HHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCch-hHHHHHHH
Confidence 554443 678999999999998887222 11 23458999998764 78899999
Q ss_pred HhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 649 LNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 649 L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+.++|.+.+.....-+ + +|+++...++.++|+.+++.|++..++
T Consensus 320 ~~~~g~~~~~G~r~~g-g-~R~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 320 AAKAGMVQLKGHRSVG-G-MRASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred HHHCCCcccCCccccC-c-eEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 9999976544322222 2 999999999999999999999987543
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-06 Score=97.93 Aligned_cols=143 Identities=10% Similarity=-0.012 Sum_probs=100.0
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.|...+...++...+.+|+.+.+|++... ....++|+|||+|+..++.+- . .+|
T Consensus 56 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------~~~i~~t~G~~~al~~~~~~~----~------~~g--------- 109 (387)
T PRK07777 56 QYPPGPGIPELRAAIAAQRRRRYGLEYDP-------DTEVLVTVGATEAIAAAVLGL----V------EPG--------- 109 (387)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCcEEEeCCcHHHHHHHHHHh----c------CCC---------
Confidence 34444556778888888888888875320 024789999999987665421 1 122
Q ss_pred eEEEecCCCchHHHHHHHHCCccEEEEecCCC---CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc---cHHH
Q psy11047 302 LVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK---LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD---SYCC 375 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~---grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID---pL~e 375 (943)
-.|++..-.|.+...++.+-+..++.++.+++ +.+|+++|++.+... +.+|+.+...+.+|.+- ++++
T Consensus 110 d~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~ 183 (387)
T PRK07777 110 DEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPR------TRALIVNSPHNPTGTVLTAAELAA 183 (387)
T ss_pred CEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcc------cEEEEEcCCCCCCCccCCHHHHHH
Confidence 23555666777776666543447778887654 569999999988643 45566666667788764 4778
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|.+ +|++||+ ++.+|.+|+..
T Consensus 184 l~~--------------------~~~~~~~-------~li~De~y~~~ 204 (387)
T PRK07777 184 IAE--------------------LAVEHDL-------LVITDEVYEHL 204 (387)
T ss_pred HHH--------------------HHHhcCc-------EEEEeccchhc
Confidence 888 9999999 99999999765
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-06 Score=100.09 Aligned_cols=142 Identities=6% Similarity=-0.062 Sum_probs=99.3
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.|.......++...+.+++.+-.|++-. ....++|+|+|+|+.+++.+- . .+|
T Consensus 89 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~--------~~~v~it~G~~~al~l~~~~l----~------~~G--------- 141 (430)
T PLN00145 89 SYSTCVGLLPARRAIAEYLSRDLPYELS--------TDDIYLTAGCAQAIEIIMSVL----A------QPG--------- 141 (430)
T ss_pred CCCCCccCHHHHHHHHHHHhhccCCCCC--------hhhEEEeCCHHHHHHHHHHHh----c------CCC---------
Confidence 3444445567777777777666555422 136899999999987766542 1 122
Q ss_pred eEEEecCCCchHHHHHHHHCCccEEEEec--CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHh
Q psy11047 302 LVAYCSDQAHSSVEKAGLIGLVNMRYIES--DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCL 376 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa~LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eI 376 (943)
..|+++.-++.....++.+-+.+++.+++ ++++.+|+++|++.++.. +.+++.+..++-+|.+-| +++|
T Consensus 142 d~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~P~NPtG~v~~~~~l~~i 215 (430)
T PLN00145 142 ANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADEN------TVAMVIINPNNPCGSVYSYEHLAKI 215 (430)
T ss_pred CEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcC------ceEEEEeCCCCCCCCCCCHHHHHHH
Confidence 23566666666555566543447777765 346789999999887654 566777778899999987 6677
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+ +|++||+ |+++|.+|+.+
T Consensus 216 ~~--------------------~a~~~~i-------~ii~De~Y~~~ 235 (430)
T PLN00145 216 AE--------------------TARKLGI-------LVIADEVYDHL 235 (430)
T ss_pred HH--------------------HHHHcCC-------EEEEeccchhh
Confidence 77 8999999 99999999765
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-06 Score=96.70 Aligned_cols=158 Identities=7% Similarity=-0.034 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhcc-CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINCL-GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284 (943)
Q Consensus 206 silgd~L~~alN~n-~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~ 284 (943)
..+-+.+..++..+ ...|.......++...+.+|+.+..|++-. ....++|+|+|++...++.+. .
T Consensus 51 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~--------~~~i~~t~G~~~al~~~~~~l----~- 117 (409)
T PLN02656 51 HVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLS--------LDDVFITSGCTQAIDVALSML----A- 117 (409)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC--------cccEEEeCChHHHHHHHHHHH----h-
Confidence 34444455544433 233444445567777788888877665422 136889999999987666542 1
Q ss_pred hhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEec
Q psy11047 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGL 362 (943)
Q Consensus 285 ~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTa 362 (943)
.+| -.|++++-+|.....++.+-+.+++.++++ +.+.+|+++|++.++.. +.+++.+.
T Consensus 118 -----~~g---------d~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~ 177 (409)
T PLN02656 118 -----RPG---------ANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQN------TVALVIIN 177 (409)
T ss_pred -----CCC---------CeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccC------ceEEEEEC
Confidence 122 236667777776666665434478888874 34689999999887643 45677777
Q ss_pred CCCccccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 363 ALPAFLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 363 GTT~tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.++.+|.+ +++++|.+ +|++||+ |+++|.+|+.+
T Consensus 178 P~NPtG~~~s~~~~~~i~~--------------------~a~~~~~-------~ii~De~y~~~ 214 (409)
T PLN02656 178 PGNPCGNVYSYQHLKKIAE--------------------TAEKLKI-------LVIADEVYGHL 214 (409)
T ss_pred CCCCCCCCCCHHHHHHHHH--------------------HHHHcCC-------EEEEehhhhhc
Confidence 88899988 55788888 9999999 99999999866
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-06 Score=98.29 Aligned_cols=136 Identities=11% Similarity=0.031 Sum_probs=89.1
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
.+...++|+ .|++++|.+ ..+|+++||+||..||.+||..... ..|... ..+-++.
T Consensus 82 ~~~~~~l~~----~l~~~~~~~------------~~~~~~SGs~A~e~al~~a~~~~~~-----~~g~~~---~~~~vi~ 137 (401)
T PRK00854 82 NDQLAPLYE----ELAALTGSH------------KVLPMNSGAEAVETAIKAVRKWGYE-----VKGVPE---GQAEIIV 137 (401)
T ss_pred CHHHHHHHH----HHHhhCCCC------------EEEEeCCcHHHHHHHHHHHHHHHHh-----ccCCCC---CCceEEE
Confidence 344455555 456666653 4789999999999999999864211 012110 0123566
Q ss_pred ecCCCchHHHHHHHHCC------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc-
Q psy11047 306 CSDQAHSSVEKAGLIGL------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS- 372 (943)
Q Consensus 306 ~S~~aHySv~KAa~LG~------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp- 372 (943)
++..-|-+..-+..++. ..+..++- .|.++|++.|.+. +.+|+.......+|.+-|
T Consensus 138 ~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~i~~~------~~aii~e~~~~~~G~~~~~ 206 (401)
T PRK00854 138 CADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-----GDAEALEAAITPN------TVAFLVEPIQGEAGVIIPP 206 (401)
T ss_pred ECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhCCC------eEEEEEccccCCCCCcCCC
Confidence 66666766543332221 12333332 3789999888642 567777777777888766
Q ss_pred ---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 ---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 ---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++|.+ +|++||+ ++.+|.++.|.
T Consensus 207 ~~~l~~l~~--------------------l~~~~gi-------~lI~DEv~~g~ 233 (401)
T PRK00854 207 AGYFTRVRE--------------------LCTANNV-------TLILDEIQTGL 233 (401)
T ss_pred HHHHHHHHH--------------------HHHHcCC-------EEEEechhhCC
Confidence 899999 9999999 99999999865
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.8e-06 Score=96.06 Aligned_cols=180 Identities=9% Similarity=-0.024 Sum_probs=114.0
Q ss_pred CCCceeEEccCCCC------hHHHHHHHHHHHHhccC-ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEE
Q psy11047 190 QSPYMHAYFPALNS------YPSLLGDMLSDAINCLG-FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGV 262 (943)
Q Consensus 190 ~sPrf~g~~~~~~s------~~silgd~L~~alN~n~-~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gv 262 (943)
.++.+..+-.+.+. ++..+.+.+...++... ..|.......++-..+.+|+.+.++.+...- ..-+....+
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~--~~~~~~~i~ 108 (412)
T PTZ00433 31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLK--STIKKDNVV 108 (412)
T ss_pred CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhcccccccc--CCCChhhEE
Confidence 34455544444332 45566666666665432 2333222456777777777776554110000 000113689
Q ss_pred EcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHH
Q psy11047 263 LQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDK 340 (943)
Q Consensus 263 fTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~da 340 (943)
+|+|+++++..++.+.. .+| -.|+++.-+|.....++...+..+..++++ +++.+|+++
T Consensus 109 it~G~~~al~~~~~~~~----------~~g---------d~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~ 169 (412)
T PTZ00433 109 LCSGVSHAILMALTALC----------DEG---------DNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDE 169 (412)
T ss_pred EeCChHHHHHHHHHHhc----------CCC---------CEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHH
Confidence 99999999877765421 122 235666667777777775434578888875 357899999
Q ss_pred HHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHH
Q psy11047 341 LIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 417 (943)
Q Consensus 341 Le~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVD 417 (943)
|++.+... +.+|+.+...+-+|.+-+ +++|.+ +|++||+ |+++|
T Consensus 170 l~~~~~~~------~~~i~~~~p~NPtG~~~s~~~~~~l~~--------------------~a~~~~~-------~ii~D 216 (412)
T PTZ00433 170 IRRLVDDR------TKALIMTNPSNPCGSNFSRKHVEDIIR--------------------LCEELRL-------PLISD 216 (412)
T ss_pred HHHHhccC------ceEEEEeCCCCCCCcccCHHHHHHHHH--------------------HHHHcCC-------eEEEe
Confidence 99887653 456667777788997644 667777 8999999 99999
Q ss_pred hhhcCC
Q psy11047 418 ALVLGD 423 (943)
Q Consensus 418 AA~GG~ 423 (943)
.+|..+
T Consensus 217 e~y~~~ 222 (412)
T PTZ00433 217 EIYAGM 222 (412)
T ss_pred cccccc
Confidence 999865
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.1e-07 Score=100.01 Aligned_cols=314 Identities=15% Similarity=0.103 Sum_probs=180.3
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCc-EEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcC
Q psy11047 221 FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGG-GVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEIN 299 (943)
Q Consensus 221 ~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~-GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~ 299 (943)
..|..+....+++..+.+|+.+--|++.. .. .+++++|+.+++.++..... . .
T Consensus 38 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~---------~~~~i~~~~G~~~~~~~~~~~~~--~------~--------- 91 (363)
T PF00155_consen 38 LGYPPPQGYPELREAIADFLGRRYGVPVD---------PEANILVTSGAQAALFLLLRLLK--I------N--------- 91 (363)
T ss_dssp TSSTCTTHHHHHHHHHHHHHHHHHTHHTT---------GGEGEEEESHHHHHHHHHHHHHH--S------S---------
T ss_pred ccCCCchhhHHHHHHHHHHhhhccCcccc---------cceEEEEecccccchhhhhhccc--c------c---------
Confidence 34555556788888888888866565543 23 45666666666555543321 0 1
Q ss_pred CceEEEecCCCchHHHHHHHHCCccEEEEec--CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HH
Q psy11047 300 SRLVAYCSDQAHSSVEKAGLIGLVNMRYIES--DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YC 374 (943)
Q Consensus 300 ~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~ 374 (943)
+.-.|++.+-.|.....++..-+..++.++. ++++.+|+++|++.+++...++..+.+++.+-..+.+|.+-+ +.
T Consensus 92 ~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~ 171 (363)
T PF00155_consen 92 PGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELR 171 (363)
T ss_dssp TTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHH
T ss_pred ccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccccccccccccccccc
Confidence 1234777888999999988643335887874 378999999999999987666533566777777778998755 44
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHH
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKR 454 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~ 454 (943)
+|.+ +|++||+ |+-+|.+|+.+ .+. .. .
T Consensus 172 ~l~~--------------------~~~~~~~-------~ii~De~y~~~-~~~---~~-------------~-------- 199 (363)
T PF00155_consen 172 ELAE--------------------LAREYNI-------IIIVDEAYSDL-IFG---DP-------------D-------- 199 (363)
T ss_dssp HHHH--------------------HHHHTTS-------EEEEEETTTTG-BSS---SS-------------H--------
T ss_pred chhh--------------------hhccccc-------ceeeeeceecc-ccC---CC-------------c--------
Confidence 5555 6999999 99999999876 330 00 0
Q ss_pred hhccCcccccchhhhhcCCCCeeEEEEcCCCccCccC---cchhhhhcccCccccccCCCCcccccCccccCCCCCcchH
Q psy11047 455 LNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKN---SGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRAL 531 (943)
Q Consensus 455 l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~---~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrAL 531 (943)
.. .....+..-.. --+.-++.|.++... +... ..+..+..-. .... .-++ .++
T Consensus 200 -------~~-~~~~~~~~~~~-vi~~~S~SK~~g~~GlRvG~i~-----~~~~~~~~l~-----~~~~--~~~~---~~~ 255 (363)
T PF00155_consen 200 -------FG-PIRSLLDEDDN-VIVVGSLSKSFGLPGLRVGYIV-----APPELIERLR-----RFQR--SGLS---SSP 255 (363)
T ss_dssp -------TH-HHHGHHTTTST-EEEEEESTTTTTSGGGTEEEEE-----EEHHHHHHHH-----HHHH--HTTS---SHH
T ss_pred -------cC-ccccccccccc-ceeeeecccccccccccccccc-----chhhhhhhhh-----hccc--cccc---cch
Confidence 00 00111111111 367778889776322 2111 0011110000 0000 0000 222
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHH
Q psy11047 532 KLWFVIRNFGIKGL-QKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKF 610 (943)
Q Consensus 532 klW~tLr~~G~~Gl-~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l 610 (943)
...+....+...+. .+.+++..+ . -.+.++++
T Consensus 256 ~~~~~~~~l~~~~~~~~~~~~~~~-------------------~----------------------------l~~~~~~l 288 (363)
T PF00155_consen 256 MQAAAAAALSDPELVEKWLEELRE-------------------R----------------------------LRENRDLL 288 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------------H----------------------------HHHHHHHH
T ss_pred hhHHHHHhhhcccccccccccchh-------------------h----------------------------HHHHHHHH
Confidence 22333333333331 123333211 0 13445667
Q ss_pred HHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhcc-CcEEEeec-ccCCCcEEEEeecCCCCHHHHHHHHHHH
Q psy11047 611 EALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK-GRLHCVPA-SLRIQGLGRAQNFTRTTNDDITRDWNEI 688 (943)
Q Consensus 611 ~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~-G~~~~s~t-~~~g~~~lR~v~~~~tt~edId~ll~~I 688 (943)
.+.|.+. ++.+..++ .++++|.....+ ....+.+.|.++ |.. +.+. ....++++|+++ ...++++++++++.|
T Consensus 289 ~~~L~~~-~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~L~~~~gi~-v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 289 REALEEI-GITVLPPE-AGFFLWVRLDPN-DAEELAQELLEEYGIL-VRPGSYFGVPGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp HHHHHHT-TSEEEHHS-BSSEEEEEESHH-HHHHHHHHHHHHHTEE-EEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred HHHHHHh-hhheeecc-CccEEEEEcccc-hHHHHHHHHHHhCCEE-EEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence 7777666 88887655 777776543322 357888888887 754 4442 222377999977 777899999998765
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4e-06 Score=94.63 Aligned_cols=137 Identities=13% Similarity=-0.022 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec
Q psy11047 228 ACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307 (943)
Q Consensus 228 aateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S 307 (943)
...++...+.+|+.+..|++-.. ....++|+|+|+++..++.+- . .+| ..|+++
T Consensus 64 G~~~lr~~ia~~~~~~~g~~~~~-------~~~i~~t~G~~~al~~~~~~~----~------~~g---------d~Vlv~ 117 (387)
T PRK08912 64 GLPELRQAVAAHYARFQGLDLDP-------ETEVMVTSGATEALAAALLAL----V------EPG---------DEVVLF 117 (387)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCC-------cccEEEeCCcHHHHHHHHHHh----c------CCC---------CEEEEe
Confidence 35677778888888877874321 015789999999985554431 1 122 246677
Q ss_pred CCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccc
Q psy11047 308 DQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVK 383 (943)
Q Consensus 308 ~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~ 383 (943)
+-+|.....++..-+.+++.+++++ ++.+|.++|++.+... +.+++.+...+.+|.+-+ +++|.+
T Consensus 118 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~i~~----- 186 (387)
T PRK08912 118 QPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPR------TKAVLLNNPLNPAGKVFPREELALLAE----- 186 (387)
T ss_pred CCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCcc------ceEEEEeCCCCCcCcccCHHHHHHHHH-----
Confidence 7888888777754344788888864 6789999999988542 456677778889998866 666777
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++|++ |+.+|.+|+.+
T Consensus 187 ---------------~~~~~~~-------~ii~De~y~~~ 204 (387)
T PRK08912 187 ---------------FCQRHDA-------VAICDEVWEHV 204 (387)
T ss_pred ---------------HHHHCCe-------EEEEhhhhhhc
Confidence 9999999 99999999755
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-06 Score=95.52 Aligned_cols=136 Identities=11% Similarity=-0.064 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 232 LEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 232 LE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
...++.+++++++|.+ ..+++.|||+||..++.++|..... ++. .++-+++.+..-|
T Consensus 70 ~~~~l~~~la~~~g~~------------~~~~~~sg~~a~~~a~~~~~~~~~~------~~~-----~~~~vi~~~~~yh 126 (379)
T TIGR00707 70 PQEELAEKLVEHSGAD------------RVFFCNSGAEANEAALKLARKYTGD------KGK-----EKKKIIAFENSFH 126 (379)
T ss_pred HHHHHHHHHHhhCCCC------------EEEEeCCcHHHHHHHHHHHHHHhhc------cCC-----CCCeEEEECCCcC
Confidence 3445566778888864 3689999999999999887643210 010 0234555566667
Q ss_pred hHHHHHHHHCCccE---EEEecCCCCCc----CHHHHHHHHHHhhccCCCcEEEEEecCCCccccc----ccHHHhhhhc
Q psy11047 312 SSVEKAGLIGLVNM---RYIESDDKLSL----RGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV----DSYCCLGTAM 380 (943)
Q Consensus 312 ySv~KAa~LG~~~v---~~Vp~D~~grm----D~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI----DpL~eIa~~~ 380 (943)
.+..-+...+.... ...+...+... |+++|++.+... +.+|+.+.....+|.+ +++++|.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~p~~~~~g~~~~~~~~l~~i~~-- 198 (379)
T TIGR00707 127 GRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDE------TAAVIVEPIQGEGGVNPASAEFLKALRE-- 198 (379)
T ss_pred CccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhC------eeEEEEEccccCCCCccCCHHHHHHHHH--
Confidence 55555543332111 11222222222 799999988653 4455555544444543 23788888
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.+|.++
T Consensus 199 ------------------l~~~~~~-------~~i~De~~~~~ 216 (379)
T TIGR00707 199 ------------------ICKDKDA-------LLIFDEVQTGI 216 (379)
T ss_pred ------------------HHHHcCC-------EEEEeccccCC
Confidence 9999999 99999999765
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.8e-07 Score=107.30 Aligned_cols=131 Identities=13% Similarity=0.005 Sum_probs=91.5
Q ss_pred HHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHH
Q psy11047 237 MNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEK 316 (943)
Q Consensus 237 i~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~K 316 (943)
-+..|++||.+.. -.+|.|+|.+|..++.++- .+| -.|++...+|-|+..
T Consensus 180 q~~AA~~fgAd~t-----------yFlvNGTS~gn~a~i~a~~----------~~G---------d~VLvdRN~HKSv~h 229 (720)
T PRK13578 180 QKHAAKVFNADKT-----------YFVLNGTSASNKVVTNALL----------TPG---------DLVLFDRNNHKSNHH 229 (720)
T ss_pred HHHHHHHhCCCce-----------EEEeCChhHHHHHHHHHhc----------CCC---------CEEEeecccHHHHHH
Confidence 3456899999865 4688999999988777542 122 357889999999999
Q ss_pred H-HHHCCccEEEEecC--C---CCCcCH-----HHHHHHHHHh-hc--cCCCc-EEEEEecCCCcccccccHHHhhhhcc
Q psy11047 317 A-GLIGLVNMRYIESD--D---KLSLRG-----DKLIEAIERD-KK--KHLIP-FFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 317 A-a~LG~~~v~~Vp~D--~---~grmD~-----daLe~aI~~d-~~--kG~~P-~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
+ +.|.+...+++++. . -|-++. +.++++|++. .. +...| .+++.|.. |.-|.+-++++|++
T Consensus 230 gaLiLsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~--- 305 (720)
T PRK13578 230 GALIQAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVD--- 305 (720)
T ss_pred HHHHHcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHH---
Confidence 6 56655566666442 2 234554 4489999876 22 22345 56666665 55688889999999
Q ss_pred ccccccccccccCchHHH-HHHcCCCCCccchhhhHHhhhcCCCcc
Q psy11047 382 VKGLGFYKMKLQTNFPNF-ILSYFPKFQSVRLAQKFEALVLGDPRF 426 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~i-ar~~Gl~~~~l~lwLHVDAA~GG~~af 426 (943)
+ ++.++. +|||-|||+...|
T Consensus 306 -----------------~~~h~~~~--------llvDEAhgah~~F 326 (720)
T PRK13578 306 -----------------KIGHLCDY--------ILFDSAWVGYEQF 326 (720)
T ss_pred -----------------HhhccCCc--------EEEeCcchhhhcc
Confidence 6 566664 9999999998444
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.3e-06 Score=92.10 Aligned_cols=127 Identities=11% Similarity=-0.030 Sum_probs=90.5
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE 315 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~ 315 (943)
.++.+|++++.+.+ ..++|+|+++++..++.+. + .+| + .|++++-+.....
T Consensus 64 lr~~ia~~~~~~~~----------~i~it~G~~~~l~~~~~~l----~------~~g--------d-~Vlv~~p~y~~~~ 114 (351)
T PRK14807 64 LREELARYCSVVPT----------NIFVGNGSDEIIHLIMLAF----I------NKG--------D-VVIYPHPSFAMYS 114 (351)
T ss_pred HHHHHHHHhCCCcc----------cEEEecCHHHHHHHHHHHh----c------CCC--------C-EEEEeCCChHHHH
Confidence 44556666777543 5789999999876655431 1 122 2 2455555555455
Q ss_pred HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCc
Q psy11047 316 KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTN 395 (943)
Q Consensus 316 KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~Rr 395 (943)
.++...+.+++.++.++++.+|++++++++... .+.+|+.+...+-+|.+-+.+++.+
T Consensus 115 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~-----~~k~v~l~~p~NPtG~~~~~~~l~~----------------- 172 (351)
T PRK14807 115 VYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKY-----QPKLVFLCNPNNPTGSVIEREDIIK----------------- 172 (351)
T ss_pred HHHHHcCCeEEEeecCCCCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHH-----------------
Confidence 555544458889999888899999999988642 1456666778889999999999999
Q ss_pred hHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 396 FPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 396 fR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++++++. ++-+|.+|+.+
T Consensus 173 ---l~~~~~~-------~~ivDe~y~~~ 190 (351)
T PRK14807 173 ---IIEKSRG-------IVVVDEAYFEF 190 (351)
T ss_pred ---HHHhCCC-------EEEEeCcchhh
Confidence 8988887 88899999654
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-06 Score=99.69 Aligned_cols=129 Identities=15% Similarity=0.121 Sum_probs=88.2
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.....|....+|. .+|++.|.+ ..+++++|++|+..++.+. + .+| +
T Consensus 55 ~R~~~p~~~~Le~----~lA~l~g~~------------~~v~~~sG~~Ai~~~l~al----l------~pG--------D 100 (405)
T PRK08776 55 TRSGNPTRDLLGE----ALAELEGGA------------GGVITATGMGAINLVLNAL----L------QPG--------D 100 (405)
T ss_pred cCCCChHHHHHHH----HHHHHhCCC------------ceEEEcCHHHHHHHHHHHH----h------CCC--------C
Confidence 3445566677774 567888753 3588999998876555432 1 123 2
Q ss_pred eEEEecCCCchHHHHH----HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 302 LVAYCSDQAHSSVEKA----GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 302 ~vV~~S~~aHySv~KA----a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
.|+++...+...... +..+...+..++. .|.++|+++++.+ +.+|+.+.-++.+|.+.++++|.
T Consensus 101 -~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~-----~d~~~l~~~i~~~------tklV~l~~P~NPtG~v~dl~~I~ 168 (405)
T PRK08776 101 -TLVVPHDAYGGSWRLFNALAKKGHFALITADL-----TDPRSLADALAQS------PKLVLIETPSNPLLRITDLRFVI 168 (405)
T ss_pred -EEEEccCCchHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCcC------CeEEEEECCCCCCCccCCHHHHH
Confidence 355566666553322 2223445666654 3788998888643 56777777888899999999999
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|+++|+ ++-+|.+|+..
T Consensus 169 ~--------------------la~~~gi-------~vIvD~a~a~~ 187 (405)
T PRK08776 169 E--------------------AAHKVGA-------LTVVDNTFLSP 187 (405)
T ss_pred H--------------------HHHHcCC-------EEEEECCCccc
Confidence 9 9999999 99999999754
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.5e-07 Score=102.55 Aligned_cols=126 Identities=11% Similarity=0.055 Sum_probs=89.9
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....+|..+ |++.|.+ ..++|+||++|+..++.+- + .+| -.
T Consensus 47 ~gnPt~~~lE~~l----A~l~g~~------------~~~~~~sG~~Ai~~al~al----l------~~G---------D~ 91 (377)
T TIGR01324 47 RGTLTHFALQDAM----CELEGGA------------GCYLYPSGLAAVTNSILAF----V------KAG---------DH 91 (377)
T ss_pred CCCccHHHHHHHH----HHHhCCC------------cEEEECcHHHHHHHHHHHh----c------CCC---------CE
Confidence 3458888888865 6777753 4689999999998887642 1 122 23
Q ss_pred EEecCCCchHHHHHH-----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 304 AYCSDQAHSSVEKAG-----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 304 V~~S~~aHySv~KAa-----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
|++++..+.+....+ .+| .++..++.+ +.++++++|+++ +.+|+...-++.+|.+.|+++|++
T Consensus 92 Vl~~~~~y~~t~~~~~~~~~~~g-i~v~~~d~~-----~~e~l~~~i~~~------tklV~lesp~Np~g~~~dl~~I~~ 159 (377)
T TIGR01324 92 VLMVDSAYEPTRYFCDIVLKRMG-VDITYYDPL-----IGEDIATLIQPN------TKVLFLEAPSSITFEIQDIPAIAK 159 (377)
T ss_pred EEEcCCCcHHHHHHHHHHHHhcC-cEEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCCcHHHHHHHHH
Confidence 666776776554432 123 355555432 236777777643 678888888889999999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ |+-+|++|+..
T Consensus 160 --------------------la~~~g~-------~livD~t~a~g 177 (377)
T TIGR01324 160 --------------------AARNPGI-------VIMIDNTWAAG 177 (377)
T ss_pred --------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999765
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.7e-07 Score=103.14 Aligned_cols=128 Identities=8% Similarity=-0.041 Sum_probs=92.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
....|....+|.. +|++.|.+ ..++|+||+.|+..++.+. + .+| -
T Consensus 60 r~~~p~~~~Le~~----lA~leg~~------------~al~~~sG~~Ai~~al~~l----l------~~G---------D 104 (431)
T PRK08248 60 RIMNPTTDVFEKR----IAALEGGI------------GALAVSSGQAAITYSILNI----A------SAG---------D 104 (431)
T ss_pred CCCCchHHHHHHH----HHHHhCCC------------cEEEECCHHHHHHHHHHHH----h------CCC---------C
Confidence 3456777888875 57888753 4789999999998887642 1 122 2
Q ss_pred EEEecCCCchHHHHH----HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSSVEKA----GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~KA----a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
.|+++...|...... +..-+.+++.++. .|+++++++|+++ +.+|+.+..++.+|.+-|+++|++
T Consensus 105 ~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~-----~d~e~l~~ai~~~------tklV~l~sp~NPtG~v~di~~I~~ 173 (431)
T PRK08248 105 EIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP-----SDPENFEAAITDK------TKALFAETIGNPKGDVLDIEAVAA 173 (431)
T ss_pred EEEEccCchhhHHHHHHHHHHhCCEEEEEECC-----CCHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHH
Confidence 366777777554332 2222347777765 3789999888653 556777777888999999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|++++..
T Consensus 174 --------------------la~~~gi-------~vIvD~t~a~~ 191 (431)
T PRK08248 174 --------------------IAHEHGI-------PLIVDNTFASP 191 (431)
T ss_pred --------------------HHHHcCC-------EEEEeCCCCcc
Confidence 9999999 99999998743
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.6e-06 Score=96.62 Aligned_cols=158 Identities=11% Similarity=-0.014 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhh
Q psy11047 207 LLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKY 286 (943)
Q Consensus 207 ilgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~ 286 (943)
.+.+.+..++......|.......+|...+.+|+.+..|++-.. ....++|+|+|+|+..++.+- +
T Consensus 71 ~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-------~~~I~vt~G~~~al~~~~~~l----~--- 136 (413)
T PLN00175 71 FVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDP-------EKEVTVTSGCTEAIAATILGL----I--- 136 (413)
T ss_pred HHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCCEEEeCCHHHHHHHHHHHh----C---
Confidence 34555555554432344444456788888889998888865320 014789999999976655431 1
Q ss_pred cccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 287 ~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
.|| -.|++.+-.+.....++..-+.+++.|+.++ ++.+|+++|++.+... +.+|+.+...+
T Consensus 137 ---~~g---------d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~------~k~i~i~~p~N 198 (413)
T PLN00175 137 ---NPG---------DEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSK------TRAILINTPHN 198 (413)
T ss_pred ---CCC---------CEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcC------ceEEEecCCCC
Confidence 122 2355666677667666655445888998863 5789999999988643 45666677788
Q ss_pred ccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 366 AFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 366 ~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-+|.+-+ +++|.+ +|++||+ |+++|.+|...
T Consensus 199 PtG~~~s~~~l~~l~~--------------------~a~~~~~-------~ii~De~Y~~l 232 (413)
T PLN00175 199 PTGKMFTREELELIAS--------------------LCKENDV-------LAFTDEVYDKL 232 (413)
T ss_pred CCCcCCCHHHHHHHHH--------------------HHHHcCc-------EEEEecccCcc
Confidence 8998855 667777 9999999 99999999765
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.5e-07 Score=101.67 Aligned_cols=127 Identities=9% Similarity=-0.017 Sum_probs=91.0
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|...++|.. +|+++|.+ ..+++++|++|+..++.+. + .+| -.
T Consensus 61 ~~~p~~~~le~~----lA~l~g~~------------~~i~~ssG~~Ai~~~l~al----l------~~G---------D~ 105 (398)
T PRK08249 61 NTNPTVQAFEEK----VRILEGAE------------AATAFSTGMAAISNTLYTF----L------KPG---------DR 105 (398)
T ss_pred CCChHHHHHHHH----HHHHhCCC------------eEEEeCChHHHHHHHHHHh----c------CCC---------CE
Confidence 556778877764 57888864 3578888898887776542 1 122 24
Q ss_pred EEecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++...|.+..... ..-+.++..++. .|+++++++|+++ +.+|....-++.+|.+-|+++|.+
T Consensus 106 Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~-----~d~e~l~~~i~~~------tklV~ie~p~NPtg~v~dl~~I~~- 173 (398)
T PRK08249 106 VVSIKDTYGGTNKIFTEFLPRMGVDVTLCET-----GDHEQIEAEIAKG------CDLLYLETPTNPTLKIVDIERLAA- 173 (398)
T ss_pred EEEcCCchHHHHHHHHHHHhhCCeEEEEcCC-----CCHHHHHHhcCCC------CeEEEEECCCCCCCccCCHHHHHH-
Confidence 777888887754433 122234554442 5899999988653 567777777888999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|++|+..
T Consensus 174 -------------------la~~~gi-------~livD~t~a~~ 191 (398)
T PRK08249 174 -------------------AAKKVGA-------LVVVDNTFATP 191 (398)
T ss_pred -------------------HHHHcCC-------EEEEECCcCcc
Confidence 9999999 99999999854
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.4e-06 Score=94.44 Aligned_cols=112 Identities=12% Similarity=-0.020 Sum_probs=82.2
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcC
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLR 337 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD 337 (943)
..++|+|||+|+..++.+.. .+| -.|+++.-++.....++..-+..++.++.+ +++.+|
T Consensus 98 ~ii~t~G~t~al~~~~~~l~----------~~g---------d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d 158 (403)
T TIGR01265 98 DVVLTSGCSQAIEICIEALA----------NPG---------ANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEID 158 (403)
T ss_pred HEEEecChHHHHHHHHHHhC----------CCC---------CEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccC
Confidence 57899999999887766521 122 235666777776666664333467777663 467899
Q ss_pred HHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhh
Q psy11047 338 GDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 414 (943)
Q Consensus 338 ~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwL 414 (943)
++++++.+..+ +.+++.+..++.+|.+-+ +++|.+ +|+++|+ |+
T Consensus 159 ~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~~~~i~~--------------------~a~~~~~-------~i 205 (403)
T TIGR01265 159 LDGLEALADEK------TVAIVVINPSNPCGSVFSRDHLQKIAE--------------------VARKLGI-------PI 205 (403)
T ss_pred HHHHHHHhCcC------ccEEEEecCCCCCCCCCCHHHHHHHHH--------------------HHHHCCC-------EE
Confidence 99999887643 456667777888998854 778888 9999999 99
Q ss_pred hHHhhhcCC
Q psy11047 415 KFEALVLGD 423 (943)
Q Consensus 415 HVDAA~GG~ 423 (943)
++|.+|+.+
T Consensus 206 i~De~y~~~ 214 (403)
T TIGR01265 206 IADEIYGHM 214 (403)
T ss_pred EEEcccccc
Confidence 999999866
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-06 Score=96.58 Aligned_cols=127 Identities=13% Similarity=-0.005 Sum_probs=91.0
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+++++++.+|.+.+ ..++|+|+++++..++.+. . .+| + .|++++-++...
T Consensus 90 ~lr~~ia~~~~~~~~----------~I~~t~Ga~~~i~~~~~~~----~------~~g--------d-~Vlv~~P~y~~y 140 (380)
T PLN03026 90 RLRAALAEDSGLESE----------NILVGCGADELIDLLMRCV----L------DPG--------D-KIIDCPPTFGMY 140 (380)
T ss_pred HHHHHHHHHhCcChh----------hEEEcCCHHHHHHHHHHHh----c------CCC--------C-EEEEcCCChHHH
Confidence 466778888887654 5789999999986665431 1 122 2 355555554444
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
...+..-+.+++.++.++++.+|+++|++++... .+.+|+.+...+.+|.+-|.+++.+
T Consensus 141 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~-----~~~~v~l~~P~NPTG~~~~~~~l~~---------------- 199 (380)
T PLN03026 141 VFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETH-----KPKLLFLTSPNNPDGSIISDDDLLK---------------- 199 (380)
T ss_pred HHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhcc-----CCcEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 4455444457888888878899999999988422 1557777788999999999999998
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++.. + |+.+|.||..+
T Consensus 200 ----l~~~~-~-------~vi~DeaY~~~ 216 (380)
T PLN03026 200 ----ILELP-I-------LVVLDEAYIEF 216 (380)
T ss_pred ----HHhcC-C-------EEEEECcchhh
Confidence 88653 7 99999999754
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7e-07 Score=102.48 Aligned_cols=128 Identities=11% Similarity=0.039 Sum_probs=96.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
....|....+|..+ |+|-|.. ..+++++|+.|+..++++- + .+| -
T Consensus 58 R~~nPt~~~le~~l----a~LEg~~------------~a~~~~SGmaAi~~~~~~l----l------~~G---------D 102 (395)
T PRK08114 58 RRGTLTHFSLQEAM----CELEGGA------------GCALYPCGAAAVANAILAF----V------EQG---------D 102 (395)
T ss_pred CCCChhHHHHHHHH----HHHhCCC------------eEEEEhHHHHHHHHHHHHH----c------CCC---------C
Confidence 34678899999865 5665543 4688888999988777642 1 122 2
Q ss_pred EEEecCCCchHHHHHHH--H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSSVEKAGL--I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~--L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
.|+++...|.+..+.+. + -+.++..++. .|.++++++|+.+ +.+|....-++.+|.+-||++|++
T Consensus 103 ~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~-----~d~~~l~~~l~~~------TrlV~~EtpsNp~~~v~DI~~Ia~ 171 (395)
T PRK08114 103 HVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP-----LIGADIAKLIQPN------TKVVFLESPGSITMEVHDVPAIVA 171 (395)
T ss_pred EEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCCC------ceEEEEECCCCCCCEeecHHHHHH
Confidence 47788889888777652 2 2346777764 3678899988754 678899999999999999999999
Q ss_pred hccccccccccccccCchHHHHHHcC--CCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYF--PKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~G--l~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++| + .+.||++|+..
T Consensus 172 --------------------ia~~~g~g~-------~lvVDnT~a~p 191 (395)
T PRK08114 172 --------------------AVRSVNPDA-------VIMIDNTWAAG 191 (395)
T ss_pred --------------------HHHHhCCCC-------EEEEECCCccc
Confidence 999985 8 99999999765
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.5e-06 Score=94.02 Aligned_cols=140 Identities=14% Similarity=0.023 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec
Q psy11047 228 ACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307 (943)
Q Consensus 228 aateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S 307 (943)
...+++..+.+|+....|.+-. .....++|+|||+++..++.+. . .+| + .|++.
T Consensus 68 g~~~lr~~ia~~~~~~~~~~~~-------~~~~i~it~G~~~al~~~~~~~----~------~~g--------d-~vl~~ 121 (391)
T PRK07309 68 GLLELRQAAADFVKEKYNLDYA-------PENEILVTIGATEALSASLTAI----L------EPG--------D-KVLLP 121 (391)
T ss_pred CcHHHHHHHHHHHHHHhCCCCC-------CCCcEEEeCChHHHHHHHHHHh----c------CCC--------C-EEEEe
Confidence 3577888888888887776421 0125789999999987776542 1 122 2 35555
Q ss_pred CCCchHHHHHHHHCCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccc
Q psy11047 308 DQAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVK 383 (943)
Q Consensus 308 ~~aHySv~KAa~LG~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~ 383 (943)
.-++.....++..-+.+++.++.+++ +.+|+++|+++++.... .+.+++.+..++.+|.+-+ +++|.+
T Consensus 122 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~---~~~~i~l~~P~NPtG~~~s~~~~~~l~~----- 193 (391)
T PRK07309 122 APAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGD---KLKAVILNYPANPTGVTYSREQIKALAD----- 193 (391)
T ss_pred CCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCC---CeEEEEEECCCCCCCcCcCHHHHHHHHH-----
Confidence 66666666666543447888888654 57999999999875311 2556666777888898644 777777
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++|++ ++++|.+|+.+
T Consensus 194 ---------------~~~~~~~-------~ii~D~~y~~~ 211 (391)
T PRK07309 194 ---------------VLKKYDI-------FVISDEVYSEL 211 (391)
T ss_pred ---------------HHHHcCc-------EEEEEccccce
Confidence 9999999 99999999865
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.6e-07 Score=102.17 Aligned_cols=127 Identities=9% Similarity=0.044 Sum_probs=89.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
....|....+|+ .+|++.|.+. .+++++|+.|+..++. .++ +| -
T Consensus 50 r~~~p~~~~le~----~lA~l~g~~~------------~v~~~sG~~ai~~~l~-----~l~------~G---------d 93 (390)
T PRK08064 50 RSGNPTREALED----IIAELEGGTK------------GFAFASGMAAISTAFL-----LLS------KG---------D 93 (390)
T ss_pred CCCChhHHHHHH----HHHHHhCCCC------------eEEECCHHHHHHHHHH-----HhC------CC---------C
Confidence 345677887776 4578888753 4667777777654442 111 22 1
Q ss_pred EEEecCCCchHHHHH----HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSSVEKA----GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~KA----a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
.|+++...|.+.... +..-+.+++.++.+ |+++++++++++ +.+|+.+..++.+|.+-|+++|.+
T Consensus 94 ~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~~------tklV~l~~p~NptG~~~dl~~I~~ 162 (390)
T PRK08064 94 HVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT-----NLEEVAQNIKPN------TKLFYVETPSNPLLKVTDIRGVVK 162 (390)
T ss_pred EEEEccCccchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCcEeccHHHHHH
Confidence 366677777654432 22223477778763 688888888653 568888889999999999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.||+||+.+
T Consensus 163 --------------------la~~~g~-------~vvvD~a~~~~ 180 (390)
T PRK08064 163 --------------------LAKAIGC-------LTFVDNTFLTP 180 (390)
T ss_pred --------------------HHHHcCC-------EEEEECCCCcc
Confidence 9999999 99999998765
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.2e-06 Score=95.42 Aligned_cols=141 Identities=9% Similarity=-0.120 Sum_probs=97.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|...+...+++..+.+++.+..|..-. ....++|+|+++|+..++.+.. .+| -
T Consensus 63 Y~~~~G~~~lr~~ia~~~~~~~g~~~~--------~~~i~~t~G~~~al~~~~~~l~----------~~g---------d 115 (386)
T PRK07550 63 YGPVEGLPELREAYAAHYSRLYGAAIS--------PEQVHITSGCNQAFWAAMVTLA----------GAG---------D 115 (386)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCC--------cceEEEecCcHHHHHHHHHHhc----------CCC---------C
Confidence 333345778888888888888776432 1367899999999766654421 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLG 377 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa 377 (943)
.|++++-++.....++...+.+++.++.++ .+.+|.++|++.++.. +.+|+.+..++-+|.+-+ +++|.
T Consensus 116 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~i~ 189 (386)
T PRK07550 116 EVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPR------TRAIALVTPNNPTGVVYPPELLHELY 189 (386)
T ss_pred EEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhccc------CcEEEEeCCCCCCCcccCHHHHHHHH
Confidence 366666555444444444445888898863 4568999999988753 445555556777888755 67788
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|++||+ ++++|.+|+.+
T Consensus 190 ~--------------------~~~~~~~-------~iI~Dd~y~~~ 208 (386)
T PRK07550 190 D--------------------LARRHGI-------ALILDETYRDF 208 (386)
T ss_pred H--------------------HHHHcCe-------EEEEeccchhh
Confidence 7 9999999 99999999865
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.7e-07 Score=101.65 Aligned_cols=126 Identities=11% Similarity=0.059 Sum_probs=88.1
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|....||..+ |++.|.. ..++++||++|+..++.+- + .+| -.|
T Consensus 59 ~npt~~~Le~~i----A~le~~~------------~~~~~~sG~~Ai~~~l~al----l------~~G---------D~V 103 (394)
T PRK09028 59 GTPTHFAFQAAI----VELEGGA------------GTALYPSGAAAISNALLSF----L------KAG---------DHL 103 (394)
T ss_pred CCchHHHHHHHH----HHHhCCC------------cEEEECCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 356667777654 5555432 4689999999988777542 1 123 236
Q ss_pred EecCCCchHHHHHH--HH--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG--LI--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa--~L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
++++..+.+....+ .+ -+.++..++.+ +.+.++++|+++ +.+|+.+.-++.+|.+.|+++|++
T Consensus 104 vv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~-----~~e~l~~~l~~~------TklV~lespsNPtg~v~dl~~I~~-- 170 (394)
T PRK09028 104 LMVDSCYEPTRDLCDKILKGFGIETTYYDPM-----IGEGIRELIRPN------TKVLFLESPGSITMEVQDVPTLSR-- 170 (394)
T ss_pred EEECCCcHHHHHHHHHhhhhcceEEEEECCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCcHHHHHHHHH--
Confidence 66676776665533 12 12355555432 356777777543 678888889999999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ |+-||.+|+..
T Consensus 171 ------------------la~~~g~-------~lvvD~t~a~p 188 (394)
T PRK09028 171 ------------------IAHEHDI-------VVMLDNTWASP 188 (394)
T ss_pred ------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999865
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-06 Score=100.09 Aligned_cols=127 Identities=12% Similarity=0.099 Sum_probs=90.3
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....+|. ++|++.|.+ ..++|+||++|+..++.+- + .+| -.
T Consensus 49 ~~~pt~~~L~~----~lA~l~g~~------------~~i~~~sg~~Ai~~~l~~l----~------~~G---------D~ 93 (386)
T PRK08045 49 RGNPTRDVVQR----ALAELEGGA------------GAVLTNTGMSAIHLVTTVF----L------KPG---------DL 93 (386)
T ss_pred CCCccHHHHHH----HHHHHhCCC------------eEEEECCHHHHHHHHHHHH----c------CCC---------CE
Confidence 34566666665 567787742 4789999999887766531 1 122 24
Q ss_pred EEecCCCchHHHHHH-H---HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAG-L---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa-~---LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|++++..|.+..... . .+...+..++ ..|.++++++++++ +.+|..+..++.+|.+-|+++|.+
T Consensus 94 Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd-----~~d~e~l~~~l~~~------tklV~l~sP~NPtG~v~di~~I~~- 161 (386)
T PRK08045 94 LVAPHDCYGGSYRLFDSLAKRGCYRVLFVD-----QGDEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICH- 161 (386)
T ss_pred EEEcCCCcHHHHHHHHHHHhhCCeEEEEeC-----CCCHHHHHHhcccC------CeEEEEECCCCCCCEecCHHHHHH-
Confidence 667777777544432 2 2444555553 36889999888653 567777888889999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++-+|.+|+.+
T Consensus 162 -------------------ia~~~g~-------~vivDeay~~~ 179 (386)
T PRK08045 162 -------------------LAREAGA-------VSVVDNTFLSP 179 (386)
T ss_pred -------------------HHHHcCC-------EEEEECCCCcc
Confidence 9999999 99999999765
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-06 Score=101.88 Aligned_cols=126 Identities=10% Similarity=0.004 Sum_probs=91.5
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|....+|. .+|++.|.+ ..+++++|+.|+..++.+. + .+| -.|
T Consensus 61 ~~p~~~~le~----~lA~l~g~~------------~al~~~SG~~Ai~~al~al----l------~pG---------d~V 105 (427)
T PRK05994 61 TNPTNAVLEE----RVAALEGGT------------AALAVASGHAAQFLVFHTL----L------QPG---------DEF 105 (427)
T ss_pred CCccHHHHHH----HHHHHhCCC------------cEEEEcCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 3566777776 457787764 3689999999998777653 1 122 236
Q ss_pred EecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+..+.. ..-+..++.++++ |+++++++|+++ +.+|+...-++.+|.+-|+++|.+
T Consensus 106 Iv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~~------tklV~vesp~NptG~v~dl~~I~~-- 172 (427)
T PRK05994 106 IAARKLYGGSINQFGHAFKSFGWQVRWADAD-----DPASFERAITPR------TKAIFIESIANPGGTVTDIAAIAE-- 172 (427)
T ss_pred EEecCcchhHHHHHHHHHHhcCcEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHH--
Confidence 67777887654432 1123366677653 788999888653 567777788888999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|.+++..
T Consensus 173 ------------------la~~~gi-------~livD~a~a~~ 190 (427)
T PRK05994 173 ------------------VAHRAGL-------PLIVDNTLASP 190 (427)
T ss_pred ------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999754
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.7e-07 Score=101.68 Aligned_cols=125 Identities=9% Similarity=0.010 Sum_probs=88.3
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|. .+++++|.+ ..+++++|+.|+..++. .+ .+| -.|
T Consensus 45 ~~p~~~~le~----~la~l~g~~------------~~l~~~sG~~al~~~l~-----ll------~~G---------d~V 88 (378)
T TIGR01329 45 GNPTRTALES----LLAKLDKAD------------RAFAFSSGMAALDVITR-----LL------NNG---------DEI 88 (378)
T ss_pred CChHHHHHHH----HHHHHhCCC------------cEEEECCHHHHHHHHHH-----Hh------CCC---------CEE
Confidence 3455555555 668888874 35777888876543221 12 122 246
Q ss_pred EecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+..+.. ...+.+++.++.+ |+++++++|+.+ +.+|+.+.-++.+|.+-|+++|++
T Consensus 89 l~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~~~le~~i~~~------tklv~le~psnptg~v~dl~~I~~-- 155 (378)
T TIGR01329 89 IAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT-----DLDKVKAALGPK------TKLVLLESPTNPLQKIVDIRKISE-- 155 (378)
T ss_pred EEcCCCchHHHHHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCeeecHHHHHH--
Confidence 77788888766543 1223467777763 789999888643 668888888889999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.||++++..
T Consensus 156 ------------------la~~~g~-------~vivD~a~~~~ 173 (378)
T TIGR01329 156 ------------------MAHAQNA-------LVVVDNTMMSP 173 (378)
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999998654
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.5e-06 Score=91.81 Aligned_cols=132 Identities=8% Similarity=0.020 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+.+.+++++|++ ...|+++||+||..|+..+|.+...+ .|+. ..++-++.+...-|-+.
T Consensus 77 ~~~~~l~~~~~~~------------~~~~~~SGs~A~e~al~~~~~~~~~~-----~~~~---~~~~~vl~~~~~~Hg~~ 136 (400)
T PTZ00125 77 LAEKYITDLFGYD------------KVLPMNSGAEAGETALKFARKWGYEV-----KGIP---ENQAKIIFCNGNFSGRT 136 (400)
T ss_pred HHHHHHHhCCCCC------------EEEEeCCcHHHHHHHHHHHHHHHHhc-----cCCC---CCCCeEEEECCCcCCcc
Confidence 3444556666653 36899999999999999998643211 1110 01234556666667666
Q ss_pred HHHHHHCCc------------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhhh
Q psy11047 315 EKAGLIGLV------------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLGT 378 (943)
Q Consensus 315 ~KAa~LG~~------------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~ 378 (943)
..++.++.. .+..++. .|+++|++.++.. .+.+|+..-..+.+|.+-| +++|.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~-----~~~~v~~ep~~~~~G~~~~~~~~l~~l~~ 206 (400)
T PTZ00125 137 IGACSASTDPKCYNNFGPFVPGFELVDY-----NDVEALEKLLQDP-----NVAAFIVEPIQGEAGVIVPDDGYLKQVYE 206 (400)
T ss_pred HHHHhhcCCcchhccCCCCCCCceEeCC-----CCHHHHHHHhCCC-----CeEEEEEcCccCCCCCccCCHHHHHHHHH
Confidence 555533221 1122222 3799999988621 2556665444566787766 899999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.++.+.
T Consensus 207 --------------------l~~~~~~-------lli~Dev~~g~ 224 (400)
T PTZ00125 207 --------------------LCKKYNV-------LLIVDEIQTGL 224 (400)
T ss_pred --------------------HHHHcCC-------EEEEeccccCC
Confidence 9999999 99999999764
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.4e-06 Score=95.47 Aligned_cols=331 Identities=10% Similarity=0.003 Sum_probs=180.5
Q ss_pred hHHHHHHHHHHHHhccCccccCChh---HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPA---CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRT 280 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPa---ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~ 280 (943)
.|.+. +....++...+.....|+. .+.+..++=+.||+++|.++ .++.++|..||+-++.+--.
T Consensus 118 ~p~v~-~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~------------all~sSGy~AN~~~i~aL~~ 184 (476)
T PLN02955 118 HPTIS-NAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKED------------CLVCPTGFAANMAAMVAIGS 184 (476)
T ss_pred CHHHH-HHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCc------------EEEECChHHHHHHHHHHHhh
Confidence 44444 3334444555443333332 22233334456789999864 58899999999877654200
Q ss_pred HHHHhhcc-cCCCchhhhcCCceEEEecCCCchHHHHHHHHC----CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCc
Q psy11047 281 EAIRKYQQ-SHPELEHAEINSRLVAYCSDQAHSSVEKAGLIG----LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIP 355 (943)
Q Consensus 281 ~~l~~~~~-~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG----~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P 355 (943)
...-... ..+. .....+||+-...|.|+..++.+. ...+...+= -|+++|++.|+....+ .
T Consensus 185 -~~~~~~~~~~~~-----~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-----ND~~~Le~~L~~~~~~---~ 250 (476)
T PLN02955 185 -VASLLAASGKPL-----KNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-----CDMYHLNSLLSSCKMK---R 250 (476)
T ss_pred -cccccccccccc-----CCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-----CCHHHHHHHHHhCCCC---c
Confidence 0000000 0000 013456788889999999999764 344555543 3699999999775432 3
Q ss_pred EEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccc
Q psy11047 356 FFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLG 435 (943)
Q Consensus 356 ~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg 435 (943)
.+|+.----...|.+-|+.+|.+ +|++||. ++.||-|++.+ .+ |
T Consensus 251 ~~Vv~EgV~SmdGdiapL~eL~~--------------------L~~~~ga-------~LiVDEAH~~G-v~--------G 294 (476)
T PLN02955 251 KVVVTDSLFSMDGDFAPMEELSQ--------------------LRKKYGF-------LLVIDDAHGTF-VC--------G 294 (476)
T ss_pred eEEEEeCCCCCCCCcCCHHHHHH--------------------HHHHcCc-------EEEEcccccCc-ee--------c
Confidence 34443333455688999999999 9999999 99999999876 32 1
Q ss_pred eeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC-CCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcc
Q psy11047 436 MVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL-GRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLA 514 (943)
Q Consensus 436 ~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi-e~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~ 514 (943)
.+|+=.+..+ |+ ...|-++...-|.++....-.+-+. .-..||......
T Consensus 295 ---------------------~~G~G~~e~~-----g~~~di~ii~~TLsKA~G~~GGfi~gs~--~~~~~l~~~~~~-- 344 (476)
T PLN02955 295 ---------------------ENGGGVAEEF-----NCEADVDLCVGTLSKAAGCHGGFIACSK--KWKQLIQSRGRS-- 344 (476)
T ss_pred ---------------------CCCCcHHHHh-----CCCCCCcEEEEeCccchhccCceeecHH--HHHHHHHHhCCC--
Confidence 0111111111 22 4678899999999883332211000 001233211100
Q ss_pred cccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccc
Q psy11047 515 IDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFI 594 (943)
Q Consensus 515 ~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~ 594 (943)
..|+-..+ ..-+...-.++..+=.+ ....++
T Consensus 345 ---~ifStalp-p~~aaa~laal~l~~~~--~~~r~~------------------------------------------- 375 (476)
T PLN02955 345 ---FIFSTAIP-VPMAAAAYAAVVVARKE--KWRRKA------------------------------------------- 375 (476)
T ss_pred ---Ceeccccc-HHHHHHHHHHHHHHhcC--HHHHHH-------------------------------------------
Confidence 00000000 00000000011111000 000000
Q ss_pred cccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEe----ecccCCCcEEEE
Q psy11047 595 LSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV----PASLRIQGLGRA 670 (943)
Q Consensus 595 ~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s----~t~~~g~~~lR~ 670 (943)
-.++.++|.+.+ ++++ ..+|+.+.+. .+.....+.++|.++|. +++ |+.-.+..-+|+
T Consensus 376 --------L~~n~~~fr~~~----G~~~----~sPI~pI~ig-~~~~a~~~~~~L~~~Gi-~v~~i~yPtVP~g~~rLRi 437 (476)
T PLN02955 376 --------IWERVKEFKALS----GVDI----SSPIISLVVG-NQEKALKASRYLLKSGF-HVMAIRPPTVPPNSCRLRV 437 (476)
T ss_pred --------HHHHHHHHHHhc----CCCC----CCCEEEEEeC-CHHHHHHHHHHHHHCCC-EEEEECCCCCCCCCceEEE
Confidence 123455555531 4433 3677777664 34446678889999996 444 344456677999
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 671 QNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 671 v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+++...|++||+++++.|.++...
T Consensus 438 ~lsA~Ht~edId~lv~~L~~~~~~ 461 (476)
T PLN02955 438 TLSAAHTTEDVKKLITALSSCLDF 461 (476)
T ss_pred eeCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999877443
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.7e-06 Score=93.60 Aligned_cols=129 Identities=12% Similarity=0.035 Sum_probs=96.2
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|. ++++++|.+ ..++|+|||+|+..++.+.. + .|| -.|
T Consensus 29 ~g~~~~~~e~----~la~~~g~~------------~~v~~~sgt~aL~~~l~al~---~------~pG---------d~V 74 (376)
T TIGR02379 29 DGPFSRRCET----WLENRTGTK------------KALLTPSCTAALEMAALLLD---I------QPG---------DEV 74 (376)
T ss_pred CcHHHHHHHH----HHHHHhCCC------------eEEEeCCHHHHHHHHHHHcC---C------CCc---------CEE
Confidence 3566666665 567777763 47899999999776655320 0 122 247
Q ss_pred EecCCCchHHHHHHHHCCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 305 YCSDQAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 305 ~~S~~aHySv~KAa~LG~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+++..+|.+...++..-+..++.++++.+ +.+|+++++++++.. +.+|+.+ ..+|..-|+++|.+
T Consensus 75 iv~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~~------tk~Iip~---~~~G~~~d~~~I~~----- 140 (376)
T TIGR02379 75 IMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITHR------TKAIVPV---HYAGVACDMDTIMA----- 140 (376)
T ss_pred EECCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcC------ceEEEEe---CCCCCccCHHHHHH-----
Confidence 78899999998888544458899998865 689999999988753 4556544 35688888999999
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++..|+|++.+
T Consensus 141 ---------------la~~~~i-------~vIeDaa~~~g 158 (376)
T TIGR02379 141 ---------------LANKHQL-------FVIEDAAQGVM 158 (376)
T ss_pred ---------------HHHHCCC-------EEEEECccccC
Confidence 9999999 99999998755
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-06 Score=99.65 Aligned_cols=127 Identities=13% Similarity=0.016 Sum_probs=90.8
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....+|..+ +++.|... .+.+++|+.|+..++.+. + .+| -.
T Consensus 44 ~g~p~~~~lE~~l----a~leg~~~------------~v~~ssG~~Ai~~~l~al----l------~~G---------d~ 88 (397)
T PRK05939 44 QGTPTTAALEAKI----TKMEGGVG------------TVCFATGMAAIAAVFLTL----L------RAG---------DH 88 (397)
T ss_pred CCCHHHHHHHHHH----HHHhCCCe------------EEEeCCHHHHHHHHHHHH----c------CCC---------CE
Confidence 3568889999865 67777642 467777888887666532 1 122 23
Q ss_pred EEecCCCch---HHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 304 AYCSDQAHS---SVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 304 V~~S~~aHy---Sv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
|++++..|. ++.+++...+..++.++++ |.++++++|+.+ +.+|+...-++.+|.+.|+++|++
T Consensus 89 Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~-----d~e~l~~~l~~~------tklV~vesp~NptG~v~dl~~I~~-- 155 (397)
T PRK05939 89 LVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT-----DVQNVAAAIRPN------TRMVFVETIANPGTQVADLAGIGA-- 155 (397)
T ss_pred EEECCCccccHHHHHHHHHhcCCEEEEECCC-----CHHHHHHhCCCC------CeEEEEECCCCCCCCHHhHHHHHH--
Confidence 556666543 4444443223477777763 789999988653 667888888889999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|++|+..
T Consensus 156 ------------------la~~~gi-------~livD~t~a~~ 173 (397)
T PRK05939 156 ------------------LCRERGL-------LYVVDNTMTSP 173 (397)
T ss_pred ------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999754
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-06 Score=96.62 Aligned_cols=126 Identities=12% Similarity=0.033 Sum_probs=89.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++++++.+|.+.+ ..++|+|++++...++.+. . .+| -.|++++-+....
T Consensus 68 ~lr~~ia~~~~~~~~----------~i~~t~G~~~~l~~~~~~~----~------~~g---------d~v~~~~p~y~~~ 118 (359)
T PRK03158 68 ELRTKVAKHLGVDEE----------QLLFGAGLDEVIQMISRAL----L------NPG---------TNTVMAEPTFSQY 118 (359)
T ss_pred HHHHHHHHHhCCCHH----------HEEECCCHHHHHHHHHHHH----h------CCC---------CEEEEcCCCHHHH
Confidence 355667777787543 5789999999875443321 1 122 2355666566666
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++..-+.+++.+|++ ++.+|++++++.++.. +.+++.+...+.+|.+-|.+++.+
T Consensus 119 ~~~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~l~~---------------- 175 (359)
T PRK03158 119 RHNAIIEGAEVREVPLK-DGGHDLEAMLKAIDEQ------TKIVWICNPNNPTGTYVNHEELLS---------------- 175 (359)
T ss_pred HHHHHHcCCeEEEEecC-CCCcCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 66665444588999987 6889999998877542 445666677899999999998888
Q ss_pred chHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++. +|+ ++.+|.+|+.+
T Consensus 176 ----~~~~~~~~~-------~ii~De~y~~~ 195 (359)
T PRK03158 176 ----FLESVPSHV-------LVVLDEAYYEY 195 (359)
T ss_pred ----HHHhCCCCc-------EEEEECchHhh
Confidence 7766 578 99999999765
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.8e-06 Score=94.16 Aligned_cols=129 Identities=11% Similarity=-0.031 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
.+....++.+.|++++|. + .+++++|++||..++..++.... .++ ...+|+...
T Consensus 89 ~~~~~~~l~~~la~~~~~-~------------~~~~~sG~~a~~~ai~~~~~~~~------~~~-------~~~vi~~~~ 142 (402)
T PRK07505 89 RSQILKDLEEALSELFGA-S------------VLTFTSCSAAHLGILPLLASGHL------TGG-------VPPHMVFDK 142 (402)
T ss_pred hhHHHHHHHHHHHHHhCC-C------------EEEECChHHHHHHHHHHHHhccc------CCC-------CCCEEEEch
Confidence 455666777888999886 3 35566778899888876543211 011 223567777
Q ss_pred CCchHHHHHH--HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccc
Q psy11047 309 QAHSSVEKAG--LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLG 386 (943)
Q Consensus 309 ~aHySv~KAa--~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~ 386 (943)
..|.|+.... ......++.+|.+ |+++|++.+... +.+++.+.+.+.+|.+.|+++|.+
T Consensus 143 ~~H~s~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~~~~~------~~~~vl~~p~~~~G~~~~~~~i~~-------- 203 (402)
T PRK07505 143 NAHASLNILKGICADETEVETIDHN-----DLDALEDICKTN------KTVAYVADGVYSMGGIAPVKELLR-------- 203 (402)
T ss_pred hhhHhHHhhhhhhhcCCeEEEeCCC-----CHHHHHHHHhcC------CCEEEEEecccccCCcCCHHHHHH--------
Confidence 9999875422 2223467777753 789999888543 346666677888899999999999
Q ss_pred cccccccCchHHHHHHcCCCCCccchhhhHHhhhc
Q psy11047 387 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 421 (943)
Q Consensus 387 ~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~G 421 (943)
+|++||+ ++++|.+++
T Consensus 204 ------------l~~~~~~-------~li~DEa~~ 219 (402)
T PRK07505 204 ------------LQEKYGL-------FLYIDDAHG 219 (402)
T ss_pred ------------HHHHcCC-------EEEEECccc
Confidence 9999999 999999984
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.6e-06 Score=93.70 Aligned_cols=142 Identities=12% Similarity=0.010 Sum_probs=102.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|.......++...+.+|+++++|.+... ....++|+||++++..++.+. + .+| -
T Consensus 62 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-------~~~i~it~g~~~al~~~~~~l----~------~~g---------d 115 (384)
T PRK12414 62 YAPMAGIAALREALAEKTERLYGARYDP-------ASEVTVIASASEGLYAAISAL----V------HPG---------D 115 (384)
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCCC-------CCcEEEECChHHHHHHHHHHh----c------CCC---------C
Confidence 4333345678888999999999985210 025899999999976665431 1 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc---ccHHHhhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV---DSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI---DpL~eIa~ 378 (943)
.|++++-+|......+..-+.+++.++.++ ++.+|+++|++.++.. +.+|+.+...+.+|.+ +++++|.+
T Consensus 116 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~NPTG~~~s~~~~~~i~~ 189 (384)
T PRK12414 116 EVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPR------TRMIIVNTPHNPSATVFSAADLARLAQ 189 (384)
T ss_pred EEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcc------cEEEEEcCCCCCCCcCCCHHHHHHHHH
Confidence 366677777766666644334788888874 5689999999988642 5566767788889987 45778888
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+-.
T Consensus 190 --------------------~a~~~~~-------~ii~De~Y~~~ 207 (384)
T PRK12414 190 --------------------LTRNTDI-------VILSDEVYEHV 207 (384)
T ss_pred --------------------HHHHCCe-------EEEEhhhhhhc
Confidence 9999999 99999999754
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.8e-07 Score=101.10 Aligned_cols=125 Identities=10% Similarity=0.115 Sum_probs=89.0
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|. .+++++|.+ ..++++|||+|+..++.+. + .+| + .|
T Consensus 52 ~~p~~~~le~----~la~l~g~~------------~~~~~~sG~~Ai~~al~al----~------~~G--------d-~V 96 (380)
T TIGR01325 52 ANPTVAAFEE----RIAALEGAE------------RAVATATGMSAIQAALMTL----L------QAG--------D-HV 96 (380)
T ss_pred CCchHHHHHH----HHHHHhCCC------------cEEEECCHHHHHHHHHHHH----h------CCC--------C-EE
Confidence 3566677775 457888874 3588999999998887542 1 122 1 25
Q ss_pred EecCCCchHHH----HHH-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 305 YCSDQAHSSVE----KAG-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 305 ~~S~~aHySv~----KAa-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
+++...|.+.. +.+ .+|. ++..++.+ |+++++++++++ +.+|+....++.+|.+-|+++|.+
T Consensus 97 l~~~~~~~~t~~~~~~~~~~~g~-~v~~v~~~-----d~~~l~~~i~~~------tklV~le~p~np~g~~~dl~~I~~- 163 (380)
T TIGR01325 97 VASRSLFGSTVGFISEILPRFGI-EVSFVDPT-----DLNAWEAAVKPN------TKLVFVETPSNPLGELVDIAALAE- 163 (380)
T ss_pred EEecCCcchHHHHHHHHHHHhCC-EEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCCeeeCHHHHHH-
Confidence 55666665432 233 2343 67777764 688888877543 567777777888999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ +++||.+|+.+
T Consensus 164 -------------------la~~~gi-------~livD~a~~~~ 181 (380)
T TIGR01325 164 -------------------LAHAIGA-------LLVVDNVFATP 181 (380)
T ss_pred -------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999754
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-06 Score=99.90 Aligned_cols=126 Identities=15% Similarity=0.056 Sum_probs=89.4
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|.. +|++.|.+. ++++++|++|+..++.+. + .+| -.|
T Consensus 59 ~~p~~~~Le~~----lA~~~g~~~------------~i~~~sG~~Ai~~~l~al----l------~~G---------d~V 103 (388)
T PRK07811 59 GNPTRTALEEQ----LAALEGGAY------------GRAFSSGMAATDCLLRAV----L------RPG---------DHI 103 (388)
T ss_pred CCccHHHHHHH----HHHHhCCCc------------eEEeCCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 45777777764 477787753 467788898887776542 1 122 236
Q ss_pred EecCCCchHHHHHH-H-HC--CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG-L-IG--LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa-~-LG--~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+..... . +. +..+..++. .|+++|+++|.++ +.+|+....++.+|.+.|+++|.+
T Consensus 104 l~~~~~y~~t~~~~~~~~~~~gi~~~~~d~-----~d~e~l~~~i~~~------tklV~ie~p~NPtg~~~dl~~I~~-- 170 (388)
T PRK07811 104 VIPNDAYGGTFRLIDKVFTRWGVEYTPVDL-----SDLDAVRAAITPR------TKLIWVETPTNPLLSITDIAALAE-- 170 (388)
T ss_pred EEcCCCchHHHHHHHHhCcCCCeEEEEeCC-----CCHHHHHHhcCcC------CeEEEEECCCCCcceecCHHHHHH--
Confidence 67788887655443 2 22 224444443 4899999988653 567777778888899999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|.+|+..
T Consensus 171 ------------------la~~~gi-------~lIvD~a~a~~ 188 (388)
T PRK07811 171 ------------------LAHDAGA-------KVVVDNTFASP 188 (388)
T ss_pred ------------------HHHHcCC-------EEEEECCCCcc
Confidence 9999999 99999999755
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.4e-06 Score=94.12 Aligned_cols=128 Identities=14% Similarity=0.038 Sum_probs=93.6
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
++.+.++|+.. ++++|.+ .++.|++||.|+..||.+. |+ .+.-.|+
T Consensus 24 g~~~~~fE~~~----a~~~g~~------------~~~~~~sgt~Al~~al~~l-------------~~-----~~gdeVi 69 (363)
T PF01041_consen 24 GPYVEEFEKEF----AEYFGVK------------YAVAVSSGTSALHLALRAL-------------GL-----GPGDEVI 69 (363)
T ss_dssp SHHHHHHHHHH----HHHHTSS------------EEEEESSHHHHHHHHHHHT-------------TG-----GTTSEEE
T ss_pred CHHHHHHHHHH----HHHhCCC------------eEEEeCChhHHHHHHHHhc-------------CC-----CcCceEe
Confidence 78999999855 6777753 5799999999999998762 11 1223578
Q ss_pred ecCCCchHHHHHHHHCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 306 CSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 306 ~S~~aHySv~KAa~LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
+|..+..+...|...-+..++.+++| +++.||++++++.|++. +.+|+.+ ...|...++++|.+
T Consensus 70 ~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~------t~ai~~~---h~~G~~~d~~~i~~------ 134 (363)
T PF01041_consen 70 VPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPK------TKAILVV---HLFGNPADMDAIRA------ 134 (363)
T ss_dssp EESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTT------EEEEEEE----GGGB---HHHHHH------
T ss_pred cCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccC------ccEEEEe---cCCCCcccHHHHHH------
Confidence 89999999999885433488889988 89999999999999987 3445444 45677778999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++--|+|++-+
T Consensus 135 --------------~~~~~~i-------~lIeD~a~a~g 152 (363)
T PF01041_consen 135 --------------IARKHGI-------PLIEDAAQAFG 152 (363)
T ss_dssp --------------HHHHTT--------EEEEE-TTTTT
T ss_pred --------------HHHHcCC-------cEEEccccccC
Confidence 9999999 99999998766
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-06 Score=98.95 Aligned_cols=125 Identities=11% Similarity=0.093 Sum_probs=85.8
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|...++|.. +|++.|.+. .++++||++|+..++ . +++ +| + .
T Consensus 49 ~~~pt~~~le~~----la~l~g~~~------------~~~~~sG~~ai~~~~-~----ll~------~G--------d-~ 92 (366)
T PRK08247 49 TGNPTRGVLEQA----IADLEGGDQ------------GFACSSGMAAIQLVM-S----LFR------SG--------D-E 92 (366)
T ss_pred CCCchHHHHHHH----HHHHhCCCc------------EEEEcCHHHHHHHHH-H----HhC------CC--------C-E
Confidence 345677777764 588888753 488999998876443 2 121 22 2 3
Q ss_pred EEecCCCchHH----HHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 304 AYCSDQAHSSV----EKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 304 V~~S~~aHySv----~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
|+++...+.+. .+.+. +| .+++.++. .|+++++++|+++ +.+|.....++.+|.+.++++|.+
T Consensus 93 Vl~~~~~y~~t~~~~~~~~~~~G-~~v~~vd~-----~d~~~l~~~i~~~------tklv~le~P~NP~~~~~dl~~I~~ 160 (366)
T PRK08247 93 LIVSSDLYGGTYRLFEEHWKKWN-VRFVYVNT-----ASLKAIEQAITPN------TKAIFIETPTNPLMQETDIAAIAK 160 (366)
T ss_pred EEEecCCcCcHHHHHHHHhhccC-ceEEEECC-----CCHHHHHHhcccC------ceEEEEECCCCCCCcHHHHHHHHH
Confidence 55555555443 22232 34 46677765 3789999988654 556776666777899999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|.+|+..
T Consensus 161 --------------------la~~~g~-------~lIvD~t~~~~ 178 (366)
T PRK08247 161 --------------------IAKKHGL-------LLIVDNTFYTP 178 (366)
T ss_pred --------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999654
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-05 Score=91.99 Aligned_cols=160 Identities=15% Similarity=0.019 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284 (943)
Q Consensus 205 ~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~ 284 (943)
|..+-+.+..+++.....|..+....+|-..+.+++.+..|+.-.. ....++|.|+++|++.++.+--
T Consensus 43 p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~-------~~eiivt~Ga~~al~~~~~a~~----- 110 (393)
T COG0436 43 PEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDP-------EEEIIVTAGAKEALFLAFLALL----- 110 (393)
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCeEEEeCCHHHHHHHHHHHhc-----
Confidence 4444455555554432244455567788889999999998854321 1248999999999998887521
Q ss_pred hhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC---CCCCcCHHHHHHHHHHhhccCCCcEEEEEe
Q psy11047 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD---DKLSLRGDKLIEAIERDKKKHLIPFFIFSG 361 (943)
Q Consensus 285 ~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D---~~grmD~daLe~aI~~d~~kG~~P~~VVaT 361 (943)
.|| +- |++.+=.-.+......+-++.+..++++ .++++|.++|+++|..+ +.+++.+
T Consensus 111 -----~pG--------De-Vlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~k------tk~i~ln 170 (393)
T COG0436 111 -----NPG--------DE-VLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPK------TKAIILN 170 (393)
T ss_pred -----CCC--------CE-EEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCcc------ceEEEEe
Confidence 233 22 4444433333444445555588888864 48999999999999984 6799999
Q ss_pred cCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 362 LALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 362 aGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.-++-||++-+ +++|++ +|++||+ |+-.|-+|.+.
T Consensus 171 ~P~NPTGav~~~~~l~~i~~--------------------~a~~~~i-------~ii~DEiY~~l 208 (393)
T COG0436 171 SPNNPTGAVYSKEELKAIVE--------------------LAREHDI-------IIISDEIYEEL 208 (393)
T ss_pred CCCCCcCcCCCHHHHHHHHH--------------------HHHHcCe-------EEEEehhhhhc
Confidence 99999999955 777787 9999999 99999999887
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.8e-06 Score=97.03 Aligned_cols=156 Identities=7% Similarity=-0.171 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhC--CCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIG--LPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTE 281 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG--~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~ 281 (943)
++.++..+... +.. ...|..+....++-..+.+|+.+..+ +.. ...++|+|++++...++.+-
T Consensus 164 p~~~~~~~~~~-~~~-~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~----------~~I~it~G~~eal~~~~~~l--- 228 (517)
T PRK13355 164 PDEVVYDMAQQ-LTD-TEGYSDSKGLFSARKAIMQYAQLKGLPNVDV----------DDIYTGNGVSELINLSMSAL--- 228 (517)
T ss_pred CHHHHHHHHHH-hhc-CCCCCCCcChHHHHHHHHHHHHhcCCCCCCh----------hHEEEeCcHHHHHHHHHHHh---
Confidence 44455444433 332 22344433455565666666644332 222 36899999999987766531
Q ss_pred HHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEE
Q psy11047 282 AIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIF 359 (943)
Q Consensus 282 ~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VV 359 (943)
+ .+| -.|++++-++.....++.+.+.+++.++++. ++.+|+++|++++... +.+++
T Consensus 229 -~------~~G---------d~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~------~k~i~ 286 (517)
T PRK13355 229 -L------DDG---------DEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSR------TKAIV 286 (517)
T ss_pred -C------CCC---------CEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcC------ceEEE
Confidence 1 122 2356667777766766655445778888764 5789999999988653 56677
Q ss_pred EecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 360 SGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 360 aTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+..++-||.+-+ +.+|.+ +|++|++ |+.+|.+|.-+
T Consensus 287 i~nP~NPTG~v~~~~~l~~i~~--------------------~a~~~~~-------~ii~DE~Y~~~ 326 (517)
T PRK13355 287 IINPNNPTGALYPREVLQQIVD--------------------IAREHQL-------IIFSDEIYDRL 326 (517)
T ss_pred EECCCCCCCcCcCHHHHHHHHH--------------------HHHHcCc-------EEEEehhhhhh
Confidence 7778999999877 777777 9999999 99999999754
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-05 Score=92.78 Aligned_cols=148 Identities=14% Similarity=-0.008 Sum_probs=106.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|..+....++-..+.+|+.+..|++-. ....++|+|++++...++.+.. . .+| -
T Consensus 111 Y~~~~G~~~LR~aia~~~~~~~g~~~~--------~~~I~it~Ga~~al~~~~~~l~----~-----~~g---------D 164 (481)
T PTZ00377 111 YTDSAGYPFVRKAVAAFIERRDGVPKD--------PSDIFLTDGASSGIKLLLQLLI----G-----DPS---------D 164 (481)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCCC--------hhhEEEcCCHHHHHHHHHHHhc----c-----CCC---------C
Confidence 444445667777888888887776532 1368999999999877765421 0 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLG 377 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa 377 (943)
.|++..-++.+...++.+-+.+++.+++++ .+.+|+++|++++.....++..+.+++.+...+-||.+-+ +++|+
T Consensus 165 ~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~ 244 (481)
T PTZ00377 165 GVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEII 244 (481)
T ss_pred EEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHH
Confidence 366677777777777755445778888864 3589999999999864444434666666677889999977 67777
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|++||+ |+.+|.+|+..
T Consensus 245 ~--------------------~a~~~~~-------~iI~De~Y~~l 263 (481)
T PTZ00377 245 K--------------------FCYEKGI-------VLMADEVYQEN 263 (481)
T ss_pred H--------------------HHHHCCC-------EEEEehhhHhh
Confidence 7 9999999 99999999854
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-05 Score=91.58 Aligned_cols=156 Identities=12% Similarity=0.004 Sum_probs=101.3
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+.+.+...+......|.......++...+.+|+.+.+|.+-. ....++|+|+|+|+..++.+. .
T Consensus 51 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~--------~~~i~~t~G~~~al~~~~~~~----~---- 114 (402)
T PRK06107 51 IKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYA--------DNEITVGGGAKQAIFLALMAT----L---- 114 (402)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC--------hhhEEEeCCHHHHHHHHHHHh----c----
Confidence 445555555433223333334457777888899888887532 136899999999987776431 1
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
.+| -.|++++-.++....+...-....+.++++ +.+.+|+++|++++... +.+|+.+..++
T Consensus 115 --~~g---------d~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~N 177 (402)
T PRK06107 115 --EAG---------DEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPR------TRWLILNAPSN 177 (402)
T ss_pred --CCC---------CEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcC------ceEEEEECCCC
Confidence 122 245666655444444443323355667764 34579999999887532 55667777788
Q ss_pred ccccccc---HHHhhhhccccccccccccccCchHHHHHHc-CCCCCccchhhhHHhhhcCC
Q psy11047 366 AFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSY-FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 366 ~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~-Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+|.+-+ ++++++ +|++| |+ |+.+|-+|+..
T Consensus 178 PtG~~~s~~~~~~l~~--------------------~a~~~~~~-------~iI~De~y~~l 212 (402)
T PRK06107 178 PTGAVYSRAELRALAD--------------------VLLRHPHV-------LVLTDDIYDHI 212 (402)
T ss_pred CCCcCcCHHHHHHHHH--------------------HHHHcCCe-------EEEEehhcccc
Confidence 9998865 556666 89998 99 99999999754
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.6e-06 Score=97.61 Aligned_cols=126 Identities=10% Similarity=0.045 Sum_probs=90.6
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...+||..+ |++.|.+ ..++++||+.|+..++.+. + .+| -.|
T Consensus 62 ~~p~~~~Le~~i----A~~~g~~------------~~l~~~sG~~Ai~~al~~l----l------~~G---------d~V 106 (400)
T PRK06234 62 GNPTSTEVENKL----ALLEGGE------------AAVVAASGMGAISSSLWSA----L------KAG---------DHV 106 (400)
T ss_pred CCccHHHHHHHH----HHHhCCC------------cEEEEcCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 568888888755 6667753 3589999999987776532 1 122 235
Q ss_pred EecCCCchHHHH----HHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEK----AGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~K----Aa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+... ++...+.+++.++.+ |+++++++|+.. +.+|+....++.+|.+-|+++|.+
T Consensus 107 l~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~e~l~~~i~~~------tklI~iesP~NPtG~v~dl~~I~~-- 173 (400)
T PRK06234 107 VASDTLYGCTFALLNHGLTRYGVEVTFVDTS-----NLEEVRNALKAN------TKVVYLETPANPTLKVTDIKAISN-- 173 (400)
T ss_pred EEecCccchHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHHhccC------CeEEEEECCCCCCCCcCCHHHHHH--
Confidence 666766655333 233334467777653 789999988653 567777788888999999999999
Q ss_pred cccccccccccccCchHHHHHHc--CCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSY--FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~--Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++ |+ ++.+|.+|+..
T Consensus 174 ------------------la~~~~~~i-------~livDea~~~~ 193 (400)
T PRK06234 174 ------------------IAHENNKEC-------LVFVDNTFCTP 193 (400)
T ss_pred ------------------HHHhcCCCC-------EEEEECCCCch
Confidence 99997 88 99999999755
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.6e-06 Score=95.64 Aligned_cols=136 Identities=9% Similarity=0.001 Sum_probs=96.5
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
+|...++|.. +|+++|.+ ..++|+|||+|++.|+.+.....+.. .++ .+.-.|+
T Consensus 62 G~~~~~fe~~----lA~~~g~~------------~~v~~~sGt~al~~aL~al~~~~~~~-----~~~-----~pGd~VI 115 (438)
T PRK15407 62 GRFNDAFEKK----LAEFLGVR------------YALLVNSGSSANLLAFSALTSPKLGD-----RAL-----KPGDEVI 115 (438)
T ss_pred ChhHHHHHHH----HHHHhCCC------------eEEEECCHHHHHHHHHHHHhhccccc-----cCC-----CCCCEEE
Confidence 4555667654 56777764 36899999999999987653221110 011 1223477
Q ss_pred ecCCCchHHHHHHHHCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 306 CSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 306 ~S~~aHySv~KAa~LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
++..+|.+...+...-+..++.++++ .++.+|++++++++..+ +.+|+.+. ..|...++++|.+
T Consensus 116 v~~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~~------tkaVi~~~---~~G~p~dl~~I~~------ 180 (438)
T PRK15407 116 TVAAGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSPK------TKAIMIAH---TLGNPFDLAAVKA------ 180 (438)
T ss_pred ECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCcC------CeEEEEeC---CCCChhhHHHHHH------
Confidence 88999999888875433477778876 57889999999988653 45566554 2456678999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.+|+|++-+
T Consensus 181 --------------la~~~gi-------~vIeDaa~a~G 198 (438)
T PRK15407 181 --------------FCDKHNL-------WLIEDNCDALG 198 (438)
T ss_pred --------------HHHHCCC-------EEEEECccchh
Confidence 9999999 99999998755
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.5e-06 Score=91.86 Aligned_cols=145 Identities=12% Similarity=0.048 Sum_probs=103.0
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCC-cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPG-GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~-~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
.|........+...+.+|+.+..|++-+ .. ..++|+|++++...++.+. . .+|- .
T Consensus 31 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~--------~~~~Iiit~Gs~~ai~~~~~~~----~------~~g~------~ 86 (350)
T TIGR03537 31 QYPSALGTKALREAISGWFERRFGVKLD--------PDAQVLPSAGSKEAIFHFPLVF----I------DPEE------D 86 (350)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCC--------CCCcEEEcCChHHHHHHHHHHH----c------CCCC------C
Confidence 3433334568888899999888786532 12 5899999999986655432 1 1220 0
Q ss_pred ceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHH
Q psy11047 301 RLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCC 375 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~e 375 (943)
.-.|++..-++.....++..-+.+++.++.+. ...+|++++++++..+ +.+++.+..++.+|.+-| +++
T Consensus 87 ~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~p~NPtG~~~~~~~~~~ 160 (350)
T TIGR03537 87 RRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEE------TKIVWINYPHNPTGATAPRSYLKE 160 (350)
T ss_pred CceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhc------cEEEEEeCCCCCcCcccCHHHHHH
Confidence 12466667777777777755445888888863 3468999999988753 556777778899998877 777
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|.+ +|++||+ ++.+|.+|+-.
T Consensus 161 l~~--------------------~a~~~~~-------~ii~De~y~~~ 181 (350)
T TIGR03537 161 TIA--------------------MCREHGI-------ILCSDECYTEI 181 (350)
T ss_pred HHH--------------------HHHHcCc-------EEEEecccccc
Confidence 777 8999999 99999999754
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-06 Score=101.46 Aligned_cols=123 Identities=10% Similarity=0.029 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
|...++| ++++++.|.+ ..++++||+.+. .+++. ++ .+| -.|++
T Consensus 133 pt~~aLE----~~lA~leg~e------------~ai~~~SG~aAi-~~il~----ll------~~G---------D~VI~ 176 (464)
T PLN02509 133 PTRDALE----SLLAKLDKAD------------RAFCFTSGMAAL-SAVTH----LI------KNG---------EEIVA 176 (464)
T ss_pred HHHHHHH----HHHHHHhCCC------------EEEEeCcHHHHH-HHHHH----Hh------CCC---------CEEEE
Confidence 5555555 4677887643 356778887653 33332 12 123 23667
Q ss_pred cCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 307 SDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 307 S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
++..|.+..+.+ ...+..++.++. .|.++++++|..+ +.+|+.+..++.+|.+.|+++|++
T Consensus 177 ~~~~y~~t~~ll~~~l~~~G~~v~~vd~-----~d~e~l~~ai~~~------TklV~lesPsNPtG~i~Dl~~I~~---- 241 (464)
T PLN02509 177 GDDVYGGSDRLLSQVVPRSGVVVKRVNT-----TNLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKIAE---- 241 (464)
T ss_pred cCCchhhHHHHHHHHHHHCCeEEEEeCC-----CCHHHHHHhCCcC------CeEEEEECCCCCCCCHHHHHHHHH----
Confidence 888887766443 223346666653 3688888888543 568888889999999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.||.||+..
T Consensus 242 ----------------lAk~~g~-------~lIVD~A~a~~ 259 (464)
T PLN02509 242 ----------------MAHAQGA-------LVLVDNSIMSP 259 (464)
T ss_pred ----------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999998755
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.4e-06 Score=93.14 Aligned_cols=158 Identities=8% Similarity=-0.042 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 206 SLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 206 silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
..+.+.+...+......|..++...++...+.+|+.+..|++-. ....++|+|++++...++.+- .
T Consensus 48 ~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~--------~~~i~it~G~~~al~~~~~~~----~-- 113 (387)
T PRK08960 48 EPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVD--------PERILVTPGGSGALLLASSLL----V-- 113 (387)
T ss_pred HHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCC--------hhhEEEccCcHHHHHHHHHHh----c--
Confidence 33445555555433334544555667777788888877776432 136899999999987665431 1
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.+| -.|++++-+|.+....+..-+.+++.++++.+ +.+|+++|++.+++. +.+++.+..
T Consensus 114 ----~~g---------d~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~p 174 (387)
T PRK08960 114 ----DPG---------KHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNAD------TVGALVASP 174 (387)
T ss_pred ----CCC---------CEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCcc------ceEEEEECC
Confidence 122 24677888888887777543447888888654 479999999887654 445666677
Q ss_pred CCcccccccHH---HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDSYC---CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDpL~---eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++.+|.+-+.+ +|++ +|++||+ |+.+|.+|...
T Consensus 175 ~NPtG~~~~~~~~~~l~~--------------------~~~~~~~-------~li~De~Y~~~ 210 (387)
T PRK08960 175 ANPTGTLLSRDELAALSQ--------------------ALRARGG-------HLVVDEIYHGL 210 (387)
T ss_pred CCCCCcCcCHHHHHHHHH--------------------HHHHcCC-------EEEEEcccccc
Confidence 88999987654 5555 8999999 99999999765
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-05 Score=90.84 Aligned_cols=161 Identities=12% Similarity=-0.047 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcc---CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINCL---GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEA 282 (943)
Q Consensus 206 silgd~L~~alN~n---~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~ 282 (943)
..+.+.+..+++.. ...|........+...+.+|+.+..+.+-. ....++|+|+|++...++.+.
T Consensus 49 ~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~--------~~~i~~t~G~~~al~~~~~~l---- 116 (394)
T PRK06836 49 AAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLT--------ADHIVMTCGAAGALNVALKAI---- 116 (394)
T ss_pred HHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCC--------cCcEEEeCChHHHHHHHHHHh----
Confidence 34445554444322 122323333445555566666665544211 135789999999986665432
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEe
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSG 361 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaT 361 (943)
. .+| -.|++++-++.....++...+.+++.++++++ +.+|+++|++.++.+ +.+|+.+
T Consensus 117 ~------~~g---------d~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~------~~~v~~~ 175 (394)
T PRK06836 117 L------NPG---------DEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPK------TKAVIIN 175 (394)
T ss_pred c------CCC---------CEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcC------ceEEEEe
Confidence 1 122 23666777777666666433448999998766 789999999998653 5567777
Q ss_pred cCCCcccccccHHHhhhhccccccccccccccCchHHHHHH------cCCCCCccchhhhHHhhhcCC
Q psy11047 362 LALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS------YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 362 aGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~------~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
..++.+|.+-|.+++.+ +-.+|++ ||+ |+-+|.+|+.+
T Consensus 176 ~p~NPtG~~~~~~~~~~-----------------l~~la~~~~~~~~~~~-------~ii~De~y~~~ 219 (394)
T PRK06836 176 SPNNPTGVVYSEETLKA-----------------LAALLEEKSKEYGRPI-------YLISDEPYREI 219 (394)
T ss_pred CCCCCCCcCCCHHHHHH-----------------HHHHHHHhhhccCCCe-------EEEEecccccc
Confidence 78999999877554443 0017888 899 99999999765
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-05 Score=90.71 Aligned_cols=134 Identities=11% Similarity=-0.004 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC-ch
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA-HS 312 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a-Hy 312 (943)
.++.+.|++++|++ ...|+++||+||..|+..||.+..++ .++. .++.+|++-+.+ |-
T Consensus 82 ~~l~~~l~~~~~~~------------~~~~~~SGs~A~e~ai~~a~~~~~~~-----~~~~----~~~~~i~~~~~~yhg 140 (401)
T TIGR01885 82 GEFAEYVTKLFGYD------------KVLPMNTGAEAVETAIKLARKWGYKV-----KGIP----ENQAIIVSAKGNFHG 140 (401)
T ss_pred HHHHHHHHhhcCCC------------EEEEeCccHHHHHHHHHHHHHHhhhh-----cCCC----CCCCEEEEECCCcCc
Confidence 33444667777754 35899999999999999998753211 1110 123455555556 44
Q ss_pred HHHHHHHHCC------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHh
Q psy11047 313 SVEKAGLIGL------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCL 376 (943)
Q Consensus 313 Sv~KAa~LG~------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eI 376 (943)
+..-+..++. ..+..++-+ |+++|++.|+... ....+|+.--....+|.+-| +++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~---~~~~avi~E~v~~~~G~~~~~~~~l~~l 212 (401)
T TIGR01885 141 RTLGAISMSTDPDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDHG---PNVCAFIVEPIQGEAGVVVPDDGYLKKV 212 (401)
T ss_pred ccHHHHhCcCCcccccccCCCCCCceEeCCC-----CHHHHHHHHHhcC---CCEEEEEEeCccCCCCCccCCHHHHHHH
Confidence 5444443321 123333332 6899999886432 12334443223334577765 8999
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+ +|++||+ ++.+|.++.|.
T Consensus 213 ~~--------------------l~~~~~~-------lli~DEv~~g~ 232 (401)
T TIGR01885 213 RE--------------------LCTKHNV-------LLIADEIQTGL 232 (401)
T ss_pred HH--------------------HHHHcCC-------EEEEechhhCC
Confidence 99 9999999 99999998664
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.5e-06 Score=97.49 Aligned_cols=126 Identities=9% Similarity=-0.062 Sum_probs=87.1
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|.. ||++.|.+ ..+++++|++|+..++.+.. .+| + .|
T Consensus 56 ~~pt~~~Le~~----lA~l~g~~------------~~l~~ssG~~Ai~~al~al~----------~~G--------d-~V 100 (425)
T PRK06084 56 MNPTNDVLEQR----VAALEGGV------------GALAVASGMAAITYAIQTIA----------EAG--------D-NI 100 (425)
T ss_pred CCchHHHHHHH----HHHHhCCC------------ceeEehhHHHHHHHHHHHHh----------CCC--------C-EE
Confidence 45777777764 57777743 36899999999887776431 122 1 25
Q ss_pred EecCCCchHHHHHH-H-HC--CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG-L-IG--LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa-~-LG--~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...+......+ . +- +..+..++. .|+++++++|+++ +.+|+....++.+|.+-|+++|.+
T Consensus 101 l~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~-----~d~e~le~ai~~~------tklV~lesp~NPtG~v~dl~~I~~-- 167 (425)
T PRK06084 101 VSVAKLYGGTYNLLAHTLPRIGIETRFAAH-----DDIAALEALIDER------TKAVFCESIGNPAGNIIDIQALAD-- 167 (425)
T ss_pred EEeCCCcchHHHHHHHhcccceeEEEEECC-----CCHHHHHHHhccC------CcEEEEeCCCCCCCeecCHHHHHH--
Confidence 55555555444433 2 11 123444443 4899999998764 556777778889999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|.+|+..
T Consensus 168 ------------------la~~~~i-------~vVvD~a~a~~ 185 (425)
T PRK06084 168 ------------------AAHRHGV-------PLIVDNTVATP 185 (425)
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999754
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-05 Score=89.28 Aligned_cols=112 Identities=9% Similarity=-0.197 Sum_probs=83.1
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcC
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLR 337 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD 337 (943)
..++|+|+++++..++.+. + .+| -.|++++-+|.....++..-+.+++.++++. .+.+|
T Consensus 97 ~i~~t~G~~~~l~~~~~~~----~------~~g---------d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d 157 (404)
T PRK09265 97 DIYIGNGVSELIVMAMQAL----L------NNG---------DEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPD 157 (404)
T ss_pred cEEEeCChHHHHHHHHHHh----C------CCC---------CEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCC
Confidence 6789999999886665431 1 122 2366778888887777754334667777653 46799
Q ss_pred HHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhh
Q psy11047 338 GDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 414 (943)
Q Consensus 338 ~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwL 414 (943)
.+++++.+... +.+|+.+..++.+|.+-+ +++|.+ +|+++|+ ++
T Consensus 158 ~~~l~~~~~~~------~~~v~l~~P~NPtG~~~~~~~~~~i~~--------------------~a~~~~~-------~i 204 (404)
T PRK09265 158 LDDIRSKITPR------TKAIVIINPNNPTGAVYSKELLEEIVE--------------------IARQHNL-------II 204 (404)
T ss_pred HHHHHHhcccc------ceEEEEECCCCCCCcCCCHHHHHHHHH--------------------HHHHCCC-------EE
Confidence 99999887543 556777778889999877 777887 9999999 99
Q ss_pred hHHhhhcCC
Q psy11047 415 KFEALVLGD 423 (943)
Q Consensus 415 HVDAA~GG~ 423 (943)
.+|.+|+.+
T Consensus 205 i~De~y~~~ 213 (404)
T PRK09265 205 FADEIYDKI 213 (404)
T ss_pred EEehhhhhc
Confidence 999999865
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.1e-06 Score=96.60 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=90.1
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|...++|. .+|++.|.+ ..++|+||++|+..++.+- + .+| ..
T Consensus 48 ~~~p~~~~le~----~lA~l~g~~------------~v~~~~gg~~Ai~~~l~al----l------~~G---------D~ 92 (382)
T TIGR02080 48 SGNPTRDLLQQ----ALAELEGGA------------GAVVTNTGMSAIHLVTTAL----L------GPD---------DL 92 (382)
T ss_pred CCCchHHHHHH----HHHHHhCCC------------cEEEEcCHHHHHHHHHHHH----c------CCC---------CE
Confidence 34566777766 567888732 4789999999987666542 1 122 24
Q ss_pred EEecCCCchHHHHHH-H---HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAG-L---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa-~---LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++...|.+..... . .+...+..++. .|+++++++|+.+ +.+|+.+..++.+|.+-|+++|.+
T Consensus 93 Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~-----~d~~~l~~ai~~~------tklV~l~~p~NPtG~~~dl~~I~~- 160 (382)
T TIGR02080 93 LVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ-----GDEQALRAALAQK------PKLVLIETPSNPLLRVVDIAKICH- 160 (382)
T ss_pred EEEcCCCcHHHHHHHHHHHhhcCeEEEEECC-----CCHHHHHHhcCcC------ceEEEEECCCCCCCEecCHHHHHH-
Confidence 667777877654433 2 23334444432 3789999888653 567777888899999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++-+|.+|+.+
T Consensus 161 -------------------la~~~g~-------~vvvD~a~~~~ 178 (382)
T TIGR02080 161 -------------------LAKAVGA-------VVVVDNTFLSP 178 (382)
T ss_pred -------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999654
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.8e-06 Score=97.57 Aligned_cols=128 Identities=9% Similarity=-0.016 Sum_probs=91.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
....|...++|+. +|++.|.+ ..+++++|+.|+..++.+. + .+| -
T Consensus 66 r~~~p~~~~le~~----lA~l~g~~------------~al~~~sG~~Ai~~~l~al----l------~~G---------d 110 (403)
T PRK07810 66 RYGNPTVSMFEER----LRLIEGAE------------ACFATASGMSAVFTALGAL----L------GAG---------D 110 (403)
T ss_pred CCCCchHHHHHHH----HHHHhCCC------------cEEEECChHHHHHHHHHHH----h------CCC---------C
Confidence 3466778888875 47888864 3689999999988766542 1 122 2
Q ss_pred EEEecCCCchHHH----HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSSVE----KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~----KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
.|+++...|.... +.+..-+..+..++.+ |+++++++|+++ +.+|+...-++.+|.+-|+++|++
T Consensus 111 ~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~~------tklV~~esp~Nptg~v~dl~~I~~ 179 (403)
T PRK07810 111 RLVAARSLFGSCFVVCNEILPRWGVETVFVDGE-----DLSQWEEALSVP------TQAVFFETPSNPMQSLVDIAAVSE 179 (403)
T ss_pred EEEEccCCcchHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCeecCHHHHHH
Confidence 4666766663332 2232223467777642 889999998764 567777788888999999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.||.+|+..
T Consensus 180 --------------------la~~~g~-------~vivD~a~a~~ 197 (403)
T PRK07810 180 --------------------LAHAAGA-------KVVLDNVFATP 197 (403)
T ss_pred --------------------HHHHcCC-------EEEEECCCCcc
Confidence 9999999 99999999754
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-06 Score=98.35 Aligned_cols=128 Identities=9% Similarity=0.036 Sum_probs=89.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
....|...++|. .+|++.|.+ ..++|++|++|+..++.+.. .+| +
T Consensus 53 r~~~p~~~~le~----~lA~l~g~~------------~~v~~~sG~~Ai~~al~~l~----------~~G--------d- 97 (418)
T TIGR01326 53 RLMNPTTDVLEQ----RIAALEGGV------------AALAVASGQAAITYAILNLA----------QAG--------D- 97 (418)
T ss_pred CCCChhHHHHHH----HHHHHhCCC------------eEEEEccHHHHHHHHHHHHh----------CCC--------C-
Confidence 345566666666 458888864 36899999999988876531 122 1
Q ss_pred EEEecCCCchHHH----HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSSVE----KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~----KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
.|+++...|.+.. +.+..-+..++.++.+ |+++++++|.+. +.+|+....++.+|.+-|+++|++
T Consensus 98 ~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~~------t~~V~le~p~NPtg~v~dl~~I~~ 166 (418)
T TIGR01326 98 NIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD-----DPEEFEKAIDEN------TKAVFAETIGNPAINVPDIEAIAE 166 (418)
T ss_pred EEEEECCCcHHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHH
Confidence 3556666664432 2332223467777653 789999888653 456666667778899999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|.+|+..
T Consensus 167 --------------------la~~~~i-------~livD~t~~~~ 184 (418)
T TIGR01326 167 --------------------VAHAHGV-------PLIVDNTFATP 184 (418)
T ss_pred --------------------HHHHcCC-------EEEEECCCchh
Confidence 9999999 99999999744
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.5e-06 Score=92.10 Aligned_cols=125 Identities=11% Similarity=-0.026 Sum_probs=87.9
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE 315 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~ 315 (943)
+++.+|+.+|.+.+ ..++|+|++++...++.+- . .+| .-.|++.+-.+....
T Consensus 65 Lr~aia~~~~~~~~----------~I~it~Gs~~~i~~~~~~~----~------~~g--------~d~vlv~~P~y~~y~ 116 (354)
T PRK04635 65 LINAYSAYAGVAPE----------QILTSRGADEAIELLIRAF----C------EPG--------QDSIACFGPTYGMYA 116 (354)
T ss_pred HHHHHHHHhCcCHH----------HEEEeCCHHHHHHHHHHHh----c------CCC--------CCeEEEcCCChHHHH
Confidence 45566777888765 6899999999986665431 1 121 123455555555455
Q ss_pred HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCc
Q psy11047 316 KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTN 395 (943)
Q Consensus 316 KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~Rr 395 (943)
..+...+.+++.+|+++++.+|.+.+++ + . .+.+|+.+...+-||.+-|.+++.+
T Consensus 117 ~~~~~~g~~v~~v~~~~~~~~~~~~l~~-~-~------~~~li~i~nP~NPTG~~~~~~~l~~----------------- 171 (354)
T PRK04635 117 ISAETFNVGVKALPLTADYQLPLDYIEQ-L-D------GAKLVFICNPNNPTGTVIDRADIEQ----------------- 171 (354)
T ss_pred HHHHHcCCEEEEEecCCCCCCCHHHHHh-c-c------CCCEEEEeCCCCCCCccCCHHHHHH-----------------
Confidence 5555444588999998788999998862 3 1 2567777889999999999999888
Q ss_pred hHHHHHHc-CCCCCccchhhhHHhhhcCC
Q psy11047 396 FPNFILSY-FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 396 fR~iar~~-Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++.. ++ ++.+|.||.-+
T Consensus 172 ---l~~~~~~~-------~vivDeay~~~ 190 (354)
T PRK04635 172 ---LIEMTPDA-------IVVVDEAYIEF 190 (354)
T ss_pred ---HHHhCCCc-------EEEEeCchHhh
Confidence 77653 57 99999999754
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-06 Score=97.18 Aligned_cols=126 Identities=10% Similarity=-0.009 Sum_probs=87.9
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|+ .+++++|.+. .+++++|+.|+..++.+. + .+| -.|
T Consensus 63 ~~p~~~~le~----~lA~l~g~~~------------~i~~~sG~~Al~~~l~~l----l------~~G---------d~V 107 (403)
T PRK07503 63 SNPTLALLEQ----RMASLEGGEA------------AVALASGMGAITATLWTL----L------RPG---------DEV 107 (403)
T ss_pred CCchHHHHHH----HHHHHhCCCc------------EEEEcCHHHHHHHHHHHH----c------CCC---------CEE
Confidence 4677777776 5688888753 578889999876665431 1 122 235
Q ss_pred EecCCCchHHHH----HHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEK----AGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~K----Aa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|..... ++..-+..++.++.+ |+++++++|+++ +.+|+....++.+|.+-|+++|.+
T Consensus 108 iv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~------tklV~le~p~NPtG~~~di~~I~~-- 174 (403)
T PRK07503 108 IVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-----DPAALKAAISDK------TRMVYFETPANPNMRLVDIAAVAE-- 174 (403)
T ss_pred EEccCccchHHHHHHHHHhhCCEEEEEeCCC-----CHHHHHHhcCcc------CcEEEEeCCCCCCCeeeCHHHHHH--
Confidence 566666643322 222223366666653 689999888653 556776777888999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|++|+..
T Consensus 175 ------------------la~~~gi-------~lIvD~a~a~~ 192 (403)
T PRK07503 175 ------------------IAHGAGA-------KVVVDNTYCTP 192 (403)
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999754
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-06 Score=101.10 Aligned_cols=136 Identities=13% Similarity=0.020 Sum_probs=91.0
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCc-EEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGG-GVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~-GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.-...++|..+++...++||++... ++ -|---+||.||+.++++- + .|| -.|
T Consensus 189 ~~~iD~iE~la~era~~lF~~~~~~--------~gaNVQp~SGs~AN~aV~~AL----l------~PG---------D~I 241 (586)
T PLN02271 189 NQYIDQIERLCCERALAAFGLDSEK--------WGVNVQPYSCTSANFAVYTGL----L------LPG---------DRI 241 (586)
T ss_pred ChhHHHHHHHHHHHHHHHhCCcccc--------cccceeeccHHHHHHHHHHHh----c------CCC---------CEE
Confidence 3456799999999999999987531 11 244559999998887642 1 233 123
Q ss_pred Ee---cCCCchHHH-------HHHHHCCccEEEEe--cC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc
Q psy11047 305 YC---SDQAHSSVE-------KAGLIGLVNMRYIE--SD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD 371 (943)
Q Consensus 305 ~~---S~~aHySv~-------KAa~LG~~~v~~Vp--~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID 371 (943)
+. +.-+|.+.. ++...|. .+..++ +| ++|.+|.++|++..... .|.+|++..- ... ..-
T Consensus 242 L~ldl~~GGHlshg~~~~~g~~vs~sG~-~~~~vpY~~d~~~g~IDyd~lek~a~~~-----rPKLII~g~S-ayp-r~~ 313 (586)
T PLN02271 242 MGLDSPSGGHMSHGYYTPGGKKVSGASI-FFESLPYKVNPQTGYIDYDKLEEKALDF-----RPKILICGGS-SYP-REW 313 (586)
T ss_pred EEecCCCCCchhcccccccccccccccc-eEEEEEcccccccCccCHHHHHHHhhhc-----CCeEEEECch-hcc-CcC
Confidence 33 335676643 1222343 344554 64 68999999999854332 2777776332 222 556
Q ss_pred cHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 372 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 372 pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|++++++ +|+++|+ ++.+|+|+..+
T Consensus 314 D~~~i~e--------------------IAdevGA-------~LmvD~AH~aG 338 (586)
T PLN02271 314 DYARFRQ--------------------IADKCGA-------VLMCDMAHISG 338 (586)
T ss_pred CHHHHHH--------------------HHHHcCC-------EEEEECccccc
Confidence 7999999 9999999 99999998776
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-05 Score=90.89 Aligned_cols=156 Identities=12% Similarity=0.006 Sum_probs=108.1
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+.+.+...+......|.......++...+.+|+.+..|.+-. ....++|+|+|+|...++.+- +
T Consensus 48 ~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~--------~~~i~~t~G~~~al~~~~~~l----~---- 111 (388)
T PRK07337 48 VVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVA--------PERIVVTAGASAALLLACLAL----V---- 111 (388)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC--------hHhEEEecCcHHHHHHHHHHh----c----
Confidence 344455444433333444445678888888898888886422 135789999999976655431 1
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
.+| -.|++++-+|.+...++..-+.+++.++.+. ++.+|+++|++.+... +.+|+.+...+
T Consensus 112 --~~g---------d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~N 174 (388)
T PRK07337 112 --ERG---------DEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGER------TRGVLLASPSN 174 (388)
T ss_pred --CCC---------CEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCcc------ceEEEEECCCC
Confidence 122 2467778888887777643334788888864 4689999999888643 45666677888
Q ss_pred ccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 366 AFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 366 ~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+|.+-+ +++|.+ +|+++|+ |+.+|.+|..+
T Consensus 175 PtG~~~~~~~~~~i~~--------------------~a~~~~~-------~ii~De~y~~~ 208 (388)
T PRK07337 175 PTGTSIAPDELRRIVE--------------------AVRARGG-------FTIVDEIYQGL 208 (388)
T ss_pred CCCcCcCHHHHHHHHH--------------------HHHHCCC-------EEEEecccccc
Confidence 9998765 667777 8999999 99999999865
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.1e-06 Score=92.03 Aligned_cols=169 Identities=14% Similarity=-0.027 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccc
Q psy11047 171 WDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEF 250 (943)
Q Consensus 171 ~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~f 250 (943)
.++.++.+.+.+..|....- -.|+|.- ..|.+... ...++...+ ....+...+.+++|+++|.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~-~~ylgl~----~~~~~~~~-~~~~~~~~~-------g~~~~~~~Le~~lA~~~g~~~e- 72 (346)
T TIGR03576 7 REKALEIIREKISRGGRDSL-YDLTGLA----GGFKIDEE-DLELLETYV-------GPAIFEEKVQELGREHLGGPEE- 72 (346)
T ss_pred HHHHHHHHHHHHhccCCccc-cccccCC----CChhHHHH-HHHHHHHhc-------CCHHHHHHHHHHHHHHcCCCcc-
Confidence 46677777777765532211 1244432 33444433 223333332 1337777788899999999654
Q ss_pred cccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe-c-CCCchHHHHHHHHCCccEEEE
Q psy11047 251 LHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC-S-DQAHSSVEKAGLIGLVNMRYI 328 (943)
Q Consensus 251 l~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~-S-~~aHySv~KAa~LG~~~v~~V 328 (943)
..++++||++||..++.+- . .+| +.+++. + ...|.|+..++.+.+.++..
T Consensus 73 ---------~ilv~~gg~~a~~~~~~al----~------~~g--------d~Vli~~~d~p~~~s~~~~~~l~ga~~~~- 124 (346)
T TIGR03576 73 ---------KILVFNRTSSAILATILAL----E------PPG--------RKVVHYLPEKPAHPSIPRSCKLAGAEYFE- 124 (346)
T ss_pred ---------eEEEECCHHHHHHHHHHHh----C------CCC--------CEEEECCCCCCCchhHHHHHHHcCCEEec-
Confidence 5789999999998776642 1 122 233332 3 46999998888653334322
Q ss_pred ecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc---ccHHHhhhhccccccccccccccCchHHHHHHcCC
Q psy11047 329 ESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFP 405 (943)
Q Consensus 329 p~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl 405 (943)
. .+.++|+ .. . .+.+|+.| |+...|.+ .||++|.+ +|++||.
T Consensus 125 -~-----~~l~~l~----~~-~---~~~lIiit-g~s~~G~v~~~~~L~~i~~--------------------la~~~~~ 169 (346)
T TIGR03576 125 -S-----DELSELK----KI-D---GTSLVVIT-GSTMDLKVVSEEDLKRVIK--------------------QAKSKEA 169 (346)
T ss_pred -c-----CCHHHHh----hC-c---CceEEEEE-CCCCCCcccCHHHHHHHHH--------------------HHHHcCC
Confidence 1 1334432 11 1 14455554 56777887 78999999 9999999
Q ss_pred CCCccchhhhHHhhhcCC
Q psy11047 406 KFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 406 ~~~~l~lwLHVDAA~GG~ 423 (943)
|+.||-||+.+
T Consensus 170 -------~livDEAy~~~ 180 (346)
T TIGR03576 170 -------IVLVDDASGAR 180 (346)
T ss_pred -------EEEEECCcccc
Confidence 99999999865
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.4e-05 Score=89.05 Aligned_cols=158 Identities=6% Similarity=0.004 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHhcc-CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINCL-GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284 (943)
Q Consensus 206 silgd~L~~alN~n-~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~ 284 (943)
..+.+.+...++.. ...|. .+....+-..+.+|+.+..|++-.. ....++|+|++++...++.+. +
T Consensus 48 ~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~-------~~~I~it~G~~~al~~~~~~~----~- 114 (399)
T PRK07681 48 DFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNA-------DKEVLLLMGSQDGLVHLPMVY----A- 114 (399)
T ss_pred HHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCC-------CCeEEECCCcHHHHHHHHHHh----C-
Confidence 34555555555432 12222 2345667777888888777764320 025789999999976654431 1
Q ss_pred hhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEec
Q psy11047 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGL 362 (943)
Q Consensus 285 ~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTa 362 (943)
.+| ..|++.+-++......+..-+.+++.+|++++ +.+|++++++++... +.+|+.+.
T Consensus 115 -----~~G---------d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~ 174 (399)
T PRK07681 115 -----NPG---------DIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADK------AKMMILNF 174 (399)
T ss_pred -----CCC---------CEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeC
Confidence 122 23666677777666666544458888998754 467999998887542 56677776
Q ss_pred CCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 363 ALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 363 GTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
..+-+|.+-+ +++|.+ +|++||+ |+-+|.+|+.+
T Consensus 175 P~NPTG~~~s~~~~~~i~~--------------------~a~~~~~-------~iI~De~y~~~ 211 (399)
T PRK07681 175 PGNPVPAMAHEDFFKEVIA--------------------FAKKHNI-------IVVHDFAYAEF 211 (399)
T ss_pred CCCCcCcCCCHHHHHHHHH--------------------HHHHcCe-------EEEEeccchhh
Confidence 7888998877 666777 8999999 99999999865
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.3e-06 Score=92.42 Aligned_cols=127 Identities=10% Similarity=-0.064 Sum_probs=85.6
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
...+.+|+.+|++.+ ..++|+|++++...++.+. . .+| ..|++.+-++.+.
T Consensus 71 ~Lr~~ia~~~~~~~~----------~I~it~G~~~~l~~~~~~~----~------~~g---------d~vlv~~p~y~~~ 121 (369)
T PRK08153 71 DLRHALAAHHGVAPE----------NIMVGEGIDGLLGLIVRLY----V------EPG---------DPVVTSLGAYPTF 121 (369)
T ss_pred HHHHHHHHHhCCCHH----------HEEEcCCHHHHHHHHHHHh----c------CCC---------CEEEECCCcchHH
Confidence 344556666787654 5889999999875544321 1 122 2466677777777
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
...+.+-+.+++.+|.+++ .+|++++.+.+.... +.+++.+...+-+|.+-|.+++.+
T Consensus 122 ~~~~~~~g~~~~~vp~~~~-~~~~~~l~~~~~~~~-----~~~i~l~~P~NPtG~~~~~~~l~~---------------- 179 (369)
T PRK08153 122 NYHVAGFGGRLVTVPYRDD-REDLDALLDAARREN-----APLVYLANPDNPMGSWHPAADIVA---------------- 179 (369)
T ss_pred HHHHHHcCCeEEEeeCCCC-CCCHHHHHHHhcccC-----CcEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 7666432348888998665 488888877665321 445666678888999988888777
Q ss_pred chHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++. ++. |+.+|-+|+.+
T Consensus 180 ----l~~~~~~~~-------~lI~DE~y~~~ 199 (369)
T PRK08153 180 ----FIEALPETT-------LLVLDEAYCET 199 (369)
T ss_pred ----HHHhCCCCc-------EEEEeCchhhh
Confidence 5543 377 99999999754
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-06 Score=91.74 Aligned_cols=298 Identities=12% Similarity=0.034 Sum_probs=187.6
Q ss_pred HHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHH
Q psy11047 238 NWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKA 317 (943)
Q Consensus 238 ~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KA 317 (943)
+.|++++|++. .-+|.|+-+|-+..|.+-. .+ ...|++-..+||+..-|
T Consensus 68 ~dlaeFlg~D~------------~R~t~GARe~KfavMhal~----------~~---------gd~vV~D~~aHYttyvA 116 (382)
T COG1103 68 EDLAEFLGMDE------------VRVTAGAREAKFAVMHALC----------KE---------GDWVVVDSLAHYTTYVA 116 (382)
T ss_pred HHHHHHhCCce------------eeecccchhhHHHHHHHhc----------cC---------CCEEEEcCcchHHHHHH
Confidence 34899999975 4689999999887776421 11 22466788999999999
Q ss_pred HHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccC-CCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 318 GLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKH-LIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 318 a~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG-~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
+...+-++..||-. ....++++...+.|++-..++ ..|.+...|+..-+.|.+.|.+.+++
T Consensus 117 AEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~---------------- 180 (382)
T COG1103 117 AERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAK---------------- 180 (382)
T ss_pred HHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHH----------------
Confidence 95544488999854 478999999999999877765 67889999999999999999999999
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLG 474 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie 474 (943)
+|++||+ .+-+.+||... .+ |. + .+ . -
T Consensus 181 ----ic~e~gv-------PlllN~AYt~G-rm--pv--------------------------------s--~k----e-~ 207 (382)
T COG1103 181 ----ICREYGV-------PLLLNCAYTVG-RM--PV--------------------------------S--GK----E-I 207 (382)
T ss_pred ----HHHHcCC-------ceEeecceeec-cc--cc--------------------------------c--cc----c-c
Confidence 9999999 89999999876 33 11 0 01 1 2
Q ss_pred CeeEEEEcCCCccCccCcc-hhhhhcccCccccccCCCCcccccCcc-ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 475 RAQNFTIVPSSLLRVKNSG-ALHRTFNVEPLYLRHENSGLAIDYMHW-QIPLSKRFRALKLWFVIRNFGIKGLQKHIREI 552 (943)
Q Consensus 475 ~ADSItiDpHK~L~vr~~~-~L~~af~~~p~YL~~~~~g~~~d~~~~-tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~ 552 (943)
.||.|.-++||.+....+. .|.-........+... |..+.-... -+.|+-|... +-..|..+ .-..+.+++
T Consensus 208 g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~S--g~~~~~KEvellGCT~rGap--ivTlmASf--P~V~eRVkr- 280 (382)
T COG1103 208 GADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRS--GRAFPKKEVELLGCTVRGAP--IVTLMASF--PHVVERVKR- 280 (382)
T ss_pred CCCEEEecCccchhccCCeeEEeehhHHHHHHHhhc--ccccccceeeeecccccCch--HHHHHhcC--HHHHHHHHH-
Confidence 6899999999998822221 1100000111111111 110000011 1234422222 21122222 122344444
Q ss_pred HhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC--CCccE
Q psy11047 553 FSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA--RHLGM 630 (943)
Q Consensus 553 l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~--~~l~i 630 (943)
|+ +.++-|++|.+.+..+.+++-++. -.--+
T Consensus 281 -------------------Wd----------------------------eEv~kaR~fv~elEkigg~~qlG~rPk~HdL 313 (382)
T COG1103 281 -------------------WD----------------------------EEVEKARWFVAELEKIGGVKQLGERPKNHDL 313 (382)
T ss_pred -------------------HH----------------------------HHHHHHHHHHHHHHHhhhHHHhCCCCcccce
Confidence 11 147789999999999988888863 34556
Q ss_pred EEEEecCCChHHH-------HHHHHHhccCcEEEeecccCC-CcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 631 VVIRLLGENILTE-------KLLKRLNSKGRLHCVPASLRI-QGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 631 V~Fr~~g~n~l~~-------~Ll~~L~~~G~~~~s~t~~~g-~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+.|--+..+++.+ -|.+.|.++|..-+-+ | ...+.+++ +-.+.|+++..++++++++++
T Consensus 314 m~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI~~----G~Tk~~K~sv-yGl~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 314 MKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGIQP----GQTKYFKLSV-YGLSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred eeecCchHHHHHHhCcCCceeeHHHHHhcCcccccc----CceeEEEEEe-ecCCHHHHHHHHHHHHHHHHh
Confidence 7776654433322 2334455555422211 2 22455533 456889999999999998865
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-06 Score=97.15 Aligned_cols=126 Identities=8% Similarity=0.019 Sum_probs=86.4
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....||.. ++++.|.+. .+++++||.|+..+ +.. + .|| -.
T Consensus 47 ~~~p~~~~Le~~----la~l~g~~~------------al~~~SG~~Al~~~-l~~----l------~pG---------d~ 90 (380)
T PRK06176 47 SGNPTRFALEEL----IADLEGGVK------------GFAFASGLAGIHAV-FSL----F------QSG---------DH 90 (380)
T ss_pred CCChhHHHHHHH----HHHHhCCCC------------EEEECCHHHHHHHH-HHH----c------CCC---------CE
Confidence 456778888875 578888642 47778888776432 221 1 123 23
Q ss_pred EEecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|++++..+.+..... ..-+..+..++. .|+++++++++++ +.+|.....++.+|.+-|+++|++
T Consensus 91 Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~-----~d~e~l~~ai~~~------t~lV~lesP~Nptg~~~di~~I~~- 158 (380)
T PRK06176 91 VLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT-----SDLSQIKKAIKPN------TKALYLETPSNPLLKITDLAQCAS- 158 (380)
T ss_pred EEEcCCChhHHHHHHHHHHHhcCeEEEEcCC-----CCHHHHHHhcCcC------ceEEEEECCCCCCceecCHHHHHH-
Confidence 666666665544332 112235555554 3799999888654 567777777888999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|++|+..
T Consensus 159 -------------------la~~~gi-------~vivD~t~a~~ 176 (380)
T PRK06176 159 -------------------VAKDHGL-------LTIVDNTFATP 176 (380)
T ss_pred -------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999754
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-05 Score=89.68 Aligned_cols=138 Identities=9% Similarity=-0.072 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
..+..++.++|+++.|.+ ..+||+||++||..|+.++|...-+ .+. ..+-++.....
T Consensus 80 ~~~~~~la~~l~~~~~~~------------~v~~~~gg~eA~~~al~~a~~~~~~------~~~-----~~~~ii~~~~~ 136 (396)
T PRK02627 80 IEPQEELAEKLVELSGMD------------KVFFCNSGAEANEAAIKLARKYGHK------KGI-----EKPEIITAENS 136 (396)
T ss_pred CHHHHHHHHHHHhhcCCC------------EEEECCCcHHHHHHHHHHHHHHhcc------cCC-----CCCeEEEECCC
Confidence 445556667888887653 4789999999999999998754211 010 01234445555
Q ss_pred CchHHHHHHHHCCccEE---EEecCCCC----CcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccc-c---ccHHHhhh
Q psy11047 310 AHSSVEKAGLIGLVNMR---YIESDDKL----SLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLV-V---DSYCCLGT 378 (943)
Q Consensus 310 aHySv~KAa~LG~~~v~---~Vp~D~~g----rmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGa-I---DpL~eIa~ 378 (943)
-|-+..-+..++..... ..+..... .-|+++|++.+..+ +.+|+..-....+|. + +.+++|.+
T Consensus 137 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~vii~p~~~~~G~~~~~~~~l~~l~~ 210 (396)
T PRK02627 137 FHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDK------TAAVMLEPIQGEGGVNPADKEYLQALRE 210 (396)
T ss_pred cCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcCCC------eEEEEEecccCCCCCccCCHHHHHHHHH
Confidence 66444333333321111 11111110 11789999888432 445555443344452 2 23788888
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.+|.+|.++
T Consensus 211 --------------------l~~~~~~-------~lI~DE~~~g~ 228 (396)
T PRK02627 211 --------------------LCDENGI-------LLILDEVQTGM 228 (396)
T ss_pred --------------------HHHHcCC-------EEEEechhcCC
Confidence 9999999 99999999876
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-05 Score=88.75 Aligned_cols=159 Identities=13% Similarity=0.003 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
++.++..++....+. ...|.......++...+.+|+.+..|++-. ....++|+|+++++..++.+. +
T Consensus 44 ~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~--------~~~i~it~G~~~al~~~~~~~----~ 110 (384)
T PRK06348 44 DESIINAAFEDAKKG-HTRYTDSGGDVELIEEIIKYYSKNYDLSFK--------RNEIMATVGACHGMYLALQSI----L 110 (384)
T ss_pred CHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCC--------hhhEEEcCChHHHHHHHHHHh----c
Confidence 344554454433322 223433333457888888888887776532 136889999999987666542 1
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEe
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSG 361 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaT 361 (943)
.+| ..|++.+-++.....++..-+..++.++.+ +.+.+|+++|++.++.. +.+|+.+
T Consensus 111 ------~~g---------d~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~ 169 (384)
T PRK06348 111 ------DPG---------DEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSK------TKAIILN 169 (384)
T ss_pred ------CCC---------CEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcC------ccEEEEe
Confidence 122 236667777776777775333467788763 34579999999988643 3444555
Q ss_pred cCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 362 LALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 362 aGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
...+-+|.+-+ +++|.+ +|++||+ ++.+|.+|+.+
T Consensus 170 ~p~NPtG~~~s~~~~~~l~~--------------------~a~~~~~-------~ii~De~y~~~ 207 (384)
T PRK06348 170 SPNNPTGAVFSKETLEEIAK--------------------IAIEYDL-------FIISDEVYDGF 207 (384)
T ss_pred CCCCCCCcCCCHHHHHHHHH--------------------HHHHCCe-------EEEEecccccc
Confidence 56777888755 667777 8999999 99999999876
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-05 Score=89.45 Aligned_cols=119 Identities=13% Similarity=0.024 Sum_probs=80.7
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++++++.+|.+.+ ..++|+|+++++..++. +. ++ + +++. .-+....
T Consensus 62 ~lr~aia~~~~~~~~----------~I~it~Ga~~al~~~~~------l~------~~--------~-viv~-~P~y~~~ 109 (349)
T PRK07908 62 RARAAVAARHGRTPD----------EVLLLAGAAEGFALLAR------LR------PR--------R-AAVV-HPSFTEP 109 (349)
T ss_pred HHHHHHHHHhCcChh----------hEEECCCHHHHHHHHHh------cC------CC--------e-EEEe-CCCChHH
Confidence 456777888887654 68999999999765433 11 11 1 2222 2222223
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++..-+.+++.+|+++++.+|++++. .. +.+++.+..++.||.+-|.++|.+
T Consensus 110 ~~~~~~~G~~i~~v~~~~~~~~d~~~l~----~~------~~~i~l~np~NPTG~~~~~~~l~~---------------- 163 (349)
T PRK07908 110 EAALRAAGIPVHRVVLDPPFRLDPAAVP----DD------ADLVVIGNPTNPTSVLHPAEQLLA---------------- 163 (349)
T ss_pred HHHHHHcCCEEEeeccCcccCcChhHhc----cC------CCEEEEcCCCCCCCCCcCHHHHHH----------------
Confidence 3444433458888999877889988542 11 446667788899999999999998
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+ ++. |+.+|.+|+-+
T Consensus 164 ----l~~-~~~-------~iIvDe~y~~~ 180 (349)
T PRK07908 164 ----LRR-PGR-------ILVVDEAFADA 180 (349)
T ss_pred ----HHh-cCC-------EEEEECcchhh
Confidence 886 477 89999999754
|
|
| >KOG0628|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-08 Score=116.21 Aligned_cols=133 Identities=35% Similarity=0.475 Sum_probs=105.7
Q ss_pred CCCcCHHHHHHHHHHhhccCCCcEEEEEec----CCCccc--ccccHHHhhhh-ccccccccccccccCchH-----HHH
Q psy11047 333 KLSLRGDKLIEAIERDKKKHLIPFFIFSGL----ALPAFL--VVDSYCCLGTA-MIVKGLGFYKMKLQTNFP-----NFI 400 (943)
Q Consensus 333 ~grmD~daLe~aI~~d~~kG~~P~~VVaTa----GTT~tG--aIDpL~eIa~~-~~~~d~~~~~i~L~RrfR-----~ia 400 (943)
++-|++.+-.+.+..+.+++...-+-|..+ |+..+. .+||+.--.+. ....||+.|+++|+|||| ++.
T Consensus 285 r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~ 364 (511)
T KOG0628|consen 285 RYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVL 364 (511)
T ss_pred HHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhccCCCccccccccccchhhHHHHHHH
Confidence 456777777788888988886444444443 544443 56997755544 357999999999999999 678
Q ss_pred HHcCCCC------CccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccc
Q psy11047 401 LSYFPKF------QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP 465 (943)
Q Consensus 401 r~~Gl~~------~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~ 465 (943)
|-||+++ +++.+.-+...-..+.+.||+++++.+|+||||+++.|++|++|++++|.+|++++.+
T Consensus 365 R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~N~~ne~Ll~~in~~g~i~l~~ 435 (511)
T KOG0628|consen 365 RSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGDNEINEALLNRLNSSGRIHLVP 435 (511)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEeecCCcHHHHHHHHHHHhcCcEEEEE
Confidence 8899886 5677777777777777799999999999999999999999999999999999997654
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-05 Score=88.26 Aligned_cols=112 Identities=10% Similarity=-0.043 Sum_probs=76.4
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC-CCC-C-c
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD-DKL-S-L 336 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D-~~g-r-m 336 (943)
..++|+|||+++..++.+. + .+| + .|++++-.+......+...+.+++.++.+ ++| . .
T Consensus 90 ~i~~t~G~~~al~~~~~~l----~------~~g--------d-~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~ 150 (397)
T PRK07568 90 EILITNGGSEAILFAMMAI----C------DPG--------D-EILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLP 150 (397)
T ss_pred eEEEcCChHHHHHHHHHHh----c------CCC--------C-EEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCC
Confidence 5789999999987665432 1 122 1 35555544433344444334578888876 344 3 2
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchh
Q psy11047 337 RGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 413 (943)
Q Consensus 337 D~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lw 413 (943)
+.++|+++++.. +.+|+.+..++.+|.+-+ +++|++ +|+++|+ +
T Consensus 151 ~~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~~~~i~~--------------------~~~~~~~-------~ 197 (397)
T PRK07568 151 SKEEIEKLITPK------TKAILISNPGNPTGVVYTKEELEMLAE--------------------IAKKHDL-------F 197 (397)
T ss_pred CHHHHHHhcCcc------ceEEEEECCCCCCCccCCHHHHHHHHH--------------------HHHHCCc-------E
Confidence 578888887643 456777777888998865 777888 9999999 9
Q ss_pred hhHHhhhcCC
Q psy11047 414 QKFEALVLGD 423 (943)
Q Consensus 414 LHVDAA~GG~ 423 (943)
+++|.+|+.+
T Consensus 198 ii~De~y~~~ 207 (397)
T PRK07568 198 LISDEVYREF 207 (397)
T ss_pred EEEeccchhc
Confidence 9999999866
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.9e-06 Score=93.50 Aligned_cols=128 Identities=11% Similarity=0.003 Sum_probs=94.4
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
.+...++| +++++.+|.+ ..++|+|||.|+..++.+.- + .+| -.|+
T Consensus 30 ~~~~~~~e----~~la~~~g~~------------~~v~~~sgt~al~~~l~~~~---~------~~G---------d~Vi 75 (375)
T PRK11706 30 GGFTRRCQ----QWLEQRFGSA------------KVLLTPSCTAALEMAALLLD---I------QPG---------DEVI 75 (375)
T ss_pred CHHHHHHH----HHHHHHhCCC------------eEEEECCHHHHHHHHHHHhC---C------CCC---------CEEE
Confidence 44445554 4667777764 47899999999766654320 0 122 3478
Q ss_pred ecCCCchHHHHHHHHCCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 306 CSDQAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 306 ~S~~aHySv~KAa~LG~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
++..+|.+...++...+.+++.+++|.+ +.+|+++++++++.. +.+|+.+ ..+|..-++++|.+
T Consensus 76 v~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~------tk~i~~~---~~~G~~~~~~~i~~------ 140 (375)
T PRK11706 76 MPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITPK------TRAIVPV---HYAGVACEMDTIMA------ 140 (375)
T ss_pred ECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCCC------CeEEEEe---CCCCCccCHHHHHH------
Confidence 8899999998888654457888888765 489999999998653 4455544 34788888999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.+|+|++.+
T Consensus 141 --------------la~~~~i-------~vIeD~a~a~g 158 (375)
T PRK11706 141 --------------LAKKHNL-------FVVEDAAQGVM 158 (375)
T ss_pred --------------HHHHcCC-------EEEEECccccc
Confidence 9999999 99999999755
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-05 Score=89.36 Aligned_cols=136 Identities=12% Similarity=0.036 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
..++-..+.+|+++..|.+... ....++|+|++++...++.+. . .+| ..|++.+
T Consensus 69 ~~~lr~~ia~~~~~~~~~~~~~-------~~~vi~t~G~~~~l~~~~~~~----~------~~g---------d~vlv~~ 122 (383)
T TIGR03540 69 MLAYRQAVADWYKRRFGVELDP-------ETEVLSLIGSKEGIAHIPLAF----V------NPG---------DIVLVPD 122 (383)
T ss_pred CHHHHHHHHHHHHHhhCCCCCC-------CCeEEECCCcHHHHHHHHHHh----C------CCC---------CEEEEeC
Confidence 4567778888888887875320 013578899999876654431 1 122 2466666
Q ss_pred CCchHHHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVK 383 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~ 383 (943)
-++.....++...+.+++.+|.+++ ..+|++++++.+..+ +.+|+.+...+-+|.+-+ +++|.+
T Consensus 123 P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~i~~P~NPtG~~~~~~~~~~i~~----- 191 (383)
T TIGR03540 123 PGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKK------AKLMFINYPNNPTGAVAPLKFFKELVE----- 191 (383)
T ss_pred CCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhcccc------ceEEEEeCCCCCcCccCCHHHHHHHHH-----
Confidence 6665556666443458889998643 567999999887542 556666667888998877 667777
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+..
T Consensus 192 ---------------~a~~~~~-------~ii~De~y~~l 209 (383)
T TIGR03540 192 ---------------FAKEYNI-------IVCHDNAYSEI 209 (383)
T ss_pred ---------------HHHHcCE-------EEEEecchhhh
Confidence 9999999 99999999754
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-06 Score=96.48 Aligned_cols=121 Identities=12% Similarity=0.009 Sum_probs=79.4
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|..+ |++. .+ ..+++++||+|+..++.+- + .+| ..|
T Consensus 49 ~~p~~~~Le~~l----A~l~--~~-----------~~v~~~sG~~Ai~~~l~al----l------~~G---------d~V 92 (366)
T PRK07582 49 SNPTWRALEAAL----GELE--GA-----------EALVFPSGMAAITAVLRAL----L------RPG---------DTV 92 (366)
T ss_pred CCccHHHHHHHH----HHHc--CC-----------CEEEECCHHHHHHHHHHHh----c------CCC---------CEE
Confidence 456777777754 5555 22 4688899998876665431 1 122 246
Q ss_pred EecCCCchHHHHHHH--H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAGL--I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa~--L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
++++..++.....+. + .+.+++.++.++.+. .+.. .+.+|....-++.+|.+.|+++|++
T Consensus 93 l~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~--------~~~~------~t~lV~le~p~NPtg~v~di~~I~~-- 156 (366)
T PRK07582 93 VVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE--------AALA------GADLVLAETPSNPGLDVCDLAALAA-- 156 (366)
T ss_pred EEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH--------Hhcc------CceEEEEECCCCCCCCccCHHHHHH--
Confidence 667777766655441 2 234778887654321 1111 1456666666777888889999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
+|+++|+ ++.||++|+.
T Consensus 157 ------------------~a~~~g~-------~lvVD~t~~~ 173 (366)
T PRK07582 157 ------------------AAHAAGA-------LLVVDNTTAT 173 (366)
T ss_pred ------------------HHHHcCC-------EEEEECCCCC
Confidence 9999999 9999999864
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=9e-06 Score=92.02 Aligned_cols=121 Identities=9% Similarity=-0.120 Sum_probs=74.5
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEE---EecCCCCC-
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRY---IESDDKLS- 335 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~---Vp~D~~gr- 335 (943)
..+|++|||+||..|+.+||.+... +|.+ ..+-++.....-|-+..-+..++...... .|..++..
T Consensus 90 ~v~~~~sGseA~~~al~~ar~~~~~------~G~~----~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
T PRK01278 90 KVFFTNSGAEAVECAIKTARRYHYG------KGHP----ERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQ 159 (389)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHHh------cCCC----CCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceE
Confidence 4799999999999999999875322 2311 02235555666666555454443321110 11111111
Q ss_pred ---cCHHHHHHHHHHhhccCCCcEEEEEecCCCccc-cc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCC
Q psy11047 336 ---LRGDKLIEAIERDKKKHLIPFFIFSGLALPAFL-VV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQ 408 (943)
Q Consensus 336 ---mD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tG-aI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~ 408 (943)
.|++++++.|..+ +.+|+..--....| .+ +.+++|.+ +|++||+
T Consensus 160 ~~~~d~~~l~~~l~~~------~~avivep~~~~~G~~~~~~~~l~~l~~--------------------l~~~~g~--- 210 (389)
T PRK01278 160 VPFGDIEALKAAITPN------TAAILIEPIQGEGGIRPAPDEFLKGLRQ--------------------LCDENGL--- 210 (389)
T ss_pred eCCCCHHHHHHhhCCC------eEEEEEecccCCCCCcCCCHHHHHHHHH--------------------HHHHcCC---
Confidence 4789999888642 44555543333334 22 45888888 9999999
Q ss_pred ccchhhhHHhhhcCC
Q psy11047 409 SVRLAQKFEALVLGD 423 (943)
Q Consensus 409 ~l~lwLHVDAA~GG~ 423 (943)
|+.+|.+|.|+
T Consensus 211 ----~lI~DEv~~g~ 221 (389)
T PRK01278 211 ----LLIFDEVQCGM 221 (389)
T ss_pred ----EEEEeccccCC
Confidence 99999999876
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.7e-05 Score=87.19 Aligned_cols=125 Identities=12% Similarity=0.039 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
..+++++|+.+|.+.+ ..++|+|++++...++.+ +. + ++ +++.+ -+...
T Consensus 58 ~~lr~~ia~~~~~~~~----------~i~it~Ga~~~l~~~~~~-----l~------~--------g~-viv~~-P~y~~ 106 (356)
T PRK08056 58 RHLHQALARHHQVPAS----------WILAGNGETESIFAVVSG-----LK------P--------RR-AMIVT-PGFAE 106 (356)
T ss_pred HHHHHHHHHHhCcChh----------hEEECCCHHHHHHHHHHH-----hC------C--------CC-EEEeC-CCcHH
Confidence 3567788888888654 678999999987655442 11 1 12 23333 22223
Q ss_pred HHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFY 388 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~ 388 (943)
....+..-+.+++.+|.++. ..+| +++.+.+.. .+.+|+.+...+-||.+-+ +++|++
T Consensus 107 ~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~------~~k~v~l~~p~NPTG~~~~~~~~~~i~~---------- 169 (356)
T PRK08056 107 YRRALQQVGCEIRRYSLREADGWQLT-DAILEALTP------DLDCLFLCTPNNPTGLLPERQLLQAIAE---------- 169 (356)
T ss_pred HHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccC------CCCEEEEeCCcCCCCCCCCHHHHHHHHH----------
Confidence 34445444458888888643 3444 344444432 2456667788899999877 777788
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ |+-+|.+|..+
T Consensus 170 ----------~a~~~~~-------~ii~De~y~~~ 187 (356)
T PRK08056 170 ----------RCKSLNI-------ALILDEAFIDF 187 (356)
T ss_pred ----------HHHhcCC-------EEEEecchhcc
Confidence 9999999 99999999765
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.9e-06 Score=94.73 Aligned_cols=126 Identities=10% Similarity=0.065 Sum_probs=86.7
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....+|.. +|++.|.+. .+++++|+.++..++ . .+ .+| -.
T Consensus 47 ~~~p~~~~Le~~----lA~l~g~~~------------~~~~~sG~aai~~~~-~----~l------~~G---------d~ 90 (377)
T PRK07671 47 TGNPTRAALEEL----IAVLEGGHA------------GFAFGSGMAAITAVM-M----LF------SSG---------DH 90 (377)
T ss_pred CCChHHHHHHHH----HHHHhCCCc------------eEEeCCHHHHHHHHH-H----Hh------CCC---------CE
Confidence 346777777764 578888642 477888876654332 1 11 122 23
Q ss_pred EEecCCCchHHHHHH-H-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAG-L-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa-~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++...|.+..+.. . + .+..++.++. .|+++++++|+++ +.+|+...-++.+|.+.|+++|.+
T Consensus 91 Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~-----~d~~~l~~ai~~~------tklV~le~P~NPtg~~~dl~~I~~- 158 (377)
T PRK07671 91 VILTDDVYGGTYRVMTKVLNRFGIEHTFVDT-----SNLEEVEEAIRPN------TKAIYVETPTNPLLKITDIKKIST- 158 (377)
T ss_pred EEECCCccchHHHHHHHHHhcCCeEEEEECC-----CCHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHH-
Confidence 667777776554432 1 2 2235666654 3789999988754 567777777888899999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|.+|+..
T Consensus 159 -------------------la~~~g~-------~lvvD~a~~~~ 176 (377)
T PRK07671 159 -------------------IAKEKGL-------LTIVDNTFMTP 176 (377)
T ss_pred -------------------HHHHcCC-------EEEEECCCCcc
Confidence 9999999 99999999754
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.7e-06 Score=90.33 Aligned_cols=118 Identities=11% Similarity=-0.081 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
..+.+++++++|.+.+ ..++|+|++++...+ ..+ +. + . .|++.+-++.+
T Consensus 50 ~~lr~~la~~~~~~~~----------~i~~t~G~~~~i~~~-~~~----l~------~---------g-~vl~~~p~y~~ 98 (330)
T TIGR01140 50 DELRAAAAAYYGLPAA----------SVLPVNGAQEAIYLL-PRL----LA------P---------G-RVLVLAPTYSE 98 (330)
T ss_pred HHHHHHHHHHhCCChh----------hEEECCCHHHHHHHH-HHH----hC------C---------C-eEEEeCCCcHH
Confidence 4566788888887643 578999999886542 221 11 1 1 25556667777
Q ss_pred HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i 390 (943)
....+...+.+++.++ |++++++.+.+ +.+++.+...+.+|.+-+ +++|.+
T Consensus 99 ~~~~~~~~g~~~~~~~-------d~~~l~~~~~~-------~~~v~i~~p~NPtG~~~~~~~~~~l~~------------ 152 (330)
T TIGR01140 99 YARAWRAAGHEVVELP-------DLDRLPAALEE-------LDVLVLCNPNNPTGRLIPPETLLALAA------------ 152 (330)
T ss_pred HHHHHHHcCCEEEEeC-------CHHHHHhhccc-------CCEEEEeCCCCCCCCCCCHHHHHHHHH------------
Confidence 7776654444666666 78888887732 235666777889999877 555666
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|.+|+.+
T Consensus 153 --------~a~~~~~-------~ii~De~y~~~ 170 (330)
T TIGR01140 153 --------RLRARGG-------WLVVDEAFIDF 170 (330)
T ss_pred --------HhHhcCC-------EEEEECccccc
Confidence 8899999 99999999866
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.8e-05 Score=86.42 Aligned_cols=137 Identities=10% Similarity=0.053 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec
Q psy11047 228 ACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307 (943)
Q Consensus 228 aateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S 307 (943)
...++...+.+|+.+.+|.+-.. ....++|+|++++...++.+. + .+| -.|+++
T Consensus 74 G~~~lr~aia~~~~~~~~~~~~~-------~~~i~vt~G~~~al~~~~~~~----~------~~g---------d~Vlv~ 127 (394)
T PRK05942 74 GTASFRQAITDWYHRRYGVELDP-------DSEALPLLGSKEGLTHLALAY----V------NPG---------DVVLVP 127 (394)
T ss_pred CCHHHHHHHHHHHHHHHCCCcCC-------CCeEEEccChHHHHHHHHHHh----C------CCC---------CEEEEc
Confidence 34678888999998888865320 013678999999987665431 1 122 236667
Q ss_pred CCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccc
Q psy11047 308 DQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIV 382 (943)
Q Consensus 308 ~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~ 382 (943)
+-++.....++...+.+++.++.+. .+.+|+++|++.+... +.+++.+...+-||.+-+ +++|.+
T Consensus 128 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~P~NPtG~~~s~~~~~~i~~---- 197 (394)
T PRK05942 128 SPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQ------AKILYFNYPSNPTTATAPREFFEEIVA---- 197 (394)
T ss_pred CCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhcccc------ceEEEEcCCCCCCCCcCCHHHHHHHHH----
Confidence 7777766666644334788888864 3579999999988642 556666667888999877 667777
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+-+
T Consensus 198 ----------------~a~~~~~-------~iI~De~y~~~ 215 (394)
T PRK05942 198 ----------------FARKYEI-------MLVHDLCYAEL 215 (394)
T ss_pred ----------------HHHHcCe-------EEEEeccchhh
Confidence 8999999 99999999755
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-05 Score=87.71 Aligned_cols=128 Identities=9% Similarity=-0.021 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
.+++..+.+++++..+.+ ..+|+++|++||..|+..||.. +| .+-++.....
T Consensus 70 ~~~~~~la~~l~~~~~~~------------~~~~~~sG~~a~~~A~~~a~~~---------~g-------~~~vi~~~~~ 121 (377)
T PRK02936 70 NSLQEEVASLLAENSAGD------------LVFFCNSGAEANEAALKLARKH---------TG-------KSKIVTFEQS 121 (377)
T ss_pred CHHHHHHHHHHHhcCCCC------------EEEEeCCcHHHHHHHHHHHHHh---------cC-------CCeEEEECCC
Confidence 566667777777765432 4789999999999999988743 11 2234555566
Q ss_pred CchHHHHHHHH-CCc-----------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc----cH
Q psy11047 310 AHSSVEKAGLI-GLV-----------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD----SY 373 (943)
Q Consensus 310 aHySv~KAa~L-G~~-----------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID----pL 373 (943)
-|-+..-+..+ |.. .+..++.+ |.++|++.+..+ +.+|+........|.+. .+
T Consensus 122 ~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~~------~~~ii~e~i~~~~G~~~~~~~~l 190 (377)
T PRK02936 122 FHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFN-----DIKALKEVMNEE------VAAVMLEVVQGEGGVIPADPAFL 190 (377)
T ss_pred cCCCcHHhhhccCCccccccCCCCCCCceEeCCC-----CHHHHHHhccCC------eEEEEEecccCCCCCccCCHHHH
Confidence 77655444432 211 12223322 688888887533 34455444344445443 38
Q ss_pred HHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 374 CCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 374 ~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++|.+ +|++||+ ++.+|.+|.|+
T Consensus 191 ~~l~~--------------------l~~~~~~-------~lI~DEv~~g~ 213 (377)
T PRK02936 191 QEVQT--------------------LCKKFGA-------LLIIDEVQTGI 213 (377)
T ss_pred HHHHH--------------------HHHHcCC-------EEEEeccccCC
Confidence 88888 9999999 99999999765
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-05 Score=91.15 Aligned_cols=138 Identities=5% Similarity=-0.065 Sum_probs=94.2
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
.+...++...+.+|+.+-.|++-. ....++|+|++++...++.+- . .|| + .|+
T Consensus 107 ~~G~~~lR~aiA~~~~~~~~~~~~--------~~~I~it~G~~~al~~~~~~l----~------~pG--------d-~Vl 159 (462)
T PLN02187 107 GAGILPARRAVADYMNRDLPHKLT--------PEDIFLTAGCNQGIEIVFESL----A------RPN--------A-NIL 159 (462)
T ss_pred CCChHHHHHHHHHHHHHhcCCCCC--------cccEEEeCCHHHHHHHHHHHh----c------CCC--------C-EEE
Confidence 333455666666777666555322 136889999999987766542 1 133 1 245
Q ss_pred ecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhc
Q psy11047 306 CSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAM 380 (943)
Q Consensus 306 ~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~ 380 (943)
+.+-+.......+..-+.+++.++.. +++.+|+++|+++++.. +.+++.+..++-+|.+-+ +++|.+
T Consensus 160 v~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~------~~~v~i~nP~NPTG~v~s~e~l~~i~~-- 231 (462)
T PLN02187 160 LPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADEN------TVAMVVINPNNPCGNVYSHDHLKKVAE-- 231 (462)
T ss_pred EeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCC------cEEEEEeCCCCCCCCccCHHHHHHHHH--
Confidence 55555555555554433477788763 56899999999887543 556777777899999866 677777
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+-+|.+|+..
T Consensus 232 ------------------~a~~~~i-------~iI~DE~Y~~l 249 (462)
T PLN02187 232 ------------------TARKLGI-------MVISDEVYDRT 249 (462)
T ss_pred ------------------HHHHCCC-------EEEEecccccc
Confidence 8999999 99999999865
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.7e-06 Score=95.01 Aligned_cols=126 Identities=8% Similarity=-0.040 Sum_probs=89.3
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...+||.. +|++.|.+. .++|+||++|+..++.+.- .+| -.|
T Consensus 74 ~~Pt~~~LE~~----lA~l~g~~~------------~l~~~sG~~Ai~~al~al~----------~~G---------D~V 118 (418)
T PLN02242 74 FNPTVLNLGRQ----MAALEGTEA------------AYCTASGMSAISSVLLQLC----------SSG---------GHV 118 (418)
T ss_pred CChhHHHHHHH----HHHHhCCCe------------EEEEccHHHHHHHHHHHHh----------CCC---------CEE
Confidence 46888888874 578888753 5799999999988876531 122 235
Q ss_pred EecCCCchHHHHHH-----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 305 YCSDQAHSSVEKAG-----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 305 ~~S~~aHySv~KAa-----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
+++...+......+ .+-+..++.++.+ |+++++++|+.. .+.+|+...-++.+|.+-|+++|++
T Consensus 119 l~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~-----d~e~l~~~i~~~-----~tklV~lesp~NPtG~v~dl~~I~~- 187 (418)
T PLN02242 119 VASNTLYGGTHALLAHFLPRKCNITTTFVDIT-----DLEAVKKAVVPG-----KTKVLYFESISNPTLTVADIPELAR- 187 (418)
T ss_pred EEcCCcHHHHHHHHHHhhhhccCceEEEcCCC-----CHHHHHHhcCcC-----CCEEEEEecCCCCCCcccCHHHHHH-
Confidence 56666544444433 1122345545442 789999888652 2567777778888999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
+|++||+ |+++|.+|+.
T Consensus 188 -------------------la~~~gi-------~livDea~~~ 204 (418)
T PLN02242 188 -------------------IAHEKGV-------TVVVDNTFAP 204 (418)
T ss_pred -------------------HHHHhCC-------EEEEECCCCc
Confidence 9999999 9999999953
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.2e-05 Score=88.92 Aligned_cols=138 Identities=9% Similarity=-0.025 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCC-ccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 227 PACTELEIITMNWLGKMIGLP-EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p-~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
....++-..+.+|+.+..|+. -.. ....++|+|++++...++.+- . .+| + .|+
T Consensus 81 ~G~~~lr~aia~~~~~~~g~~~~~~-------~~~I~it~Gs~~al~~~~~~~----~------~~g--------d-~Vl 134 (410)
T PRK06290 81 NGIQEFKEAAARYMEKVFGVKDIDP-------VTEVIHSIGSKPALAMLPSCF----I------NPG--------D-VTL 134 (410)
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCC-------cceEEEccCHHHHHHHHHHHh----C------CCC--------C-EEE
Confidence 445667777888888777764 210 015889999999976655431 1 122 2 344
Q ss_pred ecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhc
Q psy11047 306 CSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAM 380 (943)
Q Consensus 306 ~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~ 380 (943)
+..-++......+..-+.+++.++.++ .+.+|++++++.+... +.+|+.+-..+-||.+-+ +++|.+
T Consensus 135 v~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~NPTG~v~s~e~l~~l~~-- 206 (410)
T PRK06290 135 MTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEK------AKLLYLNYPNNPTGAVATKEFYEEVVD-- 206 (410)
T ss_pred EeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhccc------ceEEEEECCCCCCCcCCCHHHHHHHHH--
Confidence 445455445555544334888999875 4577999999887542 556777777899999877 456666
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+..
T Consensus 207 ------------------la~~~~~-------~iI~DEaY~~~ 224 (410)
T PRK06290 207 ------------------FAKENNI-------IVVQDAAYAAL 224 (410)
T ss_pred ------------------HHHHcCe-------EEEEecchhhc
Confidence 8999999 99999999865
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-06 Score=98.05 Aligned_cols=127 Identities=8% Similarity=-0.016 Sum_probs=84.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
....|...++|+.+ |++.|.. ..++++||++|+..++. + ++ +| +
T Consensus 50 R~~~p~~~~le~~l----A~leg~~------------~~v~~~sG~aAi~~~l~-~----l~------~G--------D- 93 (364)
T PRK07269 50 RTKNPTRAKLEETL----AAIESAD------------YALATSSGMSAIVLAFS-V----FP------VG--------S- 93 (364)
T ss_pred CCCCccHHHHHHHH----HHHhCCC------------eEEEeCCHHHHHHHHHH-H----hC------CC--------C-
Confidence 34568888888755 5666642 57999999999887763 2 11 23 2
Q ss_pred EEEecCCCchHHHHHH-HH-CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 303 VAYCSDQAHSSVEKAG-LI-GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 303 vV~~S~~aHySv~KAa-~L-G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
.|+++...+-....-. .. -...+ .. .+.+|+++++++|+++ +.+|+....++.+|.+-|+++|++
T Consensus 94 ~VI~~~~~yg~~~~~~~~~~~~~~~---~~--~~~~d~~~l~~~i~~~------TklV~lesP~NPtg~~~di~~I~~-- 160 (364)
T PRK07269 94 KVVAVRDLYGGSFRWFNQQEKEGRF---HF--TYANTEEELIAAIEED------TDIVYIETPTNPLMVEFDIEKVAK-- 160 (364)
T ss_pred EEEEecCCcCchHHHHHHHHhcCcE---EE--EecCCHHHHHHhcCcC------ceEEEEECCCCCCCeeeCHHHHHH--
Confidence 2444444332222211 11 11111 11 1235789999998754 568888888888999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++-+|.+|+..
T Consensus 161 ------------------la~~~gi-------~vvvD~t~~~~ 178 (364)
T PRK07269 161 ------------------LAHAKGA-------KVIVDNTFYSP 178 (364)
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999998654
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-05 Score=91.16 Aligned_cols=131 Identities=13% Similarity=-0.013 Sum_probs=84.2
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
+..+.|+++.+.+ ...|+++||+||..||.+||.+.... .|.. ...+-+|.+...-|-+.
T Consensus 86 ~l~~~l~~~~~~~------------~~~~~~SGseA~e~Alk~a~~~~~~~-----~g~~---~~r~~ii~~~~~~HG~~ 145 (396)
T PRK04073 86 PWYEKVAKLTGKD------------MVLPMNTGAEAVETAIKAARRWAYDV-----KGVE---PNKAEIIACEGNFHGRT 145 (396)
T ss_pred HHHHHHHhcCCCC------------eEEEcCChHHHHHHHHHHHHHHhhhc-----cCCC---CCCCEEEEECCCcCCCC
Confidence 3445566666542 46899999999999999998652210 1110 00223455556667655
Q ss_pred HHHHHHCCc------------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhhh
Q psy11047 315 EKAGLIGLV------------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLGT 378 (943)
Q Consensus 315 ~KAa~LG~~------------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~ 378 (943)
.-++.+... .+..++.+ |+++|++.+... +.+|+..-..+.+|.+-| +++|.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~~~------~~~viiep~~~~~G~~~~~~~~l~~l~~ 214 (396)
T PRK04073 146 MAAVSLSSEEEYKRGFGPMLPGIKKIPYG-----DLEALKAAITPN------TAAFLVEPIQGEAGINIPPEGFLKAARE 214 (396)
T ss_pred HHHHhhcCCcccccCCCCCCCCceEeCCC-----CHHHHHHhcccC------eEEEEEcCccCCCCCccCCHHHHHHHHH
Confidence 544433211 12333332 688888887532 566676666667787744 788888
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.+|.+|.|+
T Consensus 215 --------------------l~~~~g~-------lli~DEv~~g~ 232 (396)
T PRK04073 215 --------------------LCKEENV-------LFIADEIQTGL 232 (396)
T ss_pred --------------------HHHHcCC-------EEEEecchhCC
Confidence 9999999 99999999876
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.1e-05 Score=87.78 Aligned_cols=159 Identities=13% Similarity=0.003 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 206 SLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 206 silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
..+.+.+...+..+...|...+...+++..+.+|+.+..|.+-.. ....++|+|+|+|+..++.+. +
T Consensus 44 ~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~-------~~~I~~t~G~~~al~~~~~~l----~-- 110 (387)
T PRK07683 44 SHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSP-------ESEIIVTIGASEAIDIAFRTI----L-- 110 (387)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCcEEEeCChHHHHHHHHHHh----C--
Confidence 344455555555444445444556788888888888777764220 125899999999987665431 1
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLAL 364 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGT 364 (943)
.+| ..|+++.-+......++..-+.+++.++.++ ...+|.+++++.+... +.+++.+...
T Consensus 111 ----~~g---------d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~i~i~~p~ 171 (387)
T PRK07683 111 ----EPG---------TEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEK------TRCVVLPYPS 171 (387)
T ss_pred ----CCC---------CEEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcC------ceEEEEeCCC
Confidence 122 2355555544445555543334788888865 4567889999887643 4566667778
Q ss_pred Cccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 365 PAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 365 T~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+-+|.+-+ +++|.+ +|+++|+ ++.+|.+|+.+
T Consensus 172 NPtG~~~s~~~~~~l~~--------------------~~~~~~~-------~ii~De~y~~~ 206 (387)
T PRK07683 172 NPTGVTLSKEELQDIAD--------------------VLKDKNI-------FVLSDEIYSEL 206 (387)
T ss_pred CCCCcCCCHHHHHHHHH--------------------HHHHcCe-------EEEEecccccc
Confidence 88998744 777787 9999999 99999999865
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-05 Score=89.80 Aligned_cols=115 Identities=6% Similarity=-0.073 Sum_probs=73.6
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEE------EEecCCC
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMR------YIESDDK 333 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~------~Vp~D~~ 333 (943)
-.+|+++|||||..|+..||... + .+-+|.....-|-+...++.++..... .++....
T Consensus 86 ~~~~~~SGseA~~~Al~~ar~~~---------~-------~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (375)
T PRK04260 86 LAFFCNSGAEANEAAIKIARKAT---------G-------KQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSY 149 (375)
T ss_pred EEEEcCccHHHHHHHHHHHHHhc---------C-------CCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEE
Confidence 36899999999999999998531 1 223555667788777666543221100 0110000
Q ss_pred C-CcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCC
Q psy11047 334 L-SLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQ 408 (943)
Q Consensus 334 g-rmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~ 408 (943)
. ..|.+++++.+..+ +.+|+.......+|.+-| +.++.+ +|+++|+
T Consensus 150 ~~~~dl~~l~~~l~~~------~a~vi~e~v~~~~G~~~~~~~~l~~~~~--------------------l~~~~~~--- 200 (375)
T PRK04260 150 AIFNDLNSVKALVNKN------TAAVMLELVQGESGVLPADKDFVKALAD--------------------YCQETGI--- 200 (375)
T ss_pred eCCCCHHHHHHhcCCC------eEEEEECCeECCCCCcCCCHHHHHHHHH--------------------HHHHcCC---
Confidence 0 23788888877532 345555444445566533 888888 9999999
Q ss_pred ccchhhhHHhhhcCC
Q psy11047 409 SVRLAQKFEALVLGD 423 (943)
Q Consensus 409 ~l~lwLHVDAA~GG~ 423 (943)
++++|.++.|+
T Consensus 201 ----~~i~De~~~g~ 211 (375)
T PRK04260 201 ----LLIVDEVQTGM 211 (375)
T ss_pred ----EEEEechhhCC
Confidence 99999999765
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.4e-05 Score=88.29 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=42.4
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAEL 699 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~ 699 (943)
....+.+.|.++|. ++.+. +..++|+..+..+|+++|+++++.|+++...-+.++
T Consensus 395 ~a~~~~~~L~e~GV-~v~p~---~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~~~~~ 449 (474)
T PLN02624 395 SAYDVCLKLKERGL-LAKPT---HDTIIRLAPPLSISEDELQECSKALSDVLEHDLPKL 449 (474)
T ss_pred HHHHHHHHHHhCCe-EEecC---CCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678888888885 55543 457899988889999999999999988866655554
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.3e-05 Score=88.21 Aligned_cols=129 Identities=11% Similarity=-0.062 Sum_probs=80.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+.|+++++.+ ...|+++||+||..|+.+||.+...+. .++ ++-+|.....-|-+.
T Consensus 81 ~la~~L~~~~~~~------------~~~f~~SGseA~e~Alk~ar~~~~~~~---~~~-------r~~ii~~~~~yHG~~ 138 (397)
T TIGR03246 81 RLAKKLVDATFAD------------KVFFCNSGAEANEAALKLARRYALDKH---GAD-------KSEIVAFKNSFHGRT 138 (397)
T ss_pred HHHHHHHhhCCCC------------EEEEeCCcHHHHHHHHHHHHHHHHhcC---CCC-------CCEEEEECCCcCCcc
Confidence 3444556666542 468999999999999999997532110 011 233455566677765
Q ss_pred HHHHHHCCc------------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc----ccHHHhhh
Q psy11047 315 EKAGLIGLV------------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV----DSYCCLGT 378 (943)
Q Consensus 315 ~KAa~LG~~------------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI----DpL~eIa~ 378 (943)
.-+..++.. .+..+|-+ |+++|++.|.+. +.+|+..-.....|.+ +.+++|.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~aavi~Epi~~~~G~~~~~~~~l~~l~~ 207 (397)
T TIGR03246 139 LFTVSVGGQPKYSQGFAPLPGGIKHAPYN-----DLAAAKALISDK------TCAVIVEPIQGEGGVVPADPAFLKGLRE 207 (397)
T ss_pred HHHHHhcCCcccccCCCCCCCceEEeCCC-----CHHHHHHHhccC------eEEEEEecccCCCCCcCCCHHHHHHHHH
Confidence 544333221 23333332 689999888532 4455554333333433 33888888
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.+|-++-|+
T Consensus 208 --------------------lc~~~g~-------llI~DEv~tG~ 225 (397)
T TIGR03246 208 --------------------LCDRHNA-------LLIFDEVQTGV 225 (397)
T ss_pred --------------------HHHHcCC-------EEEEechhhcC
Confidence 9999999 99999998665
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-06 Score=99.93 Aligned_cols=145 Identities=12% Similarity=-0.008 Sum_probs=89.3
Q ss_pred cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhc
Q psy11047 219 LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEI 298 (943)
Q Consensus 219 n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i 298 (943)
.-..|..+|...+||..+ +++||++. .++|..|+.++.++..+.- + .+| +++
T Consensus 66 GDD~Y~gdpSv~~Lee~v----ael~G~E~------------alpthqGRgaE~Il~~~~~----~-----~~g---~e~ 117 (467)
T TIGR02617 66 GDEAYSGSRSYYALAESV----KNIFGYQY------------TIPTHQGRGAEQIYIPVLI----K-----KRE---QEK 117 (467)
T ss_pred CCcccccCchHHHHHHHH----HHHhCCce------------EEECCCCchHHHHHHHhhc----c-----ccc---ccc
Confidence 335699999999999866 77899863 6899999999987765421 1 011 110
Q ss_pred C-CceEEEecCCCchHHHHHH-HHCCccEEEEe----------cCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC-
Q psy11047 299 N-SRLVAYCSDQAHSSVEKAG-LIGLVNMRYIE----------SDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP- 365 (943)
Q Consensus 299 ~-~~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp----------~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT- 365 (943)
. .....+++...|+-..++. .+++...+.++ .+.+|.||++.|+++|++..... +.++..++.++
T Consensus 118 g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~--i~~v~~tlt~N~ 195 (467)
T TIGR02617 118 GLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNN--VPYIVATITCNS 195 (467)
T ss_pred cccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCC--ceeeeeeEEEec
Confidence 0 0000133444555443443 46665555543 22479999999999998642211 22333333222
Q ss_pred ccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhh
Q psy11047 366 AFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 420 (943)
Q Consensus 366 ~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~ 420 (943)
.-|.+-| +.++.+ +|++||+ .+|+|||-
T Consensus 196 ~GGqpvslenlr~V~~--------------------la~~~GI-------plhLDgAR 226 (467)
T TIGR02617 196 AGGQPVSLANLKAVYE--------------------IAKKYDI-------PVVMDSAR 226 (467)
T ss_pred CCCEEeCHHHHHHHHH--------------------HHHHcCC-------cEEEEhHH
Confidence 2354544 556666 9999999 99999995
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-05 Score=98.65 Aligned_cols=79 Identities=10% Similarity=-0.040 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHH
Q psy11047 604 VRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 604 ~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ 683 (943)
+.+|.++++.|.+ .+++++.++-++.+.+++...+ .+++.+++.++|.. +.. .....+++++.-.+|.+||+.
T Consensus 348 ~~~a~~l~~~L~~-~G~~~~~~~fF~~~~v~~~~~~--~~~i~~~~~~~gi~-l~~---~~~~~i~~s~~E~~t~~di~~ 420 (939)
T TIGR00461 348 HSLTSILANGLEN-DPHELINKTWFDTLTVKVGNGI--SSELLKAAEEFNIN-LRA---VDTTTVGIALDETTTKADVEN 420 (939)
T ss_pred HHHHHHHHHHHHh-CCCcccCCCccceEEEEeCCCC--HHHHHHHHHHCCCe-eee---cCCCEEEEEeecCCCHHHHHH
Confidence 5678888888888 7999999888999999884222 57888899888875 332 233579999999999999999
Q ss_pred HHHHHH
Q psy11047 684 DWNEIR 689 (943)
Q Consensus 684 ll~~I~ 689 (943)
+++.+.
T Consensus 421 l~~~~~ 426 (939)
T TIGR00461 421 LLKVFD 426 (939)
T ss_pred HHHHhc
Confidence 999985
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.5e-05 Score=87.19 Aligned_cols=121 Identities=8% Similarity=-0.062 Sum_probs=83.5
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+.+.+++++|.+ ..+++++|+.|++.++.+ +. +| -.|++|...|+++
T Consensus 131 ~~e~~lA~l~Gae------------~a~vv~sgtaAl~l~l~~-----l~------~G---------deVIvs~~e~~~~ 178 (464)
T PRK04311 131 ALAALLCALTGAE------------DALVVNNNAAAVLLALNA-----LA------AG---------KEVIVSRGELVEI 178 (464)
T ss_pred HHHHHHHHHhCCC------------eEEEECCHHHHHHHHHHH-----hC------CC---------CEEEEcchhhhhc
Confidence 5667889999975 357889999998777632 11 12 2367788777743
Q ss_pred ------HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCc--cc--ccccHHHhhhhccccc
Q psy11047 315 ------EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPA--FL--VVDSYCCLGTAMIVKG 384 (943)
Q Consensus 315 ------~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~--tG--aIDpL~eIa~~~~~~d 384 (943)
...+...+..++.++. ++..++++++++|+++ +.+|+.++-++. +| ..-|+++|++
T Consensus 179 ggs~~i~~~~~~~G~~l~~v~~--~~~t~~~dle~aI~~~------TklV~~vh~sN~~i~G~~~~~dl~eI~~------ 244 (464)
T PRK04311 179 GGAFRIPDVMRQAGARLVEVGT--TNRTHLRDYEQAINEN------TALLLKVHTSNYRIEGFTKEVSLAELAA------ 244 (464)
T ss_pred CcchhhHHHHHHCCcEEEEECC--CCCCCHHHHHHhcCcc------CeEEEEEcCCCccccccCCcCCHHHHHH------
Confidence 2233333446777765 3456799999999765 456666665553 44 5568999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
+|++||+ .+.+|++.|.
T Consensus 245 --------------lak~~gi-------~vivD~gsG~ 261 (464)
T PRK04311 245 --------------LGKEHGL-------PVVYDLGSGS 261 (464)
T ss_pred --------------HHHHcCC-------eEEEECCCcc
Confidence 9999999 9999997554
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.6e-05 Score=86.25 Aligned_cols=126 Identities=10% Similarity=-0.069 Sum_probs=90.4
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+++.+++.+|++.+ ..++|+|++++...++.+. . .+| -.|++++-+|...
T Consensus 82 ~Lr~aia~~~~v~~e----------~I~it~Gs~~ai~~~~~~l----~------~~g---------d~Vli~~P~y~~~ 132 (370)
T PRK09105 82 DLRTLFAAQEGLPAD----------HVMAYAGSSEPLNYAVLAF----T------SPT---------AGLVTADPTYEAG 132 (370)
T ss_pred HHHHHHHHHhCcChh----------hEEEcCChHHHHHHHHHHH----c------CCC---------CEEEEeCCChHHH
Confidence 355567788888754 6889999999987766542 1 122 2356667677777
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++..-+.+++.++.++++.+|++++++.. . .+.+++.+...+.+|.+-+.+++.+
T Consensus 133 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~-~------~~~~v~l~nP~NPTG~~~~~~~l~~---------------- 189 (370)
T PRK09105 133 WRAADAQGAPVAKVPLRADGAHDVKAMLAAD-P------NAGLIYICNPNNPTGTVTPRADIEW---------------- 189 (370)
T ss_pred HHHHHHcCCeEEEecCCCCCCCCHHHHHhcC-C------CCCEEEEeCCCCCCCcCcCHHHHHH----------------
Confidence 7777544458889999888899999987652 1 1446666778999999999888877
Q ss_pred chHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++. +|. |+.+|.+|..+
T Consensus 190 ----l~~~~~~~~-------~lIvDEaY~~f 209 (370)
T PRK09105 190 ----LLANKPAGS-------VLLVDEAYIHF 209 (370)
T ss_pred ----HHHhCCCCc-------EEEEECchHHh
Confidence 5543 477 99999999543
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.9e-05 Score=86.41 Aligned_cols=156 Identities=9% Similarity=-0.031 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhccC-ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 207 LLGDMLSDAINCLG-FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 207 ilgd~L~~alN~n~-~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
.+.+.+...++... ..|...+...++...+.+|+.+ .|.+-. ....++|+|||+++..++.+. +
T Consensus 52 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~-~~~~~~--------~~~i~~t~G~~~al~~~~~~l----~-- 116 (401)
T TIGR01264 52 EVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHN-PDGPIE--------ADDVVLCSGCSHAIEMCIAAL----A-- 116 (401)
T ss_pred HHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCC--------HHHEEECcChHHHHHHHHHHh----C--
Confidence 34444444444321 1233333445555555555554 232211 125789999999987665532 1
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.+| + .|++++-++.....++..-+..++.++++ +++.+|+++|++.+... +.+++.+..
T Consensus 117 ----~~g--------d-~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p 177 (401)
T TIGR01264 117 ----NAG--------Q-NILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEK------TAALIVNNP 177 (401)
T ss_pred ----CCC--------C-EEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccC------ceEEEEcCC
Confidence 122 2 24555555544555554333477777764 35789999999887643 345666677
Q ss_pred CCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+-+|.+-+ +++|.+ +|+++|+ |+.+|.+|+.+
T Consensus 178 ~NPtG~~~~~~~~~~l~~--------------------~a~~~~~-------~ii~De~y~~~ 213 (401)
T TIGR01264 178 SNPCGSVFSRQHLEEILA--------------------VAERQCL-------PIIADEIYGDM 213 (401)
T ss_pred CCCCCCCCCHHHHHHHHH--------------------HHHHCCC-------EEEEEhhhhhh
Confidence 888998854 777777 9999999 99999999865
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.8e-05 Score=84.03 Aligned_cols=156 Identities=7% Similarity=-0.019 Sum_probs=103.8
Q ss_pred HHHHHHHHHhccC-ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCC-cEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 208 LGDMLSDAINCLG-FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPG-GGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 208 lgd~L~~alN~n~-~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~-~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
+.+.+...++... ..|...+...++...+.+|+.+..|.+-. .. ..++|+||+++...++.+ ..
T Consensus 50 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~--------~~~~i~it~G~~~~l~~~~~~----~~-- 115 (389)
T PRK08068 50 IVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLD--------PETEVAILFGGKAGLVELPQC----LM-- 115 (389)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC--------CCccEEEcCCcHHHHHHHHHH----hC--
Confidence 3455555554321 22333344677888888888777786432 12 468899999987665432 11
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.+| -.|++.+-++.....++.+-+.+++.+|+++ ...+|.+++++++... +.+|+.+-.
T Consensus 116 ----~~g---------d~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P 176 (389)
T PRK08068 116 ----NPG---------DTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEK------AKLMYLNYP 176 (389)
T ss_pred ----CCC---------CEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhcccc------ceEEEEECC
Confidence 122 2366677777777766654345888899874 3578999999888542 456666666
Q ss_pred CCcccccccH---HHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDSY---CCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDpL---~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+-||.+-+. ++|.+ +|++|++ |+.+|-+|+..
T Consensus 177 ~NPTG~~~s~~~~~~l~~--------------------la~~~~~-------~ii~Deay~~~ 212 (389)
T PRK08068 177 NNPTGAVATKAFFEETVA--------------------FAKKHNI-------GVVHDFAYGAI 212 (389)
T ss_pred CCCCCCcCCHHHHHHHHH--------------------HHHHcCe-------EEEEehhhhhh
Confidence 7889988775 56666 8999999 99999999754
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00011 Score=87.67 Aligned_cols=149 Identities=11% Similarity=-0.036 Sum_probs=103.5
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.|..+....++-..+.+|+.+..|++-. ....++|+|++++...++.+-. . .+|
T Consensus 163 ~Y~~s~G~~~lReaIA~~~~~r~g~~~~--------pe~I~iT~Ga~~ai~~~~~~l~----~-----~~g--------- 216 (534)
T PLN02231 163 AYSHSQGIKGLRDAIAAGIEARDGFPAD--------PNDIFLTDGASPAVHMMMQLLI----R-----SEK--------- 216 (534)
T ss_pred CcCCCCCcHHHHHHHHHHHHhccCCCCC--------cccEEEeCCHHHHHHHHHHHhc----c-----CCC---------
Confidence 3555555667777777888777676533 1468999999999877665421 0 112
Q ss_pred eEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHh
Q psy11047 302 LVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCL 376 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eI 376 (943)
-.|++..-++.....++.+-+..++.++.++ .+.+|+++|+++++....++..+.+++.+-..+-||.+-+ +++|
T Consensus 217 d~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~I 296 (534)
T PLN02231 217 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDI 296 (534)
T ss_pred CEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHH
Confidence 1355555555555555544334788888874 3689999999999876555545666666677788998855 5666
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+ +|++||+ |+..|-+|+-.
T Consensus 297 v~--------------------~a~~~~l-------~lI~DEvY~~l 316 (534)
T PLN02231 297 VE--------------------FCKQEGL-------VLLADEVYQEN 316 (534)
T ss_pred HH--------------------HHHHcCC-------EEEEEccchhc
Confidence 77 9999999 99999999865
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-05 Score=93.55 Aligned_cols=126 Identities=10% Similarity=0.121 Sum_probs=93.8
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|+.+ |++.|.. ..+.|++|+.|+..++.+. + .+| -.|
T Consensus 59 ~nPtv~~lE~~l----a~leg~~------------~av~~~SG~aAi~~al~al----l------~~G---------D~V 103 (432)
T PRK06702 59 GNPTLAAFEQKL----AELEGGV------------GAVATASGQAAIMLAVLNI----C------SSG---------DHL 103 (432)
T ss_pred CCcHHHHHHHHH----HHHhCCC------------cEEEECCHHHHHHHHHHHh----c------CCC---------CEE
Confidence 468889999855 6777653 4689999999999888753 1 123 247
Q ss_pred EecCCCchHHHHH----H-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 305 YCSDQAHSSVEKA----G-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 305 ~~S~~aHySv~KA----a-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
+++...+.+.... . .+|. .+..+. ..+|+++++++|+++ +.+|+....++.++.+-|+++|++
T Consensus 104 I~~~~~Y~~T~~~~~~~l~~~Gi-~v~~vd----~~~d~~~l~~~I~~~------Tk~I~~e~pgnP~~~v~Di~~I~~- 171 (432)
T PRK06702 104 LCSSTVYGGTFNLFGVSLRKLGI-DVTFFN----PNLTADEIVALANDK------TKLVYAESLGNPAMNVLNFKEFSD- 171 (432)
T ss_pred EECCCchHHHHHHHHHHHHHCCC-EEEEEC----CCCCHHHHHHhCCcC------CeEEEEEcCCCccccccCHHHHHH-
Confidence 7788877655554 2 2453 566663 347899999999875 456666677788888888999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++-+|.+|+..
T Consensus 172 -------------------iA~~~gi-------~livD~T~~tP 189 (432)
T PRK06702 172 -------------------AAKELEV-------PFIVDNTLATP 189 (432)
T ss_pred -------------------HHHHcCC-------EEEEECCCCch
Confidence 9999999 99999999643
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00014 Score=83.29 Aligned_cols=158 Identities=9% Similarity=0.003 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhccC-ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINCLG-FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284 (943)
Q Consensus 206 silgd~L~~alN~n~-~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~ 284 (943)
..+-+.+..+++... ..|.......++-..+.+|+.+..|++-. ....++|+|++++...++.+- .
T Consensus 52 ~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~--------~~~I~it~G~~~al~~~~~~l----~- 118 (409)
T PLN00143 52 NIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLS--------PDDVYLTLGCKHAAEIIIKVL----A- 118 (409)
T ss_pred HHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC--------HhhEEEecChHHHHHHHHHHH----c-
Confidence 344454555554332 23444444556666777787777666432 136889999999987765532 1
Q ss_pred hhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEec
Q psy11047 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGL 362 (943)
Q Consensus 285 ~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTa 362 (943)
.+| + .|++.+-+.......+.+.+..++.++.+ +++.+|+++|+++++.. +..++.+.
T Consensus 119 -----~~g--------d-~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~~~~~n 178 (409)
T PLN00143 119 -----RPE--------A-NILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADEN------TIAMVIIN 178 (409)
T ss_pred -----CCC--------C-EEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccC------CEEEEEEC
Confidence 122 2 34555555555555555444577888864 35679999999887543 45566666
Q ss_pred CCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 363 ALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 363 GTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
..+-||.+-+ +.+|.+ +|++|++ |+.+|.+|..+
T Consensus 179 P~NPTG~~~s~~~~~~l~~--------------------~a~~~~~-------~ii~De~Y~~l 215 (409)
T PLN00143 179 PGNPCGSVYSYEHLNKIAE--------------------TARKLGI-------LVIADEVYGHI 215 (409)
T ss_pred CCCCCCCccCHHHHHHHHH--------------------HHHHcCC-------eEEEEcccccc
Confidence 7889999877 556666 8999999 99999999865
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00012 Score=82.19 Aligned_cols=138 Identities=12% Similarity=-0.083 Sum_probs=96.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
+....+...+.+|+.+..|++-. ....++|+|++++...++.+.- .+| + .|++
T Consensus 65 ~g~~~lr~aia~~~~~~~~~~~~--------~~~I~it~G~~~~l~~~~~~~~----------~~g--------d-~v~v 117 (368)
T PRK03317 65 RDAVALRADLAAYLTAQTGVGLT--------VENVWAANGSNEILQQLLQAFG----------GPG--------R-TALG 117 (368)
T ss_pred CchHHHHHHHHHHhhhhccCCCC--------hhhEEECCCHHHHHHHHHHHhc----------CCC--------C-EEEE
Confidence 34566777788888887776432 1367899999999866655421 122 2 2444
Q ss_pred cCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccc
Q psy11047 307 SDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLG 386 (943)
Q Consensus 307 S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~ 386 (943)
..-+......++...+.+++.++.++++.+|++++++++.... +.+++.+--.+-+|.+-+.+++.+
T Consensus 118 ~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~-----~~~i~l~~p~NPtG~~~~~~~l~~-------- 184 (368)
T PRK03317 118 FVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHR-----PDVVFLTSPNNPTGTALPLDDVEA-------- 184 (368)
T ss_pred eCCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhccC-----CCEEEEeCCCCCCCCCCCHHHHHH--------
Confidence 4545555555555444467777777778999999999987431 334555556677999999999999
Q ss_pred cccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 387 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 387 ~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++.+++ |+.+|-+|+.+
T Consensus 185 ------------l~~~~~~-------~lI~DE~y~~~ 202 (368)
T PRK03317 185 ------------ILDAAPG-------IVVVDEAYAEF 202 (368)
T ss_pred ------------HHHHCCc-------eEEEeCCchhh
Confidence 8988888 99999999865
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.5e-05 Score=83.79 Aligned_cols=129 Identities=8% Similarity=-0.089 Sum_probs=84.6
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++.+|+.+|.+.+ ..++|+|++++...++.+. . .+| +..|++++-.+...
T Consensus 63 ~lr~~ia~~~~~~~~----------~I~~t~G~~~~l~~~~~~~----~------~~g--------~~~vlv~~p~y~~~ 114 (364)
T PRK04781 63 GLRSALAALYGCAPE----------QLLIGRGSDEAIDLLVRAL----C------VPG--------RDAVLVTPPVFGMY 114 (364)
T ss_pred HHHHHHHHHhCcChH----------HEEEeCCHHHHHHHHHHHh----c------CCC--------CCeEEEcCCChHHH
Confidence 456667778887654 6889999999976555431 1 111 12355555553334
Q ss_pred HHHHHHCCccEEEEecCC--C-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDD--K-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~--~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
..++...+.+++.+|.++ + ..+|++++.+.+... .+.+|+.+..++.+|.+-|.+++.+
T Consensus 115 ~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~-----~~~lv~l~~p~NPTG~~~~~~~~~~------------- 176 (364)
T PRK04781 115 AVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALAS-----NAKLVFLCSPSNPAGSAIALDQIER------------- 176 (364)
T ss_pred HHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhcc-----CCeEEEEcCCCCCCCCCcCHHHHHH-------------
Confidence 444454445888888742 2 467888886554322 1556666778899999999888877
Q ss_pred ccCchHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 392 LQTNFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 392 L~RrfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++. ++. |+.+|.+|+.+
T Consensus 177 -------l~~~~~~~~-------~iI~Deay~~f 196 (364)
T PRK04781 177 -------ALQALQGKA-------LVVVDEAYGEF 196 (364)
T ss_pred -------HHHhCCCCc-------EEEEeCcchhh
Confidence 5553 367 99999999865
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00012 Score=83.55 Aligned_cols=166 Identities=14% Similarity=0.113 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCC-cEEEcCChHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPG-GGVLQTTASESTLICLLAGRTEA 282 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~-~GvfTsGGTeANL~AL~aAR~~~ 282 (943)
++.++..+.....+.....|........+-..+.+|+.+..|++-. .. ..++|+|++++...++.+-
T Consensus 48 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~--------~~~~I~it~G~~~al~~~~~~l---- 115 (403)
T PRK08636 48 PQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLD--------PETEVVATMGSKEGYVHLVQAI---- 115 (403)
T ss_pred CHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCC--------CCCeEEECCChHHHHHHHHHHh----
Confidence 3344544443332222233433334567777888899888887532 12 4789999999986665431
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhcc-CCCcEEEE
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKK-HLIPFFIF 359 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~k-G~~P~~VV 359 (943)
. .+| -.|++.+-++.....++.+-+.+++.|+.+ +++.+|++++.+.+++..++ ...+.+++
T Consensus 116 ~------~~g---------d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~ 180 (403)
T PRK08636 116 T------NPG---------DVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVV 180 (403)
T ss_pred C------CCC---------CEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEE
Confidence 1 122 246666666666666665433488888874 45789998776555543322 12367778
Q ss_pred EecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 360 SGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 360 aTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+...+-+|.+-+ +++|.+ +|++|++ |+.+|-+|+..
T Consensus 181 ~~~P~NPTG~~~s~~~~~~l~~--------------------~a~~~~~-------~II~De~Y~~l 220 (403)
T PRK08636 181 VNFPHNPTTATVEKSFYERLVA--------------------LAKKERF-------YIISDIAYADI 220 (403)
T ss_pred EeCCCCCCCccCCHHHHHHHHH--------------------HHHHcCc-------EEEEeccchhh
Confidence 7777888998866 456666 8999999 99999999865
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-05 Score=90.63 Aligned_cols=129 Identities=12% Similarity=-0.002 Sum_probs=82.1
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.....|...++|.. +|+++|.+. .+++++|++|+..++.+. + .+| +
T Consensus 40 ~r~~~p~~~~L~~~----lA~l~g~~~------------~v~~~sG~~ai~~~l~al----~------~~G--------d 85 (376)
T PRK06460 40 SREANPTVLELTKK----IVELENAEM------------GVAFSSGMGAISTTALAL----L------KPG--------N 85 (376)
T ss_pred eCCCCccHHHHHHH----HHHHhCCCc------------EEEeCCHHHHHHHHHHHH----h------CCC--------C
Confidence 34456777777764 578888743 456677788876665432 1 122 2
Q ss_pred eEEEecCCC---chH-HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 302 LVAYCSDQA---HSS-VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 302 ~vV~~S~~a---HyS-v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
.|+++... -|. +.+.+...+.++..++.++ .+.+++.++. .+.+|+.+..++.+|.+-|+++|.
T Consensus 86 -~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~-----~~~l~~~~~~------~tklV~l~sp~NPtG~v~d~~~I~ 153 (376)
T PRK06460 86 -SVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGS-----DNIIEKAKSK------RYDVVFVENITNPLLRVVDITELS 153 (376)
T ss_pred -EEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCC-----HHHHHHhcCC------CceEEEEECCCCCCCcccCHHHHH
Confidence 24444332 233 2344433233677777643 2333333322 266788888888999999999999
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|+++|+ ++.+|.+|+..
T Consensus 154 ~--------------------la~~~g~-------~vivDea~~~~ 172 (376)
T PRK06460 154 K--------------------VCKENGS-------ILIVDATFSTP 172 (376)
T ss_pred H--------------------HHHHcCC-------EEEEECCcCcc
Confidence 9 9999999 99999998643
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00011 Score=82.87 Aligned_cols=136 Identities=12% Similarity=0.063 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
..++-..+.+|+.+..|++... ....++|+|++++...++.+. + .+| ..|++.+
T Consensus 71 ~~~lr~aia~~~~~~~g~~~~~-------~~~ii~t~G~~~~i~~~~~~~----~------~~g---------d~Vl~~~ 124 (385)
T PRK09276 71 MLEFRKAVADWYKRRFGVELDP-------ETEVISLIGSKEGIAHIPLAF----V------NPG---------DVVLVPD 124 (385)
T ss_pred cHHHHHHHHHHHHHHhCCCCCC-------CCcEEEccCcHHHHHHHHHHh----C------CCC---------CEEEEcC
Confidence 4566677778888777764220 013678899999986654431 1 122 2355666
Q ss_pred CCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVK 383 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~ 383 (943)
-++.....++..-+.+++.++.+. .+.+|++++++.+... +.+|+.+...+-||.+-+ +++|.+
T Consensus 125 P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~~----- 193 (385)
T PRK09276 125 PGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKK------AKLMFINYPNNPTGAVADLEFFEEVVD----- 193 (385)
T ss_pred CCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeCCCCCCCCCCCHHHHHHHHH-----
Confidence 666656666654344788888864 3568999998877532 556676667888998866 567777
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+.+
T Consensus 194 ---------------~~~~~~~-------~ii~De~y~~~ 211 (385)
T PRK09276 194 ---------------FAKKYDI-------IVCHDAAYSEI 211 (385)
T ss_pred ---------------HHHHCCc-------EEEEecchhhe
Confidence 8999999 99999999865
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.4e-05 Score=84.22 Aligned_cols=127 Identities=10% Similarity=-0.017 Sum_probs=91.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++++++.+|++.+ ..++|+|++++....+.+. . .+| ..|++..-++...
T Consensus 75 ~lr~~ia~~~~~~~~----------~i~~t~G~~~~l~~~~~~~----~------~~g---------d~vli~~P~y~~~ 125 (371)
T PRK05166 75 ALREAIAARTGVPAD----------RIILGNGSEDLIAVICRAV----L------RPG---------DRVVTLYPSFPLH 125 (371)
T ss_pred HHHHHHHHHhCcCHH----------HEEEcCCHHHHHHHHHHHh----c------CCC---------CEEEEcCCChHHH
Confidence 466778888888653 6899999999875544321 1 122 2355666666666
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
...+..-+.+++.++.++++.+|.+++++.++.. +.+|+.+...+.+|.+-|.+++.+
T Consensus 126 ~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~---------------- 183 (371)
T PRK05166 126 EDYPTMMGARVERVTVTPDLGFDLDALCAAVARA------PRMLMFSNPSNPVGSWLTADQLAR---------------- 183 (371)
T ss_pred HHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcC------CCEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 6666443458889999888999999999988653 456667888899999988877776
Q ss_pred chHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++. .+. ++.+|.+|+-+
T Consensus 184 ----l~~~~~~~~-------~ii~De~y~~~ 203 (371)
T PRK05166 184 ----VLDATPPET-------LIVVDEAYAEY 203 (371)
T ss_pred ----HHHhCCCCc-------EEEEECcHHHh
Confidence 5543 367 89999999755
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-05 Score=85.22 Aligned_cols=127 Identities=11% Similarity=-0.038 Sum_probs=87.1
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+.+.+|+++|.+.+ ..++|+|+++++..++.+- . .+| + .|++..-+....
T Consensus 61 ~lr~~ia~~~~~~~~----------~I~~~~G~~~~l~~~~~~~----~------~~g--------d-~Vli~~p~y~~~ 111 (352)
T PRK03321 61 ELRAALAEHLGVPPE----------HVAVGCGSVALCQQLVQAT----A------GPG--------D-EVIFAWRSFEAY 111 (352)
T ss_pred HHHHHHHHHhCcCHH----------HEEECCCHHHHHHHHHHHh----c------CCC--------C-EEEeCCCCHHHH
Confidence 455667777886543 5788999988765554321 1 122 2 244443332223
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++...+.+++.++.++++.+|++++++.++.. +.+|+.+...+.+|.+-|.+++.+
T Consensus 112 ~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~l~~---------------- 169 (352)
T PRK03321 112 PILVQVAGATPVQVPLTPDHTHDLDAMAAAITDR------TRLIFVCNPNNPTGTVVTPAELAR---------------- 169 (352)
T ss_pred HHHHHHcCCEEEEccCCCCCCCCHHHHHHhhccC------CCEEEEeCCCCCcCCCcCHHHHHH----------------
Confidence 3334444458888998867899999999988643 456666777888999999999998
Q ss_pred chHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+. +|+ |+.+|.+|+.+
T Consensus 170 ----l~~~~~~~~-------~ii~De~y~~~ 189 (352)
T PRK03321 170 ----FLDAVPADV-------LVVLDEAYVEY 189 (352)
T ss_pred ----HHHhCCCCe-------EEEEechHHHh
Confidence 8876 578 99999999865
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00028 Score=80.29 Aligned_cols=163 Identities=10% Similarity=0.021 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
++.+...+.....+.....|.......++...+.+|+.+..|++-.. ....++|+|++++....+.+. .
T Consensus 44 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-------~~~i~~t~G~~~~l~~~~~~~----~ 112 (395)
T PRK08175 44 PPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDP-------ESEAIVTIGSKEGLAHLMLAT----L 112 (395)
T ss_pred CHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCcEEEccCcHHHHHHHHHHh----C
Confidence 34444444333333222334333345678888889998887775320 014789999999875443321 1
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.|| -.|++++-++.....++..-+.++..++.++++ .+.++|+++++.... .+.+++.+..
T Consensus 113 ------~~g---------d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~~l~~~l~~~~~---~~~~v~i~~p 173 (395)
T PRK08175 113 ------DHG---------DTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGV-DFFNELERAIRESYP---KPKMMILGFP 173 (395)
T ss_pred ------CCC---------CEEEEcCCCCcchHHHHHHcCCeEEEEecccCC-CcHHHHHHHHhhccC---CceEEEEeCC
Confidence 122 236666767766666554333478888887543 358888888865311 2556666666
Q ss_pred CCcccccccH---HHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDSY---CCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDpL---~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+-+|.+-+. ++|.+ +|++||+ |+.+|.+|+..
T Consensus 174 ~NPtG~~~~~~~~~~i~~--------------------~a~~~~i-------~ii~De~y~~l 209 (395)
T PRK08175 174 SNPTAQCVELEFFEKVVA--------------------LAKRYDV-------LVVHDLAYADI 209 (395)
T ss_pred CCCCCCCCCHHHHHHHHH--------------------HHHHcCc-------EEEEecchHhh
Confidence 7888988775 67777 9999999 99999999754
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.9e-05 Score=88.06 Aligned_cols=138 Identities=10% Similarity=0.015 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHhC----CCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 230 TELEIITMNWLGKMIG----LPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG----~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
.++-..+.+|+.+..| +++ ...++|+|+++++...+.+- . .|| -.|+
T Consensus 97 ~~LR~aiA~~l~~~~g~~v~v~p----------e~Ivit~Ga~~al~~l~~~l----~------~pG---------D~Vl 147 (496)
T PLN02376 97 KKFRQAIAHFMGKARGGKVTFDP----------ERVVMSGGATGANETIMFCL----A------DPG---------DVFL 147 (496)
T ss_pred HHHHHHHHHHHHHHhCCCCcCCh----------hhEEEccchHHHHHHHHHHh----C------CCC---------CEEE
Confidence 4555667777777766 333 36899999999987665541 1 133 2356
Q ss_pred ecCCCchHHHHHHH-HCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhh
Q psy11047 306 CSDQAHSSVEKAGL-IGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTA 379 (943)
Q Consensus 306 ~S~~aHySv~KAa~-LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~ 379 (943)
+..-.+......+. ..+.+++.|+++ +++.+|+++++++++...+.+..+.+|+.+-..+-+|.+-+ +++|.+
T Consensus 148 v~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~- 226 (496)
T PLN02376 148 IPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVR- 226 (496)
T ss_pred ECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHH-
Confidence 66666666666553 334588899985 46789999999887654333444677777788899999877 455566
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++|++ ++-+|-+|+..
T Consensus 227 -------------------~a~~~~i-------~lI~DEiY~~~ 244 (496)
T PLN02376 227 -------------------FVTRKNI-------HLVVDEIYAAT 244 (496)
T ss_pred -------------------HHHHcCC-------EEEEEcCcccc
Confidence 8999999 99999999875
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00012 Score=84.39 Aligned_cols=111 Identities=14% Similarity=-0.052 Sum_probs=80.5
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHH
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGD 339 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~d 339 (943)
..++|+|++++...++.+.. .|| + .|++.+-++.....++..-+.+++.||++++| +|++
T Consensus 143 ~Iiit~G~~~al~~~~~~l~----------~pg--------d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g-~~~~ 202 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHL----------LPG--------D-SVAVEDPCFLSSINMLRYAGFSASPVSVDAEG-MQPE 202 (431)
T ss_pred eEEEecCcHHHHHHHHHHhC----------CCC--------C-EEEEeCCCcHHHHHHHHHcCCeEEeeccCCCC-CCHH
Confidence 58899999999876665421 122 2 35555666666777775434588899997665 9999
Q ss_pred HHHHHHHHhhccCCCcEEEEEe-cCCCcccccccHH---HhhhhccccccccccccccCchHHHHHHc-CCCCCccchhh
Q psy11047 340 KLIEAIERDKKKHLIPFFIFSG-LALPAFLVVDSYC---CLGTAMIVKGLGFYKMKLQTNFPNFILSY-FPKFQSVRLAQ 414 (943)
Q Consensus 340 aLe~aI~~d~~kG~~P~~VVaT-aGTT~tGaIDpL~---eIa~~~~~~d~~~~~i~L~RrfR~iar~~-Gl~~~~l~lwL 414 (943)
+|+++++.. +.+++.+ -..+-||.+-+.+ +|.+ +|++| ++ |+
T Consensus 203 ~l~~~~~~~------~k~i~~~p~p~NPTG~~~s~~~~~~l~~--------------------la~~~~~~-------~i 249 (431)
T PRK15481 203 KLERALAQG------ARAVILTPRAHNPTGCSLSARRAAALRN--------------------LLARYPQV-------LV 249 (431)
T ss_pred HHHHHHhcC------CCEEEECCCCCCCCCccCCHHHHHHHHH--------------------HHHhcCCc-------eE
Confidence 999988642 4444444 7788889987765 7777 89999 99 99
Q ss_pred hHHhhhcCC
Q psy11047 415 KFEALVLGD 423 (943)
Q Consensus 415 HVDAA~GG~ 423 (943)
-.|-+|+-+
T Consensus 250 i~De~Y~~~ 258 (431)
T PRK15481 250 IIDDHFALL 258 (431)
T ss_pred EecCchhhh
Confidence 999999755
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00013 Score=84.71 Aligned_cols=358 Identities=13% Similarity=0.069 Sum_probs=168.4
Q ss_pred hhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHH-HHH--HHHhccC-ccccCChh
Q psy11047 153 PGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGD-MLS--DAINCLG-FTWASSPA 228 (943)
Q Consensus 153 p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd-~L~--~alN~n~-~~~~~SPa 228 (943)
|.+++..-+..+|+ +.+-.++++.+.++-..... ...|.|-=...--+|+++.. ++. .++.... ...+.|-.
T Consensus 32 P~~i~~~~~~~lp~-~~sE~e~~r~~~~la~kN~~---~~~fiG~G~y~~~~P~~i~~~i~~~~ef~TaYtPYQpEisQG 107 (429)
T PF02347_consen 32 PEEIRLKKPLNLPE-PLSEYELLRHLERLASKNKS---YTSFIGAGSYTHYVPAVIDRNILSRPEFYTAYTPYQPEISQG 107 (429)
T ss_dssp -GGG-SS-----------HHHHHHHHHHHHTTS-----TTS---CTTT-----HHHHH-HHCCHHCCCS-STTSGGGBHH
T ss_pred CHhhcCCCCCCCCC-CCCHHHHHHHHHHHHhcCCC---CCccccccccCceeChhhcCccccChhhhccCCCCCcHHHHH
Confidence 55554332345653 37788999999886543322 23333321111125666655 222 1121110 11123333
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
.-++-.+.-.++++|.|+|-. ..-+..|||.+- .|+..|.... + . .+-.+++|+
T Consensus 108 ~Lq~lfe~Qs~i~eLTGmdva----------NaSlyd~atA~a-Ea~~ma~r~~-~-------~-------~~~~vlv~~ 161 (429)
T PF02347_consen 108 RLQALFEYQSMICELTGMDVA----------NASLYDGATAAA-EAMLMAVRAT-K-------R-------KRNKVLVPE 161 (429)
T ss_dssp HHHHHHHHHHHHHHHHTSSEE-----------SEBSSCCHHHH-HHHHHHHHHH-T-------T----------EEEEET
T ss_pred HHHHHHHHHHHHHHhhCCCcc----------CCCCCChhHHHH-HHHHHHHHhc-c-------c-------CCcEEEEcC
Confidence 444444566789999999853 112445555443 3444332211 0 0 122588899
Q ss_pred CCchHHHHHHH----HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 309 QAHSSVEKAGL----IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 309 ~aHySv~KAa~----LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
..|........ ..+.+++.+++++.+..| .+ .+..|+.+..+ ..|.+.++++|++
T Consensus 162 ~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~~------~~a~v~vq~Pn-~~G~~ed~~~i~~------ 220 (429)
T PF02347_consen 162 SLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------DD------DTAAVMVQNPN-TFGVFEDIKEIAD------ 220 (429)
T ss_dssp TS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------ST------TEEEEEEESS--TTSB--THHHHHH------
T ss_pred CcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------cc------CeEEEEeecCC-CCceEeeHHHHHH------
Confidence 99988766542 234588999998888888 22 26677776665 4588888999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccccc
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV 464 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p 464 (943)
+++++|. .+.+ +|---+ + +. +.+
T Consensus 221 --------------~~h~~ga-------l~~~-~ad~~a--L--------~~-------------------------l~~ 243 (429)
T PF02347_consen 221 --------------IAHAAGA-------LVIV-GADPNA--L--------GG-------------------------LKS 243 (429)
T ss_dssp --------------HHHHTT--------EEEE-CGGCCG--C--------CT-------------------------C--
T ss_pred --------------HHHHcCC-------EEEE-ecCHHH--H--------hC-------------------------cCC
Confidence 9999987 4443 331111 1 10 122
Q ss_pred chhhhhcCCCCeeEEEEcCCCccC--------------ccCcchhhhhcccCccccccC-C-CCcccccCccccC----C
Q psy11047 465 PASLRIQGLGRAQNFTIVPSSLLR--------------VKNSGALHRTFNVEPLYLRHE-N-SGLAIDYMHWQIP----L 524 (943)
Q Consensus 465 ~~r~~l~Gie~ADSItiDpHK~L~--------------vr~~~~L~~af~~~p~YL~~~-~-~g~~~d~~~~tie----~ 524 (943)
+- --.||-+ +.-||-++ +|+. +.+.+. ...++.. + .|. ..+ ..+++ -
T Consensus 244 Pg------e~GADI~-vg~~Q~fg~p~~~GGP~~G~~a~~~~--l~r~lP--GRiVG~t~D~~G~-~~~-~ltLqtREQH 310 (429)
T PF02347_consen 244 PG------EYGADIV-VGEHQTFGIPMGFGGPGAGFFAVRED--LVRQLP--GRIVGQTKDADGK-RAF-VLTLQTREQH 310 (429)
T ss_dssp GG------GGT-SEE-EECCTTTT---CCC-S--EEEEE-GG--GGGGS---S-EEEEEEBCCCS-CCE-EEE-GGGTCH
T ss_pred hh------hcCccEE-eeCCCCCcccCCCCCCCeeeEEEhhh--hhhhCC--Cceeccccccccc-cee-eecccccccc
Confidence 21 1267887 66688777 2222 222111 1111100 0 110 000 00111 0
Q ss_pred CCC------------cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcc
Q psy11047 525 SKR------------FRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPN 592 (943)
Q Consensus 525 SRr------------frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~ 592 (943)
-|| .-|+..|+.+..+|.+|+++..+.
T Consensus 311 IrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~----------------------------------------- 349 (429)
T PF02347_consen 311 IRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAER----------------------------------------- 349 (429)
T ss_dssp HHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHH-----------------------------------------
Confidence 012 123467778999999999998888
Q ss_pred cccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEee
Q psy11047 593 FILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQN 672 (943)
Q Consensus 593 ~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~ 672 (943)
.++.|.++++.|.+..++.+..+.-..-|....++ ....+|+++....| +... ..+...+=+.+
T Consensus 350 ----------~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~~~~~--~~~~~l~~~~~~~g-l~~~---~~~~~~~li~~ 413 (429)
T PF02347_consen 350 ----------IHLNAHYLAERLKKIYGLPFDNPFFFEFVVVFSKD--KEVEELLKRGIEGG-LNLR---YPDDGALLICV 413 (429)
T ss_dssp ----------HHHHHHHHHHHHCCTTBECSSSSSBSSEEEEESS---HHHHHHHHTT-----EEEG---GG-SSEEEEE-
T ss_pred ----------HHHHHHHHHHHHHHhcCcccCCCCceeeeeecCCc--HHHHHHHHHHHhcC-CCcc---ccCCCeEEEEc
Confidence 35678899999988744444344434444444332 22234666666666 3322 22333555666
Q ss_pred cCCCCHHHHHHHHHHH
Q psy11047 673 FTRTTNDDITRDWNEI 688 (943)
Q Consensus 673 ~~~tt~edId~ll~~I 688 (943)
--.+|++|||++++.+
T Consensus 414 TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 414 TETRTKEDIDRLVEAF 429 (429)
T ss_dssp -TT--HHHHHHHHH--
T ss_pred cCCCCHHHHHHHHhcC
Confidence 6778999999998764
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00018 Score=82.66 Aligned_cols=138 Identities=7% Similarity=-0.121 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
++.|.++.++|++..+++ ..+|+++|||||..|+..||.+..+ ..++ .+-+|.....
T Consensus 77 ~~~~~~la~~l~~~~~~~------------~v~f~~SGseA~e~Aik~ar~~~~~----~~~~-------r~~ii~~~~~ 133 (395)
T PRK03715 77 NEPMAKLAGLLTQHSCFD------------KVFFANSGAEANEGAIKLARKWGRK----HKNG-------AYEIITFDHS 133 (395)
T ss_pred CHHHHHHHHHHhhccCCC------------EEEEeCCcHHHHHHHHHHHHHHhhc----cCCC-------CcEEEEECCC
Confidence 566677777777654332 4789999999999999999864211 0111 2234556667
Q ss_pred CchHHHHHHHHCCcc-EE--EEecCCC----CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhhh
Q psy11047 310 AHSSVEKAGLIGLVN-MR--YIESDDK----LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLGT 378 (943)
Q Consensus 310 aHySv~KAa~LG~~~-v~--~Vp~D~~----grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~ 378 (943)
-|-+..-++.++... .+ ..|.... ..-|.++|++.+... +.+|+..-.....|.+-| +++|.+
T Consensus 134 yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~aavi~Epv~~~gG~~~~~~~~l~~l~~ 207 (395)
T PRK03715 134 FHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDK------TVAVMLEPVQGEGGVIPATREFMQQLRA 207 (395)
T ss_pred cCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCC------ceEEEEeCCcCCCCCccCCHHHHHHHHH
Confidence 787776666443211 11 1111000 123678888877532 445555544445566655 888888
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|-++.|+
T Consensus 208 --------------------l~~~~~~-------llI~DEv~tG~ 225 (395)
T PRK03715 208 --------------------LTKQHGL-------LLIVDEVQTGC 225 (395)
T ss_pred --------------------HHHHcCC-------EEEEeccccCC
Confidence 9999999 99999999875
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00012 Score=82.29 Aligned_cols=124 Identities=10% Similarity=-0.018 Sum_probs=82.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++.+|+.++.+.+ ..++|+|++++...++.+ +. ++ .|++.+-+....
T Consensus 58 ~lr~~ia~~~~~~~~----------~i~it~Ga~~~l~~~~~~-----~~---------------~~-~v~i~~P~y~~~ 106 (354)
T PRK06358 58 ELRKRIASFEQLDLE----------NVILGNGATELIFNIVKV-----TK---------------PK-KVLILAPTFAEY 106 (354)
T ss_pred HHHHHHHHHhCCChh----------hEEECCCHHHHHHHHHHH-----hC---------------CC-cEEEecCChHHH
Confidence 455666777777654 689999999998665442 11 11 134444444445
Q ss_pred HHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~ 389 (943)
..++...+.+++.++.+.+ +.+| +++.+.+... +.+++.+...+-+|.+-+ +.+|.+
T Consensus 107 ~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~l~~----------- 168 (354)
T PRK06358 107 ERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEE------IDLVFLCNPNNPTGQLISKEEMKKILD----------- 168 (354)
T ss_pred HHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccC------CCEEEEeCCCCCCCCccCHHHHHHHHH-----------
Confidence 5555443447888888643 4788 5555555321 456666777889998866 666666
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|.-+
T Consensus 169 ---------~a~~~~~-------~ii~De~Y~~~ 186 (354)
T PRK06358 169 ---------KCEKRNI-------YLIIDEAFMDF 186 (354)
T ss_pred ---------HHHhcCC-------EEEEeCccccc
Confidence 8999999 99999999755
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00012 Score=84.41 Aligned_cols=84 Identities=14% Similarity=-0.089 Sum_probs=54.1
Q ss_pred HHHHHHHHHhCCCCeEEec--CCCccEEEEEecCCC--hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHH
Q psy11047 606 LAQKFEALVLGDPRFEIPA--ARHLGMVVIRLLGEN--ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDI 681 (943)
Q Consensus 606 LA~~l~~~L~~~p~~eIl~--~~~l~iV~Fr~~g~n--~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edI 681 (943)
+.+++.+.|++...+..+. .....++.|.+.+.+ .....+.+.|.++|.+ +.+. + ..+|++.+..+|++||
T Consensus 335 ~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~-v~~~---~-~~lR~~p~l~~t~edI 409 (423)
T PRK05964 335 LSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVL-LRPL---G-NTIYLMPPYIITAEEL 409 (423)
T ss_pred HHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeE-EEec---C-CEEEEeCCcccCHHHH
Confidence 4444555444432222222 223445677775432 2456788888888854 4432 2 5899999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy11047 682 TRDWNEIRNTATE 694 (943)
Q Consensus 682 d~ll~~I~~~~~~ 694 (943)
+++++.++++..+
T Consensus 410 d~~v~~l~~al~~ 422 (423)
T PRK05964 410 DRITDAIVEVADE 422 (423)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888755
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.3e-05 Score=85.60 Aligned_cols=300 Identities=14% Similarity=0.069 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
.+-..+.+.||.|+|.-.. =+...++|-.|+.-+++|--+. .+ ++. +++|+..
T Consensus 76 ~lp~~lgdklApLiGA~~~-----------Evvv~dtts~nl~k~L~aalr~-------~~--------~r~-vIv~E~~ 128 (407)
T COG3844 76 DLPERLGDKLAPLIGARAG-----------EVVVTDTTSINLFKVLAAALRP-------QE--------GRR-VIVSEGD 128 (407)
T ss_pred hchhHHHHHhhhhhcCCCC-----------ceEEeCCcchHHHHHHHHHhcc-------CC--------Cce-EEeecCC
Confidence 4555788999999998653 3566777778877777663211 00 233 4556654
Q ss_pred chHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccc
Q psy11047 311 HSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 311 HySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i 390 (943)
-+-...=..-|...+..+.-+-.+.+.+.++++++..+ ...|+.+.-..-||-.-++.+|..
T Consensus 129 ~fpTdly~a~g~~~~~~~~~~~~~~~~P~~~~~~~~dd------~AvV~L~~V~y~TGql~dm~aiT~------------ 190 (407)
T COG3844 129 NFPTDLYIAEGLADLLGIGYDLEGVIAPRALEEAITDD------VAVVLLSHVNYKTGQLLDMRAITA------------ 190 (407)
T ss_pred CCCcchhhhcchhhhhcccccceeeeChHHHHHhhccc------eEEEEeccccccccceeeHHHHHH------------
Confidence 43322211112222333334556777888999999988 678889999999999999999999
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhh
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRI 470 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l 470 (943)
+++++|+ .+--|=|+.++ ++ | .. |
T Consensus 191 --------~AH~~ga-------lv~wDLAHsaG-av--p---------------------------------~~-----L 214 (407)
T COG3844 191 --------LAHQHGA-------LVGWDLAHSAG-AV--P---------------------------------VD-----L 214 (407)
T ss_pred --------HHHhcCc-------eEEeehhcccC-Cc--c---------------------------------ee-----e
Confidence 9999999 78888888777 33 1 11 1
Q ss_pred cCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccCCCCccccc-Ccccc-CCCCCcchH--------
Q psy11047 471 QGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDY-MHWQI-PLSKRFRAL-------- 531 (943)
Q Consensus 471 ~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~-~~~ti-e~SRrfrAL-------- 531 (943)
.+ ..||.-..+.||+|+ +-.+.....+...-.-++++... +.. ..|.. ++.|||.-.
T Consensus 215 h~-~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~p---f~m~~~y~p~~ga~rf~~gt~~V~s~a 290 (407)
T COG3844 215 HA-AGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARP---FAMEEVYAPGPGARRFLCGTQPVLSLA 290 (407)
T ss_pred cc-cCCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCCCc---chhhhccCcCccccceeeCCcchhhhH
Confidence 11 368999999999998 11111111111111123332211 000 01222 455565421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHH
Q psy11047 532 KLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 611 (943)
Q Consensus 532 klW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~ 611 (943)
.+-..|-.++. .++..+|++ ++.|+.+|-
T Consensus 291 al~~aLDifa~---------------------------~~i~~lR~k------------------------SlaLTd~fi 319 (407)
T COG3844 291 ALEGALDIFAD---------------------------VDITELRKK------------------------SLALTDYFI 319 (407)
T ss_pred HHhhhhhhhhh---------------------------cCHHHHHHh------------------------hhHHHHHHH
Confidence 11112222222 223334433 688999999
Q ss_pred HHHhCC-C--CeEEecCC----CccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEE-eecCCCCHHHHHH
Q psy11047 612 ALVLGD-P--RFEIPAAR----HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRA-QNFTRTTNDDITR 683 (943)
Q Consensus 612 ~~L~~~-p--~~eIl~~~----~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~-v~~~~tt~edId~ 683 (943)
+++... + ++++..|. .-+-|+|+.+ ...++.+.|..+|.+- -.+.+.++|| ..-.+++-.||-.
T Consensus 320 eLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp----~~~~V~qaLi~rGVig----D~R~P~vlRfgftPlY~~~~DVw~ 391 (407)
T COG3844 320 ELVEARCEYYGLTLVTPRAHEERGSQVSLYHP----HGYQVMQALIDRGVIG----DFREPDVLRFGFTPLYVSFVDVWD 391 (407)
T ss_pred HHHHhccccCCcEEeccchhhhccceeeEecC----cHHHHHHHHHHcCccc----cccCCCeeeecCccceechhHHHH
Confidence 998764 4 57887654 5888999976 2578888899999642 2466889999 7777899999999
Q ss_pred HHHHHHHHHHH
Q psy11047 684 DWNEIRNTATE 694 (943)
Q Consensus 684 ll~~I~~~~~~ 694 (943)
.++.|+++.+.
T Consensus 392 AV~~L~evL~t 402 (407)
T COG3844 392 AVDALEEVLDT 402 (407)
T ss_pred HHHHHHHHHHh
Confidence 99988877544
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.5e-05 Score=90.14 Aligned_cols=122 Identities=7% Similarity=-0.090 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch-
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS- 312 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy- 312 (943)
..+.+.+++++|.+. .+++++|+.|++.++.+ +. +| -.|++|+..|.
T Consensus 125 ~~le~~lA~l~gae~------------alvv~sg~aAi~l~l~~-----l~------~G---------deVIvs~~e~v~ 172 (454)
T TIGR00474 125 SHVEGLLCELTGAED------------ALVVNNNAAAVLLALNT-----LA------KG---------KEVIVSRGELVE 172 (454)
T ss_pred HHHHHHHHHHhCCCc------------EEEECCHHHHHHHHHHH-----hC------Cc---------CEEEECCChhhh
Confidence 346678899999863 46788899998777632 11 22 23677877663
Q ss_pred -----HHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCc--cc--ccccHHHhhhhcccc
Q psy11047 313 -----SVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPA--FL--VVDSYCCLGTAMIVK 383 (943)
Q Consensus 313 -----Sv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~--tG--aIDpL~eIa~~~~~~ 383 (943)
++...+...+..++.++.+ +..++++++++|+++ +.+|+.+.-++. .| .+-|+++|++
T Consensus 173 ~ggs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~~~------T~lv~~~h~sN~~~~G~~~~~dl~~I~~----- 239 (454)
T TIGR00474 173 IGGSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAITEN------TALLLKVHTSNYRIVGFTEEVSIAELVA----- 239 (454)
T ss_pred hcchhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcCcC------CEEEEEEccCcccccCCCCCCCHHHHHH-----
Confidence 3333333334467777653 456899999998765 455555555544 35 4678999999
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
+|++||+ .+.||++.|.
T Consensus 240 ---------------la~~~g~-------~vivD~~sG~ 256 (454)
T TIGR00474 240 ---------------LGREHGL-------PVMEDLGSGS 256 (454)
T ss_pred ---------------HHHHcCC-------eEEEECCCcc
Confidence 9999999 9999987553
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.4e-05 Score=87.84 Aligned_cols=126 Identities=10% Similarity=0.102 Sum_probs=89.9
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....||+.+ +.+-|-+ ..+++++|++|+..++.+- + .+| -.
T Consensus 61 ~gnPt~~~Le~~l----a~le~~~------------~~v~~sSG~aAi~~~l~al----l------~~G---------D~ 105 (395)
T PRK05967 61 RGTPTTDALCKAI----DALEGSA------------GTILVPSGLAAVTVPFLGF----L------SPG---------DH 105 (395)
T ss_pred CCChHHHHHHHHH----HHHhCCC------------CEEEECcHHHHHHHHHHHh----c------CCC---------CE
Confidence 4567777777644 4554432 4678888999987776542 1 133 24
Q ss_pred EEecCCCchHHHHHH-----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 304 AYCSDQAHSSVEKAG-----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 304 V~~S~~aHySv~KAa-----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
|+++...+.+....+ .+| .++..++.+ +.++++++|+++ +.+|..+..++.++.+.||++|++
T Consensus 106 Vlv~~~~Y~~~~~l~~~~l~~~G-i~v~~vd~~-----~~e~l~~al~~~------TklV~lesPsNP~l~v~dl~~I~~ 173 (395)
T PRK05967 106 ALIVDSVYYPTRHFCDTMLKRLG-VEVEYYDPE-----IGAGIAKLMRPN------TKVVHTEAPGSNTFEMQDIPAIAE 173 (395)
T ss_pred EEEccCCcHHHHHHHHHHHHhcC-eEEEEeCCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCcHHHHHHHHH
Confidence 777888888876533 133 366666543 357788888654 678888888888999999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.||.+|+..
T Consensus 174 --------------------la~~~g~-------~vvVD~t~a~p 191 (395)
T PRK05967 174 --------------------AAHRHGA-------IVMMDNTWATP 191 (395)
T ss_pred --------------------HHHHhCC-------EEEEECCccCc
Confidence 9999999 99999999764
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00025 Score=80.28 Aligned_cols=108 Identities=7% Similarity=-0.043 Sum_probs=76.4
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++.+++.+|.+.+ ..++|+|+++++..++.+. . .+| -.|++.+-+....
T Consensus 68 ~Lr~aia~~~~~~~~----------~I~vt~Gs~e~i~~~~~~l----~------~~g---------d~vlv~~P~y~~~ 118 (366)
T PRK01533 68 TLRQTIANKLHVKME----------QVLCGSGLDEVIQIISRAV----L------KAG---------DNIVTAGATFPQY 118 (366)
T ss_pred HHHHHHHHHhCCCcc----------eEEECCCHHHHHHHHHHHh----c------CCC---------CEEEEcCCcHHHH
Confidence 356667777888754 6899999999987665542 1 122 2356666666666
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
..++.+.+.+++.|+.+ ++.+|+++|+++++.. +.+++.+...+.||.+-+.+++.+
T Consensus 119 ~~~~~~~g~~v~~v~~~-~~~~d~~~l~~~~~~~------~~~v~i~~P~NPTG~~~~~~~l~~ 175 (366)
T PRK01533 119 RHHAIIEGCEVKEVALN-NGVYDLDEISSVVDND------TKIVWICNPNNPTGTYVNDRKLTQ 175 (366)
T ss_pred HHHHHHcCCEEEEeecC-CCCcCHHHHHHHhCcC------CcEEEEeCCCCCCCCCcCHHHHHH
Confidence 66665544588899986 5679999999888643 456666778999999988776666
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.9e-05 Score=86.90 Aligned_cols=324 Identities=10% Similarity=-0.065 Sum_probs=184.3
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
+|.++-+.+. +.......-+|...++-.++.+.|.++++.|+++ .-.++++|||.+.=.++.. .+
T Consensus 15 ~~~~~~~~~~---~~~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~--------~v~~l~GsGT~a~Eaa~~n----l~ 79 (374)
T TIGR01365 15 RPGWSIEELK---NAPLGRSHRSKLGKEKLAEAIKKTREMLGVPADY--------LIGIVPASDTGAVEMALWS----ML 79 (374)
T ss_pred CchhhHHHHh---hhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCc--------EEEEECCchHHHHHHHHHH----cC
Confidence 6675333333 3344444668999999999999999999986541 2356799999887444332 11
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHH--H-HHH-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEE
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSV--E-KAG-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIF 359 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv--~-KAa-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VV 359 (943)
+ .+| ..++++. .++- . +.+ .+|..++..+..+....+|+++++. . + -|+
T Consensus 80 ~-----~~g--------~~vLv~g---~FG~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~----~--~-----~v~ 132 (374)
T TIGR01365 80 G-----CRG--------VDVLAWE---SFGKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF----K--N-----DVV 132 (374)
T ss_pred C-----CCC--------CeEEEEC---HHHHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC----C--C-----CEE
Confidence 0 011 1233333 5552 2 555 4676456777766666789998872 1 1 167
Q ss_pred EecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeee
Q psy11047 360 SGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVI 439 (943)
Q Consensus 360 aTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcF 439 (943)
.|+.-|.+|...|+++++. .+ ++. .+-|||--+.+ ..
T Consensus 133 ~vhnETSTGv~npv~~i~~--------------------~~--~~~-------lliVDavSs~g-~~------------- 169 (374)
T TIGR01365 133 FTWNGTTSGVRVPNGDFIP--------------------AD--REG-------LTICDATSAAF-AQ------------- 169 (374)
T ss_pred EecCCCchheecccccccc--------------------cc--CCC-------cEEEEccchhc-CC-------------
Confidence 9999999999999977665 22 366 78999873322 11
Q ss_pred eecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCc--------chhhhhcccCccccccCCC
Q psy11047 440 RLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNS--------GALHRTFNVEPLYLRHENS 511 (943)
Q Consensus 440 R~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~--------~~L~~af~~~p~YL~~~~~ 511 (943)
+.. + ..+|-+....+|.|+.+-. ..+...-... .|..-.
T Consensus 170 -------------------------~l~--~---d~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~-~y~~~~-- 216 (374)
T TIGR01365 170 -------------------------DLD--Y---HKLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYT-PAWPLP-- 216 (374)
T ss_pred -------------------------CCC--h---hHCcEEEEechhccCCCCceEEEEECHHHHHHHhhcC-CCCCCh--
Confidence 011 1 1379999999999992221 1221111111 121100
Q ss_pred CcccccCccccCCC-----CCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccc
Q psy11047 512 GLAIDYMHWQIPLS-----KRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKL 586 (943)
Q Consensus 512 g~~~d~~~~tie~S-----RrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~ 586 (943)
.+.++...++ +.. ....|...++...+.+.++.+.+. -|++...++
T Consensus 217 ----~~~~~~~~~~~~~~~~~~---~t~~TP~v~~l~a~~~~l~~i~~e--------------gGle~~~~R-------- 267 (374)
T TIGR01365 217 ----KIFRLTKGGKLNKKIFEG---STINTPSMLCVEDWLDALKWAESI--------------GGLKPLIAR-------- 267 (374)
T ss_pred ----hhhccccccchhhhhhcC---CCCCChHHHHHHHHHHHHHHHHHc--------------cCHHHHHHH--------
Confidence 0011111000 000 011133334444445555543220 123222221
Q ss_pred cCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC----CCccEEEEEecCCC----------hHHHHHHHHHhcc
Q psy11047 587 QTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA----RHLGMVVIRLLGEN----------ILTEKLLKRLNSK 652 (943)
Q Consensus 587 ~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~----~~l~iV~Fr~~g~n----------~l~~~Ll~~L~~~ 652 (943)
+.++|+.+.+.+.+...++++.+ +...+++|++.+.. .+...+.+.|.++
T Consensus 268 ----------------h~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (374)
T TIGR01365 268 ----------------ADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKE 331 (374)
T ss_pred ----------------HHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHC
Confidence 67899999999999866787763 23445677774321 1146788888888
Q ss_pred CcEEEeec-ccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 653 GRLHCVPA-SLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 653 G~~~~s~t-~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
|..+.... ...+ ..+|+-+....+.+||+.+++.|.=+
T Consensus 332 gi~i~~G~~~~~~-~~fRIg~~G~i~~~di~~l~~~l~~~ 370 (374)
T TIGR01365 332 GVAYDIGSYRDAP-SGLRIWCGATVEKSDLECLCPWLDWA 370 (374)
T ss_pred CEEEeccccccCC-CceEEecCCcCCHHHHHHHHHHHHHH
Confidence 86443221 2233 58999777889999999999888644
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=4e-05 Score=87.84 Aligned_cols=126 Identities=13% Similarity=0.018 Sum_probs=81.3
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
+....|.+.++|+. ++++.|.+ ..+.+++||.|+..++.+. + .+|
T Consensus 59 ~r~~~P~~~~lE~~----la~leg~~------------~av~~sSG~aAi~~al~al----l------~~G--------- 103 (384)
T PRK06434 59 TRWGNPTVQAFEEK----YAVLENAE------------HALSFSSGMGAITSAILSL----I------KKG--------- 103 (384)
T ss_pred eCCCChhHHHHHHH----HHHHhCCC------------cEEEeCCHHHHHHHHHHHH----h------CCC---------
Confidence 33467999999986 57777764 3689999999988777642 1 123
Q ss_pred eEEEecCCC---chHHH-HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 302 LVAYCSDQA---HSSVE-KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 302 ~vV~~S~~a---HySv~-KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
-.|+++... .+.+. ..+..-+..+..+++++...++ ++.+ .+.+|....-++.++.+-|+++|+
T Consensus 104 D~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~~~~-------l~~~-----~tklv~~e~~snpt~~v~Di~~I~ 171 (384)
T PRK06434 104 KRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLD-------FDPS-----NYDLIYAESITNPTLKVPDIKNVS 171 (384)
T ss_pred CEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChhhee-------ecCC-----CeeEEEEEcCCCCCceeecHHHHH
Confidence 135555432 22222 2222223477888876433332 1111 255777777788888999999999
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|+++|+ . ||++++..
T Consensus 172 ~--------------------la~~~~l-------v--VD~t~~s~ 188 (384)
T PRK06434 172 S--------------------FCHENDV-------I--VDATFASP 188 (384)
T ss_pred H--------------------HHHHcCe-------E--EECCCCCc
Confidence 9 9999987 5 59998654
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00047 Score=79.13 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=39.8
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
....+.+.+.++|.+. .+. +..++|+..+..+|+++|+++++.|.++..++.
T Consensus 350 ~~~~~~~~l~~~Gv~v-~~~---g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~ 401 (406)
T PRK12381 350 KAKQISQEAAKAGVMV-LIA---GPNVVRFAPALNISEEEITTGLDRFARACERFV 401 (406)
T ss_pred HHHHHHHHHHHCCcEE-eeC---CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888654 332 446899988887899999999999988776543
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00057 Score=78.27 Aligned_cols=144 Identities=10% Similarity=-0.030 Sum_probs=94.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|.......++...+.+|+.+.+|.+-.. ....++|+|++++...++.+- . .+| -
T Consensus 64 Y~~~~G~~~lr~aia~~~~~~~g~~~~~-------~~~I~it~G~~~al~~~~~~l----~------~~g---------d 117 (405)
T PRK09148 64 YSASKGIPGLRRAQAAYYARRFGVKLNP-------DTQVVATLGSKEGFANMAQAI----T------APG---------D 117 (405)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCcEEEcCChHHHHHHHHHHh----c------CCC---------C
Confidence 3333335677777888887777764220 015799999999976665431 1 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccH---HHhhhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSY---CCLGTA 379 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL---~eIa~~ 379 (943)
.|++.+-++.....++...+.+++.++++.++. +.+.+++.+..... .+.+++.+..++-+|.+-+. ++|.+
T Consensus 118 ~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~~~~~---~~~~v~l~~P~NPtG~~~s~~~l~~l~~- 192 (405)
T PRK09148 118 VILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEE-FFPALERAVRHSIP---KPIALIVNYPSNPTAYVADLDFYKDVVA- 192 (405)
T ss_pred EEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCC-CccCHHHHHhhccc---cceEEEEeCCCCCCCcCCCHHHHHHHHH-
Confidence 355566666666666644445888898865442 34556666543221 25677777778899988775 56666
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+.+
T Consensus 193 -------------------~a~~~~~-------~ii~De~Y~~~ 210 (405)
T PRK09148 193 -------------------FAKKHDI-------IILSDLAYSEI 210 (405)
T ss_pred -------------------HHHHcCe-------EEEEeccchhh
Confidence 8999999 99999999865
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00043 Score=78.64 Aligned_cols=162 Identities=15% Similarity=0.069 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 206 SLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 206 silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
..+.+.+...+. ....|.......++-..+.+|+.+..|++... +.....++|+|++++...++.+. +
T Consensus 44 ~~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~-----~~~~~i~it~Ga~~al~~~~~~l----~-- 111 (393)
T TIGR03538 44 AFVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRFDLPTGV-----DPERHVLPVNGTREALFAFAQAV----I-- 111 (393)
T ss_pred HHHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccC-----CCCceEEECCCcHHHHHHHHHHH----c--
Confidence 344455554433 12233322334567777888888887776210 00024678999999986665432 1
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.|| ....|++.+-........+.+-+.+++.|+++++ +.+|.++|++++... +.+++.+-.
T Consensus 112 ----~~g-------d~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~p 174 (393)
T TIGR03538 112 ----NPG-------QAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRR------CQLLFVCSP 174 (393)
T ss_pred ----CCC-------CcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhc------ceEEEEeCC
Confidence 123 1123555554554455555444458888988643 578999999888643 456666678
Q ss_pred CCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+-||.+-+ +++|.+ +|++|++ |+.+|.+|+..
T Consensus 175 ~NPtG~~~s~~~~~~l~~--------------------~a~~~~~-------~ii~De~Y~~~ 210 (393)
T TIGR03538 175 GNPTGAVLSLDTLKKLIE--------------------LADQYGF-------IIASDECYSEL 210 (393)
T ss_pred CCCcCcccCHHHHHHHHH--------------------HHHHCCE-------EEEECcchhhc
Confidence 888998866 667777 8999999 99999999855
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.1e-05 Score=85.35 Aligned_cols=331 Identities=14% Similarity=0.003 Sum_probs=187.8
Q ss_pred eEEccCCCC-hHHHHHHHHHHHHhccC---cc---ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCCh
Q psy11047 195 HAYFPALNS-YPSLLGDMLSDAINCLG---FT---WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTA 267 (943)
Q Consensus 195 ~g~~~~~~s-~~silgd~L~~alN~n~---~~---~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGG 267 (943)
+.|-+++.. ++.++..+-...+|.++ .. .--||...++-.++.+.|.+|++.|+++ .--.+++||
T Consensus 6 ~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y--------~Vlfl~Ggg 77 (364)
T PRK12462 6 LNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEY--------GVVFLQGGS 77 (364)
T ss_pred ceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCC--------eEEEEeccH
Confidence 445555554 55777777778877554 22 2236777888889999999999998752 123556668
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH---HHHHHHHCCccEEEEec----CCCCCcCHHH
Q psy11047 268 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS---VEKAGLIGLVNMRYIES----DDKLSLRGDK 340 (943)
Q Consensus 268 TeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS---v~KAa~LG~~~v~~Vp~----D~~grmD~da 340 (943)
|.+.=.+++. ++ .+| .+...|+. ..++| .+.|..+|. +..+.. +...-.++++
T Consensus 78 T~~~ea~~~N----ll------~~g-------~~~~~~~~-tG~fg~r~~~ea~~~g~--v~~~~~~~~~~~~~~p~~~~ 137 (364)
T PRK12462 78 SLQFSMIPMN----FS------RPG-------AAAPEYVT-TGYWSRKAIGEASRVAA--MRVVWDGAASGYRTLPSLAE 137 (364)
T ss_pred HHHHHHHHHH----cC------CCC-------CcEEEEEe-CCHHHHHHHHHHHhcCC--ceEecCcCCCCCCcCCCHHH
Confidence 8776444332 11 111 11221332 35554 344446774 333332 1122345555
Q ss_pred HHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhh
Q psy11047 341 LIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 420 (943)
Q Consensus 341 Le~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~ 420 (943)
++ +..+ ..+|..|+..|.+|.-.| + +.+.++. .+-+|+.-
T Consensus 138 ~~--~~~d------~~~v~~t~NETstGv~~~-----~--------------------~~~~~~~-------llvvD~sS 177 (364)
T PRK12462 138 LD--WDAR------APFRHYVSNETVEGLQFP-----D--------------------AAGLPDS-------PLIADMSS 177 (364)
T ss_pred hc--cCCC------CcEEEEccCCCCceEecC-----c--------------------ccccCCC-------eEEEEcCc
Confidence 41 2222 457999999999998876 2 2223455 67788763
Q ss_pred cCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC--------ccCc
Q psy11047 421 LGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR--------VKNS 492 (943)
Q Consensus 421 GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~--------vr~~ 492 (943)
+-. . .+.. +...|-|....+|.++ ++++
T Consensus 178 ~~~-s--------------------------------------~pid-----~~~~dvi~agsQKnlgP~Gltvvivs~~ 213 (364)
T PRK12462 178 DFM-S--------------------------------------RPFD-----VEAYGMVYAHAQKNLGPAGVTVAIIRRA 213 (364)
T ss_pred hhh-C--------------------------------------CCCC-----hHHccEEEeeccccCCCCceEEEEECHH
Confidence 322 1 0111 1234889999999998 2222
Q ss_pred chhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccch
Q psy11047 493 GALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGT 572 (943)
Q Consensus 493 ~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~ 572 (943)
.+...-...|.|+. +..+--..+ +|.|.-.+.+.++...++.+++.. -|+
T Consensus 214 -al~~~~~~~p~~ld---------y~~~~~~~s-------~~nTPpv~~iy~l~~~l~~i~~e~-------------GGl 263 (364)
T PRK12462 214 -LLERVPDTLPPMLD---------FRTHVEHRS-------NYNTPPVFAIYVMALVLRWIRDEI-------------GGV 263 (364)
T ss_pred -HHhhccccCCchhh---------HHHHHhcCC-------CCCCchHHHHHHHHHHHHHHHHhc-------------cCH
Confidence 12111111122221 111000111 111333333444444555433200 134
Q ss_pred hhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEec----CCCccEEEEEecCCChHHHHHHHH
Q psy11047 573 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPA----ARHLGMVVIRLLGENILTEKLLKR 648 (943)
Q Consensus 573 ~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~----~~~l~iV~Fr~~g~n~l~~~Ll~~ 648 (943)
+.+.++ +.+.|+.+++.|.+.++|.... .+..--|+|++.+ .++..++++.
T Consensus 264 ~~~~~r------------------------~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~-~~l~~~f~~~ 318 (364)
T PRK12462 264 HAMRDI------------------------NARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQ-PRLDTLFKEQ 318 (364)
T ss_pred HHHHHH------------------------HHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCC-HHHHHHHHHH
Confidence 333222 6788999999999998666542 2345567899865 3678899999
Q ss_pred HhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 649 LNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 649 L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
..++|.+.+.. ++..+-+|+++...++.++|+.+++.+++..++
T Consensus 319 a~~~gl~~lkG--hr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 319 STEAGFCGLSG--HRSIGGIRASLYNAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred HHHCCCccccC--CcccCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999765433 333455999999999999999999999887543
|
|
| >KOG2862|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00012 Score=80.83 Aligned_cols=164 Identities=12% Similarity=0.101 Sum_probs=106.6
Q ss_pred EccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHH
Q psy11047 197 YFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLL 276 (943)
Q Consensus 197 ~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~ 276 (943)
+.|++...+ +-+..++|.|+.. ..||.+..+-.+|++-+...|.-... .--+|..+|+-+-=.||.
T Consensus 21 ~gPGPsnl~----~~V~~A~~~~~lg-h~sPe~~qIm~~v~egikyVFkT~n~---------~tf~isgsGh~g~E~al~ 86 (385)
T KOG2862|consen 21 LGPGPSNLS----GRVQEAMSRPSLG-HMSPEFVQIMDEVLEGIKYVFKTANA---------QTFVISGSGHSGWEAALV 86 (385)
T ss_pred ecCCCcCCC----HHHHHhhcCCccc-cCCHHHHHHHHHHHHHHHHHhccCCC---------ceEEEecCCcchHHHHHH
Confidence 445554433 3333455544332 46899999999999888888865432 123555556655433332
Q ss_pred HHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcE
Q psy11047 277 AGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPF 356 (943)
Q Consensus 277 aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~ 356 (943)
. .+ .||. .-+++.+..-.|-..+-+-++|. +|..|+.+--+....+++++.|... .|.
T Consensus 87 N----~l------ePgd------~vLv~~~G~wg~ra~D~~~r~ga-~V~~v~~~~G~~~~le~i~~~lsqh-----~p~ 144 (385)
T KOG2862|consen 87 N----LL------EPGD------NVLVVSTGTWGQRAADCARRYGA-EVDVVEADIGQAVPLEEITEKLSQH-----KPK 144 (385)
T ss_pred h----hc------CCCC------eEEEEEechHHHHHHHHHHhhCc-eeeEEecCcccCccHHHHHHHHHhc-----CCc
Confidence 1 11 1331 11233333333433333335665 8888888877788999999999885 488
Q ss_pred EEEEecCCCccccccc-HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhh--hcCC
Q psy11047 357 FIFSGLALPAFLVVDS-YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL--VLGD 423 (943)
Q Consensus 357 ~VVaTaGTT~tGaIDp-L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA--~GG~ 423 (943)
+|+.|+|-+.||...| ++.+.+ +|++|+. .+-||+. +||-
T Consensus 145 ~vfv~hgdsSTgV~q~~~~~~g~--------------------lc~k~~~-------lllVD~VaSlggt 187 (385)
T KOG2862|consen 145 AVFVTHGDSSTGVLQDLLAISGE--------------------LCHKHEA-------LLLVDTVASLGGT 187 (385)
T ss_pred eEEEEecCccccccchHHHHHHH--------------------HhhcCCe-------EEEEechhhcCCc
Confidence 9999999999999999 556666 9999999 8999976 5554
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.9e-05 Score=88.28 Aligned_cols=313 Identities=14% Similarity=0.086 Sum_probs=155.9
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce-
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL- 302 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~- 302 (943)
...-...++|..+.+.+.+|||+.+..+ ..-+=..+||.||+.++.+- + .||- +.
T Consensus 59 ~G~~~id~iE~la~~ra~~lF~~~~~~w-------~anvqp~SGs~An~av~~aL----l------~pGD-------~Im 114 (399)
T PF00464_consen 59 GGCEYIDEIEELAIERAKELFGAEPKEW-------YANVQPHSGSQANLAVYMAL----L------KPGD-------TIM 114 (399)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHT-STTTE-------EEE---SSHHHHHHHHHHHH----T-------TT--------EEE
T ss_pred cCcchhhHHHHHHHHHHHHHhCCCcccc-------eEEeecCCchHHHHHHHHHH----H------hhcC-------cEE
Confidence 3446788999999999999999985421 01245678999997766541 1 1331 11
Q ss_pred EEEecCCCchHHHHHH-H-----HCC-ccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHH
Q psy11047 303 VAYCSDQAHSSVEKAG-L-----IGL-VNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYC 374 (943)
Q Consensus 303 vV~~S~~aHySv~KAa-~-----LG~-~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~ 374 (943)
.+=.+.-.|.|-.... . .|. -++...++| +++.+|.+++++.+++.. |.+|++ |.+..--.-|++
T Consensus 115 ~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~k-----PklIi~--G~S~y~~~~d~~ 187 (399)
T PF00464_consen 115 GLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHK-----PKLIIC--GASSYPRPIDFK 187 (399)
T ss_dssp EEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH-------SEEEE--E-SSTSS---HH
T ss_pred ecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcC-----CCEEEE--CchhccCccCHH
Confidence 1223455676643322 1 221 256677887 789999999999998763 666664 333333345588
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHH
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKR 454 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~ 454 (943)
++.+ +|++.|. ++++|+|+-++ .. .
T Consensus 188 ~~re--------------------Iad~vga-------~l~~D~sH~~G-LI--a------------------------- 212 (399)
T PF00464_consen 188 RFRE--------------------IADEVGA-------YLMADISHIAG-LI--A------------------------- 212 (399)
T ss_dssp HHHH--------------------HHHHTT--------EEEEE-TTTHH-HH--H-------------------------
T ss_pred HHHH--------------------HHHhcCc-------EEEeccccccc-ce--e-------------------------
Confidence 8888 9999999 99999996443 10 0
Q ss_pred hhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCC------CcccccC-ccccCCCCC
Q psy11047 455 LNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENS------GLAIDYM-HWQIPLSKR 527 (943)
Q Consensus 455 l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~------g~~~d~~-~~tie~SRr 527 (943)
.|. +-.+ +++||-+|.+.||.|.=+.+..+-. +.....+...+. ...++.. ..+.+++=.
T Consensus 213 ---~g~-~~~P-------~~~ADvvt~sThKtl~GPrggiI~~--~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h 279 (399)
T PF00464_consen 213 ---GGL-FPNP-------FPYADVVTGSTHKTLRGPRGGIILT--NKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPH 279 (399)
T ss_dssp ---TTS-S--G-------CCTSSEEEEESSGGG-SSS-EEEEE--S-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--
T ss_pred ---hhe-ecCc-------cccceEEEeeccccccccCceEEEE--cCCccccCCcccccHHHHHHHhccccCCCcccCcc
Confidence 010 1111 3579999999999999333222100 000000000000 0001100 012222211
Q ss_pred c-chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHH
Q psy11047 528 F-RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRL 606 (943)
Q Consensus 528 f-rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~L 606 (943)
. +..++-.+++..-...++++.++ -++.
T Consensus 280 ~~~iaalAval~ea~~~~fk~Ya~q---------------------------------------------------Vv~N 308 (399)
T PF00464_consen 280 MHRIAALAVALKEALSPEFKEYAKQ---------------------------------------------------VVKN 308 (399)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHH---------------------------------------------------HHHH
T ss_pred hhHHHHHHHHHhcccCHHHHHHHHH---------------------------------------------------HHHH
Confidence 1 11122223333322334444444 3567
Q ss_pred HHHHHHHHhCCCCeEEec-CCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccC------CCcEEEEe----ecCC
Q psy11047 607 AQKFEALVLGDPRFEIPA-ARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR------IQGLGRAQ----NFTR 675 (943)
Q Consensus 607 A~~l~~~L~~~p~~eIl~-~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~------g~~~lR~v----~~~~ 675 (943)
|+.|++.|.+. ++.|+. -.+..+|...+...+.-.....++|.+.|.+ +....+. ...-||+- +..-
T Consensus 309 Ak~La~~L~~~-G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~-vnkn~iP~d~~~~~~sGlRlGT~~lT~rG 386 (399)
T PF00464_consen 309 AKALAEALQER-GFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGII-VNKNTIPGDRSPFVPSGLRLGTPALTRRG 386 (399)
T ss_dssp HHHHHHHHHHT-T-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE--EEE--TTTSTTTT-SEEEEESHHHHHTT
T ss_pred HHHHHHHHhhC-CcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCee-ecccccCCCCCCCCCCEEEECCHHHHhCC
Confidence 78888888774 899985 3467778777754321234555667777753 3322221 13579993 3455
Q ss_pred CCHHHHHHHHHHH
Q psy11047 676 TTNDDITRDWNEI 688 (943)
Q Consensus 676 tt~edId~ll~~I 688 (943)
..++|+..+.+.|
T Consensus 387 ~~e~dm~~iA~~I 399 (399)
T PF00464_consen 387 MKEEDMKEIAELI 399 (399)
T ss_dssp --HHHHHHHHHHH
T ss_pred CCHHHHHHHHhhC
Confidence 5678877776544
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00075 Score=76.42 Aligned_cols=142 Identities=9% Similarity=0.003 Sum_probs=93.1
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCC-cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPG-GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~-~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
.|...+...++-..+.+|+.+..|++-. .. ..++|+|++++...++.+- + .+|
T Consensus 63 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~--------~~~~I~it~Gs~~al~~~~~~l----~------~~g-------- 116 (388)
T PRK07366 63 GYLLFHGTLDFREAAAQWYEQRFGLAVD--------PETEVLPLIGSQEGTAHLPLAV----L------NPG-------- 116 (388)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcCC--------CcCeEEECCCcHHHHHHHHHHh----C------CCC--------
Confidence 3443444556777788888877776432 12 3678999999986655431 1 122
Q ss_pred ceEEEecCCCchHHHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHH
Q psy11047 301 RLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCC 375 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~e 375 (943)
+ .|++.+-+.......+...+.+++.||.+++ ..+|.+++++.+... +.+++.+-..+-||.+-+ +++
T Consensus 117 d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~p~NPTG~~~s~~~~~~ 189 (388)
T PRK07366 117 D-FALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQ------ARLMVLSYPHNPTTAIAPLSFFQE 189 (388)
T ss_pred C-EEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhccc------ceEEEEeCCCCCCCccCCHHHHHH
Confidence 2 2444454554455555544457888998743 467888887776432 445566667888998866 455
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|.+ +|++||+ |+-+|-+|+-+
T Consensus 190 l~~--------------------~a~~~~~-------~ii~De~Y~~~ 210 (388)
T PRK07366 190 AVA--------------------FCQQHDL-------VLVHDFPYVDL 210 (388)
T ss_pred HHH--------------------HHHHcCe-------EEEEecchhhc
Confidence 666 8999999 99999999765
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0011 Score=74.96 Aligned_cols=140 Identities=8% Similarity=-0.094 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHHHHHHhC----CCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 227 PACTELEIITMNWLGKMIG----LPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG----~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
+...++...+.+|+.+..| .+. ...++|+|++++...++.+. + .+| +-
T Consensus 66 ~G~~~Lr~aia~~~~~~~~~~~~v~~----------~~I~it~Ga~~al~~~~~~~----~------~~g--------~~ 117 (374)
T PRK02610 66 GGHEALKQAIAEYVNESAAGSSQITP----------ANISVGNGSDELIRSLLIAT----C------LGG--------EG 117 (374)
T ss_pred CchHHHHHHHHHHhCccccccCCCCH----------HHEEEcCChHHHHHHHHHHH----c------CCC--------CC
Confidence 4456666667777766542 332 25789999999986555431 1 011 11
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
.|++.+-+......++...+.+++.++.++ ++.+|+++|+++++... +..+.+++.+--.+-||.+-+.+++..
T Consensus 118 ~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~--~~~~k~i~l~~P~NPTG~~~s~~~l~~--- 192 (374)
T PRK02610 118 SILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQ--NPPVRVVFVVHPNSPTGNPLTAAELEW--- 192 (374)
T ss_pred eEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhc--CCCceEEEEeCCCCCCCCCCCHHHHHH---
Confidence 355555555556666654445788888865 47899999999986421 112566766667888999988766655
Q ss_pred ccccccccccccCchHHHHH-HcCCCCCccchhhhHHhhhcCC
Q psy11047 382 VKGLGFYKMKLQTNFPNFIL-SYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar-~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++ .+++ |+-+|-+|.-+
T Consensus 193 -----------------l~~~~~~~-------~iI~De~Y~~~ 211 (374)
T PRK02610 193 -----------------LRSLPEDI-------LVVIDEAYFEF 211 (374)
T ss_pred -----------------HHhccCCc-------EEEEecccccc
Confidence 332 1477 99999999754
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00064 Score=77.28 Aligned_cols=159 Identities=13% Similarity=0.078 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCC-ccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 207 LLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP-EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 207 ilgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p-~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
.+.+.+...++. ...|.......++-..+.+|+.+..|++ -.. ....++|+|++++...++.+- .
T Consensus 46 ~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-------~~~i~it~G~~~al~~~~~~l----~-- 111 (396)
T PRK09147 46 FIKDALAANLDG-LASYPTTAGLPALREAIAAWLERRYGLPALDP-------ATQVLPVNGSREALFAFAQTV----I-- 111 (396)
T ss_pred HHHHHHHHHhhh-hcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCc-------cceEEECCChHHHHHHHHHHH----c--
Confidence 344444444432 2334433344567677888888887865 210 014678999999986555431 1
Q ss_pred hcccCC-CchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEec
Q psy11047 286 YQQSHP-ELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGL 362 (943)
Q Consensus 286 ~~~~~p-Gl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTa 362 (943)
.+ | ....|++.+-+......++.+.+.+++.||+++ .+.+|+++|++.+... +.+++.+-
T Consensus 112 ----~~~~-------~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~------~k~i~l~n 174 (396)
T PRK09147 112 ----DRDG-------PGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWAR------TQLLFVCS 174 (396)
T ss_pred ----CCCC-------CCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhc------cEEEEEcC
Confidence 12 1 012355554444445556655445889999864 3579999998877542 45666667
Q ss_pred CCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 363 ALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 363 GTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
..+-||.+-+ +++|.+ +|++|++ |+-+|-+|+-+
T Consensus 175 P~NPTG~~~s~~~~~~l~~--------------------~a~~~~~-------~ii~De~y~~~ 211 (396)
T PRK09147 175 PGNPTGAVLPLDDWKKLFA--------------------LSDRYGF-------VIASDECYSEI 211 (396)
T ss_pred CCCCcCccCCHHHHHHHHH--------------------HHHHcCe-------EEEeecccccc
Confidence 7888998865 566666 8999999 99999999865
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00023 Score=81.76 Aligned_cols=277 Identities=16% Similarity=0.155 Sum_probs=165.6
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....+|+.+ ++|-|.. ..+++++|..|...++.+- ++ +| -.
T Consensus 52 ~gnPt~~~le~~l----a~Le~g~------------~a~~~~SGmaAi~~~l~~l----l~------~G---------d~ 96 (386)
T PF01053_consen 52 YGNPTVRALEQRL----AALEGGE------------DALLFSSGMAAISAALLAL----LK------PG---------DH 96 (386)
T ss_dssp TC-HHHHHHHHHH----HHHHT-S------------EEEEESSHHHHHHHHHHHH----S-------TT---------BE
T ss_pred cccccHHHHHHHH----HHhhccc------------ceeeccchHHHHHHHHHhh----cc------cC---------Cc
Confidence 4578888888754 7777653 4678899988887776642 11 22 23
Q ss_pred EEecCCCchHHHHHHH--H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAGL--I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa~--L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++........+-+. + .+.++..++. -|+++++++|+++ +.+|..-..++.+.-+-||+.|++
T Consensus 97 iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~-----~d~~~l~~~l~~~------t~~v~~EspsNP~l~v~Dl~~i~~- 164 (386)
T PF01053_consen 97 IVASDDLYGGTYRLLEELLPRFGVEVTFVDP-----TDLEALEAALRPN------TKLVFLESPSNPTLEVPDLEAIAK- 164 (386)
T ss_dssp EEEESSSSHHHHHHHHHCHHHTTSEEEEEST-----TSHHHHHHHHCTT------EEEEEEESSBTTTTB---HHHHHH-
T ss_pred eEecCCccCcchhhhhhhhcccCcEEEEeCc-----hhHHHHHhhcccc------ceEEEEEcCCCcccccccHHHHHH-
Confidence 5666665544444441 2 3456777755 3699999999885 667777778888888889999999
Q ss_pred ccccccccccccccCchHHHHHHcC-CCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhcc
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYF-PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK 458 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~G-l~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~ 458 (943)
+|+++| + .+-||..|+.. .+
T Consensus 165 -------------------~a~~~g~~-------~~vVDnT~atp-~~-------------------------------- 185 (386)
T PF01053_consen 165 -------------------LAKEHGDI-------LVVVDNTFATP-YN-------------------------------- 185 (386)
T ss_dssp -------------------HHHHTTT--------EEEEECTTTHT-TT--------------------------------
T ss_pred -------------------HHHHhCCc-------eEEeeccccce-ee--------------------------------
Confidence 999999 9 99999999876 22
Q ss_pred CcccccchhhhhcCCCCeeEEEEcCCCccC-----------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCC
Q psy11047 459 GRLHCVPASLRIQGLGRAQNFTIVPSSLLR-----------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR 527 (943)
Q Consensus 459 G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-----------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr 527 (943)
..+.. -.||-+.-+..|+++ +++...+...+.. +....+--
T Consensus 186 ----~~pL~------~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~------------------~~~~~G~~ 237 (386)
T PF01053_consen 186 ----QNPLE------LGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLRE------------------FRRLLGAT 237 (386)
T ss_dssp ----C-GGG------GT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHH------------------HHHHHT-B
T ss_pred ----eccCc------CCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcc------------------hhhhcCcc
Confidence 11111 148999999999887 1221111110000 00000112
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHH
Q psy11047 528 FRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 607 (943)
Q Consensus 528 frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA 607 (943)
..+..+|+.++ |..-|.-++++ +.+.|
T Consensus 238 ~~p~da~ll~r--gl~Tl~~R~~~---------------------------------------------------~~~nA 264 (386)
T PF01053_consen 238 LSPFDAWLLLR--GLRTLPLRMER---------------------------------------------------QNENA 264 (386)
T ss_dssp --HHHHHHHHH--HHTTHHHHHHH---------------------------------------------------HHHHH
T ss_pred chHHHHHHHhc--CCCcHHHHHHH---------------------------------------------------HHHHH
Confidence 23556676665 55666666665 46678
Q ss_pred HHHHHHHhCCCCeE-EecC----------------CCccEEEEEecCCChHHHHHHHHHhc--c----C---cEEEeecc
Q psy11047 608 QKFEALVLGDPRFE-IPAA----------------RHLGMVVIRLLGENILTEKLLKRLNS--K----G---RLHCVPAS 661 (943)
Q Consensus 608 ~~l~~~L~~~p~~e-Il~~----------------~~l~iV~Fr~~g~n~l~~~Ll~~L~~--~----G---~~~~s~t~ 661 (943)
+++++.|++.|.++ |..| .-.++++|.+++..+...++.++|+- . | -+.+.|..
T Consensus 265 ~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~ 344 (386)
T PF01053_consen 265 EALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALKLFSIAPSLGGVESLISHPAS 344 (386)
T ss_dssp HHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-SSSEESSS-SSSS-EEEETTC
T ss_pred HHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhhhHhhhhhcCCcccccccccc
Confidence 88888899999887 3332 23589999998754345677777652 1 1 12222211
Q ss_pred --c----------CC--CcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 662 --L----------RI--QGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 662 --~----------~g--~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
+ .| .+.+|++++.. |++.+++.|++.
T Consensus 345 ~~h~~~~~e~~~~~Gi~~~liRlSvGlE----d~~dLi~Dl~~A 384 (386)
T PF01053_consen 345 TSHRSLSPEERAEAGISDGLIRLSVGLE----DPDDLIADLEQA 384 (386)
T ss_dssp TTTTTSCHHHHHHTTS-TTEEEEE--SS-----HHHHHHHHHHH
T ss_pred hhhccCChhhhhccCCCCCeeEEEeccC----CHHHHHHHHHHh
Confidence 1 11 46899988754 667777766654
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0015 Score=75.69 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=40.2
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
....+.+.+.++|.++.. . -....++|+..+..+|+++|+++++.|.++..++
T Consensus 378 ~~~~~~~~l~~~Gv~~~~-~-g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~ 430 (433)
T PRK08117 378 AVEKILDKCLEKGLLFYL-C-GNAGNVLRMIPPLTVTKEEIDEGLDILDEALTEY 430 (433)
T ss_pred HHHHHHHHHHHCCCEEee-c-CCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 456777888888975532 2 1224689998888999999999999998887655
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0017 Score=74.35 Aligned_cols=128 Identities=9% Similarity=-0.025 Sum_probs=81.1
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+.|+++.+.+ ...|+.+||+||..|+..||.+.... .+ ...+.++.+...-|-+.
T Consensus 86 ~l~~~l~~~~~~~------------~~~~~~sGseA~e~a~klar~~~~~~-----~~-----~~~~~ii~~~~~~HG~~ 143 (403)
T PRK05093 86 RLAKKLIDATFAE------------RVFFANSGAEANEAAFKLARRYACDR-----HG-----PEKTEIIAFHNSFHGRT 143 (403)
T ss_pred HHHHHHHhhCCCC------------EEEEeCchHHHHHHHHHHHHHHHhhc-----CC-----CCCCeEEEEcCCcCCch
Confidence 4445566666442 46899999999999999998764321 01 01334566677777765
Q ss_pred HHHHHHCC------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccc-cc----ccHHHhh
Q psy11047 315 EKAGLIGL------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFL-VV----DSYCCLG 377 (943)
Q Consensus 315 ~KAa~LG~------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tG-aI----DpL~eIa 377 (943)
.-+..++. ..+..++-+ |.+++++.+..+ +.+|+.. ....+| .+ +.+++|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~aaiiie-p~~~~gg~~~~~~~~l~~l~ 211 (403)
T PRK05093 144 LFTVSVGGQPKYSDGFGPKPADITHVPFN-----DLAAVKAVIDDH------TCAVVVE-PIQGEGGVIPATPEFLQGLR 211 (403)
T ss_pred hhhHhhcCChhhhhcCCCCCCCcEEeCCC-----CHHHHHHHhcCC------eEEEEEe-cccCCCCCccCCHHHHHHHH
Confidence 54433221 123333332 688888888532 4455554 333343 33 2388888
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|++||+ ++.+|-+|.+.
T Consensus 212 ~--------------------l~~~~g~-------~lI~DEv~~g~ 230 (403)
T PRK05093 212 E--------------------LCDQHNA-------LLIFDEVQTGM 230 (403)
T ss_pred H--------------------HHHHcCC-------EEEEechhhCC
Confidence 8 9999999 99999999876
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0026 Score=73.71 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=45.9
Q ss_pred EEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 630 MVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 630 iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
++.+.+.+ ......+.+.+.++|.+ +.+... ....||+.+....|+++|+++++.|.++..++.+
T Consensus 355 ~~~i~l~~-~~~~~~l~~~~~~~Gv~-~~~~~~-~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~~ 419 (425)
T PRK09264 355 MQGIDFGD-GELAGKIAAEAFENGLI-IETSGP-EDEVVKLLPPLTIDEEELEEGLDILEEAVAEVLA 419 (425)
T ss_pred EEEEEecC-hHHHHHHHHHHHHCCCE-EeccCC-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 33555543 34566788888889964 443221 2357888888889999999999999998877643
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00039 Score=81.54 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
..+|-..+.+|+.+.+|.+... +....++|+|+++++...+.+-. .|| -.|++.+
T Consensus 88 ~~~LR~aiA~~l~~~~~~~~~v------~~~~Iiit~Ga~~al~~l~~~l~----------~pG---------d~Vlv~~ 142 (468)
T PLN02450 88 LPAFKNALAEFMSEIRGNKVTF------DPNKLVLTAGATSANETLMFCLA----------EPG---------DAFLLPT 142 (468)
T ss_pred hHHHHHHHHHHHHHhhCCCCCc------ChHHeEEccChHHHHHHHHHHhC----------CCC---------CEEEECC
Confidence 3456667778887776643110 01358899999999766655311 122 2355555
Q ss_pred CCchHHHHHHH-HCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccc
Q psy11047 309 QAHSSVEKAGL-IGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIV 382 (943)
Q Consensus 309 ~aHySv~KAa~-LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~ 382 (943)
-........+. ..+.+++.|+++ +...+|+++|++++....+++..+.+++.+-..+-||.+-+ +++|.+
T Consensus 143 P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~---- 218 (468)
T PLN02450 143 PYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVD---- 218 (468)
T ss_pred CCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHH----
Confidence 55555555554 344578888874 45678999999998875555555777777778889998866 455566
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++|++ |+-+|-+|+..
T Consensus 219 ----------------~a~~~~~-------~iI~DE~Y~~~ 236 (468)
T PLN02450 219 ----------------FITAKNI-------HLISDEIYSGT 236 (468)
T ss_pred ----------------HHHHCCc-------EEEEEcccccc
Confidence 8999999 99999999875
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00066 Score=75.52 Aligned_cols=121 Identities=5% Similarity=-0.140 Sum_probs=81.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+++.+|+.+|.+.. ..++|+|++++...++.. +. + ++ +++. +-+....
T Consensus 44 ~lr~~ia~~~~~~~~----------~I~it~Gs~~~l~~~~~~-----~~------~--------~~-vv~~-~P~y~~y 92 (332)
T PRK06425 44 DIEDQIKIYTQGLKI----------KVLIGPGLTHFIYRLLSY-----IN------V--------GN-IIIV-EPNFNEY 92 (332)
T ss_pred HHHHHHHHHhCCCcc----------eEEECCCHHHHHHHHHHH-----hC------C--------Cc-EEEe-CCChHHH
Confidence 456677888888754 588999999997665431 11 1 12 3444 4455555
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~ 391 (943)
..++...+.+++.||+++ ..+|.+.+++ . .+.+|+.+-..+-||.+-+ +.+|.+
T Consensus 93 ~~~~~~~G~~v~~vp~~~-~~~~~~~l~~----~-----~~k~v~l~nP~NPTG~~~s~~~~~~l~~------------- 149 (332)
T PRK06425 93 KGYAFTHGIRISALPFNL-INNNPEILNN----Y-----NFDLIFIVSPDNPLGNLISRDSLLTISE------------- 149 (332)
T ss_pred HHHHHHcCCeEEEEeCCc-ccCcHHHHhh----c-----CCCEEEEeCCCCCcCCccCHHHHHHHHH-------------
Confidence 666655555889999875 4456554432 1 2456666678888998866 555566
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.|+++|+ |+-+|-+|+-+
T Consensus 150 -------~a~~~~~-------~iI~DE~Y~~~ 167 (332)
T PRK06425 150 -------ICRKKGA-------LLFIDEAFIDF 167 (332)
T ss_pred -------HHHHcCC-------EEEEecchhcc
Confidence 7899999 99999999865
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0014 Score=76.95 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=47.9
Q ss_pred cEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 629 GMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAEL 699 (943)
Q Consensus 629 ~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~ 699 (943)
.++.+.+.. +.....+.+.+.++|.+ +.++ ..+..++|+......|++||+++++.+.++..++.+..
T Consensus 389 l~~giel~~-~~~~~~i~~~l~~~Gvl-~~~~-~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~~~~ 456 (459)
T PRK11522 389 MLMAIEFVD-NEIGYNFASEMFRQRVL-VAGT-LNNAKTIRIEPPLTLTIEQCEQVLKAARKALAAMRVSV 456 (459)
T ss_pred eEEEEEecC-chHHHHHHHHHHHCCeE-EEec-CCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555543 23456778888888854 4433 23456899988889999999999999999887765543
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00019 Score=80.95 Aligned_cols=155 Identities=13% Similarity=0.105 Sum_probs=100.5
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 221 FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 221 ~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
.+.-+-|.+..+|+++ +.|=|- ..++-|++|..|..+|++.- . ++| +.+..
T Consensus 56 YsRi~NPT~~vlE~Ri----AaLEGG------------~aa~a~aSG~AA~~~ai~~l-----a-----~aG---D~iVs 106 (426)
T COG2873 56 YTRIMNPTTDVLEERI----AALEGG------------VAALAVASGQAAITYAILNL-----A-----GAG---DNIVS 106 (426)
T ss_pred eeeccCchHHHHHHHH----HHhhcc------------hhhhhhccchHHHHHHHHHh-----c-----cCC---CeeEe
Confidence 4455778899999865 333222 34678899999999888751 1 233 11111
Q ss_pred ceEEEecCCCchHHHHHH-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 301 RLVAYCSDQAHSSVEKAG-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
-..+|-. ++.-+.-.. .+| ..++.|..+ |++.++++|+++. .+|.+-.-.+-.+.|-|++.|++
T Consensus 107 s~~LYGG--T~~lf~~tl~~~G-i~v~fvd~~-----d~~~~~~aI~~nT------kavf~EtigNP~~~v~Die~ia~- 171 (426)
T COG2873 107 SSKLYGG--TYNLFSHTLKRLG-IEVRFVDPD-----DPENFEAAIDENT------KAVFAETIGNPGLDVLDIEAIAE- 171 (426)
T ss_pred eccccCc--hHHHHHHHHHhcC-cEEEEeCCC-----CHHHHHHHhCccc------ceEEEEeccCCCccccCHHHHHH-
Confidence 1112211 121122233 234 478888765 4999999999984 44444333344567778999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKG 459 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G 459 (943)
+|+++|+ .+-||-.++.. .
T Consensus 172 -------------------iAh~~gv-------pliVDNT~atp-y---------------------------------- 190 (426)
T COG2873 172 -------------------IAHRHGV-------PLIVDNTFATP-Y---------------------------------- 190 (426)
T ss_pred -------------------HHHHcCC-------cEEEecCCCcc-e----------------------------------
Confidence 9999999 99999999875 3
Q ss_pred cccccchhhhhcCCCCeeEEEEcCCCccC
Q psy11047 460 RLHCVPASLRIQGLGRAQNFTIVPSSLLR 488 (943)
Q Consensus 460 ~~~~p~~r~~l~Gie~ADSItiDpHK~L~ 488 (943)
++.+.. ..||-|.=+.-||++
T Consensus 191 --l~rP~~------hGADIVvHS~TK~ig 211 (426)
T COG2873 191 --LCRPIE------HGADIVVHSATKYIG 211 (426)
T ss_pred --ecchhh------cCCCEEEEeeccccc
Confidence 233333 368999999999998
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.002 Score=72.02 Aligned_cols=123 Identities=6% Similarity=-0.040 Sum_probs=86.4
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+++++++.+|.+.+ ..++|+|++++....+.+ + +| + .|+++.-.+...
T Consensus 59 ~lr~~ia~~~~~~~~----------~I~~t~G~~~~l~~~~~~-----~-------~g--------d-~V~v~~P~y~~~ 107 (337)
T PRK03967 59 PLREAIAEFYGLDAE----------NIAVGNGSDELISYLVKL-----F-------EG--------K-HIVITPPTFGMY 107 (337)
T ss_pred HHHHHHHHHhCcCcc----------eEEEcCCHHHHHHHHHHH-----h-------CC--------C-eEEEeCCChHHH
Confidence 355666777776543 678999999987433221 1 12 1 255566566555
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++...+.+++.++.++++.+|++++++.+.. +.+++.+...+-+|.+-+.+++.+
T Consensus 108 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~-------~~~v~~~~P~NPtG~~~~~~~l~~---------------- 164 (337)
T PRK03967 108 SFYAKLNGIPVIDVPLKEDFTIDGERIAEKAKN-------ASAVFICSPNNPTGNLQPEEEILK---------------- 164 (337)
T ss_pred HHHHHHcCCeEEEeecCCCCCcCHHHHHHhccC-------CCEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 555554445888999988889999999875421 234556778899999999999998
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++ +++ ++.+|.+|..+
T Consensus 165 ----i~~-~~~-------~ii~De~y~~~ 181 (337)
T PRK03967 165 ----VLE-TGK-------PVVLDEAYAEF 181 (337)
T ss_pred ----HHh-cCC-------EEEEECchhhh
Confidence 885 789 99999999754
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0016 Score=77.41 Aligned_cols=54 Identities=7% Similarity=-0.130 Sum_probs=40.5
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAELA 700 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~~ 700 (943)
...+.+.+.++|.+.. + .+ ..+|+.....+|++||+++++.++++...+....+
T Consensus 444 ~~~i~~~~~~~Gvl~~-~---~g-~~lrl~Ppl~it~eeid~~~~~l~~al~~~~~~~~ 497 (504)
T PLN02760 444 GAYFGAECKKRGMLVR-V---AG-DNIMMSPPLIITPEEVDELISIYGKALKATEERVA 497 (504)
T ss_pred HHHHHHHHHhCCcEEE-e---cC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888896543 2 12 46888887889999999999999999887754444
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00018 Score=81.64 Aligned_cols=140 Identities=14% Similarity=0.105 Sum_probs=94.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|...-...++|..+++...+|||.... -+=-.+||.||+.++++- + .||-+ + +
T Consensus 64 YgGce~VD~vE~laierak~LFga~~a-----------nVQPhSGs~AN~av~~Al----l------~pGDt---i---m 116 (413)
T COG0112 64 YGGCEYVDEVEELAIERAKKLFGAEYA-----------NVQPHSGSQANQAVYLAL----L------QPGDT---I---M 116 (413)
T ss_pred cCCCeeHHHHHHHHHHHHHHHhCCCcc-----------ccCCCCchHHHHHHHHHH----c------CCCCe---E---e
Confidence 445567889999999999999999753 234567899998776642 1 24421 1 1
Q ss_pred EEEecCCCchHHH-HHHHHCC-ccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 303 VAYCSDQAHSSVE-KAGLIGL-VNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 303 vV~~S~~aHySv~-KAa~LG~-~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
-+-.+.-.|-+-. +.-..|. -+++.-++| +++.+|.|++++.+.+.+ |.++++ |....--.-|++++.+
T Consensus 117 gm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~k-----PK~ii~--G~SaY~r~id~~~~re- 188 (413)
T COG0112 117 GLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVK-----PKLIIA--GGSAYSRPIDFKRFRE- 188 (413)
T ss_pred cccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHhC-----CCEEEE--CccccccccCHHHHHH-
Confidence 1223555665543 2212333 255666788 679999999999988873 777774 4444444455777777
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++-|. ++-+|.|+=++
T Consensus 189 -------------------Iad~VGA-------~L~~DmAHiaG 206 (413)
T COG0112 189 -------------------IADEVGA-------YLMVDMAHVAG 206 (413)
T ss_pred -------------------HHHHhCc-------eEEehHHHHHH
Confidence 9999999 99999995443
|
|
| >KOG2040|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0005 Score=81.45 Aligned_cols=319 Identities=16% Similarity=0.105 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcC-ChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQT-TASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTs-GGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
.+|-...-.||+++-|++.- .|++ +|..+-..+|.+-|.+... .| . ..+-+.+++.
T Consensus 581 ~~lf~~Le~~Lc~iTG~D~~------------s~QPNsGA~GEYaGL~~IRaY~~~------kg---e--~hRnvClIPv 637 (1001)
T KOG2040|consen 581 QQLFTELEKDLCEITGFDSF------------SLQPNSGAQGEYAGLRVIRAYLES------KG---E--GHRNVCLIPV 637 (1001)
T ss_pred HHHHHHHHHHhheeecccce------------eecCCCCcccchhhHHHHHHHHHh------cc---C--CcceeEEEee
Confidence 34555666789999999753 2222 2223344566666665432 12 1 1355677888
Q ss_pred CCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc-HHHhhhhcccccccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS-YCCLGTAMIVKGLGF 387 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp-L~eIa~~~~~~d~~~ 387 (943)
.+|-...-.+.+.+-+|+.|.++.+|.+|..+|+...++..++ -.++..|..+|. |.+.+ +.++.+
T Consensus 638 SAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~---Laa~MvTYPST~-GvfE~~i~d~cd--------- 704 (1001)
T KOG2040|consen 638 SAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDN---LAALMVTYPSTH-GVFEEGIDDICD--------- 704 (1001)
T ss_pred cccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhhh---hheeEEeccccc-ccccccHHHHHH---------
Confidence 8998877766665558999999999999999999988876543 456777888776 67765 888888
Q ss_pred ccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchh
Q psy11047 388 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467 (943)
Q Consensus 388 ~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r 467 (943)
+.++||- -+.+|||-=-+ .. | +|.+
T Consensus 705 -----------~iHehGG-------QVYlDGANMNA-qV--------G--------------------------lc~p-- 729 (1001)
T KOG2040|consen 705 -----------IIHEHGG-------QVYLDGANMNA-QV--------G--------------------------LCRP-- 729 (1001)
T ss_pred -----------HHHhcCC-------EEEecCCCccc-ee--------c--------------------------ccCC--
Confidence 9999998 79999984222 11 1 2322
Q ss_pred hhhcCCCCeeEEEEcCCCccCccCcchh-----hhhcccCccccccCC---CCcccccCccccCCCCCcc-h--H-HHHH
Q psy11047 468 LRIQGLGRAQNFTIVPSSLLRVKNSGAL-----HRTFNVEPLYLRHEN---SGLAIDYMHWQIPLSKRFR-A--L-KLWF 535 (943)
Q Consensus 468 ~~l~Gie~ADSItiDpHK~L~vr~~~~L-----~~af~~~p~YL~~~~---~g~~~d~~~~tie~SRrfr-A--L-klW~ 535 (943)
|--.+|---++.||.+.++.+.-= ...-+.-++||..-. .+...+-...+--.+-++. | | --|.
T Consensus 730 ----Gd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwa 805 (1001)
T KOG2040|consen 730 ----GDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWA 805 (1001)
T ss_pred ----ccccccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHH
Confidence 223678888899998874432110 000012234543211 0000000001111111221 2 2 3589
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHh
Q psy11047 536 VIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 615 (943)
Q Consensus 536 tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~ 615 (943)
.++.+|..|+...-.-.+ -.|.|.+..|.
T Consensus 806 YikmMG~~GL~~as~~Ai---------------------------------------------------LNaNYMakRLe 834 (1001)
T KOG2040|consen 806 YIKMMGSGGLKDASKIAI---------------------------------------------------LNANYMAKRLE 834 (1001)
T ss_pred HHHHhcccccchhhHHHh---------------------------------------------------hhhHHHHHHHh
Confidence 999999999887655532 23444444444
Q ss_pred CCCCeEEecCCCccEEE--EEec--C----CChHHHHHHHHHhccCcEEEeec-ccCCCcEEEEeecCCCCHHHHHHHHH
Q psy11047 616 GDPRFEIPAARHLGMVV--IRLL--G----ENILTEKLLKRLNSKGRLHCVPA-SLRIQGLGRAQNFTRTTNDDITRDWN 686 (943)
Q Consensus 616 ~~p~~eIl~~~~l~iV~--Fr~~--g----~n~l~~~Ll~~L~~~G~~~~s~t-~~~g~~~lR~v~~~~tt~edId~ll~ 686 (943)
. .++|+....-++|. |-+. + .+.-...+.+||..-|. | +|| +|.-.+.+=+=.--.-+.+++|++.+
T Consensus 835 ~--hYkil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgF-H-aPTmswPV~gtLMIEPTESE~k~ElDRfcd 910 (1001)
T KOG2040|consen 835 S--HYKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGF-H-APTMSWPVAGTLMIEPTESEDKAELDRFCD 910 (1001)
T ss_pred h--ccceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccC-C-CCccccccCCceEeccCccccHHHHHHHHH
Confidence 4 35565544444443 2221 1 11224678899998884 3 333 45555555552222335689999999
Q ss_pred HHHHHHHHHHHH
Q psy11047 687 EIRNTATEILAE 698 (943)
Q Consensus 687 ~I~~~~~~ll~~ 698 (943)
++..+-++|..-
T Consensus 911 AliSIreEI~~i 922 (1001)
T KOG2040|consen 911 ALISIREEIAQI 922 (1001)
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0059 Score=71.45 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=39.2
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
...+..++.++|.+ +.+. +..++|+..+..+|++||+++++.+.++...+
T Consensus 378 ~~~~~~~l~~~Gi~-~~~~---~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~ 427 (443)
T PRK08360 378 AAKVVWRAWELGLI-VTFF---SGNVLRIQPPLTIEKEVLDEGLDILEEAIEDV 427 (443)
T ss_pred HHHHHHHHHHCCeE-Eeec---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45777888888854 4321 24689999999999999999999999887665
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0014 Score=76.67 Aligned_cols=143 Identities=10% Similarity=0.060 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
...+-..+.+++.+.+|..... .....++|+|+|+++-..+++ +- .|| + .|+++.
T Consensus 97 ~~~LR~aiA~~l~~~~~~~~~v------~p~~Ivit~G~t~al~~l~~~-----l~-----~pG--------D-~Vlv~~ 151 (447)
T PLN02607 97 LKSFRQAMASFMEQIRGGKARF------DPDRIVLTAGATAANELLTFI-----LA-----DPG--------D-ALLVPT 151 (447)
T ss_pred hHHHHHHHHHHHHHhcCCCCCc------CHHHeEEcCChHHHHHHHHHH-----hC-----CCC--------C-EEEEcC
Confidence 3455566667777666531110 013688999999997655443 10 122 2 345555
Q ss_pred CCchHHHHHHH-HCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccc
Q psy11047 309 QAHSSVEKAGL-IGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIV 382 (943)
Q Consensus 309 ~aHySv~KAa~-LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~ 382 (943)
-.......... ..+.+++.|+++. .+.+|+++++++++...+.|..+.+++.+-..+-+|.+-+ ++++.+
T Consensus 152 P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~---- 227 (447)
T PLN02607 152 PYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILD---- 227 (447)
T ss_pred CCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHH----
Confidence 45555555443 3445788888763 4579999999999886666766777888888899998876 566666
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++|++ ++.+|-+|+.+
T Consensus 228 ----------------~~~~~~i-------~lI~DEiYa~~ 245 (447)
T PLN02607 228 ----------------FVVRKNI-------HLVSDEIYSGS 245 (447)
T ss_pred ----------------HHHHCCC-------EEEEecccccc
Confidence 8999999 99999999876
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.004 Score=72.97 Aligned_cols=138 Identities=11% Similarity=-0.055 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
.....+.+.|++++..+. ....|+.+|||||-.|+..||.+..+ .| ..-++.+...-
T Consensus 117 ~~~~~lAe~L~~~~p~~~----------~~v~f~~SGsEA~e~AlklAr~~t~~------~g-------r~~ii~~~~~y 173 (442)
T TIGR03372 117 PLRALLAKTLAALTPGKL----------KYSFFCNSGTESVEAALKLAKAYQSP------RG-------KFTFIAASGAF 173 (442)
T ss_pred HHHHHHHHHHHHhCCCCc----------CEEEEeCCchHHHHHHHHHHHHHHhh------cC-------CcEEEEECCCc
Confidence 334456666777653221 24689999999999999999975311 01 11233344444
Q ss_pred chHHHHHHHH-C-----------CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HH
Q psy11047 311 HSSVEKAGLI-G-----------LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YC 374 (943)
Q Consensus 311 HySv~KAa~L-G-----------~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~ 374 (943)
|=...-+..+ | ...+..+|.+ |.+++++.|+.....+..+.+|+.--.-...|.+-| ++
T Consensus 174 HG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~-----d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~ 248 (442)
T TIGR03372 174 HGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG-----DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLP 248 (442)
T ss_pred cCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC-----CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHH
Confidence 4332222222 1 1124455543 467888888654333333444444333334466655 88
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++.+ +|++||+ .+.+|-.+.|+
T Consensus 249 ~l~~--------------------lc~~~g~-------llI~DEV~tG~ 270 (442)
T TIGR03372 249 AVRA--------------------LCDEFGA-------LLILDEVQTGM 270 (442)
T ss_pred HHHH--------------------HHHHcCC-------EEEEeecccCC
Confidence 8888 9999999 89999998665
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0015 Score=75.73 Aligned_cols=160 Identities=9% Similarity=-0.054 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHH-hccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAI-NCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 205 ~silgd~L~~al-N~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
|..+.+.+..++ +.....|.......++=..+.+|+.+..|++-. ....++|+|++++...++. . +
T Consensus 50 p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~--------~~~I~it~G~~~al~~~~~-l----~ 116 (433)
T PRK06855 50 PDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQIT--------PDDIIFFNGLGDAIAKIYG-L----L 116 (433)
T ss_pred CHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCC--------HhHEEEcCcHHHHHHHHHH-h----c
Confidence 344445554443 222223333334455666677788777676432 1368899999999765542 1 1
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH-CCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEE
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI-GLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFS 360 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L-G~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVa 360 (943)
.+| +. |++.+-+......+..+ .+.+++.+++++ .+.+|+++|++++.... .+.+++.
T Consensus 117 ------~~G--------d~-Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~----~~~~i~l 177 (433)
T PRK06855 117 ------RRE--------AR-VIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNP----SIAGILL 177 (433)
T ss_pred ------CCC--------Ce-EEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCC----CceEEEE
Confidence 122 22 44444444433333332 234677888763 35799999999986421 1345555
Q ss_pred ecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 361 GLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 361 TaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+...+-||.+-+ +++|.+ +|++||+ |+-.|.+|+..
T Consensus 178 ~~P~NPTG~~~s~~~~~~l~~--------------------~a~~~~~-------~II~De~Y~~l 216 (433)
T PRK06855 178 INPDNPTGAVYPKEILREIVD--------------------IAREYDL-------FIICDEIYNNI 216 (433)
T ss_pred ECCCCCCCcCCCHHHHHHHHH--------------------HHHHcCC-------EEEEecccccc
Confidence 567888998866 555666 8999999 99999999865
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0066 Score=70.94 Aligned_cols=51 Identities=16% Similarity=0.114 Sum_probs=39.3
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
....+.+.+.++|.+ +.+ .+...+|+.....+|++||+++++.++++..++
T Consensus 390 ~~~~~~~~~~~~Gil-~~~---~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 390 LRDKVLYEAFKRGLL-LLG---AGKSAIRIIPPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred HHHHHHHHHHhCCcE-Eec---CCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 456677788888864 433 244689998888899999999999999887654
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0059 Score=70.62 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCCCeEEecCCCcc-EEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHH
Q psy11047 605 RLAQKFEALVLGDPRFEIPAARHLG-MVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 605 ~LA~~l~~~L~~~p~~eIl~~~~l~-iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ 683 (943)
.+.+.+.++....|.+.. ..+..+ ++.+.+.. ......+.+++.++|.+ +.+.. ....++|+..+...|++|++.
T Consensus 326 ~l~~~l~~l~~~~~~~~~-~vrg~Gl~~~l~l~~-~~~~~~~~~~~~~~Gv~-v~~~~-~~~~~lr~~p~l~~t~~~i~~ 401 (412)
T TIGR02407 326 IIQERLDRIVAEYPELIK-QVRGRGLMQGIECGD-GDLAGKIAKAAFENGLI-IETSG-PNDEVIKLLPPLTIDEETLQQ 401 (412)
T ss_pred HHHHHHHHHHhhCCCceE-eeecceeEEEEEecC-hHHHHHHHHHHHHCCCE-EeccC-CCCCEEEEECCCCCCHHHHHH
Confidence 344455554445554322 222233 34556543 23456788888888964 44321 123589999999999999999
Q ss_pred HHHHHHHHHH
Q psy11047 684 DWNEIRNTAT 693 (943)
Q Consensus 684 ll~~I~~~~~ 693 (943)
+++.+++...
T Consensus 402 ~~~~l~~~l~ 411 (412)
T TIGR02407 402 GLDILEQAVE 411 (412)
T ss_pred HHHHHHHHHh
Confidence 9999988753
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0071 Score=70.00 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=40.8
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
....+.+.+.++|.+. .+ .+...+|++.+...+++||+.+++.+++...++.
T Consensus 354 ~a~~i~~~l~~~Gvlv-~~---~g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~~ 405 (408)
T PRK04612 354 QAGAILDLAAEHGLLL-LQ---AGPDVLRFVPALNLTDAELADGLARLRLALADYV 405 (408)
T ss_pred HHHHHHHHHHHCCeEE-ee---CCCCEEEEcCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 3567788888888654 33 2557899999999999999999999988876643
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.01 Score=68.72 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=38.9
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
....+..++.++|.++.... ....++|+..+...++++|+..++.|.++...
T Consensus 372 ~~~~l~~~~~~~Gv~~~~~~--~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 372 LTAQIVARARDKGLILLSCG--PYYNVLRILVPLTIEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred HHHHHHHHHHhCCCEEecCC--CCCCEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence 35778888888897654321 11368999888888999999999998887653
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0053 Score=68.82 Aligned_cols=126 Identities=8% Similarity=-0.078 Sum_probs=79.9
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++.+++.++++.+ ..++|+|++++...++.+. . .+| + .|++.+-+....
T Consensus 69 ~lr~~ia~~~~~~~~----------~I~it~G~~~al~~~~~~~----~------~~g--------d-~V~v~~P~y~~~ 119 (357)
T PRK14809 69 DLTAALADRWDVSPE----------QVWLANGGDGALDYLARAM----L------DPG--------D-TVLVPDPGFAYY 119 (357)
T ss_pred HHHHHHHHHhCCCcc----------eEEECCCHHHHHHHHHHHh----c------CCC--------C-EEEEeCCChHHH
Confidence 455666777777653 6789999999976554431 1 122 2 244444443333
Q ss_pred HHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKL 392 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L 392 (943)
..++.+.+..++.++++ +...++.+++++.+. + +.+++.+...+-||.+-+.+++.+
T Consensus 120 ~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~-----~--~k~i~l~~p~NPTG~~~s~~~~~~-------------- 178 (357)
T PRK14809 120 GMSARYHHGEVREYPVSKADDFEQTADTVLDAYD-----G--ERIVYLTSPHNPTGSEIPLDEVEA-------------- 178 (357)
T ss_pred HHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc-----C--CcEEEEeCCCCCCCcCCCHHHHHH--------------
Confidence 34444434467777774 345677777766542 1 345666678899999988777776
Q ss_pred cCchHHHHHHc--CCCCCccchhhhHHhhhcCC
Q psy11047 393 QTNFPNFILSY--FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 393 ~RrfR~iar~~--Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++.. +. |+.+|.+|+.+
T Consensus 179 ------l~~~~~~~~-------~iI~De~y~~~ 198 (357)
T PRK14809 179 ------LAERTDEET-------LVVVDEAYGEF 198 (357)
T ss_pred ------HHHhCccCc-------EEEEechhhhc
Confidence 55543 67 89999999865
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0097 Score=68.84 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhCCCCeEEecCCCccEEEEEecC------CChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCH
Q psy11047 605 RLAQKFEALVLGDPRFEIPAARHLGMVVIRLLG------ENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTN 678 (943)
Q Consensus 605 ~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g------~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~ 678 (943)
++.+.+.+.....|.+.-+. ..-.+..+.+.+ .......+.+.+.++|.+. .+...- ..++|+......++
T Consensus 328 ~l~~~L~~l~~~~~~~~~vr-g~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i-~p~~~f-~~~lRl~p~l~~~~ 404 (420)
T TIGR00700 328 LVTDRLTTLKAVDPRIGDVR-GLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLL-LTCGMF-GNIIRFLPPLTIGD 404 (420)
T ss_pred HHHHHHHHHHhhCCCEEEee-ccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEE-eccCCC-CCEEEEECCCCcCH
Confidence 34555555555555443332 223344554422 1234567777888888654 432211 25899977666789
Q ss_pred HHHHHHHHHHHHHH
Q psy11047 679 DDITRDWNEIRNTA 692 (943)
Q Consensus 679 edId~ll~~I~~~~ 692 (943)
++|+++++.|.++.
T Consensus 405 ~~l~~~~~~l~~~l 418 (420)
T TIGR00700 405 ELLSEGLDILCAIL 418 (420)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887764
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0022 Score=74.64 Aligned_cols=131 Identities=17% Similarity=0.066 Sum_probs=86.2
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|....||.. +|++.|.+ ..++++||+.|+..++.+. + .+| -.|
T Consensus 81 ~~Pt~~~Le~~----lA~leg~~------------~~iv~~sG~~Ai~~~l~al----~------~~G---------d~V 125 (427)
T PRK07049 81 NHPNSEIVEDR----LAVYEGAE------------SAALFSSGMSAIATTLLAF----V------RPG---------DVI 125 (427)
T ss_pred CCcCHHHHHHH----HHHHhCCC------------cEEEEccHHHHHHHHHHHH----h------CCC---------CEE
Confidence 45777778774 46777643 4689999999976665432 1 122 235
Q ss_pred EecCCCchHHHHHH-----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 305 YCSDQAHSSVEKAG-----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 305 ~~S~~aHySv~KAa-----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
++++.........+ .+| .+++.++. + .|.++++++|.+...+. .+.+|...-.++-+|.+-|++++.+
T Consensus 126 v~~~p~Y~~~~~~~~~~l~~~G-i~~v~~~~---~-~d~~~l~~~l~~~~~~~-~tklv~lesP~NPtg~v~d~~~l~~- 198 (427)
T PRK07049 126 LHSQPLYGGTETLLAKTFRNFG-VGAVGFAD---G-LSEAAIGAAAEAAAAKG-RVSLILIETPANPTNSLVDVAAVRR- 198 (427)
T ss_pred EEcCCCcccHHHHHHHHHHhcC-cEEEEEeC---C-CCHHHHHHHHHhhccCC-CceEEEEECCCCCCCcccCHHHHHH-
Confidence 55665555554432 123 34444441 1 57888888886543222 3667777788889999999999988
Q ss_pred ccccccccccccccCchHHHHHH------cCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILS------YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~------~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++. +++ ++.+|.+|.+.
T Consensus 199 -------------------la~~~~~~~~~~~-------~vvvDety~~~ 222 (427)
T PRK07049 199 -------------------VADAIEARQGHRP-------IIACDNTLLGP 222 (427)
T ss_pred -------------------HHHHhhhcccCCC-------EEEEECCcccc
Confidence 7776 788 89999998765
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.016 Score=67.63 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=42.9
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAEL 699 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~ 699 (943)
+...+...+.++|.+ +.+... ...++|+.....+|++||+.+++.+++...++++++
T Consensus 384 ~~~~~~~~~~~~Gvl-~~~~~~-~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~~~~ 440 (442)
T TIGR00709 384 LAAAIQGACFENGLL-LETGGR-EGEVFRLLCPITIDQEECEEGISRFKQAVEEALAEV 440 (442)
T ss_pred HHHHHHHHHHHCCeE-EeecCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777788854 443222 236899999899999999999999999988876664
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.021 Score=66.93 Aligned_cols=54 Identities=7% Similarity=0.020 Sum_probs=39.6
Q ss_pred HHHHHHHHHhccCcEEEeec---ccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPA---SLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t---~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
....+.+.+.++|.+ +.+. ...+..++|+.....+|++||+++++.+.++..++
T Consensus 394 ~a~~i~~~l~~~Gv~-~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 394 KVASVVAACKEKGLI-IGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred HHHHHHHHHHHCCcE-EeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 456777888889964 3332 11234689998888899999999999998876543
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.012 Score=68.78 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=40.8
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
....+..++.++|.+ +.+. +..++|+......|++||+.+++.+.++..++.+
T Consensus 380 ~~~~~~~~~~~~Gv~-~~~~---~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~ 432 (445)
T PRK08593 380 AALKICNYCFEHGVV-IIAV---AGNVLRFQPPLVITYEQLDTALNTIEQAFTALEA 432 (445)
T ss_pred HHHHHHHHHHHCCeE-Eecc---CCCEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 356777888888864 3321 2358999999999999999999999988876543
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.011 Score=67.22 Aligned_cols=116 Identities=7% Similarity=-0.085 Sum_probs=76.1
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH-HHCCccEEEEecC-CCCCcC
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG-LIGLVNMRYIESD-DKLSLR 337 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp~D-~~grmD 337 (943)
..++|+|++++..+.+.+. . .|| -.|++.+-++.....++ .+.+.+++.+|.+ +++.+|
T Consensus 71 ~I~it~G~~~al~~~~~~l----~------~~g---------d~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d 131 (388)
T PRK08637 71 LPIVTNALTHGLSLVADLF----V------DQG---------DTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFD 131 (388)
T ss_pred eeeEccchHHHHHHHHHHh----c------CCC---------CEEEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCC
Confidence 4689999999986554431 1 122 23555555665566554 3444578888873 556799
Q ss_pred HHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHH-----cCCCCCc
Q psy11047 338 GDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILS-----YFPKFQS 409 (943)
Q Consensus 338 ~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~-----~Gl~~~~ 409 (943)
++++++.++....+ ...+++.+--.+-||.+-+ +++|.+ +|++ |++
T Consensus 132 ~~~l~~~~~~~~~~--~~~~~~~~~P~NPTG~~~s~~~~~~l~~--------------------~~~~~~~~~~~~---- 185 (388)
T PRK08637 132 TDALKEALQAAYNK--GKVIVILNFPNNPTGYTPTEKEATAIVE--------------------AIKELADAGTKV---- 185 (388)
T ss_pred HHHHHHHHHhhccC--CCEEEEEeCCCCCCCCCCCHHHHHHHHH--------------------HHHHHHhcCCcE----
Confidence 99999988732111 1344555556788887754 566666 6664 899
Q ss_pred cchhhhHHhhhcCC
Q psy11047 410 VRLAQKFEALVLGD 423 (943)
Q Consensus 410 l~lwLHVDAA~GG~ 423 (943)
|+-.|-+|..+
T Consensus 186 ---~iI~De~Y~~l 196 (388)
T PRK08637 186 ---VAVVDDAYFGL 196 (388)
T ss_pred ---EEEecccchhc
Confidence 99999999866
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.011 Score=69.50 Aligned_cols=52 Identities=17% Similarity=0.051 Sum_probs=38.9
Q ss_pred HHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 644 KLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 644 ~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
.+.+.+.++|. ++.+. ..+..++|+.....+|++||+.+++.+.++..++.+
T Consensus 407 ~~~~~l~~~Gi-~~~~~-~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06541 407 FLSPALFEAGL-YCRAD-DRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEAWA 458 (460)
T ss_pred HHHHHHHhCCe-EEEec-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45677778885 44432 124568999888889999999999999998876544
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.039 Score=64.31 Aligned_cols=54 Identities=9% Similarity=0.099 Sum_probs=39.9
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
+...+.+.+.++|.+. ..+... ..++|+.....+|+++|+++++.|++...++.
T Consensus 370 ~~~~~~~~~~~~Gvl~-~~~g~~-~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 370 FANRVRLKALEKGLIL-LTCGVH-GNVIRFLAPITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred HHHHHHHHHHHCCeEE-eecCCC-CCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 3456777888888654 322111 36899988888999999999999998876653
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0052 Score=70.73 Aligned_cols=128 Identities=13% Similarity=-0.020 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
.++.+.|++++...+ ..+||.||||||..|+.+||.+. | ++-+|.....-|-.
T Consensus 91 ~~lae~l~~~~~~~~-----------~v~~~~sGseA~e~Alk~ar~~~---------g-------r~~ii~~~~~yhG~ 143 (423)
T TIGR00713 91 ILLAKEIISRVPSVE-----------MVRFVNSGTEATMSAVRLARGYT---------G-------RDKIIKFEGCYHGH 143 (423)
T ss_pred HHHHHHHHHhCCccc-----------EEEEeCCHHHHHHHHHHHHHHhh---------C-------CCEEEEEcCCCCCC
Confidence 345666667664322 47899999999999999998642 1 12233334444432
Q ss_pred HHHHHHH-CC------------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc--
Q psy11047 314 VEKAGLI-GL------------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS-- 372 (943)
Q Consensus 314 v~KAa~L-G~------------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp-- 372 (943)
..-+..+ +. ..+..+|- -|+++|++.+.... ..+.+|+..---.++|.+-|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~---~~~aavi~ep~~~~~G~~~~~~ 215 (423)
T TIGR00713 144 HDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPY-----NDLEALEEVFEEYG---EEIAGVIVEPVAGNMGVVPPKP 215 (423)
T ss_pred hhhhhccccCcccccCCCCCCCCCcccccceEEeCC-----CCHHHHHHHHHHcC---CcEEEEEEeCCCCCCCCcCCCH
Confidence 2222111 00 01222221 17899999887431 12444554322223677755
Q ss_pred --HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 --YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 --L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++|.+ +|++||+ ++.+|-+|.|+
T Consensus 216 ~~l~~l~~--------------------l~~~~~~-------llI~DEv~~g~ 241 (423)
T TIGR00713 216 EFLAGLRA--------------------LTEEYGS-------LLIFDEVMTGF 241 (423)
T ss_pred HHHHHHHH--------------------HHHHhCC-------EEEEEcccccc
Confidence 677777 9999999 99999999776
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.015 Score=66.70 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=37.1
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
...+..++.++|.+. .+. ....++|+......++++|+.+++.|.++..+
T Consensus 331 ~~~~~~~~~~~Gv~i-~~~--~~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~ 380 (382)
T PLN00144 331 AGPLVDACRDSGLLV-LTA--GKGDVVRLVPPLVISEAELEQAVEILADCLPA 380 (382)
T ss_pred cHHHHHHHHHCCeEE-eec--CCCCEEEEeCCCccCHHHHHHHHHHHHHHHHh
Confidence 357888888889654 332 11368999877767899999999999887654
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.022 Score=67.09 Aligned_cols=55 Identities=9% Similarity=-0.004 Sum_probs=41.7
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAEL 699 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~ 699 (943)
...+.+.+.++|.+. .+. .+..++|+.....+|++||+++++.+.+...++.+++
T Consensus 405 ~~~i~~~~~~~Gvl~-~~~--~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~~~~~ 459 (461)
T PRK07482 405 GPQVSAAALERGVIA-RAM--PHGDILGFAPPLVLTRAEADEIVAIAKDAVDEVLGRL 459 (461)
T ss_pred HHHHHHHHHHCCcEE-ecC--CCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 457778888899643 221 1235899988899999999999999999988775553
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0086 Score=67.33 Aligned_cols=132 Identities=13% Similarity=0.042 Sum_probs=85.3
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCC-ccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLP-EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p-~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
.|.......++...+.+|+.+..|.+ -. ....++|+|++++...++.+.. + .+|
T Consensus 57 ~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~--------~~~I~it~G~~~~i~~~~~~l~---~------~~g-------- 111 (364)
T PRK07865 57 GYPTTAGTPELREAIVGWLARRRGVTGLD--------PAAVLPVIGSKELVAWLPTLLG---L------GPG-------- 111 (364)
T ss_pred CCCCccCCHHHHHHHHHHHHHHcCCCCCC--------cccEEEccChHHHHHHHHHHHc---C------CCC--------
Confidence 34433445677788888998887764 22 1368999999999765433210 0 122
Q ss_pred ceEEEecCCCchHHHHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHh
Q psy11047 301 RLVAYCSDQAHSSVEKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCL 376 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eI 376 (943)
-.|++.+-+|.+...++. +|. ++..++ +.+++.. ..+.+|+.+-..+-+|.+-+ +++|
T Consensus 112 -d~Vl~~~p~y~~~~~~~~~~g~-~~~~~~-------~~~~l~~---------~~~~~v~~~~p~NPtG~~~~~~~~~~i 173 (364)
T PRK07865 112 -DVVVIPELAYPTYEVGARLAGA-TVVRAD-------SLTELGP---------QRPALIWLNSPSNPTGRVLGVDHLRKV 173 (364)
T ss_pred -CEEEECCCCcccHHHHHHhcCC-EEEecC-------ChhhCCc---------ccceEEEEcCCCCCCCccCCHHHHHHH
Confidence 246677778888877775 454 555443 1222221 12556666667788897755 5677
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+ +|+++|+ |+.+|.+|+..
T Consensus 174 ~~--------------------~a~~~~~-------~ii~De~y~~~ 193 (364)
T PRK07865 174 VA--------------------WARERGA-------VVASDECYLEL 193 (364)
T ss_pred HH--------------------HHHHcCC-------EEEEecchhhh
Confidence 77 8999999 99999999865
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.033 Score=65.31 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=41.0
Q ss_pred HHHHHHHHHhccCcEEEeeccc----CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASL----RIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~----~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
....+...+.++|.+. .+... ....++|+.....+|++||+.+++.+.++..++.+
T Consensus 381 ~~~~~~~~~~~~Gvl~-~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 440 (447)
T PRK06917 381 VASELISVAAKNGLLL-YPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQ 440 (447)
T ss_pred HHHHHHHHHHhCCcEE-EecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888889654 33211 12358998877889999999999999998877633
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.013 Score=75.15 Aligned_cols=134 Identities=12% Similarity=0.045 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 232 LEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 232 LE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
+-..+.+|+++..|++... ....++|+|++++...++.+- . .|| + .|++..-+.
T Consensus 735 lr~aLa~~la~~~Gv~~d~-------~e~IIvt~Gs~elL~lll~aL----l------~pG--------D-~VLVp~PtY 788 (1082)
T PLN02672 735 PRPSILQFIKSNYGFPTDS-------CTEFVYGDTSLALFNKLVLCC----V------QEG--------G-TLCFPAGSN 788 (1082)
T ss_pred HHHHHHHHHHHHhCcCCCC-------CCEEEEeCCHHHHHHHHHHHH----c------CCC--------C-EEEEeCCCh
Confidence 4567889999999997531 124666666666554443321 1 122 2 355555566
Q ss_pred hHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCC-Cccccccc---HHHhhhhcccccc
Q psy11047 312 SSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLAL-PAFLVVDS---YCCLGTAMIVKGL 385 (943)
Q Consensus 312 ySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGT-T~tGaIDp---L~eIa~~~~~~d~ 385 (943)
.....++.+-+.+++.||+++ .+.+|.++|++++.... ..+++.+.-+ +-||.+-+ +++|.+
T Consensus 789 ~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~-----~~~I~L~nPnhNPTG~v~S~eeLe~Lle------- 856 (1082)
T PLN02672 789 GTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVK-----KPWVYISGPTINPTGLLYSNSEIEEILS------- 856 (1082)
T ss_pred HHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCC-----CCEEEEECcCCCCcCccCCHHHHHHHHH-------
Confidence 666666655455888999863 57889999999985421 1234444444 88998855 566666
Q ss_pred ccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 386 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 386 ~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+-+|-+|+..
T Consensus 857 -------------la~k~di-------~VIsDEaYsdL 874 (1082)
T PLN02672 857 -------------VCAKYGA-------RVIIDTSFSGL 874 (1082)
T ss_pred -------------HHHHcCC-------EEEEeCCCCcc
Confidence 8999999 99999999865
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.022 Score=65.28 Aligned_cols=185 Identities=9% Similarity=-0.047 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCC--hHHHHHHHHHHHHhc-----cCccccCChhHHHHHHHHHHHHHH
Q psy11047 170 KWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNS--YPSLLGDMLSDAINC-----LGFTWASSPACTELEIITMNWLGK 242 (943)
Q Consensus 170 ~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s--~~silgd~L~~alN~-----n~~~~~~SPaateLE~~Vi~wLa~ 242 (943)
.++++.+.+.+.- ..|..+....+-.+.+. ++..+.+.+..+++. ....|...+...++-..+.+|+.+
T Consensus 16 ~~~~~~~~~~~~~----~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~ 91 (409)
T PRK07590 16 LFPEIARRVNAFR----EANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQ 91 (409)
T ss_pred hHHHHHHHHHHHh----hhcCCCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHH
Confidence 3566666555432 22334444333222221 234445555555543 223344445566777777788777
Q ss_pred HhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HC
Q psy11047 243 MIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IG 321 (943)
Q Consensus 243 LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG 321 (943)
..|++-+ ....++|+|++++... +.. ++ .+| + .|++.+=+......++. .|
T Consensus 92 ~~g~~~~--------~~~I~it~Ga~~al~~-l~~----~~------~~g--------d-~V~v~~P~Y~~~~~~~~~~g 143 (409)
T PRK07590 92 ARGCDIS--------ADEIFISDGAKCDTGN-ILD----IF------GPD--------N-TIAVTDPVYPVYVDTNVMAG 143 (409)
T ss_pred hcCCcCC--------hhhEEECCCHHHHHHH-HHH----hc------CCC--------C-EEEEeCCCCcchHHHHHHcC
Confidence 6666432 1367899999998653 221 11 122 1 24444545555555554 45
Q ss_pred Cc----------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccc
Q psy11047 322 LV----------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFY 388 (943)
Q Consensus 322 ~~----------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~ 388 (943)
.. +++.++++.++.+..+. . . ..+.+++.+-..+-||.+-+ +.+|.+
T Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~d~-~----~-----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~---------- 203 (409)
T PRK07590 144 RTGEANEDGRYSGIVYLPCTAENNFVPEL-P----E-----EKVDIIYLCFPNNPTGTVLTKEQLKAWVD---------- 203 (409)
T ss_pred CcccccccccccceeEeecccccCCcccC-c----c-----cCceEEEEeCCCCCcCCcCCHHHHHHHHH----------
Confidence 42 37888886443333221 1 0 12555665667788898866 555666
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++|++ |+..|.+|+.+
T Consensus 204 ----------~a~~~~~-------~iI~De~Y~~~ 221 (409)
T PRK07590 204 ----------YAKENGS-------LILFDAAYEAF 221 (409)
T ss_pred ----------HHHHcCe-------EEEEEccchhh
Confidence 8999999 99999999865
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.015 Score=66.70 Aligned_cols=162 Identities=11% Similarity=-0.041 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhccC-----ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINCLG-----FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGR 279 (943)
Q Consensus 205 ~silgd~L~~alN~n~-----~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR 279 (943)
...+.+.+...++... ..|.......++-..+.+|+.+..|++-. ....++|+|++++...++.+-
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~--------~~~I~it~Ga~~al~~~~~~l- 117 (416)
T PRK09440 47 EDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNIS--------PQNIALTNGSQSAFFYLFNLF- 117 (416)
T ss_pred HHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCC--------hhhEEEccChHHHHHHHHHHH-
Confidence 3455566655554321 12322223456667778888877776422 136889999999876554421
Q ss_pred HHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HC---CccEEEEecCC---CCCcCHHHHHHHHHHhhccC
Q psy11047 280 TEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IG---LVNMRYIESDD---KLSLRGDKLIEAIERDKKKH 352 (943)
Q Consensus 280 ~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG---~~~v~~Vp~D~---~grmD~daLe~aI~~d~~kG 352 (943)
.. ++- .+ .++.+++..+-+......++. .| ......++++. ...+|+++|+ +..
T Consensus 118 ---~~------~~~--~~-~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~----- 178 (416)
T PRK09440 118 ---AG------RRA--DG-SLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDE----- 178 (416)
T ss_pred ---hc------ccc--CC-CCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCC-----
Confidence 11 100 00 012233311222222233332 11 11222333333 3579999887 211
Q ss_pred CCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 353 LIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 353 ~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
.+.+++.+-..+-||.+-+ +++|.+ +|++|++ |+.+|.+|+-
T Consensus 179 -~~~~i~l~~P~NPTG~~~s~~~~~~l~~--------------------~a~~~~~-------~iI~De~Y~~ 223 (416)
T PRK09440 179 -DTGAICVSRPTNPTGNVLTDEELEKLDA--------------------LARQHNI-------PLLIDNAYGP 223 (416)
T ss_pred -CceEEEEecCCCCCCccCCHHHHHHHHH--------------------HHHHcCC-------cEEEeCCccc
Confidence 2456666677789998866 666677 8999999 9999999963
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.018 Score=67.25 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=38.2
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+...+.+++.++|.+ +.+..-. ..++|+.....+|+++|+++++.|++..++
T Consensus 391 ~~~~l~~~~~~~Gv~-~~~~~~~-~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 391 LTKALAAAAHAAGVI-VLTCGTY-GNVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred HHHHHHHHHHHCCeE-EeccCCC-CCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 456777788888864 4432111 258999888889999999999999887643
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.012 Score=65.88 Aligned_cols=102 Identities=7% Similarity=-0.149 Sum_probs=74.2
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHH
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGD 339 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~d 339 (943)
..++|+|++++...++.+. . .|++.+-++.....++.+.+.+++.+|.++++.++..
T Consensus 78 ~i~it~Ga~~~i~~~~~~~---------------------d--~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 134 (335)
T PRK14808 78 NVSVGNGADEIIYVMMLMF---------------------D--RSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEV 134 (335)
T ss_pred eEEEcCCHHHHHHHHHHHh---------------------C--cEEECCCCHHHHHHHHHHcCCeEEEecCCCcCCCChh
Confidence 6889999999987665431 0 1444555666677777654558899999887776543
Q ss_pred HHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhh
Q psy11047 340 KLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL 419 (943)
Q Consensus 340 aLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA 419 (943)
. +. .+.+++.+...+-||.+-+.+++.+ ++ ++++ |+.+|-+
T Consensus 135 ~----~~-------~~~~i~i~nP~NPTG~~~s~~~l~~--------------------l~-~~~~-------~ii~DE~ 175 (335)
T PRK14808 135 N----VG-------EGDVVFIPNPNNPTGHVFEREEIER--------------------IL-KTGA-------FVALDEA 175 (335)
T ss_pred H----cc-------CCCEEEEeCCCCCCCCCcCHHHHHH--------------------HH-hcCC-------EEEEECc
Confidence 2 11 1356777888999999999999888 77 5788 9999999
Q ss_pred hcCC
Q psy11047 420 VLGD 423 (943)
Q Consensus 420 ~GG~ 423 (943)
|.-+
T Consensus 176 Y~~f 179 (335)
T PRK14808 176 YYEF 179 (335)
T ss_pred hhhh
Confidence 9754
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0012 Score=75.69 Aligned_cols=307 Identities=13% Similarity=0.040 Sum_probs=166.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHH-HHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASES-TLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeA-NL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
.++..+-+++|+++. ....+++.+|-- ..++|.+.|.+ |. .+. |+.|...|+|
T Consensus 60 ~l~~d~~~~~G~~~~---------~~~~~vP~atgm~l~l~l~~l~~r---------~~-------a~~-Viw~ridqkS 113 (389)
T PF05889_consen 60 SLVLDALRLAGLRSV---------KSCFVVPMATGMSLTLCLLALRMR---------PK-------AKY-VIWPRIDQKS 113 (389)
T ss_dssp HHHHHHHHHTTHTTH---------CEEEEESS-HHHHHHHHHHHHHHH---------CT---------E-EEEEEEETHH
T ss_pred HHHHHHHHHcCCccc---------cceEEEecccccHHHHHHHHHhcc---------cC-------Cce-EEEeeccccc
Confidence 344455567899754 245667776644 55566655511 21 233 5558899999
Q ss_pred HHHHHHHCCccEEEEec---CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc-ccHHHhhhhcccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIES---DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV-DSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~---D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI-DpL~eIa~~~~~~d~~~~~ 389 (943)
-.||+...+-+++.||. .+.-..|.+++++.|++. |..+.+++.|.-+-..+-. |++.+|++
T Consensus 114 c~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~---G~~~iLcvltttscfapr~~D~i~~Iak----------- 179 (389)
T PF05889_consen 114 CFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEEL---GADNILCVLTTTSCFAPRLPDDIEEIAK----------- 179 (389)
T ss_dssp HHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHH---CGGGEEEEEEESSTTTTB----HHHHHH-----------
T ss_pred hHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHh---CCCCeEEEEEecCccCCCCCccHHHHHH-----------
Confidence 99999643336666663 244566888889888654 4456777777666666655 66999999
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhh
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR 469 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~ 469 (943)
+|++||+ ..-|-+|||--... --..+++....|++... ...
T Consensus 180 ---------iC~~~~I-------PhlvNnAYgvQ~~~---------------------~~~~i~~a~~~GRvda~--vqS 220 (389)
T PF05889_consen 180 ---------ICKEYDI-------PHLVNNAYGVQSSK---------------------CMHLIQQAWRVGRVDAF--VQS 220 (389)
T ss_dssp ---------HHHHHT---------EEEEGTTTTT-HH---------------------HHHHHHHHHHHSTCSEE--EEE
T ss_pred ---------HHHHcCC-------ceEEccchhhhHHH---------------------HHHHHHHHHhcCCccee--eee
Confidence 9999999 89999999863100 00112222222333211 000
Q ss_pred hcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCc--chHHHHHHHHHHHHHHHHH
Q psy11047 470 IQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF--RALKLWFVIRNFGIKGLQK 547 (943)
Q Consensus 470 l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf--rALklW~tLr~~G~~Gl~~ 547 (943)
-.+|.++=.+||-..-.++..+... .-.|= +|-+ ..+-+..++-.+|..||+.
T Consensus 221 ----~dkNF~VPvGgai~As~~~~~i~~v---s~~Yp------------------GRas~sp~ld~~itLl~LG~~g~~~ 275 (389)
T PF05889_consen 221 ----TDKNFMVPVGGAIMASFDPSGILAV---SKEYP------------------GRASASPSLDLFITLLSLGCTGYGA 275 (389)
T ss_dssp ----HHHHHCEESSHEEEEESSHHHHHHH---HHTSH------------------SHBTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cCCCEEecCCCcEEEecCHHHHHHH---HHHhh------------------hhhhcccchHHHHHHHHHhhhHHHH
Confidence 1346666677777665554433211 11121 1222 2355677999999999999
Q ss_pred HHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCC
Q psy11047 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 627 (943)
Q Consensus 548 ~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~ 627 (943)
.+...++. |.|+ .+.-++|++.+. -.++..|+
T Consensus 276 ll~~r~~~---------------------------------------f~~l-----~erl~~~aee~~----e~ll~~p~ 307 (389)
T PF05889_consen 276 LLKERKAS---------------------------------------FPYL-----KERLKKWAEEVG----ERLLETPR 307 (389)
T ss_dssp HHHHHHHH---------------------------------------HHHH-----HHHHHHHHHHTT----EEBSSSTT
T ss_pred HHHHHHHH---------------------------------------HHHH-----HHHHHHHHHHhh----hhhcCCCC
Confidence 99985431 1111 122233444332 23333333
Q ss_pred -ccEEEEEecCCCh----HHHHHHHHHhccCc---EEEeec------ccCC--CcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 628 -LGMVVIRLLGENI----LTEKLLKRLNSKGR---LHCVPA------SLRI--QGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 628 -l~iV~Fr~~g~n~----l~~~Ll~~L~~~G~---~~~s~t------~~~g--~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
.-.+.|.+.+... -...|-..|..+|. -.+++. +... ..++-+.+..-++++||+.+++.++++
T Consensus 308 N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~ 387 (389)
T PF05889_consen 308 NHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKI 387 (389)
T ss_dssp -SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHH
T ss_pred CCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3335566654321 12355555665542 212211 0111 246777788899999999999999887
Q ss_pred HH
Q psy11047 692 AT 693 (943)
Q Consensus 692 ~~ 693 (943)
.+
T Consensus 388 i~ 389 (389)
T PF05889_consen 388 IK 389 (389)
T ss_dssp HH
T ss_pred hC
Confidence 53
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.032 Score=65.71 Aligned_cols=50 Identities=10% Similarity=-0.027 Sum_probs=35.3
Q ss_pred HHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 644 KLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 644 ~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
.+.+.+.++|.+.. +. + ..+|+.....+|++||+++++.+.+...++..+
T Consensus 407 ~~~~~~~~~Gll~~-~~---~-~~~~l~Ppl~it~~eid~~~~~l~~al~~~~~~ 456 (460)
T PRK12403 407 RCRTIGFEEGVIIR-ST---L-GRMIMAPALVAGRAEIDELVDKTRIAVDRTARE 456 (460)
T ss_pred HHHHHHHhCCEEEE-ec---C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677886543 21 2 357777767789999999999999988776544
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.044 Score=64.38 Aligned_cols=49 Identities=8% Similarity=0.005 Sum_probs=37.5
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
...+.+.+.++|.+ +.+ . ..++|+.....+|++||+++++.++++...+
T Consensus 398 ~~~~~~~l~~~Gvl-~~~---~-~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~ 446 (451)
T PRK06062 398 MAAVKAACKERGLL-PFV---N-GNRIHVVPPCTVTEDEVREGLAILDAALAVA 446 (451)
T ss_pred HHHHHHHHHHCCcE-Eee---c-CCEEEEECCccCCHHHHHHHHHHHHHHHHHh
Confidence 45777888888965 332 1 2479998777899999999999998887653
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.014 Score=65.51 Aligned_cols=128 Identities=16% Similarity=0.037 Sum_probs=83.3
Q ss_pred ChhHHHHHHHHHHHHHHHhCCC-ccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLP-EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p-~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.....++...+.+|+.+..|.+ -. ....++|+|++++...++.+.. . .+| -.|
T Consensus 55 ~~G~~~lr~~ia~~~~~~~~~~~~~--------~~~I~it~G~~~~i~~~~~~l~---~------~~g---------d~V 108 (357)
T TIGR03539 55 TWGTPELREAIVDWLERRRGVPGLD--------PTAVLPVIGTKELVAWLPTLLG---L------GPG---------DTV 108 (357)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCC--------cCeEEEccChHHHHHHHHHHHc---C------CCC---------CEE
Confidence 3345678888889998887764 22 1367899999998655433210 0 122 236
Q ss_pred EecCCCchHHHHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~ 380 (943)
++.+-++.+...++. +|. +++.+ + +.+++. .. .+.+|+.+..++-+|.+-+ +++|.+
T Consensus 109 l~~~p~y~~~~~~~~~~g~-~~~~v--~-----~~~~l~----~~-----~~~~v~~~~p~NPtG~~~~~~~~~~i~~-- 169 (357)
T TIGR03539 109 VIPELAYPTYEVGALLAGA-TPVAA--D-----DPTELD----PV-----GPDLIWLNSPGNPTGRVLSVDELRAIVA-- 169 (357)
T ss_pred EECCCCcHHHHHHHHhcCC-EEecc--C-----ChhhcC----cc-----CccEEEEeCCCCCcCccCCHHHHHHHHH--
Confidence 677888887776664 454 44444 2 222222 11 2556666778888898755 666777
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+.+
T Consensus 170 ------------------~a~~~~~-------~ii~De~y~~~ 187 (357)
T TIGR03539 170 ------------------WARERGA-------VVASDECYLEL 187 (357)
T ss_pred ------------------HHHHcCe-------EEEEecchhhh
Confidence 9999999 99999999754
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.064 Score=62.35 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=37.2
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
....+...+.++|.+.. ++. ....++|+......++++|+++++.|.++.
T Consensus 370 ~~~~l~~~~~~~Gv~i~-~~g-~~~~~irl~P~l~i~~~ei~~~~~~l~~~l 419 (421)
T PRK09792 370 IAQKIQQRALAQGLLLL-TCG-AYGNVIRFLYPLTIPDAQFDAAMKILQDAL 419 (421)
T ss_pred HHHHHHHHHHHCCcEEe-ecC-CCCCEEEEeCCCcCCHHHHHHHHHHHHHHH
Confidence 45678888888997542 211 124689998878899999999998888765
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.031 Score=62.89 Aligned_cols=124 Identities=11% Similarity=-0.094 Sum_probs=80.7
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++.+|+.++.+.+ ..++|+|++++...++.+ +. + ++ .|++.+-+....
T Consensus 61 ~Lr~aia~~~~v~~~----------~I~it~G~~~~i~~~~~~-----l~------~--------g~-~vlv~~P~y~~~ 110 (360)
T PRK07392 61 ELRLALAQHHQLPPE----------WILPGNGAAELLTWAGRE-----LA------Q--------LR-AVYLITPAFGDY 110 (360)
T ss_pred HHHHHHHHHhCcChh----------hEEECCCHHHHHHHHHHH-----hC------C--------CC-eEEEECCCcHHH
Confidence 445566666677654 688999999987655432 10 1 12 355555555566
Q ss_pred HHHHHHCCccEEEEecCCCCC-----cCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDDKLS-----LRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~gr-----mD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~ 389 (943)
..++..-+.+++.++.+.++. .+.+++++... .+.+++.+-..+-||.+-+-++|.+
T Consensus 111 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~nP~NPTG~~~~~~~l~~----------- 172 (360)
T PRK07392 111 RRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQLT-------PNDGLLLNNPHNPTGKLWSREAILP----------- 172 (360)
T ss_pred HHHHHHcCCeEEEEecccccCCcccccCHHHHHHhcc-------CCCEEEEeCCCCCCCCCcCHHHHHH-----------
Confidence 666654445888899875443 34554443221 2456666678899999988888988
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++++++ .+ +|-+|..+
T Consensus 173 ---------l~~~~~~-------~I-iDE~y~~~ 189 (360)
T PRK07392 173 ---------LLEQFAL-------VV-VDEAFMDF 189 (360)
T ss_pred ---------HHHHCCE-------EE-EECchhhh
Confidence 8988876 45 49999765
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0096 Score=67.82 Aligned_cols=158 Identities=11% Similarity=0.030 Sum_probs=96.6
Q ss_pred HHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhccc
Q psy11047 210 DMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQS 289 (943)
Q Consensus 210 d~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~ 289 (943)
+.|...++..-+.|. -...++-..+.+|..+-.+|... ..+.+|++|---+.-+++- .+ .
T Consensus 45 ~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~--------~e~i~~~p~VVpgi~~~I~----~~------T 104 (388)
T COG1168 45 EALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIK--------PEWIVFVPGVVPGISLAIR----AL------T 104 (388)
T ss_pred HHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCC--------cceEEEcCcchHhHHHHHH----Hh------C
Confidence 444444443322232 33345667789999999988754 1357777765444433322 11 1
Q ss_pred CCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEec---CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCc
Q psy11047 290 HPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIES---DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPA 366 (943)
Q Consensus 290 ~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~---D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~ 366 (943)
.+| +.|++- .-..+.+.++...-+.++...|. |..+.||.++|++++.... +.+.+.+-.-+-
T Consensus 105 ~~g--------d~Vvi~-tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~-----vkl~iLCnPHNP 170 (388)
T COG1168 105 KPG--------DGVVIQ-TPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER-----VKLFILCNPHNP 170 (388)
T ss_pred cCC--------CeeEec-CCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCC-----ccEEEEeCCCCC
Confidence 233 334443 33555567776555556776664 4566789999999998763 456666677778
Q ss_pred cccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 367 FLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 367 tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|.+ +.|.+|++ +|++||+ .=++==+|.|=.++|.
T Consensus 171 ~Grvwt~eeL~~i~e--------------------lc~kh~v--~VISDEIHaDlv~~g~ 208 (388)
T COG1168 171 TGRVWTKEELRKIAE--------------------LCLRHGV--RVISDEIHADLVLGGH 208 (388)
T ss_pred CCccccHHHHHHHHH--------------------HHHHcCC--EEEeecccccccccCC
Confidence 8877 66888888 9999998 1111125666667664
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.019 Score=67.47 Aligned_cols=54 Identities=7% Similarity=-0.072 Sum_probs=40.5
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAELA 700 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~~ 700 (943)
...+...+.++|.+ +.+. + .++|+.....+|++||+++++.+.++..++.+..+
T Consensus 402 a~~i~~~~~~~Gvl-~~~~---g-~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~~~~ 455 (460)
T PRK06105 402 GARANAAAHEHGVI-SRAM---G-DTLAFCPPLIITAAQVDEMVDRFGRALDDVAAWVA 455 (460)
T ss_pred HHHHHHHHHHCCeE-EEec---C-CEEEEECCCccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677778888854 4432 2 48998777778999999999999999887766543
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.04 Score=64.91 Aligned_cols=158 Identities=15% Similarity=0.043 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhcc----CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINCL----GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTE 281 (943)
Q Consensus 206 silgd~L~~alN~n----~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~ 281 (943)
..+...+...+... ...+........|=..+.++++...|..-. ....++|+|+++|..+.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~--------~~~IiiT~G~q~al~l~~~~---- 174 (459)
T COG1167 107 EALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCE--------PEQIVITSGAQQALDLLLRL---- 174 (459)
T ss_pred HHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccC--------cCeEEEeCCHHHHHHHHHHH----
Confidence 45555555554222 223333344556666777777767777643 13689999999997644322
Q ss_pred HHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcE-EEEE
Q psy11047 282 AIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPF-FIFS 360 (943)
Q Consensus 282 ~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~-~VVa 360 (943)
+ ..|| -.|.+-+-+++....+...-+.+++.||+|++| ||+++|++.+.... |. +.+.
T Consensus 175 -l-----~~pG---------d~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G-~~~e~le~~~~~~~-----~k~~y~~ 233 (459)
T COG1167 175 -L-----LDPG---------DTVLVEDPTYPGALQALEALGARVIPVPVDEDG-IDPEALEEALAQWK-----PKAVYVT 233 (459)
T ss_pred -h-----CCCC---------CEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCC-CCHHHHHHHHhhcC-----CcEEEEC
Confidence 1 0133 357788889998888886544599999998555 89999999998752 33 3333
Q ss_pred ecCCCcccccccHH---HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 361 GLALPAFLVVDSYC---CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 361 TaGTT~tGaIDpL~---eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
....+-+|..-+++ +|.+ +|++|++ |+-=|..|+-.
T Consensus 234 P~~qNPtG~tms~~rR~~Ll~--------------------lA~~~~~-------~IIEDD~y~el 272 (459)
T COG1167 234 PTFQNPTGVTMSLERRKALLA--------------------LAEKYDV-------LIIEDDYYGEL 272 (459)
T ss_pred CCCCCCCCCccCHHHHHHHHH--------------------HHHHcCC-------eEEeeCcchhh
Confidence 34566677776654 5555 8999999 99999999866
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.035 Score=64.60 Aligned_cols=132 Identities=12% Similarity=0.054 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
+..+.++.+.|++++.. . ....|+++|||||-.|+..||.+. | .+-++.+...
T Consensus 92 ~~~~~~la~~l~~~~p~-~----------~~v~f~~sGseA~e~AlklAr~~t---------g-------r~~ii~~~~~ 144 (428)
T PRK12389 92 TELEIEFAKMLKEAIPS-L----------EKVRFVNSGTEAVMTTIRVARAYT---------G-------RTKIIKFAGC 144 (428)
T ss_pred CHHHHHHHHHHHHhCCC-C----------cEEEEeCCHHHHHHHHHHHHHHhh---------C-------CCEEEEECCC
Confidence 34455666777776631 1 257899999999999999999752 1 1123333444
Q ss_pred CchHHHHHHHH-CC------------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc
Q psy11047 310 AHSSVEKAGLI-GL------------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 310 aHySv~KAa~L-G~------------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI 370 (943)
-|=...-++.+ |. ..+..+|-+ |.++|++.|+... ..+.+|+.----...|.+
T Consensus 145 yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~---~~vaavi~EPv~g~~G~~ 216 (428)
T PRK12389 145 YHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFN-----DIEALKEALDKWG---DEVAAVLVEPIVGNFGIV 216 (428)
T ss_pred cCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCC-----CHHHHHHHHHhcC---CcEEEEEEeCCCCCCCCc
Confidence 44332222211 10 122333322 6889998887432 224444444333445667
Q ss_pred cc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 371 DS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 371 Dp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-| +.++.+ +|++||+ .+.+|-.+.|+
T Consensus 217 ~p~~~yl~~l~~--------------------lc~~~g~-------llI~DEV~tG~ 246 (428)
T PRK12389 217 EPKPGFLEAVNE--------------------LAHEAGA-------LVIYDEVITAF 246 (428)
T ss_pred CCCHHHHHHHHH--------------------HHHHcCC-------EEEEEcccccc
Confidence 66 888888 9999999 99999998877
|
|
| >KOG1359|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0033 Score=69.26 Aligned_cols=290 Identities=14% Similarity=0.106 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
.+-+..-..+|++=|-+ +-++.+++-.||.-++-+- + + ++..||.-+.-
T Consensus 112 ~iHk~LE~kiAqfh~rE------------D~ilypscfdANag~feai----l------~---------pedAvfSDeLN 160 (417)
T KOG1359|consen 112 DIHKLLESKIAQFHGRE------------DTILYPSCFDANAGAFEAI----L------T---------PEDAVFSDELN 160 (417)
T ss_pred HHHHHHHHHHHHHhCCC------------ceEEeccccccchHHHHHh----c------C---------hhhhhhccccc
Confidence 33344444567766554 3467788888885443321 1 1 22346666789
Q ss_pred chHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCc-ccccccHHHhhhhcccccccccc
Q psy11047 311 HSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPA-FLVVDSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 311 HySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~-tGaIDpL~eIa~~~~~~d~~~~~ 389 (943)
|.|+....+|-. -.+.+|+..|+..+.+.-. .-+-+|+|-|... -|-|-|+++|..
T Consensus 161 hASIIdGirLck---------ry~h~dv~~l~~~l~~a~k---~r~klv~TDg~FSMDGdiaPl~ei~~----------- 217 (417)
T KOG1359|consen 161 HASIIDGIRLCK---------RYRHVDVFDLEHCLISACK---MRLKLVVTDGVFSMDGDIAPLEEISQ----------- 217 (417)
T ss_pred cchhhhhhHHHh---------hhccchhHHHHHHHHHhhh---heEEEEEecceeccCCCcccHHHHHH-----------
Confidence 999887765532 3456778888876654322 1356777776543 589999999999
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhh
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR 469 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~ 469 (943)
++++||. .+.+|-|++-+ .| | ++|. ...+.
T Consensus 218 ---------La~kYga-------LlfiDecHaTg-f~--------G---------------------~tGr----Gt~E~ 247 (417)
T KOG1359|consen 218 ---------LAKKYGA-------LLFIDECHATG-FF--------G---------------------ETGR----GTAEE 247 (417)
T ss_pred ---------HHHhcCc-------EEEEeecccce-ee--------c---------------------CCCC----ChHHH
Confidence 9999999 99999999866 22 1 0000 01111
Q ss_pred hcCCCCeeEEEEcCCCccC------ccCcchhhhhc-ccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH
Q psy11047 470 IQGLGRAQNFTIVPSSLLR------VKNSGALHRTF-NVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI 542 (943)
Q Consensus 470 l~Gie~ADSItiDpHK~L~------vr~~~~L~~af-~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~ 542 (943)
+.-...+|-|.-...|-++ +-.+.-+.+.+ ...-+||+... ++-+=-.-+.|++..+...
T Consensus 248 ~~vm~~vdiinsTLgKAlGga~GGyttgp~~li~llrqr~RpylFSns-----------lppavV~~a~ka~dllm~s-- 314 (417)
T KOG1359|consen 248 FGVMGDVDIINSTLGKALGGASGGYTTGPKPLISLLRQRSRPYLFSNS-----------LPPAVVGMAAKAYDLLMVS-- 314 (417)
T ss_pred hCCCCcceehhhhhhhhhcCCCCCCccCChhHHHHHHhcCCceeecCC-----------CChhhhhhhHHHHHHHHhh--
Confidence 2112456777777777666 22222222222 12335665421 1110001122332222111
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEE
Q psy11047 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI 622 (943)
Q Consensus 543 ~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eI 622 (943)
.+.|.+ .....++|.+... ..+|.|
T Consensus 315 ---~~~i~~---------------------------------------------------~~a~~qrfr~~me-~aGftI 339 (417)
T KOG1359|consen 315 ---SKEIQS---------------------------------------------------RQANTQRFREFME-AAGFTI 339 (417)
T ss_pred ---HHHHHH---------------------------------------------------HHHHHHHHHHHHH-hcCcee
Confidence 111111 1123444544443 358888
Q ss_pred ecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEe---ecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 623 PAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV---PASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 623 l~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s---~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
....+. +|=-..|...+..++.+.|.++|...+. |+.-.++.-+|+.++...|++|||++++++.++++.
T Consensus 340 sg~~hP--I~pv~lGda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~ 412 (417)
T KOG1359|consen 340 SGASHP--ICPVMLGDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRF 412 (417)
T ss_pred cCCCCC--ccceecccHHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHh
Confidence 774432 2222335556677888889999975543 334457778999888888999999999999988764
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.019 Score=65.55 Aligned_cols=125 Identities=12% Similarity=0.029 Sum_probs=82.5
Q ss_pred HHHHHHHHhC-CCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 236 TMNWLGKMIG-LPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 236 Vi~wLa~LlG-~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
....+++..| .+.+ ..+++.|++|..-..+.+.. .+| +. |+++.-+-..-
T Consensus 62 l~~a~a~~~~~~~~~----------~V~~gnGsde~i~~l~~~~~----------~~g--------d~-vl~~~Ptf~~Y 112 (356)
T COG0079 62 LRAALAEYYGVVDPE----------NVLVGNGSDELIELLVRAFV----------EPG--------DT-VLIPEPTFSMY 112 (356)
T ss_pred HHHHHHHHhCCCCcc----------eEEEcCChHHHHHHHHHHhh----------cCC--------CE-EEEcCCChHHH
Confidence 4445677777 4432 35557777777643333211 122 22 33333333333
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++..-+.+++.|+.++ +.+|.+++.+++.++ +.+|..+--++-||..-+.++|.+
T Consensus 113 ~~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~~~~------~~lv~i~nPNNPTG~~~~~~~l~~---------------- 169 (356)
T COG0079 113 EIAAQLAGAEVVKVPLKE-FRLDLDAILAAIRDK------TKLVFLCNPNNPTGTLLPREELRA---------------- 169 (356)
T ss_pred HHHHHhcCCeEEEecccc-cccCHHHHHHhhhcC------CCEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 445555555899999988 999999999999874 567888889999999988887777
Q ss_pred chHHHHHHc--CCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSY--FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~--Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++... +. ++-||-||.-+
T Consensus 170 ----l~~~~~~~~-------~vVvDEAY~eF 189 (356)
T COG0079 170 ----LLEALPEGG-------LVVIDEAYIEF 189 (356)
T ss_pred ----HHHhCCCCc-------EEEEeCchhhc
Confidence 55432 66 79999999755
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.046 Score=64.10 Aligned_cols=48 Identities=8% Similarity=-0.079 Sum_probs=37.2
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
...+.+++.++|.+ +.+ ...++|+.....+|++||+++++.++++..+
T Consensus 396 ~~~~~~~~~~~Gv~-~~~----~~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 396 GYEAFMKCFEKGLL-VRY----TGDTIALSPPLIIEKAQIDELVDALGDALRA 443 (445)
T ss_pred HHHHHHHHHHCCeE-Eee----cCCEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 35677888888854 432 2258999888889999999999999887654
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.015 Score=67.12 Aligned_cols=354 Identities=15% Similarity=0.083 Sum_probs=190.3
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHH-HHHHH--HHhccCccc--cCCh--hHHHHHHHHHHH
Q psy11047 167 EPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLG-DMLSD--AINCLGFTW--ASSP--ACTELEIITMNW 239 (943)
Q Consensus 167 ~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silg-d~L~~--alN~n~~~~--~~SP--aateLE~~Vi~w 239 (943)
.+.+-.+++.++.+...... ..+.|.|-=+-+.-.|+++- .++.. .+-.+ -.| +.|- .-..+|.+ ..
T Consensus 55 ~~~sE~e~l~~l~~ia~kN~---~~~sfiG~GyY~~~~P~vI~rnile~pewyTaY-TPYQpEISQGrLqaLfefQ--tl 128 (450)
T COG0403 55 KPLSEYEALAELKEIASKNK---VFTSFIGAGYYDTYTPPVILRNILENPEWYTAY-TPYQPEISQGRLEALFEFQ--TL 128 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCc---hhhhhccCcccCCcCcHHHHHHhhcCccccccC-CCCchhhhhHHHHHHHHHH--HH
Confidence 34588899999988654332 34556443222223455554 44431 11100 011 1111 12233333 46
Q ss_pred HHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH
Q psy11047 240 LGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL 319 (943)
Q Consensus 240 La~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~ 319 (943)
+++|.|++-. ..-+--+||.+- .|+..|+.... .++-.++++...|........
T Consensus 129 v~dLTGm~VA----------NASm~DeaTAaA-EAm~ma~r~~k---------------~k~~~~~V~~~vhpqt~~Vl~ 182 (450)
T COG0403 129 VADLTGLDVA----------NASMLDEATAAA-EAMLMAKRVTK---------------KKRNKFLVPKDVHPQTLDVLR 182 (450)
T ss_pred HHHHhCCCcc----------cchhhhhHHHHH-HHHHHHHHhhc---------------CcCceEEecCCCCHHHHHHHH
Confidence 8999999854 233445566543 55555543210 013458899999998776663
Q ss_pred ---HCC-ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCc
Q psy11047 320 ---IGL-VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTN 395 (943)
Q Consensus 320 ---LG~-~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~Rr 395 (943)
-|. .++..++.+ |.++|++. ... -.+.|+....++.-+.+.++.+|.+
T Consensus 183 Tra~~~g~~i~~~~~~-----d~~~l~~~-~~~-----~~~gv~vQyP~~~G~~~~d~~~l~~----------------- 234 (450)
T COG0403 183 TRAEGLGIEIEVVDAD-----DLDDLESA-DDG-----DVFGVLVQYPNTFGIVEEDLRALIE----------------- 234 (450)
T ss_pred hhcccCceEEEEeccc-----hhhhhhhc-ccc-----CeEEEEEecCCCCCccchhHHHHHH-----------------
Confidence 132 356666654 78888877 321 1566777666644337777999999
Q ss_pred hHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCC
Q psy11047 396 FPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGR 475 (943)
Q Consensus 396 fR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ 475 (943)
.++++|. .+-| +.. +..|++ +-|+ |--.
T Consensus 235 ---~~h~~~a-------l~~v----~aD-------plaL~L-------------------------L~pP------Ge~G 262 (450)
T COG0403 235 ---AAHSAGA-------LVIV----AAD-------PLALGL-------------------------LKPP------GEFG 262 (450)
T ss_pred ---HHhhcCC-------EEEE----Eec-------hhHhhc-------------------------cCCc------cccC
Confidence 8888876 3322 111 011110 1122 2225
Q ss_pred eeEEEEcCCCccC---ccCcchhhhhcccCcccccc-CC--CCccccc-C--cccc--C----CCCCcc-----------
Q psy11047 476 AQNFTIVPSSLLR---VKNSGALHRTFNVEPLYLRH-EN--SGLAIDY-M--HWQI--P----LSKRFR----------- 529 (943)
Q Consensus 476 ADSItiDpHK~L~---vr~~~~L~~af~~~p~YL~~-~~--~g~~~d~-~--~~ti--e----~SRrfr----------- 529 (943)
||-+.-|.+-++- +-.+ ....|...-.|.+. ++ -|...|- + -|.+ + -=||-.
T Consensus 263 ADIvvG~~QrfGvPmgfGGP--hag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaL 340 (450)
T COG0403 263 ADIVVGSAQRFGVPMGFGGP--HAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQAL 340 (450)
T ss_pred CceEEecCcccCCCcCCCCc--ceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHH
Confidence 7777777666655 1111 00111111122111 00 0100110 0 0111 1 112322
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHH
Q psy11047 530 -ALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 608 (943)
Q Consensus 530 -ALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~ 608 (943)
|+..-+.+-++|.+|+++..++ .++++.
T Consensus 341 lA~~As~y~~~hGp~GLk~iA~r---------------------------------------------------~~~~a~ 369 (450)
T COG0403 341 LALAASMYAVYHGPQGLKEIAER---------------------------------------------------IHRLAA 369 (450)
T ss_pred HHHHHHHHHHHhChHHHHHHHHH---------------------------------------------------HHHHHH
Confidence 2223334567899999988888 357888
Q ss_pred HHHHHHhCCC-CeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHH
Q psy11047 609 KFEALVLGDP-RFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNE 687 (943)
Q Consensus 609 ~l~~~L~~~p-~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~ 687 (943)
++++.|.++. +++++.+.-++-+.+++.. +..+.|+++-...|.-. .. + +...+=+.+.-.+|++||+.+|+.
T Consensus 370 ~la~~L~~~~~g~~~~~~~fFdt~~v~~~~--~~~~~l~~~~~~~G~~L-~~--~-~~~~~~ia~tEt~t~~~i~~l~~~ 443 (450)
T COG0403 370 YLAAGLKEIGAGVELVFDHFFDTFTVRVPE--EVAEALLAAAIAGGINL-RR--V-DADTVLIALTETTTKEDIDALVAA 443 (450)
T ss_pred HHHHHHhhcCCceEeccccceeeEEEecch--hHHHHHHHHHHhcCCce-ee--e-cCCceEEEeecccCHHHHHHHHHH
Confidence 9999998664 6999988889999999863 45677777776666421 10 1 112233456677889999999998
Q ss_pred HHHH
Q psy11047 688 IRNT 691 (943)
Q Consensus 688 I~~~ 691 (943)
+...
T Consensus 444 ~~~~ 447 (450)
T COG0403 444 FGGV 447 (450)
T ss_pred Hhhh
Confidence 8654
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.043 Score=64.63 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=40.6
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
+...+.+++.++|.+. .+ .+..++|+.....+|++||+++++.+.+...++.+
T Consensus 398 ~~~~i~~~~~~~Gll~-~~---~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~~ 450 (459)
T PRK05965 398 PADRIFDRAYANGLVF-RA---FGDGVLGFAPALCCTEGEFDLIFERTRKTLDDVLA 450 (459)
T ss_pred HHHHHHHHHHhCCeEE-Ee---cCCcEEEEECCCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 3456777788888654 32 24568999888889999999999999998877633
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.036 Score=64.86 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=39.6
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
....+.+.+.++|.+. .+.... ..++|+......++++|+.+++.|.+...++..
T Consensus 392 ~~~~l~~~~~~~Gvlv-~~~~~~-~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~~ 446 (451)
T PRK06918 392 LTANICKEANKRGLLL-LSAGTY-GNVIRVLMPLVITDEQLEEGLTIIEESLQACYE 446 (451)
T ss_pred HHHHHHHHHHHCCeEE-eecCCC-CCEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888654 332111 258999776668899999999999988876533
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.076 Score=61.74 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=35.6
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
+...+.+++.++|. ++.+....+ .++|+......++++|+++++.|.+..
T Consensus 370 ~~~~l~~~~~~~Gv-~i~~~~~~g-~~lr~~ppl~i~~~~i~~~~~~l~~~l 419 (421)
T PRK06777 370 FTRQYQRQALEEGL-LLLSCGVHG-NVIRFLYPLTIPDAQFSKALNILTRLL 419 (421)
T ss_pred HHHHHHHHHHhCCe-EEeecCCCC-CEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 45566677778885 455432222 589997766789999999998887763
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.15 Score=60.22 Aligned_cols=54 Identities=15% Similarity=0.032 Sum_probs=41.0
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
....+.+.+.++|.+ +.+. -.+..++|+......|++||+.+++.+++....+.
T Consensus 392 ~~~~~~~~~~~~Gv~-~~~~-g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 392 LTGKICWRAFELGLI-LPSY-GMFGNVIRITPPLVITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred HHHHHHHHHHhCCeE-Eeec-CCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 456777888888864 4432 11246899999999999999999999999987653
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0079 Score=66.43 Aligned_cols=115 Identities=10% Similarity=-0.044 Sum_probs=79.8
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE 315 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~ 315 (943)
+++++++.+|- ..++|+|++++....+.. +. +| ..|++.+-+++...
T Consensus 45 l~~~ia~~~~~-------------~I~vt~G~~~al~~~~~~-----~~------~g---------d~vlv~~P~y~~~~ 91 (311)
T PRK08354 45 LEEEFSKLFGE-------------PIVITAGITEALYLIGIL-----AL------RD---------RKVIIPRHTYGEYE 91 (311)
T ss_pred HHHHHHHHHCC-------------CEEECCCHHHHHHHHHHh-----hC------CC---------CeEEEeCCCcHHHH
Confidence 45688888872 378999999997544321 10 12 23667778888888
Q ss_pred HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHH---Hhhhhccccccccccccc
Q psy11047 316 KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYC---CLGTAMIVKGLGFYKMKL 392 (943)
Q Consensus 316 KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~---eIa~~~~~~d~~~~~i~L 392 (943)
+++.+-+.+++.+ .+|++.|++.++. +.+++.+...+-+|.+-+.+ +|.+
T Consensus 92 ~~~~~~g~~~~~~------~~d~~~l~~~~~~-------~~~vi~~~P~NPTG~~~~~~~l~~l~~-------------- 144 (311)
T PRK08354 92 RVARFFAARIIKG------PNDPEKLEELVER-------NSVVFFCNPNNPDGKFYNFKELKPLLD-------------- 144 (311)
T ss_pred HHHHHcCCEEeec------CCCHHHHHHhhcC-------CCEEEEecCCCCCCCccCHHHHHHHHH--------------
Confidence 8885433355544 3578888877652 23456667788999987754 5555
Q ss_pred cCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 393 QTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 393 ~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ |+.+|.+|+.+
T Consensus 145 ------~a~~~~~-------~li~De~y~~f 162 (311)
T PRK08354 145 ------AVEDRNA-------LLILDEAFIDF 162 (311)
T ss_pred ------HhhhcCc-------EEEEeCcchhc
Confidence 7889999 99999999876
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.02 Score=65.44 Aligned_cols=108 Identities=10% Similarity=-0.038 Sum_probs=67.4
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCc-----------cEEEE
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLV-----------NMRYI 328 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~-----------~v~~V 328 (943)
..++|+|++++... +. + .+. +| + .|++.+-++.....++..-+. .+..|
T Consensus 97 ~I~it~Ga~~al~~-l~-~---l~~------~g--------d-~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v 156 (402)
T TIGR03542 97 EIFISDGAKCDVFR-LQ-S---LFG------SD--------N-TVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYL 156 (402)
T ss_pred HEEECCCcHHHHHH-HH-H---hcC------CC--------C-EEEEeCCCCcchHHHHHHcCCccccccccccceEEEe
Confidence 68899999998754 22 1 111 22 1 244455555555666543333 77778
Q ss_pred ecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCC
Q psy11047 329 ESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFP 405 (943)
Q Consensus 329 p~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl 405 (943)
++++.+.++.+. .+ . ..+.+|+.+-..+-||.+-+ +++|.+ +|++||+
T Consensus 157 ~~~~~~~~~~~~-~~---~-----~~~~~i~l~nP~NPTG~~~s~~~~~~l~~--------------------~a~~~~~ 207 (402)
T TIGR03542 157 PCTKENNFIPDL-PE---E-----PKIDIIYLCSPNNPTGTVLTKEQLKELVD--------------------YANEHGS 207 (402)
T ss_pred ecchhhCCCCCc-cc---c-----CCceEEEEeCCCCCCCccCCHHHHHHHHH--------------------HHHHcCe
Confidence 876443333321 11 0 12456666678888998866 667777 8999999
Q ss_pred CCCccchhhhHHhhhcCC
Q psy11047 406 KFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 406 ~~~~l~lwLHVDAA~GG~ 423 (943)
|+.+|.+|+-+
T Consensus 208 -------~iI~De~y~~~ 218 (402)
T TIGR03542 208 -------LILFDAAYSAF 218 (402)
T ss_pred -------EEEEEchhhhh
Confidence 99999999865
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0014 Score=75.87 Aligned_cols=148 Identities=10% Similarity=-0.045 Sum_probs=102.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|..+....+|-..+.+|+.+..|++-. ....++|+|++++...++.+.. . .+| +
T Consensus 103 Y~~~~G~~~LR~aia~~~~~~~g~~~~--------~~~I~it~Ga~~al~~~~~~l~----~-----~pG--------d- 156 (407)
T PLN02368 103 YSDSRGLPGVRKEVAEFIERRDGYPSD--------PELIFLTDGASKGVMQILNAVI----R-----GEK--------D- 156 (407)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCC--------hhhEEEcccHHHHHHHHHHHHc----C-----CCC--------C-
Confidence 333334456777788888887786522 1368999999999876655421 0 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLG 377 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa 377 (943)
.|++.+=+......++.+-+.+++.+++++ ++.+|+++|+++++....++..+.+++.+-..+-||.+-+ +++|.
T Consensus 157 ~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~ 236 (407)
T PLN02368 157 GVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREIL 236 (407)
T ss_pred EEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHH
Confidence 245555566566666654334888888864 4789999999999864333334667777778889998866 55566
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|++|++ |+-.|-+|+..
T Consensus 237 ~--------------------~a~~~~~-------~II~DE~Y~~l 255 (407)
T PLN02368 237 K--------------------FCYQERL-------VLLGDEVYQQN 255 (407)
T ss_pred H--------------------HHHHcCC-------EEEEEcccccc
Confidence 6 8999999 99999999865
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.046 Score=64.36 Aligned_cols=53 Identities=13% Similarity=-0.036 Sum_probs=40.1
Q ss_pred HHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy11047 643 EKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAELA 700 (943)
Q Consensus 643 ~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~~ 700 (943)
..+..++.++|.+. .+. + .++|+.....+|++||+++++.+.+...++.++++
T Consensus 402 ~~~~~~~~~~Gll~-~~~---~-~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~~~~ 454 (456)
T PRK07480 402 TICRDHCFANGLIM-RAV---G-DRMIISPPLVITHAEIDELVEKARKALDATAAELG 454 (456)
T ss_pred HHHHHHHHHCCcEE-eec---C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667788888654 321 2 47898777778999999999999999888766553
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.098 Score=61.46 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=36.0
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
+...+.+++.++|.+ +.+. + ..+|+.....+|++||+.+++.+.+...++
T Consensus 397 ~~~~~~~~~~~~Gvl-~~~~---g-~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 397 YANAVADVARENGVL-VRPS---G-TKIILSPPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred HHHHHHHHHHhCCeE-EEec---C-CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 345677778888864 4332 2 357877666789999999999998887553
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.03 Score=66.99 Aligned_cols=127 Identities=9% Similarity=0.005 Sum_probs=91.5
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE 315 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~ 315 (943)
..+..|+.||.+.. -.++.|.|-||...+.+.- .+| -.|++....|-|+.
T Consensus 75 Aqe~aA~~fgAd~t-----------yFvvNGTS~ank~vi~a~~----------~~G---------D~VLvdRN~HKSi~ 124 (557)
T COG1982 75 AQELAARVFGADHT-----------YFVVNGTSTANKAVINAVL----------TPG---------DKVLVDRNCHKSIH 124 (557)
T ss_pred HHHHHHHHhCCCce-----------EEEECCccHHHHHHHHhhc----------CCC---------CEEEecCCccHHHH
Confidence 34456899999865 3567777777866655421 122 35788999999999
Q ss_pred HHHHH-CCccEEEEecCC-----CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccc
Q psy11047 316 KAGLI-GLVNMRYIESDD-----KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 316 KAa~L-G~~~v~~Vp~D~-----~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~ 389 (943)
-+..+ |...|...|.-+ -|.++.+.+.+++.+..... .+++.|. .|.-|.+-++++|.+
T Consensus 125 ~glilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~---k~~vitn-pTYdGv~~n~~~i~~----------- 189 (557)
T COG1982 125 HGLILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAE---KLAVITN-PTYDGVCYNLRKIVE----------- 189 (557)
T ss_pred HHHHHcCCceEEecCCCCccccccCCCCHHHHHHHHHhChhhh---eeEEEec-CccceEeecHHHHHH-----------
Confidence 99766 444555555433 46889999998887664321 3555554 456689999999999
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+..+++ |+-+|-|.+..
T Consensus 190 ---------~~~~~~a-------~v~~deah~~~ 207 (557)
T COG1982 190 ---------LLHHYGA-------WVLYDEAHPAH 207 (557)
T ss_pred ---------HHhhcCc-------eEEhhhcCccc
Confidence 9999999 99999999876
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.012 Score=68.35 Aligned_cols=133 Identities=17% Similarity=0.054 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
-+++|.++.+.+.++++.-+ ..-|+++||||++.|+..||-.-- .+.+|-+..
T Consensus 91 Pte~Ei~~Aell~~~~p~~e-----------~vrfvnSGTEAtmsAiRlARa~Tg----------------R~kIikF~G 143 (432)
T COG0001 91 PTELEVELAELLIERVPSIE-----------KVRFVNSGTEATMSAIRLARAYTG----------------RDKIIKFEG 143 (432)
T ss_pred CCHHHHHHHHHHHHhcCccc-----------EEEEecchhHHHHHHHHHHHHhhC----------------CCeEEEEcC
Confidence 36788888888888886532 467999999999999999996421 122333444
Q ss_pred CCchH----HHHHH----HHCC-----------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccc
Q psy11047 309 QAHSS----VEKAG----LIGL-----------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLV 369 (943)
Q Consensus 309 ~aHyS----v~KAa----~LG~-----------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGa 369 (943)
.-|-+ ..||. .+|. ..++.+|-+ |+++++++++... ....+|+.----.+.|.
T Consensus 144 ~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~g---~~IAaVIvEPv~gn~g~ 215 (432)
T COG0001 144 CYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEEAFEEYG---DDIAAVIVEPVAGNMGV 215 (432)
T ss_pred CCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHHHHHHcC---CcEEEEEeccccCCCCC
Confidence 44433 33322 1221 134555654 5999999998752 23566666666667788
Q ss_pred ccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 370 VDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 370 IDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|-| ++++.+ +|+++|. .+..|=-..|+
T Consensus 216 i~p~~~Fl~~Lr~--------------------lt~e~G~-------lLI~DEViTGF 246 (432)
T COG0001 216 VPPEPGFLEGLRE--------------------LTEEHGA-------LLIFDEVITGF 246 (432)
T ss_pred CCCCHHHHHHHHH--------------------HHHHcCc-------EEEEecchhhc
Confidence 877 555666 9999999 88888887776
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.043 Score=65.03 Aligned_cols=41 Identities=12% Similarity=-0.011 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHH
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTE 281 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~ 281 (943)
++.|.++.+.|++++..- ....|+.+|||||..|+..||.+
T Consensus 138 ~~~~~~lAe~l~~~~p~~-----------~~v~f~~SGsEA~e~AlklAR~~ 178 (474)
T PLN02482 138 CLLENVLAEMVIDAVPSV-----------EMVRFVNSGTEACMGVLRLARAY 178 (474)
T ss_pred CHHHHHHHHHHHHhCCCC-----------CEEEEeCChHHHHHHHHHHHHHh
Confidence 456677788888887321 25789999999999999999964
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.044 Score=70.24 Aligned_cols=52 Identities=13% Similarity=0.026 Sum_probs=38.3
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
....+.+++.++|.+ +.++.. ...++|+.....+|++||+.+++.+.++..+
T Consensus 919 ~~~~i~~~l~~~Gvl-~~~~g~-~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 919 ETAAICDRLLELGVI-MQPTGD-HLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred HHHHHHHHHHhCCeE-EeecCC-CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 356778888888864 444311 1358998777789999999999999987653
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.043 Score=63.72 Aligned_cols=134 Identities=13% Similarity=0.007 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
...+..+.++|++++... ....||.||||||..|+..||... | .+-+|.....
T Consensus 89 ~~~~~~la~~L~~~~~~~-----------~~v~~~~sGseA~e~Aik~a~~~~---------g-------~~~ii~~~~~ 141 (426)
T PRK00062 89 TELEVELAELVIELVPSI-----------EMVRMVNSGTEATMSAIRLARGYT---------G-------RDKIIKFEGC 141 (426)
T ss_pred CHHHHHHHHHHHHhCCCC-----------CEEEEecCHHHHHHHHHHHHHHHh---------C-------CCeEEEEcCc
Confidence 344556777777776311 247899999999999999998641 1 1224444555
Q ss_pred CchHHHHHHHH--------CCc---cE-E-----EEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc
Q psy11047 310 AHSSVEKAGLI--------GLV---NM-R-----YIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS 372 (943)
Q Consensus 310 aHySv~KAa~L--------G~~---~v-~-----~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp 372 (943)
-|-...-+..+ +.. .+ . .+.... -|+++|++.+.... ..+.+|+.--...+.|.+-|
T Consensus 142 yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~i~~~~---~~~aaiivEpv~~~~G~~~~ 215 (426)
T PRK00062 142 YHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPY---NDLEAVEELFEEYG---DEIAAVIVEPVAGNMGVVPP 215 (426)
T ss_pred cCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCC---CCHHHHHHHHHhCC---CcEEEEEEeCCcCCCCCcCC
Confidence 56543222211 100 00 0 111111 26889998886532 12445554433444677766
Q ss_pred ----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 ----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 ----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++|.+ +|++||+ ++.+|-++.|+
T Consensus 216 ~~~~l~~l~~--------------------l~~~~~~-------llI~DEv~~G~ 243 (426)
T PRK00062 216 KPGFLEGLRE--------------------LCDEHGA-------LLIFDEVMTGF 243 (426)
T ss_pred CHHHHHHHHH--------------------HHHHcCC-------EEEEeechhcc
Confidence 888888 9999999 99999999866
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.02 Score=67.08 Aligned_cols=49 Identities=8% Similarity=-0.019 Sum_probs=37.6
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
...+.+++.++|.+ +.. .+ ..+|+.....+|++||+++++.+.++..++
T Consensus 393 ~~~~~~~l~~~Gvl-~~~---~~-~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 393 AYEVFLKCFEKGLM-IRY---TG-DILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred HHHHHHHHHHCCcE-EEe---cC-CEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 45677788888864 432 12 579998888899999999999998877553
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.071 Score=62.99 Aligned_cols=54 Identities=20% Similarity=0.132 Sum_probs=40.4
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAELA 700 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~~ 700 (943)
...+.+.+.++|.+. .+. + .++|+.....+|++||+++++.+.++..++.+++.
T Consensus 405 ~~~~~~~~~~~Gvl~-~~~---~-~~~~l~Ppl~it~~~id~~~~~l~~al~~~~~~~~ 458 (466)
T PRK07036 405 GQRIDRHCQERGLLV-RPL---E-HLCVLSPPLIITRAQIDEIVAILRAAIEETADELA 458 (466)
T ss_pred HHHHHHHHHHCCcEE-eec---C-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888654 332 2 46787766778999999999999999888766654
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.16 Score=59.77 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=40.9
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
+...+.+++.++|.+. .+. + .++|+.....+|++||+++++.+++...++.++
T Consensus 398 ~~~~i~~~~~~~Gll~-~~~---g-~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~~ 450 (453)
T PRK06943 398 FSRRFFEAALERELLL-RPI---G-TTVYLMPPYVLDDDEIAWLAERTRATLDATLAE 450 (453)
T ss_pred HHHHHHHHHHHCCcEE-Eec---C-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3567778888889654 332 2 369998888899999999999999998877444
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.037 Score=64.47 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=41.7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
..++.+.+.+. .....+.++|.++|. ++.+. + .++|+.....+|++||+++++.+++...
T Consensus 366 G~~~~i~~~~~-~~~~~~~~~l~~~Gv-~~~~~---~-~~l~~~ppl~~t~~~id~~~~~l~~~l~ 425 (427)
T TIGR00508 366 GAIGVVEMYKP-VNVEELQKKFVEQGV-WIRPF---G-KLIYVMPPYIITTEQLQKLTAALIEALH 425 (427)
T ss_pred ccEEEEEECCc-cCHHHHHHHHHHCCe-EEEec---C-CEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 34455555422 224678888888885 45432 2 3788887778999999999999988753
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.02 Score=67.02 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=34.6
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
....+...|.++|. ++.+..... .+++...|++||+++++++++....+.
T Consensus 381 ~~~~~~~~l~~~Gv-~~~~~~~~~-----~~ls~~ht~~did~~~~a~~~~~~~~~ 430 (433)
T PRK00615 381 AFQTFYQSAFSKGV-YLSPSPFEA-----SFLSSAHSMENLDYAQNVLIDSLEKVF 430 (433)
T ss_pred HHHHHHHHHHHCCe-eecCccccc-----cceecCCCHHHHHHHHHHHHHHHHHHh
Confidence 34567788888885 444321111 245666799999999999999987764
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.1 Score=61.26 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=41.6
Q ss_pred HHHHHHHHHhccCcEEEeecc--cCC--CcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPAS--LRI--QGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~--~~g--~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
....+.+++.++|.+.. +.. ..+ ..++|+.....+|++||+++++.|++...++++.
T Consensus 381 ~~~~~~~~~~~~Gll~~-~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~~~ 441 (443)
T PRK07483 381 LHARIKREAMARGLMVY-PMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAALAA 441 (443)
T ss_pred HHHHHHHHHHHCCcEEE-ecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 34567788888997543 221 111 3589998888899999999999999998776653
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.05 Score=63.44 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=42.1
Q ss_pred ccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHH
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRN 690 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~ 690 (943)
..++.+.+.+. .....+.+++.++|.+ +.+ .+...+|+..+..+|++||+++++.+.+
T Consensus 373 G~~~~i~~~~~-~~~~~~~~~l~~~Gvl-~~~---~g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 373 GLMCAFDLPST-ADRDEVIRQLYREGVL-LLG---CGERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred ceeEEEEeCCH-HHHHHHHHHHHhCCeE-Eec---CCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 34556666432 3456788888888864 443 2346799999999999999999998875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.093 Score=61.73 Aligned_cols=288 Identities=12% Similarity=0.015 Sum_probs=161.5
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH-----------C--CccEE
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI-----------G--LVNMR 326 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L-----------G--~~~v~ 326 (943)
--.|+.+|||||=.|+..||.+.- ..-+|-....-|=...-++-+ | ...+.
T Consensus 119 ~~~f~~sGaeA~E~AiKiAr~~Tg----------------r~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~ 182 (447)
T COG0160 119 KVFFGNSGAEAVEAAIKIARAYTG----------------RPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVY 182 (447)
T ss_pred eEEecCCcHHHHHHHHHHHHHHhC----------------CCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeE
Confidence 578999999999999999997531 112333445555444433321 1 12477
Q ss_pred EEecCCCCC------------cCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhhhhccccccccccc
Q psy11047 327 YIESDDKLS------------LRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 327 ~Vp~D~~gr------------mD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~~~~~~d~~~~~i 390 (943)
.+|-....+ -..+.+++.|.........|.++++=---.+.|.+-| ++++.+
T Consensus 183 ~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~------------ 250 (447)
T COG0160 183 HVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRK------------ 250 (447)
T ss_pred EecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHH------------
Confidence 777543222 2334455656655555555666666544455566655 777777
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhh
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRI 470 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l 470 (943)
+|++||+ .+.+|-.+.|+-+ +|+.+.-++
T Consensus 251 --------~~~~~gi-------llI~DEVQtG~GR--------------------------------TG~~fa~E~---- 279 (447)
T COG0160 251 --------LCREHGI-------LLIADEVQTGFGR--------------------------------TGKMFAFEH---- 279 (447)
T ss_pred --------HHHHcCC-------EEEEeccccCCCc--------------------------------cccchhhhh----
Confidence 9999999 9999999998722 233333222
Q ss_pred cCCCCeeEEEEcCCCccC--ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHH
Q psy11047 471 QGLGRAQNFTIVPSSLLR--VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKH 548 (943)
Q Consensus 471 ~Gie~ADSItiDpHK~L~--vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~ 548 (943)
.|+ .-|-||+. |.++ .+=...+ ..++... ...|. ..+|+ ++.+..+...-++|..+=.+++.++
T Consensus 280 ~gv-~PDivt~a--K~ig~G~Pl~avv-----~r~ei~~-~~~g~----~~~Tf-~GNpva~Aaa~AvL~vie~e~L~~~ 345 (447)
T COG0160 280 FGV-EPDIVTLA--KSLGGGLPLSAVV-----GRAEIMD-WPPGG----HGGTF-GGNPVACAAALAVLDVIEEENLLER 345 (447)
T ss_pred cCC-CCCEEEec--ccccCCCceeEEe-----ccHHhcc-cCCcc----cCCCC-CcCHHHHHHHHHHHHHHHHccHHHH
Confidence 255 46777764 5444 1111111 0111111 00000 01121 2223333333345665555555555
Q ss_pred HHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC-C
Q psy11047 549 IREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR-H 627 (943)
Q Consensus 549 I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~-~ 627 (943)
...+ ...|.+.|.++-.+.| ++.++ -
T Consensus 346 a~~~--------------------------------------------------G~~l~~~L~~l~~~~~---~IgdVRG 372 (447)
T COG0160 346 AAEL--------------------------------------------------GEYLRDRLEELQEKHP---LIGDVRG 372 (447)
T ss_pred HHHH--------------------------------------------------HHHHHHHHHHHHhhcC---ceecccc
Confidence 5552 2345555555555554 33332 2
Q ss_pred ccE---EEEEec-----CCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 628 LGM---VVIRLL-----GENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 628 l~i---V~Fr~~-----g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
.|+ |-|.-+ +..++..++.+++.++|.+..+. . ....++|+..--..+++++|..++.|.++..++
T Consensus 373 ~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~-G-~~~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 373 LGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTC-G-PHGNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred cceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEecc-C-CCCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 222 122211 11267889999999999866542 1 125699998888899999999999999876653
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.039 Score=70.99 Aligned_cols=53 Identities=6% Similarity=-0.009 Sum_probs=40.3
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
....+.+++.++|.+ +.++.. ...++|+.....+|++||+++++.+.++..++
T Consensus 959 ~~~~i~~~~~~~Gvl-~~~~g~-~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 959 IARYVKNGARERGIL-IGTEGP-HDNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred HHHHHHHHHHhCCeE-EeccCC-CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 456788888888864 443211 13689999889999999999999999887654
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.2 Score=59.34 Aligned_cols=60 Identities=12% Similarity=-0.044 Sum_probs=43.3
Q ss_pred CccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 627 HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 627 ~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
..-++.+.+.+ ......+.+.+.++|.+ +.+. +..++|+.....+|++||+.+++.|.++
T Consensus 404 ~Glm~gie~~~-~~~~~~i~~~~~~~Gvl-~~~~---g~~~ir~~Ppl~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 404 RGTFIAWDTPD-EAKRDKLLKKARNNGVN-IGGC---GVKAIRLRPMLVFQKHHADIFLEIISKI 463 (464)
T ss_pred eEEEEEEecCC-HHHHHHHHHHHHHCCcE-EecC---CCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 34455666542 23456788888888864 4332 4568999999999999999999988764
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >KOG1357|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.003 Score=72.95 Aligned_cols=169 Identities=9% Similarity=0.010 Sum_probs=105.7
Q ss_pred CCCCCceeEEccCC-CChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCC
Q psy11047 188 HWQSPYMHAYFPAL-NSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTT 266 (943)
Q Consensus 188 ~~~sPrf~g~~~~~-~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsG 266 (943)
+..|=.|+||-.+. +..++.+..+-...++.+....+.+ ++++-.++-+-+|+++|.++. -+|..|
T Consensus 140 NlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G--~~~~hkelE~l~A~f~g~e~a-----------~vF~mG 206 (519)
T KOG1357|consen 140 NLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAG--TTEEHKELEELVARFLGVEDA-----------IVFSMG 206 (519)
T ss_pred eecccccccccccCCcCChHHHHHHHHhcccccccchhcc--cHHHHHHHHHHHHHhcCCcce-----------EEEecc
Confidence 44566777775433 3344555444444444443333332 344555566677999999864 455555
Q ss_pred -hHHH-HHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHH
Q psy11047 267 -ASES-TLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEA 344 (943)
Q Consensus 267 -GTeA-NL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~a 344 (943)
||-| |+.+|+ .+..-|+.-+..|-|+.-.|+|.+..++...-+ |...|++.
T Consensus 207 f~TNs~~~p~l~----------------------~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN-----dm~~LEr~ 259 (519)
T KOG1357|consen 207 FATNSMNIPSLL----------------------GKGSLIISDELNHASLITGARLSGATTRVFRHN-----DMQGLERL 259 (519)
T ss_pred ccccccCcceee----------------------cCCcceeeccccchheeccccccCceEEEEecC-----CHHHHHHH
Confidence 1212 111111 122346667789999999998877677776654 36777877
Q ss_pred HHHhhccCC----Cc--EEEEEecCCC-cccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHH
Q psy11047 345 IERDKKKHL----IP--FFIFSGLALP-AFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 417 (943)
Q Consensus 345 I~~d~~kG~----~P--~~VVaTaGTT-~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVD 417 (943)
|++....|. .| .++++.-|-. ..|.++++.++.+ ++++|.. ++|+|
T Consensus 260 Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vva--------------------lkkkyka-------yl~lD 312 (519)
T KOG1357|consen 260 LRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVA--------------------LKKKYKA-------YLYLD 312 (519)
T ss_pred HHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHH--------------------hhccccE-------EEEee
Confidence 776554441 11 1344444444 7799999999999 9999999 99999
Q ss_pred hhhcCC
Q psy11047 418 ALVLGD 423 (943)
Q Consensus 418 AA~GG~ 423 (943)
.|+..+
T Consensus 313 EAHSiG 318 (519)
T KOG1357|consen 313 EAHSIG 318 (519)
T ss_pred cccccc
Confidence 998776
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.036 Score=64.71 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=44.2
Q ss_pred EEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 630 MVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 630 iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
++.+.+... .....+.++|.++|. ++.+. + .++|+.....+|++||+.+++.++++..++.
T Consensus 367 ~~~iel~~~-~~~~~i~~~l~e~Gi-~v~~~---g-~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~ 427 (429)
T PRK06173 367 IGVVEMKEP-VNMATLQPRFVEHGI-WVRPF---G-KLVYIMPPFIISPDELSQLTSGLLRVLKQEY 427 (429)
T ss_pred EEEEEeCCc-ccHHHHHHHHHHCCe-EEEec---C-CEEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 444555432 224678888888885 44432 3 4899988888999999999999999877654
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.023 Score=65.58 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=41.1
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
...+.+.+..+|.+... .+..++|+...--++++||+..++.++++.....
T Consensus 350 a~~~~~~~~~~gvL~~~----a~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~ 400 (404)
T COG4992 350 ARDIVRALREEGVLVLP----AGPNVIRFLPPLVITEEEIDEALDALERALAAAS 400 (404)
T ss_pred HHHHHHHHHHCCeEEec----CCCCeEEecCCccCCHHHHHHHHHHHHHHHHHhh
Confidence 57788889999965433 2455999999899999999999999999877654
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.11 Score=60.85 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCCCCe--EEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHH
Q psy11047 606 LAQKFEALVLGDPRF--EIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 606 LA~~l~~~L~~~p~~--eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ 683 (943)
+.+.+.++..+.|.+ ++- ..-.++.+.+.+ ......+.+++.++|.+ +.+. +..++|+.....+|++||+.
T Consensus 358 l~~~L~~l~~~~~~~~~~vr--g~G~~~~i~~~~-~~~~~~~~~~l~~~Gvl-~~~~---~~~~lr~~P~l~~t~~eid~ 430 (443)
T PRK08297 358 LLARLEELAAEFPAVVSNVR--GRGLMCAFDLPT-TADRDEVIRRLWEEGVL-VLPC---GERSIRFRPALTVTTEEIDA 430 (443)
T ss_pred HHHHHHHHHHHCCCcceeee--ccceEEEEEecC-HHHHHHHHHHHHHCCEE-EecC---CCCeEEEECCccCCHHHHHH
Confidence 344444444444433 221 234455666643 23456788888888864 4332 34579998888899999999
Q ss_pred HHHHHHHHHHH
Q psy11047 684 DWNEIRNTATE 694 (943)
Q Consensus 684 ll~~I~~~~~~ 694 (943)
+++.+.++..+
T Consensus 431 ~l~~l~~~l~~ 441 (443)
T PRK08297 431 AIDALRRALPE 441 (443)
T ss_pred HHHHHHHHHHh
Confidence 99999887654
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.32 Score=57.41 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=39.5
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
...+...+.++|.+. .++ +..++|+.....+|++||+++++.+++...++.+
T Consensus 403 ~~~~~~~~~~~Gvl~-~~~---~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~~ 454 (459)
T PRK06082 403 AEAVLYRCLNNGLSF-KVS---QGNVIQLSPPLIITREELTQALAILEEAIAKICQ 454 (459)
T ss_pred HHHHHHHHHhCCCEE-Eec---CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhh
Confidence 456777788888654 332 3468999887788999999999999998877643
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.12 Score=61.01 Aligned_cols=49 Identities=12% Similarity=-0.092 Sum_probs=39.1
Q ss_pred HHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 643 EKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 643 ~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
..+.+++.++|.+ +.+. + .++|+.....+|++||+.+++.+++...+++
T Consensus 400 ~~i~~~~~~~Gvl-~~~~---g-~~i~~~Ppl~it~~eid~~~~~l~~al~~~~ 448 (466)
T PRK07030 400 LKVYQHALERGAL-LRPL---G-SVVYFLPPYVITPEQIDFLAEVASEGIDIAT 448 (466)
T ss_pred HHHHHHHHHCCeE-EEec---C-CEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 4677788888864 4332 3 4799988889999999999999999988873
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.07 Score=59.99 Aligned_cols=79 Identities=11% Similarity=-0.005 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHH
Q psy11047 607 AQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWN 686 (943)
Q Consensus 607 A~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~ 686 (943)
.+++.+.|++. ++++. +..+.+.+++. + ..++.+.|.++|.+. ... ....++|+++. .+.++.+++++
T Consensus 258 r~~l~~~L~~~-g~~~~--~~~~f~~~~~~--~--~~~l~~~l~~~GI~v-r~~--~~~~~lRisi~--~~~~e~~~l~~ 325 (339)
T PRK06959 258 GARLAALLRAH-GFAVH--ATPLFSWTDDP--R--AAALHAALARRGIWT-RYF--APPPSVRFGLP--ADEAEWQRLED 325 (339)
T ss_pred HHHHHHHHHHC-CCCcc--CcceEEEEeCC--C--HHHHHHHHHhCCeEE-EEC--CCCCeEEEECC--CCHHHHHHHHH
Confidence 34555566555 45554 22333334432 2 467888899988643 322 33458999652 35579999999
Q ss_pred HHHHHHHHHHH
Q psy11047 687 EIRNTATEILA 697 (943)
Q Consensus 687 ~I~~~~~~ll~ 697 (943)
+|+++.+.+.+
T Consensus 326 al~~~~~~~~~ 336 (339)
T PRK06959 326 ALAECVPTLAA 336 (339)
T ss_pred HHHHHHHHHhh
Confidence 99887766554
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.16 Score=59.97 Aligned_cols=47 Identities=15% Similarity=0.049 Sum_probs=36.4
Q ss_pred HHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 643 EKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 643 ~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
..+..++.++|.+ +.+. + .++|+.....+|++||+.+++.+++...+
T Consensus 409 ~~i~~~~~~~Gvl-~~~~---g-~~l~~~Ppl~it~~~id~~~~~l~~~l~~ 455 (460)
T PRK06916 409 VQVCKRSRELGML-TRPL---G-NTIVFMPPLASTIDELDEMLRILYKAISD 455 (460)
T ss_pred HHHHHHHHHCCeE-EEec---C-CEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 4677788888854 4332 2 48999888899999999999999887654
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.049 Score=68.85 Aligned_cols=78 Identities=9% Similarity=0.053 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHH
Q psy11047 604 VRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 604 ~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ 683 (943)
++.|.++++.|.+ +++++..++-++-+.+++ +.. ..++.++-.++|.-+.. . +...+.+++.-.+|.+|++.
T Consensus 362 ~~~a~~l~~~l~~-~g~~~~~~~fF~~~~v~~-~~~--~~~~~~~a~~~~~n~r~---~-~~~~~~~s~de~~~~~~~~~ 433 (954)
T PRK12566 362 HRLTAILAAGLEA-KGIKRLNRHFFDTLTLEV-GGA--QAAIIESAEAARINLRI---L-GRGRLGVSLDETCDEATVAR 433 (954)
T ss_pred HHHHHHHHHHHHh-cCCccccCCccceEEEEc-cCC--HHHHHHHHHHCCCeeEE---e-CCCeEEEEeCCCCCHHHHHH
Confidence 5678888888888 799999888788888887 312 45677766666653322 1 23468889999999999999
Q ss_pred HHHHHH
Q psy11047 684 DWNEIR 689 (943)
Q Consensus 684 ll~~I~ 689 (943)
+++.+.
T Consensus 434 ~~~~f~ 439 (954)
T PRK12566 434 LFDIFL 439 (954)
T ss_pred HHHHhc
Confidence 999885
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.34 Score=57.38 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=39.1
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
+...+...+.++|.+. .+.. ....++|+......|++||+.+++.+.+...++.
T Consensus 409 ~~~~~~~~~~~~Gll~-~~~g-~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~ 462 (464)
T PRK06938 409 LASLIQRECLRRGLIL-ELGG-RHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAAV 462 (464)
T ss_pred HHHHHHHHHHHCCeEE-eecC-CCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHh
Confidence 3456777788888643 3321 1235899988888999999999999998876643
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.18 Score=57.24 Aligned_cols=134 Identities=4% Similarity=-0.147 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
..++-..+.+|+++..|.+-. ....++|+|++++....+.+.. .. . +...|++..
T Consensus 62 ~~~lr~aia~~l~~~~g~~~~--------~~~I~it~G~~~al~~~~~~~~---~~-----~---------~gd~vlv~~ 116 (374)
T PRK05839 62 EESLREAQRGFFKRRFKIELK--------ENELIPTFGTREVLFNFPQFVL---FD-----K---------QNPTIAYPN 116 (374)
T ss_pred CHHHHHHHHHHHHHHhCCCCC--------cceEEEecCcHHHHHHHHHHHh---cC-----C---------CCCEEEECC
Confidence 346666788888888785421 1367899999988755443210 00 0 112355555
Q ss_pred CCchHHHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVK 383 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~ 383 (943)
-+......++...+.+++.++.+++ +.+|..+. .+. + +.+|+.+--.+-||.+-+ +++|.+
T Consensus 117 P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~--~~~-----~--~k~v~i~nP~NPTG~~~s~~~l~~i~~----- 182 (374)
T PRK05839 117 PFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEK--ELQ-----E--VDLVILNSPNNPTGRTLSLEELIEWVK----- 182 (374)
T ss_pred CCchhhHHHHHhcCCEEEEeecccccCCcCCcchh--hhc-----c--ccEEEEeCCCCCcCcccCHHHHHHHHH-----
Confidence 5666666666544458899998754 44444432 221 1 456666677788898866 556666
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+-+|-+|+..
T Consensus 183 ---------------~~~~~~~-------~ii~DE~Y~~~ 200 (374)
T PRK05839 183 ---------------LALKHDF-------ILINDECYSEI 200 (374)
T ss_pred ---------------HHHHcCC-------EEEeccchhhc
Confidence 8999999 99999999864
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.099 Score=61.14 Aligned_cols=46 Identities=11% Similarity=-0.039 Sum_probs=35.9
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
...+.+.+.++|.+ +.+. + .++|+.....+|++||+++++.+.+..
T Consensus 376 ~~~~~~~l~~~Gl~-~~~~---g-~~i~~~Ppl~it~~ei~~~~~~l~~~l 421 (428)
T PRK07986 376 MAALQRFFVEQGVW-IRPF---G-KLIYLMPPYIILPEQLQRLTAAVNRAV 421 (428)
T ss_pred HHHHHHHHHHCCcE-EEec---C-CEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 45778888888864 4332 3 489998888899999999999988774
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.46 Score=56.14 Aligned_cols=54 Identities=11% Similarity=0.004 Sum_probs=40.2
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
...+.+.+.++|.+ +.+.. ....++|+.....+|++||+.+++.+.+...++.+
T Consensus 404 ~~~~~~~~~~~Gvl-~~~~~-~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~~ 457 (459)
T PRK06931 404 AAAIQKACFENGLL-LERGG-RNGNVVRLLPPLLITQAECEEFIDRFEQALLAAVK 457 (459)
T ss_pred HHHHHHHHHHCCcE-EeecC-CCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 45677777888865 33321 12368999888899999999999999998776554
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.23 Score=58.56 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHH
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTE 281 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~ 281 (943)
++.|.++.+.|+++++++ ...|+.+||||+..|+..||.+
T Consensus 114 ~~~~~~lAe~l~~~~~~~------------~v~F~nSGtEA~e~AlrlAR~~ 153 (453)
T PRK07046 114 SEDAAWVGEELARRFGLP------------YWQVATTATDANRFVLRWARAV 153 (453)
T ss_pred CHHHHHHHHHHHHHhCCC------------EEEEECCHHHHHHHHHHHHHHh
Confidence 567777888888888542 4689999999999999999964
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.22 Score=55.60 Aligned_cols=114 Identities=4% Similarity=-0.185 Sum_probs=73.7
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++.+++.+|.+ ..++|+|++++...++.+ .+| + .|++.+-+....
T Consensus 53 ~Lr~~ia~~~~~~------------~I~it~Gs~~al~~~~~~------------~~g--------d-~v~v~~P~y~~~ 99 (330)
T PRK05664 53 GLEAAARAYYGAP------------QLLPVAGSQAAIQALPRL------------RAP--------G-RVGVLSPCYAEH 99 (330)
T ss_pred HHHHHHHHHhCCC------------CEEECcCHHHHHHHHHHc------------cCC--------C-EEEEcCCChHHH
Confidence 3466777877742 478999999997554211 122 2 355566666666
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHH---Hhhhhcccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYC---CLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~---eIa~~~~~~d~~~~~i~ 391 (943)
..++...+.+++.||.+ ++++.+.. +.+++.+..++-||.+-+.+ +|.+
T Consensus 100 ~~~~~~~g~~~~~v~~~--------~~~~~~~~-------~~~v~l~nP~NPTG~~~s~~~l~~l~~------------- 151 (330)
T PRK05664 100 AHAWRRAGHQVRELDEA--------EVEAALDS-------LDVLVVVNPNNPTGRRFDPARLLAWHA------------- 151 (330)
T ss_pred HHHHHHcCCeEEEechh--------hHhhhhcC-------CCEEEEeCCcCCCCCccCHHHHHHHHH-------------
Confidence 77775444477778763 34444431 23455556778899886644 4555
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.|+++|. |+-+|-+|..+
T Consensus 152 -------~~~~~~~-------~iI~DE~y~~~ 169 (330)
T PRK05664 152 -------RLAARGG-------WLVVDEAFMDN 169 (330)
T ss_pred -------HHHhcCC-------EEEEECCcccC
Confidence 7788999 99999998644
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.39 Score=57.02 Aligned_cols=49 Identities=8% Similarity=-0.050 Sum_probs=38.2
Q ss_pred HHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 643 EKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 643 ~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
..+.+++.++|.+ +.+. + .++|+.....+|++||+.+++.+++...++.
T Consensus 421 ~~~~~~~~~~Gll-~~~~---g-~vi~~~PpL~it~~ei~~~~~~l~~~l~~~~ 469 (472)
T PRK08742 421 LHAYRAALARGVV-LRPL---G-DVLYWMPPYCVDEAQLALLADTTRHAIDEAV 469 (472)
T ss_pred HHHHHHHHHCCeE-EEec---C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4566777788864 3332 3 5899988888999999999999999877654
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00033 Score=83.75 Aligned_cols=132 Identities=23% Similarity=0.263 Sum_probs=90.8
Q ss_pred CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccc------cccHHHhh----hhccccccccccccccCchH-----H
Q psy11047 334 LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLV------VDSYCCLG----TAMIVKGLGFYKMKLQTNFP-----N 398 (943)
Q Consensus 334 grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGa------IDpL~eIa----~~~~~~d~~~~~i~L~RrfR-----~ 398 (943)
..++.-+..++|.-|.||++...+-|+.+-...... .++ .-+. +.....|+++|+++++|||| +
T Consensus 338 ~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~-~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~ 416 (539)
T PLN02590 338 KFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNP-EYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWM 416 (539)
T ss_pred HHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCH-HHhCCcccccccCCCccccCCCCCCchHHHHHHH
Confidence 344455556777788888865555555443333221 111 1111 00125789999999999999 5
Q ss_pred HHHHcCCCC------CccchhhhHHhhhcCCCccccccccccceeeeeecc-------hhhhHHHHHHHhhccCcccccc
Q psy11047 399 FILSYFPKF------QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLG-------ENILTEKLLKRLNSKGRLHCVP 465 (943)
Q Consensus 399 iar~~Gl~~------~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~-------~ne~n~kll~~l~~~G~~~~p~ 465 (943)
..+.||.++ +++++.-++-......+.|||++++.+++||||+.. .|++|++|+++++++|++++..
T Consensus 417 ~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~ 496 (539)
T PLN02590 417 VLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISH 496 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 567788876 556666666555666667999999999999999963 3788999999999999997765
Q ss_pred h
Q psy11047 466 A 466 (943)
Q Consensus 466 ~ 466 (943)
.
T Consensus 497 t 497 (539)
T PLN02590 497 T 497 (539)
T ss_pred e
Confidence 4
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.34 Score=56.56 Aligned_cols=58 Identities=14% Similarity=0.009 Sum_probs=40.4
Q ss_pred EEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 630 MVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 630 iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
++.+.+.+.. ....+.+.+.++|.+ +.+. + .++|+.....+|++||+++++.+++...
T Consensus 362 ~~~ie~~~~~-~~~~~~~~~~~~Gl~-~~~~---g-~~l~~~PpL~it~~~i~~~~~~l~~al~ 419 (422)
T PRK05630 362 IGVVEMEQPV-DMEEATQAAVDHGVW-LRPF---G-RLVYVMPPYITTSEQIAQICAALAAAVK 419 (422)
T ss_pred EEEEEECCcc-cHHHHHHHHHHCCeE-EEec---C-CEEEEECCccCCHHHHHHHHHHHHHHHh
Confidence 4455554321 145777788888854 4332 3 5899988888999999999999988754
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.23 Score=57.02 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=39.1
Q ss_pred HHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 643 EKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 643 ~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
..+.+++.++|.+. .+ .+..++|+.....+|++|++.+++.|++...+++
T Consensus 313 ~~i~~~~~~~Gll~-~~---~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~~ 362 (364)
T PRK04013 313 GKYVEELQNRGYLV-HT---AGQRVIRLLPPLIISKDTMEEAKSAIEGVINDIL 362 (364)
T ss_pred HHHHHHHHhCCcEE-ee---CCCCEEEEeCCcccCHHHHHHHHHHHHHHHHHHh
Confidence 56777888888653 33 2446899988888999999999999999887654
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.14 Score=59.40 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=84.7
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....+|..+ +.|=|. ..++.+++|..|...++++- + .+| -.
T Consensus 60 ~~nPT~~~lE~~~----a~LEg~------------~~~~afsSGmaAI~~~~l~l----l------~~G---------D~ 104 (396)
T COG0626 60 TGNPTRDALEEAL----AELEGG------------EDAFAFSSGMAAISTALLAL----L------KAG---------DH 104 (396)
T ss_pred CCCccHHHHHHHH----HHhhCC------------CcEEEecCcHHHHHHHHHHh----c------CCC---------CE
Confidence 3467888888754 555444 25788899988877665531 1 122 23
Q ss_pred EEecCCCchHHHHHH-H-H--CCccEEEEecCCCCCcCHHHHHHHHHH-hhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 304 AYCSDQAHSSVEKAG-L-I--GLVNMRYIESDDKLSLRGDKLIEAIER-DKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 304 V~~S~~aHySv~KAa-~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~-d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
|++++...-...+-+ . + .+..+..+.. .+.+++++++.+ + +.+|..=..|+.+.-+-||.+|++
T Consensus 105 vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~-----~~~~~~~~~~~~~~------tk~v~lEtPsNP~l~v~DI~~i~~ 173 (396)
T COG0626 105 VLLPDDLYGGTYRLFEKILQKFGVEVTFVDP-----GDDEALEAAIKEPN------TKLVFLETPSNPLLEVPDIPAIAR 173 (396)
T ss_pred EEecCCccchHHHHHHHHHHhcCeEEEEECC-----CChHHHHHHhcccC------ceEEEEeCCCCcccccccHHHHHH
Confidence 555555544444433 2 2 3445555544 245566666654 3 667777788888899999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ .+-||-.|+..
T Consensus 174 --------------------~A~~~g~-------~vvVDNTfatP 191 (396)
T COG0626 174 --------------------LAKAYGA-------LVVVDNTFATP 191 (396)
T ss_pred --------------------HHHhcCC-------EEEEECCcccc
Confidence 9999999 99999999876
|
|
| >KOG0259|consensus | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.29 Score=56.22 Aligned_cols=111 Identities=12% Similarity=0.010 Sum_probs=78.6
Q ss_pred CcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec--CCCchHHHHHHHHCCccEEEEe--cCCCC
Q psy11047 259 GGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS--DQAHSSVEKAGLIGLVNMRYIE--SDDKL 334 (943)
Q Consensus 259 ~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S--~~aHySv~KAa~LG~~~v~~Vp--~D~~g 334 (943)
.+.++|+|-+.|.-+++.+- . +|| .-|+.+ ...||... |...|. ++|+.. ++.++
T Consensus 127 ~DV~ltsGC~qAIe~~i~~L-----A-----~p~---------aNILlPrPGfp~Y~~~-a~~~~l-EVR~ydlLPe~~w 185 (447)
T KOG0259|consen 127 DDVVLTSGCSQAIELAISSL-----A-----NPG---------ANILLPRPGFPLYDTR-AIYSGL-EVRYYDLLPEKDW 185 (447)
T ss_pred CceEEeccchHHHHHHHHHh-----c-----CCC---------CceecCCCCCchHHHh-hhhcCc-eeEeecccCcccc
Confidence 47899999999988877641 1 233 113332 33444321 112343 555543 46899
Q ss_pred CcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccc
Q psy11047 335 SLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVR 411 (943)
Q Consensus 335 rmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~ 411 (943)
++|++.+|..++++ +++++..-..+-+|.+ +.|++|++ +|+++|+
T Consensus 186 eIDL~~veal~DEN------T~AivviNP~NPcGnVys~~HL~kiae--------------------~A~klgi------ 233 (447)
T KOG0259|consen 186 EIDLDGVEALADEN------TVAIVVINPNNPCGNVYSEDHLKKIAE--------------------TAKKLGI------ 233 (447)
T ss_pred eechHHHHHhhccC------eeEEEEeCCCCCCcccccHHHHHHHHH--------------------HHHHhCC------
Confidence 99999999999998 6777777777778866 77999999 9999999
Q ss_pred hhhhHHhhhcCC
Q psy11047 412 LAQKFEALVLGD 423 (943)
Q Consensus 412 lwLHVDAA~GG~ 423 (943)
.+..|--|+-.
T Consensus 234 -~vIaDEVY~~~ 244 (447)
T KOG0259|consen 234 -MVIADEVYGHT 244 (447)
T ss_pred -eEEehhhccee
Confidence 89999888765
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.016 Score=66.00 Aligned_cols=163 Identities=7% Similarity=-0.039 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhc-cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCc--EEEcCChHHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINC-LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGG--GVLQTTASESTLICLLAGRTEA 282 (943)
Q Consensus 206 silgd~L~~alN~-n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~--GvfTsGGTeANL~AL~aAR~~~ 282 (943)
..+.+.+..+... ....|.......++=..+.+|+.+.-+..-. ... .++|+|+++|...++.+-. .
T Consensus 47 ~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~--------~~~i~v~iT~Ga~~al~~~~~~l~--~ 116 (396)
T PRK09257 47 RAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALA--------AGRVATVQTPGGTGALRVGADFLK--R 116 (396)
T ss_pred HHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccc--------cCeEEEEecCCccHHHHHHHHHHH--H
Confidence 3455555555432 2223443334445555555665443221101 112 4899999999877764311 0
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEec-C-CCCCcCHHHHHHHHHHhhccCCCcEEEEE
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIES-D-DKLSLRGDKLIEAIERDKKKHLIPFFIFS 360 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~-D-~~grmD~daLe~aI~~d~~kG~~P~~VVa 360 (943)
+ .|| -.|++.+-+......++.+.+.+++.+|. + +++.+|+++|++++..... ...+++.
T Consensus 117 ~------~pG---------d~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~---~~~~~i~ 178 (396)
T PRK09257 117 A------FPD---------AKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPA---GDVVLLH 178 (396)
T ss_pred h------CCC---------CeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCC---CCEEEEe
Confidence 0 133 23666666665566666554458888887 2 4578999999998874211 1356666
Q ss_pred ecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 361 GLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 361 TaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+...+-||.+-+ +++|.+ +|++|++ |+..|-+|...
T Consensus 179 ~~p~NPTG~~~s~~~~~~l~~--------------------~a~~~~~-------~ii~De~Y~~l 217 (396)
T PRK09257 179 GCCHNPTGADLTPEQWDELAE--------------------LLKERGL-------IPFLDIAYQGF 217 (396)
T ss_pred CCCCCCCCCCCCHHHHHHHHH--------------------HHHhCCc-------EEEEecccccc
Confidence 677788888855 666777 9999999 99999999865
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.39 Score=56.13 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=33.2
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
...+.+++.++|.+. + . +.++...|++||+++++.+.++..++.+.
T Consensus 364 ~~~~~~~l~~~Gi~~--p-------~--l~is~~ht~~dId~~l~~l~~~l~~~~~~ 409 (431)
T PRK06209 364 RTLFLQETIRRGVLM--P-------S--LVVSYAHGDADIERTIDAVHGALGVYRKA 409 (431)
T ss_pred HHHHHHHHHHCCccc--c-------c--ccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888642 1 1 23446779999999999999998887443
|
|
| >KOG0256|consensus | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.21 Score=57.65 Aligned_cols=120 Identities=11% Similarity=0.024 Sum_probs=86.2
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH-HHCCccEEEEecC--CCCCc
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG-LIGLVNMRYIESD--DKLSL 336 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp~D--~~grm 336 (943)
..++|.|+|.||-+-+.+ +. .||. ..+++.--...+.+-+ +-.+.+++.|.++ +..++
T Consensus 148 ~~Vv~~G~T~ane~l~fc-----La-----dpgd---------afLvPtPyY~gfdrdl~~rTgveivpv~c~Ss~~f~i 208 (471)
T KOG0256|consen 148 RVVVTNGATSANETLMFC-----LA-----DPGD---------AFLVPTPYYPGFDRDLRWRTGVEIVPVHCSSSNGFQI 208 (471)
T ss_pred ceEEecccchhhHHHHHH-----hc-----CCCc---------eeeecCCCCCcccccceeccCceEEEEEeecCCCccc
Confidence 589999999998554443 11 2441 1233322222344434 3456688888765 46799
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchh
Q psy11047 337 RGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 413 (943)
Q Consensus 337 D~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lw 413 (943)
++++||+++++..+.|..+.-|+.|-.++-.|.+-+ |..+.. .+.++++ .
T Consensus 209 tv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~--------------------Fa~~kni-------H 261 (471)
T KOG0256|consen 209 TVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLN--------------------FASRKNI-------H 261 (471)
T ss_pred cHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHH--------------------HHhhcce-------E
Confidence 999999999999999998999999999999998766 444445 7889999 9
Q ss_pred hhHHhhhcCCCcc
Q psy11047 414 QKFEALVLGDPRF 426 (943)
Q Consensus 414 LHVDAA~GG~~af 426 (943)
+.+|--|.+. .|
T Consensus 262 vI~DEIya~s-VF 273 (471)
T KOG0256|consen 262 VISDEIYAGS-VF 273 (471)
T ss_pred EEeehhhccc-cc
Confidence 9999999988 55
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.039 Score=63.26 Aligned_cols=115 Identities=9% Similarity=-0.021 Sum_probs=81.0
Q ss_pred EcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHH
Q psy11047 263 LQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDK 340 (943)
Q Consensus 263 fTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~da 340 (943)
.|.||++|...++.+.+.. + .|| -.|++.+-+......++.+.+.+++.+|.. +++.+|.+.
T Consensus 102 ~t~G~~~al~~~~~~l~~~-~------~~G---------d~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~ 165 (404)
T PTZ00376 102 QALSGTGALRLGFEFLKRF-L------PAG---------TTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDG 165 (404)
T ss_pred eccCcchHHHHHHHHHHHh-c------CCC---------CEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHH
Confidence 4999999987666543321 1 123 235566666666666776555588889883 458999999
Q ss_pred HHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHH
Q psy11047 341 LIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 417 (943)
Q Consensus 341 Le~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVD 417 (943)
+++++..... ...+++.+-..+-||.+-+ +++|.+ +|++||+ |+..|
T Consensus 166 l~~~~~~~~~---~~~~~~~~~p~NPTG~~~s~~~~~~l~~--------------------~a~~~~~-------~ii~D 215 (404)
T PTZ00376 166 MLEDLRTAPN---GSVVLLHACAHNPTGVDPTEEQWKEIAD--------------------VMKRKNL-------IPFFD 215 (404)
T ss_pred HHHHHHhCCC---CCEEEEeCCCCCCCCCCCCHHHHHHHHH--------------------HHHhCCc-------EEEEe
Confidence 9999875311 1356666677888888754 666777 8999999 99999
Q ss_pred hhhcCC
Q psy11047 418 ALVLGD 423 (943)
Q Consensus 418 AA~GG~ 423 (943)
-+|..+
T Consensus 216 e~Y~~~ 221 (404)
T PTZ00376 216 MAYQGF 221 (404)
T ss_pred hhhcCc
Confidence 999876
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.25 Score=56.42 Aligned_cols=88 Identities=14% Similarity=0.021 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhCCCCeEEec---CCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHH
Q psy11047 604 VRLAQKFEALVLGDPRFEIPA---ARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDD 680 (943)
Q Consensus 604 ~~LA~~l~~~L~~~p~~eIl~---~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~ed 680 (943)
.+-|+.|++.+.+.+-+.-.. .+..--|||++.. .++...+++.+.++|.++... .+-.+-+|+++...+..++
T Consensus 273 ~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~-~~ld~~fv~eae~~gl~~lkG--hr~vgGmRasiynA~~~e~ 349 (365)
T COG1932 273 QAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVD-AELDKGFVAEAEAAGLIYLKG--HRSVGGLRASIYNAVPLED 349 (365)
T ss_pred HHHHHHHHHHHHhCCccccccchhhccceeEEEEcCc-HHHHHHHHHHHHHcCCceecc--ccCCCceeeeeecCCCHHH
Confidence 455777888888775443332 2334457899873 467889999999988776654 3333449999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy11047 681 ITRDWNEIRNTATE 694 (943)
Q Consensus 681 Id~ll~~I~~~~~~ 694 (943)
++.+++.|+...++
T Consensus 350 veaL~~fm~~f~~~ 363 (365)
T COG1932 350 VEALTDFMDWFEET 363 (365)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887553
|
|
| >KOG0053|consensus | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.27 Score=57.11 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=80.6
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
.|....+|.. ++.+-|.+ ..+..++|..|...|+..- ++ +| ..++
T Consensus 76 nPt~~~le~~----iaal~ga~------------~~l~fsSGmaA~~~al~~L----~~------~g---------~~iV 120 (409)
T KOG0053|consen 76 NPTRDVLESG----IAALEGAA------------HALLFSSGMAAITVALLHL----LP------AG---------DHIV 120 (409)
T ss_pred CCchHHHHHH----HHHHhCCc------------eEEEecccHHHHHHHHHHh----cC------CC---------CcEE
Confidence 4666677764 46777764 3567777776766665531 11 11 2244
Q ss_pred ecCCC----chHHHHHH-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 306 CSDQA----HSSVEKAG-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 306 ~S~~a----HySv~KAa-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
++... |.-+.+-. .+|. ....+.++ |.+.++++++++ +.+|-.=..++-++.+-||++|++
T Consensus 121 ~~~~~Y~gT~~~l~~~~~~~gi-e~~~vd~~-----~~~~~~~~i~~~------t~~V~~ESPsNPll~v~DI~~l~~-- 186 (409)
T KOG0053|consen 121 ATGDVYGGTLRILRKFLPKFGG-EGDFVDVD-----DLKKILKAIKEN------TKAVFLESPSNPLLKVPDIEKLAR-- 186 (409)
T ss_pred EeCCCcccHHHHHHHHHHHhCc-eeeeechh-----hHHHHHHhhccC------ceEEEEECCCCCccccccHHHHHH--
Confidence 44322 22233333 3343 44444443 367777777764 567777788899999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ .+-||..+|+.
T Consensus 187 ------------------la~~~g~-------~vvVDnTf~~p 204 (409)
T KOG0053|consen 187 ------------------LAHKYGF-------LVVVDNTFGSP 204 (409)
T ss_pred ------------------HHhhCCC-------EEEEeCCcCcc
Confidence 9999999 99999999887
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.053 Score=65.00 Aligned_cols=163 Identities=8% Similarity=-0.090 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhccCcccc-CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHH-HHHH
Q psy11047 205 PSLLGDMLSDAINCLGFTWA-SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAG-RTEA 282 (943)
Q Consensus 205 ~silgd~L~~alN~n~~~~~-~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aA-R~~~ 282 (943)
+.++-++....++. .|. ........|..+.+|+.+..+..... ......++|.|||+|..+++.+- .+.+
T Consensus 109 ~~~~~~~~~~~~~~---~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~-----~~~~~V~it~Gat~al~~~~~~l~~~~l 180 (521)
T TIGR03801 109 DAFLYEMCDGIIGD---NYPVPDRMLPHSEKIVHQYLIQEMCGNKPP-----PGEFDLFAVEGGTAAMCYIFDSLKANEL 180 (521)
T ss_pred CHHHHHHHHHhhcC---CCCCCCCCHHHHHHHHHHHHHhhccCCCCC-----CCcCeEEEeCCHHHHHHHHHHHHhHhhc
Confidence 35555665555543 343 23344567777767887765432110 00115889999999987776541 1111
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH-C-CccEEEEecCC--C-----CCcCHHHHHHHHHHhhccCC
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI-G-LVNMRYIESDD--K-----LSLRGDKLIEAIERDKKKHL 353 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L-G-~~~v~~Vp~D~--~-----grmD~daLe~aI~~d~~kG~ 353 (943)
+ .|| + .|++..-........+.+ | +..++.|+++. . +++|.++|+++++..
T Consensus 181 l------~pG--------D-~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~----- 240 (521)
T TIGR03801 181 L------KKG--------D-KIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPS----- 240 (521)
T ss_pred C------CCC--------C-EEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCC-----
Confidence 1 233 2 244444455445555543 3 34677777753 2 789999999876542
Q ss_pred CcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHc--CCCCCccchhhhHHhhhcCC
Q psy11047 354 IPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSY--FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 354 ~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~--Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+++.+-.++-||.+-+ +++|++ +|++| ++ |+-.|-+|+-+
T Consensus 241 -~kai~l~nP~NPTG~vls~e~l~~I~~--------------------ia~~~~~~l-------~II~DEvY~~f 287 (521)
T TIGR03801 241 -IKALFVVNPSNPPSVAMSDESIEKIVD--------------------IVANDRPDL-------MILTDDVYGTF 287 (521)
T ss_pred -CcEEEEeCCCCCCCCCCCHHHHHHHHH--------------------HHHhcCCCe-------EEEECCCchhh
Confidence 556666678899998866 666777 89887 78 99999999855
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >KOG2467|consensus | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.46 Score=54.43 Aligned_cols=313 Identities=14% Similarity=0.102 Sum_probs=163.8
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEE--EcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGV--LQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gv--fTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
.-...++|.-+...-.++||++++ .||| =.-+||-||+..-. |- ++ |+-+ | .-
T Consensus 81 ne~ID~iE~LCq~RALeaF~ldp~---------kWGVNVQp~SGSPANfavYt-al---l~------Ph~R---i---MG 135 (477)
T KOG2467|consen 81 NEYIDQIELLCQKRALEAFGLDPE---------KWGVNVQPYSGSPANFAVYT-AL---LK------PHER---I---MG 135 (477)
T ss_pred chHHHHHHHHHHHHHHHHhCCCHH---------HCceeeccCCCCchhhHHHh-hh---cC------CCCe---e---ee
Confidence 345788999999999999999876 3553 34588999975533 21 11 2100 0 01
Q ss_pred EEecCCCchHHHHH--H-HHCCccE----EEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHH
Q psy11047 304 AYCSDQAHSSVEKA--G-LIGLVNM----RYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCC 375 (943)
Q Consensus 304 V~~S~~aHySv~KA--a-~LG~~~v----~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~e 375 (943)
+-.++-.|-|---. . .+....+ ..-.+| ..|-+|.+.|++.-..- .|.++++ |+....-.-++..
T Consensus 136 LDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~f-----rPk~iia--G~SaY~R~~DYaR 208 (477)
T KOG2467|consen 136 LDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLF-----RPKLIIA--GTSAYSRLIDYAR 208 (477)
T ss_pred ccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhc-----CCcEEEe--ccccchhhccHHH
Confidence 12344455432110 0 1111111 111233 68999999999865543 3666664 4444333333444
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHh
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRL 455 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l 455 (943)
+. .+|.+-|. ++-+|-|+=.. . ++.
T Consensus 209 ~R--------------------~Iad~~gA-------~Lm~DMAHISg-L---VAA------------------------ 233 (477)
T KOG2467|consen 209 FR--------------------KIADKVGA-------YLMADMAHISG-L---VAA------------------------ 233 (477)
T ss_pred HH--------------------HHHHhcCc-------eeehhhhhHHH-H---Hhc------------------------
Confidence 44 49999999 88888885333 1 000
Q ss_pred hccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchh--hhhc-ccC------ccccccCCCCcccccC-ccccCCC
Q psy11047 456 NSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL--HRTF-NVE------PLYLRHENSGLAIDYM-HWQIPLS 525 (943)
Q Consensus 456 ~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L--~~af-~~~------p~YL~~~~~g~~~d~~-~~tie~S 525 (943)
|. .-.+ .++||-+|...||.|.=+....+ +.-. ..+ ..|=. ...+++. -.+++|+
T Consensus 234 ---~v-ipsP-------Fey~DiVTTTTHKsLRGPRg~mIFyRkGvk~~~~k~g~~i~ydl----E~kINfaVFP~lQGG 298 (477)
T KOG2467|consen 234 ---GV-IPSP-------FEYCDIVTTTTHKSLRGPRGAMIFYRKGVKSIKPKQGKEILYDL----EDKINFAVFPGLQGG 298 (477)
T ss_pred ---cc-CCCc-------ccccceeeccccccccCCcceeEEEeccCCcCCCCCCCcceech----hhhhhhhccccccCC
Confidence 00 1122 37899999999999982111111 0000 000 01100 0011221 2245555
Q ss_pred CCcch-HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHH
Q psy11047 526 KRFRA-LKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSV 604 (943)
Q Consensus 526 RrfrA-LklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~ 604 (943)
=.--. ..+-.+|+......|.++.+++ +
T Consensus 299 PHNhtIaalAvALkQa~tpefk~Yq~qV---------------------------------------------------~ 327 (477)
T KOG2467|consen 299 PHNHTIAALAVALKQAMTPEFKEYQKQV---------------------------------------------------L 327 (477)
T ss_pred CCcchHHHHHHHHHhhCCHHHHHHHHHH---------------------------------------------------H
Confidence 33222 2233355655555666665553 3
Q ss_pred HHHHHHHHHHhCCCCeEEec---CCCccEEEEEecCCC-hHHHHHHHHHh----ccCcEEEeecccCCCcEEEE----ee
Q psy11047 605 RLAQKFEALVLGDPRFEIPA---ARHLGMVVIRLLGEN-ILTEKLLKRLN----SKGRLHCVPASLRIQGLGRA----QN 672 (943)
Q Consensus 605 ~LA~~l~~~L~~~p~~eIl~---~~~l~iV~Fr~~g~n-~l~~~Ll~~L~----~~G~~~~s~t~~~g~~~lR~----v~ 672 (943)
..|+.|++.|.+. +++++. +.++=+|-.|.+|.+ ...+.+++.++ +.- ...-.+.-.++-+|+ .+
T Consensus 328 ~Nakala~~l~~~-Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNt--vpGD~Sal~PgGiRiGtPAmT 404 (477)
T KOG2467|consen 328 KNAKALASALISR-GYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNT--VPGDKSALSPGGIRIGTPAMT 404 (477)
T ss_pred HHHHHHHHHHHHc-CceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCc--CCCCccccCCCceeccchhhc
Confidence 4566666666554 788875 345555555656654 34567776543 211 111111112456888 23
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy11047 673 FTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 673 ~~~tt~edId~ll~~I~~~~~~ 694 (943)
+.-..++|.++..+.|.+.++-
T Consensus 405 sRG~~e~df~~v~~fi~~av~i 426 (477)
T KOG2467|consen 405 SRGFGEEDFEKVADFIDRAVKI 426 (477)
T ss_pred ccCccHHHHHHHHHHHHHHHHH
Confidence 4555689999998888877553
|
|
| >KOG0634|consensus | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.78 Score=53.55 Aligned_cols=115 Identities=9% Similarity=-0.077 Sum_probs=76.2
Q ss_pred CcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEEecCCCCCcC
Q psy11047 259 GGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYIESDDKLSLR 337 (943)
Q Consensus 259 ~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~D~~grmD 337 (943)
++.++|+|.|.+...++...-++ .-+|++-+.+-.+-..++. +| +.++.|+.|++| |+
T Consensus 125 wdiiit~G~t~~l~~~l~~~~N~-------------------gd~vlie~~ty~~AL~s~~a~g-v~~ipv~md~~G-i~ 183 (472)
T KOG0634|consen 125 WDIIITNGNTDGLFKVLRTLINR-------------------GDHVLIEEYTYPSALQSMEALG-VKIIPVKMDQDG-ID 183 (472)
T ss_pred ceEEEecCCchHHHHHHHHhhcC-------------------CCceEEecccchHHHHhccccC-ceEEeccccCCC-CC
Confidence 67899999999998887765321 1246665555555555553 66 577777776665 78
Q ss_pred HHHHHHHHHHhhcc--CCCcEEEEEec--CCCcccccccHH---HhhhhccccccccccccccCchHHHHHHcCCCCCcc
Q psy11047 338 GDKLIEAIERDKKK--HLIPFFIFSGL--ALPAFLVVDSYC---CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSV 410 (943)
Q Consensus 338 ~daLe~aI~~d~~k--G~~P~~VVaTa--GTT~tGaIDpL~---eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l 410 (943)
++.|++.+..-... |..-.-|..|. |.+-||.--+++ +|.+ +||+|++
T Consensus 184 pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~--------------------LArKyDf----- 238 (472)
T KOG0634|consen 184 PESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQ--------------------LARKYDF----- 238 (472)
T ss_pred HHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHH--------------------HHHHcCE-----
Confidence 99999988753221 21112344443 777788766654 5566 9999998
Q ss_pred chhhhHHhhhc
Q psy11047 411 RLAQKFEALVL 421 (943)
Q Consensus 411 ~lwLHVDAA~G 421 (943)
.+--|--|.
T Consensus 239 --LIVeDdpYy 247 (472)
T KOG0634|consen 239 --LIVEDDPYY 247 (472)
T ss_pred --EEEecCccc
Confidence 777777764
|
|
| >KOG1360|consensus | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.41 Score=55.22 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEe----ecccCCCcEEEEeecCCCCHH
Q psy11047 604 VRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV----PASLRIQGLGRAQNFTRTTND 679 (943)
Q Consensus 604 ~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s----~t~~~g~~~lR~v~~~~tt~e 679 (943)
.+..+++...|.+. ++-++..| ..||=.++. ...++.++.+.|..+..+|+. ||.-+|.--||+...|+.|++
T Consensus 433 qrnv~~~kq~l~~~-GiPVi~~p-SHIiPv~vg-da~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~ 509 (570)
T KOG1360|consen 433 QRNVKYVKQLLMEL-GIPVIPNP-SHIIPVRVG-DAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQ 509 (570)
T ss_pred HHHHHHHHHHHHHc-CCcccCCC-cceeeeecc-CHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHH
Confidence 34445555555443 55555322 446666664 345688888887777777875 566778888999888888999
Q ss_pred HHHHHHHHHHHHHHH
Q psy11047 680 DITRDWNEIRNTATE 694 (943)
Q Consensus 680 dId~ll~~I~~~~~~ 694 (943)
-++.+++.+..+-.+
T Consensus 510 mm~~lv~~l~~vw~~ 524 (570)
T KOG1360|consen 510 MMNILVNALLDVWNE 524 (570)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998887766544
|
|
| >KOG0257|consensus | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.099 Score=60.39 Aligned_cols=160 Identities=11% Similarity=-0.026 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHHhcc-CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCL-GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEA 282 (943)
Q Consensus 204 ~~silgd~L~~alN~n-~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~ 282 (943)
+|..+.+.+..+..-. ...|.-.-....|-..+...+++++|-... ......+|.|+.+|.+.++++--
T Consensus 45 ~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~-------~~~eVlVT~GA~~ai~~~~~~l~--- 114 (420)
T KOG0257|consen 45 PPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLD-------PDDEVLVTAGANEAISSALLGLL--- 114 (420)
T ss_pred CcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccC-------CcccEEEecCchHHHHHHHHHHc---
Confidence 4556665555443221 112222223455666677777776654321 12368999999999988887531
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEEec--------CCCCCcCHHHHHHHHHHhhccCC
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYIES--------DDKLSLRGDKLIEAIERDKKKHL 353 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~--------D~~grmD~daLe~aI~~d~~kG~ 353 (943)
.+| +-||+. +-.-.|-.-... .|+ ..+.|+. ..++.+|.+.|+.++.+.
T Consensus 115 -------~~G--------DeVii~-eP~fd~Y~~~~~maG~-tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~k----- 172 (420)
T KOG0257|consen 115 -------NPG--------DEVIVF-EPFFDCYIPQVVMAGG-TPVFVPLKPKEGNVSSSDWTLDPEELESKITEK----- 172 (420)
T ss_pred -------CCC--------CEEEEe-cCcchhhhhHHhhcCC-cceeeccccccccccCccccCChHHHHhhccCC-----
Confidence 233 223332 333333333333 454 3333332 368999999999999986
Q ss_pred CcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 354 IPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 354 ~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+|+.+-..+-+|.+-+ |++|++ +|++||+ |+..|-+|...
T Consensus 173 -Tk~Ii~ntPhNPtGkvfsReeLe~ia~--------------------l~~k~~~-------lvisDevYe~~ 217 (420)
T KOG0257|consen 173 -TKAIILNTPHNPTGKVFSREELERIAE--------------------LCKKHGL-------LVISDEVYEWL 217 (420)
T ss_pred -ccEEEEeCCCCCcCcccCHHHHHHHHH--------------------HHHHCCE-------EEEEhhHhHHH
Confidence 778999999999999977 889999 9999999 99999999765
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.96 Score=53.45 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=36.4
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
...++.+...++|. ++-|. |. .+=+..-.-.|+++|+++++.+++..++..++
T Consensus 395 ~~~~~~~~~~e~Gl-~iRp~---g~-~i~~~PPliit~~eid~l~~~l~~al~~~~~~ 447 (449)
T COG0161 395 VGARVRAAALERGL-LIRPL---GD-VIYLMPPLIITREEIDELVDALREALDETLAD 447 (449)
T ss_pred HHHHHHHHHHHCCe-EEeec---CC-EEEEcCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 35677777888885 44432 22 33334444579999999999999998877654
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.12 Score=62.25 Aligned_cols=164 Identities=5% Similarity=-0.104 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhccCccccCChhHHHHHHHHHH-HHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINCLGFTWASSPACTELEIITMN-WLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 205 ~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~-wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
|..+-++...... ..|...+..-++=+.+.+ ++.+-.+..... ......++|.|||+|...++.+-....+
T Consensus 115 ~~~v~e~~~~~~~---~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~-----~~~~~I~vT~Ga~~al~~~~~aL~~~~l 186 (527)
T PRK09275 115 DEFVYELVDGIIG---DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPP-----KGEFDLFAVEGGTAAMCYIFDSLKENGL 186 (527)
T ss_pred CHHHHHHHHHHhc---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCC-----CCcCeEEEeCCHHHHHHHHHHHHhhhhc
Confidence 4555565544432 235555555444444444 555543321110 0012588999999998877664211111
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH-C-CccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEE
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI-G-LVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIF 359 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L-G-~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VV 359 (943)
-.|| + .|++.+-........+.+ | ...++.++.+ +.+++|.++|+++++.. +.+++
T Consensus 187 -----l~pG--------D-~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~------tkai~ 246 (527)
T PRK09275 187 -----LKAG--------D-KIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPS------IKALF 246 (527)
T ss_pred -----CCCC--------C-EEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCC------CCEEE
Confidence 0233 2 244444454445555544 3 3355666654 35789999999876543 55677
Q ss_pred EecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 360 SGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 360 aTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+-.++-+|.+-+ +++|++ +|++ +++ |+-.|-+|+-+
T Consensus 247 l~nP~NPTG~v~s~e~l~~I~~--------------------ia~~~~~~l-------~II~DEvY~~f 288 (527)
T PRK09275 247 LVNPSNPPSVAMSDESLEKIAD--------------------IVNEKRPDL-------MIITDDVYGTF 288 (527)
T ss_pred EeCCcCCcCCCCCHHHHHHHHH--------------------HHHhcCCCc-------EEEECCCChhh
Confidence 7778899999866 666777 8865 488 99999999865
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.52 E-value=2.1 Score=48.27 Aligned_cols=160 Identities=11% Similarity=-0.085 Sum_probs=87.1
Q ss_pred HHHHHHHHHH-HhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDA-INCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284 (943)
Q Consensus 206 silgd~L~~a-lN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~ 284 (943)
...++|+++. +-.+...|+.+-.-+.+-..+..++.+-+||.-.. ....+|.|+.-+-++..-. +.
T Consensus 52 ~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~--------~NIalTnGSQs~fFYlfNl-----F~ 118 (417)
T COG3977 52 DLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITA--------QNIALTNGSQSAFFYLFNL-----FA 118 (417)
T ss_pred HHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCcc--------ceeeecCCccchHHHHHHH-----hc
Confidence 3556666654 33344556655455556667778888888997431 2467788777666554321 11
Q ss_pred hhcccCCCchhhhcCCceEEEecCCCchHH-HHHHHHCCccEE----EEecCC----CCCcCHHHHHHHHHHhhccCCCc
Q psy11047 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSV-EKAGLIGLVNMR----YIESDD----KLSLRGDKLIEAIERDKKKHLIP 355 (943)
Q Consensus 285 ~~~~~~pGl~~~~i~~~~vV~~S~~aHySv-~KAa~LG~~~v~----~Vp~D~----~grmD~daLe~aI~~d~~kG~~P 355 (943)
... ..| . .+ .|+.+-.-.|-= ..++.- ...++ .|+.++ ..++|-++|.- .+ .+
T Consensus 119 G~~--sdG-----~-~k-~illPLaPeYiGY~d~~l~-~d~fVs~kP~iel~~~g~FKY~vDF~~l~i--~e------~~ 180 (417)
T COG3977 119 GRR--SDG-----T-EK-KILLPLAPEYIGYADAGLE-EDLFVSAKPNIELLPAGQFKYHVDFEHLHI--GE------ST 180 (417)
T ss_pred Ccc--CCC-----c-ce-eEeeccChhhccccccccC-ccceeeccCCcccccccceeeccCHHHccc--cc------cc
Confidence 110 011 0 01 122221111110 011110 01111 112222 34677777652 22 26
Q ss_pred EEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 356 FFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 356 ~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-+||++-.|+-||.|-- +..+.+ +|++||+ .+.+|-|||-.
T Consensus 181 g~ic~SRPtNPTGNVlTdeE~~klda--------------------lA~~~gi-------PliIDnAYg~P 224 (417)
T COG3977 181 GAICVSRPTNPTGNVLTDEELAKLDA--------------------LARQHGI-------PLIIDNAYGVP 224 (417)
T ss_pred ceEEecCCCCCCCCcccHHHHHHHHH--------------------HhhhcCC-------cEEEecccCCC
Confidence 68999999999998844 445555 9999999 99999999864
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.013 Score=69.57 Aligned_cols=84 Identities=30% Similarity=0.452 Sum_probs=63.1
Q ss_pred ccccccccccccCchH-----HHHHHcCCCC------CccchhhhHHhhhcCCCccccccccccceeeeeecc-------
Q psy11047 382 VKGLGFYKMKLQTNFP-----NFILSYFPKF------QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLG------- 443 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR-----~iar~~Gl~~------~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~------- 443 (943)
..|+.+|+++++|||| +..+.+|.++ +++++.-++-......+.|+++.++.+++||||+..
T Consensus 347 ~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~ 426 (490)
T PLN02880 347 VVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDN 426 (490)
T ss_pred CCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhh
Confidence 4688999999999999 2356778765 334444444344444456899999999999999863
Q ss_pred hhhhHHHHHHHhhccCcccccc
Q psy11047 444 ENILTEKLLKRLNSKGRLHCVP 465 (943)
Q Consensus 444 ~ne~n~kll~~l~~~G~~~~p~ 465 (943)
.|++|++++++++++|++++..
T Consensus 427 ~~~~n~~l~~~l~~~g~~~v~~ 448 (490)
T PLN02880 427 GNKLNHDLLDAVNSSGKIFISH 448 (490)
T ss_pred HHHHHHHHHHHHHhCCCEEEEE
Confidence 2788999999999999887654
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.26 Score=56.24 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=55.4
Q ss_pred cCCCchHHHHHHH--HCCccEEEE----------ecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccc---ccc
Q psy11047 307 SDQAHSSVEKAGL--IGLVNMRYI----------ESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFL---VVD 371 (943)
Q Consensus 307 S~~aHySv~KAa~--LG~~~v~~V----------p~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tG---aID 371 (943)
....|+-.-++-. .|. -.+-+ ..+-.|-+|++.|++.|++-.... .|.++...-.++..| +++
T Consensus 129 ~sN~~FdTTr~h~~~ng~-~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~n-vp~I~~tiT~NsagGQpVSm~ 206 (471)
T COG3033 129 FSNYHFDTTRGHIQINGA-TPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADN-VPYIVLTITNNSAGGQPVSMA 206 (471)
T ss_pred cccceecchhHHHHhcCC-ccccccccccccccccCCCCCccCHHHHHHHHHHhCccc-CcEEEEEEeccccCCCcchHH
Confidence 3457776666652 233 22222 223478899999999999865443 344433333333334 567
Q ss_pred cHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhh
Q psy11047 372 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 420 (943)
Q Consensus 372 pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~ 420 (943)
+++++.+ +|++|++ .+-+|+|-
T Consensus 207 n~r~v~~--------------------ia~ky~i-------pvv~Da~R 228 (471)
T COG3033 207 NMKAVYE--------------------IAKKYDI-------PVVMDAAR 228 (471)
T ss_pred hHHHHHH--------------------HHHHcCC-------cEEeehhh
Confidence 7888888 9999999 99999994
|
|
| >KOG0258|consensus | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.23 Score=57.11 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=97.3
Q ss_pred CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHH--HHHHHHHHHHhhcccCCCchhhh
Q psy11047 220 GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLIC--LLAGRTEAIRKYQQSHPELEHAE 297 (943)
Q Consensus 220 ~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~A--L~aAR~~~l~~~~~~~pGl~~~~ 297 (943)
.+.|..|-....+-+.|.+.+-+-=|.|.. ..+.++|+|+|.|...- |+.+.. ..|
T Consensus 106 ~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~--------p~dI~LT~GAS~ai~~il~l~~~~~---------~~G----- 163 (475)
T KOG0258|consen 106 LGAYSDSQGVPGVRKHVAEFIERRDGIPAD--------PEDIFLTTGASPAIRSILSLLIAGK---------KTG----- 163 (475)
T ss_pred ccccccccCChhHHHHHHHHHHhccCCCCC--------HHHeeecCCCcHHHHHHHHHHhcCC---------CCc-----
Confidence 345555655555555565555555576544 25789999999995443 333220 112
Q ss_pred cCCceEEEecCCCchHHHHHH--HHCCccE-EEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc---
Q psy11047 298 INSRLVAYCSDQAHSSVEKAG--LIGLVNM-RYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD--- 371 (943)
Q Consensus 298 i~~~~vV~~S~~aHySv~KAa--~LG~~~v-~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID--- 371 (943)
..|-+++ |-..-|- .+|+..| .++.-..+|.+|.++|++++++.. +|..|.++|..-..+.||.+-
T Consensus 164 ----vliPiPQ---YPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e 235 (475)
T KOG0258|consen 164 ----VLIPIPQ---YPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEE 235 (475)
T ss_pred ----eEeecCC---CchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHH
Confidence 1222333 3333443 3565444 455666799999999999999887 888888877777778888874
Q ss_pred cHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 372 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 372 pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+++|.. +|.++|+ .+-.|-.|--.
T Consensus 236 ~ie~i~~--------------------fa~~~~l-------~llaDEVYQ~N 260 (475)
T KOG0258|consen 236 NIEGIIC--------------------FAAEEGL-------VLLADEVYQDN 260 (475)
T ss_pred HHHHHHH--------------------HHHHcCe-------EEechHHHHhh
Confidence 4777777 8999999 88888887543
|
|
| >KOG3843|consensus | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.78 Score=50.58 Aligned_cols=292 Identities=14% Similarity=0.148 Sum_probs=153.5
Q ss_pred ceEEEecCCCchHHHHHHH-HCCccEEEEec--CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccc---cccHH
Q psy11047 301 RLVAYCSDQAHSSVEKAGL-IGLVNMRYIES--DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLV---VDSYC 374 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGa---IDpL~ 374 (943)
+.+|.. ....-|-.|... -|...++.=++ .+..+-|+++.+..|++.. +-++.+.+-||.+-+ -|.++
T Consensus 104 kyiiw~-ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~~iee~g-----~dcilci~sttscfapr~pd~le 177 (432)
T KOG3843|consen 104 KYIIWL-RIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEAIIEELG-----EDCILCIHSTTSCFAPRSPDNLE 177 (432)
T ss_pred cEEEEE-ecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHHHHHHhC-----CceEEEEeecccccCCCCCchHH
Confidence 344443 334444455553 45543333333 2344668888888887753 445555566666543 48899
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHH
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKR 454 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~ 454 (943)
+|+. +|..|++ .-.|.-|||-- +++-.-.
T Consensus 178 aiaa--------------------ica~~di-------phivnnayglq------------------------see~i~~ 206 (432)
T KOG3843|consen 178 AIAA--------------------ICAAHDI-------PHIVNNAYGLQ------------------------SEECIHK 206 (432)
T ss_pred HHHH--------------------HHHccCc-------hhhhccccccc------------------------hHHHHHH
Confidence 9999 9999999 78888899754 1111100
Q ss_pred hhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCC--cchHH
Q psy11047 455 LNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR--FRALK 532 (943)
Q Consensus 455 l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr--frALk 532 (943)
+. .-..+.++|.+.-+.-|-+.++-+..+..+|+.+ ++..- . ...+ +|. .-++-
T Consensus 207 ia------------a~~~~grida~vqsldknf~vpvggaiia~fk~n--~iq~i------a---k~yp-grasa~ps~d 262 (432)
T KOG3843|consen 207 IA------------AAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDN--FIQEI------A---KMYP-GRASASPSLD 262 (432)
T ss_pred HH------------HHhhhccHHHHHHHhhhcceeecchhHhhHhHHH--HHHHH------H---HhCC-CccccCccHH
Confidence 00 0112345676666777877777776665555432 22210 0 0001 121 12466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHH
Q psy11047 533 LWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEA 612 (943)
Q Consensus 533 lW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~ 612 (943)
+..++-++|..+|.+...+--+ +|.|+.. +.+.+|+..-+
T Consensus 263 llitll~~gqn~f~e~~~eqke---------------------------------------mf~~l~~-ki~~~ae~~~e 302 (432)
T KOG3843|consen 263 LLITLLSLGQNAFKELFGEQKE---------------------------------------MFLKLRN-KIIKFAEAIGE 302 (432)
T ss_pred HHHHHHHhchhHHHHHHHHHHH---------------------------------------HHHHHHH-HHHHHHHHhhh
Confidence 7789999999999988877211 0111110 01333444433
Q ss_pred HHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHH-HhccCc---EEEe----ecccCC--------------CcEEEE
Q psy11047 613 LVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKR-LNSKGR---LHCV----PASLRI--------------QGLGRA 670 (943)
Q Consensus 613 ~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~-L~~~G~---~~~s----~t~~~g--------------~~~lR~ 670 (943)
.|.+.|.=+| .+.|..=.++...+-...++.. |-.+|. -.+. .+...| -+++-+
T Consensus 303 ~l~~~p~n~i----s~amtl~ti~~~k~kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~e~~~~yln~ 378 (432)
T KOG3843|consen 303 CLLETPENEI----SLAMTLKTIDEAKDKAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTNEQHCAYLNA 378 (432)
T ss_pred hhhcCCCchh----hhhhhhccCChHHhhHHHHHHHHHHhccccCceEeeccccceeeeceEEeccccccCcCchhHhhH
Confidence 3333333222 1111111121111111233322 223321 1111 011111 124444
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccc
Q psy11047 671 QNFTRTTNDDITRDWNEIRNTATEILAELAEETQRVQVTKRTRVPLKE 718 (943)
Q Consensus 671 v~~~~tt~edId~ll~~I~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 718 (943)
.+..-.+..|++.++..+.+....+.+++++++.++-...+ ++|..|
T Consensus 379 a~aigm~~hdld~~~~rl~~~~a~~~ke~akedd~~~~~~~-~i~i~e 425 (432)
T KOG3843|consen 379 ACAIGMKDHDLDEFFNRLDRCLAAFRKELAKEDDDINDKGE-DIDIEE 425 (432)
T ss_pred HHhcCCcHhHHHHHHHHHHHHHHHHHHHHhhcccccccccc-cCCHHH
Confidence 55666788999999999999999999999988887754433 355544
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.1 Score=51.99 Aligned_cols=91 Identities=16% Similarity=0.071 Sum_probs=66.5
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEec-C-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIES-D-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLG 377 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~-D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa 377 (943)
.|++.+-++......+.+-+.+++.+|. + +++.+|++.+++.+.... ..+.+++.+...+-||.+-+ +++|.
T Consensus 144 ~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~---~~~~~i~~~~P~NPTG~v~s~e~l~~i~ 220 (423)
T PLN02397 144 TIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAP---DGSFVLLHACAHNPTGVDPTPEQWEQIS 220 (423)
T ss_pred EEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence 3666666666666666554457788876 2 357899999998886431 12567777778889998855 56667
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|++||+ |+..|-+|...
T Consensus 221 ~--------------------~a~~~~~-------~vI~De~Y~~l 239 (423)
T PLN02397 221 D--------------------LIKSKNH-------LPFFDSAYQGF 239 (423)
T ss_pred H--------------------HHHhCCc-------EEEEecccCCc
Confidence 7 8999999 99999999876
|
|
| >KOG1404|consensus | Back alignment and domain information |
|---|
Probab=93.38 E-value=2.8 Score=48.66 Aligned_cols=47 Identities=11% Similarity=-0.063 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHH
Q psy11047 640 ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEI 688 (943)
Q Consensus 640 ~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I 688 (943)
.....+-+.+.+.|. .|..-.+.|. ++|+..-...|.+||+.+++..
T Consensus 386 ~~~~~i~~~cke~Gv-lvg~g~i~G~-vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 386 AEGAVIGEQCKELGV-LVGKGGIHGN-VFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred HHHHHHHHHHHHhCe-eeecccccce-EEEecCCeeccHHHHHHHHHHH
Confidence 345566677778785 3444445565 8999888889999997776654
|
|
| >KOG3846|consensus | Back alignment and domain information |
|---|
Probab=93.03 E-value=7.1 Score=44.26 Aligned_cols=119 Identities=16% Similarity=0.118 Sum_probs=73.5
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
-++.-++.++|..+. -+-...+--+|+-.|+..-.+ ....+++=+ -.-..|- ..||++
T Consensus 115 ~il~l~~~iVGA~e~-----------EvavmNsLTvNlh~Ll~sFyK---PTekR~KIL------lE~kaFP--SDhYAi 172 (465)
T KOG3846|consen 115 PILPLLAPIVGAQEN-----------EVAVMNSLTVNLHSLLISFYK---PTEKRFKIL------LEKKAFP--SDHYAI 172 (465)
T ss_pred hhhhhhhhhccCCch-----------hhhhHhhhhhHHHHHHHHhcC---Ccchhhhhh------hccCCCC--chHHHH
Confidence 466677888888654 233445555677776654211 100011101 0011333 369999
Q ss_pred HHHHHH-CC---ccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 315 EKAGLI-GL---VNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 315 ~KAa~L-G~---~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
+.-+.| |. ..++.|.+. ....++.+++-+.|+.+ |....+|+.+---..||-.-++..|..
T Consensus 173 esQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkn---gDeiA~v~fSGvqyYTGQ~Fdi~aIT~ 238 (465)
T KOG3846|consen 173 ESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKN---GDEIALVCFSGVQYYTGQYFDIGAITF 238 (465)
T ss_pred HhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhc---CCeEEEEEeecceeecccccchhhhhh
Confidence 998876 43 246777654 46688999999999876 444666666666677898888888887
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.17 Score=60.76 Aligned_cols=85 Identities=22% Similarity=0.193 Sum_probs=61.7
Q ss_pred ccccccccccccCchH-----HHHHHcCCCC------CccchhhhHHhhhcCCCccccccccccceeeeeecc-------
Q psy11047 382 VKGLGFYKMKLQTNFP-----NFILSYFPKF------QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLG------- 443 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR-----~iar~~Gl~~------~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~------- 443 (943)
..|+++|+++.+|+++ ...+.+|.+| +.+++.-++-.-....+.|+|..++.+++||||+..
T Consensus 367 ~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l 446 (522)
T TIGR03799 367 SKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQAL 446 (522)
T ss_pred CCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhcccc
Confidence 4678899999999999 2334455544 334445555444545557899999999999999741
Q ss_pred --------------hhhhHHHHHHHhhccCcccccch
Q psy11047 444 --------------ENILTEKLLKRLNSKGRLHCVPA 466 (943)
Q Consensus 444 --------------~ne~n~kll~~l~~~G~~~~p~~ 466 (943)
.|++|+++.++++++|++++..+
T Consensus 447 ~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t 483 (522)
T TIGR03799 447 AKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRT 483 (522)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 26778899999999999977654
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >KOG1401|consensus | Back alignment and domain information |
|---|
Probab=90.84 E-value=30 Score=40.79 Aligned_cols=119 Identities=17% Similarity=0.050 Sum_probs=68.3
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH------HCC--c----cEEE
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL------IGL--V----NMRY 327 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~------LG~--~----~v~~ 327 (943)
...|+.+|||||..||..||.....+ ++. ..-+ +|..-..-|=-..-|+. .+. + .+..
T Consensus 118 rvff~nsGTeAne~ALK~Ark~~~~~----~~~-----~~t~-~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~ 187 (433)
T KOG1401|consen 118 RVFFCNSGTEANETALKFARKFTGKK----HPE-----KKTK-FIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVT 187 (433)
T ss_pred EEEEecCCcHHHHHHHHHHHHhhccc----CCc-----ccee-EEEEecCcCCcchhHHHhhcccccCCCCCCCCCceee
Confidence 57899999999999999999754321 111 0012 33333444422222221 121 1 2333
Q ss_pred EecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc--cc--HHHhhhhccccccccccccccCchHHHHHHc
Q psy11047 328 IESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV--DS--YCCLGTAMIVKGLGFYKMKLQTNFPNFILSY 403 (943)
Q Consensus 328 Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI--Dp--L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~ 403 (943)
.+.+ |..+|++.++.. +|. ...|+.--+.-.-|.+ || +..+.. .|+++
T Consensus 188 ~~yn-----d~t~l~k~~~~h--~~~-IaAVIvEPiqGaGG~~p~~peFl~~L~k--------------------~C~~~ 239 (433)
T KOG1401|consen 188 AEYN-----DSTALEKLFESH--KGE-IAAVIVEPIQGAGGIIPADPEFLIGLRK--------------------ECDDN 239 (433)
T ss_pred cccC-----CHHHHHHHHHhC--CCc-eEEEEEecccCCCCcccCCHHHHHHHHH--------------------HHhhc
Confidence 3332 488999988864 332 3344444444333333 55 555555 99999
Q ss_pred CCCCCccchhhhHHhhhcCC
Q psy11047 404 FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 404 Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|+ .+..|--+-|+
T Consensus 240 ~v-------l~I~DEV~tG~ 252 (433)
T KOG1401|consen 240 GV-------LLIFDEVQTGL 252 (433)
T ss_pred Cc-------eEEeehhhhCc
Confidence 99 89999888775
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.41 E-value=3.1 Score=48.43 Aligned_cols=79 Identities=6% Similarity=-0.222 Sum_probs=58.1
Q ss_pred CCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCC--CcccccccHHHhhhhccccccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLAL--PAFLVVDSYCCLGTAMIVKGLG 386 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGT--T~tGaIDpL~eIa~~~~~~d~~ 386 (943)
-.|+++...+.+++..++.+ ...++-...+++.+|.++. .++.-++.. ..+|. -+++++.+
T Consensus 119 gg~~~v~d~~~~aG~~l~Ev--G~tn~t~~~d~~~AIne~t------a~llkV~s~~~~f~~~-l~~~~l~~-------- 181 (395)
T COG1921 119 GGAFRVPDIIRLAGAKLVEV--GTTNRTHLKDYELAINENT------ALLLKVHSSNYGFTGM-LSEEELVE-------- 181 (395)
T ss_pred CCCCChhHHHHHcCCEEEEe--cccCcCCHHHHHHHhccCC------eeEEEEeecccccccc-ccHHHHHH--------
Confidence 58999999998877665555 4567788999999999874 344444433 23333 34777888
Q ss_pred cccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 387 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 387 ~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ .+.+|+|-|.-
T Consensus 182 ------------ia~~~~l-------pvivD~aSg~~ 199 (395)
T COG1921 182 ------------IAHEKGL-------PVIVDLASGAL 199 (395)
T ss_pred ------------HHHHcCC-------CEEEecCCccc
Confidence 9999999 99999998753
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=90.17 E-value=67 Score=41.28 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=34.5
Q ss_pred HHHHHHHHh-ccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLN-SKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 642 ~~~Ll~~L~-~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
...+.+++. ++|. ++.+. + .++|+.+.+.+++++++++++.|.+.
T Consensus 770 a~~v~~~~~~~~Gl-~~r~~---G-nvi~l~pP~~i~~e~l~~~~~~l~~~ 815 (817)
T PLN02974 770 ARSVVRRLRREDGI-YARPL---G-NVVYLMCGPTTSPETCTRLLRKVYRR 815 (817)
T ss_pred HHHHHHHHHHhCCE-EEEec---C-CEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 456777777 7775 44432 3 58999999999999999999988764
|
|
| >KOG1358|consensus | Back alignment and domain information |
|---|
Probab=90.11 E-value=12 Score=43.82 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=60.2
Q ss_pred HHHHHHHhCCCCeEEecCCCccEEEEEecCCC---h----HHHHHHHHHhccCcEEEeeccc------CCCcEEEEeecC
Q psy11047 608 QKFEALVLGDPRFEIPAARHLGMVVIRLLGEN---I----LTEKLLKRLNSKGRLHCVPASL------RIQGLGRAQNFT 674 (943)
Q Consensus 608 ~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n---~----l~~~Ll~~L~~~G~~~~s~t~~------~g~~~lR~v~~~ 674 (943)
..+.+.++...++++-..+...++-.++.+.. + +-+++.++...+|.+......+ .-+..+|+.++.
T Consensus 366 ~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~~~a 445 (467)
T KOG1358|consen 366 AKFHAALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRICVSA 445 (467)
T ss_pred cccchhhhcCCceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEEEeC
Confidence 34455566677899999999999988887621 1 2334444433345443332222 224579999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q psy11047 675 RTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 675 ~tt~edId~ll~~I~~~~~~l 695 (943)
..++++|+++.+.|++.+..+
T Consensus 446 ~~seeel~ra~~~ik~~~~~~ 466 (467)
T KOG1358|consen 446 GMSEEELERAAELIKEVASAV 466 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999987654
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=86.82 E-value=11 Score=42.64 Aligned_cols=142 Identities=10% Similarity=-0.083 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
..+..++|.++++-+. ....|+.+|||||-.||..||.+.-.... ++ .+.++-+...-|-
T Consensus 61 ~~~la~~L~~~~p~~~----------~~v~f~~sGseAve~Alkla~~~~~~~~~---~~-------r~~il~~~~~yHG 120 (339)
T PF00202_consen 61 AAELAEKLAELFPGGL----------DRVFFANSGSEAVEAALKLARQYHNKRAY---TG-------RRKILAFEGSYHG 120 (339)
T ss_dssp HHHHHHHHHHHSSTTE----------EEEEEESSHHHHHHHHHHHHHHHHHHTHH---HT-------TTEEEEETTTB-T
T ss_pred hhhhhhhhhhcccccc----------ceeeeccCchHHHHHHHHHhhcccccccc---cC-------CceEEEeeeeeec
Confidence 3356667778873222 25789999999999999999943211110 01 2234444555554
Q ss_pred HHHHHHHHC------------CccEEEEecCCCCC-----cCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---
Q psy11047 313 SVEKAGLIG------------LVNMRYIESDDKLS-----LRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS--- 372 (943)
Q Consensus 313 Sv~KAa~LG------------~~~v~~Vp~D~~gr-----mD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp--- 372 (943)
...-+..++ ...+..+|.++... -....+++.+.+.... ...+++.--.....|.+-|
T Consensus 121 ~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~iaavivEPi~g~~G~~~~~~~ 198 (339)
T PF00202_consen 121 RTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNAD--EIAAVIVEPIQGEGGMIPPPPE 198 (339)
T ss_dssp SSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGG--GEEEEEEESSBTTTTSBEE-TT
T ss_pred cCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCC--cEEEEEEeccccccCccccccc
Confidence 333333211 12467777754222 0122233333332221 1344444333334454432
Q ss_pred -HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 -YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 -L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++++.+ +|++||+ .+-+|=-+.|+
T Consensus 199 ~l~~l~~--------------------lc~~~gi-------llI~DEV~tG~ 223 (339)
T PF00202_consen 199 YLRELRE--------------------LCREHGI-------LLIADEVQTGF 223 (339)
T ss_dssp HHHHHHH--------------------HHHHTT--------EEEEEETTTTT
T ss_pred hhhehcc--------------------ccccccc-------ceecccccccc
Confidence 667777 9999999 99999888776
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >KOG1402|consensus | Back alignment and domain information |
|---|
Probab=86.38 E-value=50 Score=38.16 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=40.0
Q ss_pred CccEEEEEecCCC-hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 627 HLGMVVIRLLGEN-ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 627 ~l~iV~Fr~~g~n-~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
-++.+.|.....+ .-.-.++-+|..+|.+ --|| .+ ..+||..---.+++|+++-+++|++..
T Consensus 363 l~~ai~i~~~~~~~~~aw~~cl~lk~~g~L-Akpt--H~-~IiRfaPPL~I~e~dl~eg~e~i~k~i 425 (427)
T KOG1402|consen 363 LLNAIVINPSKTSGQDAWDVCLALKENGLL-AKPT--HG-NIIRFAPPLVISEEDLREGIEAIEKTI 425 (427)
T ss_pred eEEEEEeccccccchhHHHHHHcccccccc-cCCC--CC-CeEEecCCcccCHHHHHHHHHHHHHHh
Confidence 3555666644333 2234556667777753 2222 23 389998877889999999999998764
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=83.99 E-value=0.42 Score=55.00 Aligned_cols=61 Identities=23% Similarity=0.298 Sum_probs=46.3
Q ss_pred ccccccccccccCchH-----HHHHHcCCCC------CccchhhhHHhhhcCCCccccccccccceeeeeec
Q psy11047 382 VKGLGFYKMKLQTNFP-----NFILSYFPKF------QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLL 442 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR-----~iar~~Gl~~------~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~ 442 (943)
..|+++++++.+|+++ ...+.+|.+| +.+++.-++-......+.|+|++++.++.|||||+
T Consensus 302 ~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcFr~k 373 (373)
T PF00282_consen 302 SYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCFRYK 373 (373)
T ss_dssp GGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEEEES
T ss_pred ccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEEEeC
Confidence 3578999999999999 4456677765 44555555555566666789999999999999985
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >KOG2790|consensus | Back alignment and domain information |
|---|
Probab=81.33 E-value=92 Score=35.49 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhCCCCeEEec-CC---CccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHH
Q psy11047 605 RLAQKFEALVLGDPRFEIPA-AR---HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDD 680 (943)
Q Consensus 605 ~LA~~l~~~L~~~p~~eIl~-~~---~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~ed 680 (943)
+-++.+++.|.+..+|-.+. ++ ...-|+||+. .+++-.++++.-.+++. +.-..++..+-+|+++.-..+-++
T Consensus 278 ~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~-~d~Le~eFLkeA~~~~m--v~LKGhRSVGGiRASlYNAisv~~ 354 (370)
T KOG2790|consen 278 EKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIE-KDELEAEFLKEAAKEHM--VQLKGHRSVGGIRASLYNAISVEE 354 (370)
T ss_pred HHHHHHHHHHHhcCCeEEcccchhhhhhcccceeec-chHHHHHHHHHHHHhhh--hccccccccccchhhhhccccHHH
Confidence 44566777777776766553 22 2334789997 45666666665554442 222234555679998888899999
Q ss_pred HHHHHHHHHHHHH
Q psy11047 681 ITRDWNEIRNTAT 693 (943)
Q Consensus 681 Id~ll~~I~~~~~ 693 (943)
++++++.|++..+
T Consensus 355 ~q~L~~~m~~F~k 367 (370)
T KOG2790|consen 355 VQKLAAFMKEFQK 367 (370)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 943 | ||||
| 3rbf_A | 480 | Crystal Structure Of Human Aromatic L-Amino Acid De | 1e-108 | ||
| 3rch_A | 480 | Crystal Structure Of Human Aromatic L-Amino Acid De | 1e-108 | ||
| 1js3_A | 486 | Crystal Structure Of Dopa Decarboxylase In Complex | 1e-105 | ||
| 3k40_A | 475 | Crystal Structure Of Drosophila 3,4-Dihydroxyphenyl | 1e-100 | ||
| 4e1o_A | 481 | Human Histidine Decarboxylase Complex With Histidin | 1e-92 | ||
| 4e1o_A | 481 | Human Histidine Decarboxylase Complex With Histidin | 5e-40 | ||
| 2okk_A | 497 | The X-Ray Crystal Structure Of The 65kda Isoform Of | 3e-04 | ||
| 2okj_A | 504 | The X-Ray Crystal Structure Of The 67kda Isoform Of | 6e-04 | ||
| 3vp6_A | 511 | Structural Characterization Of Glutamic Acid Decarb | 7e-04 |
| >pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480 | Back alignment and structure |
|
| >pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480 | Back alignment and structure |
|
| >pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With The Inhibitor Carbidopa Length = 486 | Back alignment and structure |
|
| >pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine Decarboxylase Length = 475 | Back alignment and structure |
|
| >pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481 | Back alignment and structure |
|
| >pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481 | Back alignment and structure |
|
| >pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of Glutamic Acid Decarboxylase (Gad65) Length = 497 | Back alignment and structure |
|
| >pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of Glutamic Acid Decarboxylase (Gad67) Length = 504 | Back alignment and structure |
|
| >pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid Decarboxylase; Insights Into The Mechanism Of Autoinactivation Length = 511 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 943 | |||
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 1e-99 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 5e-47 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 7e-13 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 2e-97 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 3e-44 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 9e-13 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 2e-93 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 2e-47 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 5e-13 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 6e-87 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 1e-33 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 1e-04 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 4e-84 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 2e-37 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 3e-10 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 4e-83 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 8e-33 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 7e-06 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 2e-13 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 3e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 2e-07 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 3e-06 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 6e-06 |
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 319 bits (820), Expect = 1e-99
Identities = 150/231 (64%), Positives = 186/231 (80%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
G+EMVDYI YL +R+RRV PDV+PGYLR+ +PESAP +P+ WD+I GDIE++IMPG+
Sbjct: 15 GREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVV 74
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAY+PAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 75 HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLP 134
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FLH S GGGVLQ+T SESTLI LLA R I + + S P+ + + +N+RLVAY S
Sbjct: 135 EHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYAS 194
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358
DQAHSSVEKAGLI LV M+++ DD SLRG+ L +AIE DK++ L+P F+
Sbjct: 195 DQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFV 245
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 5e-47
Identities = 93/245 (37%), Positives = 125/245 (51%), Gaps = 71/245 (28%)
Query: 469 RIQGLGRAQNFTIVP---------SSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMH 519
++G+ A +FT P + VK+ L +TF+V P+YLRH NSG+A D+MH
Sbjct: 293 FLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMH 352
Query: 520 WQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGL 579
WQIPLS+RFR++KLWFVIR+FG+K LQ H+R
Sbjct: 353 WQIPLSRRFRSVKLWFVIRSFGVKNLQAHVR----------------------------- 383
Query: 580 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGEN 639
+A+ FE+LV DP FEIPA RHLG+VV RL G N
Sbjct: 384 ----------------------HGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPN 421
Query: 640 ILTEKLLKRLNSKGRLHCVPASLRIQGLGR------AQNFTRTTNDDITRDWNEIRNTAT 693
LTE +LK + GRL +PA+++ + + TT DDI RDWN IR+ AT
Sbjct: 422 SLTENVLKEIAKAGRLFLIPATIQ----DKLIIRFTVTSQ-FTTRDDILRDWNLIRDAAT 476
Query: 694 EILAE 698
IL++
Sbjct: 477 LILSQ 481
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 7e-13
Identities = 32/62 (51%), Positives = 42/62 (67%)
Query: 408 QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467
+A+ FE+LV DP FEIPA RHLG+VV RL G N LTE +LK + GRL +PA+
Sbjct: 384 HGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPAT 443
Query: 468 LR 469
++
Sbjct: 444 IQ 445
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 313 bits (805), Expect = 2e-97
Identities = 136/231 (58%), Positives = 175/231 (75%), Gaps = 1/231 (0%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDY+ADYLE I R+VYPDV+PGYLR L+P +AP EP+ ++ I+ D+EK+IMPG+T
Sbjct: 10 GKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SPY AYFP +SYP++L DML AI C+GF+WA+SPACTELE + M+WLGKM+ LP
Sbjct: 70 HWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FL + GGGV+Q +ASE+TL+ LLA RT+ +R+ Q + P L + +LVAY S
Sbjct: 130 EAFLAGE-AGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYAS 188
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358
DQAHSSVE+AGLIG V ++ I SD K ++R L EA+ERDK LIPFF+
Sbjct: 189 DQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV 239
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 3e-44
Identities = 76/247 (30%), Positives = 109/247 (44%), Gaps = 73/247 (29%)
Query: 469 RIQGLGRAQNFTIVP---------SSLLRVKNSGALHRTFNVEPLYLRHENSG--LAIDY 517
+ G+ A +F P S + VK L F ++P+YL+H + G L DY
Sbjct: 287 LLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDY 346
Query: 518 MHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVK 577
HWQ+PL +RFR+LK+WFV R +G+KGLQ +IR+
Sbjct: 347 RHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHV------------------------ 382
Query: 578 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLG 637
+L+ +FEA VL DPRFE+ A LG+V RL G
Sbjct: 383 ---------------------------QLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKG 415
Query: 638 ENILTEKLLKRLNSKGRLHCVPASLRIQGLGR------AQNFTRTTNDDITRDWNEIRNT 691
+ L E LL+R+NS ++H VP LR G+ + + + + W IR
Sbjct: 416 SDGLNEALLERINSARKIHLVPCRLR----GQFVLRFAICSR-KVESGHVRLAWEHIRGL 470
Query: 692 ATEILAE 698
A E+LA
Sbjct: 471 AAELLAA 477
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 9e-13
Identities = 31/62 (50%), Positives = 42/62 (67%)
Query: 408 QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467
+ V+L+ +FEA VL DPRFE+ A LG+V RL G + L E LL+R+NS ++H VP
Sbjct: 380 KHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCR 439
Query: 468 LR 469
LR
Sbjct: 440 LR 441
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475 | Back alignment and structure |
|---|
Score = 303 bits (777), Expect = 2e-93
Identities = 131/231 (56%), Positives = 174/231 (75%), Gaps = 2/231 (0%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
K MVD+IA+YLENIR+RRV P+VKPGYL+ L+P++AP +PEKW +M DIE+VIMPG+T
Sbjct: 10 AKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SP HAYFP NSYP+++ DMLS AI C+GFTW +SPACTELE++ M+WLGKM+ LP
Sbjct: 70 HWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
EFL GGGV+Q TASESTL+ LL + + +++ ++ HPE + I +LV YCS
Sbjct: 130 AEFLACS-GGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCS 188
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358
DQAHSSVE+AGL+G V +R ++ + +RG L +AIE+D + LIPF+
Sbjct: 189 DQAHSSVERAGLLGGVKLRSVQ-SENHRMRGAALEKAIEQDVAEGLIPFYA 238
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 2e-47
Identities = 75/246 (30%), Positives = 109/246 (44%), Gaps = 73/246 (29%)
Query: 469 RIQGLGRAQNFTIVP---------SSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMH 519
++G+ A +F P S + +K+ + FNV+PLYL+H+ G A DY H
Sbjct: 286 LMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRH 345
Query: 520 WQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGL 579
WQIPL +RFRALKLWFV+R +G++ LQ HIR
Sbjct: 346 WQIPLGRRFRALKLWFVLRLYGVENLQAHIR----------------------------- 376
Query: 580 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGEN 639
+ A++F L + D RFE+ A ++G+V RL G N
Sbjct: 377 ----------------------RHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSN 414
Query: 640 ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTR-------TTNDDITRDWNEIRNTA 692
E LLKR+N +G +H VPA ++ F R T ++D+ W E+ A
Sbjct: 415 ERNEALLKRINGRGHIHLVPAKIK----DV--YFLRMAICSRFTQSEDMEYSWKEVSAAA 468
Query: 693 TEILAE 698
E+ E
Sbjct: 469 DEMEQE 474
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 5e-13
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 408 QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467
+ A++F L + D RFE+ A ++G+V RL G N E LLKR+N +G +H VPA
Sbjct: 377 RHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAK 436
Query: 468 LR 469
++
Sbjct: 437 IK 438
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504 | Back alignment and structure |
|---|
Score = 286 bits (734), Expect = 6e-87
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 22/239 (9%)
Query: 128 GKEMVDYIADYLENIRDR--RVYPDVKPGYLRSLVPE---SAPVEPEKWDTIMGDIEKVI 182
E+VD + +Y+ DR +V P L + PE + I+ D +
Sbjct: 25 LLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTL 84
Query: 183 MPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGK 242
G+ P L G+ L+ N FT+ +P +E IT+ + +
Sbjct: 85 KYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMRE 143
Query: 243 MIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302
++G + G G+ + S + ++A R + + + + +L
Sbjct: 144 IVGWSSKD--------GDGIFSPGGAISNMYSIMAARYKYFPEVKT-----KGMAAVPKL 190
Query: 303 VAYCSDQAHSSVEKAGL---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358
V + S+Q+H S++KAG G N+ I+ +++ + I K+K +PF++
Sbjct: 191 VLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYV 249
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-33
Identities = 36/263 (13%), Positives = 62/263 (23%), Gaps = 91/263 (34%)
Query: 469 RIQGLGRAQNFTIVP---------SSLLRVKNSGALHRTFNVEPLYLRHENS--GLAIDY 517
++ G+ RA + T P S + VK G L + YL + ++ D
Sbjct: 297 KLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDT 356
Query: 518 MHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVK 577
I + K W + + G G + I
Sbjct: 357 GDKAIQCGRHVDIFKFWLMWKAKGTVGFENQIN--------------------------- 389
Query: 578 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI--PAARHLGMVVIRL 635
+ + LA+ A + FE+ V
Sbjct: 390 ------------------------KCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWY 425
Query: 636 LGE---------------NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNF------- 673
+ + + + K+ + G Q G NF
Sbjct: 426 IPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGY-----QPQGDKANFFRMVISN 480
Query: 674 TRTTNDDITRDWNEIRNTATEIL 696
T DI EI ++
Sbjct: 481 PAATQSDIDFLIEEIERLGQDLH 503
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 8/79 (10%), Positives = 19/79 (24%), Gaps = 17/79 (21%)
Query: 408 QSVRLAQKFEALVLGDPRFEI--PAARHLGMVVIRLLGE---------------NILTEK 450
+ + LA+ A + FE+ V + + + + K
Sbjct: 390 KCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPK 449
Query: 451 LLKRLNSKGRLHCVPASLR 469
+ + G
Sbjct: 450 IKALMMESGTTMVGYQPQG 468
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497 | Back alignment and structure |
|---|
Score = 278 bits (714), Expect = 4e-84
Identities = 43/237 (18%), Positives = 91/237 (38%), Gaps = 16/237 (6%)
Query: 127 VGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPE-SAPVEPEKWDTIMGDIEKVIMPG 185
V + E + Y + P L + + +++ D+ +++
Sbjct: 37 VMSHTTSAMKSVFEQVN--APYSGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAKN 94
Query: 186 ITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIG 245
Q P A+ P++ + + A+N +W + + T +E +NWL
Sbjct: 95 AIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYD 154
Query: 246 LPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHP-ELEHAEINSRLVA 304
L E+ G+ + ++S + L+ R K +L + +L
Sbjct: 155 LSEK---------ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRI 205
Query: 305 YCSDQAHSSVEKAGL---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358
CS ++H +V+K+ +G + ++++ ++ KL E I + K + LIPF I
Sbjct: 206 VCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAI 262
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 2e-37
Identities = 37/248 (14%), Positives = 72/248 (29%), Gaps = 79/248 (31%)
Query: 469 RIQGLGRAQNFTI-------VP--SSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMH 519
R++G+ RA + ++ L V + + YL E+ L + +
Sbjct: 309 RLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHDEL-PNLVD 366
Query: 520 WQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGL 579
I +KRF ALK++ ++N G K L
Sbjct: 367 KSIATTKRFDALKVFMTMQNVGPKALGDMYD----------------------------- 397
Query: 580 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE- 638
+ + ++ + +FE+ A L V+ R E
Sbjct: 398 ----------------------HLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHET 435
Query: 639 ---NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTR-------TTNDDITRDWNEI 688
+ L + L ++G + G+ + T D ++I
Sbjct: 436 ADLDELNKALRLEALTRGIAVLGETIVD----GK--TALKFTILNPCLTTSDFESLLSKI 489
Query: 689 RNTATEIL 696
A E++
Sbjct: 490 NMLAVELV 497
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-10
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 408 QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE----NILTEKLLKRLNSKGRLHC 463
+ + ++ + +FE+ A L V+ R E + L + L ++G
Sbjct: 398 HLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVL 457
Query: 464 VPASLR 469
+
Sbjct: 458 GETIVD 463
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515 | Back alignment and structure |
|---|
Score = 276 bits (709), Expect = 4e-83
Identities = 38/235 (16%), Positives = 87/235 (37%), Gaps = 20/235 (8%)
Query: 127 VGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGI 186
V +VD ++ ++V +P L+ L+ + E I+ VI +
Sbjct: 46 VFGVVVDEAIQKGTSVS-QKVCEWKEPEELKQLLDLELRSQGESQKQILERCRAVIRYSV 104
Query: 187 THWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGL 246
P + +L G ++++++N +T+ +P +E + L ++G
Sbjct: 105 KTG-HPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGW 163
Query: 247 PEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306
G G+ S S + + R + +Q L +
Sbjct: 164 SS----------GDGIFCPGGSISNMYAVNLARYQRYPDCKQ-----RGLRTLPPLALFT 208
Query: 307 SDQAHSSVEKAGL---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358
S + H S++K +G ++R +++D++ + + L I + + +PF +
Sbjct: 209 SKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLV 263
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 8e-33
Identities = 36/260 (13%), Positives = 70/260 (26%), Gaps = 88/260 (33%)
Query: 469 RIQGLGRAQNFTI-------VP--SSLLRVKN-SGALHRTFNVEPLYLRHENS--GLAID 516
+ G+ RA + S L +++ S L R + YL ++ +A+D
Sbjct: 311 LLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALD 370
Query: 517 YMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIV 576
+ +R LKLW + + G +GL++ I
Sbjct: 371 TGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRID-------------------------- 404
Query: 577 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLL 636
Q+ LA+ + FE+ V +
Sbjct: 405 -------------------------QAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFV 439
Query: 637 GE---------------NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNF------TR 675
+ + L +R+ +G + R F +
Sbjct: 440 PPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHG----TRGNFFRVVVANSA 495
Query: 676 TTNDDITRDWNEIRNTATEI 695
T D+ NE+ ++
Sbjct: 496 LTCADMDFLLNELERLGQDL 515
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 9/70 (12%), Positives = 20/70 (28%), Gaps = 15/70 (21%)
Query: 408 QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE---------------NILTEKLL 452
Q+ LA+ + FE+ V + + + L
Sbjct: 405 QAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLK 464
Query: 453 KRLNSKGRLH 462
+R+ +G +
Sbjct: 465 ERMVKEGSMM 474
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 2e-13
Identities = 35/233 (15%), Positives = 70/233 (30%), Gaps = 25/233 (10%)
Query: 117 RKIPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMG 176
+I I D D+L ++R + +KP R P I+
Sbjct: 31 CEIRGIQSQP--PARRDPTMDWLASLRSQ-----IKPYRDRFPSHARLPRAGLPRAEILA 83
Query: 177 DIEKVIMPGITHWQSPYMHAYFPALNSYP-SLLGDMLSDAINCLGFTWASSPACTELEII 235
+I + W+ Y + + + L ++ + P+ + E
Sbjct: 84 EIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAE 143
Query: 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEH 295
+ M+G G + + +ES LLA + R + ++ +
Sbjct: 144 VVAMTAHMLGGDAA------GGTVCGTVTSGGTES---LLLAMK--TYRDWARATKGITA 192
Query: 296 AEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERD 348
E AH++ +KA + + D + EAI +
Sbjct: 193 PEA------VVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPN 239
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 34/228 (14%), Positives = 77/228 (33%), Gaps = 33/228 (14%)
Query: 127 VGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVI-MPG 185
+ + + ++I D + D + L P D ++ ++ K+ +
Sbjct: 6 LRGTVEKEVTKVKQSIEDELIRSDSQLMNFPQL-----PSNGIPQDDVIEELNKLNDLIP 60
Query: 186 ITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFT----WASSPACTELEIITMNWLG 241
T W+ + L + + A PA ++E ++ +
Sbjct: 61 HTQWKEGKVSGAVY---HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVL 117
Query: 242 KMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301
+M P + G G + +ES L+ L+ + A+ + PE+
Sbjct: 118 RMFNAPSD--------TGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEI-------- 161
Query: 302 LVAYCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERD 348
AH+ +KA + +R++E D + K+ + I ++
Sbjct: 162 ---IAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 3e-09
Identities = 73/453 (16%), Positives = 139/453 (30%), Gaps = 95/453 (20%)
Query: 6 NEKVLQ--SVQIFKIGKWVEISVLGSPDSKKVVFSQWSVRLH----FNNVNFFVCNNPRQ 59
+ KV +IF W+ + SP++ V+ + + + + N +
Sbjct: 173 SYKVQCKMDFKIF----WLNLKNCNSPET--VLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 60 GN---GGLHRGLPGKYQGPSCL----SRCEAGIFAQFGPGIRTILITLVICLSLGKIFVV 112
+ L R L K +CL + A + F + +L T ++ F+
Sbjct: 227 IHSIQAELRRLLKSK-PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD---FLS 282
Query: 113 NPQSRKIPLIPVI--LVGKEMVDYIADYLENIRD--RRVYPDVKPGYLRSLVPESAPVEP 168
+ I L L E+ + YL+ R P L S++ ES
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGL 341
Query: 169 EKWD---TIMGD-IEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDA---INCLGF 221
WD + D + +I + + F L+ +P A L
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-------PSAHIPTILLSL 394
Query: 222 TWASSPACTELEIITMNWLGK-----------MIGLPEEFLHTKVDSPGGGVLQTTASES 270
W +++ ++ +N L K I +P +L KV L
Sbjct: 395 IWFDVIK-SDVMVV-VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-----HR 447
Query: 271 TLICLLAGRTEAIRKYQQSHPELEHAE--INSRLVAYCSDQAH-SSVEKAGLIGLVNMRY 327
+++ + + + + S + + H ++E + L M +
Sbjct: 448 SIV----DHYNIPKTFDSDDLIPPYLDQYFYSHI-GH-----HLKNIEHPERMTLFRMVF 497
Query: 328 IESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGF 387
L R +E K +H + SG L + Y I
Sbjct: 498 ------LDFR---FLEQ----KIRHDSTAWNASGSILNTLQQLKFY----KPYICDNDPK 540
Query: 388 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 420
Y+ + IL + PK + + K+ L+
Sbjct: 541 YERLVNA-----ILDFLPKIEENLICSKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 3e-05
Identities = 43/291 (14%), Positives = 87/291 (29%), Gaps = 75/291 (25%)
Query: 639 NILT----EKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDW------NEI 688
+IL+ + ++ ++ + +L + Q F I + E
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFLMSPIKTEQ 102
Query: 689 RNTA--TEILAELAEETQR-VQVTKRTRVPLKE--TKGRNAL----------------FG 727
R + T + E + QV + V + K R AL G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 728 SSLLLANSPMSPKIMNGSFAAVF-------DADESIM---NGWTHGIAQIQCDSNDSP-- 775
+ + + +S K+ +F ++ E+++ + I +D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 776 ------SMRRRIRGILMSGKQF--SL-------DSR----MDLISGDNTRTHTTPTSDNS 816
S++ +R +L S K + L +++ +L + + T T
Sbjct: 223 IKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFNL----SCKILLT-TRFKQ 276
Query: 817 DKDKLEEYAEAELSQGQEKTELTNGDPADSQP-YAK-TGVKT-DLKTEANK 864
D L +S LT P + + K + DL E
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLT---PDEVKSLLLKYLDCRPQDLPREVLT 324
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 2e-04
Identities = 62/425 (14%), Positives = 120/425 (28%), Gaps = 126/425 (29%)
Query: 537 IRNFGIKGLQKHIREIFSG------LALP-----AFLVVDSYCCLGTAMIVKGLGFYKMK 585
+ NF K +Q + I S + + + M+ K F +
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK---FVEEV 86
Query: 586 LQTNFPNFILSYF------PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGEN 639
L+ N+ F++S P + ++ + L + F A + V RL
Sbjct: 87 LRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF---AKYN----VSRLQPYL 138
Query: 640 ILTEKLLKRLNSKGR--LH----CVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRN--T 691
L + LL+ L + + + + + I W ++N +
Sbjct: 139 KLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVC-LSYKVQCKMDFKIF--WLNLKNCNS 194
Query: 692 ATEILAEL--------AEETQRVQVTKRTRVPLKETKGR-NALFGS-----SLL-LANSP 736
+L L T R + ++ + + L S LL L N
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-- 252
Query: 737 MSPKIMNGSFAAVFDADESIMNGWTHGIAQIQCDSNDSPSMRRRIRGILMSGKQFSLDSR 796
+ N F+ + C + IL++ + +
Sbjct: 253 ----VQNAKAWNAFN---------------LSC--------K-----ILLTTRFKQV--- 277
Query: 797 MDLISGDNTRTHTTPTSDNSDKDKLEEYAEAELSQ--GQEKTEL----TNGDP------- 843
D +S T TH + D+ + ++ L + +L +P
Sbjct: 278 TDFLSA-ATTTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 844 -------ADSQPYAKTGVKTDLKTEANKDLRKIENKEPHSSETKTVLKT----EESLSIP 892
A + V D T + + EP +E + + S IP
Sbjct: 335 ESIRDGLATWDNWKH--VNCDKLTTIIE--SSLNVLEP--AEYRKMFDRLSVFPPSAHIP 388
Query: 893 IIDVL 897
+L
Sbjct: 389 -TILL 392
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 22/185 (11%)
Query: 168 PEK---WDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWA 224
EK I+ +++K ++ + ++ + ++ +
Sbjct: 6 QEKGVSEKEILEELKKYRSLD-LKYEDGNIFGSMC--SNVLPITRKIVDIFLETNLGDPG 62
Query: 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284
LE + LG ++ + G + + +E+ L+ L +
Sbjct: 63 LFKGTKLLEEKAVALLGSLLNNKD----------AYGHIVSGGTEANLMALRCIKNIWRE 112
Query: 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEA 344
K ++ + EH +I AH S EK + + Y + ++ + +A
Sbjct: 113 KRRKGLSKNEHPKI------IVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDA 166
Query: 345 IERDK 349
+E
Sbjct: 167 VEDYD 171
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 3e-06
Identities = 31/334 (9%), Positives = 81/334 (24%), Gaps = 106/334 (31%)
Query: 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285
+ + + +T L +T S +CL A R +
Sbjct: 125 ASGASIMYALTNKILESFFKQLGLN------VHAIATPISTGM-SISLCLSAARKKYGSN 177
Query: 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL---IGLVNMRYIESDDKLSLRGDKLI 342
+H S KA + + + + D++ + + +
Sbjct: 178 V-----------------VIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIE 220
Query: 343 EAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI--VKGLGFYKMKLQTNFPNFI 400
AI+++ + P V+ + + +
Sbjct: 221 NAIKKEIELGNRP------------CVLSTLTFFPPRNSDDIVEIA-------------- 254
Query: 401 LSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGR 460
++ + ++ + + + I +L LK+ K R
Sbjct: 255 ----------KICENYDIPHIINGAYAIQNNYYLE---------------KLKKAF-KYR 288
Query: 461 LHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHW 520
+ V +S T + L+ ++ + + G A
Sbjct: 289 VDAVVSSSDKNL------LTPIGGGLVYSTDAEFIK--------EISLSYPGRA------ 328
Query: 521 QIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFS 554
+ + + G K + ++ +
Sbjct: 329 -----SATPVVNTLVSLLSMGSKNYLELVKNQKN 357
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 6e-06
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 12/123 (9%)
Query: 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKY 286
P TEL+ +N + + P E T V GV +SE+ ++ LA + + K
Sbjct: 91 PVTTELQNRCVNMIAHLFNAPLEEAETAV-----GVGTVGSSEAIMLAGLAFKRKWQNKR 145
Query: 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAI 345
+ ++ I EK V ++ ++ + + ++ +
Sbjct: 146 KAEGKPVDKPNI------VTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMV 199
Query: 346 ERD 348
+ +
Sbjct: 200 DEN 202
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 943 | |||
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 100.0 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 100.0 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 100.0 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 100.0 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 100.0 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 100.0 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 100.0 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 100.0 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 100.0 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 100.0 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 100.0 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.97 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.96 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.96 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.9 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.83 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.82 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.82 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.82 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.82 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.81 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.81 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.81 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.79 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.79 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.78 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.78 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.78 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.78 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.77 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.77 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.76 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.75 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.75 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.74 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.74 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.73 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.73 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.73 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.72 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.72 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.72 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.71 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.71 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.7 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.7 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.7 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.7 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.69 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.67 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.67 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.66 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.65 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.65 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.64 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.64 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.64 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.63 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.62 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.61 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.61 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.6 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.6 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.6 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.6 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.6 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.58 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.58 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.58 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.57 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.56 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.56 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.56 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.55 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.55 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.54 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.54 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.54 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.54 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.54 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.53 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.53 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.53 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.53 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.52 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.52 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.51 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.51 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.51 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.51 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.51 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.51 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.5 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.5 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.5 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.49 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.49 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.49 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.49 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.48 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.48 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.48 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.48 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.48 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.47 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.47 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.47 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.47 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.47 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.46 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.46 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.46 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.46 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.45 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.45 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.45 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.44 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.44 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.43 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.43 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.43 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.43 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.43 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.41 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.4 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.4 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.39 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.39 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.39 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.37 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.36 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.36 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.35 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.35 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.34 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.34 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.34 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.34 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.34 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.34 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.33 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.33 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.32 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.32 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.31 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.31 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.31 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.31 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.31 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.3 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.3 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.29 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.29 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.29 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.29 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.28 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.28 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.28 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.27 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.26 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.26 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.26 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.25 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.24 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.22 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.22 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.22 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.22 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.2 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.2 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.17 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.17 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.17 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.17 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.16 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.16 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.16 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.15 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.12 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.12 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.12 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.11 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.1 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.09 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.09 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.09 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.09 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.08 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.07 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.07 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.06 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.05 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.05 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.04 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.04 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.03 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.02 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 98.55 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 98.99 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 98.98 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 98.98 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 98.98 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 98.96 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 98.96 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 98.95 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 98.95 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 98.94 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 98.93 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 98.92 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 98.9 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 98.88 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 98.88 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 98.87 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 98.87 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 98.87 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 98.85 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 98.83 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 98.83 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 98.77 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 98.75 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 98.72 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 98.55 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 98.54 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 98.0 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 97.98 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 97.21 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 97.92 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 97.85 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 97.81 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 97.61 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 97.19 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 97.07 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 96.5 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 96.15 |
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-72 Score=637.88 Aligned_cols=466 Identities=54% Similarity=0.912 Sum_probs=420.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeE
Q psy11047 117 RKIPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHA 196 (943)
Q Consensus 117 ~~~~~e~fr~~~~~~vd~i~dyl~~~~~~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g 196 (943)
..||.++||+.+++++|.+++|+++++++||+|.++|+++++.++..+|++|++++++++++.+.++++.++|+||+|+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 83 (481)
T 4e1o_A 4 GSMEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMHA 83 (481)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHSGGGSCSSCCCCTTTTGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTBCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHH
Q psy11047 197 YFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLL 276 (943)
Q Consensus 197 ~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~ 276 (943)
|+++++++|++++++++.++|+|+..|..+|++++||.++++|+++++|+|..++...+.+.++|+||+|||+||++||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~ 163 (481)
T 4e1o_A 84 YYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALL 163 (481)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999976543222344689999999999999999
Q ss_pred HHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcE
Q psy11047 277 AGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPF 356 (943)
Q Consensus 277 aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~ 356 (943)
+||++.+.+.+..++++...++.++.+||+|+.+|+|+.|++.+++.+++.||+|++++||+++|+++|+++..+|..|+
T Consensus 164 ~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~ 243 (481)
T 4e1o_A 164 AARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPV 243 (481)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcE
Confidence 99998776554334544334445778999999999999999987777999999999999999999999999988888899
Q ss_pred EEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccce
Q psy11047 357 FIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGM 436 (943)
Q Consensus 357 ~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~ 436 (943)
+|++++|+|.+|++|||++|++ +|++||+ |+|||||||++ ++
T Consensus 244 ~vv~~~~~t~~G~id~l~~I~~--------------------la~~~~~-------~lhvDaA~g~~-~~---------- 285 (481)
T 4e1o_A 244 FVCATLGTTGVCAFDCLSELGP--------------------ICAREGL-------WLHIDAAYAGT-AF---------- 285 (481)
T ss_dssp EEEEEBSCTTTCCBCCHHHHHH--------------------HHHHHTC-------EEEEECTTGGG-GG----------
T ss_pred EEEEecCCCCCcCcCCHHHHHH--------------------HHHHcCC-------eEEeehhhHHH-HH----------
Confidence 9999999999999999999999 9999999 99999999987 33
Q ss_pred eeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccc
Q psy11047 437 VVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLR 507 (943)
Q Consensus 437 VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~ 507 (943)
.+++++..+.|+++||||++|+||||+ ++++..+..++...+.|+.
T Consensus 286 -------------------------~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~ 340 (481)
T 4e1o_A 286 -------------------------LCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLR 340 (481)
T ss_dssp -------------------------GSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGC
T ss_pred -------------------------hChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhcc
Confidence 456677778899999999999999998 5666666667777889998
Q ss_pred cCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccccccccccc
Q psy11047 508 HENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 587 (943)
Q Consensus 508 ~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~ 587 (943)
....+..+++.+|++++||+++++++|++++.+|.+|+++++++
T Consensus 341 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~------------------------------------ 384 (481)
T 4e1o_A 341 HANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRH------------------------------------ 384 (481)
T ss_dssp CTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHH------------------------------------
T ss_pred CcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHH------------------------------------
Confidence 76545456889999999999999999999999999999999998
Q ss_pred CCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcE
Q psy11047 588 TNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL 667 (943)
Q Consensus 588 ~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~ 667 (943)
..++|+++++.|+++|+|+++.++.+++|+|++++.+..+.++.++|+++|.++++++.+.+..+
T Consensus 385 ---------------~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~ 449 (481)
T 4e1o_A 385 ---------------GTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLI 449 (481)
T ss_dssp ---------------HHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEETTEEE
T ss_pred ---------------HHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEECCEEE
Confidence 46789999999999999999999999999999987777789999999999998999988888899
Q ss_pred EEE-eecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 668 GRA-QNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 668 lR~-v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
+|+ ++++++|++||+++++.|++++++++
T Consensus 450 lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 450 IRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999 68899999999999999999988765
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-72 Score=638.36 Aligned_cols=463 Identities=46% Similarity=0.806 Sum_probs=396.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEc
Q psy11047 119 IPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYF 198 (943)
Q Consensus 119 ~~~e~fr~~~~~~vd~i~dyl~~~~~~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~ 198 (943)
||.++||+.+++++|.+++|+++++++||+|.++|+++++.++..+|++|++++++++++.+.++++.++|+||+|+||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 80 (475)
T 3k40_A 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYF 80 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCSSCTTCSGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCcCceeeC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHH
Q psy11047 199 PALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAG 278 (943)
Q Consensus 199 ~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aA 278 (943)
+++++++++++++++.++|+|+..|..+|.+++||.++++|+++++|+|..+++ .+.+.++|+||+|||+||++||++|
T Consensus 81 ~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~-~~~~~~~gv~t~ggt~anl~al~~a 159 (475)
T 3k40_A 81 PTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLA-CSGGKGGGVIQGTASESTLVALLGA 159 (475)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCG-GGTSSCEEEEESCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhcc-ccCCCCCeEEcCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999986543 2234468999999999999999999
Q ss_pred HHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEE
Q psy11047 279 RTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358 (943)
Q Consensus 279 R~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~V 358 (943)
|++..++.+...+++...++.++++||+|+.+|+|+.|++.+++.+++.||+|++| ||+++|+++|+++..+|..|++|
T Consensus 160 r~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v 238 (475)
T 3k40_A 160 KAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYA 238 (475)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEE
Confidence 99876554333444433334457899999999999999997655699999999999 99999999999998888889999
Q ss_pred EEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceee
Q psy11047 359 FSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVV 438 (943)
Q Consensus 359 VaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~Vc 438 (943)
++++|+|.+|++||+++|++ +|++||+ |+|||||||++ .+
T Consensus 239 ~~~~~~t~~G~~~~l~~I~~--------------------la~~~~~-------~lhvD~A~~~~-~~------------ 278 (475)
T 3k40_A 239 VVTLGTTNSCAFDYLDECGP--------------------VGNKHNL-------WIHVDAAYAGS-AF------------ 278 (475)
T ss_dssp EEEBSCTTTCCBCCHHHHHH--------------------HHHHTTC-------EEEEECTTGGG-GG------------
T ss_pred EEEecCCCCcCcCCHHHHHH--------------------HHHHhCC-------eEEEeHHhHHH-HH------------
Confidence 99999999999999999999 9999999 99999999987 33
Q ss_pred eeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccC
Q psy11047 439 IRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHE 509 (943)
Q Consensus 439 FR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~ 509 (943)
.++.++..+.|++.+||+++|+|||++ ++++..+..++...+.|+.+.
T Consensus 279 -----------------------~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~ 335 (475)
T 3k40_A 279 -----------------------ICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHD 335 (475)
T ss_dssp -----------------------GSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC--------------
T ss_pred -----------------------hCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCC
Confidence 355667778899999999999999998 566666666677788899765
Q ss_pred CCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCC
Q psy11047 510 NSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTN 589 (943)
Q Consensus 510 ~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~ 589 (943)
..+..+++.+|++++||+++++++|++++.+|.+|+++++++
T Consensus 336 ~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~-------------------------------------- 377 (475)
T 3k40_A 336 MQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRR-------------------------------------- 377 (475)
T ss_dssp -------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
T ss_pred cCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHH--------------------------------------
Confidence 444456788999999999999999999999999999999998
Q ss_pred CcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEE
Q psy11047 590 FPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGR 669 (943)
Q Consensus 590 ~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR 669 (943)
..++|+++++.|+++|+|+++.++.+++|+|++++.+..+.++.++|+++|.++++++.+.+..++|
T Consensus 378 -------------~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR 444 (475)
T 3k40_A 378 -------------HCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLR 444 (475)
T ss_dssp -------------HHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEE
T ss_pred -------------HHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEE
Confidence 4678999999999999999999999999999998776778999999999999999998888989999
Q ss_pred E-eecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 670 A-QNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 670 ~-v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
+ ++++++|++||+++++.|+++++++++
T Consensus 445 ~~~~~~~tt~~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 445 MAICSRFTQSEDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9 688999999999999999999888764
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-63 Score=564.81 Aligned_cols=464 Identities=47% Similarity=0.827 Sum_probs=391.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEc
Q psy11047 119 IPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYF 198 (943)
Q Consensus 119 ~~~e~fr~~~~~~vd~i~dyl~~~~~~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~ 198 (943)
||.++||+.+++++|.+++|+++++++||++.++|+++++.++..+|++|++++++++++.+.+.++.++|+||+|+||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 80 (486)
T 1js3_A 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYF 80 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHH
Q psy11047 199 PALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAG 278 (943)
Q Consensus 199 ~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aA 278 (943)
++++++++.++++++.++|++...|..+|.++++|.++++|+++++|++..++. ...+.++|+||+|||+||++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~-~~~~~~~~v~t~ggTeA~~~al~~~ 159 (486)
T 1js3_A 81 PTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLA-GEAGEGGGVIQGSASEATLVALLAA 159 (486)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCC-TTTCSCEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcc-cCCCCCCeEEcCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999865421 1112357999999999999999999
Q ss_pred HHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEE
Q psy11047 279 RTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFF 357 (943)
Q Consensus 279 R~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~ 357 (943)
|++.+++.+...++.......++.+||+|+.+|+|+.+++. +|. .++.||+|++|+||+++|+++|+++.++|..|++
T Consensus 160 ~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~-~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~ 238 (486)
T 1js3_A 160 RTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGV-KLKAIPSDGKFAMRASALQEALERDKAAGLIPFF 238 (486)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTC-EEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCC-ceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceE
Confidence 98654422110000000001125679999999999999995 555 7999999999999999999999999888888999
Q ss_pred EEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcccccccccccee
Q psy11047 358 IFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMV 437 (943)
Q Consensus 358 VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~V 437 (943)
|++++|+|.+|++||+++|++ +|++||+ |+|||+|||++ .+
T Consensus 239 vv~~~~~n~tG~~~~l~~I~~--------------------la~~~~~-------~lhvD~a~g~~-~~----------- 279 (486)
T 1js3_A 239 VVATLGTTSCCSFDNLLEVGP--------------------ICHEEDI-------WLHVDAAYAGS-AF----------- 279 (486)
T ss_dssp EEEEBSCTTTCCBCCHHHHHH--------------------HHHHTTC-------EEEEECTTGGG-GG-----------
T ss_pred EEEeCCCCCCCCCCCHHHHHH--------------------HHHHcCC-------EEEEehhhHHH-HH-----------
Confidence 999999999999999999999 9999999 99999999987 33
Q ss_pred eeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCcccccc
Q psy11047 438 VIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRH 508 (943)
Q Consensus 438 cFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~ 508 (943)
.++.+++.+.|++.|||+++|+|||++ ++++..+.+.+...+.|+..
T Consensus 280 ------------------------~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~ 335 (486)
T 1js3_A 280 ------------------------ICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKH 335 (486)
T ss_dssp ------------------------GSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC--------
T ss_pred ------------------------HCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCC
Confidence 345566667788899999999999998 45555455566666788875
Q ss_pred CCC--CcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccc
Q psy11047 509 ENS--GLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKL 586 (943)
Q Consensus 509 ~~~--g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~ 586 (943)
... +...++.+|+++++||++++++|++++.+|.+|+++++++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~----------------------------------- 380 (486)
T 1js3_A 336 SHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRK----------------------------------- 380 (486)
T ss_dssp ----CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred CcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHH-----------------------------------
Confidence 432 2345778899999999999999999999999999999988
Q ss_pred cCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCc
Q psy11047 587 QTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQG 666 (943)
Q Consensus 587 ~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~ 666 (943)
..++++++.+.|+++|+++++.++.+++++|++.+.+.++.++.++|.++|+++++++.+.+..
T Consensus 381 ----------------~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 444 (486)
T 1js3_A 381 ----------------HVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQF 444 (486)
T ss_dssp ----------------HHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEE
T ss_pred ----------------HHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEECCEE
Confidence 3568899999999999999998889999999998655567899999999998888887788888
Q ss_pred EEEE-eecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 667 LGRA-QNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 667 ~lR~-v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
++|+ ++++++|++||+++++.|++++.++.++
T Consensus 445 ~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~~ 477 (486)
T 1js3_A 445 VLRFAICSRKVESGHVRLAWEHIRGLAAELLAA 477 (486)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 5799999999999999999998876554
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-60 Score=545.83 Aligned_cols=455 Identities=19% Similarity=0.260 Sum_probs=391.8
Q ss_pred ecCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCChhhHhhc---CCCCCCCCCCCHHHHHHHHHHHHcCCC
Q psy11047 112 VNPQSRKIPLIPVILVGKEMVDYIADYLENIRDR--RVYPDVKPGYLRSL---VPESAPVEPEKWDTIMGDIEKVIMPGI 186 (943)
Q Consensus 112 l~p~~~~~~~e~fr~~~~~~vd~i~dyl~~~~~~--pV~p~~~p~~l~~~---l~~~lPe~G~~~e~iL~~l~~~I~~~~ 186 (943)
+.|+.. +.++++..+++++|.+++|++++.++ +|++.++|++++.. ++..+|++|++++++++++++.+.++
T Consensus 14 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~- 90 (511)
T 3vp6_A 14 LLPAKN--GEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYG- 90 (511)
T ss_dssp STTSTT--CHHHHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHHCBTTBCCCCCSSCCCHHHHHHHHHHHHHTS-
T ss_pred cCCCCC--ChHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHhhcc-
Confidence 566653 57999999999999999999998776 57889999999999 89999999999999999999988766
Q ss_pred CCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCC
Q psy11047 187 THWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTT 266 (943)
Q Consensus 187 ~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsG 266 (943)
.+|+||+|+||++++.+++++++++++.++|++...|..+|.++++|.++++|+++++|++.. ..+|+||+|
T Consensus 91 ~~~~~p~f~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~--------~~~~~~t~g 162 (511)
T 3vp6_A 91 VRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSK--------DGDGIFSPG 162 (511)
T ss_dssp CCTTSTTEESSSSCCCCHHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSS--------SCEEEEESS
T ss_pred CCCCCCCceEeecCCCcHHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCC--------CCceEECCc
Confidence 557999999999999999999999999999999999999999999999999999999999853 147999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCC--ccEEEEecCCCCCcCHHHHHH
Q psy11047 267 ASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGL--VNMRYIESDDKLSLRGDKLIE 343 (943)
Q Consensus 267 GTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~--~~v~~Vp~D~~grmD~daLe~ 343 (943)
||+||+.||+++|+++++... .+|+.. .++.+||+|+.+|+|+.+++. +|. .+++.|++|.+|+||+++|++
T Consensus 163 gt~a~~~al~~a~~~~~~~~~--~~G~~~---~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~ 237 (511)
T 3vp6_A 163 GAISNMYSIMAARYKYFPEVK--TKGMAA---VPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEA 237 (511)
T ss_dssp HHHHHHHHHHHHHHHHCTHHH--HHCGGG---SCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhhh--hcCccc---CCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHH
Confidence 999999999999986532211 123211 246789999999999999995 443 389999999999999999999
Q ss_pred HHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 344 AIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 344 aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++..+|..|++|++++|+|.+|++|||++|++ +|++||+ |+|||+|||++
T Consensus 238 ~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~--------------------ia~~~~~-------~lhvD~a~~~~ 290 (511)
T 3vp6_A 238 KILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIAD--------------------ICEKYNL-------WLHVDAAWGGG 290 (511)
T ss_dssp HHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHH--------------------HHHHHTC-------EEEEEETTGGG
T ss_pred HHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHH--------------------HHHHcCC-------EEEEEccchhh
Confidence 99999888988999999999999999999999999 9999999 99999999987
Q ss_pred CccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcch
Q psy11047 424 PRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGA 494 (943)
Q Consensus 424 ~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~ 494 (943)
.+ .+++++..+.|+++|||+++|+|||++ ++++..
T Consensus 291 -~~-----------------------------------~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~ 334 (511)
T 3vp6_A 291 -LL-----------------------------------MSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGI 334 (511)
T ss_dssp -GG-----------------------------------GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTH
T ss_pred -Hh-----------------------------------hChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHH
Confidence 43 467778888999999999999999987 677766
Q ss_pred hhhhcccCccccccCCC--CcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccch
Q psy11047 495 LHRTFNVEPLYLRHENS--GLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGT 572 (943)
Q Consensus 495 L~~af~~~p~YL~~~~~--g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~ 572 (943)
+...+...+.|+..... ...+++++|+++++|+++++++|++++.+|.+|+++++++
T Consensus 335 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~--------------------- 393 (511)
T 3vp6_A 335 LQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINK--------------------- 393 (511)
T ss_dssp HHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHH---------------------
Confidence 66667778899976542 3346788899999999999999999999999999999998
Q ss_pred hhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEec--CCCccEEEEEecCCC-----------
Q psy11047 573 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPA--ARHLGMVVIRLLGEN----------- 639 (943)
Q Consensus 573 ~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~--~~~l~iV~Fr~~g~n----------- 639 (943)
..++|+++++.|+++|+|+++. ++.+++|+|++.+..
T Consensus 394 ------------------------------~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~ 443 (511)
T 3vp6_A 394 ------------------------------CLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRR 443 (511)
T ss_dssp ------------------------------HHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHH
T ss_pred ------------------------------HHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHH
Confidence 4678999999999999999998 689999999985421
Q ss_pred ----hHHHHHHHHHhccCcEEEeecccCC-CcEEEE-eecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 640 ----ILTEKLLKRLNSKGRLHCVPASLRI-QGLGRA-QNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 640 ----~l~~~Ll~~L~~~G~~~~s~t~~~g-~~~lR~-v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
..+.++.++|.++|.+++.+....+ ..++|+ ++++.++.+||++++++|++++.++-
T Consensus 444 ~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~~ 506 (511)
T 3vp6_A 444 EKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDLH 506 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 2356788999999988777554444 458999 55999999999999999999988764
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-59 Score=532.82 Aligned_cols=454 Identities=19% Similarity=0.257 Sum_probs=385.8
Q ss_pred ecCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCChhhHhhc---CCCCCCCCCCCHHHHHHHHHHHHcCCC
Q psy11047 112 VNPQSRKIPLIPVILVGKEMVDYIADYLENIRDR--RVYPDVKPGYLRSL---VPESAPVEPEKWDTIMGDIEKVIMPGI 186 (943)
Q Consensus 112 l~p~~~~~~~e~fr~~~~~~vd~i~dyl~~~~~~--pV~p~~~p~~l~~~---l~~~lPe~G~~~e~iL~~l~~~I~~~~ 186 (943)
+.|+. |+.++|++.+++++|++++|++++.++ ||++.++|+++++. ++..+|++|++++++++++++.+.++.
T Consensus 11 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 88 (504)
T 2okj_A 11 LLPAK--NGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGV 88 (504)
T ss_dssp STTST--TCHHHHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHSCBTTBCCCCCSSCCCHHHHHHHHHHHHHTSC
T ss_pred ccCCC--CCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHHhhccC
Confidence 56777 889999999999999999999998775 49999999999999 999999999999999999988776665
Q ss_pred CCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCC
Q psy11047 187 THWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTT 266 (943)
Q Consensus 187 ~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsG 266 (943)
. ++||+|++|++++..+++++++++..++|+|...|..+|.++++|..+++|+++++|++.. ..+|+||+|
T Consensus 89 ~-~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~--------~~~~~~t~g 159 (504)
T 2okj_A 89 R-TGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSK--------DGDGIFSPG 159 (504)
T ss_dssp C-TTCTTEESSSSCCCCHHHHHHHHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSS--------SCEEEEESS
T ss_pred C-CCCCCEEEEccCCCCHHHHHHHHHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCCC--------CCCEEEeCC
Confidence 4 4599999999999999999999999999999999999999999999999999999999842 147999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCc--cEEEEecCCCCCcCHHHHHH
Q psy11047 267 ASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLV--NMRYIESDDKLSLRGDKLIE 343 (943)
Q Consensus 267 GTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~--~v~~Vp~D~~grmD~daLe~ 343 (943)
||+||++|++++|++..+..+ .+|+.. .++++|++|+.+|+|+.|++. +|.+ +++.||++++|+||+++|++
T Consensus 160 gtea~~~al~~~~~~~~~~~~--~~G~~~---~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~ 234 (504)
T 2okj_A 160 GAISNMYSIMAARYKYFPEVK--TKGMAA---VPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEA 234 (504)
T ss_dssp HHHHHHHHHHHHHHHHCTTHH--HHCGGG---SCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHh--hcCccc---cCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHH
Confidence 999999999999975432111 012110 135689999999999999995 4532 89999999999999999999
Q ss_pred HHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 344 AIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 344 aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++.++|..|.+|++++|+|.+|++||+++|++ +|++||+ |+|||+||+++
T Consensus 235 ~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~--------------------la~~~g~-------~lhvD~a~~~~ 287 (504)
T 2okj_A 235 KILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIAD--------------------ICEKYNL-------WLHVDAAWGGG 287 (504)
T ss_dssp HHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHH--------------------HHHHHTC-------EEEEEETTGGG
T ss_pred HHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHH--------------------HHHHcCC-------EEEEehhhhhH
Confidence 99988888878999999999999999999999999 9999999 99999999988
Q ss_pred CccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcch
Q psy11047 424 PRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGA 494 (943)
Q Consensus 424 ~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~ 494 (943)
.+ .+++++..++|++.+||+++|+|||++ ++++..
T Consensus 288 -~~-----------------------------------~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~ 331 (504)
T 2okj_A 288 -LL-----------------------------------MSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGI 331 (504)
T ss_dssp -GG-----------------------------------GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTH
T ss_pred -HH-----------------------------------hCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHH
Confidence 43 355666778888899999999999988 466555
Q ss_pred hhhhcccCccccccCCC--CcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccch
Q psy11047 495 LHRTFNVEPLYLRHENS--GLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGT 572 (943)
Q Consensus 495 L~~af~~~p~YL~~~~~--g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~ 572 (943)
+...+...+.|+.+.+. +..+++.+|+++++||++++++|++++.+|.+|+++++++
T Consensus 332 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~--------------------- 390 (504)
T 2okj_A 332 LQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINK--------------------- 390 (504)
T ss_dssp HHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHH---------------------
Confidence 54455567889865432 3346788899999999999999999999999999999888
Q ss_pred hhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEec--CCCccEEEEEecCC------------
Q psy11047 573 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPA--ARHLGMVVIRLLGE------------ 638 (943)
Q Consensus 573 ~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~--~~~l~iV~Fr~~g~------------ 638 (943)
..++++++++.|+++|+++++. ++..++|+|++.+.
T Consensus 391 ------------------------------~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~ 440 (504)
T 2okj_A 391 ------------------------------CLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRR 440 (504)
T ss_dssp ------------------------------HHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHH
T ss_pred ------------------------------HHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhH
Confidence 3578999999999999999997 68899999998532
Q ss_pred ---ChHHHHHHHHHhccCcEEEeecccCCC-cEEEEe-ecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 639 ---NILTEKLLKRLNSKGRLHCVPASLRIQ-GLGRAQ-NFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 639 ---n~l~~~Ll~~L~~~G~~~~s~t~~~g~-~~lR~v-~~~~tt~edId~ll~~I~~~~~~l 695 (943)
+..+..+.++|.++|.++++++.+.+. +++|++ .++.+|++||+++++.|+++++++
T Consensus 441 ~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 441 EKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp HHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 123678899999999888876666653 699995 479999999999999999887654
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-58 Score=523.70 Aligned_cols=455 Identities=18% Similarity=0.230 Sum_probs=374.4
Q ss_pred ceeeecCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCC-CCCCCCCCHHHHHHHHHHHHcCCC
Q psy11047 108 KIFVVNPQSRKIPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPE-SAPVEPEKWDTIMGDIEKVIMPGI 186 (943)
Q Consensus 108 ~~~fl~p~~~~~~~e~fr~~~~~~vd~i~dyl~~~~~~pV~p~~~p~~l~~~l~~-~lPe~G~~~e~iL~~l~~~I~~~~ 186 (943)
+.+|++|+.++ .++||+.+++++|++++|+++. ++ +++.++|+++++.++. .+|++|++++++++++.+.+++++
T Consensus 20 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 95 (497)
T 2qma_A 20 KKHFIHTGELG--SAEFASVMSHTTSAMKSVFEQV-NA-PYSGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAKNA 95 (497)
T ss_dssp GGGBCCSSTTT--THHHHHHHHHHHHHHHHHHHHC-CS-SSCCCCHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHTTTTS
T ss_pred HHhccCCCCCC--HHHHHHHHHHHHHHHHHHHhhc-cC-CCCCCCHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 56799998866 5899999999999999999987 34 4888999999999987 589999999999999999999999
Q ss_pred CCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCC
Q psy11047 187 THWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTT 266 (943)
Q Consensus 187 ~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsG 266 (943)
++|+||+|++|+.++..+++++++++..++|++...|..+|+++++|..+++|+++++|+++. ..|+||+|
T Consensus 96 ~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~---------~~~~~t~g 166 (497)
T 2qma_A 96 IFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEK---------ADGIFTSG 166 (497)
T ss_dssp CCTTSTTBCSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTT---------CEEEEESS
T ss_pred CCCCCCCeeEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCC---------CCeEEcCC
Confidence 999999999999999999999999999999999999999999999999999999999999753 47999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhc---ccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCc--cEEEEecCCCCCcCHHH
Q psy11047 267 ASESTLICLLAGRTEAIRKYQ---QSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLV--NMRYIESDDKLSLRGDK 340 (943)
Q Consensus 267 GTeANL~AL~aAR~~~l~~~~---~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~--~v~~Vp~D~~grmD~da 340 (943)
||+||+.|+++||+++..+.. ...+|+.. ..++.+|++|+.+|+|+.+++. +|.+ +++.||++++++||+++
T Consensus 167 gt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~--~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~ 244 (497)
T 2qma_A 167 GTQSNQMGLMLARDWIADKLSGHSIQKLGLPD--YADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITK 244 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCG--GGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGG
T ss_pred chHHHHHHHHHHHHHHHHhhcccchhhccccc--ccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHH
Confidence 999999999999986543110 00012110 0135689999999999999985 5543 79999999999999999
Q ss_pred HHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhh
Q psy11047 341 LIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 420 (943)
Q Consensus 341 Le~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~ 420 (943)
|+++|+++.++|..|++|++++|+|.+|.+||+++|++ +|++||+ |+|||+||
T Consensus 245 L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~--------------------l~~~~~~-------~l~vD~a~ 297 (497)
T 2qma_A 245 LDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIAD--------------------MAVKHDM-------WMHVDGAY 297 (497)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH--------------------HHHHHTC-------EEEEEETT
T ss_pred HHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHH--------------------HHHHcCC-------EEEEehhh
Confidence 99999988777777889999999999999999999999 9999999 99999999
Q ss_pred cCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccC
Q psy11047 421 LGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKN 491 (943)
Q Consensus 421 GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~ 491 (943)
+++ .+ .++ +++.+.|++.+||+++|+|||++ +++
T Consensus 298 ~~~-~~-----------------------------------~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~ 340 (497)
T 2qma_A 298 GGA-LI-----------------------------------LSS-HKSRLKGVERAHSISVDFHKLFYQTISCGALLVND 340 (497)
T ss_dssp GGG-GG-----------------------------------GST-TGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESC
T ss_pred hHH-HH-----------------------------------hCc-chHhhcCcccCCEEEEcchhccCCCcceEEEEEeC
Confidence 987 32 233 55667788899999999999988 455
Q ss_pred cchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy11047 492 SGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLG 571 (943)
Q Consensus 492 ~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g 571 (943)
+..+ ..+...+.|+...... .+++..++++++|+++++++|++++.+|.+|+++++++
T Consensus 341 ~~~~-~~~~~~~~yl~~~~~~-~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~-------------------- 398 (497)
T 2qma_A 341 KSNF-KFLLHHADYLNREHDE-LPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDH-------------------- 398 (497)
T ss_dssp GGGG-GGGCC---------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHH--------------------
T ss_pred HHHH-HHhcCCchhcCCcccc-CCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHH--------------------
Confidence 5444 3444556787643221 24667789999999999999999999999999999988
Q ss_pred hhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCC----hHHHHHHH
Q psy11047 572 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGEN----ILTEKLLK 647 (943)
Q Consensus 572 ~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n----~l~~~Ll~ 647 (943)
..+++++|.+.|+++|+++++.++..++|+|++.+.+ .++..+.+
T Consensus 399 -------------------------------~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~ 447 (497)
T 2qma_A 399 -------------------------------LLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRL 447 (497)
T ss_dssp -------------------------------HHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHH
Confidence 3568999999999999999998899999999997642 45678889
Q ss_pred HHhccCcEEEeecccCCCcEEEEee-cCCCCHHHHHHHHHHHHHHHHH
Q psy11047 648 RLNSKGRLHCVPASLRIQGLGRAQN-FTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 648 ~L~~~G~~~~s~t~~~g~~~lR~v~-~~~tt~edId~ll~~I~~~~~~ 694 (943)
+|.++|.++..++.+.+..++|+++ ++.+|++||+++++.|++++++
T Consensus 448 ~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 448 EALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp HHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999998877777777788999965 9999999999999999988765
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-56 Score=513.75 Aligned_cols=449 Identities=17% Similarity=0.216 Sum_probs=372.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHH-HHHhcCCC--CCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCC
Q psy11047 116 SRKIPLIPVILVGKEMVDYIAD-YLENIRDR--RVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSP 192 (943)
Q Consensus 116 ~~~~~~e~fr~~~~~~vd~i~d-yl~~~~~~--pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sP 192 (943)
+.+|+.++|++.+++++|.+++ |++++.++ ||+|.++|++++..++..+|++|++++++++++++.+.++.. +.||
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~p 109 (515)
T 2jis_A 31 SLAGDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRSQGESQKQILERCRAVIRYSVK-TGHP 109 (515)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHTTTGGGCTTSCSCCCCCHHHHHHHHCCCCCSSCCCHHHHHHHHHHHHHHSCC-TTST
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCHHHHHhhcccCCCCCCCCHHHHHHHHHHHhcCCCC-CCCC
Confidence 3458899999999999999999 99988755 999999999999999999999999999999999987766654 4599
Q ss_pred ceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHH
Q psy11047 193 YMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTL 272 (943)
Q Consensus 193 rf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL 272 (943)
+|++|++++..++++++++++..+|++...|..+|.++++|.++++|+++++|++. ..|+||+|||+||+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~----------~~~~~t~ggtea~~ 179 (515)
T 2jis_A 110 RFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSS----------GDGIFCPGGSISNM 179 (515)
T ss_dssp TEESSSCCCCCHHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSS----------CEEEEESSHHHHHH
T ss_pred CeEEEeeCCCCHHHHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhCCCC----------CCeEEcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999984 37999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCC--ccEEEEecCCCCCcCHHHHHHHHHHhh
Q psy11047 273 ICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGL--VNMRYIESDDKLSLRGDKLIEAIERDK 349 (943)
Q Consensus 273 ~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~--~~v~~Vp~D~~grmD~daLe~aI~~d~ 349 (943)
+|+.++|++..+..+ .+|.. ..++++|++|+.+|+|+.+++. +|. .+++.||++++++||+++|+++|+++.
T Consensus 180 ~al~~ar~~~~~~~~--~~G~~---~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~ 254 (515)
T 2jis_A 180 YAVNLARYQRYPDCK--QRGLR---TLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAE 254 (515)
T ss_dssp HHHHHHHHHHCTTHH--HHCGG---GSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHh--hcCcc---ccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHH
Confidence 999999976421110 01210 0235689999999999999995 453 289999999999999999999999887
Q ss_pred ccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccc
Q psy11047 350 KKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIP 429 (943)
Q Consensus 350 ~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp 429 (943)
.+|..|.+|++++|+|.+|++||+++|++ +|++||+ |+|||+||+++ .+
T Consensus 255 ~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~--------------------la~~~g~-------~l~vD~a~~~~-~~--- 303 (515)
T 2jis_A 255 AEGAVPFLVSATSGTTVLGAFDPLEAIAD--------------------VCQRHGL-------WLHVDAAWGGS-VL--- 303 (515)
T ss_dssp HTTCEEEEEEEEBSCTTTCCBCCHHHHHH--------------------HHHHHTC-------EEEEEETTGGG-GG---
T ss_pred hCCCCcEEEEEeCCCCCCCCccCHHHHHH--------------------HHHHcCC-------eEEEehhhhhH-HH---
Confidence 77877999999999999999999999999 9999999 99999999987 43
Q ss_pred cccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCc-chhhhhc
Q psy11047 430 AARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNS-GALHRTF 499 (943)
Q Consensus 430 ~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~-~~L~~af 499 (943)
.++.+++.+.|++.+||+++|+|||++ ++++ ..+...+
T Consensus 304 --------------------------------~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~ 351 (515)
T 2jis_A 304 --------------------------------LSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCH 351 (515)
T ss_dssp --------------------------------GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHH
T ss_pred --------------------------------hChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHh
Confidence 345566678888899999999999987 5665 4444455
Q ss_pred ccCccccccCCC--CcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhc
Q psy11047 500 NVEPLYLRHENS--GLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVK 577 (943)
Q Consensus 500 ~~~p~YL~~~~~--g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~ 577 (943)
...++|+.+... +..++++.++++++||++++++|++++.+|.+|+++++++
T Consensus 352 ~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~-------------------------- 405 (515)
T 2jis_A 352 GSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQ-------------------------- 405 (515)
T ss_dssp CC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHH--------------------------
T ss_pred cCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHH--------------------------
Confidence 557789865322 2235677889999999999999999999999999998888
Q ss_pred ccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCC--------ChH-------H
Q psy11047 578 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE--------NIL-------T 642 (943)
Q Consensus 578 ~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~--------n~l-------~ 642 (943)
..++++++++.|+++|+++++.++.+++|+|++.+. ..+ +
T Consensus 406 -------------------------~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~ 460 (515)
T 2jis_A 406 -------------------------AFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVA 460 (515)
T ss_dssp -------------------------HHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHH
T ss_pred -------------------------HHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHH
Confidence 357899999999999999999988899999998421 122 2
Q ss_pred HHHHHHHhccCcEEEeecccCC-CcEEEEee-cCCCCHHHHHHHHHHHHHHHHH
Q psy11047 643 EKLLKRLNSKGRLHCVPASLRI-QGLGRAQN-FTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 643 ~~Ll~~L~~~G~~~~s~t~~~g-~~~lR~v~-~~~tt~edId~ll~~I~~~~~~ 694 (943)
..+.++|.++|.++++++.+.+ ..++|+++ ++.+|++||+++++.|++++++
T Consensus 461 ~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 461 PVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp HHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 3467788899988777665544 46999966 9999999999999999887643
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=387.53 Aligned_cols=401 Identities=12% Similarity=0.063 Sum_probs=308.6
Q ss_pred hhHhhcCCCCCCCCCCCHHHHHHHHHHHH-cCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHH
Q psy11047 154 GYLRSLVPESAPVEPEKWDTIMGDIEKVI-MPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTEL 232 (943)
Q Consensus 154 ~~l~~~l~~~lPe~G~~~e~iL~~l~~~I-~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateL 232 (943)
..++..++..+|++|++++++++++.+.+ .++.++|+||+|++ .. .+..+++++..++|.+...|..+|.+.++
T Consensus 8 ~~~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~---~~--~~~~v~e~~~~a~~~~~~~~~~~~~~~~l 82 (452)
T 2dgk_A 8 SISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQ---TW--DDENVHKLMDLSINKNWIDKEEYPQSAAI 82 (452)
T ss_dssp -------CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC---CC--CCHHHHHHHHHTTTCBTTCTTTCHHHHHH
T ss_pred HHhhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC---CC--chHHHHHHHHHHhccCCCChhhChhHHHH
Confidence 44566777899999999999999999988 78888999999886 11 12457899999999998899999999999
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
|.++++|+++++|++...+ +...|++|+|||+||++|++++++++.++.. .+|+.. .+..|++|+ +|+
T Consensus 83 ~~~~~~~la~l~g~~~~~~-----~~~~~~~t~ggtea~~~al~a~~~~~~~~~~--~~G~~~----~~~~vi~~~-~h~ 150 (452)
T 2dgk_A 83 DLRCVNMVADLWHAPAPKN-----GQAVGTNTIGSSEACMLGGMAMKWRWRKRME--AAGKPT----DKPNLVCGP-VQI 150 (452)
T ss_dssp HHHHHHHHHHHTTCCCCTT-----SCCEEEEESSHHHHHHHHHHHHHHHHHHHHH--HTTCCC----SCCEEEESS-CCH
T ss_pred HHHHHHHHHHHhCCCcccc-----cCCceEEeCCHHHHHHHHHHHHHHHHHHHHH--hcCCCC----CCcEEEECC-CcH
Confidence 9999999999999986410 0135999999999999999999875432211 122110 124677888 999
Q ss_pred HHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 313 SVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 313 Sv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
++.+++.+.+.+++.||+++ +++||+++|+++|+++ |.+|+++.++|.+|.+||+++|++
T Consensus 151 ~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~------------- 211 (452)
T 2dgk_A 151 CWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHD------------- 211 (452)
T ss_dssp HHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHH-------------
T ss_pred HHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHH-------------
Confidence 99999965444899999986 7999999999999764 789999999999999999999999
Q ss_pred ccCchHHHHHHc------CCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccc
Q psy11047 392 LQTNFPNFILSY------FPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP 465 (943)
Q Consensus 392 L~RrfR~iar~~------Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~ 465 (943)
+|++| |+ |+|||+||+++ .. |. ..++
T Consensus 212 -------ia~~~~~~~~~~~-------~l~vD~a~~~~-~~--~~-------------------------------~~~~ 243 (452)
T 2dgk_A 212 -------ALDKFQADTGIDI-------DMHIDAASGGF-LA--PF-------------------------------VAPD 243 (452)
T ss_dssp -------HHHHHHHHHCCCC-------CEEEECTTGGG-TH--HH-------------------------------HCTT
T ss_pred -------HHHHHhhccCCCC-------cEEEEcccHHH-HH--Hh-------------------------------hCcc
Confidence 99996 99 99999999987 21 00 0111
Q ss_pred hhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCc-chHHHHH
Q psy11047 466 ASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF-RALKLWF 535 (943)
Q Consensus 466 ~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf-rALklW~ 535 (943)
....+ .++.+||+++|+|||++ ++++..+.+.+...+.|+.. ++..++++++|++ .++++|+
T Consensus 244 ~~~~~-~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~r~~~~~~~~~a 315 (452)
T 2dgk_A 244 IVWDF-RLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGG-------QIGTFAINFSRPAGQVIAQYY 315 (452)
T ss_dssp CCCST-TSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTC-------CEEECCSCCSCBCHHHHHHHH
T ss_pred chhhc-CCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCC-------CCCCcccCCCChhHHHHHHHH
Confidence 11112 25689999999999986 45544343444445667642 2235678899987 8899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHh
Q psy11047 536 VIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 615 (943)
Q Consensus 536 tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~ 615 (943)
+++.+|.+|+++++++ ..++++++.+.|+
T Consensus 316 al~~lg~~g~~~~~~~---------------------------------------------------~~~~a~~l~~~L~ 344 (452)
T 2dgk_A 316 EFLRLGREGYTKVQNA---------------------------------------------------SYQVAAYLADEIA 344 (452)
T ss_dssp HHHHHHHHHHHHHHHH---------------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHH---------------------------------------------------HHHHHHHHHHHHH
Confidence 9999999999988888 3568899999999
Q ss_pred CCCCeEEecC----CCccEEEEEecCCC--hHH-HHHHHHHhccCcE---EEeecccCCCcEEEEeecCCCCHHHHHHHH
Q psy11047 616 GDPRFEIPAA----RHLGMVVIRLLGEN--ILT-EKLLKRLNSKGRL---HCVPASLRIQGLGRAQNFTRTTNDDITRDW 685 (943)
Q Consensus 616 ~~p~~eIl~~----~~l~iV~Fr~~g~n--~l~-~~Ll~~L~~~G~~---~~s~t~~~g~~~lR~v~~~~tt~edId~ll 685 (943)
++++++++.+ +.+++|+|++++.. .++ .++.++|.++|++ +..+..+.+..++|++++..+|++|+++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li 424 (452)
T 2dgk_A 345 KLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLL 424 (452)
T ss_dssp TTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHH
T ss_pred hCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHH
Confidence 9999999875 68999999997531 123 7889999999973 444555556779999888888899999999
Q ss_pred HHHHHHHHHHHH
Q psy11047 686 NEIRNTATEILA 697 (943)
Q Consensus 686 ~~I~~~~~~ll~ 697 (943)
+.|+++.+.+.+
T Consensus 425 ~~l~~~~~~~~~ 436 (452)
T 2dgk_A 425 EDYKASLKYLSD 436 (452)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999988766543
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=382.59 Aligned_cols=412 Identities=13% Similarity=0.098 Sum_probs=323.1
Q ss_pred CCCCCChhhHhhcCCC-CCCCCCCCHHHHHHHHHHHHcCCCCCCCCCce-eEEccCCCChHHHHHHHHHHHHhccCcccc
Q psy11047 147 VYPDVKPGYLRSLVPE-SAPVEPEKWDTIMGDIEKVIMPGITHWQSPYM-HAYFPALNSYPSLLGDMLSDAINCLGFTWA 224 (943)
Q Consensus 147 V~p~~~p~~l~~~l~~-~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf-~g~~~~~~s~~silgd~L~~alN~n~~~~~ 224 (943)
..|...+.|++..+|. .+|++|.+++++++++++.+.. ..||++ ++.+.+.. ++..+.+++..++|.+...|.
T Consensus 14 ~~~~~~~~~~~~~lp~~~~p~~~~~~~~~~~~~~~~i~l----~gnp~~~l~s~~t~~-~~~~v~~~l~~~~~~~~~~~~ 88 (502)
T 3hbx_A 14 VHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELML----DGNPRLNLASFVTTW-MEPECDKLIMSSINKNYVDMD 88 (502)
T ss_dssp CSCTTTSSGGGSCCCSSSCCSSCCCHHHHHHHHHHHGGG----SCCGGGBTTCCSCCC-CCHHHHHHHHHTTTCBTTCTT
T ss_pred ccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHhcc----CCCCCceeccccCCC-CCHHHHHHHHHHhccCCCChh
Confidence 3455568899999998 9999999999999999988752 257875 33332222 334578889999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.+|.++++|.++++|+++++|++... +....|++|+|||+||++++++++..+.++.+. +|.. ..++.|
T Consensus 89 ~~p~~~~le~~~~~~la~l~g~~~~~-----~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~--~G~~----~~~~~v 157 (502)
T 3hbx_A 89 EYPVTTELQNRCVNMIAHLFNAPLEE-----AETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA--EGKP----VDKPNI 157 (502)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCS-----SCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH--TTCC----CSCCEE
T ss_pred cChhHHHHHHHHHHHHHHHhCCCccc-----ccCCcceecCcHHHHHHHHHHHHHHHHhHHHHh--cCCC----CCCcEE
Confidence 99999999999999999999998310 112478999999999999999988765443221 1210 124578
Q ss_pred EecCCCchHHHHHHHHCCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 305 YCSDQAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 305 ~~S~~aHySv~KAa~LG~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
++|+.+|+|+.+++.+.+..++.||++++ ++||+++|+++|+++ |.+|+++.++|.+|.++|+++|++
T Consensus 158 i~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~----- 226 (502)
T 3hbx_A 158 VTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLND----- 226 (502)
T ss_dssp EEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCTT------EEEEEEEBSCTTTCCBCCHHHHHH-----
T ss_pred EEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhhC------CEEEEEecCCCCCCcccCHHHHHH-----
Confidence 99999999999999755558999998865 999999999999865 789999999999999999999999
Q ss_pred ccccccccccCchHHHHHHc------CCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhc
Q psy11047 384 GLGFYKMKLQTNFPNFILSY------FPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNS 457 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~------Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~ 457 (943)
+|+++ |+ |+|||+||+++ .. |.
T Consensus 227 ---------------ia~~~~~~~~~~~-------~l~VD~A~~~~-~~--p~--------------------------- 254 (502)
T 3hbx_A 227 ---------------LLVEKNKETGWDT-------PIHVDAASGGF-IA--PF--------------------------- 254 (502)
T ss_dssp ---------------HHHHHHHHHCCCC-------CEEEECTTGGG-TH--HH---------------------------
T ss_pred ---------------HHHHhhhccCCCC-------eEEEECCccch-hh--hh---------------------------
Confidence 99999 99 99999999977 21 00
Q ss_pred cCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCc
Q psy11047 458 KGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF 528 (943)
Q Consensus 458 ~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf 528 (943)
..+.....+ .++.+||+++++|||++ ++++..+...+...+.|+... ...+++.++|+.
T Consensus 255 ----~~~~~~~~~-~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~-------~~~~~~~~sr~~ 322 (502)
T 3hbx_A 255 ----LYPELEWDF-RLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGAD-------QPTFTLNFSKGS 322 (502)
T ss_dssp ----HCTTCCCST-TSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSC-------EEECCSCCSCBS
T ss_pred ----hCccccccc-CCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCC-------CCCccccCCchH
Confidence 122222222 25689999999999995 466555545555566787542 234677889975
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHH
Q psy11047 529 -RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 607 (943)
Q Consensus 529 -rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA 607 (943)
.++++|++++.+|.+||.+.+++ ..+++
T Consensus 323 ~~~~a~~~al~~lg~~g~~~~~~~---------------------------------------------------~~~~a 351 (502)
T 3hbx_A 323 SQVIAQYYQLIRLGHEGYRNVMEN---------------------------------------------------CRENM 351 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------------HHHHH
Confidence 78999999999999999988888 46788
Q ss_pred HHHHHHHhCCCCeEEecC-CCccEEEEEecCCChH-HHHHHHHHhccCcEE---EeecccCCCcEEEEeecCCCCHHHHH
Q psy11047 608 QKFEALVLGDPRFEIPAA-RHLGMVVIRLLGENIL-TEKLLKRLNSKGRLH---CVPASLRIQGLGRAQNFTRTTNDDIT 682 (943)
Q Consensus 608 ~~l~~~L~~~p~~eIl~~-~~l~iV~Fr~~g~n~l-~~~Ll~~L~~~G~~~---~s~t~~~g~~~lR~v~~~~tt~edId 682 (943)
++|++.|+++++|+++.+ +.+++|+|++++...+ ...+.++|.++|++. ..|+...+..++|++++..+|.+|++
T Consensus 352 ~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid 431 (502)
T 3hbx_A 352 IVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAE 431 (502)
T ss_dssp HHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHH
T ss_pred HHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHH
Confidence 999999999999999987 8999999999864323 358999999999863 23344556789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy11047 683 RDWNEIRNTATEILAELA 700 (943)
Q Consensus 683 ~ll~~I~~~~~~ll~~~~ 700 (943)
.+++.|+++.+.+.+...
T Consensus 432 ~li~~L~~~l~~l~~~~~ 449 (502)
T 3hbx_A 432 RLVIDIEKVMRELDELPS 449 (502)
T ss_dssp HHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 999999998877655433
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-35 Score=330.21 Aligned_cols=433 Identities=16% Similarity=0.164 Sum_probs=305.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcC-CCCCCCCCceeEEccCCC-ChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHH
Q psy11047 162 ESAPVEPEKWDTIMGDIEKVIMP-GITHWQSPYMHAYFPALN-SYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNW 239 (943)
Q Consensus 162 ~~lPe~G~~~e~iL~~l~~~I~~-~~~~~~sPrf~g~~~~~~-s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~w 239 (943)
..+|++|.+.+++++++.+.... ...+|.+|+|+|+++.+. ....++.+.+....+.|...|..+|...++|.++.+|
T Consensus 36 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 115 (497)
T 3mc6_A 36 PQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSM 115 (497)
T ss_dssp SSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHH
Confidence 47899999999999999987753 567899999999876654 2334455555555555778899999999999999999
Q ss_pred HHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH
Q psy11047 240 LGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL 319 (943)
Q Consensus 240 La~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~ 319 (943)
+++++|++.. ...+++|+|||+||..++.++|++..++ +|+ .+..|+++..+|+++.+++.
T Consensus 116 la~~~g~~~~--------~~~~~~~~ggt~a~~~a~~a~~~~~~~~-----~g~------~~~~Vi~~~~~h~~~~~~~~ 176 (497)
T 3mc6_A 116 VLRMFNAPSD--------TGCGTTTSGGTESLLLACLSAKMYALHH-----RGI------TEPEIIAPVTAHAGFDKAAY 176 (497)
T ss_dssp HHHHTTCCTT--------TCCEEEESSHHHHHHHHHHHHHHHHHHH-----SCC------SSCEEEEETTSCHHHHHHHH
T ss_pred HHHHhCCCCC--------CCeEEEcCcHHHHHHHHHHHHHHHHHhc-----CCC------CCceEEEeCCccHHHHHHHH
Confidence 9999999822 1479999999999999999998764321 232 23468899999999999996
Q ss_pred HCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHH
Q psy11047 320 IGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPN 398 (943)
Q Consensus 320 LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~ 398 (943)
+.+.+++.||+++ ++++|+++|+++|+++ +.+|+++.+++.+|.++|+++|++
T Consensus 177 ~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~l~~i~~-------------------- 230 (497)
T 3mc6_A 177 YFGMKLRHVELDPTTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGK-------------------- 230 (497)
T ss_dssp HSCCEEEEECBCTTTCSBCTTTTGGGCCSS------EEEEEEETTCTTTCCCCSCTTTTT--------------------
T ss_pred HcCCeEEEEecCcccCcCCHHHHHHHHhhC------CEEEEEECCCCCCCcCCCHHHHHH--------------------
Confidence 5455899999987 8999999999998754 789999999999999999999999
Q ss_pred HHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeE
Q psy11047 399 FILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQN 478 (943)
Q Consensus 399 iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADS 478 (943)
+|++||+ |+|||+||+++ .+ ++. +..|.-.++++.... ..+|+
T Consensus 231 la~~~g~-------~livD~a~~~~-~~--~f~------------------------~~~~~~~~~~~~~~~---~g~d~ 273 (497)
T 3mc6_A 231 IAQKYKL-------PLHVDSCLGSF-IV--SFM------------------------EKAGYKNLPLLDFRV---PGVTS 273 (497)
T ss_dssp HHHHTTC-------CEEEETTTTHH-HH--GGG------------------------TTTTCCSCCCCSTTS---TTCCE
T ss_pred HHHHhCC-------EEEEECcchhh-hh--hhh------------------------hhhcccCCccccccC---CCCcE
Confidence 9999999 99999999875 21 100 000000122233222 35799
Q ss_pred EEEcCCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCc-chHHHHHHHHHHHHHHHHHH
Q psy11047 479 FTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF-RALKLWFVIRNFGIKGLQKH 548 (943)
Q Consensus 479 ItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf-rALklW~tLr~~G~~Gl~~~ 548 (943)
+++++|||++ ++++......+...+.|+.. .++..++.++|.. ..+.+|++++.+|..|+.++
T Consensus 274 ~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~ 346 (497)
T 3mc6_A 274 ISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGG-------LYGSPTLAGSRPGAIVVGCWATMVNMGENGYIES 346 (497)
T ss_dssp EEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTS-------CBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCC-------CcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHH
Confidence 9999999985 33332211111222223221 1234556666543 35679999999999999988
Q ss_pred HHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhC-CCCeEEecCCC
Q psy11047 549 IREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG-DPRFEIPAARH 627 (943)
Q Consensus 549 I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~-~p~~eIl~~~~ 627 (943)
+++ ..++++++.+.|.+ +|+++++.++.
T Consensus 347 ~~~---------------------------------------------------~~~~~~~l~~~L~~~~~g~~~~~~~~ 375 (497)
T 3mc6_A 347 CQE---------------------------------------------------IVGAAMKFKKYIQENIPDLDIMGNPR 375 (497)
T ss_dssp HHH---------------------------------------------------HHHHHHHHHHHHHHSCTTCEECSCCC
T ss_pred HHH---------------------------------------------------HHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 888 35678889999988 79999998899
Q ss_pred ccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAELAEETQRVQ 707 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~~~~~~~~~ 707 (943)
.++++|+..+.+ ..++.++|.++|+. +.. ...+..+|+.+. .+|.++++++++.|+++.+++.+...
T Consensus 376 ~~~v~~~~~~~~--~~~l~~~L~~~Gi~-v~~--~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~~~~------- 442 (497)
T 3mc6_A 376 YSVISFSSKTLN--IHELSDRLSKKGWH-FNA--LQKPVALHMAFT-RLSAHVVDEICDILRTTVQELKSESN------- 442 (497)
T ss_dssp SSEEEEECTTTT--HHHHHHHHHTTTCB-CEE--CCSSCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTCC---------
T ss_pred eeEEEEeCCCCC--HHHHHHHHHhCCEE-Eec--CCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHhCcC-------
Confidence 999999986543 57888999999864 332 223446899555 67899999999999988765432210
Q ss_pred ccccccccccccccccccccccccccCCCCccchhccchhhhccchh
Q psy11047 708 VTKRTRVPLKETKGRNALFGSSLLLANSPMSPKIMNGSFAAVFDADE 754 (943)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (943)
. + +...++.+-||++--..-..++.++...+++.+|.+..
T Consensus 443 --~----~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (497)
T 3mc6_A 443 --S----K-PSPDGTSALYGVAGSVKTAGVADKLIVGFLDALYKLGP 482 (497)
T ss_dssp ----------------------------CCTHHHHHHHHHTTCC---
T ss_pred --c----C-CCCCCCCccccccccCCChHHHHHHHHHHHHHHccCCC
Confidence 0 0 12456788899876655578899999999999998654
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=326.01 Aligned_cols=428 Identities=14% Similarity=0.132 Sum_probs=322.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCC-CChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHH
Q psy11047 162 ESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPAL-NSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWL 240 (943)
Q Consensus 162 ~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~-~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wL 240 (943)
..+|++|.+.+++++++.+.+.++..+|.+|+|+|++... ..++..+.+.+....+.|...+..+|...++|.++.+|+
T Consensus 69 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~l 148 (514)
T 3mad_A 69 ARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMT 148 (514)
T ss_dssp SSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHH
Confidence 4688999999999999999888888889999999997654 456678889898888999999999999999999999999
Q ss_pred HHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH
Q psy11047 241 GKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI 320 (943)
Q Consensus 241 a~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L 320 (943)
++++|++.. ....+|+||+|||+||..++.++|....++ .| ..+..|+++..+|+++.+++.+
T Consensus 149 a~~~g~~~~------~~~v~~~~t~ggt~a~~~al~a~~~~g~~~-----~g------~~~d~Vi~~~~~~~~~~~~~~~ 211 (514)
T 3mad_A 149 AHMLGGDAA------GGTVCGTVTSGGTESLLLAMKTYRDWARAT-----KG------ITAPEAVVPVSAHAAFDKAAQY 211 (514)
T ss_dssp HHHTTGGGG------TSCCEEEEESSHHHHHHHHHHHHHHHHHHH-----HC------CSSCEEEEETTSCTHHHHHHHH
T ss_pred HHHcCCCCc------cCCcceEEcCcHHHHHHHHHHHHHHHhhhh-----cC------CCCCeEEEeCccchHHHHHHHH
Confidence 999999831 011467999999999999999998653221 11 1234688999999999999954
Q ss_pred CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHH
Q psy11047 321 GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFI 400 (943)
Q Consensus 321 G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~ia 400 (943)
.+..++.|+++++++||+++|+++|+++ +.+|+++.+++.+|.++|+++|++ +|
T Consensus 212 ~G~~v~~v~~~~~~~~d~~~Le~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~--------------------la 265 (514)
T 3mad_A 212 FGIKLVRTPLDADYRADVAAMREAITPN------TVVVAGSAPGYPHGVVDPIPEIAA--------------------LA 265 (514)
T ss_dssp HTCEEEEECBCTTSCBCHHHHHHHCCTT------EEEEEEETTCTTTCCCCCHHHHHH--------------------HH
T ss_pred cCCeeEEeeeCCCCCCCHHHHHHHhccC------CEEEEEeCCCCCCccccCHHHHHH--------------------HH
Confidence 3347999999999999999999999754 788999999999999999999999 99
Q ss_pred HHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEE
Q psy11047 401 LSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFT 480 (943)
Q Consensus 401 r~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSIt 480 (943)
++||+ |+|+|+||+++ .+ +. +...|. ..+.+.... ..+|+++
T Consensus 266 ~~~~i-------~livDea~~~~-~~--~~------------------------~~~~g~-~~~~~~~~~---~g~d~~~ 307 (514)
T 3mad_A 266 AEHGI-------GCHVDACLGGF-IL--PW------------------------AERLGY-PVPPFDFRL---EGVTSVS 307 (514)
T ss_dssp HHHTC-------EEEEECTTTTT-TH--HH------------------------HHHTTC-CCCCCSTTS---TTCCEEE
T ss_pred HHhCC-------eEEEecccccc-cc--hh------------------------HHhcCC-CCCcccccC---CCCcEEE
Confidence 99999 99999999987 32 10 000111 012232222 3569999
Q ss_pred EcCCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCc-chHHHHHHHHHHHHHHHHHHHH
Q psy11047 481 IVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF-RALKLWFVIRNFGIKGLQKHIR 550 (943)
Q Consensus 481 iDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf-rALklW~tLr~~G~~Gl~~~I~ 550 (943)
+++|||++ +++.......+...+.|. +. .+..+++.++|.. ..+++|++++.+|..++.+.++
T Consensus 308 ~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~ 380 (514)
T 3mad_A 308 ADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWP-----GG--LYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATR 380 (514)
T ss_dssp ECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCT-----TC--SEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECchhccCCCCCeEEEEEeCHHHhccccccccccC-----CC--cccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999966 333322211111111111 11 1234566777764 4679999999999999998888
Q ss_pred HHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccE
Q psy11047 551 EIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGM 630 (943)
Q Consensus 551 ~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~i 630 (943)
+ ..++++++.+.|++.|+++++.++ .++
T Consensus 381 ~---------------------------------------------------~~~~~~~l~~~L~~~~g~~~~~~~-~~~ 408 (514)
T 3mad_A 381 R---------------------------------------------------ILQAADRLKAGVRAIPSLKILGDP-LWV 408 (514)
T ss_dssp H---------------------------------------------------HHHHHHHHHHHHHTSTTCEESSCC-SSE
T ss_pred H---------------------------------------------------HHHHHHHHHHHHhhCCCeEEeCCC-eEE
Confidence 8 346788999999999999998766 568
Q ss_pred EEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEE-eecCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q psy11047 631 VVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRA-QNFTRTTNDDITRDWNEIRNTATEILAELAEETQRVQVT 709 (943)
Q Consensus 631 V~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~-v~~~~tt~edId~ll~~I~~~~~~ll~~~~~~~~~~~~~ 709 (943)
+.|+..+.+ ..++.++|.++|++. .. ......+|+ +.++.+++++|+++++.|+++.+++.++..
T Consensus 409 ~~~~~~~~~--~~~l~~~L~~~Gi~v-~g--~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~~~--------- 474 (514)
T 3mad_A 409 IAVASDELN--IYQVMEEMAGRGWRL-NG--LHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHPE--------- 474 (514)
T ss_dssp EEEECSSSC--HHHHHHHHHTTTCBC-EE--ETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHCTT---------
T ss_pred EEEeCCCCC--HHHHHHHHHhcCCEe-cc--CCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCCC---------
Confidence 888875543 468889999998653 32 233568999 556888889999999999988776543211
Q ss_pred ccccccccccccccccccccccccCCCCccchhccchhhhccc
Q psy11047 710 KRTRVPLKETKGRNALFGSSLLLANSPMSPKIMNGSFAAVFDA 752 (943)
Q Consensus 710 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (943)
. ..+.++.||++-- .|..++.+++.++.+++|+-
T Consensus 475 -------~-~~~~~~~yg~~~~-~~~~~~~~~~~~~~~~~~~~ 508 (514)
T 3mad_A 475 -------K-ATGMAPVYGMAAA-APPELVRQVLTGFIDLLYEV 508 (514)
T ss_dssp -------C-CCTTHHHHHHHHH-SCHHHHHHHHHHHHHHHTCC
T ss_pred -------C-CCCceehhhhccc-CCHHHHHHHHHHHHHHHHHH
Confidence 0 1567899999553 34588889999999999973
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=304.01 Aligned_cols=368 Identities=13% Similarity=0.049 Sum_probs=257.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCC-----------------CCceeEEccCCCChHHHHHHHHHHHHhccCcccc
Q psy11047 162 ESAPVEPEKWDTIMGDIEKVIMPGITHWQ-----------------SPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWA 224 (943)
Q Consensus 162 ~~lPe~G~~~e~iL~~l~~~I~~~~~~~~-----------------sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~ 224 (943)
..+|++|.+-++|...|.+.-...+.+|. .||||||+++. +++||++.. |. .|.
T Consensus 21 ~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~----~~~~d~l~~----~~-~~~ 91 (450)
T 3bc8_A 21 GKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI----GRSGDISAV----QP-KAA 91 (450)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB----CC-----------CC-SBH
T ss_pred ccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecch----hHHHHHHHh----Cc-ccc
Confidence 37899999999999999886554555553 36899999986 456788877 44 889
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChH-HHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTAS-ESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGT-eANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
.+|....+|..++.|+.+++|+|.. .+|++++||| +++.++|.+||.+. ++ .+.
T Consensus 92 ~~~~~~~~e~~~~~~~~~~lGlp~~---------~~~~lV~GaT~~~~a~~L~aar~~~--------~~-------~~~- 146 (450)
T 3bc8_A 92 GSSLLNKITNSLVLNVIKLAGVHSV---------ASCFVVPMATGMSLTLCFLTLRHKR--------PK-------AKY- 146 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTC---------CEEEEESSCHHHHHHHHHHHHHHHC--------TT-------CCE-
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCC---------ceEEEECCHHHHHHHHHHHHcchhh--------cC-------CCE-
Confidence 9999999999999999999999976 4689999998 88999999888631 11 133
Q ss_pred EEecCCCchHHHHHHHH-CCc--cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 304 AYCSDQAHSSVEKAGLI-GLV--NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 304 V~~S~~aHySv~KAa~L-G~~--~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
|+++..+|.|+.||+.+ |.. .+..++.++.+.||+++|+++|+++... .+++|++|.+++.+|++|||++|++
T Consensus 147 viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~--~~~~Vv~t~t~~g~g~~ddl~~Ia~-- 222 (450)
T 3bc8_A 147 IIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPE--HILCLHSTTACFAPRVPDRLEELAV-- 222 (450)
T ss_dssp EEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGG--GEEEEEEESSCCTTBCCCCHHHHHH--
T ss_pred EEEECCcHHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCC--CEEEEEEECCcCCCceecCHHHHHH--
Confidence 44456799999999965 543 2333444778999999999999987532 3789999999998999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCc
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGR 460 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~ 460 (943)
+|++||+ |+|||+|||+...+
T Consensus 223 ------------------ia~~~gi-------~l~VD~A~G~~~~~---------------------------------- 243 (450)
T 3bc8_A 223 ------------------ICANYDI-------PHVVNNAYGLQSSK---------------------------------- 243 (450)
T ss_dssp ------------------HHHHHTC-------CEEEECTTTTTCHH----------------------------------
T ss_pred ------------------HHHHCCC-------eEEEECCCchhhhh----------------------------------
Confidence 9999999 99999999987222
Q ss_pred ccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchH
Q psy11047 461 LHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRAL 531 (943)
Q Consensus 461 ~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrAL 531 (943)
..+..+..++. ++||+++.|+||||+ +|++..+... ...|... +. ...++
T Consensus 244 -~~~l~~~a~~~-~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~---~~~~~g~--------------~s--~SpsL 302 (450)
T 3bc8_A 244 -CMHLIQQGARV-GRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDI---SKMYPGR--------------AS--ASPSL 302 (450)
T ss_dssp -HHHHHHHHHHH-SCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHH---HHHSCSC--------------BC--SHHHH
T ss_pred -hHhHHHHHhcc-cCCCEEEECCccCCCchhccEEEEecCHHHHHHH---HHHhhcC--------------Cc--ccHHH
Confidence 00000111111 689999999999999 3444433221 1123211 00 11259
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHH
Q psy11047 532 KLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 611 (943)
Q Consensus 532 klW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~ 611 (943)
++|++++.+|.+||++.+++ .+++|++++
T Consensus 303 ~l~~~l~~~G~~g~~~~i~~---------------------------------------------------~~~~a~~l~ 331 (450)
T 3bc8_A 303 DVLITLLSLGCSGYRKLLKE---------------------------------------------------RKEMFVYLS 331 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------------------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------------------------------------------HHHHHHHHH
Confidence 99999999999999999998 457888999
Q ss_pred HHHhCCC---CeEEecCCCccE-EEEEecCC----ChHHHHHHHHHhcc---CcEEE-------------ee----cccC
Q psy11047 612 ALVLGDP---RFEIPAARHLGM-VVIRLLGE----NILTEKLLKRLNSK---GRLHC-------------VP----ASLR 663 (943)
Q Consensus 612 ~~L~~~p---~~eIl~~~~l~i-V~Fr~~g~----n~l~~~Ll~~L~~~---G~~~~-------------s~----t~~~ 663 (943)
+.|++++ ++.++..+..++ .++.+... +....+|.-.+... |.-.. .. ...-
T Consensus 332 ~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~ 411 (450)
T 3bc8_A 332 TQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNY 411 (450)
T ss_dssp HHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCC
T ss_pred HHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccceeeecccccchhHHHHHHcCCeeecC
Confidence 9998888 888887654433 23433311 11233444444333 32221 10 0112
Q ss_pred CCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 664 IQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 664 g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
+...+=+.++...+++|++++++.|+++.....++
T Consensus 412 ~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~ 446 (450)
T 3bc8_A 412 PCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE 446 (450)
T ss_dssp SSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 34456668899999999999999999987665444
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=284.75 Aligned_cols=388 Identities=11% Similarity=0.043 Sum_probs=263.0
Q ss_pred ecCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCC-
Q psy11047 112 VNPQSRKIPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQ- 190 (943)
Q Consensus 112 l~p~~~~~~~e~fr~~~~~~vd~i~dyl~~~~~~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~- 190 (943)
|+...+.+=...|.+.++++++...++++++-. ...+|++|.+.+++.+.+.+........|-
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~lp~~g~~~~~i~~~~~~~~~~~~~~yld 85 (456)
T 2z67_A 22 LDFNIEGLIPKNMEKRGELVLNEYLKEIEDVFN----------------HRKIPENGIDDEKIKLFLKFLSMMDTDKDPK 85 (456)
T ss_dssp BCCCCCSSSCHHHHHHHHHHHHHHTHHHHHHHH----------------HCSCCSSCCCHHHHHHHHHHHHTTBGGGCTT
T ss_pred cChhhhccCcHHHHHHHHHHHHHHHHHHHHhhc----------------cCCCCCCCCCHHHHHHHHHHHHhcccccccc
Confidence 444455565789999999999988888776211 135788899999998887775443222221
Q ss_pred ----------------CCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccC
Q psy11047 191 ----------------SPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTK 254 (943)
Q Consensus 191 ----------------sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~ 254 (943)
+|+|++|+++.. ..+++ +..|. .|..+|.+.++|..+.+|+++++|++.
T Consensus 86 ~aa~~~~~~~v~~a~~~~~~~~~~~~~~----~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~la~~~g~~~------ 150 (456)
T 2z67_A 86 SVRIGEREARTYSKIHEELSSGFCHGIG----RSGNL----VDPQP-KASGASIMYALTNKILESFFKQLGLNV------ 150 (456)
T ss_dssp CEECSSCCCCCSCHHHHHHTTTCTTCBS----BTTBT----TSCCT-TBHHHHHHHHHHHHHHHHHHHHTTCCC------
T ss_pred ccccccccccccccccCccccccCCCcc----HHHHH----HhhCc-ccccCcHHHHHHHHHHHHHHHHcCCCC------
Confidence 111222222211 11111 11222 566777899999999999999999964
Q ss_pred cCCCCcEEEcCChH-HHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEec---
Q psy11047 255 VDSPGGGVLQTTAS-ESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIES--- 330 (943)
Q Consensus 255 ~~~~~~GvfTsGGT-eANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~--- 330 (943)
. ++||+||| ++|+.++.++|... + ++ .|+++..+|+|+.+++...+..++.|+.
T Consensus 151 ----~-~~~t~g~te~a~~~al~~~~~~~--------~--------~~-~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~ 208 (456)
T 2z67_A 151 ----H-AIATPISTGMSISLCLSAARKKY--------G--------SN-VVIYPYASHKSPIKAVSFVGMNMRLVETVLD 208 (456)
T ss_dssp ----E-EEEESSCHHHHHHHHHHHHHHHH--------C--------CC-EEEEECCCCHHHHHHHHHTTCEEEEECCEEE
T ss_pred ----C-EEEeCcHHHHHHHHHHHHHHHhc--------C--------CC-EEEEECCCcHHHHHHHHHcCCCceEEEEecc
Confidence 2 89999999 57777888766421 1 12 3555666999999998643446777665
Q ss_pred CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCcc
Q psy11047 331 DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSV 410 (943)
Q Consensus 331 D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l 410 (943)
+++|.+|+++|+++|+.+..++ .+.+|+.+.+++.+|.++|+++|++ +|+++|+
T Consensus 209 ~~~~~~d~~~l~~~i~~~~~~~-~~~~vv~~~~nn~tG~i~~l~~I~~--------------------la~~~g~----- 262 (456)
T 2z67_A 209 GDRVYVPVEDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDDIVEIAK--------------------ICENYDI----- 262 (456)
T ss_dssp TTEEECCHHHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCCHHHHHH--------------------HHHHHTC-----
T ss_pred CCCCCcCHHHHHHHHHHHhhCC-CeEEEEEeCCCCCCCCcCCHHHHHH--------------------HHHHcCC-----
Confidence 7889999999999994321122 3788889999999999999999999 9999999
Q ss_pred chhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC--
Q psy11047 411 RLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR-- 488 (943)
Q Consensus 411 ~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-- 488 (943)
|+|||+||++. .+ | .++.....+.+ .+|++++++|||++
T Consensus 263 --~v~vD~A~~~~-~~--------g--------------------------~~~~~~~~~~~--~~D~~~~s~hK~~~~p 303 (456)
T 2z67_A 263 --PHIINGAYAIQ-NN--------Y--------------------------YLEKLKKAFKY--RVDAVVSSSDKNLLTP 303 (456)
T ss_dssp --CEEEECTTTTT-CH--------H--------------------------HHHHHHHHHTS--CCSEEEEEHHHHHCCC
T ss_pred --cEEEECcchHH-HH--------H--------------------------hhHHHHHhhCC--CCCEEEEcCCCCcCCC
Confidence 99999999877 22 0 11222223333 68999999999876
Q ss_pred -------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy11047 489 -------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKHIREIFSGLALPA 560 (943)
Q Consensus 489 -------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~ 560 (943)
+|++..+. .+ .+.|++ .+. ..++.+|.++..+|..|+.+.+++
T Consensus 304 ~g~G~l~~~~~~~~~-~l--~~~~~g-----------------~~~~~~~~~~~aal~~l~~~~~~~~~~~--------- 354 (456)
T 2z67_A 304 IGGGLVYSTDAEFIK-EI--SLSYPG-----------------RASATPVVNTLVSLLSMGSKNYLELVKN--------- 354 (456)
T ss_dssp SSCEEEEESCHHHHH-HH--HTTSCS-----------------CBCSHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred CCeEEEEEcCHHHHh-hc--CcCCCC-----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 22322221 11 222321 111 127889999999999999888877
Q ss_pred ccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCC---CeEEecCCCccEEEEEecC
Q psy11047 561 FLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDP---RFEIPAARHLGMVVIRLLG 637 (943)
Q Consensus 561 ~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p---~~eIl~~~~l~iV~Fr~~g 637 (943)
..++++++.+.|++.| ++.++.+. ++|+|++..
T Consensus 355 ------------------------------------------~~~~~~~l~~~L~~~~~~~g~~v~~~~--~~v~~~~~~ 390 (456)
T 2z67_A 355 ------------------------------------------QKNSKKLLDELLNDLSKKTGGKFLDVE--SPIASCISV 390 (456)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHSSCCBCCCC--CSSEEEEEC
T ss_pred ------------------------------------------HHHHHHHHHHHHHhcccccCCEecCCC--CeEEEEEec
Confidence 3467888888888875 76666544 999999832
Q ss_pred CChHHHHHHHHHhccCc--EEEe---------ecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 638 ENILTEKLLKRLNSKGR--LHCV---------PASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 638 ~n~l~~~Ll~~L~~~G~--~~~s---------~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
.+ ....+.++|.++|. +-+. +......+++|++++..+|++||+++++.|+++
T Consensus 391 ~~-~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 391 NS-DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp SS-CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred cc-HHHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHH
Confidence 11 14567777777763 1121 000112468999999999999999999998764
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-27 Score=252.69 Aligned_cols=382 Identities=15% Similarity=0.089 Sum_probs=276.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHH
Q psy11047 163 SAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGK 242 (943)
Q Consensus 163 ~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~ 242 (943)
.+|+.|.+.+++++++.+.. +...+|.+|+|+|+.++++. |.+ .+.+...+..+...+...|...+++.++.+|+++
T Consensus 4 ~lp~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~v-~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 80 (397)
T 3f9t_A 4 NMQEKGVSEKEILEELKKYR-SLDLKYEDGNIFGSMCSNVL-PIT-RKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGS 80 (397)
T ss_dssp SCCSSCCCHHHHHHHHHHHH-TTSCCGGGTCBCSCSCCCCC-THH-HHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCeEEEecCCCc-HHH-HHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHH
Confidence 57899999999999999865 55677889999999977654 343 4555556655545555667889999999999999
Q ss_pred HhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCC
Q psy11047 243 MIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGL 322 (943)
Q Consensus 243 LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~ 322 (943)
++|.+.. ..++|+|||+||..++.+++..+..+.. .+.. ..+...|+++..+|+++.+++...+
T Consensus 81 ~~~~~~~----------~i~~~~ggt~a~~~~~~~~~~~~~~~~~---~~~~---~~~gd~vl~~~~~~~~~~~~~~~~g 144 (397)
T 3f9t_A 81 LLNNKDA----------YGHIVSGGTEANLMALRCIKNIWREKRR---KGLS---KNEHPKIIVPITAHFSFEKGREMMD 144 (397)
T ss_dssp HTTCTTC----------EEEEESCHHHHHHHHHHHHHHHHHHHHH---TTCC---CCSSCEEEEETTCCTHHHHHHHHHT
T ss_pred HhCCCCC----------CEEEecCcHHHHHHHHHHHHHHHHhhhh---hccc---CCCCeEEEECCcchhHHHHHHHHcC
Confidence 9999754 6899999999999999988765322110 1110 0123468889999999999885434
Q ss_pred ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHH
Q psy11047 323 VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS 402 (943)
Q Consensus 323 ~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~ 402 (943)
.+++.||.++++.+|+++|+++|++. .+.+|+.+.+++.+|.++|+++|.+ +|++
T Consensus 145 ~~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~--------------------l~~~ 199 (397)
T 3f9t_A 145 LEYIYAPIKEDYTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDNIEELSK--------------------IAKE 199 (397)
T ss_dssp CEEEEECBCTTSSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCCBCCHHHHHH--------------------HHHH
T ss_pred ceeEEEeeCCCCcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCCCCCHHHHHH--------------------HHHH
Confidence 48999999999999999999999873 1678888889999999999999999 9999
Q ss_pred cCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEc
Q psy11047 403 YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIV 482 (943)
Q Consensus 403 ~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiD 482 (943)
||+ |+|+|++|+++ .+ +.... +. .+ .| ...... +. . .+|+++++
T Consensus 200 ~~~-------~li~Dea~~~~-~~--~~~~~-~~---~~----------------~~--~~~~~~--~~-~-~~~~~~~s 243 (397)
T 3f9t_A 200 NNI-------YIHVDAAFGGL-VI--PFLDD-KY---KK----------------KG--VNYKFD--FS-L-GVDSITID 243 (397)
T ss_dssp HTC-------EEEEECTTGGG-TG--GGCCG-GG---CC----------------TT--CCCCCS--GG-G-TCSEEECC
T ss_pred hCC-------eEEEEccccch-hh--hhccc-cc---cc----------------cc--cccccc--cc-c-cCCeEEEc
Confidence 999 99999999876 22 10000 00 00 00 000111 11 1 57999999
Q ss_pred CCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 483 PSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKHIREI 552 (943)
Q Consensus 483 pHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~I~~~ 552 (943)
+||+++ ++++. +...+....+|+... ...++.+++. ...+.+|.+++.++..++.+++++.
T Consensus 244 ~~K~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 314 (397)
T 3f9t_A 244 PHKMGHCPIPSGGILFKDIG-YKRYLDVDAPYLTET--------RQATILGTRVGFGGACTYAVLRYLGREGQRKIVNEC 314 (397)
T ss_dssp TTTTTCCCSSCEEEEESSGG-GGGGTCEECTTSSSS--------EECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCceEEEEeCHH-HHHhhccCCccccCC--------CccccccccccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999996 23322 112222223344321 1223445654 4567889999999888888888873
Q ss_pred HhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEE
Q psy11047 553 FSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVV 632 (943)
Q Consensus 553 l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~ 632 (943)
.++++++.+.|++. +++++.++..++++
T Consensus 315 ---------------------------------------------------~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 342 (397)
T 3f9t_A 315 ---------------------------------------------------MENTLYLYKKLKEN-NFKPVIEPILNIVA 342 (397)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHT-TCCBSSCCSSSEEE
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHC-CCEEEcCCCccEEE
Confidence 35677788888877 88888888999999
Q ss_pred EEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 633 IRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 633 Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
|+..+ ...+.+.|.++|. ++.+. ..+.++|++++..+++++++++++.|+++.
T Consensus 343 ~~~~~----~~~~~~~l~~~gi-~v~~~--~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l 395 (397)
T 3f9t_A 343 IEDED----YKEVCKKLRDRGI-YVSVC--NCVKALRIVVMPHIKREHIDNFIEILNSIK 395 (397)
T ss_dssp EECTT----HHHHHHHHHHTTC-BCEEC--SSSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred EEeCC----HHHHHHHHHhCCe-EEecc--CCCCEEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 99864 5678888888885 34442 225799999889999999999999998764
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-21 Score=223.44 Aligned_cols=377 Identities=12% Similarity=0.072 Sum_probs=246.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCcccc-CChhHHHHHHHHHHHH
Q psy11047 162 ESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWA-SSPACTELEIITMNWL 240 (943)
Q Consensus 162 ~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~-~SPaateLE~~Vi~wL 240 (943)
-.+| +.+..++++.+.++-..+...+.+..|+| -......|.++..+.....+-+..... .++...+++.++.+|+
T Consensus 40 ~~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l 116 (474)
T 1wyu_B 40 PRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLG-SCTMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYL 116 (474)
T ss_dssp CCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBT-TTCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHH
T ss_pred CCCC--CCCHHHHHHHHHHHHhCCCCcccCccccc-cccccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHH
Confidence 3577 78888999999887665544445666776 222233456665555442222222222 5788899999999999
Q ss_pred HHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH
Q psy11047 241 GKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI 320 (943)
Q Consensus 241 a~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L 320 (943)
++++|++. ..++|+|||+|++.|++++|..... +|.. ..+..|++++.+|.+..+++.+
T Consensus 117 a~~~g~~~-----------~~~~~~ggt~a~~~al~~~~~~~~~------~Gd~----~~r~~Vlv~~~~h~~~~~~~~~ 175 (474)
T 1wyu_B 117 KALTGMDA-----------ITLEPAAGAHGELTGILIIRAYHED------RGEG----RTRRVVLVPDSAHGSNPATASM 175 (474)
T ss_dssp HHHHTCSE-----------EECCCSSHHHHHHHHHHHHHHHHHH------TTCT----TTCCEEEEETTSCTHHHHHHHH
T ss_pred HHHHCCCc-----------eeecChHHHHHHHHHHHHHHHHHHh------cCCc----cCCCEEEEeCCcChhhHHHHHH
Confidence 99999964 3678999999999999998865332 2210 1234678889999999998865
Q ss_pred CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc-ccHHHhhhhccccccccccccccCchHHH
Q psy11047 321 GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV-DSYCCLGTAMIVKGLGFYKMKLQTNFPNF 399 (943)
Q Consensus 321 G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI-DpL~eIa~~~~~~d~~~~~i~L~RrfR~i 399 (943)
.+.+++.|+++++|.+|+++|+++|+++ +.+|+.+..+ .+|.+ +|+++|++ +
T Consensus 176 ~G~~vv~v~~~~~~~~d~~~L~~~i~~~------t~~v~~~~pn-~~G~~~~~l~~i~~--------------------l 228 (474)
T 1wyu_B 176 AGYQVREIPSGPEGEVDLEALKRELGPH------VAALMLTNPN-TLGLFERRILEISR--------------------L 228 (474)
T ss_dssp TTCEEEEECBCTTSSBCHHHHHHHCSTT------EEEEEECSSC-TTSCCCTTHHHHHH--------------------H
T ss_pred CCCEEEEecCCCCCCcCHHHHHHhhCCC------ceEEEEECCC-CCcccCCCHHHHHH--------------------H
Confidence 4458999999989999999999999754 5677777765 59999 89999999 9
Q ss_pred HHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEE
Q psy11047 400 ILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNF 479 (943)
Q Consensus 400 ar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSI 479 (943)
|++||+ |+|+|++|+.. .+ | ..+. .. + .+|.+
T Consensus 229 ~~~~g~-------~li~Dea~~~~-~~--------g--------------------------~~~~-~~-~----g~di~ 260 (474)
T 1wyu_B 229 CKEAGV-------QLYYDGANLNA-IM--------G--------------------------WARP-GD-M----GFDVV 260 (474)
T ss_dssp HHHHTC-------EEEEEGGGGGG-TT--------T--------------------------TCCH-HH-H----TCSEE
T ss_pred HHHcCC-------EEEEeCchhhh-hc--------c--------------------------CCCc-cc-C----CCcEE
Confidence 999999 99999999754 21 0 0111 11 1 47999
Q ss_pred EEcCCCccCccC------cchh-h-hhc-c-cCccccccCCCCcccccCccccCCC-C--------CcchHHHHHHHHHH
Q psy11047 480 TIVPSSLLRVKN------SGAL-H-RTF-N-VEPLYLRHENSGLAIDYMHWQIPLS-K--------RFRALKLWFVIRNF 540 (943)
Q Consensus 480 tiDpHK~L~vr~------~~~L-~-~af-~-~~p~YL~~~~~g~~~d~~~~tie~S-R--------rfrALklW~tLr~~ 540 (943)
++++||+++... -+.+ . ..+ . ....++... |..+.+ .++.+.+ | .....+.|..++.+
T Consensus 261 ~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~--g~~~~~-~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~ 337 (474)
T 1wyu_B 261 HLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERG--EEGFYL-DFDRPKSIGRVRSFYGNFLALVRAWAYIRTL 337 (474)
T ss_dssp ECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEEC--SSCEEE-ECCCTTCCCCSSSTTSCHHHHHHHHHHHHHH
T ss_pred EEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeecc--CCeeEe-cccCcccCcccccCcCcHHHHHHHHHHHHHH
Confidence 999999887431 1111 0 000 0 010111100 000000 0011100 1 12245678888888
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCe
Q psy11047 541 GIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 620 (943)
Q Consensus 541 G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~ 620 (943)
|.+++.+.+++. .++++++.+.|++. ++
T Consensus 338 g~~~l~~~~~~~---------------------------------------------------~~~~~~l~~~L~~~-g~ 365 (474)
T 1wyu_B 338 GLEGLKKAAALA---------------------------------------------------VLNARYLKELLKEK-GY 365 (474)
T ss_dssp HHHHHHHHHHHH---------------------------------------------------HHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHH---------------------------------------------------HHHHHHHHHHHhhc-Cc
Confidence 988888777772 45677777777776 77
Q ss_pred EEecCC-CccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc--CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 621 EIPAAR-HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL--RIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 621 eIl~~~-~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~--~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
++..+. ..+.+.+.+. .+.....+.++|.++|.+. ..... ....++|+++...+++++++++++.|+++..+
T Consensus 366 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 366 RVPYDGPSMHEFVAQPP-EGFRALDLAKGLLELGFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp BCSSCSSCCSCEEEBCS-TTCCHHHHHHHHHHTTCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred EecCCCCcceEEEEEcC-CCCCHHHHHHHHHHCCccc-cccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 774332 3332333442 1122578888888888642 11111 12568999888888999999999999887654
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-18 Score=184.47 Aligned_cols=311 Identities=12% Similarity=0.036 Sum_probs=206.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
+..+.....+..++.+++++++|.+.+ ..++|+|||+|+..++.+......+ +| -
T Consensus 35 ~~~~~~~~~~~~~~~~~la~~~~~~~~----------~i~~~~g~~~a~~~~~~~~~~~~~~------~g---------d 89 (382)
T 4hvk_A 35 HSYGFKAREAVQEAREKVAKLVNGGGG----------TVVFTSGATEANNLAIIGYAMRNAR------KG---------K 89 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCTTE----------EEEEESSHHHHHHHHHHHHHHHHGG------GC---------C
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCcC----------eEEEECCchHHHHHHHHHhhhhhcC------CC---------C
Confidence 333445677888899999999998653 5899999999998888765422111 22 3
Q ss_pred EEEecCCCchHHHHHHH-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 303 VAYCSDQAHSSVEKAGL-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
.|+++..+|.+...++. + .+.+++.+++++++.+|+++|+++|+++ +.+|+.+..++.+|.+.|+++|.+
T Consensus 90 ~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~- 162 (382)
T 4hvk_A 90 HILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDD------TILVSVQHANNEIGTIQPVEEISE- 162 (382)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCTT------EEEEECCSBCTTTCBBCCHHHHHH-
T ss_pred EEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhccC------ceEEEEECCCCCceeeCCHHHHHH-
Confidence 57888999999988763 3 3458999999999999999999998753 678888899999999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKG 459 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G 459 (943)
+|++||+ +|+|++++.. .+
T Consensus 163 -------------------l~~~~~~--------li~D~a~~~~-~~--------------------------------- 181 (382)
T 4hvk_A 163 -------------------VLAGKAA--------LHIDATASVG-QI--------------------------------- 181 (382)
T ss_dssp -------------------HHSSSSE--------EEEECTTTBT-TB---------------------------------
T ss_pred -------------------HHHHcCE--------EEEEhHHhcC-CC---------------------------------
Confidence 9999874 9999998754 21
Q ss_pred cccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh--hhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHH
Q psy11047 460 RLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH--RTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVI 537 (943)
Q Consensus 460 ~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~--~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tL 537 (943)
..+ ... ..+|.+++++||+++...-+.+. ......+ ++..... ......+ ......++...
T Consensus 182 --~~~-~~~-----~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~-~~~~~~~-------~~~~~~~-~~~~~~~~~~~ 244 (382)
T 4hvk_A 182 --EVD-VEK-----IGADMLTISSNDIYGPKGVGALWIRKEAKLQP-VILGGGQ-------ENGLRSG-SENVPSIVGFG 244 (382)
T ss_dssp --CCC-HHH-----HTCSEEEEESGGGTSCTTCEEEEEETTCCCCC-SSCSSCT-------GGGTSCS-CCCHHHHHHHH
T ss_pred --CCC-chh-----cCCCEEEEeHHHhcCCCceEEEEEcCccCcCc-ccccCCC-------cCccccC-CcCHHHHHHHH
Confidence 011 111 13699999999987743221110 0000111 1110000 0000000 01112222222
Q ss_pred HHH--HHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHh
Q psy11047 538 RNF--GIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 615 (943)
Q Consensus 538 r~~--G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~ 615 (943)
..+ ..+++.+..++ ..++++++.+.|.
T Consensus 245 ~al~~~~~~~~~~~~~---------------------------------------------------~~~~~~~l~~~L~ 273 (382)
T 4hvk_A 245 KAAEITAMEWREEAER---------------------------------------------------LRRLRDRIIDNVL 273 (382)
T ss_dssp HHHHHHHHHHHHHHHH---------------------------------------------------HHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHH---------------------------------------------------HHHHHHHHHHHHh
Confidence 221 12333333333 3567888999999
Q ss_pred CCCCeEEecCCC---ccEEEEEecCCChHHHHHHHHHhccCcEEEeecc---cC-----------C------CcEEEEee
Q psy11047 616 GDPRFEIPAARH---LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS---LR-----------I------QGLGRAQN 672 (943)
Q Consensus 616 ~~p~~eIl~~~~---l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~---~~-----------g------~~~lR~v~ 672 (943)
+.|++++..++. .++++|++.+.+ ...+.+.|.++|.. +.+.. .. + ..++|+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~-v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~ 350 (382)
T 4hvk_A 274 KIEESYLNGHPEKRLPNNVNVRFSYIE--GESIVLSLDMAGIQ-ASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTL 350 (382)
T ss_dssp TSTTEEECSCSSSBCTTEEEEEETTCC--HHHHHHHHHHTTCB-CBCC--------CCCHHHHHTTCCHHHHHTEEEEEC
T ss_pred cCCCeEEeCCccccCCCEEEEEECCCC--HHHHHHHHHHCCEE-EeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEc
Confidence 999999886543 478999997654 46788888888753 32210 00 0 47899999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 673 FTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 673 ~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
++.+|++|++++++.|+++.+++.+
T Consensus 351 ~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 351 GRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998776543
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-18 Score=181.77 Aligned_cols=310 Identities=13% Similarity=0.051 Sum_probs=205.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
+..++........+.+++++++|.+.+ ..++|+|||+|+..++.+.+..... +| -
T Consensus 35 ~~~~~~~~~~~~~l~~~la~~~g~~~~----------~v~~~~g~t~a~~~~~~~l~~~~~~------~g---------d 89 (382)
T 4eb5_A 35 HSYGFKAREAVQEAREKVAKLVNGGGG----------TVVFTSGATEANNLAIIGYAMRNAR------KG---------K 89 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTCTTE----------EEEEESSHHHHHHHHHHHHHHHHGG------GC---------C
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCC----------eEEEcCchHHHHHHHHHHHHhhccC------CC---------C
Confidence 333445667888899999999998643 5899999999999998876532111 22 2
Q ss_pred EEEecCCCchHHHHHHH-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 303 VAYCSDQAHSSVEKAGL-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
.|++++.+|.++..++. + .+.+++.+++++++.+|+++|+++|+.+ +.+|+.+..++.+|.+.|+++|.+
T Consensus 90 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~- 162 (382)
T 4eb5_A 90 HILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDD------TILVSVQHANNEIGTIQPVEEISE- 162 (382)
T ss_dssp EEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCTT------EEEEECCSBCTTTCBBCCHHHHHH-
T ss_pred EEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcCC------CeEEEEeccCCCccccCCHHHHHH-
Confidence 47788999999988774 3 2348899999989999999999988653 678888899999999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKG 459 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G 459 (943)
+|++||+ | ++|++|+.. ..
T Consensus 163 -------------------l~~~~~~-------~-i~D~a~~~g-~~--------------------------------- 181 (382)
T 4eb5_A 163 -------------------VLAGKAA-------L-HIDATASVG-QI--------------------------------- 181 (382)
T ss_dssp -------------------HHTTSSE-------E-EEECTTTBT-TB---------------------------------
T ss_pred -------------------HHHHCCC-------E-EEEcchhcC-Cc---------------------------------
Confidence 9999999 9 999999743 21
Q ss_pred cccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh--hhcccCccccccCCCCcccccCcccc-CCCCCc-chHHHHH
Q psy11047 460 RLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH--RTFNVEPLYLRHENSGLAIDYMHWQI-PLSKRF-RALKLWF 535 (943)
Q Consensus 460 ~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~--~af~~~p~YL~~~~~g~~~d~~~~ti-e~SRrf-rALklW~ 535 (943)
.. ..... .+|.++.++||+++...-+.+. ......+ ++.. +.. .... .++-.. ....++.
T Consensus 182 --~~-~~~~~-----~~di~~~s~sK~~g~~g~G~~~~~~~~~l~~-~~~~---~~~----~~~~~~~~~~~~~~~~~~~ 245 (382)
T 4eb5_A 182 --EV-DVEKI-----GADMLTISSNDIYGPKGVGALWIRKEAKLQP-VILG---GGQ----ENGLRSGSENVPSIVGFGK 245 (382)
T ss_dssp --CC-CHHHH-----TCSEEEEETGGGTCCSSCEEEEEETTCCCCC-SSCS---SCT----GGGTSCSCCCHHHHHHHHH
T ss_pred --cc-Ccccc-----CCCEEEeehHHhcCCCceEEEEEccccccCc-eecC---CCc----cccccCCCccHHHHHHHHH
Confidence 01 11111 3699999999997643212210 0000011 1110 000 0000 111111 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHh
Q psy11047 536 VIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 615 (943)
Q Consensus 536 tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~ 615 (943)
++..+ .+++.+.+++ ..++++++.+.|+
T Consensus 246 al~~~-~~~~~~~~~~---------------------------------------------------~~~~~~~l~~~L~ 273 (382)
T 4eb5_A 246 AAEIT-AMEWREEAER---------------------------------------------------LRRLRDRIIDNVL 273 (382)
T ss_dssp HHHHH-HHHHHHHHHH---------------------------------------------------HHHHHHHHHHHHT
T ss_pred HHHHH-HHhHHHHHHH---------------------------------------------------HHHHHHHHHHHHh
Confidence 33322 1234333333 3467888889999
Q ss_pred CCCCeEEecCC---CccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc--------------------CCCcEEEEee
Q psy11047 616 GDPRFEIPAAR---HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL--------------------RIQGLGRAQN 672 (943)
Q Consensus 616 ~~p~~eIl~~~---~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~--------------------~g~~~lR~v~ 672 (943)
+.|++++..++ ..+++.|++++.+ ...+.++|.++|.. +.+... .+..++|+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~-v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~ 350 (382)
T 4eb5_A 274 KIEESYLNGHPEKRLPNNVNVRFSYIE--GESIVLSLDMAGIQ-ASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTL 350 (382)
T ss_dssp TSTTEEECSCSSSBCTTEEEEEETTSC--HHHHHHHHHHHTCB-CBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEEC
T ss_pred hCCCeEEeCCcccCCCCEEEEEeCCcC--HHHHHHHHHHCCEE-EeccccccCCCCcccHHHHHcCCChhccCCeEEEEC
Confidence 88999987654 2678999987543 46788888777753 332110 1246999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 673 FTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 673 ~~~tt~edId~ll~~I~~~~~~ll 696 (943)
++.+++++++++++.|+++.+++.
T Consensus 351 ~~~~~~~~i~~~~~~l~~~~~~~~ 374 (382)
T 4eb5_A 351 GRYNTDEDVDRLLEVLPGVIERLR 374 (382)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876543
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=190.40 Aligned_cols=343 Identities=10% Similarity=-0.040 Sum_probs=218.9
Q ss_pred CCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChH
Q psy11047 189 WQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTAS 268 (943)
Q Consensus 189 ~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGT 268 (943)
..+|.++-+.+++...+..+.+.+. ++... ..+|....+...+.+++++++|.+.. ...++|+|||
T Consensus 9 ~~~~~~~~~~pgp~~~~~~v~~a~~---~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~---------~~v~~~~sgt 74 (411)
T 3nnk_A 9 LNPPSRLLMGPGPINADPRVLRAMS---SQLIG--QYDPAMTHYMNEVMALYRGVFRTENR---------WTMLVDGTSR 74 (411)
T ss_dssp CCCCCCEEESSSCCCCCHHHHHHHT---SCCCC--TTCHHHHHHHHHHHHHHHHHHTCCCS---------EEEEEESCHH
T ss_pred cCCccceeecCCCCCCCHHHHHHhh---ccccc--cccHHHHHHHHHHHHHHHHHhCCCCC---------cEEEECCCcH
Confidence 4577777777777654433333322 22211 23677778888999999999999754 1368899999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH--HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHH
Q psy11047 269 ESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS--VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIE 346 (943)
Q Consensus 269 eANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS--v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~ 346 (943)
+|+..++.+.. .+| -.|+++..+|++ +..++...+.+++.++.+.++.+|+++|+++|+
T Consensus 75 ~al~~~~~~~~----------~~g---------d~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~ 135 (411)
T 3nnk_A 75 AGIEAILVSAI----------RPG---------DKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVK 135 (411)
T ss_dssp HHHHHHHHHHC----------CTT---------CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhc----------CCC---------CEEEEecCCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHh
Confidence 99988877541 122 246778889988 666665444589999999999999999999998
Q ss_pred HhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcc
Q psy11047 347 RDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 426 (943)
Q Consensus 347 ~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~af 426 (943)
+. .+.+|+.+..++.+|.+.|+++|++ +|++||+ |+|+|++++.. ..
T Consensus 136 ~~-----~~~~v~~~~~~nptG~~~~l~~i~~--------------------l~~~~~~-------~li~Dea~~~~-~~ 182 (411)
T 3nnk_A 136 RI-----RPRLLLTVQGDTSTTMLQPLAELGE--------------------ICRRYDA-------LFYTDATASLG-GN 182 (411)
T ss_dssp HH-----CCSEEEEESEETTTTEECCCTTHHH--------------------HHHHHTC-------EEEEECTTTBT-TB
T ss_pred hC-----CCeEEEEeCCCCCcceeccHHHHHH--------------------HHHHcCC-------EEEEECCcccC-Cc
Confidence 63 2668888889999999999999999 9999999 99999998654 21
Q ss_pred ccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC--------ccCcchhhhh
Q psy11047 427 EIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR--------VKNSGALHRT 498 (943)
Q Consensus 427 eLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~--------vr~~~~L~~a 498 (943)
+ .. .. . ..+|.+++++|||++ +-++..+ +.
T Consensus 183 --~---------------------------------~~-~~----~-~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~-~~ 220 (411)
T 3nnk_A 183 --P---------------------------------LE-TD----V-WGLDAVSAGMQKCLGGPSGTSPITLSARME-EA 220 (411)
T ss_dssp --C---------------------------------CC-TT----T-TTCSEEECCSTTTTCCCSSEEEEEECHHHH-HH
T ss_pred --c---------------------------------cc-hh----c-cCCcEEEecCccccCCCCceEEEEECHHHH-HH
Confidence 0 00 11 1 147999999999865 1111111 11
Q ss_pred cc----cCccccccCCCCcc-cccCcc--------------cc-CCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy11047 499 FN----VEPLYLRHENSGLA-IDYMHW--------------QI-PLSKR-FRALKLWFVIRNFGIKGLQKHIREIFSGLA 557 (943)
Q Consensus 499 f~----~~p~YL~~~~~g~~-~d~~~~--------------ti-e~SRr-frALklW~tLr~~G~~Gl~~~I~~~l~~~~ 557 (943)
+. ..+.|.+....|.. .....+ .. .++.. .....++.+++.+...|+.+.+++
T Consensus 221 ~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~------ 294 (411)
T 3nnk_A 221 IRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIAR------ 294 (411)
T ss_dssp HHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHH------
T ss_pred HhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHH------
Confidence 11 11222221111100 000000 00 11111 112233444554444445544444
Q ss_pred CccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC---CccEEEEE
Q psy11047 558 LPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR---HLGMVVIR 634 (943)
Q Consensus 558 ~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~---~l~iV~Fr 634 (943)
..++++++.+.|++. ++++..++ ..++++|+
T Consensus 295 ---------------------------------------------~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 328 (411)
T 3nnk_A 295 ---------------------------------------------HKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVV 328 (411)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEE
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEE
Confidence 245677777777765 77776544 36788998
Q ss_pred ec-CCChHHHHHHHHHhcc-CcEEEeec-ccCCCcEEEEee-cCCCCHHHHHHHHHHHHHHHHH
Q psy11047 635 LL-GENILTEKLLKRLNSK-GRLHCVPA-SLRIQGLGRAQN-FTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 635 ~~-g~n~l~~~Ll~~L~~~-G~~~~s~t-~~~g~~~lR~v~-~~~tt~edId~ll~~I~~~~~~ 694 (943)
++ +.+ ..++.++|.++ |. .+.+. ......++|+++ ++.++++||+++++.|+++.++
T Consensus 329 ~~~~~~--~~~l~~~l~~~~gi-~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~ 389 (411)
T 3nnk_A 329 IPQGIN--GDQARKLMLEDFGI-EIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNY 389 (411)
T ss_dssp CCTTCC--HHHHHHHHHHHHSE-EEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC--HHHHHHHHHHhcCe-EEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHH
Confidence 85 333 46788888776 75 44432 122356999975 7788999999999999987654
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-18 Score=186.79 Aligned_cols=332 Identities=11% Similarity=-0.014 Sum_probs=213.5
Q ss_pred eeEEccCCCC-hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHH
Q psy11047 194 MHAYFPALNS-YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTL 272 (943)
Q Consensus 194 f~g~~~~~~s-~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL 272 (943)
++.+.+++.. ++.++..+.....++.......+|...++...+.+++++++|.++. ...++|+|||+|+.
T Consensus 5 ~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~---------~~v~~~~g~t~al~ 75 (362)
T 3ffr_A 5 KIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSN---------YEVLFLASATEIWE 75 (362)
T ss_dssp CEEECSSSCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTT---------EEEEEESCHHHHHH
T ss_pred ceeccCCCcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCC---------cEEEEeCCchHHHH
Confidence 3455565544 3455544444444544223345788888889999999999999643 26899999999998
Q ss_pred HHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH--HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhc
Q psy11047 273 ICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV--EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKK 350 (943)
Q Consensus 273 ~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv--~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~ 350 (943)
.++.+.. .+ .+++....||+. ...+...+.+++.++.+.++.+|+++|+ +..
T Consensus 76 ~~~~~l~-------------------~~--~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~~--- 129 (362)
T 3ffr_A 76 RIIQNCV-------------------EK--KSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT--VPA--- 129 (362)
T ss_dssp HHHHHHC-------------------SS--EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CCT---
T ss_pred HHHHhcc-------------------CC--cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh--ccC---
Confidence 8876421 01 244455677772 2233344458899999888999999988 222
Q ss_pred cCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHc-CCCCCccchhhhHHhhhcCCCccccc
Q psy11047 351 KHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSY-FPKFQSVRLAQKFEALVLGDPRFEIP 429 (943)
Q Consensus 351 kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~-Gl~~~~l~lwLHVDAA~GG~~afeLp 429 (943)
.+.+|+.+..++.+|.+.|+++|++ +|++| |+ |+++|++++.. ..
T Consensus 130 ---~~~~v~~~~~~nptG~~~~l~~i~~--------------------la~~~p~~-------~li~D~a~~~~-~~--- 175 (362)
T 3ffr_A 130 ---DAEIICLTHNETSSGVSMPVEDINT--------------------FRDKNKDA-------LIFVDAVSSLP-YP--- 175 (362)
T ss_dssp ---TCCEEEEESEETTTTEECCHHHHTT--------------------SGGGSTTS-------EEEEECTTTTT-SS---
T ss_pred ---CccEEEEEcCCCCcceeCCHHHHHH--------------------HHHhCCCC-------EEEEecccccC-Cc---
Confidence 2678888889999999999999999 99999 99 99999998754 21
Q ss_pred cccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC-ccCcchh------hhhcccC
Q psy11047 430 AARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR-VKNSGAL------HRTFNVE 502 (943)
Q Consensus 430 ~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-vr~~~~L------~~af~~~ 502 (943)
..+ +..+|.++.++|||++ ...-..+ .+.+.
T Consensus 176 --------------------------------~~~--------~~~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~-- 213 (362)
T 3ffr_A 176 --------------------------------KFD--------WTKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSK-- 213 (362)
T ss_dssp --------------------------------CCC--------TTSCSEEEEETTSTTCCCSCCEEEEEEHHHHHHHH--
T ss_pred --------------------------------ccC--------hhHCcEEEEecccccCCCCceEEEEECHHHHHHhh--
Confidence 000 1227999999999998 2221111 00000
Q ss_pred ccccccCC-CCcccccCc-------cccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchh
Q psy11047 503 PLYLRHEN-SGLAIDYMH-------WQIPLSKR-FRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTA 573 (943)
Q Consensus 503 p~YL~~~~-~g~~~d~~~-------~tie~SRr-frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~ 573 (943)
.+..+++ .+...++.. ....++-. +....++.+++.+...|+.+.+++
T Consensus 214 -~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~---------------------- 270 (362)
T 3ffr_A 214 -ALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQ---------------------- 270 (362)
T ss_dssp -HHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHH----------------------
T ss_pred -hccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHH----------------------
Confidence 0000000 000000000 00011111 122234444554444454444444
Q ss_pred hhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC----CCccEEEEEecCCChHHHHHHHHH
Q psy11047 574 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA----RHLGMVVIRLLGENILTEKLLKRL 649 (943)
Q Consensus 574 ~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~----~~l~iV~Fr~~g~n~l~~~Ll~~L 649 (943)
..++++++.+.|++.|++++..+ ....+++|++.+ ...++.++|
T Consensus 271 -----------------------------~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l 318 (362)
T 3ffr_A 271 -----------------------------TEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM---LPGEINKIL 318 (362)
T ss_dssp -----------------------------HHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS---CHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC---CHHHHHHHH
Confidence 35678888999999999999762 246788898876 357899999
Q ss_pred hccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 650 NSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 650 ~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
.++|..........+.+++|++++..++++||+++++.|+++
T Consensus 319 ~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~ 360 (362)
T 3ffr_A 319 EPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEK 360 (362)
T ss_dssp GGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 988754432222234679999998999999999999999875
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=189.71 Aligned_cols=344 Identities=10% Similarity=0.009 Sum_probs=213.6
Q ss_pred CCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcE-EEcC
Q psy11047 187 THWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGG-VLQT 265 (943)
Q Consensus 187 ~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~G-vfTs 265 (943)
....+|.++-+.+++...+..+.+.+. +.. ....++....+...+.+++++++|.+.. .. ++|+
T Consensus 5 ~~~~~~~~~~~~p~p~~~~~~v~~a~~---~~~--~~~~~~~~~~~~~~l~~~la~~~g~~~~----------~~~~~~~ 69 (416)
T 3isl_A 5 RELCTPLRTIMTPGPVEVDPRVLRVMS---TPV--VGQFDPAFTGIMNETMEMLRELFQTKNR----------WAYPIDG 69 (416)
T ss_dssp CCCCCCCCEECSSSSCCCCHHHHHHTT---SCC--CCTTSHHHHHHHHHHHHHHHHHTTCCCS----------EEEEEES
T ss_pred cccCcccceeecCCCcCcCHHHHHHhc---ccC--CCCccHHHHHHHHHHHHHHHHHhCCCCC----------cEEEecC
Confidence 334566776666666544333332222 221 2234466678888999999999998754 34 4899
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH--HHHHHHHCCccEEEEecCCCCCcCHHHHHH
Q psy11047 266 TASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS--VEKAGLIGLVNMRYIESDDKLSLRGDKLIE 343 (943)
Q Consensus 266 GGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS--v~KAa~LG~~~v~~Vp~D~~grmD~daLe~ 343 (943)
|||+|+..++.+. + .+| -.|++++.+|++ +.+++...+.+++.++.+.++.+|+++|++
T Consensus 70 s~t~al~~~~~~l----~------~~g---------d~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~ 130 (416)
T 3isl_A 70 TSRAGIEAVLASV----I------EPE---------DDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIR 130 (416)
T ss_dssp CHHHHHHHHHHHH----C------CTT---------CEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHH
T ss_pred cHHHHHHHHHHHh----c------CCC---------CEEEEecCCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHH
Confidence 9999998876643 1 122 246677789998 666665544589999999999999999999
Q ss_pred HHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 344 AIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 344 aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++.. +.+|+.+..++.+|.+.|+++|.+ +|++||+ |+++|++++..
T Consensus 131 ~i~~~~-----~~~v~~~~~~nptG~~~~l~~i~~--------------------l~~~~~~-------~li~D~a~~~~ 178 (416)
T 3isl_A 131 EIKKVK-----PKIVAMVHGETSTGRIHPLKAIGE--------------------ACRTEDA-------LFIVDAVATIG 178 (416)
T ss_dssp HHHHHC-----CSEEEEESEETTTTEECCCHHHHH--------------------HHHHTTC-------EEEEECTTTTT
T ss_pred HHhhCC-----CcEEEEEccCCCCceecCHHHHHH--------------------HHHHcCC-------EEEEECCcccc
Confidence 998531 568888899999999999999999 9999999 99999998754
Q ss_pred CccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC-c-------cCcchh
Q psy11047 424 PRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR-V-------KNSGAL 495 (943)
Q Consensus 424 ~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-v-------r~~~~L 495 (943)
.+ + .+ .. . ..+|.+++++|||++ . -++..+
T Consensus 179 -~~--~---------------------------------~~-~~----~-~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~ 216 (416)
T 3isl_A 179 -GC--E---------------------------------VK-VD----E-WKIDAAIGGTQKCLSVPSGMAPITYNERVA 216 (416)
T ss_dssp -TS--C---------------------------------CC-TT----T-TTCSEEECCSSSTTCCCSSEEEEEECHHHH
T ss_pred -CC--C---------------------------------cc-hh----h-cCCCEEEecCccccCCCCCeEEEEECHHHH
Confidence 21 0 00 10 1 147999999999865 1 111111
Q ss_pred hhhcccC------------ccccccCCC--Cccccc-------Ccccc-CCCCC-cchHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 496 HRTFNVE------------PLYLRHENS--GLAIDY-------MHWQI-PLSKR-FRALKLWFVIRNFGIKGLQKHIREI 552 (943)
Q Consensus 496 ~~af~~~------------p~YL~~~~~--g~~~d~-------~~~ti-e~SRr-frALklW~tLr~~G~~Gl~~~I~~~ 552 (943)
+.+... .++...+.. ....+. ....+ .++.. .....++.++..+...|+.+..++
T Consensus 217 -~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~- 294 (416)
T 3isl_A 217 -DVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFER- 294 (416)
T ss_dssp -HHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHH-
T ss_pred -HHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHH-
Confidence 111100 001100000 000000 00011 11111 122334445555544445555444
Q ss_pred HhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCC---cc
Q psy11047 553 FSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH---LG 629 (943)
Q Consensus 553 l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~---l~ 629 (943)
..++++++.+.|.+. ++++..++. .+
T Consensus 295 --------------------------------------------------~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 323 (416)
T 3isl_A 295 --------------------------------------------------HRHHEAALAAGIKAM-GLRLFGDDSCKMPV 323 (416)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHT-TCCBCSCGGGBCTT
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHc-CCEeccCccccCCc
Confidence 245677888888774 888876543 57
Q ss_pred EEEEEec-CCChHHHHHHHHHhcc-CcEEEeecc-cCCCcEEEEeecCCCCH-HHHHHHHHHHHHHHHH
Q psy11047 630 MVVIRLL-GENILTEKLLKRLNSK-GRLHCVPAS-LRIQGLGRAQNFTRTTN-DDITRDWNEIRNTATE 694 (943)
Q Consensus 630 iV~Fr~~-g~n~l~~~Ll~~L~~~-G~~~~s~t~-~~g~~~lR~v~~~~tt~-edId~ll~~I~~~~~~ 694 (943)
+++|++. +.+ ..++.++|.++ |. .+.+.. .....++|++++..++. ++|+++++.|+++..+
T Consensus 324 ~~~~~~~~~~~--~~~l~~~L~~~~gi-~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~ 389 (416)
T 3isl_A 324 VTCVEIPGGID--GESVRDMLLAQFGI-EIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLR 389 (416)
T ss_dssp EEEEECCTTCC--HHHHHHHHHHHHCE-ECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCC--HHHHHHHHHHhCCE-EEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHH
Confidence 8899985 333 56788888776 74 444322 12457999977555444 4499999999887654
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-19 Score=201.63 Aligned_cols=318 Identities=11% Similarity=0.031 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
..-|..+++||+++ |+|.. +...++.|+|.+++..++++-... .|+ + ..|+++..
T Consensus 116 ~ltn~l~ld~L~~~-G~~~~---------~~~flVnGsTgg~lamilaa~r~~-------rpg-------~-d~VIvpRn 170 (501)
T 3hl2_A 116 KITNSLVLDIIKLA-GVHTV---------ANCFVVPMATGMSLTLCFLTLRHK-------RPK-------A-KYIIWPRI 170 (501)
T ss_dssp HHHHHHHHHHHHHT-TCTTC---------CEEEEESSCHHHHHHHHHHHHHHH-------CTT-------C-CEEEEECC
T ss_pred HHHHHHHHHHHHHc-CCCCC---------CcEEEECcHHHHHHHHHHHHcCcc-------cCC-------C-CEEEEecc
Confidence 34567899999999 99975 468999999977666655543211 111 1 23566999
Q ss_pred CchHHHHHHHHCCccEEEEec---CCCCCcCHHHHHHHHHHhhccCCCcEEEEEe-cCCCcccccccHHHhhhhcccccc
Q psy11047 310 AHSSVEKAGLIGLVNMRYIES---DDKLSLRGDKLIEAIERDKKKHLIPFFIFSG-LALPAFLVVDSYCCLGTAMIVKGL 385 (943)
Q Consensus 310 aHySv~KAa~LG~~~v~~Vp~---D~~grmD~daLe~aI~~d~~kG~~P~~VVaT-aGTT~tGaIDpL~eIa~~~~~~d~ 385 (943)
+|.|+.||+.+.+...++|++ ++...||+++++++|++...+ ..+++++ ..+...+.+|||++|++
T Consensus 171 ~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~---~i~~V~~Ttt~y~p~~~ddI~eIae------- 240 (501)
T 3hl2_A 171 DQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPD---CILCIHSTTSCFAPRVPDRLEELAV------- 240 (501)
T ss_dssp CCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHHCGG---GEEEEEEECSCCTTBCCCCHHHHHH-------
T ss_pred hHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhcCCC---cEEEEEecCCCCCCcccccHHHHHH-------
Confidence 999999999764446666654 457899999999999986322 3344443 33333457799999999
Q ss_pred ccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccc
Q psy11047 386 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP 465 (943)
Q Consensus 386 ~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~ 465 (943)
+|++||+ |+|||.|||+...+ ... .+.
T Consensus 241 -------------Ich~~gI-------pllVDeAhGah~~~---------------------~~~------------lp~ 267 (501)
T 3hl2_A 241 -------------ICANYDI-------PHIVNNAYGVQSSK---------------------CMH------------LIQ 267 (501)
T ss_dssp -------------HHHHHTC-------CEEEECTTCTTCHH---------------------HHH------------HHH
T ss_pred -------------HHHHcCC-------eEEEeCcchhhhhh---------------------hhh------------hHH
Confidence 9999999 99999999987222 000 111
Q ss_pred hhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCC-CcchHHHHHHHHHHHHHH
Q psy11047 466 ASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSK-RFRALKLWFVIRNFGIKG 544 (943)
Q Consensus 466 ~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SR-rfrALklW~tLr~~G~~G 544 (943)
..++ +.+||.++.|+||++.++-+..+. +..+..++..- ....+|.+ .+.++++|++++.+|.+|
T Consensus 268 --sA~~-~GrAD~vVqS~HK~llvpIGG~ii--~~~d~e~l~~~---------~~~yPGr~S~Spsldl~~tLL~lGr~G 333 (501)
T 3hl2_A 268 --QGAR-VGRIDAFVQSLDKNFMVPVGGAII--AGFNDSFIQEI---------SKMYPGRASASPSLDVLITLLSLGSNG 333 (501)
T ss_dssp --HHHH-HSCCCEEEEEHHHHHCCCSSCEEE--EESCHHHHHHH---------HHTSCSCBCSHHHHHHHHHHHHHHHHH
T ss_pred --HHHh-cCCCcEEEecccccceeecCceEE--EeCCHHHHHHH---------HHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 1111 125999999999999954332221 00111122110 00112333 467889999999999999
Q ss_pred HHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCC---CCeE
Q psy11047 545 LQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD---PRFE 621 (943)
Q Consensus 545 l~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~---p~~e 621 (943)
|++++++.+ +++++|.+.|+++ -+-+
T Consensus 334 y~~ll~e~~---------------------------------------------------ela~~L~~~L~~la~~~ge~ 362 (501)
T 3hl2_A 334 YKKLLKERK---------------------------------------------------EMFSYLSNQIKKLSEAYNER 362 (501)
T ss_dssp HHHHHHHHH---------------------------------------------------HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHH---------------------------------------------------HHHHHHHHHHHHHHHhcChh
Confidence 999999943 4555555555543 2345
Q ss_pred EecCCCcc-EEEEEecCCC----hHHHHHHHHHhc---cCcEEEeecc--------------c-CC--CcEEEEeecCCC
Q psy11047 622 IPAARHLG-MVVIRLLGEN----ILTEKLLKRLNS---KGRLHCVPAS--------------L-RI--QGLGRAQNFTRT 676 (943)
Q Consensus 622 Il~~~~l~-iV~Fr~~g~n----~l~~~Ll~~L~~---~G~~~~s~t~--------------~-~g--~~~lR~v~~~~t 676 (943)
++..+.-. -+++.+.... .....|-..|-. .|--.+.+.. + .. ..++=+.+..-+
T Consensus 363 ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~ 442 (501)
T 3hl2_A 363 LLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGM 442 (501)
T ss_dssp BCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTC
T ss_pred hcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCC
Confidence 66544222 2344554321 112233333333 2332332210 1 11 236777788899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Q psy11047 677 TNDDITRDWNEIRNTATEILAELA 700 (943)
Q Consensus 677 t~edId~ll~~I~~~~~~ll~~~~ 700 (943)
+.+||+.+++.++++..++.++..
T Consensus 443 ~~~~v~~~~~~l~~~~~~~~~~~~ 466 (501)
T 3hl2_A 443 KMQDVDLFIKRLDRCLKAVRKERS 466 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999887766544
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-17 Score=187.62 Aligned_cols=360 Identities=13% Similarity=0.036 Sum_probs=227.8
Q ss_pred ChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCC---ChHHHHHHHH--HHHHhcc-CccccC
Q psy11047 152 KPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALN---SYPSLLGDML--SDAINCL-GFTWAS 225 (943)
Q Consensus 152 ~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~---s~~silgd~L--~~alN~n-~~~~~~ 225 (943)
-|..++.. +..+| +|.+..++++++.....++.. +|..|...+. ..|..+.+++ ...+... ....+.
T Consensus 30 ~p~~~~~~-~~~lp-~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~ 102 (438)
T 1wyu_A 30 LPKEILSP-PIDLP-EPLPEWKVLEELRRLAAQNLP-----AHKAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEV 102 (438)
T ss_dssp SCGGGSSC-CCCCC-CCCCHHHHHHHHHHHHHTSCC-----CTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGG
T ss_pred CcHHHhcC-CCCCC-CCCCHHHHHHHHHHHHhcCcC-----ccccccCCCccCCcCcHHHHHHHhcchhhhcCCCCcchh
Confidence 36677766 77899 889999999998876543321 1222222221 1234444444 3333322 112246
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
++...+++.++.+++++++|.+.. .+++|+|||.++..++++.+ .. +| ..|+
T Consensus 103 ~~g~~~~~~~~~~~la~~~g~~~~----------~i~~~~g~taa~ea~~~a~~---~~------~g---------d~Vi 154 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAGLEIA----------NASMYDGATALAEGVLLALR---ET------GR---------MGVL 154 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSEE----------CSCBSSHHHHHHHHHHHHHH---HH------TC---------CEEE
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcc----------ceEEeCcHHHHHHHHHHHHh---cC------CC---------CEEE
Confidence 788889999999999999999753 46899999944322222222 11 12 2477
Q ss_pred ecCCCchHHHHHHH----HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 306 CSDQAHSSVEKAGL----IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 306 ~S~~aHySv~KAa~----LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
+++.+|.|...++. ..+.+++.|++ +++.+|+++ |+. .+.+|+.+.. +.+|.++|+++|++
T Consensus 155 v~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~~------~t~~v~i~~p-n~tG~~~~l~~i~~--- 219 (438)
T 1wyu_A 155 VSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VGE------EVGAVVVQNP-NFLGALEDLGPFAE--- 219 (438)
T ss_dssp EETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CCT------TEEEEEEESS-CTTSBCCCHHHHHH---
T ss_pred EcCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hCC------CeEEEEEECC-CCCeEEecHHHHHH---
Confidence 89999999886652 23458888887 568888776 332 2778888886 99999999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhh---hcCCCccccccccccceeeeeecchhhhHHHHHHHhhcc
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL---VLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK 458 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA---~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~ 458 (943)
+|+++|+ |+|+|+. +|..
T Consensus 220 -----------------la~~~g~-------~vivd~d~~a~g~~----------------------------------- 240 (438)
T 1wyu_A 220 -----------------AAHGAGA-------LFVAVADPLSLGVL----------------------------------- 240 (438)
T ss_dssp -----------------HHHHTTC-------EEEEECCTTGGGTB-----------------------------------
T ss_pred -----------------HHHHcCC-------EEEEEechhhccCc-----------------------------------
Confidence 9999999 9995533 4322
Q ss_pred CcccccchhhhhcCCCCeeEEEEcCCC-----ccCccCcc------hhhhhcccCccccccCC---CCcccccCcccc--
Q psy11047 459 GRLHCVPASLRIQGLGRAQNFTIVPSS-----LLRVKNSG------ALHRTFNVEPLYLRHEN---SGLAIDYMHWQI-- 522 (943)
Q Consensus 459 G~~~~p~~r~~l~Gie~ADSItiDpHK-----~L~vr~~~------~L~~af~~~p~YL~~~~---~g~~~d~~~~ti-- 522 (943)
..+ .. ..+|.++++.|| |++-...+ .+.+. -+.++.... .+. ..|.+
T Consensus 241 ---~~~--~~-----~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~---l~~~~~g~~~~~~~~----~~~~~~l 303 (438)
T 1wyu_A 241 ---KPP--GA-----YGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQ---LPGRLVSETVDVEGR----RGFILTL 303 (438)
T ss_dssp ---CCH--HH-----HTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGG---CCSCCEEEEEBTTSC----EEEEECC
T ss_pred ---CCC--cc-----CCCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHh---CCCceeccccccCCC----cceeeec
Confidence 011 11 147999999888 33311111 11111 112221100 000 00100
Q ss_pred ----------CCCCCc------chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccc
Q psy11047 523 ----------PLSKRF------RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKL 586 (943)
Q Consensus 523 ----------e~SRrf------rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~ 586 (943)
.++... .++..|+.+..+|.+|+.+..++
T Consensus 304 ~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~----------------------------------- 348 (438)
T 1wyu_A 304 QAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALK----------------------------------- 348 (438)
T ss_dssp GGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred cccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHH-----------------------------------
Confidence 011111 12333444788888888877776
Q ss_pred cCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEE-EeecccCC
Q psy11047 587 QTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLH-CVPASLRI 664 (943)
Q Consensus 587 ~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~-~s~t~~~g 664 (943)
..++++++.+.|++.|++++..+ +.+++++|+.. . ....+.++|.++|... +.+....+
T Consensus 349 ----------------~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~-~--~~~~~~~~L~~~gi~v~~~~~~~~~ 409 (438)
T 1wyu_A 349 ----------------SVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP-K--DPEAVRRALAERGFHGATPVPREYG 409 (438)
T ss_dssp ----------------HHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS-S--CHHHHHHHHHHTTCCCCEECCTTSC
T ss_pred ----------------HHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCC-C--CHHHHHHHHHHCCceeccccccccC
Confidence 35678899999999999999876 45677788763 2 2578888888888643 13333334
Q ss_pred CcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 665 QGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 665 ~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
..++|+++++.+|++||+++++.|+++
T Consensus 410 ~~~lRis~~~~~t~edi~~~~~~l~~~ 436 (438)
T 1wyu_A 410 ENLALFAATELHEEEDLLALREALKEV 436 (438)
T ss_dssp SSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEecccCCHHHHHHHHHHHHHH
Confidence 679999888999999999999998765
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-17 Score=183.37 Aligned_cols=311 Identities=12% Similarity=0.060 Sum_probs=202.5
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
+.....+...+.+++++++|.+.+ ..+||+|||+|+..++.+.++... .+ ...|+
T Consensus 63 ~~~~~~~~~~l~~~la~~~~~~~~----------~v~~~~ggt~a~~~a~~~l~~~~~------~~---------gd~Vl 117 (423)
T 3lvm_A 63 GWQAEEAVDIARNQIADLVGADPR----------EIVFTSGATESDNLAIKGAANFYQ------KK---------GKHII 117 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGG----------GEEEESSHHHHHHHHHHHHHHHHT------TT---------CCEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCC----------eEEEeCChHHHHHHHHHHHHHhhc------cC---------CCEEE
Confidence 344567777899999999999754 689999999999999887654321 11 23578
Q ss_pred ecCCCchHHHHHHH-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 306 CSDQAHSSVEKAGL-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 306 ~S~~aHySv~KAa~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
++..+|.+...++. + .+.+++.++.+.++.+|+++|+++|+++ +.+|+.+...+.+|.+.|+++|.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~---- 187 (423)
T 3lvm_A 118 TSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDD------TILVSIMHVNNEIGVVQDIAAIGE---- 187 (423)
T ss_dssp EETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTT------EEEEECCSBCTTTCBBCCHHHHHH----
T ss_pred ECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCC------cEEEEEeCCCCCCccccCHHHHHH----
Confidence 88999999988772 3 3458899999999999999999998754 678888888899999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+|++||+ |+++|+++++. .+ +
T Consensus 188 ----------------l~~~~~~-------~li~Dea~~~~-~~--~--------------------------------- 208 (423)
T 3lvm_A 188 ----------------MCRARGI-------IYHVDATQSVG-KL--P--------------------------------- 208 (423)
T ss_dssp ----------------HHHHHTC-------EEEEECTTTTT-TS--C---------------------------------
T ss_pred ----------------HHHHcCC-------EEEEEhhhhcC-CC--C---------------------------------
Confidence 9999999 99999999765 22 0
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCc-chHHHHHHHHHHH
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF-RALKLWFVIRNFG 541 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf-rALklW~tLr~~G 541 (943)
.. +... .+|.+++++||+++...-+.+.-. ......+.....+..... .+. .++-.. ....+..+++.+.
T Consensus 209 ~~-----~~~~-~~di~~~s~sK~~g~~g~G~~~~~-~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~a~~~al~~~~ 279 (423)
T 3lvm_A 209 ID-----LSQL-KVDLMSFSGHKIYGPKGIGALYVR-RKPRVRIEAQMHGGGHER-GMR-SGTLPVHQIVGMGEAYRIAK 279 (423)
T ss_dssp CC-----TTTS-CCSEEEEESTTTTSCSSCEEEEEC-BTTBCCCCCSSCSSCTTT-TTC-CSCCCHHHHHHHHHHHHHHH
T ss_pred cC-----hhhc-CCCEEEechHHhcCCCCeEEEEEe-ccccCCCCccccCCcccc-ccc-CCCCCHHHHHHHHHHHHHHH
Confidence 00 0111 479999999997763221111000 000000100000000000 000 111111 1111112222221
Q ss_pred HHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeE
Q psy11047 542 IKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 621 (943)
Q Consensus 542 ~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~e 621 (943)
..+.+.+++ ..++++++.+.|++.|+++
T Consensus 280 -~~~~~~~~~---------------------------------------------------~~~~~~~l~~~L~~~~~~~ 307 (423)
T 3lvm_A 280 -EEMATEMER---------------------------------------------------LRGLRNRLWNGIKDIEEVY 307 (423)
T ss_dssp -HHHHHHHHH---------------------------------------------------HHHHHHHHHHHHTTSTTEE
T ss_pred -HHHHHHHHH---------------------------------------------------HHHHHHHHHHHHhcCCCEE
Confidence 112222222 3567888999999999999
Q ss_pred EecCCC---ccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc-----------------C---CCcEEEEeecCCCCH
Q psy11047 622 IPAARH---LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL-----------------R---IQGLGRAQNFTRTTN 678 (943)
Q Consensus 622 Il~~~~---l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~-----------------~---g~~~lR~v~~~~tt~ 678 (943)
+..++. .++++|++.+.+ ...+.+.|.+ +.+.+... . ...++|++++..+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~ 382 (423)
T 3lvm_A 308 LNGDLEHGAPNILNVSFNYVE--GESLIMALKD---LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTE 382 (423)
T ss_dssp EESCSTTBCTTEEEEEETTSC--HHHHHHHTTT---EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCH
T ss_pred EeCCccccCCCeEEEEeCCCC--HHHHHHHHhh---heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCH
Confidence 987653 578999986544 4566666655 33332110 0 147899998899999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11047 679 DDITRDWNEIRNTATEIL 696 (943)
Q Consensus 679 edId~ll~~I~~~~~~ll 696 (943)
+||+++++.|+++..++.
T Consensus 383 e~i~~~~~~l~~~~~~~~ 400 (423)
T 3lvm_A 383 EEIDYTIELVRKSIGRLR 400 (423)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999877654
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-17 Score=179.99 Aligned_cols=309 Identities=11% Similarity=0.074 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHHHhCC-CccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec
Q psy11047 229 CTELEIITMNWLGKMIGL-PEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~-p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S 307 (943)
.......+.+++++++|. +.+ ..++|+|||+|+..++.+.+...+ .+| -.|+++
T Consensus 70 ~~~~~~~l~~~la~~~~~~~~~----------~v~~~~g~t~a~~~~~~~~~~~~~------~~g---------d~Vl~~ 124 (420)
T 1t3i_A 70 ATDAYEAVRNKVAKFINARSPR----------EIVYTRNATEAINLVAYSWGMNNL------KAG---------DEIITT 124 (420)
T ss_dssp HHHHHHHHHHHHHHHTTCSCGG----------GEEEESSHHHHHHHHHHHTHHHHC------CTT---------CEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCC----------eEEEcCChHHHHHHHHHHhhhccc------CCC---------CEEEEC
Confidence 345566788999999998 332 689999999999999887642111 122 247778
Q ss_pred CCCchH----HHHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 308 DQAHSS----VEKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 308 ~~aHyS----v~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
+.+|++ +..++. .|. +++.++.++++.+|+++|+++|+.+ +.+|+.+..++.+|.+.|+++|.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~-~~~~v~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~~---- 193 (420)
T 1t3i_A 125 VMEHHSNLVPWQMVAAKTGA-VLKFVQLDEQESFDLEHFKTLLSEK------TKLVTVVHISNTLGCVNPAEEIAQ---- 193 (420)
T ss_dssp TTCCGGGTHHHHHHHHHHCC-EEEEECBCTTSSBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHH----
T ss_pred cchhHHHHHHHHHHHHhcCc-EEEEeccCCCCCcCHHHHHHhhCCC------ceEEEEeCCcccccCcCCHHHHHH----
Confidence 889988 445553 454 7889999889999999999998653 678888999999999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+|++||+ |+++|++++.+ .. .
T Consensus 194 ----------------l~~~~~~-------~li~D~a~~~~-~~-----------------------------------~ 214 (420)
T 1t3i_A 194 ----------------LAHQAGA-------KVLVDACQSAP-HY-----------------------------------P 214 (420)
T ss_dssp ----------------HHHHTTC-------EEEEECTTTTT-TS-----------------------------------C
T ss_pred ----------------HHHHcCC-------EEEEEhhhccC-Cc-----------------------------------c
Confidence 9999999 99999999755 21 0
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccCccCcch------hhhhcccCccccccCCCCcc--ccc-----CccccC-CCCCc
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLRVKNSGA------LHRTFNVEPLYLRHENSGLA--IDY-----MHWQIP-LSKRF 528 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~------L~~af~~~p~YL~~~~~g~~--~d~-----~~~tie-~SRrf 528 (943)
. ..... .+|.+++++||.++....+. +...+. + +..+...... .+. ..+.+. ++...
T Consensus 215 ~-~~~~~-----~~di~~~s~sK~~~~~g~G~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (420)
T 1t3i_A 215 L-DVQLI-----DCDWLVASGHKMCAPTGIGFLYGKEEILEAMP--P-FFGGGEMIAEVFFDHFTTGELPHKFEAGTPAI 285 (420)
T ss_dssp C-CHHHH-----TCSEEEEEGGGTTSCTTCEEEEECHHHHHHSC--C-CSCSTTSEEEECSSCEEECCTTGGGCCSSCCH
T ss_pred C-chhhc-----CCCEEEEehhhhcCCCceEEEEEchHHHhhcC--c-eecCCCccccccccccCCCCchhhccCCCccH
Confidence 0 11111 36999999999766322111 111111 0 1100000000 000 001111 11111
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHH
Q psy11047 529 -RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 607 (943)
Q Consensus 529 -rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA 607 (943)
.++.++.+++.+...++.+..++ ..+++
T Consensus 286 ~~~~a~~~al~~~~~~~~~~~~~~---------------------------------------------------~~~~~ 314 (420)
T 1t3i_A 286 AEAIALGAAVDYLTDLGMENIHNY---------------------------------------------------EVELT 314 (420)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHH---------------------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH---------------------------------------------------HHHHH
Confidence 12223334444443344444443 24577
Q ss_pred HHHHHHHhCCCCeEEecCC-----CccEEEEEecCCChHHHHHHHHHhccCcEEEeecc--------cCC-CcEEEEeec
Q psy11047 608 QKFEALVLGDPRFEIPAAR-----HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS--------LRI-QGLGRAQNF 673 (943)
Q Consensus 608 ~~l~~~L~~~p~~eIl~~~-----~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~--------~~g-~~~lR~v~~ 673 (943)
+++.+.|++.|++++..+. ..++++|.+++.+ ...+.+.|.++|. ++.+.. .-+ ..++|++++
T Consensus 315 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi-~v~~~~~~~~~~~~~~g~~~~iRis~~ 391 (420)
T 1t3i_A 315 HYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLH--ASDVATMVDQDGI-AIRSGHHCTQPLHRLFDASGSARASLY 391 (420)
T ss_dssp HHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBC--HHHHHHHHHTTTE-ECBCSCTTCHHHHHHTTCCCCEEEECC
T ss_pred HHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCC--HHHHHHHHHHCCe-EEeeccccchHHHHhcCCCCeEEEecC
Confidence 8888899998999998764 4889999986533 4677888888875 444321 112 578999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q psy11047 674 TRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 674 ~~tt~edId~ll~~I~~~~~~l 695 (943)
..++++|++++++.|+++.+.+
T Consensus 392 ~~~~~~~i~~~~~~l~~~~~~~ 413 (420)
T 1t3i_A 392 FYNTKEEIDLFLQSLQATIRFF 413 (420)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999886543
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-17 Score=176.94 Aligned_cols=312 Identities=9% Similarity=0.007 Sum_probs=204.0
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
++....+...+.+++++++|.++. ...++|+|||+|+..++.+.. .+| -.|+
T Consensus 48 ~~~~~~~~~~~~~~la~~~g~~~~---------~~v~~~~g~t~a~~~~~~~l~----------~~g---------d~vl 99 (386)
T 2dr1_A 48 SKEYRKVHMDTVERLREFLEVEKG---------EVLLVPSSGTGIMEASIRNGV----------SKG---------GKVL 99 (386)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCSSS---------EEEEESSCHHHHHHHHHHHHS----------CTT---------CEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC---------cEEEEeCChHHHHHHHHHHhh----------cCC---------CeEE
Confidence 455678889999999999999721 257899999999988877531 122 2467
Q ss_pred ecCCCchH--HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 306 CSDQAHSS--VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 306 ~S~~aHyS--v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+++.+|++ +..++...+.+++.++.+.++.+|+++|+++|++.. .+.+|+.+...+.+|.+.|+++|.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~nptG~~~~l~~i~~----- 170 (386)
T 2dr1_A 100 VTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNP----DVEAVTITYNETSTGVLNPLPELAK----- 170 (386)
T ss_dssp EEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCT----TCCEEEEESEETTTTEECCHHHHHH-----
T ss_pred EEcCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCC----CCcEEEEEeecCCcchhCCHHHHHH-----
Confidence 77889988 666665444588999998889999999999996521 2667888888899999999999999
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccc
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHC 463 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~ 463 (943)
+|++||+ |+++|++|+.+ .+ ..
T Consensus 171 ---------------l~~~~~~-------~li~D~a~~~~-~~-----------------------------------~~ 192 (386)
T 2dr1_A 171 ---------------VAKEHDK-------LVFVDAVSAMG-GA-----------------------------------DI 192 (386)
T ss_dssp ---------------HHHHTTC-------EEEEECTTTBT-TB-----------------------------------CC
T ss_pred ---------------HHHHcCC-------eEEEEcccccc-Cc-----------------------------------cc
Confidence 9999999 99999999865 22 00
Q ss_pred cchhhhhcCCCCeeEEEEcCCCccCccCc-chhhhhcccCcccccc----CCCCcccccC--------ccccCCCCC-cc
Q psy11047 464 VPASLRIQGLGRAQNFTIVPSSLLRVKNS-GALHRTFNVEPLYLRH----ENSGLAIDYM--------HWQIPLSKR-FR 529 (943)
Q Consensus 464 p~~r~~l~Gie~ADSItiDpHK~L~vr~~-~~L~~af~~~p~YL~~----~~~g~~~d~~--------~~tie~SRr-fr 529 (943)
+ +... .+|.++.++||+++...+ +.+. .....+.. ...+...++. .....++.. ..
T Consensus 193 ~-----~~~~-~~di~~~s~sK~~~~~~g~G~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (386)
T 2dr1_A 193 K-----FDKW-GLDVVFSSSQKAFGVPPGLAIGA----FSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQ 262 (386)
T ss_dssp C-----TTTT-TCSEEEEETTSTTCCCSSCEEEE----ECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHH
T ss_pred c-----cccc-CCcEEEEeccccccCCCceEEEE----ECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHH
Confidence 1 1111 469999999999884321 1110 00000000 0000000000 000111111 11
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHH
Q psy11047 530 ALKLWFVIRNFGIK-GLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 608 (943)
Q Consensus 530 ALklW~tLr~~G~~-Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~ 608 (943)
...++.+++.+... |+.+..++ ..++++
T Consensus 263 ~~a~~~~l~~~~~~g~~~~~~~~---------------------------------------------------~~~~~~ 291 (386)
T 2dr1_A 263 VFGINVALRIIEKMGGKEKWLEM---------------------------------------------------YEKRAK 291 (386)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH---------------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHH---------------------------------------------------HHHHHH
Confidence 22233344443322 33333333 245677
Q ss_pred HHHHHHhCCCCeEEecCC---CccEEEEEec-CCChHHHHHHHHHhccCcEEEeecc-cCCCcEEEEeecCCCCHHHHHH
Q psy11047 609 KFEALVLGDPRFEIPAAR---HLGMVVIRLL-GENILTEKLLKRLNSKGRLHCVPAS-LRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 609 ~l~~~L~~~p~~eIl~~~---~l~iV~Fr~~-g~n~l~~~Ll~~L~~~G~~~~s~t~-~~g~~~lR~v~~~~tt~edId~ 683 (943)
++.+.|++. ++++..+. ..++++|+++ +.+ ..++.++|.++|. ++.+.. ..+..++|++++..++++|+++
T Consensus 292 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi-~v~~~~~~~~~~~iRi~~~~~~~~~~i~~ 367 (386)
T 2dr1_A 292 MVREGVREI-GLDILAEPGHESPTITAVLTPPGIK--GDEVYEAMRKRGF-ELAKGYGSVKEKTFRIGHMGYMKFEDIQE 367 (386)
T ss_dssp HHHHHHHHT-TCCBSSCTTCBCSSEEEEECCTTCC--HHHHHHHHHHTTE-ECEECCGGGTTTEEEEECCSSCCHHHHHH
T ss_pred HHHHHHHHc-CCeeCcCccccCCceEEEEcCCCCC--HHHHHHHHHHCCe-EEecCccccCCCEEEEECCCCCCHHHHHH
Confidence 777778776 77776543 4678889886 222 5678888888874 454432 1245699998888999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy11047 684 DWNEIRNTATEILA 697 (943)
Q Consensus 684 ll~~I~~~~~~ll~ 697 (943)
+++.|+++.+++..
T Consensus 368 ~~~~l~~~~~~~~~ 381 (386)
T 2dr1_A 368 MLDNLREVINELKK 381 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC
Confidence 99999988766543
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.3e-18 Score=180.88 Aligned_cols=311 Identities=13% Similarity=0.052 Sum_probs=202.6
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.++....+...+.+++++++|.+... ...++|+|||+|+. ++.+. + .+| -.|
T Consensus 29 ~~~~~~~~~~~~~~~la~~~~~~~~~--------~~v~~~~g~t~al~-~~~~~----~------~~g---------d~v 80 (384)
T 3zrp_A 29 TSKEFVEALAYSLKGLRYVMGASKNY--------QPLIIPGGGTSAME-SVTSL----L------KPN---------DKI 80 (384)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCTTS--------EEEEEESCHHHHHH-HGGGG----C------CTT---------CEE
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCC--------cEEEEcCCcHHHHH-HHHhh----c------CCC---------CEE
Confidence 35666788888999999999997520 25899999999998 76432 1 122 246
Q ss_pred EecCCCchH--HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 305 YCSDQAHSS--VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 305 ~~S~~aHyS--v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
++++.+|++ +...+...+.+++.++.+.++.+|+++|+++|++.. +.+|+.+...+.+|.+.|+++|.+
T Consensus 81 i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~nptG~~~~l~~i~~---- 151 (384)
T 3zrp_A 81 LVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSE-----YKLVALTHVETSTGVREPVKDVIN---- 151 (384)
T ss_dssp EEECSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSC-----EEEEEEESEETTTTEECCHHHHHH----
T ss_pred EEecCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCC-----CcEEEEeCCCCCCceECcHHHHHH----
Confidence 677788877 444444444589999999999999999999998731 678888889999999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+|++||+ |+++|++++.. .. +
T Consensus 152 ----------------l~~~~~~-------~li~D~a~~~~-~~--~--------------------------------- 172 (384)
T 3zrp_A 152 ----------------KIRKYVE-------LIVVDGVSSVG-AE--E--------------------------------- 172 (384)
T ss_dssp ----------------HHGGGEE-------EEEEECTTTTT-TS--C---------------------------------
T ss_pred ----------------HHHhcCC-------EEEEECccccc-Cc--c---------------------------------
Confidence 9999999 99999998755 21 0
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccC-ccCcch------hhhhc-c---cCccccccCCCCccccc-Cc----cccC-CC
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLR-VKNSGA------LHRTF-N---VEPLYLRHENSGLAIDY-MH----WQIP-LS 525 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~-vr~~~~------L~~af-~---~~p~YL~~~~~g~~~d~-~~----~tie-~S 525 (943)
.+ . .. ..+|.+++++||+++ ...-+. +.+.+ . ....|+.... ..+. .. .... ++
T Consensus 173 ~~-~----~~-~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~ 243 (384)
T 3zrp_A 173 VK-A----EE-WNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRN---WLPVMRGAEEGKAAYFAT 243 (384)
T ss_dssp CC-T----TT-TTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHH---HHHHHHHHHTTCCCCSSC
T ss_pred cc-c----cc-cCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHH---HHHHHHhhcccCCCcCCC
Confidence 00 0 01 147999999999886 111111 11111 0 0000100000 0000 00 0000 11
Q ss_pred CC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHH
Q psy11047 526 KR-FRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSV 604 (943)
Q Consensus 526 Rr-frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~ 604 (943)
-. .....++.++..+...++.+..++ ..
T Consensus 244 ~~~~~~~a~~~al~~~~~~~~~~~~~~---------------------------------------------------~~ 272 (384)
T 3zrp_A 244 PPVHVILQLAEAFRLIEKEGIENRIKR---------------------------------------------------HT 272 (384)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHH---------------------------------------------------HH
T ss_pred CCHHHHHHHHHHHHHHHhcCHHHHHHH---------------------------------------------------HH
Confidence 11 122334445555444445554444 24
Q ss_pred HHHHHHHHHHhCCCCeEEecCC----CccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHH
Q psy11047 605 RLAQKFEALVLGDPRFEIPAAR----HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDD 680 (943)
Q Consensus 605 ~LA~~l~~~L~~~p~~eIl~~~----~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~ed 680 (943)
++++++.+.|++. ++++..+. ..++++|++.+.+ ...+.++|.++|.. +.+.......++|++++..++++|
T Consensus 273 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~-v~~g~~~~~~~iRi~~~~~~~~e~ 348 (384)
T 3zrp_A 273 MVASAIRAGLEAL-GLEIVARRPESYSNTVTGVILKVAD--PQKVLAGTVNEGVE-FAPGVHPAFKYFRIGHMGWVTPND 348 (384)
T ss_dssp HHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEEEECSSSC--HHHHHHHHHTTTCC-CEECCCTTCCEEEEECCSSCCHHH
T ss_pred HHHHHHHHHHHHC-CCeEccCcccccCccEEEEECCCCC--HHHHHHHHHHCCEE-EecCCCCCcCEEEEeccccCCHHH
Confidence 5677888888877 78877655 4678889987633 57888889888753 333211111789998888899999
Q ss_pred HHHHHHHHHHHHHHH
Q psy11047 681 ITRDWNEIRNTATEI 695 (943)
Q Consensus 681 Id~ll~~I~~~~~~l 695 (943)
|+++++.|+++..++
T Consensus 349 i~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 349 AIIAISVIERTLRKL 363 (384)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999886654
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-17 Score=175.91 Aligned_cols=309 Identities=11% Similarity=0.041 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHHHhCC-CccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec
Q psy11047 229 CTELEIITMNWLGKMIGL-PEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~-p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S 307 (943)
......++.+++++++|. +.+ ..+||+|||+|+..++.+.+.... .+| -.|+++
T Consensus 65 ~~~~~~~l~~~la~~~~~~~~~----------~v~~~~g~t~a~~~~~~~~~~~~~------~~g---------d~vl~~ 119 (406)
T 1kmj_A 65 ATEKMENVRKRASLFINARSAE----------ELVFVRGTTEGINLVANSWGNSNV------RAG---------DNIIIS 119 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCSCGG----------GEEEESSHHHHHHHHHHHTHHHHC------CTT---------CEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCC----------eEEEeCChhHHHHHHHHHhhhhcC------CCC---------CEEEEe
Confidence 455666788999999998 332 689999999999999887653211 122 246777
Q ss_pred CCCchHHHH----HHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 308 DQAHSSVEK----AGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 308 ~~aHySv~K----Aa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+.+|++... .+...+.+++.++.++++.+|+++|+++|+.+ +.+|+.+...+.+|.+.|+++|.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~~----- 188 (406)
T 1kmj_A 120 QMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEK------TRLLAITHVSNVLGTENPLAEMIT----- 188 (406)
T ss_dssp TTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTT------EEEEEEESBCTTTCCBCCHHHHHH-----
T ss_pred cccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccC------CeEEEEeCCCccccCcCCHHHHHH-----
Confidence 888877543 23332347889999888999999999998643 678888889999999999999999
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccc
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHC 463 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~ 463 (943)
+|++||+ ++++|++++.+ .. + .
T Consensus 189 ---------------l~~~~~~-------~li~D~~~~~g-~~--~---------------------------------~ 210 (406)
T 1kmj_A 189 ---------------LAHQHGA-------KVLVDGAQAVM-HH--P---------------------------------V 210 (406)
T ss_dssp ---------------HHHHTTC-------EEEEECTTTTT-TS--C---------------------------------C
T ss_pred ---------------HHHHcCC-------EEEEEchhhcC-CC--C---------------------------------C
Confidence 9999999 99999999765 21 0 1
Q ss_pred cchhhhhcCCCCeeEEEEcCCCccCccCcch------hhhhcccCccccccCCCCccccc--------CccccC-CCCCc
Q psy11047 464 VPASLRIQGLGRAQNFTIVPSSLLRVKNSGA------LHRTFNVEPLYLRHENSGLAIDY--------MHWQIP-LSKRF 528 (943)
Q Consensus 464 p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~------L~~af~~~p~YL~~~~~g~~~d~--------~~~tie-~SRrf 528 (943)
+ ... . .+|.++.++||+++...-+. +.+.+ .+ +..+.......+. ..+.+. ++...
T Consensus 211 ~-~~~----~-~~d~~~~s~~K~~g~~G~G~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (406)
T 1kmj_A 211 D-VQA----L-DCDFYVFSGHKLYGPTGIGILYVKEALLQEM--PP-WEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNT 281 (406)
T ss_dssp C-HHH----H-TCSEEEEEGGGTTSCTTCEEEEECHHHHHHC--CC-SSCSTTSEEEEETTTEEEECCTTGGGCCSSCCH
T ss_pred c-ccc----c-CCCEEEEEchhccCCCCcEEEEEeHHHHhhc--CC-cccCCCceeecccccccccCCCchhccCCCCCH
Confidence 1 111 1 36999999999887322111 11111 11 1100000000000 000111 11111
Q ss_pred c-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHH
Q psy11047 529 R-ALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 607 (943)
Q Consensus 529 r-ALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA 607 (943)
. +..+..+++.+...++.+..++ ..+++
T Consensus 282 ~~~~a~~~al~~~~~~~~~~~~~~---------------------------------------------------~~~~~ 310 (406)
T 1kmj_A 282 GGIIGLGAALEYVSALGLNNIAEY---------------------------------------------------EQNLM 310 (406)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHH---------------------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHH---------------------------------------------------HHHHH
Confidence 1 1112123333322233333333 24578
Q ss_pred HHHHHHHhCCCCeEEecCC-CccEEEEEecCCChHHHHHHHHHhccCcEEEeecc---------cCCCcEEEEeecCCCC
Q psy11047 608 QKFEALVLGDPRFEIPAAR-HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS---------LRIQGLGRAQNFTRTT 677 (943)
Q Consensus 608 ~~l~~~L~~~p~~eIl~~~-~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~---------~~g~~~lR~v~~~~tt 677 (943)
+++.+.|++.|++++..+. ..++++|.+++.+ ...+.+.|.++|.+ +.+.. .....++|++++..+|
T Consensus 311 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~-v~~g~~~~~~~~~~~g~~~~iRis~~~~~t 387 (406)
T 1kmj_A 311 HYALSQLESVPDLTLYGPQNRLGVIAFNLGKHH--AYDVGSFLDNYGIA-VRTGHHCAMPLMAYYNVPAMCRASLAMYNT 387 (406)
T ss_dssp HHHHHHHTTSTTEEEESCTTCCSEEEEEETTCC--HHHHHHHHHHTTEE-CEEECTTCHHHHHHTTCSCEEEEECCTTCC
T ss_pred HHHHHHHhcCCCeEEecCCCcCCEEEEEECCCC--HHHHHHHHhhCCcE-EEeccccchHHHHhcCCCCeEEEEeecCCC
Confidence 8889999998999988764 6889999986533 46777888888854 43321 1225799999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11047 678 NDDITRDWNEIRNTATE 694 (943)
Q Consensus 678 ~edId~ll~~I~~~~~~ 694 (943)
++|++++++.|+++.+.
T Consensus 388 ~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 388 HEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988654
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-16 Score=172.21 Aligned_cols=306 Identities=11% Similarity=0.058 Sum_probs=198.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
........++.+++++++|.+.+ ..++|+|||+|+..++.+.+.... .+| -.|++
T Consensus 40 ~~~~~~~~~l~~~la~~~g~~~~----------~v~~~~g~t~a~~~~~~~~~~~~~------~~g---------d~vl~ 94 (384)
T 1eg5_A 40 IEANLHMEKAREKVAKVLGVSPS----------EIFFTSCATESINWILKTVAETFE------KRK---------RTIIT 94 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCGG----------GEEEESCHHHHHHHHHHHHHHHTT------TTC---------CEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC----------eEEEECCHHHHHHHHHHhhhhhcc------CCC---------CEEEE
Confidence 34566777899999999998754 589999999999988887653100 122 24778
Q ss_pred cCCCchHHHHHH---HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 307 SDQAHSSVEKAG---LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 307 S~~aHySv~KAa---~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
++.+|.++..++ ...+.+++.++.+.++.+|+++|+++|+++ +.+|+.+...+.+|.+.|+++|.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~----- 163 (384)
T 1eg5_A 95 TPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDED------TFLVSIMAANNEVGTIQPVEDVTR----- 163 (384)
T ss_dssp CTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHH-----
T ss_pred CCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCCC------CeEEEEECCCCCcccccCHHHHHH-----
Confidence 899999987765 333458889999888999999999998653 677888889999999999999999
Q ss_pred ccccccccccCchHHHHHHcC--CCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcc
Q psy11047 384 GLGFYKMKLQTNFPNFILSYF--PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRL 461 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~G--l~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~ 461 (943)
+|++|| + |+++|++++.. ..
T Consensus 164 ---------------l~~~~~~~~-------~li~Dea~~~~-~~----------------------------------- 185 (384)
T 1eg5_A 164 ---------------IVKKKNKET-------LVHVDAVQTIG-KI----------------------------------- 185 (384)
T ss_dssp ---------------HHHHHCTTC-------EEEEECTTTTT-TS-----------------------------------
T ss_pred ---------------HHHhcCCce-------EEEEEhhhhcC-Cc-----------------------------------
Confidence 999999 9 99999998632 11
Q ss_pred cccchhhhhcCCCCeeEEEEcCCCccCccCcchhh--hhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHH
Q psy11047 462 HCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH--RTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIR 538 (943)
Q Consensus 462 ~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~--~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr 538 (943)
.. . +... .+|.+++++||+++...-+.+. ..+...+ ++... +. . .....++-. .....++.+++
T Consensus 186 ~~-~----~~~~-~~di~~~s~sK~~g~~G~G~~~~~~~~~~~~-~~~~~--~~--~--~~~~~~~~~~~~~~a~~~al~ 252 (384)
T 1eg5_A 186 PF-S----LEKL-EVDYASFSAHKFHGPKGVGITYIRKGVPIRP-LIHGG--GQ--E--RGLRSGTQNVPGIVGAARAME 252 (384)
T ss_dssp CC-C----CTTT-CCSEEEEEGGGGTSCTTCEEEEECTTSCCCC-SBCSS--CT--T--TTTBCSCCCHHHHHHHHHHHH
T ss_pred cc-C----chhc-CCCEEEecHHHhcCCCceEEEEEcCCCcccc-ccccC--cc--c--ccccCCCCChHHHHHHHHHHH
Confidence 00 0 1112 4799999999997743312210 0000000 11100 00 0 000011111 11112222232
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCC
Q psy11047 539 NFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDP 618 (943)
Q Consensus 539 ~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p 618 (943)
.. .+.+.+.+++ ..++++++.+.|++ +
T Consensus 253 ~~-~~~~~~~~~~---------------------------------------------------~~~~~~~l~~~L~~-~ 279 (384)
T 1eg5_A 253 IA-VEELSEAAKH---------------------------------------------------MEKLRSKLVSGLMN-L 279 (384)
T ss_dssp HH-HHTHHHHHHH---------------------------------------------------HHHHHHHHHHHHHT-T
T ss_pred HH-HHhHHHHHHH---------------------------------------------------HHHHHHHHHHHhCC-C
Confidence 21 1222222222 24567788888887 7
Q ss_pred CeEEecCC---CccEEEEEecCCChHHHHHHHHHhccCcEEEeecc-c-------------------CCCcEEEEeecCC
Q psy11047 619 RFEIPAAR---HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS-L-------------------RIQGLGRAQNFTR 675 (943)
Q Consensus 619 ~~eIl~~~---~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~-~-------------------~g~~~lR~v~~~~ 675 (943)
++++..++ ..+++.|.+.+.+ ...+.+.|.++|. ++.+.. . .+..++|+++++.
T Consensus 280 g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi-~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~ 356 (384)
T 1eg5_A 280 GAHIITPLEISLPNTLSVSFPNIR--GSTLQNLLSGYGI-YVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKY 356 (384)
T ss_dssp TCEECSCTTSBCTTEEEEECTTCC--HHHHHHHHHHTTE-ECBC------------CHHHHTTCCHHHHHHEEEEECCTT
T ss_pred CeEEeCCcccCCCCEEEEEeCCCC--HHHHHHHHhhCCe-EEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCC
Confidence 89887654 3568889887543 4678888887775 443311 1 0136899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q psy11047 676 TTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 676 tt~edId~ll~~I~~~~~~l 695 (943)
++++|++++++.|+++.+++
T Consensus 357 ~~~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 357 NTEEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp CCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886654
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.9e-18 Score=178.22 Aligned_cols=309 Identities=9% Similarity=-0.008 Sum_probs=198.0
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.+|.....+.++.+++++++|.+.. ....++|+|||+|+..++.+.+ . -.|
T Consensus 27 ~~~~~~~~~~~l~~~la~~~g~~~~--------~~~v~~t~g~t~a~~~~~~~~~--------------------~-d~v 77 (353)
T 2yrr_A 27 LDPEVLRVNRAIQERLAALFDPGEG--------ALVAALAGSGSLGMEAGLANLD--------------------R-GPV 77 (353)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCCCTT--------CEEEEESSCHHHHHHHHHHTCS--------------------C-CCE
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCC--------CceEEEcCCcHHHHHHHHHHhc--------------------C-CcE
Confidence 3566778888999999999998621 0258999999999988776421 0 125
Q ss_pred EecCCCchHH--HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 305 YCSDQAHSSV--EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 305 ~~S~~aHySv--~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
++++.+|++. .+++...+.+++.++.++++.+|+++|++.|++. .+.+|+.+..++.+|.+.|+++|.+
T Consensus 78 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~i~~---- 148 (353)
T 2yrr_A 78 LVLVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRR-----RYRMVALVHGETSTGVLNPAEAIGA---- 148 (353)
T ss_dssp EEEECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECCHHHHHH----
T ss_pred EEEcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhC-----CCCEEEEEccCCCcceecCHHHHHH----
Confidence 6677789885 3444433448899999989999999999999862 2567888899999999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+|++||+ |+|+|++|+.. .. +
T Consensus 149 ----------------l~~~~~~-------~li~D~a~~~~-~~--~--------------------------------- 169 (353)
T 2yrr_A 149 ----------------LAKEAGA-------LFFLDAVTTLG-ML--P--------------------------------- 169 (353)
T ss_dssp ----------------HHHHHTC-------EEEEECTTTTT-TS--C---------------------------------
T ss_pred ----------------HHHHcCC-------eEEEEcCcccc-cc--c---------------------------------
Confidence 9999999 99999999643 21 0
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccCc-cCcch------hhhhcccCc-cccccCCCCcccccCccccCCCCCc-chHHH
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLRV-KNSGA------LHRTFNVEP-LYLRHENSGLAIDYMHWQIPLSKRF-RALKL 533 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~v-r~~~~------L~~af~~~p-~YL~~~~~g~~~d~~~~tie~SRrf-rALkl 533 (943)
.+ ... . .+|.+++++|||++. ..-+. +.+.+...+ .|+.......... .....++... ....+
T Consensus 170 ~~-~~~----~-~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~ 241 (353)
T 2yrr_A 170 FS-MRA----M-GVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWE--RGGYHHTTPVLLHYAL 241 (353)
T ss_dssp CC-HHH----H-TCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHT--TCCCSSCCCHHHHHHH
T ss_pred cc-ccc----c-CceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHHhhhhh--cCCCCCCCCHHHHHHH
Confidence 11 111 1 359999999997762 11111 111111001 1110000000000 0011122221 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHH
Q psy11047 534 WFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL 613 (943)
Q Consensus 534 W~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~ 613 (943)
+.++..+...|+.+.+++ ..++++++.+.
T Consensus 242 ~~al~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~l~~~ 270 (353)
T 2yrr_A 242 LEALDLVLEEGVAARERR---------------------------------------------------AREVYAWVLEE 270 (353)
T ss_dssp HHHHHHHHHHCHHHHHHH---------------------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH---------------------------------------------------HHHHHHHHHHH
Confidence 445555544455554444 24567777777
Q ss_pred HhCCCCeEEecCC--CccEEEEEec-CCChHHHHHHHHHhccCcEEEeecc-cCCCcEEEEeecCCCCHHHHH-HHHHHH
Q psy11047 614 VLGDPRFEIPAAR--HLGMVVIRLL-GENILTEKLLKRLNSKGRLHCVPAS-LRIQGLGRAQNFTRTTNDDIT-RDWNEI 688 (943)
Q Consensus 614 L~~~p~~eIl~~~--~l~iV~Fr~~-g~n~l~~~Ll~~L~~~G~~~~s~t~-~~g~~~lR~v~~~~tt~edId-~ll~~I 688 (943)
|++. ++++..++ ...+++|+++ +.+ ..++.++|.++|. ++.+.. .....++|++++..++++|++ ++++.|
T Consensus 271 L~~~-g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi-~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l 346 (353)
T 2yrr_A 271 LKAR-GFRPYPKASPLPTVLVVRPPEGVD--ADRLVRALYAEGV-AVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKAL 346 (353)
T ss_dssp HHHT-TCEESCSSSBCTTEEEEECCTTCC--HHHHHHHHHHTTE-ECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHH
T ss_pred HHHC-CCccccCccCCCeEEEEECCCCCC--HHHHHHHHHHCCE-EEeCCccccCCCeEEEecCccCCHHHHHHHHHHHH
Confidence 7776 88887654 4567789885 333 5678888888875 444322 223568999887777888998 999999
Q ss_pred HHHHH
Q psy11047 689 RNTAT 693 (943)
Q Consensus 689 ~~~~~ 693 (943)
+++.+
T Consensus 347 ~~~l~ 351 (353)
T 2yrr_A 347 DRALA 351 (353)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87643
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.5e-17 Score=174.33 Aligned_cols=341 Identities=8% Similarity=-0.061 Sum_probs=209.3
Q ss_pred CCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHH
Q psy11047 190 QSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASE 269 (943)
Q Consensus 190 ~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTe 269 (943)
..|+++.+.+++...+..+.+.+. ++... ..++....+..++.+++++++|.+.. ...++|+|||+
T Consensus 20 ~~~~~~~~~p~p~~~~~~v~~a~~---~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~~---------~~v~~~~gg~~ 85 (393)
T 3kgw_A 20 SVPTRLLLGPGPSNLAPRVLAAGS---LRMIG--HMQKEMLQIMEEIKQGIQYVFQTRNP---------LTLVVSGSGHC 85 (393)
T ss_dssp CCCCCEECSSSCCCCCHHHHHHTT---CCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCS---------EEEEESCCTTT
T ss_pred CCccceeccCCCCCCCHHHHHHhc---ccccC--cccHHHHHHHHHHHHHHHHHhCCCCC---------cEEEEeCCcHH
Confidence 456777777766544333333222 21111 23466677888899999999998753 24789999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH--HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHH
Q psy11047 270 STLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV--EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIER 347 (943)
Q Consensus 270 ANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv--~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~ 347 (943)
|+..++.+.. .+| -.|+++..+||+. ..++...+.+++.++.+.++.+|+++|+++|++
T Consensus 86 al~~~~~~~~----------~~g---------d~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~ 146 (393)
T 3kgw_A 86 AMETALFNLL----------EPG---------DSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQ 146 (393)
T ss_dssp HHHHHHHHHC----------CTT---------CEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHhcC----------CCC---------CEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhh
Confidence 9988876531 122 2355567777743 555544455889999998999999999999987
Q ss_pred hhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccc
Q psy11047 348 DKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427 (943)
Q Consensus 348 d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afe 427 (943)
. .+.+|+.+...+.+|.+.|+++|.+ +|++||+ |+++|++++.. ..
T Consensus 147 ~-----~~~~v~~~~~~nptG~~~~l~~i~~--------------------l~~~~~~-------~li~De~~~~g-~~- 192 (393)
T 3kgw_A 147 H-----KPVLLFLVHGESSTGVVQPLDGFGE--------------------LCHRYQC-------LLLVDSVASLG-GV- 192 (393)
T ss_dssp H-----CCSEEEEESEETTTTEECCCTTHHH--------------------HHHHTTC-------EEEEECTTTTT-TS-
T ss_pred C-----CCcEEEEeccCCcchhhccHHHHHH--------------------HHHHcCC-------EEEEECCcccc-Cc-
Confidence 3 1667888888899999999999999 9999999 99999998733 11
Q ss_pred cccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC-c-------cCcchhhhhc
Q psy11047 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR-V-------KNSGALHRTF 499 (943)
Q Consensus 428 Lp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-v-------r~~~~L~~af 499 (943)
... .. . ..+|.+++++||+++ . -++. +.+.+
T Consensus 193 ----------------------------------~~~-~~----~-~~~d~~~~s~sK~~~~~~g~g~~~~~~~-~~~~~ 231 (393)
T 3kgw_A 193 ----------------------------------PIY-MD----Q-QGIDIMYSSSQKVLNAPPGISLISFNDK-AKYKV 231 (393)
T ss_dssp ----------------------------------CCC-TT----T-TTCCEEEEESSSTTCCCSSCEEEEECHH-HHHHH
T ss_pred ----------------------------------ccc-hh----h-cCCCEEEecCcccccCCCceeEEEECHH-HHHHH
Confidence 000 00 0 246999999999775 1 1111 11111
Q ss_pred cc-----CccccccCC----CCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc
Q psy11047 500 NV-----EPLYLRHEN----SGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCC 569 (943)
Q Consensus 500 ~~-----~p~YL~~~~----~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~ 569 (943)
.. ..-|+.... .+.. .. .....++-. .....++.++..+...++.+..++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~------------------ 291 (393)
T 3kgw_A 232 YSRKTKPVSFYTDITYLAKLWGCE-GE-TRVIHHTTPVTSLYCLRESLALIAEQGLENCWRR------------------ 291 (393)
T ss_dssp HTCSSCCSCSTTCHHHHHHHTTCS-SS-CCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHH------------------
T ss_pred hccCCCCCceeecHHHHHHhhhhc-cc-cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHH------------------
Confidence 10 000110000 0000 00 000001111 112233344444444444544444
Q ss_pred cchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC----CccEEEEEecCCChHHHHH
Q psy11047 570 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR----HLGMVVIRLLGENILTEKL 645 (943)
Q Consensus 570 ~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~----~l~iV~Fr~~g~n~l~~~L 645 (943)
..++++++.+.|++. ++++..+. ...+++|++... ....++
T Consensus 292 ---------------------------------~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 336 (393)
T 3kgw_A 292 ---------------------------------HREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVTVPAG-YNWRDI 336 (393)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEECCTT-BCHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEeCCCC-CCHHHH
Confidence 245677788888777 77776432 245667887531 125678
Q ss_pred HHHHhcc-CcEEEeecc-cCCCcEEEEee-cCCCCHHHHHHHHHHHHHHHHH
Q psy11047 646 LKRLNSK-GRLHCVPAS-LRIQGLGRAQN-FTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 646 l~~L~~~-G~~~~s~t~-~~g~~~lR~v~-~~~tt~edId~ll~~I~~~~~~ 694 (943)
.++|.++ |. ++.+.. ..+..++|+++ +..++++|++++++.|+++.++
T Consensus 337 ~~~l~~~~gi-~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~ 387 (393)
T 3kgw_A 337 VSYVLDHFSI-EISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQH 387 (393)
T ss_dssp HHHHHHHHCE-ECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCE-EEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence 8888877 75 444322 23456999976 6667999999999999887654
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-17 Score=183.30 Aligned_cols=331 Identities=13% Similarity=0.028 Sum_probs=208.9
Q ss_pred HHHHHHHHHHhccCccccCC-hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 207 LLGDMLSDAINCLGFTWASS-PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 207 ilgd~L~~alN~n~~~~~~S-PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
.+.+.+....+.+...|..+ +....+...+.+|+++++|.+.+ ..+||+|+|+++..++.+..
T Consensus 86 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~----------~v~~t~g~t~al~~~~~~~~------ 149 (465)
T 3e9k_A 86 YLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEK----------EIALMNALTVNLHLLMLSFF------ 149 (465)
T ss_dssp HHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGG----------GEEECSCHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcC----------CEEEECCHHHHHHHHHHHhc------
Confidence 34555544444443333322 23334556689999999999754 68999999999877766531
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHH----HHH-HCCcc----EEEEecCCCCCcCHHHHHHHHHHhhccCCCcE
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEK----AGL-IGLVN----MRYIESDDKLSLRGDKLIEAIERDKKKHLIPF 356 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~K----Aa~-LG~~~----v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~ 356 (943)
.++ ..+..|+++..+|.+... .+. .|..- +..+|.++++.+|+++|+++|++... .+.
T Consensus 150 ----~~~------~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~---~~~ 216 (465)
T 3e9k_A 150 ----KPT------PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGD---SIA 216 (465)
T ss_dssp ----CCC------SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGG---GEE
T ss_pred ----ccc------CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCC---CeE
Confidence 122 123458889999988544 343 45431 45667788899999999999985311 267
Q ss_pred EEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccce
Q psy11047 357 FIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGM 436 (943)
Q Consensus 357 ~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~ 436 (943)
+|+.+..++.+|.+.|+++|.+ +|++||+ ++++|+|++.+ .. +
T Consensus 217 lv~~~~~~n~tG~~~~l~~i~~--------------------la~~~g~-------~vi~D~a~~~g-~~--~------- 259 (465)
T 3e9k_A 217 VILFSGVHFYTGQHFNIPAITK--------------------AGQAKGC-------YVGFDLAHAVG-NV--E------- 259 (465)
T ss_dssp EEEEESBCTTTCBBCCHHHHHH--------------------HHHHTTC-------EEEEECTTTTT-TS--C-------
T ss_pred EEEEeCcccCcceeecHHHHHH--------------------HHHHcCC-------EEEEEhhhhcC-Cc--C-------
Confidence 8899999999999999999999 9999999 99999999866 22 1
Q ss_pred eeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC--ccCcchh--hhhc--ccCccccccCC
Q psy11047 437 VVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR--VKNSGAL--HRTF--NVEPLYLRHEN 510 (943)
Q Consensus 437 VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~--vr~~~~L--~~af--~~~p~YL~~~~ 510 (943)
. .... ..+|.+++++||+++ ...-..+ ...+ ...+ ++.+-.
T Consensus 260 --------------------------~-~~~~-----~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~-~~~g~~ 306 (465)
T 3e9k_A 260 --------------------------L-YLHD-----WGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKP-ALVGWF 306 (465)
T ss_dssp --------------------------C-CHHH-----HTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCC-SSCCGG
T ss_pred --------------------------C-chhh-----cCCCEEEECcccccccCCCceEEEEEcHHHHhhcCC-cccCcc
Confidence 1 1111 157999999999993 1111111 0000 0011 111000
Q ss_pred CCc---ccccC-cccc-CCCCCc--------chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhc
Q psy11047 511 SGL---AIDYM-HWQI-PLSKRF--------RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVK 577 (943)
Q Consensus 511 ~g~---~~d~~-~~ti-e~SRrf--------rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~ 577 (943)
.+. .+... .+++ .+.+++ ....++.++..+...|+.+..++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~-------------------------- 360 (465)
T 3e9k_A 307 GHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKK-------------------------- 360 (465)
T ss_dssp GBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHH--------------------------
T ss_pred CCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHH--------------------------
Confidence 000 00000 0111 111222 23445555555554444444444
Q ss_pred ccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCC----------CCeEEecCC----CccEEEEEecCCChHHH
Q psy11047 578 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD----------PRFEIPAAR----HLGMVVIRLLGENILTE 643 (943)
Q Consensus 578 ~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~----------p~~eIl~~~----~l~iV~Fr~~g~n~l~~ 643 (943)
..++++++.+.|.+. +++++..+. ..++++|++.. + ..
T Consensus 361 -------------------------~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~-~--~~ 412 (465)
T 3e9k_A 361 -------------------------SVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV-P--NK 412 (465)
T ss_dssp -------------------------HHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC-T--TC
T ss_pred -------------------------HHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC-C--HH
Confidence 345677777777764 789998765 37899999862 1 35
Q ss_pred HHHHHHhccCcEEEeecccCCCcEEEEee-cCCCCHHHHHHHHHHHHHHHHH
Q psy11047 644 KLLKRLNSKGRLHCVPASLRIQGLGRAQN-FTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 644 ~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~-~~~tt~edId~ll~~I~~~~~~ 694 (943)
.+.++|.++|.+ +. ..++.++|+++ +..++.+||+++++.|+++.++
T Consensus 413 ~l~~~L~~~Gi~-v~---~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 413 DVFQELEKRGVV-CD---KRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp CHHHHHHTTTEE-CE---EETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCEE-Ee---cCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 778888888854 33 34568999976 8999999999999999887643
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-16 Score=172.88 Aligned_cols=335 Identities=11% Similarity=0.037 Sum_probs=207.4
Q ss_pred CCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHH
Q psy11047 191 SPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASES 270 (943)
Q Consensus 191 sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeA 270 (943)
++.|+.+-.+...++.++..+ ...+.. ..++........+.+++++++|.+.+ ..++|+|||+|
T Consensus 8 ~~~yl~~~~~~~~~~~v~~a~-~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~----------~v~~t~g~t~a 71 (392)
T 2z9v_A 8 DPVITLTAGPVNAYPEVLRGL-GRTVLY-----DYDPAFQLLYEKVVDKAQKAMRLSNK----------PVILHGEPVLG 71 (392)
T ss_dssp CCSEECSSSCCCCCHHHHHHT-TSCCCC-----TTSHHHHHHHHHHHHHHHHHTTCSSC----------CEEESSCTHHH
T ss_pred CcceeecCCCcCCCHHHHHHH-hccccc-----cccHHHHHHHHHHHHHHHHHhCCCCC----------EEEEeCCchHH
Confidence 445655543334445544322 222211 12456667777899999999998643 68999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH--HHHH-HCCccEEEEecCCCCCcCHHHHHHHHHH
Q psy11047 271 TLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE--KAGL-IGLVNMRYIESDDKLSLRGDKLIEAIER 347 (943)
Q Consensus 271 NL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~--KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~ 347 (943)
+..++.+.. .+| -.|++++.+|++.. +.+. .|. +++.++++.++.+|+++|+++|+.
T Consensus 72 ~~~~~~~~~----------~~g---------d~Vl~~~~~~~~~~~~~~~~~~g~-~~~~v~~~~~~~~d~~~l~~~l~~ 131 (392)
T 2z9v_A 72 LEAAAASLI----------SPD---------DVVLNLASGVYGKGFGYWAKRYSP-HLLEIEVPYNEAIDPQAVADMLKA 131 (392)
T ss_dssp HHHHHHHHC----------CTT---------CCEEEEESSHHHHHHHHHHHHHCS-CEEEEECCTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhc----------CCC---------CEEEEecCCcccHHHHHHHHHcCC-ceEEeeCCCCCCCCHHHHHHHHhc
Confidence 988877641 122 23677788898863 2222 454 789999988899999999999975
Q ss_pred hhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccc
Q psy11047 348 DKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427 (943)
Q Consensus 348 d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afe 427 (943)
.. .+.+|+.+..++.+|.+.|+++|.+ +|++||+ |+++|++++.. ..
T Consensus 132 ~~----~~~~v~~~~~~nptG~~~~l~~i~~--------------------l~~~~~~-------~li~D~a~~~g-~~- 178 (392)
T 2z9v_A 132 HP----EITVVSVCHHDTPSGTINPIDAIGA--------------------LVSAHGA-------YLIVDAVSSFG-GM- 178 (392)
T ss_dssp CT----TCCEEEEESEEGGGTEECCHHHHHH--------------------HHHHTTC-------EEEEECTTTBT-TB-
T ss_pred CC----CCcEEEEeccCCCCceeccHHHHHH--------------------HHHHcCC-------eEEEEcccccC-Cc-
Confidence 21 2567888899999999999999999 9999999 99999999754 21
Q ss_pred cccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCc-cCcch------hhhhcc
Q psy11047 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRV-KNSGA------LHRTFN 500 (943)
Q Consensus 428 Lp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~v-r~~~~------L~~af~ 500 (943)
+ .+ .. .. .+|.++.++|||++. ..-+. +.+.+.
T Consensus 179 -~---------------------------------~~-~~----~~-~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~ 218 (392)
T 2z9v_A 179 -K---------------------------------TH-PE----DC-KADIYVTGPNKCLGAPPGLTMMGVSERAWAKMK 218 (392)
T ss_dssp -S---------------------------------CC-GG----GG-TCSEEEECSSSTTCCCSCCEEEEECHHHHHHHH
T ss_pred -c---------------------------------cc-cc----cc-cceEEEecCcccccCCCceeEEEECHHHHHHhh
Confidence 0 11 11 11 369999999997661 11111 111111
Q ss_pred c-C--c--cccccCCCCcccccCcc----ccCCCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy11047 501 V-E--P--LYLRHENSGLAIDYMHW----QIPLSKRFR-ALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCL 570 (943)
Q Consensus 501 ~-~--p--~YL~~~~~g~~~d~~~~----tie~SRrfr-ALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~ 570 (943)
. . + .|+... .....+ ...++...- ...++.+++.+...|+.+..++
T Consensus 219 ~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~------------------- 274 (392)
T 2z9v_A 219 ANPLAPRASMLSIV-----DWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWAR------------------- 274 (392)
T ss_dssp TCTTSCCSSTTCSG-----GGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHH-------------------
T ss_pred hccCCCCceeccHH-----HHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHH-------------------
Confidence 0 0 0 111100 000000 001111111 1233344444433344444443
Q ss_pred chhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC----CccEEEEEec-CCChHHHHH
Q psy11047 571 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR----HLGMVVIRLL-GENILTEKL 645 (943)
Q Consensus 571 g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~----~l~iV~Fr~~-g~n~l~~~L 645 (943)
..++++++.+.|++. ++++..++ ..+++.|+++ +.+ ..++
T Consensus 275 --------------------------------~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l 319 (392)
T 2z9v_A 275 --------------------------------HALTAKAMRAGVTAM-GLSVWAASDSIASPTTTAVRTPDGVD--EKAL 319 (392)
T ss_dssp --------------------------------HHHHHHHHHHHHHHT-TCCBSSSSGGGBCTTEEEEECCTTCC--HHHH
T ss_pred --------------------------------HHHHHHHHHHHHHHc-CCeeccCCccccCCceEEEECCCCCC--HHHH
Confidence 235667777777766 77777633 4778899985 333 4678
Q ss_pred HHHHhcc-CcEEEeec-ccCCCcEEEEe-ecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 646 LKRLNSK-GRLHCVPA-SLRIQGLGRAQ-NFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 646 l~~L~~~-G~~~~s~t-~~~g~~~lR~v-~~~~tt~edId~ll~~I~~~~~~ 694 (943)
.++|.++ |.. +.+. ......++|++ ..+.++++|++++++.|+++.++
T Consensus 320 ~~~L~~~~gi~-v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 320 RQAARARYGVV-FSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNA 370 (392)
T ss_dssp HHHHHHHHCEE-CEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCEE-EecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence 8888887 754 4332 22346799997 45588999999999999887543
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-17 Score=177.59 Aligned_cols=143 Identities=12% Similarity=0.025 Sum_probs=114.7
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
..+.....+..++.+++++++|.+.+ ..++|+|||+|+..++.+...+..+ +| +..
T Consensus 56 ~~~~~~~~~~~~l~~~la~~~~~~~~----------~v~~~~g~t~al~~~~~~l~~~~~~------~g--------d~~ 111 (400)
T 3vax_A 56 EYGIRAKRGVERAREYLASTVSAEPD----------ELIFTSGATESNNIALLGLAPYGER------TG--------RRH 111 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCGG----------GEEEESCHHHHHHHHHHTTHHHHHH------HT--------CCE
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCCC----------cEEEeCCHHHHHHHHHHHHHHhhcc------CC--------CCE
Confidence 33445567777899999999999754 6899999999999888876422111 11 214
Q ss_pred EEecCCCchHHHHHHH-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 304 AYCSDQAHSSVEKAGL-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 304 V~~S~~aHySv~KAa~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
|+++..+|.++..++. + .+.+++.++++.++.+|+++|+++|+++ +.+|+.+...+.+|.+.|+++|.+
T Consensus 112 Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~-- 183 (400)
T 3vax_A 112 IITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRPD------TLLVSLMHVNNETGVIQPVAELAQ-- 183 (400)
T ss_dssp EEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCTT------EEEEECCSBCTTTCBBCCHHHHHH--
T ss_pred EEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCCC------ceEEEEECCCCCceeeCcHHHHHH--
Confidence 7788999999888763 3 3458899999999999999999988653 678888888999999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+++|++++..
T Consensus 184 ------------------la~~~~~-------~li~D~a~~~~ 201 (400)
T 3vax_A 184 ------------------QLRATPT-------YLHVDAAQGYG 201 (400)
T ss_dssp ------------------HHTTSSC-------EEEEECTTTTT
T ss_pred ------------------HHHhcCC-------EEEEEhhhhcC
Confidence 9999999 99999999754
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-16 Score=173.58 Aligned_cols=185 Identities=11% Similarity=0.058 Sum_probs=126.9
Q ss_pred eeEEccCCCChHHHHHHHHHHHHhccC---ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHH
Q psy11047 194 MHAYFPALNSYPSLLGDMLSDAINCLG---FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASES 270 (943)
Q Consensus 194 f~g~~~~~~s~~silgd~L~~alN~n~---~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeA 270 (943)
|+.+-.+...++.++..+....-+..+ ..|..++....+...+.+++++++|.+.+ ..+||+|||+|
T Consensus 21 ~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~----------~v~~~~g~t~a 90 (432)
T 3a9z_A 21 YMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQ----------DIIFTSGGTES 90 (432)
T ss_dssp ECBTTTCCCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGG----------GEEEESCHHHH
T ss_pred EeeCCccCCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcC----------eEEEeCChHHH
Confidence 444333333455555444333322111 12333445677888999999999998643 68999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCc----hhhhcCCceEEEecCCCchHHHHHHH-H---CCccEEEEecCC-CCCcCHHHH
Q psy11047 271 TLICLLAGRTEAIRKYQQSHPEL----EHAEINSRLVAYCSDQAHSSVEKAGL-I---GLVNMRYIESDD-KLSLRGDKL 341 (943)
Q Consensus 271 NL~AL~aAR~~~l~~~~~~~pGl----~~~~i~~~~vV~~S~~aHySv~KAa~-L---G~~~v~~Vp~D~-~grmD~daL 341 (943)
+..++.+....+..... .+|- ..........+++|..+|.|+.++.. + .+.+++.|+++. ++.+|+++|
T Consensus 91 ~~~~~~~~~~~~~~~~~--~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l 168 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQT--LQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDI 168 (432)
T ss_dssp HHHHHHHHHHHHHHHHH--HC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHH
T ss_pred HHHHHHHHHhhhhhccc--cCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHH
Confidence 99998876432111000 0110 00001122468889999999988762 2 455889999875 889999999
Q ss_pred HHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcC----------CCCCccc
Q psy11047 342 IEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYF----------PKFQSVR 411 (943)
Q Consensus 342 e~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~G----------l~~~~l~ 411 (943)
+++|+.+ +.+|+.+..++.+|.+.|+++|.+ +|+++| +
T Consensus 169 ~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~--------------------l~~~~~~~~~~~~~~~~------ 216 (432)
T 3a9z_A 169 LAAVRPT------TCLVTIMLANNETGVIMPISEISR--------------------RIKALNQIRAASGLPRV------ 216 (432)
T ss_dssp HHTCCTT------EEEEECCSBCTTTCBBCCHHHHHH--------------------HHHHHHHHHHHHTCCCC------
T ss_pred HHhccCC------ceEEEEECcccCcccccCHHHHHH--------------------HHHhcCcccccccCCce------
Confidence 9988643 678888999999999999999999 999999 9
Q ss_pred hhhhHHhhhcCC
Q psy11047 412 LAQKFEALVLGD 423 (943)
Q Consensus 412 lwLHVDAA~GG~ 423 (943)
|+|+|+||+.+
T Consensus 217 -~livDea~~~~ 227 (432)
T 3a9z_A 217 -LVHTDAAQALG 227 (432)
T ss_dssp -EEEEECTTTTT
T ss_pred -EEEEEchhhhC
Confidence 99999999654
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=173.31 Aligned_cols=312 Identities=10% Similarity=0.003 Sum_probs=195.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|..++.......++.+++++++|.+.. ..+||+|||+++..++.+... .. .+ ..
T Consensus 61 ~~~~~~~~~~~~~l~~~la~~~g~~~~----------~v~~~~g~t~al~~~~~~l~~----~~---~~---------gd 114 (406)
T 3cai_A 61 HPSARRSAAVLDAAREAVADLVNADPG----------GVVLGADRAVLLSLLAEASSS----RA---GL---------GY 114 (406)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTCCGG----------GEEEESCHHHHHHHHHHHTGG----GG---BT---------TC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCC----------eEEEeCChHHHHHHHHHHHhh----cc---CC---------CC
Confidence 333334566777889999999998643 689999999998766543210 00 11 23
Q ss_pred EEEecCCCchHHHHHHH-H---CCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 303 VAYCSDQAHSSVEKAGL-I---GLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~-L---G~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
.|+++..+|.++..+.. + .+.+++.++.+ +++.+|+++|++.|+++ +.+|+.+..++.+|.+.|+++|.
T Consensus 115 ~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~ 188 (406)
T 3cai_A 115 EVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKS------TRLVAVNSASGTLGGVTDLRAMT 188 (406)
T ss_dssp EEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTT------EEEEEEESBCTTTCBBCCCHHHH
T ss_pred EEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCC------ceEEEEeCCcCCccccCCHHHHH
Confidence 47778899998766652 2 23478899988 78999999999998643 67888899999999999999999
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhc
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNS 457 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~ 457 (943)
+ +|+++|+ |+++|+|++.. .. +
T Consensus 189 ~--------------------l~~~~~~-------~li~D~a~~~g-~~--~---------------------------- 210 (406)
T 3cai_A 189 K--------------------LVHDVGA-------LVVVDHSAAAP-YR--L---------------------------- 210 (406)
T ss_dssp H--------------------HHHHTTC-------EEEEECTTTTT-TC--C----------------------------
T ss_pred H--------------------HHHHcCC-------EEEEEcccccC-CC--C----------------------------
Confidence 9 9999999 99999999754 21 0
Q ss_pred cCcccccchhhhhcCCCCeeEEEEcCCCccCccCcc-hhhhhcccCccccccCCCCcccccC---cccc-CCCCCcchH-
Q psy11047 458 KGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSG-ALHRTFNVEPLYLRHENSGLAIDYM---HWQI-PLSKRFRAL- 531 (943)
Q Consensus 458 ~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~-~L~~af~~~p~YL~~~~~g~~~d~~---~~ti-e~SRrfrAL- 531 (943)
.+ ... + .+|.+++++|||++.+ .+ .+. ....++..-... ...++ ...+ .++-..-++
T Consensus 211 -----~~-~~~-~----~~d~~~~s~~K~~g~~-~G~~~~----~~~~~~~~l~~~-~~~~~~~~~~~~~~~t~~~~~~~ 273 (406)
T 3cai_A 211 -----LD-IRE-T----DADVVTVNAHAWGGPP-IGAMVF----RDPSVMNSFGSV-STNPYATGPARLEIGVHQFGLLA 273 (406)
T ss_dssp -----CC-HHH-H----CCSEEEEEGGGGTSCS-CEEEEE----SCHHHHHTSCCC-CSCTTCCGGGGGCCSCCCHHHHH
T ss_pred -----CC-chh-c----CCCEEEeehhhhcCCC-cCeEEE----EehHHHhhcCCc-ccCCCCCccccccCCCccHHHHH
Confidence 11 111 1 3699999999998743 32 221 011111000000 00000 0001 111111111
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcH
Q psy11047 532 KLWFVIRNFGIKG----------LQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKF 601 (943)
Q Consensus 532 klW~tLr~~G~~G----------l~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~ 601 (943)
.+-.++..+-..| +.+.++++. +.
T Consensus 274 a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~-----------------------~~----------------------- 307 (406)
T 3cai_A 274 GVVASIEYLAALDESARGSRRERLAVSMQSAD-----------------------AY----------------------- 307 (406)
T ss_dssp HHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHH-----------------------HH-----------------------
T ss_pred HHHHHHHHHHHhccccccchhhhhhhhHHHHH-----------------------HH-----------------------
Confidence 1111121111000 111112110 00
Q ss_pred HHHHHHHHHHHHHhCCCCeEEecCC--CccEEEEEecCCChHHHHHHHHHhccCcEEEeecc---------c-CCCcEEE
Q psy11047 602 QSVRLAQKFEALVLGDPRFEIPAAR--HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS---------L-RIQGLGR 669 (943)
Q Consensus 602 ~~~~LA~~l~~~L~~~p~~eIl~~~--~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~---------~-~g~~~lR 669 (943)
..++++++.+.|++.|++++..+. ..++++|++.+.+ ..++.+.|.++|. .+.+.. . .+..++|
T Consensus 308 -~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~~gi-~v~~g~~~~~~~~~g~~~~~~~iR 383 (406)
T 3cai_A 308 -LNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVP--ADRVVQRLADNGI-LAIANTGSRVLDVLGVNDVGGAVT 383 (406)
T ss_dssp -HHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBC--HHHHHHHHHHTTE-ECEECCSCHHHHHHTTTTTTCCEE
T ss_pred -HHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcC--HHHHHHHHHHCCc-EEecCChHHHHHHcCCCCCCCeEE
Confidence 356788899999999999987653 4778999987543 4678888888775 444321 1 1347899
Q ss_pred EeecCCCCHHHHHHHHHHHHHH
Q psy11047 670 AQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 670 ~v~~~~tt~edId~ll~~I~~~ 691 (943)
++++..++++||+++++.|+++
T Consensus 384 is~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 384 VGLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp EECCTTCCHHHHHHHHHHHHTC
T ss_pred EEeecCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998754
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-16 Score=170.12 Aligned_cols=311 Identities=12% Similarity=-0.007 Sum_probs=192.9
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
+|.......++.+++++++|.+.. ...++|+|||+|+..++.+.. .+| -.|+
T Consensus 47 ~~~~~~~~~~l~~~la~~~g~~~~---------~~i~~~~g~t~a~~~~~~~~~----------~~g---------d~vl 98 (393)
T 2huf_A 47 HPETLKIMDDIKEGVRYLFQTNNI---------ATFCLSASGHGGMEATLCNLL----------EDG---------DVIL 98 (393)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCCS---------EEEEESSCHHHHHHHHHHHHC----------CTT---------CEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC---------cEEEEcCcHHHHHHHHHHHHh----------CCC---------CEEE
Confidence 455667788899999999998642 157899999999988877641 122 2466
Q ss_pred ecCCCchHHH--HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 306 CSDQAHSSVE--KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 306 ~S~~aHySv~--KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+++.+|++.. +.+...+..++.++.+.++.+|+++|+++|++. .+.+|+.+..++.+|.+.|+++|.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~----- 168 (393)
T 2huf_A 99 IGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIH-----KPSVLFLTQGDSSTGVLQGLEGVGA----- 168 (393)
T ss_dssp EEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHH-----
T ss_pred EECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhcc-----CCcEEEEEccCCCccccCCHHHHHH-----
Confidence 7778898842 222223347889999888899999999999862 1567888888999999999999999
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccc
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHC 463 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~ 463 (943)
+|++||+ |+++|++++.. .. ..
T Consensus 169 ---------------~~~~~~~-------~li~D~a~~~~-~~-----------------------------------~~ 190 (393)
T 2huf_A 169 ---------------LCHQHNC-------LLIVDTVASLG-GA-----------------------------------PM 190 (393)
T ss_dssp ---------------HHHHTTC-------EEEEECTTTBT-TB-----------------------------------CC
T ss_pred ---------------HHHHcCC-------EEEEEcccccC-CC-----------------------------------Cc
Confidence 9999999 99999997643 11 00
Q ss_pred cchhhhhcCCCCeeEEEEcCCCccC-ccCcc------hhhhhcccC----ccccccCCCCcccc-cCc---ccc-CCCCC
Q psy11047 464 VPASLRIQGLGRAQNFTIVPSSLLR-VKNSG------ALHRTFNVE----PLYLRHENSGLAID-YMH---WQI-PLSKR 527 (943)
Q Consensus 464 p~~r~~l~Gie~ADSItiDpHK~L~-vr~~~------~L~~af~~~----p~YL~~~~~g~~~d-~~~---~ti-e~SRr 527 (943)
. +.. ..+|.+++++|||++ ...-+ .+.+.+... .+|..... ...+ ++. ... .++-.
T Consensus 191 ~-----~~~-~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 262 (393)
T 2huf_A 191 F-----MDR-WEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMS--LVGDYWGCFGRPRIYHHTIS 262 (393)
T ss_dssp C-----TTT-TTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHH--HHHHHTTCSSSCCCCSCCCC
T ss_pred c-----hhh-cCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchH--HHHhhhccccccCCCCCCCC
Confidence 0 111 147999999999865 11111 111111110 11111000 0000 000 000 01111
Q ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHH
Q psy11047 528 FR-ALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRL 606 (943)
Q Consensus 528 fr-ALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~L 606 (943)
.- ...+..+++.+...++.+..++ ..++
T Consensus 263 ~~~~~a~~~al~~~~~~~~~~~~~~---------------------------------------------------~~~~ 291 (393)
T 2huf_A 263 STLLYGLREAIAMACEEGLPALIAR---------------------------------------------------HEDC 291 (393)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHH---------------------------------------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHH---------------------------------------------------HHHH
Confidence 11 1122223333332334444433 2456
Q ss_pred HHHHHHHHhCCCCeEEecCC--Cc-cEEEEEec-CCChHHHHHHHHHhcc-CcEEEeecc-cCCCcEEEEee-cCCCCHH
Q psy11047 607 AQKFEALVLGDPRFEIPAAR--HL-GMVVIRLL-GENILTEKLLKRLNSK-GRLHCVPAS-LRIQGLGRAQN-FTRTTND 679 (943)
Q Consensus 607 A~~l~~~L~~~p~~eIl~~~--~l-~iV~Fr~~-g~n~l~~~Ll~~L~~~-G~~~~s~t~-~~g~~~lR~v~-~~~tt~e 679 (943)
++++.+.|++. ++++..++ .. ++++|+++ +.+ ..++.++|.++ |. ++.+.. ..+..++|+++ ++.++++
T Consensus 292 ~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~~~gi-~v~~g~~~~~~~~~Ri~~~~~~~~~e 367 (393)
T 2huf_A 292 AKRLYRGLQDA-GFELYADPKDRLSTVTTIKVPQGVD--WLKAAQYAMKTYLV-EISGGLGPTAGQVFRIGLMGQNATTE 367 (393)
T ss_dssp HHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECCTTCC--HHHHHHHHHHHHCE-ECBCCCGGGTTTEEEEECCGGGCSHH
T ss_pred HHHHHHHHHHc-CCeeccCccccCCcEEEEEcCCCCC--HHHHHHHHHHhCCE-EEecCcccccCCEEEEEcccCcCCHH
Confidence 67777777776 77776543 23 48888885 333 46788888765 74 444322 12457999977 5567899
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11047 680 DITRDWNEIRNTATEI 695 (943)
Q Consensus 680 dId~ll~~I~~~~~~l 695 (943)
+++++++.|+++.+++
T Consensus 368 ~i~~~~~~l~~~~~~~ 383 (393)
T 2huf_A 368 RVDRVLQVFQEAVAAV 383 (393)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999998876543
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-16 Score=167.46 Aligned_cols=304 Identities=9% Similarity=-0.045 Sum_probs=192.3
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.++.......++.+++++++|.+.+ ..++|+|||+|+..++.+.. .+| -.|
T Consensus 28 ~~~~~~~~~~~l~~~la~~~g~~~~----------~i~~~~g~t~a~~~~~~~~~----------~~g---------d~v 78 (352)
T 1iug_A 28 RTEAAREVFLKARGLLREAFRTEGE----------VLILTGSGTLAMEALVKNLF----------APG---------ERV 78 (352)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCSSE----------EEEEESCHHHHHHHHHHHHC----------CTT---------CEE
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCc----------eEEEcCchHHHHHHHHHhcc----------CCC---------CeE
Confidence 4566667778899999999998743 58999999999988877641 122 247
Q ss_pred EecCCCchHHH--HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 305 YCSDQAHSSVE--KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 305 ~~S~~aHySv~--KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
++++.+|++.. +.+...+.+++.++++.++.+|+++|++ . .+.+|+.+..++.+|.+.|+++|.+
T Consensus 79 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~------~~~~v~~~~~~nptG~~~~l~~i~~---- 145 (352)
T 1iug_A 79 LVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK---E------GYAGLLLVHSETSTGALADLPALAR---- 145 (352)
T ss_dssp EEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC---S------SCSEEEEESEETTTTEECCHHHHHH----
T ss_pred EEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc---c------CCcEEEEEEecCCcceecCHHHHHH----
Confidence 77888999975 2222233488999998889999988876 1 2567888899999999999999999
Q ss_pred cccccccccccCchHHHHHHc--CCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSY--FPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGR 460 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~--Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~ 460 (943)
+|++| |+ |+|+|++++.. .. +
T Consensus 146 ----------------l~~~~~~~~-------~li~D~a~~~~-~~--~------------------------------- 168 (352)
T 1iug_A 146 ----------------AFKEKNPEG-------LVGADMVTSLL-VG--E------------------------------- 168 (352)
T ss_dssp ----------------HHHHHCTTC-------EEEEECTTTBT-TB--C-------------------------------
T ss_pred ----------------HHHhhCCCC-------EEEEECCcccc-Cc--c-------------------------------
Confidence 99999 99 99999998743 21 0
Q ss_pred ccccchhhhhcCCCCeeEEEEcCCCccCccCc-chhhhhcccCccccccC-CCCcccccC-------ccccCCCCCcch-
Q psy11047 461 LHCVPASLRIQGLGRAQNFTIVPSSLLRVKNS-GALHRTFNVEPLYLRHE-NSGLAIDYM-------HWQIPLSKRFRA- 530 (943)
Q Consensus 461 ~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~-~~L~~af~~~p~YL~~~-~~g~~~d~~-------~~tie~SRrfrA- 530 (943)
.+ .. .. .+|.++.++|||++...+ +.+. .....+..- ..+...++. .....++-..-+
T Consensus 169 --~~-~~----~~-~~d~~~~s~~K~~~~~~g~G~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T 1iug_A 169 --VA-LE----AM-GVDAAASGSQKGLMCPPGLGFVA----LSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLV 236 (352)
T ss_dssp --CC-SG----GG-TCSEEEEESSSTTCCCSCEEEEE----ECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHH
T ss_pred --ee-cc----cc-CeeEEEecCcccccCCCceeEEE----ECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHH
Confidence 11 11 11 369999999997762111 1110 000000000 000000000 000011111101
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHH
Q psy11047 531 LKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKF 610 (943)
Q Consensus 531 LklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l 610 (943)
..+..++..+... +.+..++ ..++++++
T Consensus 237 ~a~~~al~~~~~~-~~~~~~~---------------------------------------------------~~~~~~~l 264 (352)
T 1iug_A 237 LAVAAVLEEVLPR-LEEHLAL---------------------------------------------------KAWQNALL 264 (352)
T ss_dssp HHHHHHHHHHGGG-HHHHHHH---------------------------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHH---------------------------------------------------HHHHHHHH
Confidence 1111222221111 2222222 24567778
Q ss_pred HHHHhCCCCeEEecCC-CccEEEEEec-CCChHHHHHHHHHhccCcEEEeeccc-CCCcEEEEeecCCCCHHHHHHHHHH
Q psy11047 611 EALVLGDPRFEIPAAR-HLGMVVIRLL-GENILTEKLLKRLNSKGRLHCVPASL-RIQGLGRAQNFTRTTNDDITRDWNE 687 (943)
Q Consensus 611 ~~~L~~~p~~eIl~~~-~l~iV~Fr~~-g~n~l~~~Ll~~L~~~G~~~~s~t~~-~g~~~lR~v~~~~tt~edId~ll~~ 687 (943)
.+.|++. ++++..+. ..+++.|+++ +.+ ..++.++|.++|. ++.+... .+..++|++++..++++|++++++.
T Consensus 265 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi-~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 340 (352)
T 1iug_A 265 YGVGEEG-GLRPVPKRFSPAVAAFYLPEGVP--YARVKEAFAQRGA-VIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGM 340 (352)
T ss_dssp HHHHHHT-TCEESCSSBCTTCEEEECCTTCC--HHHHHHHHHTTTE-ECEECCGGGTTTEEEECCCSSCCHHHHHHHHHH
T ss_pred HHHHHHC-CCcccccccCCeEEEEEcCCCCC--HHHHHHHHHHCCE-EEEeCCCccCCCEEEEEccccCCHHHHHHHHHH
Confidence 8888777 88887654 6778999986 333 4678888888875 4544321 2457899988888999999999999
Q ss_pred HHHHHHHH
Q psy11047 688 IRNTATEI 695 (943)
Q Consensus 688 I~~~~~~l 695 (943)
|+++.+++
T Consensus 341 l~~~~~~~ 348 (352)
T 1iug_A 341 FREVLEEI 348 (352)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99887654
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-17 Score=172.10 Aligned_cols=305 Identities=9% Similarity=-0.026 Sum_probs=188.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
.....+...+.+|+++++|.+.+ ..+||+|||+|+..++.+++. +| -.|++
T Consensus 45 ~g~~~~~~~~~~~l~~~~g~~~~----------~v~~~~g~t~a~~~~~~~~~~----------~g---------d~vl~ 95 (359)
T 1svv_A 45 YGQDSHCAKAARLIGELLERPDA----------DVHFISGGTQTNLIACSLALR----------PW---------EAVIA 95 (359)
T ss_dssp TTCSHHHHHHHHHHHHHHTCTTS----------EEEEESCHHHHHHHHHHHHCC----------TT---------EEEEE
T ss_pred ccccHHHHHHHHHHHHHhCCCCc----------cEEEeCCchHHHHHHHHHHhC----------CC---------CEEEE
Confidence 33456778899999999997643 689999999999998876531 22 35788
Q ss_pred cCCCchHHHHH--HHHCCccEEEEecCCCCCcCHHHHHHHHHHhh-ccCCCcEEEEEecCCCccccccc---HHHhhhhc
Q psy11047 307 SDQAHSSVEKA--GLIGLVNMRYIESDDKLSLRGDKLIEAIERDK-KKHLIPFFIFSGLALPAFLVVDS---YCCLGTAM 380 (943)
Q Consensus 307 S~~aHySv~KA--a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~-~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~ 380 (943)
++.+|++...+ +...+.+++.+|.+ ++.+|+++|++.|+++. .++..+.+|+.+.. +.+|.+.| +++|.+
T Consensus 96 ~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~-- 171 (359)
T 1svv_A 96 TQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISA-- 171 (359)
T ss_dssp ETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHH--
T ss_pred cccchHHHHHHHHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHH--
Confidence 89999998884 44334488899986 78999999999998752 23334667777766 57899887 888888
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcc-ccccccccceeeeeecchhhhHHHHHHHhhccC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF-EIPAARHLGMVVIRLLGENILTEKLLKRLNSKG 459 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~af-eLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G 459 (943)
+|++||+ |+|+|++++++ .+ .++
T Consensus 172 ------------------~~~~~~~-------~li~De~~~~~-~~~~~~------------------------------ 195 (359)
T 1svv_A 172 ------------------SCKEHGL-------YLFLDGARLAS-ALSSPV------------------------------ 195 (359)
T ss_dssp ------------------HHHHHTC-------EEEEECTTHHH-HHTSTT------------------------------
T ss_pred ------------------HHHHhCC-------EEEEEccchhh-hhcCCC------------------------------
Confidence 9999999 99999998543 11 000
Q ss_pred cccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHH
Q psy11047 460 RLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRN 539 (943)
Q Consensus 460 ~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~ 539 (943)
..... ..+. ..+|++++++||+++....+.+ ..++..+..-.. ......+....+. .....+ ...
T Consensus 196 --~~~~~-~~~~--~~~d~~~~s~~K~g~~~~~g~l----~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~--~~~ 260 (359)
T 1svv_A 196 --NDLTL-ADIA--RLTDMFYIGATKAGGMFGEALI----ILNDALKPNARH--LIKQRGALMAKGW--LLGIQF--EVL 260 (359)
T ss_dssp --CCCCH-HHHH--HHCSEEEEECTTTTCSSCEEEE----ECSGGGCTTHHH--HHHHTTCCCTTTH--HHHHHH--HHH
T ss_pred --cchhh-hhhh--hcCCEEEEecccCCCCCceEEE----EEcccHHHHHHH--HHhcCCcccccch--hhHHHH--HHH
Confidence 00000 0000 2469999999999773221111 000111000000 0000000011010 011000 011
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCC
Q psy11047 540 FGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPR 619 (943)
Q Consensus 540 ~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~ 619 (943)
+...++.+..++ ..++++++.+.| +.++
T Consensus 261 l~~~~~~~~~~~---------------------------------------------------~~~~~~~l~~~L-~~~~ 288 (359)
T 1svv_A 261 MKDNLFFELGAH---------------------------------------------------SNKMAAILKAGL-EACG 288 (359)
T ss_dssp TSTTHHHHHHHH---------------------------------------------------HHHHHHHHHHHH-HHTT
T ss_pred HhhhhHHHHHHH---------------------------------------------------HHHHHHHHHHHh-ccCC
Confidence 111122222222 245667777777 5678
Q ss_pred eEEecCCCccEEEEEecCCChHHHHHHHHHhcc-CcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 620 FEIPAARHLGMVVIRLLGENILTEKLLKRLNSK-GRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 620 ~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~-G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+++..+...+.+.+++. .++.++|.++ |.+.... ...+..++|++++..+++++|+++++.|+++.++
T Consensus 289 ~~~~~~~~~~~~~~~~~------~~~~~~l~~~~gi~v~~~-~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 289 IRLAWPSASNQLFPILE------NTMIAELNNDFDMYTVEP-LKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp CCBSSCCSSSEECBEEE------HHHHHHHTTTEECEEEEE-ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred eEEccCCccceEEEEcC------HHHHHHHHHhcCEEEEec-ccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 88887777777777663 4788888888 8755321 1234678999988889999999999999877543
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=178.39 Aligned_cols=328 Identities=12% Similarity=0.040 Sum_probs=207.4
Q ss_pred EccCCCC-hHHHHHHHHHHHH--hccCc-cc---cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE-cCChH
Q psy11047 197 YFPALNS-YPSLLGDMLSDAI--NCLGF-TW---ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL-QTTAS 268 (943)
Q Consensus 197 ~~~~~~s-~~silgd~L~~al--N~n~~-~~---~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf-TsGGT 268 (943)
|-+++.. ++.++..|..... +.|+. .+ ..++.+.++-.++++.+++++|.+++ ...+| |+|||
T Consensus 9 f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~---------~~v~f~t~~~T 79 (361)
T 3m5u_A 9 FSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDD---------YEVLFLQGGAS 79 (361)
T ss_dssp CCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTT---------EEEEEESSHHH
T ss_pred ecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCC---------ceEEEEcCcHH
Confidence 4444443 4556555554433 22322 11 22566777777899999999999753 25788 99999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCC--cCHHHHHHHHH
Q psy11047 269 ESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLS--LRGDKLIEAIE 346 (943)
Q Consensus 269 eANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~gr--mD~daLe~aI~ 346 (943)
+|+..++... + ++ + .-.+++++..+|.++..+...| .++..|+++..+. ++++. + |+
T Consensus 80 ~a~n~~~~~~----~-------~~---~---~~~~i~~~~~~~~~~~~a~~~G-~~v~~~~~~~~g~~~~~~~~-~--l~ 138 (361)
T 3m5u_A 80 LQFAMIPMNL----A-------LN---G---VCEYANTGVWTKKAIKEAQILG-VNVKTVASSEESNFDHIPRV-E--FS 138 (361)
T ss_dssp HHHHHHHHHH----C-------CS---S---CEEEEECSHHHHHHHHHHHHTT-CCEEEEEECTTTTSCSCCCC-C--CC
T ss_pred HHHHHHHHhc----C-------CC---C---eEEEEeCCHHHHHHHHHHHHcC-CceEEEecccCcCCCcCChh-h--cC
Confidence 9998776632 0 11 0 1235666666675555554556 4889999988774 56655 3 54
Q ss_pred HhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcc
Q psy11047 347 RDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 426 (943)
Q Consensus 347 ~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~af 426 (943)
++ +.+|+.++..|.+|.+.| .|++ +|+ ++||||+++.. ..
T Consensus 139 ~~------t~lv~~~~~e~~tG~~~~--~i~~------------------------~~~-------~~~vD~~q~~g-~~ 178 (361)
T 3m5u_A 139 DN------ADYAYICSNNTIYGTQYQ--NYPK------------------------TKT-------PLIVDASSDFF-SR 178 (361)
T ss_dssp TT------SSEEEEESEETTTTEECS--SCCC------------------------CSS-------CEEEECGGGTT-SS
T ss_pred CC------CCEEEEeCCCCCcceeCC--cccc------------------------cCC-------EEEEEcccccC-CC
Confidence 43 567888999999999855 2433 488 99999999766 32
Q ss_pred ccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcch-------hhhhc
Q psy11047 427 EIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGA-------LHRTF 499 (943)
Q Consensus 427 eLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~-------L~~af 499 (943)
| .+ ++.+|.+++++|||++.+.-.. +...-
T Consensus 179 --~---------------------------------id--------~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~ 215 (361)
T 3m5u_A 179 --K---------------------------------VD--------FSNIALFYGGVQKNAGISGLSCIFIRKDMLERSK 215 (361)
T ss_dssp --C---------------------------------CC--------CTTEEEEEEETTTTSSCTTCEEEEEEHHHHHHHH
T ss_pred --C---------------------------------CC--------cccCCEEEEechhccCCCccEEEEEcHHHHhhhc
Confidence 1 10 2246999999999999322211 11110
Q ss_pred c-cCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc-chhhhhc
Q psy11047 500 N-VEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCL-GTAMIVK 577 (943)
Q Consensus 500 ~-~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~-g~~~i~~ 577 (943)
. ..|.|+ ++....-..+|. .|....|+.|+.+.++.+.+ . |++.|.+
T Consensus 216 ~~~~p~~~---------~~~~~~~~~~~~-------~Tp~v~~i~~l~~al~~l~~---------------~gG~~~i~~ 264 (361)
T 3m5u_A 216 NKQIPSML---------NYLTHAENQSLF-------NTPPTFAIYMFNLEMDWLLN---------------QGGLDKVHE 264 (361)
T ss_dssp TCCCCGGG---------CHHHHHHTTTCS-------SCCCHHHHHHHHHHHHHHHT---------------TTCHHHHHH
T ss_pred CCCCCcee---------ehHHHhhcCCCC-------CCccHHHHHHHHHHHHHHHH---------------ccCHHHHHH
Confidence 0 112221 111000011221 24556677788888887543 3 4555544
Q ss_pred ccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCe-EEecCC---CccEEEEEecCCChHHHHHHHHHhccC
Q psy11047 578 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF-EIPAAR---HLGMVVIRLLGENILTEKLLKRLNSKG 653 (943)
Q Consensus 578 ~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~-eIl~~~---~l~iV~Fr~~g~n~l~~~Ll~~L~~~G 653 (943)
+ ..+|++++.+.|.+++++ +++.++ ..++++|++++...+...+...|.++|
T Consensus 265 ~------------------------~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~L~~~g 320 (361)
T 3m5u_A 265 K------------------------NSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAG 320 (361)
T ss_dssp H------------------------HHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSCTTHHHHHHHHHHHTT
T ss_pred H------------------------HHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCchhhhHHHHHHHHHCC
Confidence 3 578999999999999876 665432 246899999862233457888888887
Q ss_pred cEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 654 RLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 654 ~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
.. +.. .....+.+|++++.++|.+||+++++.|+++.++
T Consensus 321 I~-~~~-g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 321 MI-GLK-GHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp EE-CCB-CCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CE-Eec-CCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 53 322 2222356999999999999999999999988654
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=176.98 Aligned_cols=299 Identities=12% Similarity=0.052 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
..+...+.+|+++++| ++ ...+||+|||+||..++.+++ .+ .-.|+++..
T Consensus 42 ~~~~~~l~~~la~~~g-~~----------~~v~~~~~gt~a~~~al~~~~----------~~---------gd~vi~~~~ 91 (356)
T 1v72_A 42 DELTAQVKRKFCEIFE-RD----------VEVFLVPTGTAANALCLSAMT----------PP---------WGNIYCHPA 91 (356)
T ss_dssp SHHHHHHHHHHHHHHT-SC----------CEEEEESCHHHHHHHHHHTSC----------CT---------TEEEEECTT
T ss_pred chHHHHHHHHHHHHhC-CC----------CcEEEeCCccHHHHHHHHHhc----------CC---------CCEEEEcCc
Confidence 3556678889999999 42 247999999999988877542 12 235777888
Q ss_pred CchHHHHH--H-HHC-CccEEEEecCCCCCcCHHHHHH-HHHHhh-ccCCCcEEEEEecCCCcccc---cccHHHhhhhc
Q psy11047 310 AHSSVEKA--G-LIG-LVNMRYIESDDKLSLRGDKLIE-AIERDK-KKHLIPFFIFSGLALPAFLV---VDSYCCLGTAM 380 (943)
Q Consensus 310 aHySv~KA--a-~LG-~~~v~~Vp~D~~grmD~daLe~-aI~~d~-~kG~~P~~VVaTaGTT~tGa---IDpL~eIa~~~ 380 (943)
+|++..++ + .+. +..++.+|.+ ++.+|+++|++ +|++.. ..+..+.+|+.+.. +++|. .+++++|.+
T Consensus 92 ~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~-~~tG~~~~~~~l~~i~~-- 167 (356)
T 1v72_A 92 SHINNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQA-TEVGSIYTLDEIEAIGD-- 167 (356)
T ss_dssp SHHHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHH--
T ss_pred cchhhhhchHHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcC-CCCCccCCHHHHHHHHH--
Confidence 99998776 5 452 4578888875 58999999999 886521 12223677777774 46998 677888888
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCc
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGR 460 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~ 460 (943)
+|++||+ |+|+|++|+.+ .+. . .|
T Consensus 168 ------------------~~~~~~~-------~li~D~a~~~~-~~~--~---------------------------~~- 191 (356)
T 1v72_A 168 ------------------VCKSSSL-------GLHMDGSRFAN-ALV--S---------------------------LG- 191 (356)
T ss_dssp ------------------HHHHTTC-------EEEEEETTHHH-HHH--H---------------------------HT-
T ss_pred ------------------HHHHcCC-------eEEEEchhhHh-Hhc--c---------------------------CC-
Confidence 9999999 99999998743 110 0 00
Q ss_pred ccccchhhhhcCC-CCeeEEEEcCCCccCccCc-chhhhhcccCccccccCCCCcccccCccccCCC-CCcchHHHHHHH
Q psy11047 461 LHCVPASLRIQGL-GRAQNFTIVPSSLLRVKNS-GALHRTFNVEPLYLRHENSGLAIDYMHWQIPLS-KRFRALKLWFVI 537 (943)
Q Consensus 461 ~~~p~~r~~l~Gi-e~ADSItiDpHK~L~vr~~-~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~S-RrfrALklW~tL 537 (943)
..+. ..++ ..+|.+++++||+++ +-. ..+. .++..+..-. .... ..+. .......+...+
T Consensus 192 -~~~~----~~~~~~~~d~~~~s~sK~g~-~~G~g~~~----~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~ 254 (356)
T 1v72_A 192 -CSPA----EMTWKAGVDALSFGATKNGV-LAAEAIVL----FNTSLATEMS-----YRRK--RAGHLSSKMRFLSAQID 254 (356)
T ss_dssp -CCTT----TTTGGGTCCEEEECCGGGTC-SSCEEEEE----SSGGGHHHHH-----HHHH--HTTCCCSSTHHHHHHHH
T ss_pred -CCHH----HhhhhhcCCEEEEecccCCC-cCccEEEE----ECHHHHhhHH-----HHhh--ccCchhhhHHHHHHHHH
Confidence 0000 0111 257999999999943 332 1110 0111110000 0000 0000 000001111111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCC
Q psy11047 538 RNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 617 (943)
Q Consensus 538 r~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~ 617 (943)
+.+....+.+++++ ..++++++.+.|.++
T Consensus 255 ~~l~~~~~~~~~~~---------------------------------------------------~~~~~~~l~~~L~~~ 283 (356)
T 1v72_A 255 AYLTDDLWLRNARK---------------------------------------------------ANAAAQRLAQGLEGL 283 (356)
T ss_dssp HHTSTTHHHHHHHH---------------------------------------------------HHHHHHHHHHHHTTC
T ss_pred HHHHhhhHHHHHHH---------------------------------------------------HHHHHHHHHHHHhhC
Confidence 11111112222222 245778888899888
Q ss_pred CCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 618 PRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 618 p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+++++..+...+++.+++. ..+.++|.++|.+ +.+..+. ..++|++++..+++++++++++.|+++.++
T Consensus 284 ~g~~~~~~~~~~~~~~~~~------~~~~~~l~~~gi~-v~~g~~~-~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 284 GGVEVLGGTEANILFCRLD------SAMIDALLKAGFG-FYHDRWG-PNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp TTEEEESCCCSSEEEEEEC------HHHHHHHHHTTCB-CBCSSSS-TTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred CCcEEccCCCccEEEEEcC------HHHHHHHHhcCeE-EeccccC-CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 9999987778888888874 3677788777864 3322232 579999999999999999999999877543
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-16 Score=169.86 Aligned_cols=307 Identities=9% Similarity=-0.021 Sum_probs=197.0
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
++...++...+.+++++++|.+.+ ...++|+|||+|+..++.+.. .+| -.|+
T Consensus 62 ~~~~~~~~~~~~~~la~~~g~~~~---------~~v~~t~g~t~al~~~~~~~~----------~~g---------d~Vl 113 (393)
T 1vjo_A 62 DPAFLALMDEIQSLLRYVWQTENP---------LTIAVSGTGTAAMEATIANAV----------EPG---------DVVL 113 (393)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCCS---------CEEEESSCHHHHHHHHHHHHC----------CTT---------CEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC---------cEEEEeCchHHHHHHHHHhcc----------CCC---------CEEE
Confidence 455677888999999999998632 158999999999988887642 122 2466
Q ss_pred ecCCCchH--HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 306 CSDQAHSS--VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 306 ~S~~aHyS--v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+++.+|++ +..++...+.+++.++.+.++.+|+++|+++|++. .+.+|+.+...+.+|.+.|+++|.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~l~~i~~----- 183 (393)
T 1vjo_A 114 IGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETH-----RPAILALVHAETSTGARQPLEGVGE----- 183 (393)
T ss_dssp EEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHH-----
T ss_pred EEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhC-----CceEEEEeccCCCcceeccHHHHHH-----
Confidence 77888988 77777544458899999888999999999999863 1557788888899999999999999
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccc
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHC 463 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~ 463 (943)
+|++||+ |+++|++|+.. .. + .
T Consensus 184 ---------------l~~~~~~-------~li~Dea~~~g-~~--~---------------------------------~ 205 (393)
T 1vjo_A 184 ---------------LCREFGT-------LLLVDTVTSLG-GV--P---------------------------------I 205 (393)
T ss_dssp ---------------HHHHHTC-------EEEEECTTTTT-TS--C---------------------------------C
T ss_pred ---------------HHHHcCC-------EEEEECCcccc-Cc--C---------------------------------C
Confidence 9999999 99999999833 21 1 0
Q ss_pred cchhhhhcCCCCeeEEEEcCCCccCccCc-ch------hhhhccc-----CccccccCCCCccccc-CccccCC-CCC-c
Q psy11047 464 VPASLRIQGLGRAQNFTIVPSSLLRVKNS-GA------LHRTFNV-----EPLYLRHENSGLAIDY-MHWQIPL-SKR-F 528 (943)
Q Consensus 464 p~~r~~l~Gie~ADSItiDpHK~L~vr~~-~~------L~~af~~-----~p~YL~~~~~g~~~d~-~~~tie~-SRr-f 528 (943)
+ +.. ..+|.++.++||+++...+ +. +.+.+.. .+.|.... ....+ ....... +-. .
T Consensus 206 ~-----~~~-~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~ 276 (393)
T 1vjo_A 206 F-----LDA-WGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMN---LLGKYWGSERVYHHTAPIN 276 (393)
T ss_dssp C-----TTT-TTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHH---HHHHHHSTTCCCCSCCCHH
T ss_pred c-----ccc-cCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCcH---hhhhhhccCCCCCCCCCHH
Confidence 0 111 2579999999998872221 11 1111100 01011000 00000 0001111 111 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHH
Q psy11047 529 RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 608 (943)
Q Consensus 529 rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~ 608 (943)
....++.+++.+...++.+..++ ..++++
T Consensus 277 ~~~a~~~al~~~~~~~~~~~~~~---------------------------------------------------~~~~~~ 305 (393)
T 1vjo_A 277 LYYALREALRLIAQEGLANCWQR---------------------------------------------------HQKNVE 305 (393)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHH---------------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHH---------------------------------------------------HHHHHH
Confidence 12233344444333334444433 235667
Q ss_pred HHHHHHhCCCCeEEecCCC---ccEEEEEec-CCChHHHHHHHHHhcc-CcEEEeec-ccCCCcEEEEe-ecCCCCHHHH
Q psy11047 609 KFEALVLGDPRFEIPAARH---LGMVVIRLL-GENILTEKLLKRLNSK-GRLHCVPA-SLRIQGLGRAQ-NFTRTTNDDI 681 (943)
Q Consensus 609 ~l~~~L~~~p~~eIl~~~~---l~iV~Fr~~-g~n~l~~~Ll~~L~~~-G~~~~s~t-~~~g~~~lR~v-~~~~tt~edI 681 (943)
++.+.|++. ++++..+.. .++++|+++ +.+ ...+.++|.++ |.+ +.+. ......++|++ ....++++++
T Consensus 306 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~gi~-v~~g~~~~~~~~iRis~~~~~~~~~~i 381 (393)
T 1vjo_A 306 YLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDGVD--GKAVARRLLNEHNIE-VGGGLGELAGKVWRVGLMGFNSRKESV 381 (393)
T ss_dssp HHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTTCC--HHHHHHHHHHHHCEE-CEECCGGGTTTEEEEECCGGGCSHHHH
T ss_pred HHHHHHHHc-CCcccCCccccCCcEEEEEcCCCCC--HHHHHHHHHhhCCEE-EecCccccCCCEEEEeCCccCChHHHH
Confidence 777777766 777765432 478888885 322 46788888887 754 4432 22346799996 5667788899
Q ss_pred HHHHHHHHHHH
Q psy11047 682 TRDWNEIRNTA 692 (943)
Q Consensus 682 d~ll~~I~~~~ 692 (943)
+++++.|+++.
T Consensus 382 ~~~~~~l~~~l 392 (393)
T 1vjo_A 382 DQLIPALEQVL 392 (393)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988753
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-16 Score=169.57 Aligned_cols=344 Identities=8% Similarity=-0.068 Sum_probs=203.4
Q ss_pred CceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHH
Q psy11047 192 PYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASEST 271 (943)
Q Consensus 192 Prf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeAN 271 (943)
|+.+.+.+++...+..+.+.+..... .+ .+|........++++++++++.... .+....+||+|||+|+
T Consensus 4 ~~~~~~~p~p~~~~~~v~~a~~~~~~----~~-~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~v~~~~g~t~al 72 (385)
T 2bkw_A 4 SVDTLLIPGPIILSGAVQKALDVPSL----GH-TSPEFVSIFQRVLKNTRAVFKSAAA------SKSQPFVLAGSGTLGW 72 (385)
T ss_dssp CCCEECSSSSCCCCHHHHHTTSCCCC----CT-TSHHHHHHHHHHHHHHHHHTTCCGG------GTCEEEEEESCTTHHH
T ss_pred ccceeecCCCcCchHHHHHHHhcccc----cc-CCHHHHHHHHHHHHHHHHHhCCCCC------CCCceEEEcCchHHHH
Confidence 45566666655443333333322221 12 2666666666788999999987521 0112689999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe-cCCCchHHHHHHHHCCccEEEEec-CCCCCcCHHHHHHHHHHhh
Q psy11047 272 LICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC-SDQAHSSVEKAGLIGLVNMRYIES-DDKLSLRGDKLIEAIERDK 349 (943)
Q Consensus 272 L~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~-S~~aHySv~KAa~LG~~~v~~Vp~-D~~grmD~daLe~aI~~d~ 349 (943)
..++.+.... ..+| +-+++. +...|.++.+++...+.+++.+++ +.++.+|+++|+++|++.
T Consensus 73 ~~~~~~~~~~-------~~~g--------d~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~- 136 (385)
T 2bkw_A 73 DIFASNFILS-------KAPN--------KNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQN- 136 (385)
T ss_dssp HHHHHHHSCT-------TCSC--------CEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHS-
T ss_pred HHHHHHHhcc-------CCCC--------CeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcC-
Confidence 8887764200 0122 223343 334555555555443448899999 889999999999999862
Q ss_pred ccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHc--CCCCCccchhhhHHhhhcCCCccc
Q psy11047 350 KKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSY--FPKFQSVRLAQKFEALVLGDPRFE 427 (943)
Q Consensus 350 ~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~--Gl~~~~l~lwLHVDAA~GG~~afe 427 (943)
.+.+|+.+..++.+|.+.|+++|.+ +|++| |+ |+|+|++++.. ..
T Consensus 137 ----~~~~v~~~~~~nptG~~~~l~~i~~--------------------~~~~~~~~~-------~li~D~a~~~~-~~- 183 (385)
T 2bkw_A 137 ----SYGAVTVTHVDTSTAVLSDLKAISQ--------------------AIKQTSPET-------FFVVDAVCSIG-CE- 183 (385)
T ss_dssp ----CCSEEEEESEETTTTEECCHHHHHH--------------------HHHHHCTTS-------EEEEECTTTTT-TS-
T ss_pred ----CCCEEEEEccCCCcCeEcCHHHHHH--------------------HHHhhCCCC-------EEEEECccccC-Cc-
Confidence 1567888889999999999999999 99999 99 99999999754 21
Q ss_pred cccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC-ccCcchh------hh-hc
Q psy11047 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR-VKNSGAL------HR-TF 499 (943)
Q Consensus 428 Lp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-vr~~~~L------~~-af 499 (943)
+ .+ +... .+|.+++++|||++ ...-+.+ .. .+
T Consensus 184 -~---------------------------------~~-----~~~~-~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l 223 (385)
T 2bkw_A 184 -E---------------------------------FE-----FDEW-GVDFALTASQKAIGAPAGLSISLCSSRFMDYAL 223 (385)
T ss_dssp -C---------------------------------CC-----TTTT-TCSEEEEESSSTTCCCSCEEEEEECHHHHHHHT
T ss_pred -c---------------------------------cc-----cccc-CceEEEecCccccccCCcceEEEEcHHHHHHHH
Confidence 0 11 1111 47999999999776 2111111 01 11
Q ss_pred cc---CccccccCCCCcccc-c-Ccccc-----CCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc
Q psy11047 500 NV---EPLYLRHENSGLAID-Y-MHWQI-----PLSKRF-RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYC 568 (943)
Q Consensus 500 ~~---~p~YL~~~~~g~~~d-~-~~~ti-----e~SRrf-rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~ 568 (943)
.. .+.. .......... . ..+.. .++-.. ....+..+++.+...|+.+.+++
T Consensus 224 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~----------------- 285 (385)
T 2bkw_A 224 NDSKNGHVH-GYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDL----------------- 285 (385)
T ss_dssp CHHHHCCCS-CSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHH-----------------
T ss_pred hhccCCCCC-ceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHH-----------------
Confidence 00 0000 0000000000 0 00000 011111 11122233333322233333333
Q ss_pred ccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHH-hCCCCeEEecC-----CCccEEEEEecCCChHH
Q psy11047 569 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV-LGDPRFEIPAA-----RHLGMVVIRLLGENILT 642 (943)
Q Consensus 569 ~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L-~~~p~~eIl~~-----~~l~iV~Fr~~g~n~l~ 642 (943)
..++++++.+.| ++. ++++..+ ...+++.|++.+ .
T Consensus 286 ----------------------------------~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~----~ 326 (385)
T 2bkw_A 286 ----------------------------------HREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVAD----P 326 (385)
T ss_dssp ----------------------------------HHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSC----H
T ss_pred ----------------------------------HHHHHHHHHHHHHHhc-CceecccCcccccCCceEEEecCC----H
Confidence 346788888888 877 7888752 247889999864 5
Q ss_pred HHHHHHHhccCcEEEeeccc--CCCcEEEEe-ecC---CCCHHHHHHHHHHHHHHHH
Q psy11047 643 EKLLKRLNSKGRLHCVPASL--RIQGLGRAQ-NFT---RTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 643 ~~Ll~~L~~~G~~~~s~t~~--~g~~~lR~v-~~~---~tt~edId~ll~~I~~~~~ 693 (943)
.++.++|.++|. .+.+... .+..++|++ +.+ .++++|++++++.|+++.+
T Consensus 327 ~~~~~~l~~~gi-~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 327 PDVIAFLKSHGV-VIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 382 (385)
T ss_dssp HHHHHHHHHTTE-ECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCe-EEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHH
Confidence 678888887774 4443221 235789997 552 5799999999999987643
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-15 Score=165.43 Aligned_cols=308 Identities=11% Similarity=0.059 Sum_probs=189.6
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEE-EcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGV-LQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gv-fTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
+|....+...+.+++++++|.+.+ ...+ +|+|||+|+..++.+.. .+| +- |
T Consensus 47 ~~~~~~~~~~~~~~la~~~g~~~~---------~~~i~~~~ggt~al~~~~~~~~----------~~g--------d~-v 98 (376)
T 3f0h_A 47 TTEFSSTMLENEKFMLEYAKAPEG---------SKAVFMTCSSTGSMEAVVMNCF----------TKK--------DK-V 98 (376)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTT---------CEEEEESSCHHHHHHHHHHHHC----------CTT--------CC-E
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC---------ceEEEEcCChhHHHHHHHHhcc----------CCC--------Ce-E
Confidence 566667778899999999999753 1344 58999999988876532 122 22 4
Q ss_pred EecCCCchHHH--HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 305 YCSDQAHSSVE--KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 305 ~~S~~aHySv~--KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
+++...+++.. ..+...+..++.++++.++.+|+++|+++++.+ +.+|+.+...+.+|.+.|+++|++
T Consensus 99 i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~------~~~v~~~~~~nptG~~~~l~~i~~---- 168 (376)
T 3f0h_A 99 LVIDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQN------FTGLLVNVDETSTAVLYDTMMIGE---- 168 (376)
T ss_dssp EEEESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSC------CCEEEEESEETTTTEECCHHHHHH----
T ss_pred EEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccC------ceEEEEecccCCcceecCHHHHHH----
Confidence 44444455422 233344558899999888999999999876432 667888888889999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+|++||+ |+++|++++.+ .. .
T Consensus 169 ----------------l~~~~~~-------~li~D~~~~~~-~~-----------------------------------~ 189 (376)
T 3f0h_A 169 ----------------FCKKNNM-------FFVCDCVSAFL-AD-----------------------------------P 189 (376)
T ss_dssp ----------------HHHHTTC-------EEEEECTTTTT-TS-----------------------------------C
T ss_pred ----------------HHHHcCC-------EEEEEcCcccc-Cc-----------------------------------c
Confidence 9999999 99999998765 21 0
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccC-ccCcch------hhhhccc--Ccc-ccccCCCCcccccCccccCCCCCcch-H
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLR-VKNSGA------LHRTFNV--EPL-YLRHENSGLAIDYMHWQIPLSKRFRA-L 531 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~-vr~~~~------L~~af~~--~p~-YL~~~~~g~~~d~~~~tie~SRrfrA-L 531 (943)
. ..... .+|.+++++||+++ ...-.. +.+.+.. .+. |+..... .......+...+-...+ .
T Consensus 190 ~-~~~~~-----~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 261 (376)
T 3f0h_A 190 F-NMNEC-----GADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDA--LKNQERGQTPFTPAVGILL 261 (376)
T ss_dssp C-CHHHH-----TCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHH--HHHHTTTCCSSCCCHHHHH
T ss_pred c-ccccc-----CccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHH--HhhcccCCCCCCCcHHHHH
Confidence 0 11111 36999999999998 222111 1111110 000 1100000 00000000001101101 2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHH
Q psy11047 532 KLWFVIRNFGIK-GLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKF 610 (943)
Q Consensus 532 klW~tLr~~G~~-Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l 610 (943)
.+..++..+... ++.+..++ ..++++++
T Consensus 262 a~~~al~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~l 290 (376)
T 3f0h_A 262 QINERLKEIKKHGGADAEVAR---------------------------------------------------IASQAADF 290 (376)
T ss_dssp HHHHHHHHHHHTTHHHHHHHH---------------------------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHH---------------------------------------------------HHHHHHHH
Confidence 233334433333 34433333 34677888
Q ss_pred HHHHhCCCCeEEecCC-CccEEEEEecCCChHHHHHHHHHhcc-CcEEEeec-ccCCCcEEEEeecCCCCHHHHHHHHHH
Q psy11047 611 EALVLGDPRFEIPAAR-HLGMVVIRLLGENILTEKLLKRLNSK-GRLHCVPA-SLRIQGLGRAQNFTRTTNDDITRDWNE 687 (943)
Q Consensus 611 ~~~L~~~p~~eIl~~~-~l~iV~Fr~~g~n~l~~~Ll~~L~~~-G~~~~s~t-~~~g~~~lR~v~~~~tt~edId~ll~~ 687 (943)
.+.|++. ++++..+. ...++.|...+.+ ..++.++|.++ |. .+.+. ...+..++|++++..+|+++++++++.
T Consensus 291 ~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~gi-~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~ 366 (376)
T 3f0h_A 291 RAKIKDL-PFELVSESPANGVTSVHPTTAN--AYDIFLKLKDEYGI-WICPNGGEMKDTIFRVGHIGALTHEDNTTLVNA 366 (376)
T ss_dssp HHHTTTS-SEEECCSSBBTTEEEEEESSSC--HHHHHHHHHHHSSE-ECEECCGGGTTTCEEEECCSSCCHHHHHHHHHH
T ss_pred HHHHHHc-CCccCccccCceEEEEeCCCCC--HHHHHHHHHHhCCE-EEecCccccCCCEEEEecCCCCCHHHHHHHHHH
Confidence 8888876 57776544 3445566654433 57888888888 64 44432 123457899998888999999999999
Q ss_pred HHHHHH
Q psy11047 688 IRNTAT 693 (943)
Q Consensus 688 I~~~~~ 693 (943)
|+++.+
T Consensus 367 l~~~l~ 372 (376)
T 3f0h_A 367 FKDLQK 372 (376)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.3e-15 Score=163.44 Aligned_cols=300 Identities=12% Similarity=-0.010 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
....++.+++++++|.+ ..+++++||+||..++.+.. .+| -.|+++...
T Consensus 109 ~~~~~l~~~la~~~g~~------------~~i~~~sGs~a~~~al~~l~----------~~g---------d~vl~~~~~ 157 (427)
T 2w8t_A 109 HDHMEVEQALRDFYGTT------------GAIVFSTGYMANLGIISTLA----------GKG---------EYVILDADS 157 (427)
T ss_dssp HHHHHHHHHHHHHHTCS------------EEEEESCHHHHHHHHHHHHS----------CTT---------CEEEEETTC
T ss_pred HHHHHHHHHHHHHhCCC------------ceEEecCcHHHHHHHHHHhc----------CCC---------CEEEECCcc
Confidence 45556667888888875 25788889999988765421 122 357788999
Q ss_pred chHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccc
Q psy11047 311 HSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 311 HySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i 390 (943)
|.++..++.+.+.+++.++. +|+++|++.|+.... + .+.+|+.+...+.+|.+.|+++|.+
T Consensus 158 h~~~~~~~~~~g~~~~~~~~-----~d~~~le~~l~~~~~-~-~~~~v~~~~~~n~tG~~~~l~~l~~------------ 218 (427)
T 2w8t_A 158 HASIYDGCQQGNAEIVRFRH-----NSVEDLDKRLGRLPK-E-PAKLVVLEGVYSMLGDIAPLKEMVA------------ 218 (427)
T ss_dssp CHHHHHHHHHSCSEEEEECT-----TCHHHHHHHHHTSCS-S-SCEEEEEESEETTTTEECCHHHHHH------------
T ss_pred cHHHHHHHHHcCCeeEEeCC-----CCHHHHHHHHHhccC-C-CCeEEEEcCCCCCCCCccCHHHHHH------------
Confidence 99999988655556777763 689999999986321 1 3667777777788999999999999
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhh
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRI 470 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l 470 (943)
+|++||+ |+++|.+|+++ .+. . +|. .... .
T Consensus 219 --------l~~~~g~-------~li~Dea~~~~-~~~--~---------------------------~g~----~~~~-~ 248 (427)
T 2w8t_A 219 --------VAKKHGA-------MVLVDEAHSMG-FFG--P---------------------------NGR----GVYE-A 248 (427)
T ss_dssp --------HHHHTTC-------EEEEECTTTTT-TSS--T---------------------------TSC----CHHH-H
T ss_pred --------HHHHcCC-------EEEEECCcccc-ccC--C---------------------------CCC----chHh-h
Confidence 9999999 99999999876 320 0 000 0000 1
Q ss_pred cCC-CCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCc-chHHHHHHHHHHHHHHHHHH
Q psy11047 471 QGL-GRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF-RALKLWFVIRNFGIKGLQKH 548 (943)
Q Consensus 471 ~Gi-e~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf-rALklW~tLr~~G~~Gl~~~ 548 (943)
.++ +.+|.+..++||+++.+. +.+... ..-..++.... ..|...++-.. ....+..+++.+. .+.+.
T Consensus 249 ~~~~~~~di~~~s~sK~~g~~g-G~v~~~-~~l~~~l~~~~-------~~~~~~~~~~~~~~aa~~~al~~~~--~~~~~ 317 (427)
T 2w8t_A 249 QGLEGQIDFVVGTFSKSVGTVG-GFVVSN-HPKFEAVRLAC-------RPYIFTASLPPSVVATATTSIRKLM--TAHEK 317 (427)
T ss_dssp TTCTTCCSEEEEESSSTTCSCC-EEEEEC-CTTGGGGGGTC-------HHHHSSCCCCHHHHHHHHHHHHHHT--SCHHH
T ss_pred cCCCcCCcEEEecchhhhccCC-CEEEeC-HHHHHHHHHhc-------ccccccCCCCHHHHHHHHHHHHHHh--cCHHH
Confidence 122 357999999999998433 111000 00001111000 00111111111 1111111122110 00111
Q ss_pred HHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC-C
Q psy11047 549 IREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR-H 627 (943)
Q Consensus 549 I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~-~ 627 (943)
.++ ..++++++.+.|++. ++++..++ .
T Consensus 318 ~~~---------------------------------------------------~~~~~~~l~~~L~~~-g~~~~~~~~~ 345 (427)
T 2w8t_A 318 RER---------------------------------------------------LWSNARALHGGLKAM-GFRLGTETCD 345 (427)
T ss_dssp HHH---------------------------------------------------HHHHHHHHHHHHHHH-TCEESCSSCC
T ss_pred HHH---------------------------------------------------HHHHHHHHHHHHHHc-CCcccCCCCC
Confidence 111 245666777777666 78887555 7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc----CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL----RIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~----~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
.+++.|.+.+ ......+.++|.++|. ++.+... .+..++|++++..++++||+++++.|+++.+++
T Consensus 346 ~~~~~~~~~~-~~~~~~l~~~L~~~Gi-~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~ 415 (427)
T 2w8t_A 346 SAIVAVMLED-QEQAAMMWQALLDGGL-YVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415 (427)
T ss_dssp SSEEEEEESS-HHHHHHHHHHHHHTTE-ECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECC-HHHHHHHHHHHHHCCe-EEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 7899998853 2345788888888875 4443221 235689999999999999999999998876554
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-15 Score=163.74 Aligned_cols=301 Identities=9% Similarity=0.009 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
......+.+.+++++|.+.+ ..++|+|||+|+..++.+.+ + .+| -.|+++..
T Consensus 58 ~~~~~~l~~~la~~~g~~~~----------~v~~~~g~t~a~~~~~~~~~---~------~~g---------d~vl~~~~ 109 (390)
T 1elu_A 58 QQLIAQLRQALAETFNVDPN----------TITITDNVTTGCDIVLWGLD---W------HQG---------DEILLTDC 109 (390)
T ss_dssp HHHHHHHHHHHHHHTTSCGG----------GEEEESSHHHHHHHHHHHSC---C------CTT---------CEEEEETT
T ss_pred HHHHHHHHHHHHHHcCCCHH----------HEEEeCChHHHHHHHHhCCC---C------CCC---------CEEEEecC
Confidence 45566788899999998653 58999999999988876542 0 122 24677888
Q ss_pred CchHHHHH----HHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 310 AHSSVEKA----GLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 310 aHySv~KA----a~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+|.+...+ +...+.+++.++.+ +++.+|+++|+++|+.+ +.+|+.+...+.+|.+.|+++|.+
T Consensus 110 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~----- 178 (390)
T 1elu_A 110 EHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPK------TRLVILSHLLWNTGQVLPLAEIMA----- 178 (390)
T ss_dssp CCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTT------EEEEEEESBCTTTCCBCCHHHHHH-----
T ss_pred cccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCC------ceEEEEeccccCCceecCHHHHHH-----
Confidence 99986654 33323478888887 67899999999888643 678888889999999999999999
Q ss_pred ccccccccccCchHHHHH----HcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccC
Q psy11047 384 GLGFYKMKLQTNFPNFIL----SYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKG 459 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar----~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G 459 (943)
+|+ +||+ ++++|++|+.+ .. +
T Consensus 179 ---------------l~~~~~~~~~~-------~li~Dea~~~g-~~--~------------------------------ 203 (390)
T 1elu_A 179 ---------------VCRRHQGNYPV-------RVLVDGAQSAG-SL--P------------------------------ 203 (390)
T ss_dssp ---------------HHHHCCSSSCC-------EEEEECTTTBT-TB--C------------------------------
T ss_pred ---------------HHhhhhhhcCc-------EEEEEcccccC-Cc--C------------------------------
Confidence 999 9999 99999999744 21 0
Q ss_pred cccccchhhhhcCCCCeeEEEEcCCCccCccCc-ch------hhhhcccCccccccCCCCcccccCcc-------cc-CC
Q psy11047 460 RLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNS-GA------LHRTFNVEPLYLRHENSGLAIDYMHW-------QI-PL 524 (943)
Q Consensus 460 ~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~-~~------L~~af~~~p~YL~~~~~g~~~d~~~~-------ti-e~ 524 (943)
.. +.. ..+|.++.++|||++-..+ +. +.+.+ .+.+..........+...| .+ .+
T Consensus 204 ---~~-----~~~-~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (390)
T 1elu_A 204 ---LD-----FSR-LEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEI--NPTYVGWRSITYGAKGEPTGWAEGGKRFEVA 272 (390)
T ss_dssp ---CC-----TTT-SCCSEEEEESSSTTCCCTTCEEEEECTTTGGGC--CCCSCCTTTEEECTTSCEEEECSGGGGGCCS
T ss_pred ---CC-----hhh-cCCCEEEccccccccCCCceEEEEECHHhHhhc--CCccccCCcccccccCcccccccchHhhCCC
Confidence 00 111 2469999999997661111 11 11111 1100000000000000000 01 11
Q ss_pred CCCc-chHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHH
Q psy11047 525 SKRF-RALKLWFVIRNFGIKG-LQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQ 602 (943)
Q Consensus 525 SRrf-rALklW~tLr~~G~~G-l~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~ 602 (943)
+-.. ....++.++..+...+ +.+..++
T Consensus 273 ~~~~~~~~a~~~al~~l~~~~~~~~~~~~--------------------------------------------------- 301 (390)
T 1elu_A 273 TSAYPQYAGLLAALQLHQRQGTAEERYQA--------------------------------------------------- 301 (390)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCHHHHHHH---------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHH---------------------------------------------------
Confidence 1111 1122333344333333 3333333
Q ss_pred HHHHHHHHHHHHhCCCCeEEecC--CCccEEEEEec-CCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHH
Q psy11047 603 SVRLAQKFEALVLGDPRFEIPAA--RHLGMVVIRLL-GENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTND 679 (943)
Q Consensus 603 ~~~LA~~l~~~L~~~p~~eIl~~--~~l~iV~Fr~~-g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~e 679 (943)
..++++++.+.|++.|++++..+ ...++++|++. +.+ ..++.++|.++|. ++.+.. +..++|++++..++++
T Consensus 302 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi-~v~~~~--~~~~iRis~~~~~~~~ 376 (390)
T 1elu_A 302 ICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLG--HRAIVQKLEEQRI-YLRTIA--DPDCIRACCHYITDEE 376 (390)
T ss_dssp HHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSC--HHHHHHHHHHTTE-ECEEET--TTTEEEEECCTTCCHH
T ss_pred HHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCCC--HHHHHHHHHHCCE-EEEecC--CCCeEEEecccCCCHH
Confidence 24567788888888889998863 47889999885 322 4678888887775 444432 4578999988999999
Q ss_pred HHHHHHHHHHHH
Q psy11047 680 DITRDWNEIRNT 691 (943)
Q Consensus 680 dId~ll~~I~~~ 691 (943)
+++++++.|+++
T Consensus 377 ~i~~~~~~l~~~ 388 (390)
T 1elu_A 377 EINHLLARLADF 388 (390)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=162.97 Aligned_cols=306 Identities=12% Similarity=0.070 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
....++.+++++++|.+... ...++|+|||+|+..++.+.+ .+| +-+++++...
T Consensus 37 ~~~~~l~~~la~~~g~~~~~--------~~v~~~~g~t~a~~~~~~~~~----------~~g--------d~vi~~~~~~ 90 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGY--------TSVLLQGSGSYAVEAVLGSAL----------GPQ--------DKVLIVSNGA 90 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSE--------EEEEEESCHHHHHHHHHHHSC----------CTT--------CCEEEEESSH
T ss_pred HHHHHHHHHHHHHhCCCCcC--------cEEEEecChHHHHHHHHHHhc----------CCC--------CeEEEEeCCC
Confidence 44456778889999943210 258999999999988877642 122 3356677788
Q ss_pred chH-HHHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccc
Q psy11047 311 HSS-VEKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388 (943)
Q Consensus 311 HyS-v~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~ 388 (943)
|.+ +..++. .|. +++.++++.++.+|+++|+++|+++. .+.+|+.+...+.+|.+.|+++|.+
T Consensus 91 ~~~~~~~~~~~~g~-~~~~v~~~~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~nptG~~~~l~~i~~---------- 155 (366)
T 1m32_A 91 YGARMVEMAGLMGI-AHHAYDCGEVARPDVQAIDAILNADP----TISHIAMVHSETTTGMLNPIDEVGA---------- 155 (366)
T ss_dssp HHHHHHHHHHHHTC-CEEEEECCTTSCCCHHHHHHHHHHCT----TCCEEEEESEETTTTEECCHHHHHH----------
T ss_pred ccHHHHHHHHHhCC-ceEEEeCCCCCCCCHHHHHHHHhcCC----CeEEEEEecccCCcceecCHHHHHH----------
Confidence 877 445554 454 78889998889999999999998641 1556777888888999999999999
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhh
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL 468 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~ 468 (943)
+|++||+ |+++|++++.. .. + .+
T Consensus 156 ----------l~~~~~~-------~li~Dea~~~~-~~--~---------------------------------~~---- 178 (366)
T 1m32_A 156 ----------LAHRYGK-------TYIVDAMSSFG-GI--P---------------------------------MD---- 178 (366)
T ss_dssp ----------HHHHHTC-------EEEEECTTTTT-TS--C---------------------------------CC----
T ss_pred ----------HHHHcCC-------EEEEECCcccc-Cc--C---------------------------------cc----
Confidence 9999999 99999999754 21 0 00
Q ss_pred hhcCCCCeeEEEEcCCCccCccCc-chhh--hhcccCccccccCCCCcccccC-cc----ccCCCCCc--chH---HHHH
Q psy11047 469 RIQGLGRAQNFTIVPSSLLRVKNS-GALH--RTFNVEPLYLRHENSGLAIDYM-HW----QIPLSKRF--RAL---KLWF 535 (943)
Q Consensus 469 ~l~Gie~ADSItiDpHK~L~vr~~-~~L~--~af~~~p~YL~~~~~g~~~d~~-~~----tie~SRrf--rAL---klW~ 535 (943)
+.. ..+|.++.++|||++...+ +.+. ..+. ..+.....+...+.. .+ +-.+.+++ ..+ .+..
T Consensus 179 -~~~-~~~di~~~s~~K~~~~~~g~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 253 (366)
T 1m32_A 179 -IAA-LHIDYLISSANKCIQGVPGFAFVIAREQKL---AACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQ 253 (366)
T ss_dssp -TTT-TTCSEEEEESSSTTCCCSSEEEEEEEHHHH---TTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHH
T ss_pred -ccc-cCccEEEecCcccccCCCceEEEEECHHHH---HhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHH
Confidence 111 1469999999998752111 1110 0000 001100000000000 00 00012221 111 2333
Q ss_pred HHHHHHHHH-HHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHH
Q psy11047 536 VIRNFGIKG-LQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 614 (943)
Q Consensus 536 tLr~~G~~G-l~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L 614 (943)
+++.+...| +.+..++ ..++++++.+.|
T Consensus 254 al~~~~~~g~~~~~~~~---------------------------------------------------~~~~~~~l~~~L 282 (366)
T 1m32_A 254 ALKELAKEGGVAARHQR---------------------------------------------------YQQNQRSLVAGM 282 (366)
T ss_dssp HHHHHHHHTHHHHHHHH---------------------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHccCHhHHHHH---------------------------------------------------HHHHHHHHHHHH
Confidence 344433333 4443333 245677777777
Q ss_pred hCCCCeEEecC--CCcc-EEEEEecCC-ChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHH
Q psy11047 615 LGDPRFEIPAA--RHLG-MVVIRLLGE-NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRN 690 (943)
Q Consensus 615 ~~~p~~eIl~~--~~l~-iV~Fr~~g~-n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~ 690 (943)
++. ++++..+ +..+ ++.|++++. +....++.+.|.++|. ++.+....+..++|++++..++++||+++++.|++
T Consensus 283 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 360 (366)
T 1m32_A 283 RAL-GFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGF-VIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRT 360 (366)
T ss_dssp HHT-TCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTE-ECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred HHC-CCeeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCE-EEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 776 7777654 2345 888888631 1125678888888874 55543333567999999889999999999999987
Q ss_pred HH
Q psy11047 691 TA 692 (943)
Q Consensus 691 ~~ 692 (943)
+.
T Consensus 361 ~~ 362 (366)
T 1m32_A 361 AM 362 (366)
T ss_dssp HC
T ss_pred HH
Confidence 64
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-15 Score=163.87 Aligned_cols=299 Identities=11% Similarity=0.025 Sum_probs=186.4
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+.+.+++++|.+ ..++|+|||+|+..++.+.+.+ ..+| -.|+++..+|++.
T Consensus 36 ~l~~~la~~~~~~------------~v~~~~ggt~al~~~~~~~~~~-------~~~g---------d~Vl~~~~~~~~~ 87 (375)
T 2fnu_A 36 LFEEALCEFLGVK------------HALVFNSATSALLTLYRNFSEF-------SADR---------NEIITTPISFVAT 87 (375)
T ss_dssp HHHHHHHHHHTCS------------EEEEESCHHHHHHHHHHHSSCC-------CTTS---------CEEEECSSSCTHH
T ss_pred HHHHHHHHHhCCC------------eEEEeCCHHHHHHHHHHHhccc-------CCCC---------CEEEECCCccHhH
Confidence 4556778888875 3799999999998888764210 0122 3578899999999
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++...+.+++.++++.++.+|+++|+++|+++ +.+|+.+.. +|.+.|+++|.+
T Consensus 88 ~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~---tG~~~~l~~i~~---------------- 142 (375)
T 2fnu_A 88 ANMLLESGYTPVFAGIKNDGNIDELALEKLINER------TKAIVSVDY---AGKSVEVESVQK---------------- 142 (375)
T ss_dssp HHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTT------EEEEEEECG---GGCCCCHHHHHH----------------
T ss_pred HHHHHHCCCEEEEeccCCCCCCCHHHHHhhcCcC------ceEEEEeCC---cCCccCHHHHHH----------------
Confidence 9988654458889999888899999999888643 455555544 899999999999
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLG 474 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie 474 (943)
+|++||+ |+++|++++.+ .+ + .. ..+....
T Consensus 143 ----l~~~~~~-------~li~D~a~~~~-~~--~---------------------------------~~---~~~~~~~ 172 (375)
T 2fnu_A 143 ----LCKKHSL-------SFLSDSSHALG-SE--Y---------------------------------QN---KKVGGFA 172 (375)
T ss_dssp ----HHHHHTC-------EEEEECTTCTT-CE--E---------------------------------TT---EETTSSS
T ss_pred ----HHHHcCC-------EEEEECccccC-Ce--E---------------------------------CC---eeccccC
Confidence 9999999 99999999765 21 0 00 0011122
Q ss_pred CeeEEEEcCCCccCc--------cCcchhhhhcccCccccccCCCCcccccCccc-cCCCCCcchHHHHHHHHHHHHHHH
Q psy11047 475 RAQNFTIVPSSLLRV--------KNSGALHRTFNVEPLYLRHENSGLAIDYMHWQ-IPLSKRFRALKLWFVIRNFGIKGL 545 (943)
Q Consensus 475 ~ADSItiDpHK~L~v--------r~~~~L~~af~~~p~YL~~~~~g~~~d~~~~t-ie~SRrfrALklW~tLr~~G~~Gl 545 (943)
.++..++++||+++. +++. +.+.+. .+..+... ......+. ...+.++....+...+.....+++
T Consensus 173 ~i~~~s~s~~K~~~~g~g~~~~~~~~~-~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 246 (375)
T 2fnu_A 173 LASVFSFHAIKPITTAEGGAVVTNDSE-LHEKMK---LFRSHGML--KKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA 246 (375)
T ss_dssp SEEEEECCTTSSSCCSSCEEEEESCHH-HHHHHH---HHTBTTEE--ESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH
T ss_pred CeEEEeCCCCCCccccCceEEEeCCHH-HHHHHH---HHHhcCCc--cccccccccccccccCCCCHHHHHHHHHHHHHH
Confidence 578899999999973 1121 111110 01110000 00000000 011111122222222222233444
Q ss_pred HHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC
Q psy11047 546 QKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA 625 (943)
Q Consensus 546 ~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~ 625 (943)
.+.+++ ..++++++.+.|++.|++++..+
T Consensus 247 ~~~~~~---------------------------------------------------~~~~~~~l~~~L~~~~~~~~~~~ 275 (375)
T 2fnu_A 247 PFLMQK---------------------------------------------------REEAALTYDRIFKDNPYFTPLHP 275 (375)
T ss_dssp HHHHHH---------------------------------------------------HHHHHHHHHHHHTTCSSEEESGG
T ss_pred HHHHHH---------------------------------------------------HHHHHHHHHHHhhcCCCccccCC
Confidence 444444 35678889999999999998764
Q ss_pred C-----CccEEEEEecCCCh-HHHHHHHHHhccCcEEEe----ecc----cC--------------CCcEEEEeecCCCC
Q psy11047 626 R-----HLGMVVIRLLGENI-LTEKLLKRLNSKGRLHCV----PAS----LR--------------IQGLGRAQNFTRTT 677 (943)
Q Consensus 626 ~-----~l~iV~Fr~~g~n~-l~~~Ll~~L~~~G~~~~s----~t~----~~--------------g~~~lR~v~~~~tt 677 (943)
+ ...++.+++++... ....+.++|.++|.. +. +.. .. ...++|+++++.+|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~-v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t 354 (375)
T 2fnu_A 276 LLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGIL-AQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLN 354 (375)
T ss_dssp GCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEE-CBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCC
T ss_pred CCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCC-ccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCC
Confidence 2 22344566653211 356788888888753 33 111 00 12689999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11047 678 NDDITRDWNEIRNTATE 694 (943)
Q Consensus 678 ~edId~ll~~I~~~~~~ 694 (943)
++||+++++.|+++.++
T Consensus 355 ~~~i~~~~~~l~~~~~~ 371 (375)
T 2fnu_A 355 LESVQNIAHSVLKTFES 371 (375)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987654
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-15 Score=165.85 Aligned_cols=312 Identities=10% Similarity=-0.062 Sum_probs=191.5
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
+|.......++.+++++++|.+.+ ...++|+|||+|+..++.+.. .+| -.|+
T Consensus 46 ~~~~~~~~~~l~~~la~~~~~~~~---------~~v~~~~g~t~al~~~~~~~~----------~~g---------d~vl 97 (396)
T 2ch1_A 46 HAELFRTMDEVKDGLRYIFQTENR---------ATMCVSGSAHAGMEAMLSNLL----------EEG---------DRVL 97 (396)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCS---------CEEEESSCHHHHHHHHHHHHC----------CTT---------CEEE
T ss_pred ChhHHHHHHHHHHHHHHHhCCCCC---------cEEEECCcHHHHHHHHHHHhc----------CCC---------CeEE
Confidence 566566677899999999998642 147899999999988876531 122 2366
Q ss_pred ecCCCchHHH--HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 306 CSDQAHSSVE--KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 306 ~S~~aHySv~--KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+++.+|++.. +++...+..++.++++.++.+|+++|+++|++. .+.+|+.+...+.+|.+.|+++|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~i~~----- 167 (396)
T 2ch1_A 98 IAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQPLEGVGQ----- 167 (396)
T ss_dssp EEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHH-----
T ss_pred EEcCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhC-----CCCEEEEECCCCCCceecCHHHHHH-----
Confidence 7778898864 344444458899999888999999999999863 1557777888899999999999999
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccc
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHC 463 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~ 463 (943)
+|++||+ |+++|++|+.. .. + .
T Consensus 168 ---------------l~~~~~~-------~li~Dea~~~g-~~--~---------------------------------~ 189 (396)
T 2ch1_A 168 ---------------ICHQHDC-------LLIVDAVASLC-GV--P---------------------------------F 189 (396)
T ss_dssp ---------------HHHHTTC-------EEEEECTTTBT-TB--C---------------------------------C
T ss_pred ---------------HHHHcCC-------EEEEEcccccc-CC--c---------------------------------c
Confidence 9999999 99999998743 21 0 0
Q ss_pred cchhhhhcCCCCeeEEEEcCCCccCc-cCcc------hhhhhcccC----ccccccCCCCcccccC----ccccCCCCCc
Q psy11047 464 VPASLRIQGLGRAQNFTIVPSSLLRV-KNSG------ALHRTFNVE----PLYLRHENSGLAIDYM----HWQIPLSKRF 528 (943)
Q Consensus 464 p~~r~~l~Gie~ADSItiDpHK~L~v-r~~~------~L~~af~~~----p~YL~~~~~g~~~d~~----~~tie~SRrf 528 (943)
+ +... .+|.++.++||+++. ..-. .+...+... ..|+... .+...-+. .....++-..
T Consensus 190 ~-----~~~~-~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 262 (396)
T 2ch1_A 190 Y-----MDKW-EIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDL-LLLGNYWGCYDEPKRYHHTVAS 262 (396)
T ss_dssp C-----TTTT-TCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCH-HHHHHHTTCSSSCCCCCCCCCH
T ss_pred c-----hhhc-CcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEech-HHHHHhhhhhcccCCCCCCCcH
Confidence 0 1111 369999999998761 1111 111111100 0111100 00000000 0000111111
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHH
Q psy11047 529 -RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 607 (943)
Q Consensus 529 -rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA 607 (943)
....+..+++.+...++.+.+++ ..+++
T Consensus 263 ~~~~a~~~al~~~~~~~~~~~~~~---------------------------------------------------~~~~~ 291 (396)
T 2ch1_A 263 NLIFALREALAQIAEEGLENQIKR---------------------------------------------------RIECA 291 (396)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHH---------------------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH---------------------------------------------------HHHHH
Confidence 11222333443333344444433 23456
Q ss_pred HHHHHHHhCCCCeEEecCCC----ccEEEEEec-CCChHHHHHHHHHhcc-CcEEEeec-ccCCCcEEEEee-cCCCCHH
Q psy11047 608 QKFEALVLGDPRFEIPAARH----LGMVVIRLL-GENILTEKLLKRLNSK-GRLHCVPA-SLRIQGLGRAQN-FTRTTND 679 (943)
Q Consensus 608 ~~l~~~L~~~p~~eIl~~~~----l~iV~Fr~~-g~n~l~~~Ll~~L~~~-G~~~~s~t-~~~g~~~lR~v~-~~~tt~e 679 (943)
+++.+.|.+. ++++..+.. .+++.|+++ +.+ ..++.++|.++ |.. +.+. ......++|+++ ++.++++
T Consensus 292 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~~~gi~-v~~g~~~~~~~~iRi~~~~~~~~~e 367 (396)
T 2ch1_A 292 QILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPKGVD--WWKVSQYAMNNFSLE-VQGGLGPTFGKAWRVGIMGECSTVQ 367 (396)
T ss_dssp HHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTTCC--HHHHHHHHHHHHCBC-CBCCCGGGTTTEEEEECCGGGCSHH
T ss_pred HHHHHHHHHC-CCeeccCCccccCCceEEEEcCCCCC--HHHHHHHHHHhCCEE-EecCccccCCCEEEEECCCCcCCHH
Confidence 6677777666 677765432 247888885 333 46788888765 753 3322 122457899977 6678999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11047 680 DITRDWNEIRNTATEI 695 (943)
Q Consensus 680 dId~ll~~I~~~~~~l 695 (943)
|++++++.|+++.+++
T Consensus 368 ~i~~~~~~l~~~l~~~ 383 (396)
T 2ch1_A 368 KIQFYLYGFKESLKAT 383 (396)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998876543
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=177.37 Aligned_cols=326 Identities=13% Similarity=0.023 Sum_probs=204.4
Q ss_pred CChHHHHHHHHHHHHh--ccCc-c---ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE-cCChHHHHHHH
Q psy11047 202 NSYPSLLGDMLSDAIN--CLGF-T---WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL-QTTASESTLIC 274 (943)
Q Consensus 202 ~s~~silgd~L~~alN--~n~~-~---~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf-TsGGTeANL~A 274 (943)
+-++.++..|.....| .|+. . ...++.+.++-.++++.+++++|.+++ ...+| |+|||+|+..+
T Consensus 23 ~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~---------~evif~t~~~T~a~n~a 93 (377)
T 3e77_A 23 MLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDN---------YKVIFLQGGGCGQFSAV 93 (377)
T ss_dssp CCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTT---------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC---------CeEEEEcCchHHHHHHH
Confidence 3466776666554432 2222 2 234677778888899999999999753 25788 68999998777
Q ss_pred HHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH----HCCccEEEEecCCCCCcCHHHHHHHHHHhhc
Q psy11047 275 LLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL----IGLVNMRYIESDDKLSLRGDKLIEAIERDKK 350 (943)
Q Consensus 275 L~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~----LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~ 350 (943)
+... +. ..+| + .+.+...+|++- +++. .| ..+..++++..+..++++++..++++
T Consensus 94 ~~~l----~~----~~~G--------d-~v~~~~~g~~~~-~~~~~a~~~G-~~~~~~~~~~~~~~~~~~~~~~i~~~-- 152 (377)
T 3e77_A 94 PLNL----IG----LKAG--------R-CADYVVTGAWSA-KAAEEAKKFG-TINIVHPKLGSYTKIPDPSTWNLNPD-- 152 (377)
T ss_dssp HHHH----GG----GSTT--------C-EEEECCCSHHHH-HHHHHHTTTS-EEEECSCCCSSSCSCCCGGGCCCCTT--
T ss_pred HHhc----cC----CCCC--------C-eEEEEECCHHHH-HHHHHHHHhC-CceEEeccCCCcCCCCChHHhccCCC--
Confidence 6642 11 0111 1 244456677763 3332 34 35666788767777777765555433
Q ss_pred cCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcccccc
Q psy11047 351 KHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPA 430 (943)
Q Consensus 351 kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~ 430 (943)
+.+|+.+...|.+|.+.|+ |++ ++|+ ++||||+++.. .. |.
T Consensus 153 ----t~lV~~~h~et~tG~~~pi--i~~-----------------------~~~~-------~~~vD~~q~~g-~~--~i 193 (377)
T 3e77_A 153 ----ASYVYYCANETVHGVEFDF--IPD-----------------------VKGA-------VLVCDMSSNFL-SK--PV 193 (377)
T ss_dssp ----CSCEEEESEETTTTEECSS--CCC-----------------------CTTC-------CEEEECTTTTT-SS--CC
T ss_pred ----ccEEEEeCccCchheEchh--hhc-----------------------cCCC-------EEEEEcccccC-CC--CC
Confidence 5678899999999999998 544 6899 99999998766 32 11
Q ss_pred ccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchh-------hhhcccCc
Q psy11047 431 ARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL-------HRTFNVEP 503 (943)
Q Consensus 431 ~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L-------~~af~~~p 503 (943)
.. +..|-+++++|||++.+.-..+ ...-...|
T Consensus 194 -------------------------------d~----------~~~~~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p 232 (377)
T 3e77_A 194 -------------------------------DV----------SKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECP 232 (377)
T ss_dssp -------------------------------CG----------GGCSEEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSC
T ss_pred -------------------------------ch----------hhcCEEEEecccccCCCccEEEEEcHHHHhhccCCCC
Confidence 01 1123488999999993222211 00000111
Q ss_pred cccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc-chhhhhcccccc
Q psy11047 504 LYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCL-GTAMIVKGLGFY 582 (943)
Q Consensus 504 ~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~-g~~~i~~~~~~~ 582 (943)
.|+ ++..+.-..++ |.|....|+.|+.+.++.+.+ . |++.|.++
T Consensus 233 ~~~---------~~~~~~~~~~~-------~~Tp~v~~i~~l~~al~~l~~---------------~GG~~~i~~~---- 277 (377)
T 3e77_A 233 SVL---------EYKVQAGNSSL-------YNTPPCFSIYVMGLVLEWIKN---------------NGGAAAMEKL---- 277 (377)
T ss_dssp GGG---------CHHHHHTTTTC-------SSCCCHHHHHHHHHHHHHHHH---------------TTHHHHHHHH----
T ss_pred chh---------hHHHHhhcCCC-------CCCchHHHHHHHHHHHHHHHH---------------ccCHHHHHHH----
Confidence 121 11100001111 124455666777777777543 2 45555443
Q ss_pred cccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEec-C--CCcc-EEEEEecCCC---hHHHHHHHHHhccCcE
Q psy11047 583 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPA-A--RHLG-MVVIRLLGEN---ILTEKLLKRLNSKGRL 655 (943)
Q Consensus 583 ~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~-~--~~l~-iV~Fr~~g~n---~l~~~Ll~~L~~~G~~ 655 (943)
..++++++.+.|.++|++++.. + ...+ +++|++++.+ .+...+++.+.++|.+
T Consensus 278 --------------------~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~ 337 (377)
T 3e77_A 278 --------------------SSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKALELNML 337 (377)
T ss_dssp --------------------HHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEE
T ss_pred --------------------HHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcE
Confidence 5789999999999999998643 2 2344 6999998742 3445777888777753
Q ss_pred EEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 656 HCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 656 ~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+.+ ..+..+.+|++++.++|.+||+++++.|+++.++
T Consensus 338 -~~~-g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 338 -SLK-GHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp -SCB-CCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -EeC-CCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 322 2233456999999999999999999999988654
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-14 Score=155.90 Aligned_cols=318 Identities=11% Similarity=0.023 Sum_probs=191.6
Q ss_pred HHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhccc
Q psy11047 210 DMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQS 289 (943)
Q Consensus 210 d~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~ 289 (943)
+.+...++.....+..++...++|. .+++++|.+. .+++++||+|+..++.+.+ +
T Consensus 21 ~a~~~~l~~~~~~~~~~~~~~~l~~----~la~~~~~~~------------~i~~~sGt~al~~~l~~l~---~------ 75 (388)
T 1b9h_A 21 NGLVRALEQGQWWRMGGDEVNSFER----EFAAHHGAAH------------ALAVTNGTHALELALQVMG---V------ 75 (388)
T ss_dssp HHHHHHHHTSCCBTTTCSHHHHHHH----HHHHHTTCSE------------EEEESCHHHHHHHHHHHTT---C------
T ss_pred HHHHHHHHcCCeeecCCHHHHHHHH----HHHHHhCCCe------------EEEeCCHHHHHHHHHHHcC---C------
Confidence 3444444433233445566666665 5577777652 3556667999988877531 0
Q ss_pred CCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccc
Q psy11047 290 HPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFL 368 (943)
Q Consensus 290 ~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tG 368 (943)
.+| -.|+++..+|.++..++..-+..++.++++. ++.+|+++|+++|+.+ +.+|+ .++.+|
T Consensus 76 ~~g---------d~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~---~~n~tG 137 (388)
T 1b9h_A 76 GPG---------TEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPR------TKVIM---PVHMAG 137 (388)
T ss_dssp CTT---------CEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTT------EEEEC---CBCGGG
T ss_pred CCc---------CEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcC------ceEEE---EeCCcc
Confidence 122 2477889999999988854444788899876 4899999999998643 44555 567789
Q ss_pred ccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhH
Q psy11047 369 VVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILT 448 (943)
Q Consensus 369 aIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n 448 (943)
.+.|+++|.+ +|++||+ |+|+|++++.+..+ .
T Consensus 138 ~~~~l~~i~~--------------------la~~~~~-------~li~D~a~~~g~~~---~------------------ 169 (388)
T 1b9h_A 138 LMADMDALAK--------------------ISADTGV-------PLLQDAAHAHGARW---Q------------------ 169 (388)
T ss_dssp CCCCHHHHHH--------------------HHHHHTC-------CBCEECTTCTTCEE---T------------------
T ss_pred CcCCHHHHHH--------------------HHHHcCC-------EEEEecchhcCCcc---C------------------
Confidence 9999999999 9999999 99999999754111 0
Q ss_pred HHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC--------ccCcch--hhhhcccCccccccCCCCcccccC
Q psy11047 449 EKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR--------VKNSGA--LHRTFNVEPLYLRHENSGLAIDYM 518 (943)
Q Consensus 449 ~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~--------vr~~~~--L~~af~~~p~YL~~~~~g~~~d~~ 518 (943)
| .. +..+..++..+++.||++. .++... +.. +.. +...........+.
T Consensus 170 ----------~----~~----~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~ 227 (388)
T 1b9h_A 170 ----------G----KR----VGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYET-AFL---RHSCGRPRDDRRYF 227 (388)
T ss_dssp ----------T----EE----GGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHH-HHH---HTBTTCCTTCSSCC
T ss_pred ----------C----ee----cccccceEEEEccCCCcccCCCeEEEEECCHHHHHHHH-HHH---HHhCCCCccCccce
Confidence 0 00 1111257999999999985 122211 111 100 00000000000000
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccC
Q psy11047 519 HWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYF 598 (943)
Q Consensus 519 ~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~ 598 (943)
......+-+...+.+++.+. +.+.+.+.+++
T Consensus 228 ~~~~g~~~~~~~~~~a~~~~--~~~~l~~~~~~----------------------------------------------- 258 (388)
T 1b9h_A 228 HKIAGSNMRLNEFSASVLRA--QLARLDEQIAV----------------------------------------------- 258 (388)
T ss_dssp CCSCCCBCBCBHHHHHHHHH--HHTTHHHHHHH-----------------------------------------------
T ss_pred eecccccCCcCHHHHHHHHH--HHHHHHHHHHH-----------------------------------------------
Confidence 01111111233343333221 11222222222
Q ss_pred CcHHHHHHHHHHHHHHhCCCCeEEecC------CCccEEEEEecCCC-hHHHHHHHHHhccCcEEEe---ecccC-----
Q psy11047 599 PKFQSVRLAQKFEALVLGDPRFEIPAA------RHLGMVVIRLLGEN-ILTEKLLKRLNSKGRLHCV---PASLR----- 663 (943)
Q Consensus 599 p~~~~~~LA~~l~~~L~~~p~~eIl~~------~~l~iV~Fr~~g~n-~l~~~Ll~~L~~~G~~~~s---~t~~~----- 663 (943)
..++++++.+.|.+.|++++..+ ...+++.|++++.. ....++.+.|.++|...-. +....
T Consensus 259 ----~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~ 334 (388)
T 1b9h_A 259 ----RDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWE 334 (388)
T ss_dssp ----HHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHH
T ss_pred ----HHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHh
Confidence 24567888889988899988753 23578899987542 1256788888888864322 11000
Q ss_pred ---------------------CCcEEEEeecCCC-CHHHHHHHHHHHHHHHH
Q psy11047 664 ---------------------IQGLGRAQNFTRT-TNDDITRDWNEIRNTAT 693 (943)
Q Consensus 664 ---------------------g~~~lR~v~~~~t-t~edId~ll~~I~~~~~ 693 (943)
....+|+.+++.+ |++||+++++.|+++.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~ 386 (388)
T 1b9h_A 335 LGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVA 386 (388)
T ss_dssp SSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred cCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHh
Confidence 0237999999999 99999999999988754
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=163.52 Aligned_cols=296 Identities=12% Similarity=0.055 Sum_probs=190.9
Q ss_pred HHHHHHHHHH-HHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 230 TELEIITMNW-LGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 230 teLE~~Vi~w-La~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
.....++.++ +++++|.+ ..+||+|||+|+..++.+.. .+| -.|++++
T Consensus 52 ~~~~~~l~~~~la~~~~~~------------~v~~~~g~t~a~~~~~~~~~----------~~g---------d~vl~~~ 100 (371)
T 2e7j_A 52 TPPIHDFIHNQLPKFLGCD------------VARVTNGAREAKFAVMHSLA----------KKD---------AWVVMDE 100 (371)
T ss_dssp -CCHHHHHHTHHHHHTTSS------------EEEEESSHHHHHHHHHHHHC----------CTT---------CEEEEET
T ss_pred HHHHHHHHHHHHHHHcCCC------------EEEEeCChHHHHHHHHHHHh----------CCC---------CEEEEcc
Confidence 3445567778 89999875 37899999999988887642 122 3578889
Q ss_pred CCchHHHHHHHHCCccEEEEe--cCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIE--SDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLG 386 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp--~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~ 386 (943)
.+|++...++...+.+++.++ .++++.+|+++|+++|+....+ ..+.+|+.+...+.+|.+.|+++|.+
T Consensus 101 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~~~~i~~-------- 171 (371)
T 2e7j_A 101 NCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPDVKKIAK-------- 171 (371)
T ss_dssp TCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCCHHHHHH--------
T ss_pred CcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCCHHHHHH--------
Confidence 999999998865445888999 8888999999999999854321 23678889999999999999999999
Q ss_pred cccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccch
Q psy11047 387 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA 466 (943)
Q Consensus 387 ~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~ 466 (943)
+|++||+ |+++|++|+.+ .+ + . ..
T Consensus 172 ------------~~~~~~~-------~li~D~a~~~~-~~--~---------------------------------~-~~ 195 (371)
T 2e7j_A 172 ------------VCSEYDV-------PLLVNGAYAIG-RM--P---------------------------------V-SL 195 (371)
T ss_dssp ------------HHHTTTC-------CEEEECTTTBT-TB--C---------------------------------C-CH
T ss_pred ------------HHHHcCC-------eEEEECccccC-CC--C---------------------------------C-Ch
Confidence 9999999 99999999876 22 0 0 01
Q ss_pred hhhhcCCCCeeEEEEcCCCccCccCc-chhhhhcccCccc----cccCCCCcccccCcccc-CCCCCcch-HHHHHHHHH
Q psy11047 467 SLRIQGLGRAQNFTIVPSSLLRVKNS-GALHRTFNVEPLY----LRHENSGLAIDYMHWQI-PLSKRFRA-LKLWFVIRN 539 (943)
Q Consensus 467 r~~l~Gie~ADSItiDpHK~L~vr~~-~~L~~af~~~p~Y----L~~~~~g~~~d~~~~ti-e~SRrfrA-LklW~tLr~ 539 (943)
.. + .+|.++.++||+++...+ +.+. ..... +.....+.. ..+.+ .++-...+ ..+..+++.
T Consensus 196 ~~-~----~~di~~~s~sK~~~~~~~~G~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~ 263 (371)
T 2e7j_A 196 KE-I----GADFIVGSGHKSMAASGPIGVMG----MKEEWAEIVLRRSEKYKN---KEVELLGCTARGATIITLMASFPH 263 (371)
T ss_dssp HH-H----TCSEEEEEHHHHSSCCSSCEEEE----ECTTTTTTTTCBCSSCTT---SBGGGTTCCCCSHHHHHHHHHHHH
T ss_pred hh-c----CCCEEEecCCcCCCCCCCcEEEE----EechhhhhhccccccCcc---cccccccCCcCHHHHHHHHHHHHH
Confidence 11 1 368999999998873211 1110 00111 110000000 00000 11111111 111112221
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHH--HHHHHHHHHHHhCC
Q psy11047 540 FGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQS--VRLAQKFEALVLGD 617 (943)
Q Consensus 540 ~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~--~~LA~~l~~~L~~~ 617 (943)
+.. +..++ . .++++++.+.|++.
T Consensus 264 ~~~----~~~~~---------------------------------------------------~~~~~~~~~l~~~L~~~ 288 (371)
T 2e7j_A 264 VRE----RIKRW---------------------------------------------------DEEVEKARRFAAEMEKL 288 (371)
T ss_dssp HHH----HGGGH---------------------------------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHH----HHHHH---------------------------------------------------HHHHHHHHHHHHHHHHc
Confidence 111 00000 2 35677888888777
Q ss_pred CCeEEecCC--CccEEEEEecCCChHHHHHHHHHhccCcEEEeecc--c--CC--CcEEE-EeecCC-CCHHHHHHHHHH
Q psy11047 618 PRFEIPAAR--HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS--L--RI--QGLGR-AQNFTR-TTNDDITRDWNE 687 (943)
Q Consensus 618 p~~eIl~~~--~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~--~--~g--~~~lR-~v~~~~-tt~edId~ll~~ 687 (943)
++++..++ ..+++.|++. -..++.+.|.++|. ++.+.. . .+ ..++| ++++.. +++++++++++.
T Consensus 289 -~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi-~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~ 362 (371)
T 2e7j_A 289 -GIKQLGDNPHNHDLMFFHAE----VLYEISKKAKGGRF-FLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNA 362 (371)
T ss_dssp -TCEEESSSSCCSSEEEEECH----HHHHHHHHSSSGGG-HHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHH
T ss_pred -CcEEecCCCccCceEEEECC----CHHHHHHHHHHCCE-EEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHH
Confidence 88888654 5788999885 24677888877775 333311 1 02 57899 888877 899999999999
Q ss_pred HHHHHHH
Q psy11047 688 IRNTATE 694 (943)
Q Consensus 688 I~~~~~~ 694 (943)
|+++.++
T Consensus 363 l~~~~~~ 369 (371)
T 2e7j_A 363 FKEIIEK 369 (371)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887653
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-16 Score=179.84 Aligned_cols=306 Identities=9% Similarity=-0.033 Sum_probs=181.9
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE-cCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc-eE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL-QTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR-LV 303 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf-TsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~-~v 303 (943)
++.+.++-.++++.+++++|.+++ ...+| |+|||+|+..++... + .+| .+ .+
T Consensus 67 ~~~~~~~~~~ar~~la~ll~~~~~---------~evif~t~~~T~a~n~ai~~l----~------~~g-------d~v~~ 120 (386)
T 3qm2_A 67 GKEFIQVAEEAEQDFRDLLNIPSN---------YKVLFCHGGGRGQFAGVPLNL----L------GDK-------TTADY 120 (386)
T ss_dssp ------CCHHHHHHHHHHHTCCTT---------EEEEEEESCTTHHHHHHHHHH----C------TTC-------CEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC---------ceEEEEcCCchHHHHHHHHhc----c------CCC-------CeEEE
Confidence 455566666899999999999753 25788 799999998776542 1 122 11 22
Q ss_pred EEecCCCchHHHHHHHHCCccEEEEecC--CCCC-cCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc-ccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLS-LRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV-DSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~gr-mD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI-DpL~eIa~~ 379 (943)
+.++..+|.++..+...| .+..|+++ +.|. +++++++.+|+++ +.+|+.+...|.+|.+ +|+++|+
T Consensus 121 ~~~~~~~~~~~~~a~~~G--~v~~v~~~~~~~G~~~~~~~~~~~l~~~------t~lV~~~h~et~tG~~i~pi~~i~-- 190 (386)
T 3qm2_A 121 VDAGYWAASAIKEAKKYC--APQIIDAKITVDGKRAVKPMREWQLSDN------AAYLHYCPNETIDGIAIDETPDFG-- 190 (386)
T ss_dssp EESSHHHHHHHHHHTTTS--EEEEEECEEEETTEEEECCGGGCCCCTT------CSCEEECSEETTTTEECCCCCCCC--
T ss_pred EeCCHHHHHHHHHHHHhC--CeEEEecCcccCCCCCCchHHHhhcCCC------CcEEEEECCcCCcCEecCchhhhc--
Confidence 333333333232232456 68999998 6786 8888887766544 5678899999999995 9877653
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKG 459 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G 459 (943)
+|+ ++||||+++.. .. |.
T Consensus 191 -----------------------~g~-------~~~vDa~qs~g-~~--pi----------------------------- 208 (386)
T 3qm2_A 191 -----------------------PEV-------VVTADFSSTIL-SA--PL----------------------------- 208 (386)
T ss_dssp -----------------------TTC-------CEEEECTTTTT-SS--CC-----------------------------
T ss_pred -----------------------CCC-------EEEEEcccccC-CC--CC-----------------------------
Confidence 578 99999998765 32 11
Q ss_pred cccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccc--cCCCCCcchHHHHHHH
Q psy11047 460 RLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQ--IPLSKRFRALKLWFVI 537 (943)
Q Consensus 460 ~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~t--ie~SRrfrALklW~tL 537 (943)
.. . ..|-+++++|||++.+.-..|. ..+..+..-.. ..+.+.+|. .+..+ .+.|.
T Consensus 209 --dv---~-------~~~~~~~s~hK~lGP~G~g~l~----v~~~~~~~~~~-~~p~~~~~~~~~~~~~------~~gTp 265 (386)
T 3qm2_A 209 --DV---S-------RYGVIYAGAQKNIGPAGLTLVI----VREDLLGKAHE-SCPSILDYTVLNDNDS------MFNTP 265 (386)
T ss_dssp --CG---G-------GCSEEEEETTTTTCCTTEEEEE----EEGGGCSCCCT-TSCGGGCHHHHHHC-------------
T ss_pred --Cc---c-------ccCEEEEecccccCCCccEEEE----ECHHHHhhhcc-cCCcHHHHHHHhhcCC------CCCCC
Confidence 01 1 1134669999999933222220 00000000000 000011111 01111 12356
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccccccccccc-chhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhC
Q psy11047 538 RNFGIKGLQKHIREIFSGLALPAFLVVDSYCCL-GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 616 (943)
Q Consensus 538 r~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~-g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~ 616 (943)
...|+.|+.+.++.+.+ . |++.+.++ ..+|++++.+.|.+
T Consensus 266 ~v~~i~~l~~Al~~~~~---------------~gG~~~i~~~------------------------~~~l~~~l~~~l~~ 306 (386)
T 3qm2_A 266 PTFAWYLSGLVFKWLKA---------------QGGVAAMHKI------------------------NQQKAELLYGVIDN 306 (386)
T ss_dssp CCSHHHHHHHHHHHHHH---------------HTHHHHHHHH------------------------HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHH---------------hcCHHHHHHH------------------------HHHHHHHHHHHHHH
Confidence 66677778877777532 2 44444332 46789999999988
Q ss_pred CCCeEEecC---CCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 617 DPRFEIPAA---RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 617 ~p~~eIl~~---~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
++-+....+ +..++++|++++. .+...++..|.++|.. +. ...+..+.+|++++.++|++||+++++.|+++.+
T Consensus 307 ~~~~~~~~~~~~rs~~iv~f~~~~~-~~~~~~~~~L~~~gI~-~~-~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~ 383 (386)
T 3qm2_A 307 SDFYRNDVAQANRSRMNVPFQLADN-TLDKVFLEESFAAGLH-AL-KGHRVVGGMRASIYNAMPIEGVKALTDFMIDFER 383 (386)
T ss_dssp CSSEECCBCGGGBCSSEEEEEESSG-GGHHHHHHHHHHTTEE-CC-BCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCHHHcCceEEEEECCCc-cccHHHHHHHHHCCCE-Ee-CCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 843233322 2346899999852 2346788888888853 22 1122234599999999999999999999998865
Q ss_pred H
Q psy11047 694 E 694 (943)
Q Consensus 694 ~ 694 (943)
+
T Consensus 384 ~ 384 (386)
T 3qm2_A 384 R 384 (386)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.2e-15 Score=160.11 Aligned_cols=328 Identities=9% Similarity=-0.025 Sum_probs=197.5
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+.+.+...++.....|...+...+++..+.+|+.+.+|++... ...++|+|||+|+..++.+..
T Consensus 48 v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~--------~~v~~~~g~~~a~~~~~~~~~-------- 111 (388)
T 1j32_A 48 IVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA--------DNILVTNGGKQSIFNLMLAMI-------- 111 (388)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG--------GGEEEESHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh--------hhEEEcCCHHHHHHHHHHHhc--------
Confidence 3344444444332334444557889999999999999975321 368999999999988877541
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
.+| -.|++++.+|.++..++...+.+++.++.+. .+.+|+++|+++|+.+ +.+|+.+..++
T Consensus 112 --~~g---------d~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~n 174 (388)
T 1j32_A 112 --EPG---------DEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPK------TKLLVFNTPSN 174 (388)
T ss_dssp --CTT---------CEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCT
T ss_pred --CCC---------CEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcC------ceEEEEeCCCC
Confidence 122 2477788899999888865444788888874 5789999999998643 56777777888
Q ss_pred ccccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeec
Q psy11047 366 AFLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLL 442 (943)
Q Consensus 366 ~tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~ 442 (943)
.+|.+ +++++|.+ +|++||+ |+++|.+|+++ .+.
T Consensus 175 ptG~~~~~~~l~~i~~--------------------~~~~~~~-------~li~De~~~~~-~~~--------------- 211 (388)
T 1j32_A 175 PTGMVYTPDEVRAIAQ--------------------VAVEAGL-------WVLSDEIYEKI-LYD--------------- 211 (388)
T ss_dssp TTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEECTTTTC-BCT---------------
T ss_pred CCCcCCCHHHHHHHHH--------------------HHHHcCC-------EEEEEccchhc-ccC---------------
Confidence 89998 45888888 9999999 99999999876 320
Q ss_pred chhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccC---cchhhhhcccCccccccCCCCcccccCc
Q psy11047 443 GENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKN---SGALHRTFNVEPLYLRHENSGLAIDYMH 519 (943)
Q Consensus 443 ~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~---~~~L~~af~~~p~YL~~~~~g~~~d~~~ 519 (943)
|. ..+.......+....|.+..++||+++... ...+ ..+..+..-.. .....
T Consensus 212 ----------------~~-~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~-----~~~~~~~~l~~--~~~~~- 266 (388)
T 1j32_A 212 ----------------DA-QHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLA-----GPVPLVKAATK--IQGHS- 266 (388)
T ss_dssp ----------------TC-CCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEE-----CCHHHHHHHHH--HHHTT-
T ss_pred ----------------CC-CCCCHHHccccccCCEEEEeechhccCCcccceEEEE-----eCHHHHHHHHH--HHhhc-
Confidence 00 000000000000135899999999987322 1111 01111000000 00000
Q ss_pred cccCCCCCcchHHHHHHHHHHH--HHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCccccccc
Q psy11047 520 WQIPLSKRFRALKLWFVIRNFG--IKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSY 597 (943)
Q Consensus 520 ~tie~SRrfrALklW~tLr~~G--~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~ 597 (943)
+. ....+..++....+. .+.+.+..++
T Consensus 267 -~~----~~~~~~~~a~~~~l~~~~~~~~~~~~~---------------------------------------------- 295 (388)
T 1j32_A 267 -TS----NVCTFAQYGAIAAYENSQDCVQEMLAA---------------------------------------------- 295 (388)
T ss_dssp -TC----SCCHHHHHHHHHHHHSCSHHHHHHHHH----------------------------------------------
T ss_pred -cc----CCCHHHHHHHHHHHhCCcHHHHHHHHH----------------------------------------------
Confidence 00 112333333333332 1122222222
Q ss_pred CCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhc-cCcEEEeec-ccCCCcEEEEeecCC
Q psy11047 598 FPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNS-KGRLHCVPA-SLRIQGLGRAQNFTR 675 (943)
Q Consensus 598 ~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~-~G~~~~s~t-~~~g~~~lR~v~~~~ 675 (943)
..++++++.+.|++.|++++..+.....+.+++...+....++.++|.+ +|. ++.+. ......++|+++.
T Consensus 296 -----~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi-~v~~g~~~~~~~~iRis~~-- 367 (388)
T 1j32_A 296 -----FAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQV-ATVPGAAFGADDCIRLSYA-- 367 (388)
T ss_dssp -----HHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCE-ECEEGGGGTCTTBEEEECC--
T ss_pred -----HHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCE-EEeChhhhCCCCcEEEEec--
Confidence 2456778888888888888765433223333443211124678888875 575 44442 2323578999665
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q psy11047 676 TTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 676 tt~edId~ll~~I~~~~~~l 695 (943)
+++++|+++++.|.++.+++
T Consensus 368 ~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 368 TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 68999999999998876554
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-14 Score=159.64 Aligned_cols=298 Identities=14% Similarity=0.039 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
....++.+++++++|.+.+ ..+||+|||+++..++.+++..... ..+| +-+|+++...
T Consensus 71 ~~~~~l~~~la~~~g~~~~----------~v~~~~g~t~al~~al~~~~~~~~~----~~~g--------d~vii~~~~~ 128 (416)
T 1qz9_A 71 DLSERLGNRLATLIGARDG----------EVVVTDTTSINLFKVLSAALRVQAT----RSPE--------RRVIVTETSN 128 (416)
T ss_dssp GHHHHHHHHHHTTTTCCTT----------SEEECSCHHHHHHHHHHHHHHHHHH----HSTT--------CCEEEEETTS
T ss_pred HHHHHHHHHHHHHcCCCcc----------cEEEeCChhHHHHHHHHhhcccccc----cCCC--------CcEEEEcCCC
Confidence 3445678899999998643 5789999999987787766421100 0122 2357778889
Q ss_pred chHHHHHH-HH---C--CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 311 HSSVEKAG-LI---G--LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 311 HySv~KAa-~L---G--~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
|.++..++ .+ . +.+++.++. +++|+++|+.+ +.+|+.+..++.+|.+.|+++|.+
T Consensus 129 ~~~~~~~~~~~~~~~~~g~~~~~v~~-------~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~------ 189 (416)
T 1qz9_A 129 FPTDLYIAEGLADMLQQGYTLRLVDS-------PEELPQAIDQD------TAVVMLTHVNYKTGYMHDMQALTA------ 189 (416)
T ss_dssp CHHHHHHHHHHHHHHCSSCEEEEESS-------GGGHHHHCSTT------EEEEEEESBCTTTCBBCCHHHHHH------
T ss_pred CCchHHHHHHHHHHhcCCceEEEeCc-------HHHHHHHhCCC------ceEEEEeccccCcccccCHHHHHH------
Confidence 99877654 22 1 336777776 67788777542 678899999999999999999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccccc
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV 464 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p 464 (943)
+|++||+ |+++|+|++.+ .. ..+
T Consensus 190 --------------l~~~~~~-------~li~D~a~~~g-~~-----------------------------------~~~ 212 (416)
T 1qz9_A 190 --------------LSHECGA-------LAIWDLAHSAG-AV-----------------------------------PVD 212 (416)
T ss_dssp --------------HHHHHTC-------EEEEECTTTTT-TS-----------------------------------CCC
T ss_pred --------------HHHHcCC-------EEEEEcccccc-Cc-----------------------------------CCC
Confidence 9999999 99999999754 21 011
Q ss_pred chhhhhcCCCCeeEEEEcCCCccC--ccCcchhh--hhc--ccCccccccCCCCcc--ccc-Ccccc-CCCCCc-----c
Q psy11047 465 PASLRIQGLGRAQNFTIVPSSLLR--VKNSGALH--RTF--NVEPLYLRHENSGLA--IDY-MHWQI-PLSKRF-----R 529 (943)
Q Consensus 465 ~~r~~l~Gie~ADSItiDpHK~L~--vr~~~~L~--~af--~~~p~YL~~~~~g~~--~d~-~~~ti-e~SRrf-----r 529 (943)
.... .+|.+++++||+++ .+--+.+. ..+ ...+ +.. +..|.. .+. ..+.. ...+++ .
T Consensus 213 -~~~~-----~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~-~~~-g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (416)
T 1qz9_A 213 -LHQA-----GADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQ-PLS-GWFGHSRQFAMEPRYEPSNGIARYLCGTQP 284 (416)
T ss_dssp -HHHH-----TCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCC-SCC-CGGGBCTTSCCCSSCCBCSSGGGGCCSCCC
T ss_pred -hhhc-----CCCEEEecCcccCCCCCCCeEEEEECHHHHhccCC-Ccc-ccCccccccCCCCccCCCcchHHhcCCCCC
Confidence 1111 36999999999975 22101110 000 0011 000 000000 000 01111 001111 1
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHH
Q psy11047 530 ---ALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRL 606 (943)
Q Consensus 530 ---ALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~L 606 (943)
...++.+++.+...++.+..++ ..++
T Consensus 285 ~~~~~a~~~al~~~~~~~~~~~~~~---------------------------------------------------~~~~ 313 (416)
T 1qz9_A 285 ITSLAMVECGLDVFAQTDMASLRRK---------------------------------------------------SLAL 313 (416)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHH---------------------------------------------------HHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHH---------------------------------------------------HHHH
Confidence 1122223333222233333332 2456
Q ss_pred HHHHHHHHhCC-C--CeEEecCC----CccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeec-CCCCH
Q psy11047 607 AQKFEALVLGD-P--RFEIPAAR----HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNF-TRTTN 678 (943)
Q Consensus 607 A~~l~~~L~~~-p--~~eIl~~~----~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~-~~tt~ 678 (943)
++++.+.|.+. | ++++..+. ..++++|++.+ ...+.++|.++|. ++. ..+..++|+++. +.+++
T Consensus 314 ~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~gi-~~~---~~~~~~lRis~~~~~~t~ 385 (416)
T 1qz9_A 314 TDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE----GYAVIQALIDRGV-IGD---YREPRIMRFGFTPLYTTF 385 (416)
T ss_dssp HHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT----HHHHHHHHHTTTE-ECE---EETTTEEEEECCTTTCCH
T ss_pred HHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC----HHHHHHHHHhCCc-Eec---cCCCCeEEEeCcccCCCH
Confidence 77777777764 6 78887653 47888998863 4678888888885 332 235679999776 58999
Q ss_pred HHHHHHHHHHHHHHH
Q psy11047 679 DDITRDWNEIRNTAT 693 (943)
Q Consensus 679 edId~ll~~I~~~~~ 693 (943)
+||+++++.|+++.+
T Consensus 386 ~~i~~~~~~l~~~~~ 400 (416)
T 1qz9_A 386 TEVWDAVQILGEILD 400 (416)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988754
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-14 Score=152.49 Aligned_cols=300 Identities=9% Similarity=-0.004 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
.....+.+++++++|.++ .+++++||+|+..++.+.. .+ .-.|+++..+
T Consensus 88 ~~~~~l~~~la~~~~~~~------------~i~~~sGt~a~~~~l~~~~----------~~---------gd~v~~~~~~ 136 (399)
T 3tqx_A 88 TIHKELEKDISEFLGTDD------------TILYSSCFDANGGLFETLL----------GP---------EDAIISDELN 136 (399)
T ss_dssp HHHHHHHHHHHHHHTCSE------------EEEESCHHHHHHTTHHHHC----------CT---------TCEEEEETTC
T ss_pred hHHHHHHHHHHHHHCCCc------------EEEECchHHHHHHHHHHhc----------CC---------CCEEEECCcc
Confidence 444566778899998753 4677778999987765421 12 2357788999
Q ss_pred chHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccc
Q psy11047 311 HSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 311 HySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i 390 (943)
|.++..++.+.+..++.++. +|+++|++.|+....+|..+.+|+.+...+.+|.+.|+++|.+
T Consensus 137 ~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~------------ 199 (399)
T 3tqx_A 137 HASIIDGIRLCKAQRYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICD------------ 199 (399)
T ss_dssp CHHHHHHHHSCCSEEEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHH------------
T ss_pred cHHHHHHHHHcCCceeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHH------------
Confidence 99999988655557777775 5788999999886655555888888888899999999999999
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhh
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRI 470 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l 470 (943)
+|++||+ |+++|++|+.. .+. . .+ .+ .. ..
T Consensus 200 --------l~~~~~~-------~li~De~~~~~-~~~--~---------------------------~~---~~-~~-~~ 229 (399)
T 3tqx_A 200 --------LADKYNA-------LVMVDDSHAVG-FIG--E---------------------------NG---RG-TP-EY 229 (399)
T ss_dssp --------HHHHTTC-------EEEEECTTTTT-TSS--T---------------------------TS---CC-HH-HH
T ss_pred --------HHHHcCC-------EEEEECCcccc-ccC--C---------------------------CC---Cc-hH-Hh
Confidence 9999999 99999999633 110 0 00 00 01 11
Q ss_pred cCC-CCeeEEEEcCCCccC-ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH--HHHH
Q psy11047 471 QGL-GRAQNFTIVPSSLLR-VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI--KGLQ 546 (943)
Q Consensus 471 ~Gi-e~ADSItiDpHK~L~-vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~--~Gl~ 546 (943)
.++ ...|.++.++||+++ .+.. .+. ..+..+..-.. ....+...+ ....+.++..+..+.. .++.
T Consensus 230 ~~~~~~~di~~~s~sK~~~g~~gG-~~~----~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ 298 (399)
T 3tqx_A 230 CGVADRVDILTGTLGKALGGASGG-YTS----GHKEIIEWLRN----RSRPYLFSN--TVAPVIVATSLKVLELLKTEGP 298 (399)
T ss_dssp HTCTTCCSEEEEESSSSSCSSCCE-EEE----ECHHHHHHHHH----HCHHHHSSC--CCCHHHHHHHHHHHHHHHHTHH
T ss_pred hCCCCCCcEEEecchHhcccCceE-EEE----cCHHHHHHHHH----hCcceeccC--CCcHHHHHHHHHHHHHHhhccH
Confidence 222 467999999999998 5432 110 01111100000 000011111 1112222222222211 2222
Q ss_pred HHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC
Q psy11047 547 KHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR 626 (943)
Q Consensus 547 ~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~ 626 (943)
+..++ ..++++++.+.|++. ++++. ++
T Consensus 299 ~~~~~---------------------------------------------------~~~~~~~l~~~L~~~-g~~~~-~~ 325 (399)
T 3tqx_A 299 QLRKQ---------------------------------------------------LQENSRYFRAGMEKL-GFQLV-PG 325 (399)
T ss_dssp HHHHH---------------------------------------------------HHHHHHHHHHHHHHH-TCCBC-CC
T ss_pred HHHHH---------------------------------------------------HHHHHHHHHHHHHHc-CCCcC-CC
Confidence 22222 234455666666554 66665 66
Q ss_pred CccEEEEEecCCChHHHHHHHHHhccCcEEEeecc----cCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 627 HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS----LRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 627 ~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~----~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
..+++.|.+.+. .....+.++|.++|. ++.+.. ..+..++|++++..+++++++++++.|+++.++
T Consensus 326 ~~~~~~~~~~~~-~~~~~~~~~l~~~gi-~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 395 (399)
T 3tqx_A 326 NHPIIPVMLGDA-QLATNMADHLLQEGI-YVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKK 395 (399)
T ss_dssp SSSEEEEEEECH-HHHHHHHHHHHHTTE-ECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCH-HHHHHHHHHHHHCCC-EEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 788888888642 235788888888875 444432 234579999998899999999999999887654
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-14 Score=155.74 Aligned_cols=326 Identities=8% Similarity=-0.045 Sum_probs=196.8
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
++.+. +.+...+......|... ..+++..+.+|+++.+|++... ...++|+|||+|+..++.+..
T Consensus 42 ~~~v~-~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~--------~~i~~~~g~~~a~~~~~~~l~---- 106 (391)
T 3dzz_A 42 APEIM-ASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPKE--------DWCVFASGVVPAISAMVRQFT---- 106 (391)
T ss_dssp CHHHH-HHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCG--------GGEEEESCHHHHHHHHHHHHS----
T ss_pred CHHHH-HHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCH--------HHEEECCCHHHHHHHHHHHhC----
Confidence 44444 44444444332333322 5789999999999999964321 368999999999988876531
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC---CCCCcCHHHHHHHHHHhhccCCCcEEEEE
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD---DKLSLRGDKLIEAIERDKKKHLIPFFIFS 360 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D---~~grmD~daLe~aI~~d~~kG~~P~~VVa 360 (943)
.+| -.|+++..+|.++..++...+.+++.++.+ .++.+|+++|+++|+.. .+.+|+.
T Consensus 107 ------~~g---------d~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~i 166 (391)
T 3dzz_A 107 ------SPG---------DQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATP-----SVRMMVF 166 (391)
T ss_dssp ------CTT---------CEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTST-----TEEEEEE
T ss_pred ------CCC---------CeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhcc-----CceEEEE
Confidence 122 247788999999998886544578888874 33459999999999732 2667777
Q ss_pred ecCCCccccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcccccccccccee
Q psy11047 361 GLALPAFLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMV 437 (943)
Q Consensus 361 TaGTT~tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~V 437 (943)
+...+.+|.+ +++++|++ +|++||+ ++++|.+|+++ .+.
T Consensus 167 ~~p~nptG~~~~~~~l~~i~~--------------------~~~~~~~-------~li~De~~~~~-~~~---------- 208 (391)
T 3dzz_A 167 CNPHNPIGYAWSEEEVKRIAE--------------------LCAKHQV-------LLISDEIHGDL-VLT---------- 208 (391)
T ss_dssp ESSBTTTTBCCCHHHHHHHHH--------------------HHHHTTC-------EEEEECTTTTC-BCS----------
T ss_pred ECCCCCCCcccCHHHHHHHHH--------------------HHHHCCC-------EEEEecccccc-cCC----------
Confidence 8888899999 77999999 9999999 99999999876 220
Q ss_pred eeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCee--EEEEcCCCccCccC---cchhhhhcccCccc---cccC
Q psy11047 438 VIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQ--NFTIVPSSLLRVKN---SGALHRTFNVEPLY---LRHE 509 (943)
Q Consensus 438 cFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~AD--SItiDpHK~L~vr~---~~~L~~af~~~p~Y---L~~~ 509 (943)
|.... ..... +.+..| .+..++||+++... ...+.. ++.. +...
T Consensus 209 ---------------------g~~~~-~~~~~--~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~----~~~~~~~~~~~ 260 (391)
T 3dzz_A 209 ---------------------DEDIT-PAFTV--DWDAKNWVVSLISPSKTFNLAALHAACAIIP----NPDLRARAEES 260 (391)
T ss_dssp ---------------------SCCCC-CGGGS--CTTTGGGEEEEECSHHHHTCTTTCCEEEECC----SHHHHHHHHHH
T ss_pred ---------------------CCCce-ehhhc--CccccCcEEEEEeChhhccccchhheEEEEC----CHHHHHHHHHH
Confidence 00000 11111 011245 88999999986211 111100 0000 1000
Q ss_pred CCCcccccCccccCCCCCcchHHHHHHHHHHH--HHHHHHHHHHHHhcCCCccccccccccccchhhhhccccccccccc
Q psy11047 510 NSGLAIDYMHWQIPLSKRFRALKLWFVIRNFG--IKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 587 (943)
Q Consensus 510 ~~g~~~d~~~~tie~SRrfrALklW~tLr~~G--~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~ 587 (943)
.. ....++ ...+.+++....+. ...+.+..++
T Consensus 261 ~~----~~~~~~------~~~~~~~a~~~~l~~~~~~~~~~~~~------------------------------------ 294 (391)
T 3dzz_A 261 FF----LAGIGE------PNLLAIPAAIAAYEEGHDWLRELKQV------------------------------------ 294 (391)
T ss_dssp HH----HHTCSS------CCTTHHHHHHHHHHHCHHHHHHHHHH------------------------------------
T ss_pred HH----hhccCC------CCHHHHHHHHHHHhccHHHHHHHHHH------------------------------------
Confidence 00 000001 11122222222221 1222222222
Q ss_pred CCCcccccccCCcHHHHHHHHHHHHHHhC-CCCeEEecCCCccEEEEEecCCChHHHHHHHHHh-ccCcEEEeecc-c--
Q psy11047 588 TNFPNFILSYFPKFQSVRLAQKFEALVLG-DPRFEIPAARHLGMVVIRLLGENILTEKLLKRLN-SKGRLHCVPAS-L-- 662 (943)
Q Consensus 588 ~~~~~~~~~~~p~~~~~~LA~~l~~~L~~-~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~-~~G~~~~s~t~-~-- 662 (943)
..++++++.+.|++ .|++++..+.....+.+++.........+.++|. ++|. ++.+.. .
T Consensus 295 ---------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi-~v~~g~~~~~ 358 (391)
T 3dzz_A 295 ---------------LRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGL-IISAGNGYRG 358 (391)
T ss_dssp ---------------HHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCE-ECEESGGGCT
T ss_pred ---------------HHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCE-EEeCchhhCC
Confidence 24567778888887 7899887654444445666532122567888885 6775 444322 2
Q ss_pred CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 663 RIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 663 ~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
.+..++|++++ +++++|+++++.|.++.++
T Consensus 359 ~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~ 388 (391)
T 3dzz_A 359 NGHEFVRINLA--CPKELVIDGMQRLKQGVLN 388 (391)
T ss_dssp TGGGEEEEECC--SCHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 23589999766 6899999999998877653
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-15 Score=161.50 Aligned_cols=299 Identities=12% Similarity=0.083 Sum_probs=188.2
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.++...+++. .+++++|.+ .+++|+|||+|+..++.+++ + .+ .-.|
T Consensus 54 ~~~~~~~l~~----~la~~~~~~------------~~i~~~~gt~al~~~l~~~~---~------~~---------gd~v 99 (391)
T 3dr4_A 54 VGRFIVEFEK----AFADYCGVK------------HAIACNNGTTALHLALVAMG---I------GP---------GDEV 99 (391)
T ss_dssp CSHHHHHHHH----HHHHHHTCS------------EEEEESSHHHHHHHHHHHHT---C------CT---------TCEE
T ss_pred CChHHHHHHH----HHHHHhCCC------------cEEEeCCHHHHHHHHHHHcC---C------CC---------cCEE
Confidence 4555555555 556777764 47999999999988877642 0 12 2347
Q ss_pred EecCCCchHHHHHHHHCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 305 YCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 305 ~~S~~aHySv~KAa~LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+++..+|.+...++..-+..++.++++ +++.+|+++|+++|+++ +.+|+. ++.+|.+.|+++|.+
T Consensus 100 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~---~n~tG~~~~~~~i~~----- 165 (391)
T 3dr4_A 100 IVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPR------TKAIMP---VHLYGQICDMDPILE----- 165 (391)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTT------EEEECC---BCGGGCCCCHHHHHH-----
T ss_pred EECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCCC------ceEEEE---ECCCCChhhHHHHHH-----
Confidence 788999999988886544588899988 67899999999888643 444543 468899999999999
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccc
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHC 463 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~ 463 (943)
+|++||+ ++++|+||+.+..+ .
T Consensus 166 ---------------l~~~~~~-------~li~D~a~~~g~~~------------------------------------~ 187 (391)
T 3dr4_A 166 ---------------VARRHNL-------LVIEDAAEAVGATY------------------------------------R 187 (391)
T ss_dssp ---------------HHHHTTC-------EEEEECTTCTTCEE------------------------------------T
T ss_pred ---------------HHHHcCC-------EEEEECcccccceE------------------------------------C
Confidence 9999999 99999999854121 0
Q ss_pred cchhhhhcCCCCeeEEEEcCCCccCc-------cCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHH
Q psy11047 464 VPASLRIQGLGRAQNFTIVPSSLLRV-------KNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFV 536 (943)
Q Consensus 464 p~~r~~l~Gie~ADSItiDpHK~L~v-------r~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~t 536 (943)
.. ....+..++.+++++||+++. .....+...+. .+..++ ...+...+....+..++...+..+
T Consensus 188 ~~---~~~~~~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~---~~~~~g---~~~~~~~~~~~~g~~~~~~~l~aa 258 (391)
T 3dr4_A 188 GK---KSGSLGDCATFSFFGNAIITTGEGGMITTNDDDLAAKMR---LLRGQG---MDPNRRYWFPIVGFNYRMTNIQAA 258 (391)
T ss_dssp TE---ETTSSSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHH---HHHBTT---CCTTSTTCCSSCCCBCBCCHHHHH
T ss_pred Ce---eecccCCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHH---HHHhcC---CCCCCcccccccccccCCCHHHHH
Confidence 00 011122478888889999972 11111111110 011111 000001111112223333344444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhC
Q psy11047 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 616 (943)
Q Consensus 537 Lr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~ 616 (943)
+......++.+.+++ ..++++++.+.|.+
T Consensus 259 ~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~l~~~L~~ 287 (391)
T 3dr4_A 259 IGLAQLERVDEHLAA---------------------------------------------------RERVVGWYEQKLAR 287 (391)
T ss_dssp HHHHHHHTHHHHHHH---------------------------------------------------HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHH---------------------------------------------------HHHHHHHHHHHhhc
Confidence 444444555555554 34677888888888
Q ss_pred CCCeEEecC--C-----CccEEEEEecCC-ChHHHHHHHHHhccCcEEEeecc--------cC-------------CCcE
Q psy11047 617 DPRFEIPAA--R-----HLGMVVIRLLGE-NILTEKLLKRLNSKGRLHCVPAS--------LR-------------IQGL 667 (943)
Q Consensus 617 ~p~~eIl~~--~-----~l~iV~Fr~~g~-n~l~~~Ll~~L~~~G~~~~s~t~--------~~-------------g~~~ 667 (943)
. ++++..+ + ...++.+++.+. .....++.++|.++|.. +.+.. +. ....
T Consensus 288 ~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~-v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (391)
T 3dr4_A 288 L-GNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIE-SRPVFHPMHIMPPYAHLATDDLKIAEACGVDG 365 (391)
T ss_dssp G-TTSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCC-CEECCCCGGGSGGGGGGCCTTCHHHHHHHHHE
T ss_pred C-CccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCc-eeecCCccccChhhhhcCcCCChHHHHHHhCe
Confidence 7 7877655 2 233566776531 12257888889888863 32210 00 1358
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 668 GRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 668 lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
+|+.+++.+|++||+++++.|+++
T Consensus 366 lrl~~~~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 366 LNLPTHAGLTEADIDRVIAALDQV 389 (391)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHTT
T ss_pred EEccCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-14 Score=157.66 Aligned_cols=125 Identities=12% Similarity=-0.024 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
-..+.+++++++|.+ ..++++|||+|+..++.+.+ + .+| -.|+++..+|.
T Consensus 44 ~~~l~~~la~~~g~~------------~~i~~~~gt~al~~~~~~~~---~------~~g---------d~Vl~~~~~~~ 93 (418)
T 2c81_A 44 ERKFAKAFADFNGVP------------YCVPTTSGSTALMLALEALG---I------GEG---------DEVIVPSLTWI 93 (418)
T ss_dssp HHHHHHHHHHHHTCS------------EEEEESCHHHHHHHHHHHTT---C------CTT---------CEEEEESSSCT
T ss_pred HHHHHHHHHHHhCCC------------cEEEeCCHHHHHHHHHHHcC---C------CCc---------CEEEECCCccH
Confidence 345667788899875 25899999999988877531 0 122 24778899999
Q ss_pred HHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 313 SVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 313 Sv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
+...++...+.+++.++++. ++.+|+++|+++|+.+ +.+|+.+ +.+|.+.|+++|.+
T Consensus 94 ~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~---~~~G~~~~~~~i~~------------- 151 (418)
T 2c81_A 94 ATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITDK------TKAIIPV---HLFGSMANMDEINE------------- 151 (418)
T ss_dssp HHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCTT------EEEECCB---CCTTCCCCHHHHHH-------------
T ss_pred hHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCCC------CeEEEEe---CCcCCcccHHHHHH-------------
Confidence 99988865444888899875 7899999999888643 4455543 46899999999999
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|++|+.+
T Consensus 152 -------~~~~~~~-------~li~D~a~~~~ 169 (418)
T 2c81_A 152 -------IAQEHNL-------FVIEDCAQSHG 169 (418)
T ss_dssp -------HHHHTTC-------EEEEECTTCTT
T ss_pred -------HHHHCCC-------EEEEECccccc
Confidence 9999999 99999999876
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=174.38 Aligned_cols=131 Identities=12% Similarity=0.060 Sum_probs=101.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
...+.+++++|.+. ..++++|+|+||..++.+.. .+| -.|+++..+|.|+
T Consensus 209 ~~ee~la~l~G~d~-----------~i~~~~Gtt~a~~~~i~al~----------~~G---------D~Vlv~~~~h~s~ 258 (755)
T 2vyc_A 209 ESEKYAARVFGADR-----------SWSVVVGTSGSNRTIMQACM----------TDN---------DVVVVDRNCHKSI 258 (755)
T ss_dssp HHHHHHHHHHTCSE-----------EEEESSHHHHHHHHHHHHHC----------CTT---------CEEEEESSCCHHH
T ss_pred HHHHHHHHHhCCCc-----------eEEECCcHHHHHHHHHHHhc----------CCC---------CEEEECCCchHHH
Confidence 34567899999864 35678888899988876531 122 2578899999999
Q ss_pred HHHHHHCCccEEEEecCCC-----CCc-----CHHHHHHHHHHh----hccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 315 EKAGLIGLVNMRYIESDDK-----LSL-----RGDKLIEAIERD----KKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~-----grm-----D~daLe~aI~~d----~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
..++.+.+..++.++++.+ |.+ |+++|+++|++. .+++..|.+++++.+ |.+|.+.|+++|++
T Consensus 259 ~~~~~~~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~-- 335 (755)
T 2vyc_A 259 EQGLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQD-- 335 (755)
T ss_dssp HHHHHHHCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHH--
T ss_pred HHHHHHcCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHH--
Confidence 9998654457888887532 356 999999999863 124556667777776 57999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++|+|+||++.
T Consensus 336 ------------------ia~~~~~-------~livDeA~~~~ 353 (755)
T 2vyc_A 336 ------------------LLEKTSD-------RLHFDEAWYGY 353 (755)
T ss_dssp ------------------HHTTTCS-------EEEEECTTCTT
T ss_pred ------------------HHHHcCC-------EEEEECcCchh
Confidence 9999999 99999999865
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-15 Score=163.33 Aligned_cols=298 Identities=12% Similarity=-0.031 Sum_probs=180.8
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE-cCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL-QTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf-TsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
.+|...++..++.+++++++|.+.. ...+| |+|||+|+..++.+.. .+ + +
T Consensus 72 ~~~~~~~~~~~~~~~la~~~g~~~~---------~~i~~~t~g~t~al~~~~~~l~----------~~---------g-v 122 (398)
T 2fyf_A 72 RQAPVKNLVGRVRSGLAELFSLPDG---------YEVILGNGGATAFWDAAAFGLI----------DK---------R-S 122 (398)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTCCTT---------CEEEEEETCHHHHHHHHHHHTC----------SS---------C-E
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCC---------ceEEEeCCchhHHHHHHHHHhc----------CC---------C-e
Confidence 4676777778899999999999742 25788 9999999988876531 11 2 2
Q ss_pred EEecCCCchHH-HHHH-HHC-CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 304 AYCSDQAHSSV-EKAG-LIG-LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 304 V~~S~~aHySv-~KAa-~LG-~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
++++...|... .+.+ ..+ +..++.|+++ ++.++..+ +. ..+.+|+.+..++.+|.+.|+++|.+
T Consensus 123 ~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~g~~~~~~----i~------~~~~~v~~~~~~nptG~~~~~~~i~~-- 189 (398)
T 2fyf_A 123 LHLTYGEFSAKFASAVSKNPFVGEPIIITSD-PGSAPEPQ----TD------PSVDVIAWAHNETSTGVAVAVRRPEG-- 189 (398)
T ss_dssp EEEECSHHHHHHHHHHHHCTTSCCCEEEECC-TTCCCCCC----CC------TTCSEEEEESEETTTTEECCCCCCTT--
T ss_pred EEEeCCHHHHHHHHHHHHhCCCCceEEEecC-CCCCCCcc----cc------CCCCEEEEeCcCCCcceecchHHhhh--
Confidence 33355556432 2233 342 3467788887 44433221 21 13678888889999999999999998
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCc
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGR 460 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~ 460 (943)
+ +|+ |+|+|+|++.+ ..
T Consensus 190 ------------------~---~~~-------~vivD~a~~~~-~~---------------------------------- 206 (398)
T 2fyf_A 190 ------------------S---DDA-------LVVIDATSGAG-GL---------------------------------- 206 (398)
T ss_dssp ------------------C---C-C-------EEEEECTTTTT-TS----------------------------------
T ss_pred ------------------h---cCC-------eEEEEeccccC-Cc----------------------------------
Confidence 5 899 99999999765 21
Q ss_pred ccccchhhhhcCCCCeeEEEEcCCCccCccCc-ch------hhhhcc-------cCccccccCCCCcccccC--ccccCC
Q psy11047 461 LHCVPASLRIQGLGRAQNFTIVPSSLLRVKNS-GA------LHRTFN-------VEPLYLRHENSGLAIDYM--HWQIPL 524 (943)
Q Consensus 461 ~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~-~~------L~~af~-------~~p~YL~~~~~g~~~d~~--~~tie~ 524 (943)
..+ +..+|.++.++||+++.... .. +.+.+. ..+.|+.... ..... .+. .+
T Consensus 207 -~~~--------~~~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~ 273 (398)
T 2fyf_A 207 -PVD--------IAETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPI---AVENSLKNQT-YN 273 (398)
T ss_dssp -CCC--------GGGCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHH---HHHHHTTTCC-SS
T ss_pred -ccC--------cccCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHH---HhhhcccCCC-CC
Confidence 011 11369999999999984321 11 111110 0022332110 00000 000 01
Q ss_pred CCC-cchHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHH
Q psy11047 525 SKR-FRALKLWFVIRNFGIKG-LQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQ 602 (943)
Q Consensus 525 SRr-frALklW~tLr~~G~~G-l~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~ 602 (943)
+-. .....+..+++.+...| +.+..++
T Consensus 274 t~~~~~~~a~~~al~~~~~~g~~~~~~~~--------------------------------------------------- 302 (398)
T 2fyf_A 274 TPAIATLALLAEQIDWLVGNGGLDWAVKR--------------------------------------------------- 302 (398)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSHHHHHHH---------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHccCHHHHHHH---------------------------------------------------
Confidence 111 11123333444443333 4444443
Q ss_pred HHHHHHHHHHHHhCCCCeEEec-CC--Ccc-EEEEEecC-CChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCC
Q psy11047 603 SVRLAQKFEALVLGDPRFEIPA-AR--HLG-MVVIRLLG-ENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTT 677 (943)
Q Consensus 603 ~~~LA~~l~~~L~~~p~~eIl~-~~--~l~-iV~Fr~~g-~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt 677 (943)
..++++++.+.|++.|++++.. ++ ..+ +++|+++. .+ ..++.++|.++|..........+..++|++++..++
T Consensus 303 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t 380 (398)
T 2fyf_A 303 TADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVD--AGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVE 380 (398)
T ss_dssp HHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSC--HHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSC
T ss_pred HHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCC--HHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCC
Confidence 3457788888888888999874 23 466 89999853 22 568888888887643222111235789999988999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11047 678 NDDITRDWNEIRNTAT 693 (943)
Q Consensus 678 ~edId~ll~~I~~~~~ 693 (943)
++|++++++.|+++.+
T Consensus 381 ~e~i~~~~~~l~~~l~ 396 (398)
T 2fyf_A 381 PDDVSALTECVDWVVE 396 (398)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988754
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.3e-14 Score=157.40 Aligned_cols=121 Identities=16% Similarity=0.079 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
..++.+++++++|.+ ..++|+|||+||..++.+.. .+| -.|+++..+|.
T Consensus 58 ~~~l~~~la~~~g~~------------~~~~~~~gt~a~~~al~~l~----------~~g---------d~vi~~~~~~~ 106 (412)
T 2cb1_A 58 AKALEERLKALEGAL------------EAVVLASGQAATFAALLALL----------RPG---------DEVVAAKGLFG 106 (412)
T ss_dssp HHHHHHHHHHHHTCS------------EEEEESSHHHHHHHHHHTTC----------CTT---------CEEEEETTCCH
T ss_pred HHHHHHHHHHHhCCC------------cEEEECCHHHHHHHHHHHHh----------CCC---------CEEEEeCCCch
Confidence 334556788888874 37899999999988877531 122 24777888999
Q ss_pred HHHHHHH----HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccc
Q psy11047 313 SVEKAGL----IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388 (943)
Q Consensus 313 Sv~KAa~----LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~ 388 (943)
++..+.. ..+.+++.++.| +++|+++|+++ +.+|+.+..++.+|.+.|+++|++
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~~~------~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~~---------- 164 (412)
T 2cb1_A 107 QTIGLFGQVLSLMGVTVRYVDPE------PEAVREALSAK------TRAVFVETVANPALLVPDLEALAT---------- 164 (412)
T ss_dssp HHHHHHHHTTTTTTCEEEEECSS------HHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH----------
T ss_pred hHHHHHHHHHHHcCCEEEEECCC------HHHHHHHhccC------CeEEEEeCCCCCCcccccHHHHHH----------
Confidence 8877652 223467777764 88888888653 678888889999999999999999
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+|+|++|+.+
T Consensus 165 ----------l~~~~~~-------~li~D~~~~~~ 182 (412)
T 2cb1_A 165 ----------LAEEAGV-------ALVVDNTFGAA 182 (412)
T ss_dssp ----------HHHHHTC-------EEEEECGGGTT
T ss_pred ----------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999865
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=156.23 Aligned_cols=142 Identities=11% Similarity=-0.011 Sum_probs=111.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|..++...++...+.+|+++++|.+.. .....++|+|||+||..++.+.. .+| -
T Consensus 74 y~~~~g~~~l~~~l~~~l~~~~g~~~~-------~~~~i~~~~g~~~a~~~~~~~l~----------~~g---------d 127 (407)
T 3nra_A 74 YTEYRGDLGIRDLLAPRLAAFTGAPVD-------ARDGLIITPGTQGALFLAVAATV----------ARG---------D 127 (407)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHTSCCC-------TTTSEEEESHHHHHHHHHHHTTC----------CTT---------C
T ss_pred cCCCCCCHHHHHHHHHHHHHHhCCCCC-------CCCcEEEeCCcHHHHHHHHHHhC----------CCC---------C
Confidence 444555678888999999999998521 00268999999999988765421 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEec------CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---H
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIES------DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---Y 373 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~------D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L 373 (943)
.|+++.-+|.++..++...+.+++.++. ++++.+|+++|+++|+.. +.+|+.+...+.+|.+-| +
T Consensus 128 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l 201 (407)
T 3nra_A 128 KVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAG------ARVFLFSNPNNPAGVVYSAEEI 201 (407)
T ss_dssp EEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTT------CCEEEEESSCTTTCCCCCHHHH
T ss_pred EEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhC------CcEEEEcCCCCCCCcccCHHHH
Confidence 4777888999999888654558888988 478899999999999763 456667777888999988 8
Q ss_pred HHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 374 CCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 374 ~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++|++ +|++||+ |+++|.+|+++
T Consensus 202 ~~i~~--------------------~~~~~~~-------~li~Dea~~~~ 224 (407)
T 3nra_A 202 GQIAA--------------------LAARYGA-------TVIADQLYSRL 224 (407)
T ss_dssp HHHHH--------------------HHHHHTC-------EEEEECTTTTS
T ss_pred HHHHH--------------------HHHHcCC-------EEEEEcccccc
Confidence 88888 9999999 99999999876
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-14 Score=157.39 Aligned_cols=302 Identities=10% Similarity=0.004 Sum_probs=184.4
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.++...++-.++.+++++++|.++ ..+||+|||+|+..++.. +. +| + .|
T Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~-----------~v~~~~sgt~a~~~~~~~-----~~------~g--------d-~v 77 (379)
T 3ke3_A 29 MSKAFQEVMNDLLSNLKTVYNAEA-----------AVIIPGSGTYGMEAVARQ-----LT------ID--------E-DC 77 (379)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCSE-----------EEEEESCHHHHHHHHHHH-----HC------TT--------C-EE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCC-----------EEEEcCChhHHHHHHHHh-----CC------CC--------C-eE
Confidence 367777888889999999999873 468999999998776522 11 22 1 35
Q ss_pred EecCCCchHHH--HHH-HHCC-ccEEEEecCCC---------CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc
Q psy11047 305 YCSDQAHSSVE--KAG-LIGL-VNMRYIESDDK---------LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD 371 (943)
Q Consensus 305 ~~S~~aHySv~--KAa-~LG~-~~v~~Vp~D~~---------grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID 371 (943)
++++.+|++.. ..+ ..|. ..++.++++.. +.+|+++|+++|+... +.+|+.+...+.+|.+.
T Consensus 78 i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~~~G~~~ 152 (379)
T 3ke3_A 78 LIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDK-----SAIVYAPHVETSSGIIL 152 (379)
T ss_dssp EEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHT-----CSEEEEESEETTTTEEC
T ss_pred EEEeCCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcC-----CcEEEEEeecCCCceeC
Confidence 55566777642 223 3463 46778876432 3689999999996531 55788888889999999
Q ss_pred c---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhH
Q psy11047 372 S---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILT 448 (943)
Q Consensus 372 p---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n 448 (943)
| +++|++ +|++||+ ++|+|++++|. . +
T Consensus 153 ~~~~l~~i~~--------------------~~~~~~~-------~li~D~~~~g~--~--~------------------- 182 (379)
T 3ke3_A 153 SEEYIKALSE--------------------AVHSVGG-------LLVIDCIASGC--V--W------------------- 182 (379)
T ss_dssp CHHHHHHHHH--------------------HHHHTTC-------EEEEECTTCTT--C--C-------------------
T ss_pred CHHHHHHHHH--------------------HHHHcCC-------EEEEEecccCC--c--c-------------------
Confidence 9 999999 9999999 99999998732 1 0
Q ss_pred HHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCc-ch------hhhhcc--cCccccccCCCCcccccCc
Q psy11047 449 EKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNS-GA------LHRTFN--VEPLYLRHENSGLAIDYMH 519 (943)
Q Consensus 449 ~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~-~~------L~~af~--~~p~YL~~~~~g~~~d~~~ 519 (943)
.. ... ..+|.+++++|||++...+ .. +.+.+. ....|.. ++..
T Consensus 183 --------------~~-~~~-----~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~--------~~~~ 234 (379)
T 3ke3_A 183 --------------LD-MKE-----LGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSL--------DLKQ 234 (379)
T ss_dssp --------------CC-HHH-----HTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTT--------CHHH
T ss_pred --------------cc-ccc-----cCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceee--------cHHH
Confidence 11 111 1469999999999872211 11 111111 0011100 0000
Q ss_pred cc-----c-CCCCCcc---h-H---HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccc
Q psy11047 520 WQ-----I-PLSKRFR---A-L---KLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKL 586 (943)
Q Consensus 520 ~t-----i-e~SRrfr---A-L---klW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~ 586 (943)
|. . .++|.+. . . .+-.++..+...|+.+..++
T Consensus 235 ~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~----------------------------------- 279 (379)
T 3ke3_A 235 WLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDA----------------------------------- 279 (379)
T ss_dssp HHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHH-----------------------------------
T ss_pred HHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHH-----------------------------------
Confidence 00 0 1222211 1 1 11122232322333333332
Q ss_pred cCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC--Ccc-EEEEEecCCChHHHHHHHHHhccCcEEEeecc--
Q psy11047 587 QTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR--HLG-MVVIRLLGENILTEKLLKRLNSKGRLHCVPAS-- 661 (943)
Q Consensus 587 ~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~--~l~-iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~-- 661 (943)
..++++++.+.|.+. +++++.++ ..+ ++.|...+. .....+.|.++|.+ +.+..
T Consensus 280 ----------------~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~L~~~Gi~-v~~g~~~ 338 (379)
T 3ke3_A 280 ----------------QWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTERD---DMHKGSAFAEAGLQ-IAAGVPL 338 (379)
T ss_dssp ----------------HHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSCH---HHHSSHHHHHTTCC-CEECCCC
T ss_pred ----------------HHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCCc---chHHHHHHHHCCeE-EeCCccc
Confidence 356788888888876 78877654 244 444554321 12235667777863 33321
Q ss_pred ----cCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 662 ----LRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 662 ----~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
..+...+|++++..+|++||+++++.|+++.+++.
T Consensus 339 ~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 339 KVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp SSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 11256899988888999999999999998877654
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=157.55 Aligned_cols=131 Identities=9% Similarity=-0.054 Sum_probs=100.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
+..++...++|. .+++++|.+ .+++|+|||+||..++.+.+ + .+ .-
T Consensus 32 ~~~~~~~~~l~~----~la~~~~~~------------~~i~~~sgt~al~~~l~~l~---~------~~---------gd 77 (373)
T 3frk_A 32 FILGDEDKKFEQ----EFADYCNVN------------YCIGCGNGLDALHLILKGYD---I------GF---------GD 77 (373)
T ss_dssp CSSSHHHHHHHH----HHHHHHTSS------------EEEEESCHHHHHHHHHHHTT---C------CT---------TC
T ss_pred ccCCchHHHHHH----HHHHHhCCC------------eEEEeCCHHHHHHHHHHHcC---C------CC---------cC
Confidence 445566666665 456777764 37999999999988877531 0 12 23
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
.|+++..+|.++..++...+.+++.++.+ +++.+|+++|+++|+++ +.+|+ .++.+|.+.|+++|.+
T Consensus 78 ~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~---~~n~~G~~~~l~~i~~--- 145 (373)
T 3frk_A 78 EVIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEK------TKAII---AVHLYGQPADMDEIKR--- 145 (373)
T ss_dssp EEEEETTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCTT------EEEEE---EECCTTCCCCHHHHHH---
T ss_pred EEEECCCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCCC------CeEEE---EECCCcCcccHHHHHH---
Confidence 57889999999998885433478888887 67899999999888653 45555 3457899999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|+|++.+
T Consensus 146 -----------------l~~~~~~-------~li~D~a~~~g 163 (373)
T 3frk_A 146 -----------------IAKKYNL-------KLIEDAAQAHG 163 (373)
T ss_dssp -----------------HHHHHTC-------EEEEECTTCTT
T ss_pred -----------------HHHHcCC-------EEEEECCcccC
Confidence 9999999 99999999865
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-14 Score=153.16 Aligned_cols=315 Identities=12% Similarity=0.055 Sum_probs=192.2
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+.+.+...+... .+...+...++|. .+++++|.+ .+++|+|||+|+..++.+.+ +
T Consensus 21 ~~~~~~~~~~~~--~~~~~~~~~~l~~----~la~~~~~~------------~~~~~~~gt~a~~~~~~~~~---~---- 75 (374)
T 3uwc_A 21 YLNDLREFIKTA--DFTLGAELEKFEK----RFAALHNAP------------HAIGVGTGTDALAMSFKMLN---I---- 75 (374)
T ss_dssp HHHHHHHHHHHT--CCSSCHHHHHHHH----HHHHHTTCS------------EEEEESCHHHHHHHHHHHTT---C----
T ss_pred HHHHHHHHHHcC--CcccChhHHHHHH----HHHHHhCCC------------cEEEeCCHHHHHHHHHHHcC---C----
Confidence 445555554433 2444566665554 667788764 37899999999987776532 0
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcc
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~t 367 (943)
.+ .-.|+++..+|.++..++...+.+++.++.++++.+|+++|+++++++ +.+|+ .++.+
T Consensus 76 --~~---------gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~---~~n~~ 135 (374)
T 3uwc_A 76 --GA---------GDEVITCANTFIASVGAIVQAGATPVLVDSENGYVIDPEKIEAAITDK------TKAIM---PVHYT 135 (374)
T ss_dssp --CT---------TCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCTT------EEEEC---CBCGG
T ss_pred --CC---------CCEEEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCCC------ceEEE---EeCCc
Confidence 12 235778899999999888654458899999888999999999888653 44554 55678
Q ss_pred cccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhh
Q psy11047 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENIL 447 (943)
Q Consensus 368 GaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~ 447 (943)
|.+.|+++|.+ +|++||+ ++++|++|+.+..+
T Consensus 136 G~~~~~~~i~~--------------------~~~~~~~-------~li~D~~~~~g~~~--------------------- 167 (374)
T 3uwc_A 136 GNIADMPALAK--------------------IAKKHNL-------HIVEDACQTILGRI--------------------- 167 (374)
T ss_dssp GCCCCHHHHHH--------------------HHHHTTC-------EEEEECTTCTTCEE---------------------
T ss_pred CCcCCHHHHHH--------------------HHHHcCC-------EEEEeCCCccCcee---------------------
Confidence 99999999999 9999999 99999999865111
Q ss_pred HHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCC--CccCc-cCcchhh-h--hcccCccccccCCCCcccccCccc
Q psy11047 448 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPS--SLLRV-KNSGALH-R--TFNVEPLYLRHENSGLAIDYMHWQ 521 (943)
Q Consensus 448 n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpH--K~L~v-r~~~~L~-~--af~~~p~YL~~~~~g~~~d~~~~t 521 (943)
..... + ..+|.+++++| |+++. .....+. . .+......+... +....+. .
T Consensus 168 --------------~~~~~-----~-~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~--~ 223 (374)
T 3uwc_A 168 --------------NDKFV-----G-SWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNH--GLINRDV--C 223 (374)
T ss_dssp --------------TTEET-----T-SSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBT--TEEETTE--E
T ss_pred --------------CCeec-----c-ccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhc--CccccCc--c
Confidence 00010 1 13589999977 99873 2222110 0 000000011110 0000000 0
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcH
Q psy11047 522 IPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKF 601 (943)
Q Consensus 522 ie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~ 601 (943)
...+-.++...+...+.....+++.+.+++
T Consensus 224 ~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~-------------------------------------------------- 253 (374)
T 3uwc_A 224 VEYGINCRMDTIQAVIANRLMNQLETITEK-------------------------------------------------- 253 (374)
T ss_dssp SSCCCBCBCCHHHHHHHHHHGGGHHHHHHH--------------------------------------------------
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 011112222233333433333444444444
Q ss_pred HHHHHHHHHHHHHhCCCC-eEEecCCC---ccEEEEEecCCChHHHHHHHHHhccCcEEEeecc---------cC-----
Q psy11047 602 QSVRLAQKFEALVLGDPR-FEIPAARH---LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS---------LR----- 663 (943)
Q Consensus 602 ~~~~LA~~l~~~L~~~p~-~eIl~~~~---l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~---------~~----- 663 (943)
..++++++.+.|.+.++ +++...+. .+.+.|.+...+ ...+.++|.++|.. +.+.. +.
T Consensus 254 -~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~L~~~gi~-v~~~~~~~~~~~~~~~~~~~~ 329 (374)
T 3uwc_A 254 -RRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVKY--RDQLFQYLKDNGIE-VKIHYPIAMHLQPAAKSLGYQ 329 (374)
T ss_dssp -HHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEETT--HHHHHHHHHHTTBC-CBCSCSSCGGGSGGGGGGCCC
T ss_pred -HHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcCC--HHHHHHHHHHCCCc-cccCCCCccccChhhhhcCCc
Confidence 35678888889988888 88864332 222233333222 46788888888853 32210 00
Q ss_pred ----------CCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 664 ----------IQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 664 ----------g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
....+|+++++.+|++||+++++.|+++.+
T Consensus 330 ~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~ 369 (374)
T 3uwc_A 330 QGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYL 369 (374)
T ss_dssp TTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH
Confidence 026899999999999999999999988754
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.9e-14 Score=152.83 Aligned_cols=326 Identities=8% Similarity=-0.088 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284 (943)
Q Consensus 205 ~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~ 284 (943)
+.+. +.+...+......|...+...+++..+.+|+.+..|++... ...++|+|||+|+..++.+..
T Consensus 57 ~~v~-~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~--------~~v~~t~g~~~al~~~~~~l~----- 122 (406)
T 1xi9_A 57 EHMK-EAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITP--------DDVRVTAAVTEALQLIFGALL----- 122 (406)
T ss_dssp HHHH-HHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG--------GGEEEESHHHHHHHHHHHHHC-----
T ss_pred HHHH-HHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCH--------HHEEEcCChHHHHHHHHHHhC-----
Confidence 4444 44444443322234444456889999999999998875321 368999999999988876531
Q ss_pred hhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEec
Q psy11047 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGL 362 (943)
Q Consensus 285 ~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTa 362 (943)
.+| -.|++++.+|.++..++...+.+++.++.+. .+.+|+++|++.|+.+ +.+|+.+.
T Consensus 123 -----~~g---------d~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~ 182 (406)
T 1xi9_A 123 -----DPG---------DEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDR------TKAIAVIN 182 (406)
T ss_dssp -----CTT---------CEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTT------EEEEEEES
T ss_pred -----CCC---------CEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcC------ceEEEEEC
Confidence 122 2477788899999888864445788888763 5679999999998653 56667777
Q ss_pred CCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeee
Q psy11047 363 ALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVI 439 (943)
Q Consensus 363 GTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcF 439 (943)
..+.+|.+-| +++|.+ +|++||+ |+++|.+|+++ .+.
T Consensus 183 p~nptG~~~~~~~l~~i~~--------------------~a~~~~~-------~li~De~~~~~-~~~------------ 222 (406)
T 1xi9_A 183 PNNPTGALYDKKTLEEILN--------------------IAGEYEI-------PVISDEIYDLM-TYE------------ 222 (406)
T ss_dssp SCTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------CEEEECTTTTC-BSS------------
T ss_pred CCCCCCCCcCHHHHHHHHH--------------------HHHHcCC-------EEEEEcCcccc-ccC------------
Confidence 7888998754 888888 9999999 99999999876 320
Q ss_pred eecchhhhHHHHHHHhhccCcccccchhhhhcCCCCe-eEEEEcCCCccCcc---CcchhhhhcccCc----cccccCCC
Q psy11047 440 RLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRA-QNFTIVPSSLLRVK---NSGALHRTFNVEP----LYLRHENS 511 (943)
Q Consensus 440 R~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~A-DSItiDpHK~L~vr---~~~~L~~af~~~p----~YL~~~~~ 511 (943)
+. ...... +. ... |-++.++||+++.. -...+. ...+ ..+..-.
T Consensus 223 -------------------~~--~~~~~~-~~--~~~~~i~~~s~sK~~~~~G~r~G~~~~---~~~~~~~~~l~~~l~- 274 (406)
T 1xi9_A 223 -------------------GE--HISPGS-LT--KDVPVIVMNGLSKVYFATGWRLGYMYF---VDPENKLSEVREAID- 274 (406)
T ss_dssp -------------------SC--CCCHHH-HC--SSSCEEEEEESTTTTCCGGGCCEEEEE---ECTTCTTHHHHHHHH-
T ss_pred -------------------CC--CCCHHH-cC--CCceEEEEeccccccCCCccEEEEEEE---ecCchhHHHHHHHHH-
Confidence 00 001111 21 234 67888999998722 111110 0111 1110000
Q ss_pred CcccccCccccCCCCCcchHHHHHHHHHH--HHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCC
Q psy11047 512 GLAIDYMHWQIPLSKRFRALKLWFVIRNF--GIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTN 589 (943)
Q Consensus 512 g~~~d~~~~tie~SRrfrALklW~tLr~~--G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~ 589 (943)
....++ .+ ...+..++....+ +.+.+.+..++
T Consensus 275 ----~~~~~~--~~--~~~~~~~a~~~~l~~~~~~~~~~~~~-------------------------------------- 308 (406)
T 1xi9_A 275 ----RLARIR--LC--PNTPAQFAAIAGLTGPMDYLKEYMKK-------------------------------------- 308 (406)
T ss_dssp ----HHHHHT--CC--SCSHHHHHHHHHHHSCCHHHHHHHHH--------------------------------------
T ss_pred ----HHHHhh--cC--CCHHHHHHHHHHHhCCcHHHHHHHHH--------------------------------------
Confidence 000000 00 1122222222222 11222222222
Q ss_pred CcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEE-EecCC-ChHHHHHHHHHh-ccCcEEEeecc-c--C
Q psy11047 590 FPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVI-RLLGE-NILTEKLLKRLN-SKGRLHCVPAS-L--R 663 (943)
Q Consensus 590 ~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~F-r~~g~-n~l~~~Ll~~L~-~~G~~~~s~t~-~--~ 663 (943)
..++++++.+.|.+.|++++.. +..++++| ++... +....++.++|. ++|. ++.+.. . .
T Consensus 309 -------------~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi-~v~~g~~f~~~ 373 (406)
T 1xi9_A 309 -------------LKERRDYIYKRLNEIPGISTTK-PQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHV-LFVHGSGFGEY 373 (406)
T ss_dssp -------------HHHHHHHHHHHHHTSTTEECCC-CCBSSEECCEECSCSCSSHHHHHHHHHHHHCE-ECEEGGGGCGG
T ss_pred -------------HHHHHHHHHHHHHhCCCCeeec-CCeeEEEEEecCccCCCCHHHHHHHHHHhCCE-EEeCchhcCCC
Confidence 2355677888888888988764 44455554 66521 112567888876 6775 444322 2 2
Q ss_pred CCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 664 IQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 664 g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
+..++|+++. +++++|+++++.|.++.+++
T Consensus 374 ~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 374 GAGHFRAVFL--PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp GTTBEEEECC--SCHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence 3578999765 88999999999998876654
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-13 Score=149.51 Aligned_cols=156 Identities=12% Similarity=0.001 Sum_probs=114.2
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCc-EEEcCChHHHHHHHHHHHHHHHHHhh
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGG-GVLQTTASESTLICLLAGRTEAIRKY 286 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~-GvfTsGGTeANL~AL~aAR~~~l~~~ 286 (943)
+.+.+...++.....|...+...+++..+.+|+.+.+|++.. ... .++|+|||+|+..++.+..
T Consensus 44 v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~--------~~~~v~~~~g~~~a~~~~~~~~~------- 108 (389)
T 1gd9_A 44 IKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEAD--------PKTEIMVLLGANQAFLMGLSAFL------- 108 (389)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC--------TTTSEEEESSTTHHHHHHHTTTC-------
T ss_pred HHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC--------CCCeEEEcCChHHHHHHHHHHhC-------
Confidence 445555555433333444445788999999999999896422 136 8999999999987765421
Q ss_pred cccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCC
Q psy11047 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLAL 364 (943)
Q Consensus 287 ~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGT 364 (943)
.+| -.|++++.+|+++..++...+.+++.+|.+. .+.+|+++|+++|+.+ +.+|+.+..+
T Consensus 109 ---~~g---------d~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~ 170 (389)
T 1gd9_A 109 ---KDG---------EEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSPC 170 (389)
T ss_dssp ---CTT---------CEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTT------EEEEEEESSC
T ss_pred ---CCC---------CEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcC------ceEEEEECCC
Confidence 122 2467788899998888754334788888874 4679999999988653 5566777778
Q ss_pred Ccccccc---cHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 365 PAFLVVD---SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 365 T~tGaID---pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+|.+- ++++|.+ +|++||+ |+++|.+|+++
T Consensus 171 nptG~~~~~~~l~~l~~--------------------~~~~~~~-------~li~De~~~~~ 205 (389)
T 1gd9_A 171 NPTGAVLTKKDLEEIAD--------------------FVVEHDL-------IVISDEVYEHF 205 (389)
T ss_dssp TTTCCCCCHHHHHHHHH--------------------HHHHTTC-------EEEEECTTTTC
T ss_pred CCCCcCCCHHHHHHHHH--------------------HHHHcCC-------EEEEehhhhhc
Confidence 8899885 4888888 9999999 99999999876
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-13 Score=152.24 Aligned_cols=319 Identities=9% Similarity=-0.058 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284 (943)
Q Consensus 205 ~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~ 284 (943)
+.+. +.+ ..+......|...+...+++..+.+|+.+..|++... ...++|+|||+|+..++.+..
T Consensus 59 ~~v~-~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~--------~~v~~~~g~t~a~~~~~~~~~----- 123 (409)
T 2gb3_A 59 EVFF-ERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKP--------ENVLVTNGGSEAILFSFAVIA----- 123 (409)
T ss_dssp THHH-HHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCG--------GGEEEESHHHHHHHHHHHHHC-----
T ss_pred HHHH-HHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCH--------HHEEEeCCHHHHHHHHHHHhC-----
Confidence 3444 444 5554333344444557889999999999988865321 368999999999988877531
Q ss_pred hhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEec
Q psy11047 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGL 362 (943)
Q Consensus 285 ~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTa 362 (943)
.+| -.|++++.+|.++..++...+.+++.++.+. .+.+ +++|+++|+++ +.+|+.+.
T Consensus 124 -----~~g---------d~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~------~~~v~~~~ 182 (409)
T 2gb3_A 124 -----NPG---------DEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINER------TKGIVLSN 182 (409)
T ss_dssp -----CTT---------CEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCTT------EEEEEEES
T ss_pred -----CCC---------CEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCcC------CeEEEECC
Confidence 122 2477788899999888854334788888874 3445 78888777542 56777777
Q ss_pred CCCccccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeee
Q psy11047 363 ALPAFLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVI 439 (943)
Q Consensus 363 GTT~tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcF 439 (943)
.++.+|.+ +++++|.+ +|++||+ |+++|.+|+++ .+.
T Consensus 183 p~nptG~~~~~~~l~~i~~--------------------~~~~~~~-------~li~Dea~~~~-~~~------------ 222 (409)
T 2gb3_A 183 PCNPTGVVYGKDEMRYLVE--------------------IAERHGL-------FLIVDEVYSEI-VFR------------ 222 (409)
T ss_dssp SCTTTCCCCCHHHHHHHHH--------------------HHHHTTC-------EEEEECTTTTC-BCS------------
T ss_pred CCCCCCCCcCHHHHHHHHH--------------------HHHHcCC-------EEEEECccccc-ccC------------
Confidence 77888987 45888888 9999999 99999999876 320
Q ss_pred eecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccC---cchhhhhcccCc-cccccCCCCccc
Q psy11047 440 RLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKN---SGALHRTFNVEP-LYLRHENSGLAI 515 (943)
Q Consensus 440 R~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~---~~~L~~af~~~p-~YL~~~~~g~~~ 515 (943)
|. ..+ .+.++...|.+..++||+++... ...+ ... ..+..-..
T Consensus 223 -------------------~~-~~~----~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~-----~~~~~l~~~l~~---- 269 (409)
T 2gb3_A 223 -------------------GE-FAS----ALSIESDKVVVIDSVSKKFSACGARVGCLI-----TRNEELISHAMK---- 269 (409)
T ss_dssp -------------------SC-CCC----GGGSCCTTEEEEEESTTTTTCGGGCCEEEE-----CSCHHHHHHHHH----
T ss_pred -------------------CC-CCC----ccccCCCCEEEEecchhccCCccceEEEEE-----ECcHHHHHHHHH----
Confidence 00 011 12344457999999999997321 1111 011 11100000
Q ss_pred ccCccccCCCCCcchHHHHHHHHHH--HHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCccc
Q psy11047 516 DYMHWQIPLSKRFRALKLWFVIRNF--GIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNF 593 (943)
Q Consensus 516 d~~~~tie~SRrfrALklW~tLr~~--G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~ 593 (943)
-...++ ....+..++....+ +..++.+..++
T Consensus 270 ~~~~~~-----~~~~~~~~a~~~~l~~~~~~~~~~~~~------------------------------------------ 302 (409)
T 2gb3_A 270 LAQGRL-----APPLLEQIGSVGLLNLDDSFFDFVRET------------------------------------------ 302 (409)
T ss_dssp HHHHSC-----CCCHHHHHHHHHHHTCCHHHHHHHHHH------------------------------------------
T ss_pred HHhccC-----CCCHHHHHHHHHHHhccHHHHHHHHHH------------------------------------------
Confidence 000011 11122223333333 22223222222
Q ss_pred ccccCCcHHHHHHHHHHHHHHhCCCCeEE-ecCCCccE-EEEEecCCChHHHHHHHHHhcc------CcEEEeecc-c--
Q psy11047 594 ILSYFPKFQSVRLAQKFEALVLGDPRFEI-PAARHLGM-VVIRLLGENILTEKLLKRLNSK------GRLHCVPAS-L-- 662 (943)
Q Consensus 594 ~~~~~p~~~~~~LA~~l~~~L~~~p~~eI-l~~~~l~i-V~Fr~~g~n~l~~~Ll~~L~~~------G~~~~s~t~-~-- 662 (943)
..++++++.+.|++. ++++ .. +..++ +.+++.+.+ ..++.++|.++ |. ++.+.. .
T Consensus 303 ---------~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~gi-~v~~g~~f~~ 368 (409)
T 2gb3_A 303 ---------YRERVETVLKKLEEH-GLKRFTK-PSGAFYITAELPVED--AEEFARWMLTDFNMDGETT-MVAPLRGFYL 368 (409)
T ss_dssp ---------HHHHHHHHHHHHHHT-TCCCBCC-CSBSSEEEEECSSSC--HHHHHHHHHHSCCBTTEEE-ECEEGGGGCS
T ss_pred ---------HHHHHHHHHHHHHHc-CceeeeC-CCeeEEEEEEeCCCC--HHHHHHHHHhccccccCcE-EEeCchHhCC
Confidence 234566677777666 6777 44 44444 444665332 46788888766 64 454422 2
Q ss_pred ---CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 663 ---RIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 663 ---~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
.+..++|+++. +++++|+++++.|+++.+++
T Consensus 369 ~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~ 402 (409)
T 2gb3_A 369 TPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMF 402 (409)
T ss_dssp STTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 23679999666 79999999999998887654
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.8e-14 Score=152.48 Aligned_cols=337 Identities=14% Similarity=0.023 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHhcc---CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINCL---GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTE 281 (943)
Q Consensus 205 ~silgd~L~~alN~n---~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~ 281 (943)
+..+.+.+...+... .. |...+...+++..+.+|+.+..|++... ...++|+|||+|+..++.+..
T Consensus 51 ~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~--------~~v~~t~g~t~a~~~~~~~~~-- 119 (407)
T 2zc0_A 51 RAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSP--------ENIVITIGGTGALDLLGRVLI-- 119 (407)
T ss_dssp HHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCG--------GGEEEESHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCc--------ceEEEecCHHHHHHHHHHHhc--
Confidence 344445555554432 12 4444456889999999998888864221 368999999999988877642
Q ss_pred HHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEE-EE
Q psy11047 282 AIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI-FS 360 (943)
Q Consensus 282 ~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~V-Va 360 (943)
.+| -.|++..-+|++...++...+.+++.+|.++++ +|+++|+++|+.....+..+.+| +.
T Consensus 120 --------~~g---------d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~ 181 (407)
T 2zc0_A 120 --------DPG---------DVVITENPSYINTLLAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTI 181 (407)
T ss_dssp --------CTT---------CEEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred --------CCC---------CEEEEeCCChHHHHHHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEEC
Confidence 122 236677888999888876444578888887766 99999999998422122225555 45
Q ss_pred ecCCCcccccccHH---HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcccccccccccee
Q psy11047 361 GLALPAFLVVDSYC---CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMV 437 (943)
Q Consensus 361 TaGTT~tGaIDpL~---eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~V 437 (943)
+...+.+|.+.|++ +|++ +|++||+ |+++|.+|+++ .+.
T Consensus 182 ~~~~nptG~~~~~~~l~~i~~--------------------~~~~~~~-------~li~De~~~~~-~~~---------- 223 (407)
T 2zc0_A 182 PTGQNPMGVTMSMERRKALLE--------------------IASKYDL-------LIIEDTAYNFM-RYE---------- 223 (407)
T ss_dssp CSSCTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEECTTTTS-BSS----------
T ss_pred CCCCCCCCcCCCHHHHHHHHH--------------------HHHHcCC-------EEEEECCCccc-ccC----------
Confidence 56678899998876 7777 9999999 99999999876 320
Q ss_pred eeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCc--cCcchhhhhcccCccccccCCCCccc
Q psy11047 438 VIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRV--KNSGALHRTFNVEPLYLRHENSGLAI 515 (943)
Q Consensus 438 cFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~v--r~~~~L~~af~~~p~YL~~~~~g~~~ 515 (943)
|. ..+.... +. ....+-+..++||+++. |-...+ ..+..+..-...
T Consensus 224 ---------------------~~-~~~~~~~-~~-~~~~~i~~~s~sK~~~~G~r~G~~~-----~~~~~~~~~~~~--- 271 (407)
T 2zc0_A 224 ---------------------GG-DIVPLKA-LD-NEGRVIVAGTLSKVLGTGFRIGWII-----AEGEILKKVLMQ--- 271 (407)
T ss_dssp ---------------------CS-SCCCGGG-GC-SSCCEEEEEESTTTTCTTSCCEEEE-----CCHHHHHHHHHH---
T ss_pred ---------------------CC-CCCChhh-cC-CCCCEEEEcccccccCCCcceEEEe-----cCHHHHHHHHHH---
Confidence 00 0001111 11 11223456678999981 111110 011111000000
Q ss_pred ccCccccCCCCCcchHHHHHHHHHHHHHHHH-HHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccc
Q psy11047 516 DYMHWQIPLSKRFRALKLWFVIRNFGIKGLQ-KHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFI 594 (943)
Q Consensus 516 d~~~~tie~SRrfrALklW~tLr~~G~~Gl~-~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~ 594 (943)
...++. ....+..++....+....+. +.+++. ++.
T Consensus 272 -~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------------------~~~---------------- 307 (407)
T 2zc0_A 272 -KQPIDF----CAPAISQYIALEYLKRGYFEKYHLEGA-----------------------LLG---------------- 307 (407)
T ss_dssp -HTTTTS----SSCHHHHHHHHHHHHTTHHHHHTTTTH-----------------------HHH----------------
T ss_pred -HHhhcC----CCCHHHHHHHHHHHHcCCchHHHHHHH-----------------------HHH----------------
Confidence 000111 11222222222222110111 111110 000
Q ss_pred cccCCcHHHHHHHHHHHHHHhC-CCCeEEecCCCccEEEEEecC-CChHHHHHHHHHhcc-CcEEEeecc-c----CCCc
Q psy11047 595 LSYFPKFQSVRLAQKFEALVLG-DPRFEIPAARHLGMVVIRLLG-ENILTEKLLKRLNSK-GRLHCVPAS-L----RIQG 666 (943)
Q Consensus 595 ~~~~p~~~~~~LA~~l~~~L~~-~p~~eIl~~~~l~iV~Fr~~g-~n~l~~~Ll~~L~~~-G~~~~s~t~-~----~g~~ 666 (943)
..++++++.+.|++ .|++++..+...+.+.|++.. .+ ..++.++|.++ |. ++.+.. . .+..
T Consensus 308 --------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~gi-~v~~g~~~~~~~~~~~ 376 (407)
T 2zc0_A 308 --------YKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGAD--GISFANELMEREGV-VVVPGKPFYTDESGKN 376 (407)
T ss_dssp --------HHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECSTTCC--HHHHHHHHHHHTCE-ECBCSGGGCSSSCCTT
T ss_pred --------HHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCCCCC--HHHHHHHHHHhCCe-EEECchhccCCCCCCC
Confidence 23456677777765 577777655556677888853 22 46788888888 75 444322 1 1457
Q ss_pred EEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 667 LGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 667 ~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
++|++++.. ++++|+++++.|.++.++++
T Consensus 377 ~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 405 (407)
T 2zc0_A 377 AIRLNFSRP-SKEEIPIGIKKLAKLYKEKF 405 (407)
T ss_dssp EEEEECSSS-CTTHHHHHHHHHHHHHHHHC
T ss_pred eEEEEeCCC-CHHHHHHHHHHHHHHHHHHh
Confidence 999976655 89999999999998876653
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-13 Score=145.64 Aligned_cols=298 Identities=16% Similarity=0.069 Sum_probs=182.6
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.++...++| +.+++++|.+ ..++|+|||+|+..++.+.+ + .+| -.|
T Consensus 37 ~~~~~~~l~----~~la~~~~~~------------~~~~~~~gt~al~~~~~~~~---~------~~g---------d~V 82 (393)
T 1mdo_A 37 TGPKNQELE----AAFCRLTGNQ------------YAVAVSSATAGMHIALMALG---I------GEG---------DEV 82 (393)
T ss_dssp SSHHHHHHH----HHHHHHHCCS------------EEEEESCHHHHHHHHHHHTT---C------CTT---------CEE
T ss_pred CChHHHHHH----HHHHHHhCCC------------cEEEecChHHHHHHHHHHcC---C------CCC---------CEE
Confidence 345555555 4567777764 37999999999988877531 0 122 347
Q ss_pred EecCCCchHHHHHHHHCCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 305 YCSDQAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 305 ~~S~~aHySv~KAa~LG~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+++..+|.+...++...+.+++.++++++ +.+|+++|+++|+++ +.+|+.+ +.+|.+.|+++|.+
T Consensus 83 l~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~~~---~~~G~~~~~~~i~~----- 148 (393)
T 1mdo_A 83 ITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQ------TKAIIPV---HYAGAPADLDAIYA----- 148 (393)
T ss_dssp EEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTT------EEEECCB---CGGGCCCCHHHHHH-----
T ss_pred EeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCC------ceEEEEe---CCCCCcCCHHHHHH-----
Confidence 78899999998888654458889998764 689999999998653 4555544 46899999999999
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccc
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHC 463 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~ 463 (943)
+|++||+ ++++|++|+.+..+ ..
T Consensus 149 ---------------l~~~~~~-------~li~D~a~~~g~~~-----------------------------------~~ 171 (393)
T 1mdo_A 149 ---------------LGERYGI-------PVIEDAAHATGTSY-----------------------------------KG 171 (393)
T ss_dssp ---------------HHHHHTC-------CBCEECTTCTTCEE-----------------------------------TT
T ss_pred ---------------HHHHcCC-------eEEEECccccCCeE-----------------------------------CC
Confidence 9999999 99999999854121 00
Q ss_pred cchhhhhcCCCCeeEEEEcCC--CccC-------c-cCcchhhhhcccCccccccCCCCcccc----cCcccc----CCC
Q psy11047 464 VPASLRIQGLGRAQNFTIVPS--SLLR-------V-KNSGALHRTFNVEPLYLRHENSGLAID----YMHWQI----PLS 525 (943)
Q Consensus 464 p~~r~~l~Gie~ADSItiDpH--K~L~-------v-r~~~~L~~af~~~p~YL~~~~~g~~~d----~~~~ti----e~S 525 (943)
.. + +. .|.+++++| |++. + +++... +.+.. +..........+ ...+.+ .+.
T Consensus 172 ~~----~-~~--~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~-~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 240 (393)
T 1mdo_A 172 RH----I-GA--RGTAIFSFHAIKNITCAEGGIVVTDNPQFA-DKLRS---LKFHGLGVDAWDRQSGGRAPQAEVLAPGY 240 (393)
T ss_dssp EE----T-TS--SSEEEEECCTTSSSCSSSCEEEEESCHHHH-HHHHH---HTBTTEECC-----------CCEESSCCC
T ss_pred ee----c-CC--CCeEEEeCCCCCccccccceEEEeCCHHHH-HHHHH---HHhcCCcccchhhhcccccccccccccCc
Confidence 00 1 11 689999999 9987 1 222211 11110 000000000000 000111 111
Q ss_pred -CCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHH
Q psy11047 526 -KRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSV 604 (943)
Q Consensus 526 -RrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~ 604 (943)
-+..++...+.+. ..+++.+.+++ ..
T Consensus 241 ~~~~~~~~~a~~~~--~l~~~~~~~~~---------------------------------------------------~~ 267 (393)
T 1mdo_A 241 KYNLPDLNAAIALA--QLQKLDALNAR---------------------------------------------------RA 267 (393)
T ss_dssp BCCCCHHHHHHHHH--HHHTHHHHHHH---------------------------------------------------HH
T ss_pred cCCCCHHHHHHHHH--HHHHHHHHHHH---------------------------------------------------HH
Confidence 1223332222222 23344443333 34
Q ss_pred HHHHHHHHHHhCCCCeEEecCC------CccEEEEEec----CCChHHHHHHHHHhccCcEEEeecc-------------
Q psy11047 605 RLAQKFEALVLGDPRFEIPAAR------HLGMVVIRLL----GENILTEKLLKRLNSKGRLHCVPAS------------- 661 (943)
Q Consensus 605 ~LA~~l~~~L~~~p~~eIl~~~------~l~iV~Fr~~----g~n~l~~~Ll~~L~~~G~~~~s~t~------------- 661 (943)
++++++.+.|.+.+ +++...+ ...++.|+++ +.+ ..++.++|.++|.. +.+..
T Consensus 268 ~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~l~~~gi~-v~~~~~~~~~~~~~~~~~ 343 (393)
T 1mdo_A 268 AIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVDEARCGIT--RDALMASLKTKGIG-TGLHFRAAHTQKYYRERF 343 (393)
T ss_dssp HHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECCHHHHSSC--HHHHHHHHHHTTBC-CBCCCCCGGGSHHHHHHS
T ss_pred HHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEecccccccC--HHHHHHHHHhCCCC-cccccCccccChhhhccC
Confidence 57888888898887 8876432 2346788876 232 56788888888853 32210
Q ss_pred ----cC-----CCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 662 ----LR-----IQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 662 ----~~-----g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
+. ...++|+.+++.+|++||+++++.|+++.+..
T Consensus 344 ~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 344 PTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp TTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred CccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 00 13479999999999999999999998875543
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-15 Score=169.49 Aligned_cols=288 Identities=12% Similarity=-0.024 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
....++.+++++ +|.++ ..++|+|||+||..++.++. .+| ..|+++..+
T Consensus 57 ~~~~~~~~~la~-~g~~~-----------~v~~~~G~t~a~~~~~~a~~----------~~g---------d~Vlv~~~~ 105 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDYD-----------GYFLVNGTTSGILSVIQSFS----------QKK---------GDILMARNV 105 (446)
T ss_dssp SHHHHHHHHHCS-CTTEE-----------EEEESSHHHHHHHHHHHTTT----------TSS---------SCEEECTTC
T ss_pred hHHHHHHHHHHh-cCCCc-----------eEEEeCCHHHHHHHHHHHhc----------CCC---------CEEEEecCc
Confidence 344567788999 98863 46899999999998887641 122 247788999
Q ss_pred chHHHHHHHHCCccEEEEec--CCC----CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 311 HSSVEKAGLIGLVNMRYIES--DDK----LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 311 HySv~KAa~LG~~~v~~Vp~--D~~----grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
|.|+..++.+.+..++.+++ +++ +.+|+++| +.. .+.+|+.+. .|.+|.+.|+++|.+
T Consensus 106 h~s~~~~~~~~G~~~~~v~~~~~~~~~~~~~~d~~~l---~~~------~~~~v~~~~-~n~~G~~~~l~~I~~------ 169 (446)
T 2x3l_A 106 HKSVLHALDISQQEGHFIETHQSPLTNHYNKVNLSRL---NND------GHKLVVLTY-PNYYGETFNVEEVIK------ 169 (446)
T ss_dssp CHHHHHHHHHHTCCEEECEEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCCHHHHHH------
T ss_pred cHHHHHHHHHcCCeEEEEeCeeccccCcCCCCCHHHH---cCC------CceEEEEEC-CCCCeEecCHHHHHH------
Confidence 99999998653446778877 665 67899887 222 256777777 666999999999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccccc
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV 464 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p 464 (943)
+|++||+ |+|+|+||++...|. +. +
T Consensus 170 --------------l~~~~~~-------~livDea~~~~~~f~-------------------------------~~---~ 194 (446)
T 2x3l_A 170 --------------SLHQLNI-------PVLIDEAHGAHFGLQ-------------------------------GF---P 194 (446)
T ss_dssp --------------HHHHTTC-------CEEEECTTCTTTTST-------------------------------TS---C
T ss_pred --------------HHHhcCC-------eEEEcchhhhhhccC-------------------------------CC---C
Confidence 9999999 999999998741220 00 0
Q ss_pred chhhhhcCCCCeeEEEEcCCCccC-ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcch-HHHHHHHHHHHH
Q psy11047 465 PASLRIQGLGRAQNFTIVPSSLLR-VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRA-LKLWFVIRNFGI 542 (943)
Q Consensus 465 ~~r~~l~Gie~ADSItiDpHK~L~-vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrA-LklW~tLr~~G~ 542 (943)
... . . ..+|.++.++||+++ ....+.+. ....++.... ..........++....+ ..++.+++.+..
T Consensus 195 -~~~-~-~-~g~Di~~~S~~K~l~~~~g~g~l~----~~~~~i~~~~---~~~~~~~~~~~s~~~~~~aal~~a~~~l~~ 263 (446)
T 2x3l_A 195 -DST-L-N-YQADYVVQSFHKTLPALTMGSVLY----IHKNAPYREN---IIEYLSYFQTSSPSYLIMASLESAAQFYKT 263 (446)
T ss_dssp -CCG-G-G-GTCSEEEECHHHHSSSCTTCEEEE----EETTCTTHHH---HHHHHHHHSCSSCCHHHHHHHHHHHHHHHH
T ss_pred -CCh-H-H-cCCCEEEECCccccccccccEEEE----EcCCcCCHHH---HHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 000 0 0 137999999999776 21211110 0011110000 00000000011111111 112222222221
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEE
Q psy11047 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI 622 (943)
Q Consensus 543 ~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eI 622 (943)
.|..+..++ ..++++++.+. ++++
T Consensus 264 ~g~~~~~~~---------------------------------------------------~~~l~~~l~~~-----g~~~ 287 (446)
T 2x3l_A 264 YDSTLFFAK---------------------------------------------------RAQLIECLENK-----GFEM 287 (446)
T ss_dssp CCCHHHHHH---------------------------------------------------HHHHHHHHHHH-----TCEE
T ss_pred hCHHHHHHH---------------------------------------------------HHHHHHHHHHc-----CCEE
Confidence 111111111 24456666554 6777
Q ss_pred ecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 623 PAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 623 l~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+.+...+.+.|++.+.+ ...+.+.|.++|. .+.. .+...+|++++..+|++++ ++++.|+++.+.
T Consensus 288 ~~~~~~~~l~i~~~~~~--~~~l~~~L~~~GI-~v~~---~g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 288 LQVDDPLKLLIKYEGFT--GHDIQNWFMNAHI-YLEL---ADDYQALAILPLWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp EECSSTTEEEEECTTSC--HHHHHHHHHHTTE-EESE---ECSSCEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred CcCCCCeEEEEEeCCcC--HHHHHHHHHHCCC-EEEe---cCCCEEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence 76544446778876443 4678888888875 4431 2456899998888899999 999999887543
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7e-13 Score=146.20 Aligned_cols=129 Identities=9% Similarity=-0.028 Sum_probs=98.5
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
+|...++|. .+++++|.+ ..++|+|||+|+..++.+.+ . .+| -.|+
T Consensus 31 g~~~~~l~~----~la~~~~~~------------~v~~~~ggt~al~~~~~~l~---~------~~g---------d~Vl 76 (394)
T 1o69_A 31 GEFVNRFEQ----SVKDYSKSE------------NALALNSATAALHLALRVAG---V------KQD---------DIVL 76 (394)
T ss_dssp THHHHHHHH----HHHHHHCCS------------EEEEESCHHHHHHHHHHHTT---C------CTT---------CEEE
T ss_pred ChHHHHHHH----HHHHHhCCC------------cEEEeCCHHHHHHHHHHHcC---C------CCC---------CEEE
Confidence 355555554 556667762 47999999999988877531 0 122 2477
Q ss_pred ecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccc
Q psy11047 306 CSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGL 385 (943)
Q Consensus 306 ~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~ 385 (943)
++..+|.+...++...+..++.+++++++.+|+++|+++|++.. + .+.+|+.+. .+|...|+++|.+
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~--~-~~~~v~~~~---~~G~~~~l~~i~~------- 143 (394)
T 1o69_A 77 ASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECE--K-KPKALILTH---LYGNAAKMDEIVE------- 143 (394)
T ss_dssp EESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCS--S-CCCEEEEEC---GGGCCCCHHHHHH-------
T ss_pred ECCCccHHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhccc--C-CceEEEEEC---CCCChhhHHHHHH-------
Confidence 88999999988886544588899998889999999999998631 0 144555553 6899999999999
Q ss_pred ccccccccCchHHHHHHcCCCCCccchhhhHHhhhc
Q psy11047 386 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 421 (943)
Q Consensus 386 ~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~G 421 (943)
+|+++|+ ++++|+||+
T Consensus 144 -------------l~~~~~~-------~li~Dea~~ 159 (394)
T 1o69_A 144 -------------ICKENDI-------VLIEDAAEA 159 (394)
T ss_dssp -------------HHHHTTC-------EEEEECTTC
T ss_pred -------------HHHHcCC-------EEEEECcCc
Confidence 9999999 999999998
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-12 Score=143.76 Aligned_cols=299 Identities=11% Similarity=0.040 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
....++.+.+++++|.+ . .+++++||+|+..++.+.. .+| -.|+++...
T Consensus 90 ~~~~~l~~~la~~~g~~-~-----------~i~~~sGs~a~~~~~~~~~----------~~g---------d~v~~~~~~ 138 (401)
T 1fc4_A 90 DSHKELEQKLAAFLGME-D-----------AILYSSCFDANGGLFETLL----------GAE---------DAIISDALN 138 (401)
T ss_dssp HHHHHHHHHHHHHHTCS-E-----------EEEESCHHHHHHTTHHHHC----------CTT---------CEEEEETTC
T ss_pred HHHHHHHHHHHHHhCCC-c-----------EEEeCChHHHHHHHHHHHc----------CCC---------CEEEEcchh
Confidence 44456677788888886 2 4677888999987765431 122 257778889
Q ss_pred chHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccc
Q psy11047 311 HSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 311 HySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i 390 (943)
|.++..++...+..++.++. +|+++|++.|+....+|..+.+|+.+...+.+|.+.|+++|.+
T Consensus 139 ~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~------------ 201 (401)
T 1fc4_A 139 HASIIDGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCD------------ 201 (401)
T ss_dssp CHHHHHHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHH------------
T ss_pred HHHHHHHHHHcCCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHH------------
Confidence 99988887654456777763 5799999999864433334678888888889999999999999
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhc-CCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhh
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVL-GDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR 469 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~G-G~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~ 469 (943)
+|++||+ ++++|.+|+ ++ .. + +|. ... .
T Consensus 202 --------l~~~~~~-------~li~De~~~~g~-~~--~----------------------------~g~----~~~-~ 230 (401)
T 1fc4_A 202 --------LADKYDA-------LVMVDDSHAVGF-VG--E----------------------------NGR----GSH-E 230 (401)
T ss_dssp --------HHHHTTE-------EEEEECTTTTTT-SS--T----------------------------TSC----CHH-H
T ss_pred --------HHHHcCC-------EEEEECcccccc-cC--C----------------------------CCC----ccH-H
Confidence 9999999 999999996 54 11 0 000 000 0
Q ss_pred hcCC-CCeeEEEEcCCCcc-CccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHH-HHH
Q psy11047 470 IQGL-GRAQNFTIVPSSLL-RVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIK-GLQ 546 (943)
Q Consensus 470 l~Gi-e~ADSItiDpHK~L-~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~-Gl~ 546 (943)
+.++ ..+|.++.++||++ +.. .+.+. .++..+..-... . ..+.... ....+.++.....+... ...
T Consensus 231 ~~~~~~~~di~~~s~sK~~~~~~-gG~~~----~~~~~~~~l~~~---~-~~~~~~~--~~~~~~~~a~~~~l~~~~~~~ 299 (401)
T 1fc4_A 231 YCDVMGRVDIITGTLGKALGGAS-GGYTA----ARKEVVEWLRQR---S-RPYLFSN--SLAPAIVAASIKVLEMVEAGS 299 (401)
T ss_dssp HTTCTTCCSEEEEESSSTTCSSS-CEEEE----ECHHHHHHHHHH---C-HHHHHSC--CCCHHHHHHHHHHHHHHHTCH
T ss_pred HcCCCcCCcEEEecchhhccCCC-CEEEE----cCHHHHHHHHHh---C-cCceeCC--CCCHHHHHHHHHHHHHHhcCH
Confidence 1122 24699999999999 422 12110 011111000000 0 0010001 11122222222222110 011
Q ss_pred HHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC
Q psy11047 547 KHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR 626 (943)
Q Consensus 547 ~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~ 626 (943)
+..++ ..++++++.+.|++. ++++. +.
T Consensus 300 ~~~~~---------------------------------------------------~~~~~~~l~~~L~~~-g~~~~-~~ 326 (401)
T 1fc4_A 300 ELRDR---------------------------------------------------LWANARQFREQMSAA-GFTLA-GA 326 (401)
T ss_dssp HHHHH---------------------------------------------------HHHHHHHHHHHHHHT-TCCBC-CS
T ss_pred HHHHH---------------------------------------------------HHHHHHHHHHHHHHc-CCccc-CC
Confidence 11111 245567777777766 67766 56
Q ss_pred CccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc----CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 627 HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL----RIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 627 ~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~----~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
..+++.|++.+ ......+.++|.++|. ++.+... .+..++|++++..+++++++++++.|+++.++
T Consensus 327 ~~~~~~~~~~~-~~~~~~l~~~l~~~gi-~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 396 (401)
T 1fc4_A 327 DHAIIPVMLGD-AVVAQKFARELQKEGI-YVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQ 396 (401)
T ss_dssp SSSEEEEEEEC-HHHHHHHHHHHHHTTE-ECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCC-hHHHHHHHHHHHHCCc-EEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 78888888863 1235678888888875 4443322 13468999998889999999999999887553
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.9e-13 Score=144.94 Aligned_cols=156 Identities=8% Similarity=-0.015 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
++.+. +.+...+......|.. ...+++..+.+++++++|.+.. ....++|+|||+|+..++.+..
T Consensus 47 ~~~v~-~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~--------~~~v~~~~g~~~a~~~~~~~~~---- 111 (391)
T 4dq6_A 47 APCII-DSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIK--------SEWLIYSPGVIPAISLLINELT---- 111 (391)
T ss_dssp CHHHH-HHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCC--------GGGEEEESCHHHHHHHHHHHHS----
T ss_pred CHHHH-HHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCc--------HHHeEEcCChHHHHHHHHHHhC----
Confidence 34444 4444444433333332 3478889999999999995422 1268999999999988876531
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC----CCCCcCHHHHHHHHHHhhccCCCcEEEE
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD----DKLSLRGDKLIEAIERDKKKHLIPFFIF 359 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D----~~grmD~daLe~aI~~d~~kG~~P~~VV 359 (943)
.+| -.|+++..+|.+...++..-+.+++.+|.+ .++.+|+++|+++|+. +.+|+
T Consensus 112 ------~~g---------d~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~v~ 169 (391)
T 4dq6_A 112 ------KAN---------DKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-------VKLFI 169 (391)
T ss_dssp ------CTT---------CEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-------EEEEE
T ss_pred ------CCC---------CEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-------CCEEE
Confidence 122 247778899999988886444578888876 3446999999998865 45677
Q ss_pred EecCCCccccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 360 SGLALPAFLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 360 aTaGTT~tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+...+.+|.+ +++++|.+ +|++||+ ++++|.+|+++
T Consensus 170 i~~p~nptG~~~~~~~l~~i~~--------------------~~~~~~~-------~li~De~~~~~ 209 (391)
T 4dq6_A 170 LCNPHNPVGRVWTKDELKKLGD--------------------ICLKHNV-------KIISDEIHSDI 209 (391)
T ss_dssp EESSBTTTTBCCCHHHHHHHHH--------------------HHHHTTC-------EEEEECTTTTC
T ss_pred EECCCCCCCcCcCHHHHHHHHH--------------------HHHHcCC-------EEEeecccccc
Confidence 77778889999 67888888 9999999 99999999876
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-12 Score=142.00 Aligned_cols=137 Identities=12% Similarity=0.037 Sum_probs=101.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
+..++...++|. .+++++|.+ ..+++++||+||..++.+++... ..++ .+.-
T Consensus 30 ~~~~~~~~~l~~----~la~~~~~~------------~~i~~~sGt~a~~~al~~~~~~~-------~~~~-----~~g~ 81 (390)
T 3b8x_A 30 FTMGEYVKQYET----QFAKTFGSK------------YAVMVSSGSTANLLMIAALFFTK-------KPRL-----KKGD 81 (390)
T ss_dssp CSSCHHHHHHHH----HHHHHHTCS------------EEEEESCHHHHHHHHHHHTTSSS-------SCSC-----CTTC
T ss_pred CCCChHHHHHHH----HHHHHHCCC------------cEEEECCHHHHHHHHHHHHHhhh-------hcCC-----CCcC
Confidence 344566666665 557777764 36899999999998887653100 0011 1223
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
.|+++..+|.++..++...+..++.++++.+ +.+|+++|+++|+++ +.+|+.+ +.+|...|+++|.+
T Consensus 82 ~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~---~~~g~~~~~~~i~~--- 149 (390)
T 3b8x_A 82 EIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDS------TKAILTV---NLLGNPNNFDEINK--- 149 (390)
T ss_dssp EEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTT------EEEEEEE---CGGGCCCCHHHHHH---
T ss_pred EEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCcC------CeEEEEE---CCccChhhHHHHHH---
Confidence 5788899999999988654457888998865 999999999998653 4556654 35788899999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++|+|+|++.+
T Consensus 150 -----------------l~~~~~~-------~li~D~a~~~g 167 (390)
T 3b8x_A 150 -----------------IIGGRDI-------ILLEDNCESMG 167 (390)
T ss_dssp -----------------HHTTSCC-------EEEEECTTCTT
T ss_pred -----------------HHHHcCC-------EEEEECcCccc
Confidence 9999999 99999999844
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=148.63 Aligned_cols=301 Identities=11% Similarity=0.007 Sum_probs=182.5
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCCh-HHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTA-SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGG-TeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
++....+...+.+++++++|.++. ...+||+|+ |+|+..++.+.- .+| .+..+|
T Consensus 43 ~~~~~~~~~~l~~~la~~~g~~~~---------~~v~~~~g~gt~al~~~~~~l~----------~~~------~~g~~v 97 (360)
T 1w23_A 43 SQSYEEVHEQAQNLLRELLQIPND---------YQILFLQGGASLQFTMLPMNLL----------TKG------TIGNYV 97 (360)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTT---------EEEEEESSHHHHHHHHHHHHHC----------CTT------CEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC---------ceEEEECCcchHHHHHHHHHhc----------CCC------CcccEE
Confidence 666777778899999999999632 257899998 999877765421 111 012357
Q ss_pred EecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHH-HHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 305 YCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIE-AIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 305 ~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~-aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
+++..+|++...+...| +++.++++. +|.+|+++|++ +|+.+ +.+|+.+..++.+|.+-| +|
T Consensus 98 i~~~~~~~~~~~~~~~g--~~~~v~~~~~~~~~d~~~l~~~~i~~~------~k~v~~~~~~nptG~~~~--~i------ 161 (360)
T 1w23_A 98 LTGSWSEKALKEAKLLG--ETHIAASTKANSYQSIPDFSEFQLNEN------DAYLHITSNNTIYGTQYQ--NF------ 161 (360)
T ss_dssp ECSHHHHHHHHHHHTTS--EEEEEEECGGGTSCSCCCGGGCCCCTT------EEEEEEESEETTTTEECS--SC------
T ss_pred EecchhHHHHHHHHHhC--CeEEeecccccCcCCccchHhhccCCC------CCEEEEeCCCCCcceecc--cc------
Confidence 78888888854443456 888999875 77899999887 76432 678888888889999855 33
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+++||+ |+++|++++.+ .. .
T Consensus 162 -----------------~~~~~~-------~li~D~a~~~~-~~-----------------------------------~ 181 (360)
T 1w23_A 162 -----------------PEINHA-------PLIADMSSDIL-SR-----------------------------------P 181 (360)
T ss_dssp -----------------CCCCSS-------CEEEECTTTTT-SS-----------------------------------C
T ss_pred -----------------cccCCc-------eEEEechhhcC-CC-----------------------------------C
Confidence 336999 99999999765 21 0
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCcccccc--CCCCcccccCc---ccc-CCCCC-cchHHHHH
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRH--ENSGLAIDYMH---WQI-PLSKR-FRALKLWF 535 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~--~~~g~~~d~~~---~ti-e~SRr-frALklW~ 535 (943)
. . +. ..|.++.++||+++...-+.+. ..+..+.. ...+...++.. .+. .++-. +....+..
T Consensus 182 ~-~----~~---~~di~~~s~sK~~~~~G~G~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (360)
T 1w23_A 182 L-K----VN---QFGMIYAGAQKNLGPSGVTVVI----VKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRN 249 (360)
T ss_dssp C-C----GG---GCSEEEEETTTTTSCTTCEEEE----EEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHH
T ss_pred c-C----cc---cCCEEEEEcccccCCCCcEEEE----EcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHH
Confidence 1 1 11 1278999999998833211110 00001000 00000000000 000 01111 11122233
Q ss_pred HHHHHHHH-HHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHH
Q psy11047 536 VIRNFGIK-GLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 614 (943)
Q Consensus 536 tLr~~G~~-Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L 614 (943)
+++.+... ++.+..++ ..++++++.+.|
T Consensus 250 al~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~l~~~L 278 (360)
T 1w23_A 250 VLDWIKDLGGAEAIAKQ---------------------------------------------------NEEKAKIIYDTI 278 (360)
T ss_dssp HHHHHHHTTHHHHHHHH---------------------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHH---------------------------------------------------HHHHHHHHHHHH
Confidence 33333222 33333333 345778888888
Q ss_pred hCCCCe-EEec-C-CCcc-EEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHH
Q psy11047 615 LGDPRF-EIPA-A-RHLG-MVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRN 690 (943)
Q Consensus 615 ~~~p~~-eIl~-~-~~l~-iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~ 690 (943)
++.+++ .... + ...+ ++.|++++. ....++.++|.++|.. +.+.. ....++|++++..+++++++++++.|++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~-~~~~~-~~~~~iRis~~~~~~~~~i~~~~~~l~~ 355 (360)
T 1w23_A 279 DESNGFYVGHAEKGSRSLMNVTFNLRNE-ELNQQFLAKAKEQGFV-GLNGH-RSVGGCRASIYNAVPIDACIALRELMIQ 355 (360)
T ss_dssp HTTTTSSEESSCGGGBCSSEEEEECSSH-HHHHHHHHHHHHTTEE-SCBCC-TTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHccCcccccCCchhccCcEEEEEcCCC-ccHHHHHHHHHHCCee-eecCC-CCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 888765 5542 2 2345 888988642 2346788888888853 43321 1246899999999999999999999987
Q ss_pred HHH
Q psy11047 691 TAT 693 (943)
Q Consensus 691 ~~~ 693 (943)
+.+
T Consensus 356 ~~~ 358 (360)
T 1w23_A 356 FKE 358 (360)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.3e-13 Score=148.18 Aligned_cols=158 Identities=8% Similarity=-0.081 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
+|.++ +.+...+......|... ..+++..+.+|+++.+|++... ...+||+|||+||..++.+++
T Consensus 76 ~~~v~-~a~~~~~~~~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~--------~~v~~~~g~~ea~~~a~~~~~---- 140 (421)
T 3l8a_A 76 VPEIK-EAIINYGREHIFGYNYF--NDDLYQAVIDWERKEHDYAVVK--------EDILFIDGVVPAISIALQAFS---- 140 (421)
T ss_dssp CHHHH-HHHHHHHHHCCSSCBCC--CHHHHHHHHHHHHHHHCCCCCG--------GGEEEESCHHHHHHHHHHHHS----
T ss_pred CHHHH-HHHHHHHhcCCcCCCCC--CHHHHHHHHHHHHHHhCCCCCH--------HHEEEcCCHHHHHHHHHHHhc----
Confidence 44444 44444444333333332 3788899999999999965321 368999999999998887642
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC---CCCCcCHHHHHHHHHHhhccCCCcEEEEE
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD---DKLSLRGDKLIEAIERDKKKHLIPFFIFS 360 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D---~~grmD~daLe~aI~~d~~kG~~P~~VVa 360 (943)
.+| -.|++...+|+++..++...+.+++.+|.+ ..+.+|+++|+++|+.. .+.+|+.
T Consensus 141 ------~~g---------d~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~-----~~~~vil 200 (421)
T 3l8a_A 141 ------EKG---------DAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDN-----NVKIYLL 200 (421)
T ss_dssp ------CTE---------EEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHT-----TEEEEEE
T ss_pred ------CCC---------CEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhcc-----CCeEEEE
Confidence 122 246777889999888876444577888864 34478999999999842 1567777
Q ss_pred ecCCCccccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 361 GLALPAFLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 361 TaGTT~tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+...+.+|.+ +++++|++ +|++||+ ++++|.+|+++
T Consensus 201 ~~p~nptG~~~~~~~l~~l~~--------------------l~~~~~~-------~li~De~~~~~ 239 (421)
T 3l8a_A 201 CSPHNPGGRVWDNDDLIKIAE--------------------LCKKHGV-------ILVSDEIHQDL 239 (421)
T ss_dssp ESSBTTTTBCCCHHHHHHHHH--------------------HHHHHTC-------EEEEECTTTTC
T ss_pred CCCCCCCCCcCCHHHHHHHHH--------------------HHHHcCC-------EEEEEcccccc
Confidence 7788889988 77899998 9999999 99999999876
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-12 Score=145.30 Aligned_cols=146 Identities=8% Similarity=-0.017 Sum_probs=105.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|.......+++..+.+|+.+..|++-. ....++|+|||+|+..++.+... ..+| .+.
T Consensus 78 y~~~~g~~~lr~~la~~~~~~~g~~~~--------~~~i~~t~g~t~al~~~~~~l~~--------~~~g-------d~~ 134 (437)
T 3g0t_A 78 YPNLDGLPELKQEASRFAKLFVNIDIP--------ARACVPTVGSMQGCFVSFLVANR--------THKN-------REY 134 (437)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCCCC--------GGGEEEESHHHHHHHHHHHHHTT--------SCTT-------CSC
T ss_pred CCCCCChHHHHHHHHHHHHHhhCCCCC--------cccEEEeCCHHHHHHHHHHHHhc--------CCCC-------Ccc
Confidence 333334578899999999988887532 13689999999999888765320 0122 101
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~ 378 (943)
.|+++.-+|.++..++..-+.+++.++.++ .+.+|+++|+++|+.. .+.+|+.+...+.+|.+-| +++|++
T Consensus 135 ~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~i~~ 209 (437)
T 3g0t_A 135 GTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTG-----QFCSIIYSNPNNPTWQCMTDEELRIIGE 209 (437)
T ss_dssp CEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTT-----CCCEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcC-----CceEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence 366778899999888853334788888864 4479999999999432 1556666777888998876 666777
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|++|+.+
T Consensus 210 --------------------~a~~~~~-------~li~De~~~~~ 227 (437)
T 3g0t_A 210 --------------------LATKHDV-------IVIEDLAYFGM 227 (437)
T ss_dssp --------------------HHHHTTC-------EEEEECTTTTC
T ss_pred --------------------HHHHCCc-------EEEEEcchhhc
Confidence 9999999 99999999875
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-12 Score=139.77 Aligned_cols=286 Identities=9% Similarity=-0.032 Sum_probs=182.0
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
..+.+++++++|.+.+ ..++|+|||+|+..++.+.. .+| -.|+++.-+|.+
T Consensus 70 ~~lr~~la~~~~~~~~----------~v~~~~g~t~a~~~~~~~~~----------~~g---------d~vl~~~~~~~~ 120 (363)
T 3ffh_A 70 SSLRKEVADFYQLEEE----------ELIFTAGVDELIELLTRVLL----------DTT---------TNTVMATPTFVQ 120 (363)
T ss_dssp HHHHHHHHHHHTCCGG----------GEEEESSHHHHHHHHHHHHC----------STT---------CEEEEEESSCHH
T ss_pred HHHHHHHHHHhCCChh----------hEEEeCCHHHHHHHHHHHHc----------cCC---------CEEEEcCCChHH
Confidence 3566778888887654 68999999999988776531 122 246677789999
Q ss_pred HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 393 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~ 393 (943)
+..++...+.+++.++.+.++.+|+++|+++++.+ +.+|+.+...+.+|.+-|++++.+
T Consensus 121 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~~~~l~~--------------- 179 (363)
T 3ffh_A 121 YRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDEK------TTIVWICNPNNPTGNYIELADIQA--------------- 179 (363)
T ss_dssp HHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH---------------
T ss_pred HHHHHHHcCCEEEEecCCCCCCcCHHHHHHhcccC------CCEEEEeCCCCCcCCCcCHHHHHH---------------
Confidence 88888543448899999888999999999998653 667777888899999999999988
Q ss_pred CchHHHHHHc--CCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhc
Q psy11047 394 TNFPNFILSY--FPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQ 471 (943)
Q Consensus 394 RrfR~iar~~--Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~ 471 (943)
+++.+ |+ ++++|++|+++ .+. . ..+. ....
T Consensus 180 -----l~~~~~~~~-------~li~De~~~~~-~~~--~-------------------------------~~~~-~~~~- 211 (363)
T 3ffh_A 180 -----FLDRVPSDV-------LVVLDEAYIEY-VTP--Q-------------------------------PEKH-EKLV- 211 (363)
T ss_dssp -----HHTTSCTTS-------EEEEECTTGGG-CSS--C-------------------------------CCCC-GGGG-
T ss_pred -----HHHhCCCCc-------EEEEeCchHhh-cCc--c-------------------------------ccCH-HHHh-
Confidence 87777 99 99999999865 210 0 0000 0001
Q ss_pred CCCCeeEEEEcCCCccCccC---cchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH-HHHHH
Q psy11047 472 GLGRAQNFTIVPSSLLRVKN---SGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI-KGLQK 547 (943)
Q Consensus 472 Gie~ADSItiDpHK~L~vr~---~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~-~Gl~~ 547 (943)
+...-+-+..+++|+++... ...+ .++..+..-... ...| ....+..++....+.. +.+.+
T Consensus 212 ~~~~~~i~~~s~sK~~g~~G~r~G~~~-----~~~~~~~~l~~~----~~~~------~~~~~~~~~~~~~l~~~~~~~~ 276 (363)
T 3ffh_A 212 RTYKNLIITRTFSKIYGLASARVGYGI-----ADKEIIRQLNIV----RPPF------NTTSIGQKLAIEAIKDQAFIGE 276 (363)
T ss_dssp GTCTTEEEEEESSSTTCCSSCCCEEEE-----ECHHHHHHHHHT----CCSC------CCBHHHHHHHHHHHHCHHHHHH
T ss_pred hcCCCEEEEeechhhhcCchhceeeee-----cCHHHHHHHHHh----CCCC------CCCHHHHHHHHHHhcCHHHHHH
Confidence 11123456778899987322 1111 011111000000 0001 1223333434433321 11122
Q ss_pred HHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCC
Q psy11047 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 627 (943)
Q Consensus 548 ~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~ 627 (943)
..++ ..++++++.+.|.+.+++++. ++.
T Consensus 277 ~~~~---------------------------------------------------~~~~~~~l~~~l~~~~g~~~~-~~~ 304 (363)
T 3ffh_A 277 CRTS---------------------------------------------------NANGIKQYEAFAKRFEKVKLY-PAN 304 (363)
T ss_dssp HHHH---------------------------------------------------HHHHHHHHHHHHHHCTTCEEC-CCC
T ss_pred HHHH---------------------------------------------------HHHHHHHHHHHHhhCCCceEC-CCC
Confidence 1111 245677788888887888876 456
Q ss_pred ccEEEEEecCCChHHHHHHHHHhccCcEEEeecc-cCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS-LRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~-~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
.+.+.+++.. ...++.++|.++|. ++.+.. .....++|++++ +++|++++++.|+++
T Consensus 305 ~~~~~~~~~~---~~~~~~~~l~~~gi-~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 305 GNFVLIDLGI---EAGTIFSYLEKNGY-ITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp SSEEEEECSS---CHHHHHHHHHHTTE-ECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCC---CHHHHHHHHHHCCe-EEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHh
Confidence 7788888864 25678888888875 444432 223679999765 899999999998864
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-13 Score=146.61 Aligned_cols=156 Identities=8% Similarity=-0.092 Sum_probs=115.8
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+.+.+...+......|...+...+++..+.+|+.+..|++-. ....++|+|||+|+..++.+..
T Consensus 59 v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~--------~~~v~~~~g~t~al~~~~~~l~-------- 122 (389)
T 1o4s_A 59 VVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDIS--------PDQVVVTNGAKQALFNAFMALL-------- 122 (389)
T ss_dssp HHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCC--------GGGEEEESHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC--------HHHEEEecCHHHHHHHHHHHhC--------
Confidence 445555555433334444456788999999999998887421 0368999999999988876531
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
.+| -.|++++.+|.++..++...+.+++.+|.+. .+.+|+++|+++|+.+ +.+|+.+...+
T Consensus 123 --~~g---------d~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~n 185 (389)
T 1o4s_A 123 --DPG---------DEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK------TKAVLINSPNN 185 (389)
T ss_dssp --CTT---------CEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTT------EEEEEEESSCT
T ss_pred --CCC---------CEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccC------ceEEEEcCCCC
Confidence 122 2467778899998888865445788898874 5689999999988653 55667777788
Q ss_pred ccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 366 AFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 366 ~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+|.+-| +++|.+ +|++||+ ++++|.+|+.+
T Consensus 186 ptG~~~~~~~l~~l~~--------------------~~~~~~~-------~li~Dea~~~~ 219 (389)
T 1o4s_A 186 PTGVVYRREFLEGLVR--------------------LAKKRNF-------YIISDEVYDSL 219 (389)
T ss_dssp TTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEECTTTTS
T ss_pred CCCCCCCHHHHHHHHH--------------------HHHHcCC-------EEEEEcccccc
Confidence 8999855 888888 9999999 99999999876
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-12 Score=141.46 Aligned_cols=284 Identities=9% Similarity=0.005 Sum_probs=177.1
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+++++++|.++. ...+||+|||+|+..++.+.. .+| -.|+++..+|.++
T Consensus 71 ~l~~~la~~~g~~~~---------~~i~~~~g~t~a~~~~~~~~~----------~~g---------d~Vl~~~~~~~~~ 122 (367)
T 3euc_A 71 ALRAKLKEVMQVPAG---------MEVLLGNGSDEIISMLALAAA----------RPG---------AKVMAPVPGFVMY 122 (367)
T ss_dssp HHHHHHHHHHTCCTT---------CEEEEEEHHHHHHHHHHHHTC----------CTT---------CEEEEEESCSCCS
T ss_pred HHHHHHHHHhCCCCc---------ceEEEcCCHHHHHHHHHHHHc----------CCC---------CEEEEcCCCHHHH
Confidence 456677888898422 368999999999987766421 122 2366677788887
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc---cHHHhhhhcccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD---SYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID---pL~eIa~~~~~~d~~~~~i~ 391 (943)
..++...+.+++.++.+.++.+|+++|+++|+... +.+|+.+...+.+|.+- ++++|.+
T Consensus 123 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-----~~~v~~~~~~nptG~~~~~~~l~~i~~------------- 184 (367)
T 3euc_A 123 AMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQ-----PAIVYLAYPNNPTGNLFDAADMEAIVR------------- 184 (367)
T ss_dssp CHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHC-----CSEEEEESSCTTTCCCCCHHHHHHHHH-------------
T ss_pred HHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccC-----CCEEEEcCCCCCCCCCCCHHHHHHHHH-------------
Confidence 77775444588999999899999999999998731 55677778888899884 4677777
Q ss_pred ccCchHHHHHHc--CCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhh
Q psy11047 392 LQTNFPNFILSY--FPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR 469 (943)
Q Consensus 392 L~RrfR~iar~~--Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~ 469 (943)
+|++| |+ ++++|.+|+.+ ... + ..+ .
T Consensus 185 -------~~~~~~~~~-------~li~De~~~~~-~~~-------------------------------~--~~~----~ 212 (367)
T 3euc_A 185 -------AAQGSVCRS-------LVVVDEAYQPF-AQE-------------------------------S--WMS----R 212 (367)
T ss_dssp -------HTBTTSCBC-------EEEEECTTCCS-SSC-------------------------------C--SGG----G
T ss_pred -------hhhhcCCCc-------EEEEeCcchhh-ccc-------------------------------c--hHH----H
Confidence 89999 99 99999999865 210 0 111 1
Q ss_pred hcCCCCeeEEEEcCCCccC--ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH-HHHH
Q psy11047 470 IQGLGRAQNFTIVPSSLLR--VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI-KGLQ 546 (943)
Q Consensus 470 l~Gie~ADSItiDpHK~L~--vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~-~Gl~ 546 (943)
+.. ...+-+..++||++. .+-...+ ..+..+..-... ...|+ ...+..+.....+-. +.+.
T Consensus 213 ~~~-~~~~i~~~s~sK~~~~G~r~G~~~-----~~~~~~~~~~~~----~~~~~------~~~~~~~a~~~~l~~~~~~~ 276 (367)
T 3euc_A 213 LTD-FGNLLVMRTVSKLGLAGIRLGYVA-----GDPQWLEQLDKV----RPPYN------VNVLTEATALFALEHVAVLD 276 (367)
T ss_dssp GGT-CTTEEEEEECCCTTSCSCCEEEEE-----ECHHHHHHHGGG----CCSSC------CCHHHHHHHHHHHTTHHHHH
T ss_pred Hhh-CCCEEEEecchhhcccccCceeee-----eCHHHHHHHHHh----CCCCC------CCHHHHHHHHHHhcCHHHHH
Confidence 111 123566778999832 1111111 011111000000 00011 122222222222211 1222
Q ss_pred HHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC
Q psy11047 547 KHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR 626 (943)
Q Consensus 547 ~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~ 626 (943)
+..++ ..++++++.+.|++.|++++ .++
T Consensus 277 ~~~~~---------------------------------------------------~~~~~~~l~~~l~~~~g~~~-~~~ 304 (367)
T 3euc_A 277 EQAAQ---------------------------------------------------LRAERSRVAEGMAAHGGVTV-FPS 304 (367)
T ss_dssp HHHHH---------------------------------------------------HHHHHHHHHHHHHTSTTCEE-CCC
T ss_pred HHHHH---------------------------------------------------HHHHHHHHHHHHHhCCCcEE-CCC
Confidence 22222 24567788888888899985 456
Q ss_pred CccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc---CCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 627 HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL---RIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 627 ~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~---~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
..+.+.+++. + ...+.+.|.++|.+ +.+... ....++|++++ +++|++++++.|+++.
T Consensus 305 ~~~~~~~~~~--~--~~~l~~~l~~~gi~-v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 305 AANFLLARVP--D--AAQTFDRLLARKVL-IKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASL 365 (367)
T ss_dssp SSSEEEEECS--C--HHHHHHHHHTTTEE-CEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECC--C--HHHHHHHHHHCCeE-EEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHh
Confidence 6777788875 2 56788888888864 443221 23579999765 8999999999998763
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-12 Score=141.21 Aligned_cols=311 Identities=14% Similarity=0.063 Sum_probs=189.1
Q ss_pred HHHHHHHHHhccCccccC-ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhh
Q psy11047 208 LGDMLSDAINCLGFTWAS-SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKY 286 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~-SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~ 286 (943)
+.+.+...+... .|.. ++...+++. .+++++|.+ ..++|+|||+|+..++.+.+
T Consensus 34 ~~~a~~~~~~~~--~y~~~~~~~~~l~~----~la~~~~~~------------~v~~~~ggt~al~~~l~~l~------- 88 (424)
T 2po3_A 34 LYERLDRALDSQ--WLSNGGPLVREFEE----RVAGLAGVR------------HAVATCNATAGLQLLAHAAG------- 88 (424)
T ss_dssp HHHHHHHHHHHT--CCSSSCHHHHHHHH----HHHHHHTSS------------EEEEESCHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHhcC--CcccCCHHHHHHHH----HHHHHhCCC------------eEEEeCCHHHHHHHHHHHcC-------
Confidence 344455555432 2333 455555555 556667653 47999999999988877531
Q ss_pred cccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 287 ~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
+| -.|++++.+|.+...++...+..++.++++. ++.+|+++|+++|+.+ +.+|+.+ .
T Consensus 89 ----~g---------d~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~---~ 146 (424)
T 2po3_A 89 ----LT---------GEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPR------TSAVVGV---H 146 (424)
T ss_dssp ----CC---------SEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTT------EEEEEEE---C
T ss_pred ----CC---------CEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcC------CcEEEEE---C
Confidence 12 2477888999999888865445888899875 7889999999888643 4555554 3
Q ss_pred cccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhc-CCCccccccccccceeeeeecch
Q psy11047 366 AFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL-GDPRFEIPAARHLGMVVIRLLGE 444 (943)
Q Consensus 366 ~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~G-G~~afeLp~~~~Lg~VcFR~~~~ 444 (943)
.+|.+.++++|.+ +|++||+ |+++|++|+ |. .+.
T Consensus 147 ~tG~~~~l~~i~~--------------------la~~~~~-------~li~Dea~~~g~-~~~----------------- 181 (424)
T 2po3_A 147 LWGRPCAADQLRK--------------------VADEHGL-------RLYFDAAHALGC-AVD----------------- 181 (424)
T ss_dssp GGGCCCCHHHHHH--------------------HHHHTTC-------EEEEECTTCTTC-EET-----------------
T ss_pred CCCCcCCHHHHHH--------------------HHHHcCC-------EEEEECccccCC-eEC-----------------
Confidence 6889999999999 9999999 999999998 44 220
Q ss_pred hhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCc--------cCcchhhhhcccCccccccCCCCcccc
Q psy11047 445 NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRV--------KNSGALHRTFNVEPLYLRHENSGLAID 516 (943)
Q Consensus 445 ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~v--------r~~~~L~~af~~~p~YL~~~~~g~~~d 516 (943)
+ .. +.....+...+++.||++.. +++..+ ..+.. +....... .+.
T Consensus 182 --------------~----~~----~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~~l~-~~l~~---~~~~~~~~-~~~ 234 (424)
T 2po3_A 182 --------------G----RP----AGSLGDAEVFSFHATKAVNAFEGGAVVTDDADLA-ARIRA---LHNFGFDL-PGG 234 (424)
T ss_dssp --------------T----EE----TTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHH-HHHHH---HHBTTTTC-TTC
T ss_pred --------------C----ee----cccccCEEEEeCCCCCCccCCCCeEEEeCCHHHH-HHHHH---HHhcCccc-ccc
Confidence 0 00 11111234445555598872 212211 11110 11100000 001
Q ss_pred cCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccc
Q psy11047 517 YMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS 596 (943)
Q Consensus 517 ~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~ 596 (943)
. .......++..+..++.+.. .+++.+..++
T Consensus 235 ~--~~~g~~~~~~~~~aa~~l~~--~~~~~~~~~~--------------------------------------------- 265 (424)
T 2po3_A 235 S--PAGGTNAKMSEAAAAMGLTS--LDAFPEVIDR--------------------------------------------- 265 (424)
T ss_dssp C--TTCCCBCCCCHHHHHHHHHH--HHHHHHHHHH---------------------------------------------
T ss_pred c--cccCcCCCcCHHHHHHHHHH--HHHHHHHHHH---------------------------------------------
Confidence 0 01112224445555544432 2344443333
Q ss_pred cCCcHHHHHHHHHHHHHHhCCCCeEEecCCC-----ccEEEEEec----CCChHHHHHHHHHhccCcEEEeec-c--c--
Q psy11047 597 YFPKFQSVRLAQKFEALVLGDPRFEIPAARH-----LGMVVIRLL----GENILTEKLLKRLNSKGRLHCVPA-S--L-- 662 (943)
Q Consensus 597 ~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~-----l~iV~Fr~~----g~n~l~~~Ll~~L~~~G~~~~s~t-~--~-- 662 (943)
..++++++.+.|.+.|++++..++. ..++.|.++ +.+ ...+.+.|.++|.. +.+. . .
T Consensus 266 ------~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~L~~~gI~-v~~~~~~~~~~ 336 (424)
T 2po3_A 266 ------NRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIH--RDLVMEVLKAEGVH-TRAYFSPGCHE 336 (424)
T ss_dssp ------HHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSC--HHHHHHHHHHTTEE-CBCTTCSCGGG
T ss_pred ------HHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchhh--HHHHHHHHHHCCCc-eecccCCcccc
Confidence 3467788888999889999876332 256667775 222 46788888888753 4321 0 0
Q ss_pred ----CC-------------CcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 663 ----RI-------------QGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 663 ----~g-------------~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
.+ ...+|+.++..++++||+++++.|+++.+..
T Consensus 337 ~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~ 386 (424)
T 2po3_A 337 LEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRG 386 (424)
T ss_dssp STTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 00 1137777889999999999999999887654
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-13 Score=146.62 Aligned_cols=304 Identities=13% Similarity=0.043 Sum_probs=183.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
+..++...+++ +.+++++|.+ ..++++|||+|+..++.+.+ + .+| -
T Consensus 59 y~~~~~~~~l~----~~la~~~~~~------------~~v~~~~Gt~a~~~~l~~~~---~------~~g---------d 104 (399)
T 2oga_A 59 YLLGPELEGFE----AEFAAYCETD------------HAVGVNSGMDALQLALRGLG---I------GPG---------D 104 (399)
T ss_dssp CSSSHHHHHHH----HHHHHHTTSS------------EEEEESCHHHHHHHHHHHTT---C------CTT---------C
T ss_pred CCCchhHHHHH----HHHHHHHCCC------------eEEEecCHHHHHHHHHHHhC---C------CCc---------C
Confidence 33445555554 5667788764 36899999999988876532 0 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
.|+++..+|.++..++...+.+++.++.++ ++.+|+++|+++|+.+ +.+|+. ++.+|.+.|+++|.+
T Consensus 105 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~---~n~tG~~~~l~~i~~--- 172 (399)
T 2oga_A 105 EVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPR------TRALLP---VHLYGHPADMDALRE--- 172 (399)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTT------EEEECC---BCGGGCCCCHHHHHH---
T ss_pred EEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCC------CeEEEE---eCCcCCccCHHHHHH---
Confidence 477788899998888855445888899876 5899999999998653 444543 467899999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcc
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRL 461 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~ 461 (943)
+|+++|+ |+++|++|+.+..+
T Consensus 173 -----------------l~~~~~~-------~li~Dea~~~g~~~----------------------------------- 193 (399)
T 2oga_A 173 -----------------LADRHGL-------HIVEDAAQAHGARY----------------------------------- 193 (399)
T ss_dssp -----------------HHHHHTC-------EECEECTTCTTCEE-----------------------------------
T ss_pred -----------------HHHHcCC-------EEEEECcccccCcc-----------------------------------
Confidence 9999999 99999999754111
Q ss_pred cccchhhhhcCCCCeeEEEEcCC--CccCcc-Ccchh-hh--hcccCccccccCCCCcccccCccccCCCCCcchHHHHH
Q psy11047 462 HCVPASLRIQGLGRAQNFTIVPS--SLLRVK-NSGAL-HR--TFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWF 535 (943)
Q Consensus 462 ~~p~~r~~l~Gie~ADSItiDpH--K~L~vr-~~~~L-~~--af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~ 535 (943)
.... + + ..+|.+++++| |+++.. ....+ .. .+......+... |....+.......+.+...+.+|+
T Consensus 194 ~~~~----~-~-~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~~g~~~~~~~~~~a~ 265 (399)
T 2oga_A 194 RGRR----I-G-AGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNY--GSRQKYSHETKGTNSRLDEMQAAV 265 (399)
T ss_dssp TTEE----T-T-CTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBT--TCSSTTCCCSCCCBCCCCHHHHHH
T ss_pred CCee----c-c-cccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhc--CccccccccccccCCCcCHHHHHH
Confidence 0000 1 1 12477888875 998842 11111 00 000000000000 110111111112222345555555
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHh
Q psy11047 536 VIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 615 (943)
Q Consensus 536 tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~ 615 (943)
.+..+ +.+.+..++ ..++++++.+.|.
T Consensus 266 ~~~~l--~~~~~~~~~---------------------------------------------------~~~~~~~l~~~L~ 292 (399)
T 2oga_A 266 LRIRL--AHLDSWNGR---------------------------------------------------RSALAAEYLSGLA 292 (399)
T ss_dssp HHHHH--HTHHHHHHH---------------------------------------------------HHHHHHHHHHHTT
T ss_pred HHHHH--HHHHHHHHH---------------------------------------------------HHHHHHHHHHHhc
Confidence 44322 222222222 3467888889999
Q ss_pred CCCCeEEecCCC-cc-E-EEEEecCCChHHHHHHHHHhccCcEEEeecc--cC--------C-------------CcEEE
Q psy11047 616 GDPRFEIPAARH-LG-M-VVIRLLGENILTEKLLKRLNSKGRLHCVPAS--LR--------I-------------QGLGR 669 (943)
Q Consensus 616 ~~p~~eIl~~~~-l~-i-V~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~--~~--------g-------------~~~lR 669 (943)
++|++++...+. .+ + +.|.+...+ ..++.+.|.++|........ .. + ..++|
T Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lR 370 (399)
T 2oga_A 293 GLPGIGLPVTAPDTDPVWHLFTVRTER--RDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLS 370 (399)
T ss_dssp TCTTCBCCCCCTTEECCCSSEEEECSS--HHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEE
T ss_pred cCCCccccCCCCCCcceeEEEEEECCC--HHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEE
Confidence 888888764332 22 2 235554332 46788888888864322110 00 0 25899
Q ss_pred EeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 670 AQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 670 ~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+++++.+|++||+++++.|+++.++
T Consensus 371 i~~~~~~t~edi~~~~~~l~~~~~~ 395 (399)
T 2oga_A 371 LPIGPHLERPQALRVIDAVREWAER 395 (399)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887543
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.3e-13 Score=144.21 Aligned_cols=299 Identities=13% Similarity=0.027 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
..+..++.+++++++|.+ ..++|+|||+|+..++.+.. .+| -.|+++..
T Consensus 87 ~~~~~~l~~~la~~~g~~------------~v~~~~ggt~a~~~~~~~~~----------~~g---------d~V~~~~p 135 (398)
T 3a2b_A 87 LDIHVELEEKLSAYVGKE------------AAILFSTGFQSNLGPLSCLM----------GRN---------DYILLDER 135 (398)
T ss_dssp CHHHHHHHHHHHHHHTCS------------EEEEESSHHHHHHHHHHHSS----------CTT---------CEEEEETT
T ss_pred cHHHHHHHHHHHHHhCCC------------cEEEECCHHHHHHHHHHHHh----------CCC---------CEEEECCc
Confidence 456667888999999863 47999999999988877531 122 34778899
Q ss_pred CchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccc
Q psy11047 310 AHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 310 aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~ 389 (943)
+|.+...++.+.+.+++.++. +|+++|++.++.... + .+.+|+.+...+.+|.+.|+++|.+
T Consensus 136 ~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~-~-~~~~v~~~~~~nptG~~~~~~~l~~----------- 197 (398)
T 3a2b_A 136 DHASIIDGSRLSFSKVIKYGH-----NNMEDLRAKLSRLPE-D-SAKLICTDGIFSMEGDIVNLPELTS----------- 197 (398)
T ss_dssp CCHHHHHHHHHSSSEEEEECT-----TCHHHHHHHHHTSCS-S-SCEEEEEESBCTTTCCBCCHHHHHH-----------
T ss_pred cCHHHHHHHHHcCCceEEeCC-----CCHHHHHHHHHhhcc-C-CceEEEEeCCCCCCCCccCHHHHHH-----------
Confidence 999999988654557777876 689999999976421 1 3667777777778999999999999
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhh
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR 469 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~ 469 (943)
+|++||+ |+++|.+|+.+ .+. . .-.....
T Consensus 198 ---------~~~~~~~-------~li~De~~~~~-~~~-~--------------------------------~~~~~~~- 226 (398)
T 3a2b_A 198 ---------IANEFDA-------AVMVDDAHSLG-VIG-H--------------------------------KGAGTAS- 226 (398)
T ss_dssp ---------HHHHHTC-------EEEEECTTTTT-TSS-G--------------------------------GGCCHHH-
T ss_pred ---------HHHHcCc-------EEEEECCCccc-ccC-C--------------------------------CCCchHh-
Confidence 9999999 99999999755 220 0 0000101
Q ss_pred hcCC-CCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHH
Q psy11047 470 IQGL-GRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQK 547 (943)
Q Consensus 470 l~Gi-e~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~ 547 (943)
..++ +++|.++.++||+++... +.+. ..+..+..-... ...+...++-. .....+...++.+ +.+.+
T Consensus 227 ~~~~~~~~di~~~s~sK~~~~~G-G~~~----~~~~~~~~l~~~----~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~ 295 (398)
T 3a2b_A 227 HFGLNDDVDLIMGTFSKSLASLG-GFVA----GDADVIDFLKHN----ARSVMFSASMTPASVASTLKALEII--QNEPE 295 (398)
T ss_dssp HHTCGGGCSEEEEESSSTTCSSC-EEEE----ECHHHHHHHHHH----CHHHHSSBCCCHHHHHHHHHHHHHH--HHCTH
T ss_pred hcCCCcCCeEEEecccccccCCC-cEEE----eCHHHHHHHHHh----cccceecCCCCHHHHHHHHHHHHHH--hhCHH
Confidence 1132 246999999999998433 2210 011111000000 00000000001 0000111122211 00111
Q ss_pred HHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCC
Q psy11047 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 627 (943)
Q Consensus 548 ~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~ 627 (943)
..++ ..++++++.+.|++. ++++.. +.
T Consensus 296 ~~~~---------------------------------------------------~~~~~~~l~~~L~~~-g~~~~~-~~ 322 (398)
T 3a2b_A 296 HIEK---------------------------------------------------LWKNTDYAKAQLLDH-GFDLGA-TE 322 (398)
T ss_dssp HHHH---------------------------------------------------HHHHHHHHHHHHHHT-TCCBCS-CC
T ss_pred HHHH---------------------------------------------------HHHHHHHHHHHHHhc-CCCcCC-CC
Confidence 1111 234566677777766 677654 45
Q ss_pred ccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc----CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL----RIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~----~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
.+++.+.++. ......+.++|.++|. ++.+... .+..++|++++..+++++++++++.|+++.++
T Consensus 323 g~~~~~~~~~-~~~~~~l~~~l~~~gi-~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 323 SPILPIFIRS-NEKTFWVTKMLQDDGV-FVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp SSEEEEECCC-HHHHHHHHHHHHHTTE-ECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCC-HHHHHHHHHHHHHCCc-EEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 6788888753 2235678888888875 4544322 13578999888889999999999999887543
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-12 Score=136.37 Aligned_cols=291 Identities=10% Similarity=-0.041 Sum_probs=179.7
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
..+.+++++++|.+.+ ..++|+|||+|+..++.+.. .+| -.|+++..+|.+
T Consensus 54 ~~l~~~la~~~~~~~~----------~i~~~~g~~~a~~~~~~~l~----------~~g---------d~vl~~~~~~~~ 104 (354)
T 3ly1_A 54 LMLGNKLAAHHQVEAP----------SILLTAGSSEGIRAAIEAYA----------SLE---------AQLVIPELTYGD 104 (354)
T ss_dssp HHHHHHHHHHTTSCGG----------GEEEESHHHHHHHHHHHHHC----------CTT---------CEEEEESSSCTH
T ss_pred HHHHHHHHHHhCCChH----------HEEEeCChHHHHHHHHHHHh----------CCC---------CeEEECCCCchH
Confidence 4577888999998654 68999999999988876531 122 246678889999
Q ss_pred HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 393 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~ 393 (943)
+..++...+.+++.++.+.++.+|+++|+++|++. ..+.+|+.+...+.+|.+-|++++.+
T Consensus 105 ~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~----~~~~~v~l~~p~nptG~~~~~~~l~~--------------- 165 (354)
T 3ly1_A 105 GEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAY----SGPSIVYLVNPNNPTGTITPADVIEP--------------- 165 (354)
T ss_dssp HHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTC----SSCEEEEEESSCTTTCCCCCHHHHHH---------------
T ss_pred HHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccC----CCCCEEEEeCCCCCcCCCcCHHHHHH---------------
Confidence 98888654458899999888999999999999841 12677777888899999999888888
Q ss_pred CchHHHHHH--cCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhc
Q psy11047 394 TNFPNFILS--YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQ 471 (943)
Q Consensus 394 RrfR~iar~--~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~ 471 (943)
+++. ||+ ++++|.+|+++ .+. +. .+.....+.
T Consensus 166 -----l~~~~~~~~-------~li~De~~~~~-~~~-------------------------------~~--~~~~~~~~~ 199 (354)
T 3ly1_A 166 -----WIASKPANT-------MFIVDEAYAEF-VND-------------------------------PR--FRSISPMIT 199 (354)
T ss_dssp -----HHHTCCTTE-------EEEEECTTGGG-CCC-------------------------------TT--CCCSHHHHH
T ss_pred -----HHHhCCCCe-------EEEEeccHHHh-ccc-------------------------------cc--cCCHHHHhh
Confidence 7666 999 99999999865 220 00 001111112
Q ss_pred CCCCeeEEEEcCCCccCccC---cchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH-HHHHH
Q psy11047 472 GLGRAQNFTIVPSSLLRVKN---SGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI-KGLQK 547 (943)
Q Consensus 472 Gie~ADSItiDpHK~L~vr~---~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~-~Gl~~ 547 (943)
.....+-+..++||+++... ...+ .++..+..-. .... .. ....+..++....+-. ..+.+
T Consensus 200 ~~~~~~i~~~s~sK~~g~~G~r~G~~~-----~~~~~~~~~~-----~~~~---~~--~~~~~~~~a~~~~l~~~~~~~~ 264 (354)
T 3ly1_A 200 QGAENIILLKTFSKIHAMAGMRVGYAV-----AHPTVIALMG-----RYVA---GE--KINFSGVDAALASMNDSAFITY 264 (354)
T ss_dssp TTCSSEEEEEESSSTTCCGGGCCEEEE-----CCHHHHHHHG-----GGTT---CS--CCCHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCEEEEeeChhhccChhhhheeee-----cCHHHHHHHH-----HhcC---CC--CCCHHHHHHHHHHhcCHHHHHH
Confidence 21134577889999987221 1111 0111110000 0000 00 1112222222222211 11222
Q ss_pred HHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCC
Q psy11047 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 627 (943)
Q Consensus 548 ~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~ 627 (943)
..++ ..++++++.+.|.+. ++++. ++.
T Consensus 265 ~~~~---------------------------------------------------~~~~~~~l~~~l~~~-~~~~~-~~~ 291 (354)
T 3ly1_A 265 SKKS---------------------------------------------------NDVSRQILLKALEDL-KLPYL-PSE 291 (354)
T ss_dssp HHHH---------------------------------------------------HHHHHHHHHHHHHHH-TCCBC-CCC
T ss_pred HHHH---------------------------------------------------HHHHHHHHHHHHHHC-CCeEC-CCC
Confidence 2211 234555666666655 56655 456
Q ss_pred ccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
.+.+.+++.+ ....+.+.|.++|. ++.........++|++++ +++|++++++.|+++.+
T Consensus 292 ~~~~~~~~~~---~~~~~~~~l~~~gi-~v~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 292 GNFVFHQLVV---PLKDYQTHMADAGV-LIGRAFPPADNWCRISLG---TPQEMQWVADTMREFRK 350 (354)
T ss_dssp SSEEEEECSS---CHHHHHHHHHHTTE-ECCCCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCC---CHHHHHHHHHHCCE-EEeecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence 6778888764 25678888888885 444211224679999765 78999999999987654
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-13 Score=145.54 Aligned_cols=302 Identities=12% Similarity=0.070 Sum_probs=175.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|...|...++| +++++++|.+ ..++|+|||+||..++.+.. .+| -
T Consensus 34 y~~~~~~~~l~----~~la~~~g~~------------~~~~~~~gt~a~~~~~~~~~----------~~g---------d 78 (347)
T 1jg8_A 34 YGEDPTINELE----RLAAETFGKE------------AALFVPSGTMGNQVSIMAHT----------QRG---------D 78 (347)
T ss_dssp GTCCHHHHHHH----HHHHHHHTCS------------EEEEESCHHHHHHHHHHHHC----------CTT---------C
T ss_pred cCCChHHHHHH----HHHHHHhCCc------------eEEEecCcHHHHHHHHHHhc----------CCC---------C
Confidence 44455555555 5778888874 36899999999987765421 122 2
Q ss_pred EEEecCCCchHHHH---HHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcc-ccccc---HHH
Q psy11047 303 VAYCSDQAHSSVEK---AGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF-LVVDS---YCC 375 (943)
Q Consensus 303 vV~~S~~aHySv~K---Aa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~t-GaIDp---L~e 375 (943)
.|++++.+|.+... ++.+.+.+++.+ .++++.+|+++|+++|+.....+..+.+|+.+..++.+ |.+-| +++
T Consensus 79 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~ 157 (347)
T 1jg8_A 79 EVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKE 157 (347)
T ss_dssp EEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHH
T ss_pred EEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHH
Confidence 46778889988654 334444577777 55678899999999986421111135677776666677 88755 567
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHh
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRL 455 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l 455 (943)
|.+ +|++||+ ++++|+|+.-+ .+ ..
T Consensus 158 i~~--------------------~a~~~~~-------~li~D~a~~~~-~~--~~------------------------- 182 (347)
T 1jg8_A 158 ICT--------------------IAKEHGI-------NVHIDGARIFN-AS--IA------------------------- 182 (347)
T ss_dssp HHH--------------------HHHHHTC-------EEEEEETTHHH-HH--HH-------------------------
T ss_pred HHH--------------------HHHHCCC-------EEEeehhhhhc-ch--hh-------------------------
Confidence 777 9999999 99999985311 00 00
Q ss_pred hccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccC-ccccCCCCCcchHHHH
Q psy11047 456 NSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYM-HWQIPLSKRFRALKLW 534 (943)
Q Consensus 456 ~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~-~~tie~SRrfrALklW 534 (943)
.+ . ...... ..+|++++++||+++.+-+..+. .++.++..-. ... .++ ++-+..++
T Consensus 183 --~~---~-~~~~~~---~~~d~~~~s~sK~l~~~~G~~~~----~~~~~~~~~~-----~~~~~~~--~~~~~~~~--- 239 (347)
T 1jg8_A 183 --SG---V-PVKEYA---GYADSVMFCLSKGLCAPVGSVVV----GDRDFIERAR-----KARKMLG--GGMRQAGV--- 239 (347)
T ss_dssp --HC---C-CHHHHH---HTCSEEEEESSSTTCCSSCEEEE----ECHHHHHHHH-----HHHHHHT--CCCSSTHH---
T ss_pred --cC---C-ChHHhc---ccccEEEEecccccCCCceEEEE----cCHHHHHHHH-----HHHHHcC--CchhHHHH---
Confidence 00 0 011111 24689999999998843221110 0111111000 000 000 00011111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHH
Q psy11047 535 FVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 614 (943)
Q Consensus 535 ~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L 614 (943)
....+..++....+++ ++ ..+.++++.+.|
T Consensus 240 --~~~~~~~~l~~~~~~~-----------------------~~-------------------------~~~~~~~l~~~L 269 (347)
T 1jg8_A 240 --LAAAGIIALTKMVDRL-----------------------KE-------------------------DHENARFLALKL 269 (347)
T ss_dssp --HHHHHHHHHHHSSTTH-----------------------HH-------------------------HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHH-----------------------HH-------------------------HHHHHHHHHHHH
Confidence 2222333333221110 00 233456666666
Q ss_pred hCCCCeEEe-cCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 615 LGDPRFEIP-AARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 615 ~~~p~~eIl-~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
++. ++++. .++..+++.|++++.+....++.++|.++|.+ +.+. +.+.+|++++..+++++++++++.|+++.+
T Consensus 270 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~-v~~~---~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~ 344 (347)
T 1jg8_A 270 KEI-GYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVL-ANAV---SDTEIRLVTHKDVSRNDIEEALNIFEKLFR 344 (347)
T ss_dssp HHH-TCBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEE-CEEE---ETTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred Hhc-CceeccCCCcceEEEEEcccccCCHHHHHHHHHHCCCE-EecC---CCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 665 66653 35678888898863111256788888877753 3332 246899998889999999999999988754
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=149.91 Aligned_cols=302 Identities=11% Similarity=0.032 Sum_probs=180.3
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|....+|..+.+++++++|.+.. -+++++||+|+..++.++. .+| -.|
T Consensus 63 g~~~~~~~e~~ar~~la~~~g~~~~-----------~i~~~sGt~a~~~~~~~~~----------~~g---------d~V 112 (407)
T 2dkj_A 63 GCEVIDRVESLAIERAKALFGAAWA-----------NVQPHSGSQANMAVYMALM----------EPG---------DTL 112 (407)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEE-----------ECCCSSHHHHHHHHHHHHC----------CTT---------CEE
T ss_pred CchHHHHHHHHHHHHHHHHhCCCcc-----------eEEecchHHHHHHHHHHhc----------CCC---------CEE
Confidence 4455568888888999999998642 3566677889888877641 122 246
Q ss_pred EecCCCchHHH---HHH-HHCC-ccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 305 YCSDQAHSSVE---KAG-LIGL-VNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 305 ~~S~~aHySv~---KAa-~LG~-~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
++++.+|.+.. .++ ..|. ...+.++++ +++.+|+++|+++|+... +.+|+. .+...|.+.|+++|.+
T Consensus 113 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-----~~~v~~--~~p~~~~~~~l~~i~~ 185 (407)
T 2dkj_A 113 MGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHR-----PKVIVA--GASAYPRFWDFKAFRE 185 (407)
T ss_dssp EEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHHHHHH
T ss_pred EEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcC-----CeEEEE--eccccCCCCCHHHHHH
Confidence 67778887763 333 2332 123344444 378999999999998521 445554 3344468889999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhcc
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK 458 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~ 458 (943)
+|++||+ |+++|++|+.+ .. +
T Consensus 186 --------------------l~~~~~~-------~li~Dea~~~g-~~--~----------------------------- 206 (407)
T 2dkj_A 186 --------------------IADEVGA-------YLVVDMAHFAG-LV--A----------------------------- 206 (407)
T ss_dssp --------------------HHHHHTC-------EEEEECTTTHH-HH--H-----------------------------
T ss_pred --------------------HHHHcCC-------EEEEEcccccc-cc--c-----------------------------
Confidence 9999999 99999999763 11 0
Q ss_pred CcccccchhhhhcCCCCeeEEEEcCCCccC-ccCcchhhhhcccCccc---cccCCCCcccccCccccCCCCCcc-hHHH
Q psy11047 459 GRLHCVPASLRIQGLGRAQNFTIVPSSLLR-VKNSGALHRTFNVEPLY---LRHENSGLAIDYMHWQIPLSKRFR-ALKL 533 (943)
Q Consensus 459 G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-vr~~~~L~~af~~~p~Y---L~~~~~g~~~d~~~~tie~SRrfr-ALkl 533 (943)
..... ..++.+|.++.++||++. .+- +.+. ..++.. +.... ..+.. ++-... ...+
T Consensus 207 ----~~~~~---~~~~~~di~~~s~sK~l~g~~~-G~~~---~~~~~~~~~l~~~~-------~~~~~-~~~~~~~~~a~ 267 (407)
T 2dkj_A 207 ----AGLHP---NPLPYAHVVTSTTHKTLRGPRG-GLIL---SNDPELGKRIDKLI-------FPGIQ-GGPLEHVIAGK 267 (407)
T ss_dssp ----TTCSC---CCTTTCSEEEEESSGGGCCCSC-EEEE---ESCHHHHHHHHHHH-------TTTTC-SSCCHHHHHHH
T ss_pred ----cCccC---CccccccEEEEeccccCCCCCc-eEEE---ECCHHHHHHHHhhh-------ccccc-CCCcHHHHHHH
Confidence 00000 012247999999999886 322 1110 000111 10000 00110 111111 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHH
Q psy11047 534 WFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL 613 (943)
Q Consensus 534 W~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~ 613 (943)
..++..+...++.+.+++ ..++++++.+.
T Consensus 268 ~~al~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~l~~~ 296 (407)
T 2dkj_A 268 AVAFFEALQPEFKEYSRL---------------------------------------------------VVENAKRLAEE 296 (407)
T ss_dssp HHHHHHHHSHHHHHHHHH---------------------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH---------------------------------------------------HHHHHHHHHHH
Confidence 233333222344444444 24567777778
Q ss_pred HhCCCCeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc-------CCCcEEEEeecC----CCCHHHH
Q psy11047 614 VLGDPRFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL-------RIQGLGRAQNFT----RTTNDDI 681 (943)
Q Consensus 614 L~~~p~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~-------~g~~~lR~v~~~----~tt~edI 681 (943)
|++. ++++..+ ...+++.+++.+.......+.+.|.++|. ++.+... ....++|++++. .++++|+
T Consensus 297 L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i 374 (407)
T 2dkj_A 297 LARR-GYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGI-TVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEM 374 (407)
T ss_dssp HHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTE-ECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGH
T ss_pred HHhC-CceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCc-eecCCcCccccccccCCCceeeecccccccCCCHHHH
Confidence 8777 7888764 46888899886421124678888888775 4443211 124689996654 4789999
Q ss_pred HHHHHHHHHHHHH
Q psy11047 682 TRDWNEIRNTATE 694 (943)
Q Consensus 682 d~ll~~I~~~~~~ 694 (943)
+++++.|+++..+
T Consensus 375 ~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 375 PLVAELIDRALLE 387 (407)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988765
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-12 Score=140.58 Aligned_cols=289 Identities=14% Similarity=0.053 Sum_probs=177.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+++++++|.+. .+++++||+||..++.+.. .+| -.|+++...|.+.
T Consensus 108 ~l~~~la~~~g~~~------------~i~~~sGt~a~~~~l~~~~----------~~g---------d~Vl~~~~~~~~~ 156 (409)
T 3kki_A 108 MIEKRLAKFTGFDE------------CLLSQSGWNANVGLLQTIC----------QPN---------TNVYIDFFAHMSL 156 (409)
T ss_dssp HHHHHHHHHHTCSE------------EEEESCHHHHHHHHHHHHC----------CTT---------CEEEEETTSCHHH
T ss_pred HHHHHHHHHhCCCe------------EEEecchHHHHHHHHHHhc----------CCC---------CEEEECCCcCHHH
Confidence 45667888888753 4777888999988876431 122 3577899999999
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++.+.+..++.++. +|+++|+++|++.. +.+|+.+...+.+|.+.|+++|.+
T Consensus 157 ~~~~~~~g~~~~~~~~-----~d~~~le~~l~~~~-----~~~vi~~~~~nptG~~~~l~~l~~---------------- 210 (409)
T 3kki_A 157 WEGARYANAQAHPFMH-----NNCDHLRMLIQRHG-----PGIIVVDSIYSTLGTIAPLAELVN---------------- 210 (409)
T ss_dssp HHHHHHTTCEEEEECT-----TCHHHHHHHHHHHC-----SCEEEEESBCTTTCCBCCHHHHHH----------------
T ss_pred HHHHHHcCCeEEEecC-----CCHHHHHHHHHhcC-----CeEEEECCCCCCCCCcCCHHHHHH----------------
Confidence 9988654456666654 68999999998642 457777777788999999999999
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC-
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL- 473 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi- 473 (943)
+|++||+ |+++|.+|++. .+. + .|.... .. .++
T Consensus 211 ----la~~~~~-------~li~De~~~~g-~~g-~----------------------------~g~~~~----~~-~~~~ 244 (409)
T 3kki_A 211 ----ISKEFGC-------ALLVDESHSLG-THG-P----------------------------NGAGLL----AE-LGLT 244 (409)
T ss_dssp ----HHHHHTC-------EEEEECTTTTT-TSS-G----------------------------GGCCHH----HH-HTCG
T ss_pred ----HHHHcCC-------EEEEECCcccc-ccC-C----------------------------CCCcch----hh-cCCC
Confidence 9999999 99999999875 220 0 000011 11 122
Q ss_pred CCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH-HHHHHHHHHH
Q psy11047 474 GRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI-KGLQKHIREI 552 (943)
Q Consensus 474 e~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~-~Gl~~~I~~~ 552 (943)
..+|.++.++||+++.. ...+ ..++..+..-... ...+....+ ...+.+...+..+.. +...+..++
T Consensus 245 ~~~di~~~s~sK~~~~~-gg~v----~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~aa~~aal~~~~~~~~~~~~- 312 (409)
T 3kki_A 245 REVHFMTASLAKTFAYR-AGAI----WCNNEVNRCVPFI----SYPAIFSST--LLPYEAAGLETTLEIIESADNRRQH- 312 (409)
T ss_dssp GGCSEEEEESSSTTCSS-CEEE----EESSSGGGTHHHH----CHHHHHSBC--CCHHHHHHHHHHHHHHHHCHHHHHH-
T ss_pred CCCCEEEeecchhhCCC-ceEE----EECHHHHHHHHHh----CcCccccCC--CcHHHHHHHHHHHHHHhcCHHHHHH-
Confidence 35789999999999833 1111 0011111000000 000001111 111111111221110 000111111
Q ss_pred HhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEE
Q psy11047 553 FSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVV 632 (943)
Q Consensus 553 l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~ 632 (943)
..++++++.+.|.+. ++++. ...+++.
T Consensus 313 --------------------------------------------------~~~~~~~l~~~L~~~-g~~~~--~~~~~~~ 339 (409)
T 3kki_A 313 --------------------------------------------------LDRMARKLRIGLSQL-GLTIR--SESQIIG 339 (409)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHTT-TCCCC--CSSSEEE
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHc-CCccC--CCCCEEE
Confidence 235667788888776 56665 4667788
Q ss_pred EEecCCChHHHHHHHHHhccCcEEEeec----ccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 633 IRLLGENILTEKLLKRLNSKGRLHCVPA----SLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 633 Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t----~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
+.+... .....+.++|.++|.+ +.+. .-.+..++|++++..+++++|+++++.|+++.+
T Consensus 340 ~~~~~~-~~~~~~~~~L~~~Gv~-v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~ 402 (409)
T 3kki_A 340 LETGDE-RNTEKVRDYLESNGVF-GSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVN 402 (409)
T ss_dssp EEEESH-HHHHHHHHHHHHTTEE-CEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCH-HHHHHHHHHHHHCCce-EeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHh
Confidence 887642 2356788888888754 4332 123567999998889999999999999987754
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.3e-13 Score=144.68 Aligned_cols=126 Identities=10% Similarity=-0.007 Sum_probs=97.6
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE 315 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~ 315 (943)
+.+.+++++|.+.+ ..++|+|||+|+..++.+.. .+| -.|++++.+|.++.
T Consensus 66 l~~~la~~~~~~~~----------~v~~~~g~~~a~~~~~~~~~----------~~g---------d~Vl~~~~~~~~~~ 116 (381)
T 1v2d_A 66 LREALAEEFAVEPE----------SVVVTSGATEALYVLLQSLV----------GPG---------DEVVVLEPFFDVYL 116 (381)
T ss_dssp HHHHHHHHHTSCGG----------GEEEESSHHHHHHHHHHHHC----------CTT---------CEEEEEESCCTTHH
T ss_pred HHHHHHHhcCCChh----------hEEEcCChHHHHHHHHHHhC----------CCC---------CEEEEcCCCchhHH
Confidence 44456677887654 58999999999988876541 122 24677788999988
Q ss_pred HHHHHCCccEEEEecC---CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccccccccc
Q psy11047 316 KAGLIGLVNMRYIESD---DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 316 KAa~LG~~~v~~Vp~D---~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~ 389 (943)
.++...+.+++.++.+ +++.+|+++|+++|+.+ +.+|+.+...+.+|.+-| +++|.+
T Consensus 117 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~l~~i~~----------- 179 (381)
T 1v2d_A 117 PDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPR------TRALLLNTPMNPTGLVFGERELEAIAR----------- 179 (381)
T ss_dssp HHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHH-----------
T ss_pred HHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcC------CEEEEECCCCCCCCCccCHHHHHHHHH-----------
Confidence 8775444588889886 56889999999888532 667777788888998855 788888
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+++|.+|+++
T Consensus 180 ---------~~~~~~~-------~li~De~~~~~ 197 (381)
T 1v2d_A 180 ---------LARAHDL-------FLISDEVYDEL 197 (381)
T ss_dssp ---------HHHHTTC-------EEEEECTTTTC
T ss_pred ---------HHHHcCC-------EEEEEcCcccc
Confidence 9999999 99999999876
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-12 Score=140.67 Aligned_cols=157 Identities=10% Similarity=-0.001 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCC-cEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 207 LLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPG-GGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 207 ilgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~-~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
.+.+.+...++.....|...+...+++..+.+|+.+.+|++.. .. ..++|+|||+|+..++.+..
T Consensus 47 ~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~--------~~~~v~~~~g~~~a~~~~~~~~~------ 112 (386)
T 1u08_A 47 YLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPD--------ADSDITVTAGATEALYAAITALV------ 112 (386)
T ss_dssp HHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCC--------TTTTEEEESSHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCC--------CCCCEEEcCChHHHHHHHHHHhC------
Confidence 3445555555432233444445688999999999999997532 13 68999999999988876531
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLAL 364 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGT 364 (943)
.+| -.|++++-+|.++..++...+.+++.++.+. ++.+|+++|+++|..+ +.+|+.+...
T Consensus 113 ----~~g---------d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~p~ 173 (386)
T 1u08_A 113 ----RNG---------DEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSER------TRLVILNTPH 173 (386)
T ss_dssp ----CTT---------CEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTT------EEEEEEESSC
T ss_pred ----CCC---------CEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhccc------CEEEEEeCCC
Confidence 122 2466777889888887755445888899875 5789999999988532 5677777788
Q ss_pred Cccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 365 PAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 365 T~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+|.+-| +++|.+ +|++||+ |+++|.+|+++
T Consensus 174 nptG~~~~~~~l~~i~~--------------------~~~~~~~-------~li~De~~~~~ 208 (386)
T 1u08_A 174 NPSATVWQQADFAALWQ--------------------AIAGHEI-------FVISDEVYEHI 208 (386)
T ss_dssp TTTCCCCCHHHHHHHHH--------------------HHTTSCC-------EEEEECTTTTC
T ss_pred CCCCccCCHHHHHHHHH--------------------HHHHcCc-------EEEEEcccccc
Confidence 88998865 677777 9999999 99999999876
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-12 Score=140.65 Aligned_cols=155 Identities=7% Similarity=-0.123 Sum_probs=111.9
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+.+.+...++.....|... ..+++..+.+|+++.+|++.. ....++|+|||+|+..++.+..
T Consensus 49 v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~--------~~~v~~t~g~~~a~~~~~~~l~-------- 110 (399)
T 1c7n_A 49 LIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQ--------TDWIINTAGVVPAVFNAVREFT-------- 110 (399)
T ss_dssp HHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCC--------GGGEEEESSHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCC--------hhhEEEcCCHHHHHHHHHHHhc--------
Confidence 4444444443322333332 678888999999998885422 1268999999999988876531
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC-CC--CCcCHHHHHHHHHHhhccCCCcEEEEEecCC
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD-DK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLAL 364 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D-~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaGT 364 (943)
.+| -.|++..-+|.+...++...+.+++.+|.+ ++ +.+|+++|+++|+.. .+.+|+.+...
T Consensus 111 --~~g---------d~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~ 174 (399)
T 1c7n_A 111 --KPG---------DGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPH 174 (399)
T ss_dssp --CTT---------CEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCT-----TEEEEEEESSB
T ss_pred --CCC---------CEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccC-----CCcEEEEcCCC
Confidence 122 246778889999888875434477888875 33 369999999999732 15666677788
Q ss_pred Cccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 365 PAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 365 T~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+|.+-| +++|.+ +|++||+ ++++|.+|+++
T Consensus 175 nptG~~~~~~~l~~i~~--------------------~~~~~~~-------~li~De~~~~~ 209 (399)
T 1c7n_A 175 NPVGRVWKKDELQKIKD--------------------IVLKSDL-------MLWSDEIHFDL 209 (399)
T ss_dssp TTTTBCCCHHHHHHHHH--------------------HHHHSSC-------EEEEECTTTTC
T ss_pred CCCCcCcCHHHHHHHHH--------------------HHHHcCC-------EEEEEcccccc
Confidence 88999988 888888 9999999 99999999876
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-12 Score=138.82 Aligned_cols=294 Identities=11% Similarity=-0.022 Sum_probs=171.7
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCc-EEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGG-GVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~-GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
+|...++-.++.+++++++|.+++ .. .++|+|||+++..++.+. + .+| +- |
T Consensus 44 ~~~~~~~~~~~~~~la~~~g~~~~---------~~~i~~t~g~t~a~~~~~~~l----~------~~g--------d~-v 95 (362)
T 2c0r_A 44 GAVYEAVHNEAQARLLALLGNPTG---------YKVLFIQGGASTQFAMIPMNF----L------KEG--------QT-A 95 (362)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCSS---------EEEEEESSHHHHHHHHHHHHH----C------CTT--------CE-E
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCC---------cEEEEECCCchHHHHHHHHhc----C------CCC--------Ce-E
Confidence 566667777899999999999752 13 367899999998776642 1 122 22 3
Q ss_pred EecCCCchHH--HHHH-HHCCccEEEEecCC---CC-CcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc-ccHHHh
Q psy11047 305 YCSDQAHSSV--EKAG-LIGLVNMRYIESDD---KL-SLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV-DSYCCL 376 (943)
Q Consensus 305 ~~S~~aHySv--~KAa-~LG~~~v~~Vp~D~---~g-rmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI-DpL~eI 376 (943)
++....|++. ...+ ..| +++.++++. .+ .+|.++++ |+. .+.+|+.+...+.+|.+ +| +
T Consensus 96 l~~~~~~~~~~~~~~~~~~g--~~~~v~~~~~~~~~~~~~~~~~~--i~~------~t~~v~~~~~~n~tG~~~~~---l 162 (362)
T 2c0r_A 96 NYVMTGSWASKALKEAKLIG--DTHVAASSEASNYMTLPKLQEIQ--LQD------NAAYLHLTSNETIEGAQFKA---F 162 (362)
T ss_dssp EEEECSHHHHHHHHHHHHHS--CEEEEEECGGGTTCSCCCGGGCC--CCT------TEEEEEEESEETTTTEECSS---C
T ss_pred EEEecCcHhHHHHHHHHHhC--CeEEEecccccccccCCCHHHcc--cCC------CcCEEEEeCCcCccceeccc---c
Confidence 3344566663 3444 356 788888762 22 35666543 322 27788888889999995 65 3
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhh
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLN 456 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~ 456 (943)
.+ + +|+ |+|+|+||+.+ ..
T Consensus 163 ~~--------------------i---~~~-------~vivD~a~~~~-~~------------------------------ 181 (362)
T 2c0r_A 163 PD--------------------T---GSV-------PLIGDMSSDIL-SR------------------------------ 181 (362)
T ss_dssp CC--------------------C---TTS-------CEEEECTTTTT-SS------------------------------
T ss_pred cc--------------------c---CCC-------EEEEEChhhcc-CC------------------------------
Confidence 44 4 688 99999999755 21
Q ss_pred ccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccc---cccCCCCcccccCcc----ccCCCCC-c
Q psy11047 457 SKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLY---LRHENSGLAIDYMHW----QIPLSKR-F 528 (943)
Q Consensus 457 ~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~Y---L~~~~~g~~~d~~~~----tie~SRr-f 528 (943)
..+ +...|.++.++|||++...-+.+. ..+.. +..... ...++..+ ...++-. +
T Consensus 182 -----~~~--------~~~~d~~~~s~~K~~g~~G~G~l~----~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~t~~~~ 243 (362)
T 2c0r_A 182 -----PFD--------LNQFGLVYAGAQKNLGPSGVTVVI----VREDLVAESPKHLP-TMLRYDTYVKNNSLYNTPPSF 243 (362)
T ss_dssp -----CCC--------GGGCSEEEEETTTTTCCSSCEEEE----EEGGGSSSCCTTSC-GGGCHHHHHHTTTCSSCCCHH
T ss_pred -----ccc--------hhHCcEEEEeccccccCcCcEEEE----EcHHHHhhccccCc-hHHhHHHHhhccCcCCCchHH
Confidence 011 112389999999999833312110 00111 110000 00000000 0011111 1
Q ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHH
Q psy11047 529 RALKLWFVIRNFGIK-GLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 607 (943)
Q Consensus 529 rALklW~tLr~~G~~-Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA 607 (943)
....+..+++.+... ++.+..++ ..+++
T Consensus 244 ~~~a~~~al~~~~~~~~~~~~~~~---------------------------------------------------~~~~~ 272 (362)
T 2c0r_A 244 GIYMVNEVLKWIEERGGLEGVQQA---------------------------------------------------NRKKA 272 (362)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHH---------------------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHH---------------------------------------------------HHHHH
Confidence 112222233322222 33333333 35678
Q ss_pred HHHHHHHhCCCCe-EEecC---CCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHH
Q psy11047 608 QKFEALVLGDPRF-EIPAA---RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 608 ~~l~~~L~~~p~~-eIl~~---~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ 683 (943)
+++.+.|.+.+++ ++..+ +..++++|++++ .....++.++|.++|. .+.+. ....+.+|++++..++++|+++
T Consensus 273 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~gi-~~~~g-~~~~~~iRis~~~~~~~e~i~~ 349 (362)
T 2c0r_A 273 SLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS-EELEKEFVKASEQEGF-VGLKG-HRSVGGLRASIYNAVPYESCEA 349 (362)
T ss_dssp HHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC-HHHHHHHHHHHHHTTE-ESCBC-CTTTCSEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHcCCccccCCChHHcCCcEEEEEcCC-cchHHHHHHHHHHCCC-eeccC-CCCCCEEEEECCCCCCHHHHHH
Confidence 8888889888656 77543 235678888763 2235788888988886 33321 1123569999999999999999
Q ss_pred HHHHHHHHHH
Q psy11047 684 DWNEIRNTAT 693 (943)
Q Consensus 684 ll~~I~~~~~ 693 (943)
+++.|+++.+
T Consensus 350 l~~~l~~~~~ 359 (362)
T 2c0r_A 350 LVQFMEHFKR 359 (362)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=149.68 Aligned_cols=302 Identities=10% Similarity=0.055 Sum_probs=183.1
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..+...++|..+++++++++|.+.. -+++++||+|+..++.++. .+| -.|
T Consensus 63 ~~~~~~~l~~~~r~~la~~~g~~~~-----------~i~~~sGt~a~~~a~~~~~----------~~g---------d~V 112 (405)
T 2vi8_A 63 GCEYVDIVEELARERAKQLFGAEHA-----------NVQPHSGAQANMAVYFTVL----------EHG---------DTV 112 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEE-----------ECCCSSHHHHHHHHHHHHC----------CTT---------CEE
T ss_pred cchHHHHHHHHHHHHHHHHhCCCce-----------EEEecCcHHHHHHHHHHhc----------CCC---------CEE
Confidence 4467788999999999999998742 3455666999998877641 122 236
Q ss_pred EecCCCchHHHH-HH---HHCC-ccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 305 YCSDQAHSSVEK-AG---LIGL-VNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 305 ~~S~~aHySv~K-Aa---~LG~-~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
+++..+|.+... ++ ..|. ..++.++++ +++.+|+++|+++|+... +.+|+. ..++.|...|+++|.+
T Consensus 113 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~--~~~~~~~~~~l~~i~~ 185 (405)
T 2vi8_A 113 LGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHR-----PKLIVA--AAAAYPRIIDFAKFRE 185 (405)
T ss_dssp EEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHHHHHH
T ss_pred EEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhcC-----CeEEEE--eCCCCCccCCHHHHHH
Confidence 666778877643 11 2232 256667765 678999999999998631 334444 2345677778999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhcc
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK 458 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~ 458 (943)
+|++||+ |+++|++|+.+ .+ +.
T Consensus 186 --------------------l~~~~~~-------~li~Dea~~~g-~~--~~---------------------------- 207 (405)
T 2vi8_A 186 --------------------IADEVGA-------YLMVDMAHIAG-LV--AA---------------------------- 207 (405)
T ss_dssp --------------------HHHHHTC-------EEEEECTTTHH-HH--HT----------------------------
T ss_pred --------------------HHHHcCC-------EEEEEcccccc-cc--cc----------------------------
Confidence 9999999 99999999732 11 00
Q ss_pred CcccccchhhhhcCCCCeeEEEEcCCCccC-ccCcchhhhhcccCccc---cccCCCCcccccCccccCCCCCc-chHHH
Q psy11047 459 GRLHCVPASLRIQGLGRAQNFTIVPSSLLR-VKNSGALHRTFNVEPLY---LRHENSGLAIDYMHWQIPLSKRF-RALKL 533 (943)
Q Consensus 459 G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-vr~~~~L~~af~~~p~Y---L~~~~~g~~~d~~~~tie~SRrf-rALkl 533 (943)
+ ..+ .+++.+|.++.++||+++ ... +.+. ..+.. +.... ..+.. ++-.. ....+
T Consensus 208 ~--~~~------~~~~~~di~~~s~sK~~~g~~g-G~~~----~~~~~~~~l~~~~-------~~~~~-~~~~~~~~aa~ 266 (405)
T 2vi8_A 208 G--LHP------NPVPYAHFVTTTTHKTLRGPRG-GMIL----CQEQFAKQIDKAI-------FPGIQ-GGPLMHVIAAK 266 (405)
T ss_dssp T--SSC------CSTTTCSEEEEESSSTTCCCSC-EEEE----ECHHHHHHHHHHH-------TTTTC-SSCCHHHHHHH
T ss_pred C--cCC------CccccCCEEEEeccccCCCCCC-eEEE----EcHHHHHHHHhhh-------ccccc-CCCCHHHHHHH
Confidence 0 000 112357999999999987 322 2221 00111 11000 00111 11111 11122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHH
Q psy11047 534 WFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL 613 (943)
Q Consensus 534 W~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~ 613 (943)
..+++.+...++.+.+++ ..++++++.+.
T Consensus 267 ~~al~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~l~~~ 295 (405)
T 2vi8_A 267 AVAFGEALQDDFKAYAKR---------------------------------------------------VVDNAKRLASA 295 (405)
T ss_dssp HHHHHHHHSHHHHHHHHH---------------------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH---------------------------------------------------HHHHHHHHHHH
Confidence 223333222344444443 24567777777
Q ss_pred HhCCCCeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEEeecc-------cCCCcEEEEeecC----CCCHHHH
Q psy11047 614 VLGDPRFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS-------LRIQGLGRAQNFT----RTTNDDI 681 (943)
Q Consensus 614 L~~~p~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~-------~~g~~~lR~v~~~----~tt~edI 681 (943)
|++. ++++..+ ...+++.+++.........+.+.|.++|.+ +.+.. ..+...+|+++.. .++++|+
T Consensus 296 L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~-v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i 373 (405)
T 2vi8_A 296 LQNE-GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGIT-VNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEM 373 (405)
T ss_dssp HHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEE-CEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHH
T ss_pred HHhC-CCeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCce-eccCcCccccCCCCCCCceEEeeeeeeecCCCHHHH
Confidence 8777 8888765 357888888863211245677788777754 44321 1134579996654 6789999
Q ss_pred HHHHHHHHHHHHHH
Q psy11047 682 TRDWNEIRNTATEI 695 (943)
Q Consensus 682 d~ll~~I~~~~~~l 695 (943)
+++++.|+++..++
T Consensus 374 ~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 374 DEIAAIIGLVLKNV 387 (405)
T ss_dssp HHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999886554
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-12 Score=144.16 Aligned_cols=155 Identities=10% Similarity=-0.023 Sum_probs=105.5
Q ss_pred HHHHHHHHHhcc-CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhh
Q psy11047 208 LGDMLSDAINCL-GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKY 286 (943)
Q Consensus 208 lgd~L~~alN~n-~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~ 286 (943)
+.+.+...+... ...|...+...+++..+.+++.+. |.+-. ....++|+|||+|+..++.+..
T Consensus 76 v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~--------~~~v~~t~g~t~al~~~~~~l~------- 139 (427)
T 3dyd_A 76 VTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-EAPLE--------AKDVILTSGCSQAIDLCLAVLA------- 139 (427)
T ss_dssp HHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBT-TBCCC--------GGGEEEESSHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhc-CCCCC--------hHHEEEecCcHHHHHHHHHHhc-------
Confidence 334444444332 223434444555655554444332 22211 1368999999999988876532
Q ss_pred cccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCC
Q psy11047 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLAL 364 (943)
Q Consensus 287 ~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGT 364 (943)
.+| -.|+++.-+|.....++...+.+++.++.+ .++.+|+++|+++|++. +.+|+.+...
T Consensus 140 ---~~g---------d~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~ 201 (427)
T 3dyd_A 140 ---NPG---------QNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEK------TACLIVNNPS 201 (427)
T ss_dssp ---CTT---------CEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTT------EEEEEEESSC
T ss_pred ---CCC---------CEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccC------CCEEEEECCC
Confidence 122 246777788888887775444477777765 46789999999888653 5677777888
Q ss_pred Cccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 365 PAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 365 T~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+|.+-| +++|++ +|++||+ ++++|.+|+++
T Consensus 202 nptG~~~~~~~l~~i~~--------------------~~~~~~~-------~~i~Deay~~~ 236 (427)
T 3dyd_A 202 NPCGSVFSKRHLQKILA--------------------VAARQCV-------PILADEIYGDM 236 (427)
T ss_dssp TTTCCCCCHHHHHHHHH--------------------HHHHTTC-------CEEEECTTTTC
T ss_pred CCCCCCCCHHHHHHHHH--------------------HHHHCCC-------EEEEEcCchhh
Confidence 99999988 888888 9999999 99999999886
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.49 E-value=9.6e-12 Score=135.23 Aligned_cols=291 Identities=10% Similarity=-0.025 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
..+++..+.+|+.+.+|++.. ....++|+|||+++..++.+.. .+| -.|++++
T Consensus 71 ~~~l~~~la~~l~~~~g~~~~--------~~~v~~~~G~~~al~~~~~~l~----------~~g---------d~Vl~~~ 123 (369)
T 3cq5_A 71 AVELRDELAAYITKQTGVAVT--------RDNLWAANGSNEILQQLLQAFG----------GPG---------RTALGFQ 123 (369)
T ss_dssp CHHHHHHHHHHHHHHHCCCCC--------GGGEEEESHHHHHHHHHHHHHC----------STT---------CEEEEEE
T ss_pred HHHHHHHHHHhhhhcccCCCC--------hHhEEECCChHHHHHHHHHHhc----------CCC---------CEEEEcC
Confidence 368999999999998876522 1268999999999877765431 122 2467778
Q ss_pred CCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~ 388 (943)
.+|.++..++...+.+++.+|.++++.+|+++|+++++.. .+.+|+.+...+.+|.+-|++++.+
T Consensus 124 ~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~---------- 188 (369)
T 3cq5_A 124 PSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVER---------- 188 (369)
T ss_dssp SSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHH----------
T ss_pred CChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHH----------
Confidence 8999988887544457888998888899999999999762 1456666788888999999999999
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhh
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL 468 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~ 468 (943)
+|+.+++ ++++|.+|+++ .+. .....
T Consensus 189 ----------l~~~~~~-------~li~De~~~~~-~~~------------------------------------~~~~~ 214 (369)
T 3cq5_A 189 ----------IINVAPG-------IVIVDEAYAEF-SPS------------------------------------PSATT 214 (369)
T ss_dssp ----------HHHHCSS-------EEEEECTTGGG-CCS------------------------------------CCGGG
T ss_pred ----------HHHhCCC-------EEEEECCchhh-cCC------------------------------------cchHH
Confidence 9999999 99999999876 220 00011
Q ss_pred hhcCCCCeeEEEEcCCCccCccC---cchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHH-H
Q psy11047 469 RIQGLGRAQNFTIVPSSLLRVKN---SGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIK-G 544 (943)
Q Consensus 469 ~l~Gie~ADSItiDpHK~L~vr~---~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~-G 544 (943)
.+......+-+..++||+++... ...+ ..+..+..-... ...|+ ...+..++....+-.. .
T Consensus 215 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~-----~~~~~~~~l~~~----~~~~~------~~~~~~~a~~~~l~~~~~ 279 (369)
T 3cq5_A 215 LLEKYPTKLVVSRTMSKAFDFAGGRLGYFV-----ANPAFIDAVMLV----RLPYH------LSALSQAAAIVALRHSAD 279 (369)
T ss_dssp GTTTCTTTEEEEEESSSTTSCGGGCCEEEE-----ECTHHHHHHHTT----SCTTC------SCHHHHHHHHHHHHTHHH
T ss_pred HHhhCCCCEEEEEechHhcCCcccceEEEE-----eCHHHHHHHHHc----CCCCC------CCHHHHHHHHHHhcCHHH
Confidence 11111114578889999997321 1111 011111000000 00011 2233334333333211 1
Q ss_pred HHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEec
Q psy11047 545 LQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPA 624 (943)
Q Consensus 545 l~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~ 624 (943)
+.+..++ ..++++++.+.|++ +++++.
T Consensus 280 ~~~~~~~---------------------------------------------------~~~~~~~l~~~L~~-~g~~~~- 306 (369)
T 3cq5_A 280 TLGTVEK---------------------------------------------------LSVERVRVAARLEE-LGYAVV- 306 (369)
T ss_dssp HHTHHHH---------------------------------------------------HHHHHHHHHHHHHH-HTCEEE-
T ss_pred HHHHHHH---------------------------------------------------HHHHHHHHHHHHHh-CCCEEC-
Confidence 1111111 23455666666665 367776
Q ss_pred CCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 625 ARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 625 ~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
++..+++.|++. .+ ..++.++|.++|. ++.+. ....++|++++ +++|++++++.|+++.
T Consensus 307 ~~~~~~~~~~~~-~~--~~~l~~~l~~~gi-~v~~~--~~~~~iRis~~---~~~~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 307 PSESNFVFFGDF-SD--QHAAWQAFLDRGV-LIRDV--GIAGHLRTTIG---VPEENDAFLDAAAEII 365 (369)
T ss_dssp CCSSSEEEEECC-SS--HHHHHHHHHHTTE-ECBCC--SCTTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECC-CC--HHHHHHHHHHCCE-EEEEC--CCCCeEEEEeC---CHHHHHHHHHHHHHHH
Confidence 556778888875 22 4678888887775 44443 23578999765 7899999999988764
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-13 Score=161.74 Aligned_cols=131 Identities=9% Similarity=-0.027 Sum_probs=95.4
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+.+|+++|.+. ..++++|+|+||..++.+.. .+| -.|+++..+|.|+
T Consensus 177 e~e~~lA~~~gae~-----------~i~v~nGtt~an~~ai~al~----------~pG---------D~VLv~~~~H~S~ 226 (730)
T 1c4k_A 177 AAEKHAARVYNADK-----------TYFVLGGSSNANNTVTSALV----------SNG---------DLVLFDRNNHKSV 226 (730)
T ss_dssp HHHHHHHHHTTCSE-----------EEEESSHHHHHHHHHHHHHC----------CTT---------CEEEEETTCCHHH
T ss_pred HHHHHHHHHHCCCc-----------EEEECCHHHHHHHHHHHHhc----------CCC---------CEEEEcCCchHHH
Confidence 34567799999864 35678888899988876531 122 2578899999999
Q ss_pred HHH-HHHCCccEEEEecCCC-----CCcCHHHH-----HHHHHHh-hcc--CCCc-EEEEEecCCCcccccccHHHhhhh
Q psy11047 315 EKA-GLIGLVNMRYIESDDK-----LSLRGDKL-----IEAIERD-KKK--HLIP-FFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 315 ~KA-a~LG~~~v~~Vp~D~~-----grmD~daL-----e~aI~~d-~~k--G~~P-~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
..+ +.+.+..++.++.+.+ |.+|+++| +++|++. ... ...| .+++++.+ |.+|.+.|+++|++
T Consensus 227 ~~~~~~l~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~- 304 (730)
T 1c4k_A 227 YNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVK- 304 (730)
T ss_dssp HHHHTTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHH-
T ss_pred HHHHHHHCCCEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHH-
Confidence 998 5565557777766422 55888888 7777653 110 1123 56777776 46899999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++|+|+||++.
T Consensus 305 -------------------la~~~g~-------~livDeAh~~~ 322 (730)
T 1c4k_A 305 -------------------RIGHLCD-------YIEFDSAWVGY 322 (730)
T ss_dssp -------------------HHGGGBS-------EEEEECTTCCG
T ss_pred -------------------HHHHcCC-------eEEEEcccccc
Confidence 9999999 99999999864
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-13 Score=146.73 Aligned_cols=156 Identities=12% Similarity=0.011 Sum_probs=115.0
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCC-cEEEcCChHHHHHHHHHHHHHHHHHhh
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPG-GGVLQTTASESTLICLLAGRTEAIRKY 286 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~-~GvfTsGGTeANL~AL~aAR~~~l~~~ 286 (943)
+.+.+...++.....|...+...+++..+.+|+.+.+|++.. .. ..++|+|||+|+..++.+..
T Consensus 43 v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~--------~~~~v~~t~g~~~al~~~~~~~~------- 107 (411)
T 2o0r_A 43 MLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYD--------PETEVLVTVGATEAIAAAVLGLV------- 107 (411)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC--------TTTSEEEEEHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCC--------CCceEEEeCCHHHHHHHHHHHhc-------
Confidence 445555555432234444444678999999999999997532 12 68999999999988876531
Q ss_pred cccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC---CCCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD---KLSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 287 ~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~---~grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.+| -.|+++..+|.++..++...+.+++.++.+. .+.+|+++|+++|+.+ +.+|+.+..
T Consensus 108 ---~~g---------d~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~~ 169 (411)
T 2o0r_A 108 ---EPG---------SEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPR------TRALIINSP 169 (411)
T ss_dssp ---CTT---------CEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTT------EEEEEEESS
T ss_pred ---CCC---------CEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccC------ceEEEEeCC
Confidence 122 2467778899998887755445788888764 3679999999988642 567777778
Q ss_pred CCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+.+|.+-| +++|.+ +|++||+ ++++|.+|+++
T Consensus 170 ~nptG~~~~~~~l~~i~~--------------------~~~~~~~-------~li~De~~~~~ 205 (411)
T 2o0r_A 170 HNPTGAVLSATELAAIAE--------------------IAVAANL-------VVITDEVYEHL 205 (411)
T ss_dssp CTTTCCCCCHHHHHHHHH--------------------HHHHTTC-------EEEEECTTTTC
T ss_pred CCCCCCCCCHHHHHHHHH--------------------HHHHcCC-------EEEEEcccccc
Confidence 888998855 578888 9999999 99999999876
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-12 Score=140.40 Aligned_cols=145 Identities=12% Similarity=0.070 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
....+++..+.+|+.+..|..-.. .....+||+|||+||..++.+.+ .+| -.|++
T Consensus 86 ~g~~~l~~~la~~~~~~~~~~~~~------~~~~v~~~~gg~~a~~~~~~~l~----------~~g---------d~vl~ 140 (435)
T 3piu_A 86 HGLPAFKKAMVDFMAEIRGNKVTF------DPNHLVLTAGATSANETFIFCLA----------DPG---------EAVLI 140 (435)
T ss_dssp TCCHHHHHHHHHHHHHHTTTSSCC------CGGGEEEEEHHHHHHHHHHHHHC----------CTT---------CEEEE
T ss_pred CCcHHHHHHHHHHHHHhhCCCCCC------CHHHEEEcCChHHHHHHHHHHhc----------CCC---------CeEEE
Confidence 345788888988888877632110 01368999999999988876532 122 24677
Q ss_pred cCCCchHHHHHHH-HCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhc
Q psy11047 307 SDQAHSSVEKAGL-IGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAM 380 (943)
Q Consensus 307 S~~aHySv~KAa~-LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~ 380 (943)
.+-.|.++..++. ..+.+++.++.+. .+.+|+++|+++|++...++..+.+|+.+..++.+|.+-| +++|.+
T Consensus 141 ~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~-- 218 (435)
T 3piu_A 141 PTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLS-- 218 (435)
T ss_dssp EESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHH--
T ss_pred CCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHH--
Confidence 7888998888775 5555888898875 4568999999999876555545778888888888998855 567777
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+++|.+|+++
T Consensus 219 ------------------~~~~~~~-------~li~Dea~~~~ 236 (435)
T 3piu_A 219 ------------------FVEDKGI-------HLISDEIYSGT 236 (435)
T ss_dssp ------------------HHHHHTC-------EEEEECTTGGG
T ss_pred ------------------HHHHcCC-------EEEEecccccc
Confidence 9999999 99999999875
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.1e-12 Score=136.84 Aligned_cols=293 Identities=9% Similarity=-0.040 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
....++.+.+++++|.++ .+++++||+|+..++.+.. .+| -.|+++...
T Consensus 84 ~~~~~l~~~la~~~g~~~------------~i~~~sGt~a~~~~~~~~~----------~~g---------d~v~~~~~~ 132 (384)
T 1bs0_A 84 VVHQALEEELAEWLGYSR------------ALLFISGFAANQAVIAAMM----------AKE---------DRIAADRLS 132 (384)
T ss_dssp HHHHHHHHHHHHHHTCSE------------EEEESCHHHHHHHHHHHHC----------CTT---------CEEEEETTC
T ss_pred HHHHHHHHHHHHHhCCCc------------EEEeCCcHHHHHHHHHHhC----------CCC---------cEEEEcccc
Confidence 344456677788888752 5777778999988775421 122 246788899
Q ss_pred chHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccc
Q psy11047 311 HSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 311 HySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i 390 (943)
|.+...++.+.+.+++.+|. +|+++|++.|++... .+.+|+.....+.+|.+.|+++|.+
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~---~~~~v~~~~~~nptG~~~~l~~i~~------------ 192 (384)
T 1bs0_A 133 HASLLEAASLSPSQLRRFAH-----NDVTHLARLLASPCP---GQQMVVTEGVFSMDGDSAPLAEIQQ------------ 192 (384)
T ss_dssp CHHHHHHHHTSSSEEEEECT-----TCHHHHHHHHHSCCS---SCEEEEEESBCTTTCCBCCHHHHHH------------
T ss_pred cHHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHhcCC---CCeEEEEeCCCCCCCCccCHHHHHH------------
Confidence 99998888654557777774 579999999876421 2466776667788999999999999
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhh
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRI 470 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l 470 (943)
+|++||+ |+++|++|+-+ .+. . +| ......+
T Consensus 193 --------l~~~~~~-------~li~De~~~~~-~~~-~----------------------------~~----~~~~~~~ 223 (384)
T 1bs0_A 193 --------VTQQHNG-------WLMVDDAHGTG-VIG-E----------------------------QG----RGSCWLQ 223 (384)
T ss_dssp --------HHHHTTC-------EEEEECTTTTT-TSS-G----------------------------GG----CCHHHHT
T ss_pred --------HHHHcCc-------EEEEECCcccc-eec-C----------------------------CC----CchHHhc
Confidence 9999999 99999999754 210 0 00 0000111
Q ss_pred cCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHH---HHHHHHHHHHHH
Q psy11047 471 QGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWF---VIRNFGIKGLQK 547 (943)
Q Consensus 471 ~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~---tLr~~G~~Gl~~ 547 (943)
+ ...|.++.++||+++... +.+. ..+..+..-.. ....|.... ....+.++. +++.+....+.+
T Consensus 224 -~-~~~di~~~s~sK~~~~~G-G~~~----~~~~~~~~l~~----~~~~~~~~~--~~~~~~~~~~~~al~~~~~~~~~~ 290 (384)
T 1bs0_A 224 -K-VKPELLVVTFGKGFGVSG-AAVL----CSSTVADYLLQ----FARHLIYST--SMPPAQAQALRASLAVIRSDEGDA 290 (384)
T ss_dssp -T-CCCSEEEEESSSTTSSCC-EEEE----ECHHHHHHHHH----HCHHHHSSB--CCCHHHHHHHHHHHHHHHSHHHHH
T ss_pred -C-CCCcEEEeeccchhhccC-cEEE----eCHHHHHHHHH----hchhhhcCC--CCCHHHHHHHHHHHHHHhccccHH
Confidence 2 247889999999998432 2110 01111100000 000010000 111222222 222221001122
Q ss_pred HHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCC
Q psy11047 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 627 (943)
Q Consensus 548 ~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~ 627 (943)
..++ ..++++++.+.|++. ++++. ++.
T Consensus 291 ~~~~---------------------------------------------------~~~~~~~l~~~L~~~-g~~~~-~~~ 317 (384)
T 1bs0_A 291 RREK---------------------------------------------------LAALITRFRAGVQDL-PFTLA-DSC 317 (384)
T ss_dssp HHHH---------------------------------------------------HHHHHHHHHHHHTTS-SCEEC-SCC
T ss_pred HHHH---------------------------------------------------HHHHHHHHHHHHHhc-CCccc-CCC
Confidence 2222 245677888888876 67776 356
Q ss_pred ccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc----CCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL----RIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~----~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
.+++.++++. .....++.++|.++|. .+.+... .+..++|++++..+++++++++++.|+++
T Consensus 318 ~~~~~~~~~~-~~~~~~l~~~l~~~gi-~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 318 SAIQPLIVGD-NSRALQLAEKLRQQGC-WVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp SSBCCEEEES-HHHHHHHHHHHHHTTE-ECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCC-HHHHHHHHHHHHHCCc-EEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 6777777753 1235678888888874 4544322 23478999888889999999999998875
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-12 Score=142.95 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
..+++..+.+|+.+.+|++... +....++|+|||+++..++.+.. .+| -.|+++.
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~------~~~~i~~~~G~~~ai~~~~~~~~----------~~g---------d~Vl~~~ 139 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRF------DPERVVMAGGATGANETIIFCLA----------DPG---------DAFLVPS 139 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCC------CTTSCEEEEHHHHHHHHHHHHHC----------CTT---------CEEEEES
T ss_pred cHHHHHHHHHHHHHhcCCCCCC------ChhhEEEccChHHHHHHHHHHhC----------CCC---------CeEEEcc
Confidence 6788999999999888854110 01357899999999988876532 122 2466778
Q ss_pred CCchHHHHHH-HHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccc
Q psy11047 309 QAHSSVEKAG-LIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIV 382 (943)
Q Consensus 309 ~aHySv~KAa-~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~ 382 (943)
-+|.+...++ .+.+..++.+|.+. .+.+|+++|+++|+.....+..+.+|+.+..++.+|.+-| +++|.+
T Consensus 140 p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~---- 215 (428)
T 1iay_A 140 PYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLS---- 215 (428)
T ss_dssp SCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHH----
T ss_pred CCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHH----
Confidence 8888877755 34445788888863 4579999999999875444434677777778888999988 888888
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.+|+++
T Consensus 216 ----------------~~~~~~~-------~li~Dea~~~~ 233 (428)
T 1iay_A 216 ----------------FTNQHNI-------HLVCDEIYAAT 233 (428)
T ss_dssp ----------------HHHTTTC-------EEEEECTTGGG
T ss_pred ----------------HHHHCCe-------EEEEecccccc
Confidence 9999999 99999999875
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.9e-12 Score=138.50 Aligned_cols=339 Identities=13% Similarity=0.006 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHhcc---CccccCChhHHHHHHHHHHHHHHHhCCC-ccccccCcCCCCcEEEcCChHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINCL---GFTWASSPACTELEIITMNWLGKMIGLP-EEFLHTKVDSPGGGVLQTTASESTLICLLAGRT 280 (943)
Q Consensus 205 ~silgd~L~~alN~n---~~~~~~SPaateLE~~Vi~wLa~LlG~p-~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~ 280 (943)
+..+.+.+...++.+ ...|...+...+++..+.+|+.+.+|++ .. ....++|+|||+|+..++.+..
T Consensus 60 ~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~--------~~~v~~t~G~~~al~~~~~~l~- 130 (425)
T 1vp4_A 60 RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLD--------EDNLIFTVGSQQALDLIGKLFL- 130 (425)
T ss_dssp HHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCC--------GGGEEEEEHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCC--------cccEEEeccHHHHHHHHHHHhC-
Confidence 344555555555432 1334444456788888888888877854 21 0268999999999987766431
Q ss_pred HHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhcc--CCCcEEE
Q psy11047 281 EAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKK--HLIPFFI 358 (943)
Q Consensus 281 ~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~k--G~~P~~V 358 (943)
.+| -.|++.+-+|.+...++...+.+++.+|.++++ +|+++|+++|+....+ +..+.+|
T Consensus 131 ---------~~g---------d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v 191 (425)
T 1vp4_A 131 ---------DDE---------SYCVLDDPAYLGAINAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFI 191 (425)
T ss_dssp ---------CTT---------CEEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred ---------CCC---------CEEEEeCCCcHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEE
Confidence 122 246677788999888875444578888887766 9999999999863211 1125565
Q ss_pred -EEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcccccccccc
Q psy11047 359 -FSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHL 434 (943)
Q Consensus 359 -VaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~L 434 (943)
+.+...+.+|.+-| +++|.+ +|++||+ |+++|.+|+++ .+.
T Consensus 192 ~~~~~~~nptG~~~~~~~l~~l~~--------------------~~~~~~~-------~li~De~~~~~-~~~------- 236 (425)
T 1vp4_A 192 YVVSNFHNPAGVTTSLEKRKALVE--------------------IAEKYDL-------FIVEDDPYGAL-RYE------- 236 (425)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHH--------------------HHHHTTC-------EEEEECSSTTC-BCS-------
T ss_pred EECCCCCCCCCCcCCHHHHHHHHH--------------------HHHHcCC-------EEEEECCCccc-cCC-------
Confidence 46677788898866 567777 9999999 99999999876 320
Q ss_pred ceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccC---cchhhhhcccCccccccCCC
Q psy11047 435 GMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKN---SGALHRTFNVEPLYLRHENS 511 (943)
Q Consensus 435 g~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~---~~~L~~af~~~p~YL~~~~~ 511 (943)
|. ....... +. ....+-+..++||+++ .. ...+ ..+..+..-..
T Consensus 237 ------------------------g~-~~~~~~~-~~-~~~~~i~~~s~sK~~~-~G~r~G~~~-----~~~~~~~~l~~ 283 (425)
T 1vp4_A 237 ------------------------GE-TVDPIFK-IG-GPERVVLLNTFSKVLA-PGLRIGMVA-----GSKEFIRKIVQ 283 (425)
T ss_dssp ------------------------SC-CCCCHHH-HH-CTTTEEEEEESTTTTC-GGGCEEEEE-----CCHHHHHHHHH
T ss_pred ------------------------CC-CCcCHHH-hC-CCCCEEEEeccccccc-cccceEEEe-----eCHHHHHHHHH
Confidence 00 0011111 11 1223567789999987 21 1111 01111100000
Q ss_pred CcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCc
Q psy11047 512 GLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFP 591 (943)
Q Consensus 512 g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~ 591 (943)
... .++.. ...+..++....+....+.+.+++..+ .
T Consensus 284 --~~~--~~~~~----~~~~~~~a~~~~l~~~~~~~~~~~~~~-----------------------~------------- 319 (425)
T 1vp4_A 284 --AKQ--SADLC----SPAITHRLAARYLERYDLLEQLKPTIE-----------------------L------------- 319 (425)
T ss_dssp --HHH--HHHSS----CCHHHHHHHHHHHHHSCHHHHTHHHHH-----------------------H-------------
T ss_pred --Hhh--hhcCC----CCHHHHHHHHHHHhcCCHHHHHHHHHH-----------------------H-------------
Confidence 000 00110 123334444444322112223333110 0
Q ss_pred ccccccCCcHHHHHHHHHHHHHHhC-CC---CeEEecCCCccEEEEEecC-CChHHHHHHHHHhccCcEEEeecc-c---
Q psy11047 592 NFILSYFPKFQSVRLAQKFEALVLG-DP---RFEIPAARHLGMVVIRLLG-ENILTEKLLKRLNSKGRLHCVPAS-L--- 662 (943)
Q Consensus 592 ~~~~~~~p~~~~~~LA~~l~~~L~~-~p---~~eIl~~~~l~iV~Fr~~g-~n~l~~~Ll~~L~~~G~~~~s~t~-~--- 662 (943)
..+.++++.+.|++ .| ++++..+...+.+.++++. .+ ..++.+.|.++|. ++.+.. .
T Consensus 320 -----------~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~--~~~l~~~l~~~gi-~v~~g~~f~~~ 385 (425)
T 1vp4_A 320 -----------YRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFD--TWEMFEYAKRKKV-FYVPGRVFKVY 385 (425)
T ss_dssp -----------HHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCC--TTTTHHHHHHHTE-ECEEGGGGCTT
T ss_pred -----------HHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCCC--HHHHHHHHHHCCC-EEECchhhcCC
Confidence 12445566666655 34 6888766666678888863 22 3467777777775 444422 2
Q ss_pred -CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 663 -RIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 663 -~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
.+..++|++++.. ++++++++++.|.++..++.++
T Consensus 386 ~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~~~~ 421 (425)
T 1vp4_A 386 DEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEYGKE 421 (425)
T ss_dssp CCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHHhh
Confidence 2457999976654 8999999999999887665443
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-12 Score=142.68 Aligned_cols=124 Identities=6% Similarity=-0.026 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
....++.+++++++|.+ ..+++++||+|+..++.+.. .+| -.|+++..+
T Consensus 64 ~~~~~l~~~la~~~g~~------------~~i~~~sG~~a~~~~l~~~~----------~~g---------d~vi~~~~~ 112 (398)
T 2rfv_A 64 PTTDALEKKLAVLERGE------------AGLATASGISAITTTLLTLC----------QQG---------DHIVSASAI 112 (398)
T ss_dssp HHHHHHHHHHHHHHTCS------------EEEEESSHHHHHHHHHHHHC----------CTT---------CEEEEESSS
T ss_pred hHHHHHHHHHHHHhCCC------------cEEEECCHHHHHHHHHHHHh----------CCC---------CEEEEcCCC
Confidence 33445667888999875 25788889999988877641 122 247788899
Q ss_pred chHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccc
Q psy11047 311 HSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLG 386 (943)
Q Consensus 311 HySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~ 386 (943)
|.++..++ ...+..++.++.+ |+++|+++|+++ +.+|+.+..++.+|.+.|+++|++
T Consensus 113 ~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~-------- 173 (398)
T 2rfv_A 113 YGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMRPE------TKVVYIETPANPTLSLVDIETVAG-------- 173 (398)
T ss_dssp CHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTT------EEEEEEESSBTTTTBCCCHHHHHH--------
T ss_pred cccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHH--------
Confidence 99988765 3344578888875 799999888653 678888888899999999999999
Q ss_pred cccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 387 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 387 ~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+|+|++|+..
T Consensus 174 ------------l~~~~~~-------~li~De~~~~~ 191 (398)
T 2rfv_A 174 ------------IAHQQGA-------LLVVDNTFMSP 191 (398)
T ss_dssp ------------HHHHTTC-------EEEEECTTTCT
T ss_pred ------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999865
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-12 Score=140.93 Aligned_cols=131 Identities=15% Similarity=0.085 Sum_probs=101.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
+..+|...++|. .+++++|.+ .+++|+|||+|+..++.+++- .+| -
T Consensus 31 ~~~~~~~~~l~~----~la~~~~~~------------~~~~~~sGt~al~~al~~~~~---------~~g---------d 76 (367)
T 3nyt_A 31 YILGPEVTELED----RLADFVGAK------------YCISCANGTDALQIVQMALGV---------GPG---------D 76 (367)
T ss_dssp CSSCHHHHHHHH----HHHHHHTCS------------EEEEESCHHHHHHHHHHHTTC---------CTT---------C
T ss_pred ccCChHHHHHHH----HHHHHhCCC------------cEEEeCCHHHHHHHHHHHhCC---------CCc---------C
Confidence 345666666665 557777764 379999999999988876420 122 3
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
.|+++..+|.++..++...+.+++.++++.+ +.+|+++|+++|+++ +.+|+ .++.+|...|+++|.+
T Consensus 77 ~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~---~~~~~G~~~~~~~i~~--- 144 (367)
T 3nyt_A 77 EVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPR------TKAII---PVSLYGQCADFDAINA--- 144 (367)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTT------EEEEC---CBCGGGCCCCHHHHHH---
T ss_pred EEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcC------CcEEE---eeCCccChhhHHHHHH---
Confidence 4788899999999988654458889998865 899999999988543 44555 4567899999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++|+|++++.+
T Consensus 145 -----------------la~~~~~-------~li~D~a~~~g 162 (367)
T 3nyt_A 145 -----------------IASKYGI-------PVIEDAAQSFG 162 (367)
T ss_dssp -----------------HHHHTTC-------CBEEECTTTTT
T ss_pred -----------------HHHHcCC-------EEEEECccccC
Confidence 9999999 99999999744
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-12 Score=140.43 Aligned_cols=284 Identities=14% Similarity=0.055 Sum_probs=179.3
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++| +.+++++|.+ ..++|+|||+||..++.+.. .+| -.|
T Consensus 64 ~~~~~~~l~----~~la~~~g~~------------~~~~~~sGt~A~~~al~~~~----------~~g---------d~V 108 (392)
T 3qhx_A 64 GNPTRTALE----AALAAVEDAA------------FGRAFSSGMAAADCALRAML----------RPG---------DHV 108 (392)
T ss_dssp CCHHHHHHH----HHHHHHTTCS------------EEEEESSHHHHHHHHHHHHC----------CTT---------CEE
T ss_pred CChHHHHHH----HHHHHHhCCC------------cEEEECCHHHHHHHHHHHHh----------CCC---------CEE
Confidence 445555444 5668888874 36899999999988877541 122 247
Q ss_pred EecCCCchHHHHHH-H---HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG-L---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa-~---LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++..+|.+....+ . ..+..+..++.+ |+++|+++|+++ +.+|+....++.+|.+.|+++|++
T Consensus 109 i~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~-- 175 (392)
T 3qhx_A 109 VIPDDAYGGTFRLIDKVFTGWNVEYTPVALA-----DLDAVRAAIRPT------TRLIWVETPTNPLLSIADIAGIAQ-- 175 (392)
T ss_dssp EEETTCCHHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH--
T ss_pred EEeCCCcchHHHHHHHHHHhcCcEEEEeCCC-----CHHHHHHhhCCC------CeEEEEECCCCCCcEEecHHHHHH--
Confidence 78899998877765 2 223477888875 799999998754 677888888999999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCc
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGR 460 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~ 460 (943)
+|++||+ ++|+|.+|+.+ .+
T Consensus 176 ------------------la~~~g~-------~li~D~~~~~~-~~---------------------------------- 195 (392)
T 3qhx_A 176 ------------------LGADSSA-------KVLVDNTFASP-AL---------------------------------- 195 (392)
T ss_dssp ------------------HHHHHTC-------EEEEECTTTCT-TT----------------------------------
T ss_pred ------------------HHHHcCC-------EEEEECCCccc-cc----------------------------------
Confidence 9999999 99999999755 21
Q ss_pred ccccchhhhhcCCCCeeEEEEcCCCccCccC---cchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHH
Q psy11047 461 LHCVPASLRIQGLGRAQNFTIVPSSLLRVKN---SGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVI 537 (943)
Q Consensus 461 ~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~---~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tL 537 (943)
..... ..+|.++.++||+++... ...+. ..+..+... +..+....+....++..|+.+
T Consensus 196 --~~~~~------~~~di~~~S~sK~lg~~g~~~~G~v~---~~~~~~~~~--------l~~~~~~~g~~~~~~~~~~~~ 256 (392)
T 3qhx_A 196 --QQPLS------LGADVVLHSTTKYIGGHSDVVGGALV---TNDEELDQS--------FAFLQNGAGAVPGPFDAYLTM 256 (392)
T ss_dssp --CCGGG------GTCSEEEEETTTTTTCSSCCCCEEEE---ESCHHHHHH--------HHHHHHHHCCCCCHHHHHHHH
T ss_pred --CChHH------hCCcEEEEcCccccCCCCCceEEEEE---ECcHHHHHH--------HHHHHHhcCCCCCHHHHHHHH
Confidence 11111 146999999999998322 11110 000011000 000000111223455566555
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCC
Q psy11047 538 RNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 617 (943)
Q Consensus 538 r~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~ 617 (943)
+.+ +.+...+++ ..+.++++.+.|++.
T Consensus 257 ~~l--~~l~~~~~~---------------------------------------------------~~~~~~~l~~~L~~~ 283 (392)
T 3qhx_A 257 RGL--KTLVLRMQR---------------------------------------------------HSENAAAVAEFLAEH 283 (392)
T ss_dssp HHH--TTHHHHHHH---------------------------------------------------HHHHHHHHHHHHHTC
T ss_pred hhh--hHHHHHHHH---------------------------------------------------HHHHHHHHHHHHhcC
Confidence 432 233333333 345667777788888
Q ss_pred CCeEEecCC-----------------CccEEEEEecCCChHHHHHHHHHhccCc---------EEEeeccc---------
Q psy11047 618 PRFEIPAAR-----------------HLGMVVIRLLGENILTEKLLKRLNSKGR---------LHCVPASL--------- 662 (943)
Q Consensus 618 p~~eIl~~~-----------------~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~---------~~~s~t~~--------- 662 (943)
|.+.-+..| ..++++|.+++.....+.+++.+...|. +.+.+...
T Consensus 284 ~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~ 363 (392)
T 3qhx_A 284 PAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQ 363 (392)
T ss_dssp TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTB
T ss_pred CCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHHH
Confidence 877544222 1568999998743446777777764431 11222111
Q ss_pred --CCCcEEEEeecCCCCHHHHHHHHHHH
Q psy11047 663 --RIQGLGRAQNFTRTTNDDITRDWNEI 688 (943)
Q Consensus 663 --~g~~~lR~v~~~~tt~edId~ll~~I 688 (943)
-....+|++++..++++.|+.+.++|
T Consensus 364 ~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 364 LEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp CCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 13578999999998888888887665
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-12 Score=140.03 Aligned_cols=299 Identities=13% Similarity=-0.029 Sum_probs=177.6
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
..+.+.+++++|.++ ..++|+| |.+|+.++.+.... .+| -.|+++...|.+
T Consensus 94 ~~l~~~la~~~~~~~-----------~i~~~sG-~~a~~~~~~~l~~~--------~~g---------d~Vl~~~~~~~~ 144 (401)
T 2bwn_A 94 RRLEAEIAGLHQKEA-----------ALVFSSA-YNANDATLSTLRVL--------FPG---------LIIYSDSLNHAS 144 (401)
T ss_dssp HHHHHHHHHHTTCSE-----------EEEESCH-HHHHHHHHHHHHHH--------STT---------CEEEEETTCCHH
T ss_pred HHHHHHHHHHhCCCc-----------EEEECCc-HHHHHHHHHHHhcC--------CCC---------CEEEECchhhHH
Confidence 345667788888653 3556555 55887776543210 122 247778899999
Q ss_pred HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 393 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~ 393 (943)
+..++...+..++.++.+ |+++|++.++.... ..+.+|+.+...+.+|.+.|+++|.+
T Consensus 145 ~~~~~~~~g~~~~~v~~~-----d~~~le~~l~~~~~--~~~~~v~~~~~~nptG~~~~l~~i~~--------------- 202 (401)
T 2bwn_A 145 MIEGIKRNAGPKRIFRHN-----DVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGPIKEICD--------------- 202 (401)
T ss_dssp HHHHHHHSCCCEEEECTT-----CHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCCHHHHHH---------------
T ss_pred HHHHHHHcCCeEEEEcCC-----CHHHHHHHHHhhcc--CCceEEEEecCcCCCCCcCCHHHHHH---------------
Confidence 999886545578888875 78999999875321 13678888999999999999999999
Q ss_pred CchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC
Q psy11047 394 TNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL 473 (943)
Q Consensus 394 RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi 473 (943)
+|++||+ |+++|++|+.. .+. + .|.-+. . ..++
T Consensus 203 -----l~~~~~~-------~li~Dea~~~g-~~~-~----------------------------~g~~~~-~----~~~~ 235 (401)
T 2bwn_A 203 -----IAEEFGA-------LTYIDEVHAVG-MYG-P----------------------------RGAGVA-E----RDGL 235 (401)
T ss_dssp -----HHHHHTC-------EEEEECTTTTT-TSS-T----------------------------TSCCHH-H----HHTC
T ss_pred -----HHHHcCC-------EEEEecccccc-ccC-C----------------------------CCceee-e----ccCc
Confidence 9999999 99999999843 120 0 000011 0 0122
Q ss_pred -CCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCC-CcchHHHHHHHHHHHHHHHHHHHHH
Q psy11047 474 -GRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSK-RFRALKLWFVIRNFGIKGLQKHIRE 551 (943)
Q Consensus 474 -e~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SR-rfrALklW~tLr~~G~~Gl~~~I~~ 551 (943)
+..|-+..+++|.++......+.. ..-..++..... .+....+- ......+..+++.+...|+.+..++
T Consensus 236 ~~~~~i~~~s~sK~~~~~GG~~~~~--~~~~~~l~~~~~-------~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~ 306 (401)
T 2bwn_A 236 MHRIDIFNGTLAKAYGVFGGYIAAS--ARMVDAVRSYAP-------GFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDA 306 (401)
T ss_dssp GGGCSEEEEESSSTTCSCCEEEEEC--HHHHHHHHHHCH-------HHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred cccCcEEEeechhhccCCCCEEecC--HHHHHHHHHhCc-------CceecCCCCHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 235778889999988432211100 000001110000 00011111 1112222333443322233333333
Q ss_pred HHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEE
Q psy11047 552 IFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMV 631 (943)
Q Consensus 552 ~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV 631 (943)
..++++++.+.|++. ++++.. +..+++
T Consensus 307 ---------------------------------------------------~~~~~~~l~~~L~~~-g~~~~~-~~~~~~ 333 (401)
T 2bwn_A 307 ---------------------------------------------------QQMHAKVLKMRLKAL-GMPIID-HGSHIV 333 (401)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHH-TCCBCC-CSSSCE
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHC-CCcccC-CCCCeE
Confidence 234556666666665 677664 456788
Q ss_pred EEEecCCChHHHHHHHHHh-ccCcEEEeeccc----CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 632 VIRLLGENILTEKLLKRLN-SKGRLHCVPASL----RIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 632 ~Fr~~g~n~l~~~Ll~~L~-~~G~~~~s~t~~----~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
.|++.+ ......+.++|. ++|. ++.+... .+..++|++++..++++||+++++.|+++.++
T Consensus 334 ~~~~~~-~~~~~~~~~~L~~~~gi-~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 334 PVVIGD-PVHTKAVSDMLLSDYGV-YVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp EEECCC-HHHHHHHHHHHHHHHCE-ECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred EEEeCC-hHHHHHHHHHHHhcCCE-EEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 998853 223567888885 6675 4544322 13458999888889999999999999887543
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.6e-12 Score=137.14 Aligned_cols=156 Identities=9% Similarity=-0.070 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
++.+ .+.+...+......|.......+++..+.+++.+.+|++.. ....+||+|||+|+..++.+..
T Consensus 46 ~~~v-~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~--------~~~v~~t~g~~~al~~~~~~l~---- 112 (391)
T 3h14_A 46 PRGA-VEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLD--------PGRVVITPGSSGGFLLAFTALF---- 112 (391)
T ss_dssp CHHH-HHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCC--------GGGEEEESSHHHHHHHHHHHHC----
T ss_pred CHHH-HHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCC--------HHHEEEecChHHHHHHHHHHhc----
Confidence 3444 34455455433333444344678899999999999886532 1368999999999988766531
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEe
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSG 361 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaT 361 (943)
.+| -.|++..-+|.+...++..-+.+++.++.+.+ +.+|+++|+++ .+.+|+.+
T Consensus 113 ------~~g---------d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---------~~~~v~i~ 168 (391)
T 3h14_A 113 ------DSG---------DRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---------DLAGLMVA 168 (391)
T ss_dssp ------CTT---------CEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---------CCSEEEEE
T ss_pred ------CCC---------CEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---------CCeEEEEC
Confidence 122 24667788999988888544458888998754 47899998776 15567777
Q ss_pred cCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 362 LALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 362 aGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
...+.+|.+-| +++|++ +|++||+ ++++|.+|+++
T Consensus 169 ~p~nptG~~~~~~~l~~l~~--------------------~~~~~~~-------~li~De~~~~~ 206 (391)
T 3h14_A 169 SPANPTGTMLDHAAMGALIE--------------------AAQAQGA-------SFISDEIYHGI 206 (391)
T ss_dssp SSCTTTCCCCCHHHHHHHHH--------------------HHHHTTC-------EEEEECTTTTC
T ss_pred CCCCCCCccCCHHHHHHHHH--------------------HHHHcCC-------EEEEECcchhc
Confidence 88889999877 777777 9999999 99999999876
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-12 Score=145.54 Aligned_cols=142 Identities=10% Similarity=-0.079 Sum_probs=93.8
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.|...+...+++ +++++++|.+ ..+||+|||+||..|+.+++.+... +|- .+
T Consensus 71 ~y~~~~~~~~l~----~~la~~~~~~------------~v~~t~ggt~A~~~al~~~~~~~~~------~Gd------~~ 122 (467)
T 1ax4_A 71 AYAGSRNYYDLK----DKAKELFNYD------------YIIPAHQGRGAENILFPVLLKYKQK------EGK------AK 122 (467)
T ss_dssp CSSSCHHHHHHH----HHHHHHHCCC------------EEEEESSHHHHHHHHHHHHHHHHHH------TTC------CS
T ss_pred ccccCccHHHHH----HHHHHHcCCC------------cEEEcCCcHHHHHHHHHHHHHhhcc------CCC------cc
Confidence 455556555554 4667777763 4799999999999999988653211 220 11
Q ss_pred eEEEecCCCchHHHH-HHHHCCccEEEEecC----------CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcc-cc
Q psy11047 302 LVAYCSDQAHSSVEK-AGLIGLVNMRYIESD----------DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF-LV 369 (943)
Q Consensus 302 ~vV~~S~~aHySv~K-Aa~LG~~~v~~Vp~D----------~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~t-Ga 369 (943)
.+|+++ ..||.... +..+.+..++.++.+ .++.+|+++|+++|+... ...+.+|+.+..++.+ |.
T Consensus 123 ~~viv~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~ 199 (467)
T 1ax4_A 123 NPVFIS-NFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQ 199 (467)
T ss_dssp SCEEEE-SSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSB
T ss_pred ceEEEe-ccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCcc
Confidence 114445 77866544 444444455555432 257899999999998642 0125677776666666 65
Q ss_pred c---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhc
Q psy11047 370 V---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 421 (943)
Q Consensus 370 I---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~G 421 (943)
+ +++++|++ +|++||+ |+|+|++++
T Consensus 200 ~~~~~~l~~i~~--------------------la~~~gi-------~li~De~~~ 227 (467)
T 1ax4_A 200 PVSMSNLKEVYE--------------------IAKQHGI-------FVVMDSARF 227 (467)
T ss_dssp CCCHHHHHHHHH--------------------HHHHHTC-------CEEEECTTH
T ss_pred CCChhHHHHHHH--------------------HHHHcCC-------EEEEEchhh
Confidence 5 56888888 9999999 999998754
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=145.09 Aligned_cols=126 Identities=10% Similarity=-0.020 Sum_probs=95.3
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|. .+++++|.+ ..+++++||+||..++.+.. .+| -.|
T Consensus 63 ~~~~~~~l~~----~la~~~g~~------------~~i~~~sG~~a~~~~l~~~~----------~~g---------d~v 107 (398)
T 1gc0_A 63 SNPTLNLLEA----RMASLEGGE------------AGLALASGMGAITSTLWTLL----------RPG---------DEV 107 (398)
T ss_dssp CCHHHHHHHH----HHHHHHTCS------------EEEEESSHHHHHHHHHHHHC----------CTT---------CEE
T ss_pred CChHHHHHHH----HHHHHhCCC------------cEEEECCHHHHHHHHHHHHh----------cCC---------CEE
Confidence 4455555554 667888875 35788888999988877641 122 247
Q ss_pred EecCCCchHHHHHHH----HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAGL----IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa~----LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+...++. ..+..++.++.+ |+++|+++|+++ +.+|+.+..++.+|.+.|+++|++
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~-- 174 (398)
T 1gc0_A 108 LLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTPA------TRVIYFESPANPNMHMADIAGVAK-- 174 (398)
T ss_dssp EEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH--
T ss_pred EEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCcccccHHHHHH--
Confidence 788899999877652 223467777763 799999988753 678888888899999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+|+|++|+.+
T Consensus 175 ------------------l~~~~~~-------~li~D~~~~~~ 192 (398)
T 1gc0_A 175 ------------------IARKHGA-------TVVVDNTYCTP 192 (398)
T ss_dssp ------------------HHGGGTC-------EEEEECTTTHH
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999754
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-12 Score=137.68 Aligned_cols=149 Identities=10% Similarity=-0.052 Sum_probs=110.2
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+.+.+...+......|...+...+++..+.+|+.+..|++.. ....++|+|||+|+..++.+..
T Consensus 47 v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~--------~~~v~~~~g~~~a~~~~~~~~~-------- 110 (370)
T 2z61_A 47 IVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADII--------PDNIIITGGSSLGLFFALSSII-------- 110 (370)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCC--------GGGEEEESSHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCC--------hhhEEECCChHHHHHHHHHHhc--------
Confidence 344454444433333444445678999999999988886532 1368999999999988877531
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcc
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~t 367 (943)
.+| -.|++++-+|.++..++..-+..++.++ +|+++|+++++++ +.+|+.+..++.+
T Consensus 111 --~~g---------d~vl~~~p~~~~~~~~~~~~g~~~~~v~------~d~~~l~~~l~~~------~~~v~~~~p~npt 167 (370)
T 2z61_A 111 --DDG---------DEVLIQNPCYPCYKNFIRFLGAKPVFCD------FTVESLEEALSDK------TKAIIINSPSNPL 167 (370)
T ss_dssp --CTT---------CEEEEESSCCTHHHHHHHHTTCEEEEEC------SSHHHHHHHCCSS------EEEEEEESSCTTT
T ss_pred --CCC---------CEEEEeCCCchhHHHHHHHcCCEEEEeC------CCHHHHHHhcccC------ceEEEEcCCCCCc
Confidence 122 2467788899999888854344677776 7899999888642 5567777788889
Q ss_pred cccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 368 GaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|.+-|++ |.+ +|++||+ ++++|.+|+.+
T Consensus 168 G~~~~~~-l~~--------------------~~~~~~~-------~li~De~~~~~ 195 (370)
T 2z61_A 168 GEVIDRE-IYE--------------------FAYENIP-------YIISDEIYNGL 195 (370)
T ss_dssp CCCCCHH-HHH--------------------HHHHHCS-------EEEEECTTTTC
T ss_pred CcccCHH-HHH--------------------HHHHcCC-------EEEEEcchhhc
Confidence 9999999 999 9999999 99999999876
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-11 Score=133.58 Aligned_cols=330 Identities=11% Similarity=-0.008 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHhcc---CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINCL---GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTE 281 (943)
Q Consensus 205 ~silgd~L~~alN~n---~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~ 281 (943)
+..+.+.+...+... ...|...+...+++.. +++++|.+.+ ..++|+|||+++..++.+..
T Consensus 49 ~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~----la~~~g~~~~----------~v~~~~g~~~al~~~~~~~~-- 112 (397)
T 2zyj_A 49 KEEAAEAAARILREKGEVALQYSPTEGYAPLRAF----VAEWIGVRPE----------EVLITTGSQQALDLVGKVFL-- 112 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHH----HHHHHTSCGG----------GEEEESHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHH----HHHHhCCChh----------hEEEeccHHHHHHHHHHHhC--
Confidence 344445554444321 1233333344555554 4555576543 68999999999987776531
Q ss_pred HHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEE-EE
Q psy11047 282 AIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI-FS 360 (943)
Q Consensus 282 ~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~V-Va 360 (943)
.+| -.|++..-+|.+...++...+.+++.+|.++++ +|+++|+++|+.. .+.+| +.
T Consensus 113 --------~~g---------d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~~-----~~~~v~~~ 169 (397)
T 2zyj_A 113 --------DEG---------SPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEG-PDLDALEEVLKRE-----RPRFLYLI 169 (397)
T ss_dssp --------CTT---------CEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHC-----CCSCEEEC
T ss_pred --------CCC---------CEEEEeCCCcHHHHHHHHHcCCEEEecCcCCCC-CCHHHHHHHHhhc-----CCeEEEEC
Confidence 122 236667788998888875444578888887666 9999999999862 13344 44
Q ss_pred ecCCCcccccccH---HHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcccccccccccee
Q psy11047 361 GLALPAFLVVDSY---CCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMV 437 (943)
Q Consensus 361 TaGTT~tGaIDpL---~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~V 437 (943)
+...+.+|.+-|. ++|.+ +|++||+ |+++|.+|+++ .+.
T Consensus 170 ~~~~nptG~~~~~~~l~~l~~--------------------~~~~~~~-------~li~De~~~~~-~~~---------- 211 (397)
T 2zyj_A 170 PSFQNPTGGLTPLPARKRLLQ--------------------MVMERGL-------VVVEDDAYREL-YFG---------- 211 (397)
T ss_dssp CBSCTTTCCBCCHHHHHHHHH--------------------HHHHHTC-------CEEEECTTTTC-BCS----------
T ss_pred CCCcCCCCCcCCHHHHHHHHH--------------------HHHHcCC-------EEEEeCCcccc-cCC----------
Confidence 5667778888664 47777 9999999 99999999876 320
Q ss_pred eeeecchhhhHHHHHHHhhccCcccccchhhh-hcCCCCeeEEEEcCCCccC--ccCcchhhhhcccCccccccCCCCcc
Q psy11047 438 VIRLLGENILTEKLLKRLNSKGRLHCVPASLR-IQGLGRAQNFTIVPSSLLR--VKNSGALHRTFNVEPLYLRHENSGLA 514 (943)
Q Consensus 438 cFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~-l~Gie~ADSItiDpHK~L~--vr~~~~L~~af~~~p~YL~~~~~g~~ 514 (943)
|... ...... ......-.-+..++||+++ +|-...+ ..+..+..-.. .
T Consensus 212 ---------------------g~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~-----~~~~~~~~l~~--~ 262 (397)
T 2zyj_A 212 ---------------------EARL-PSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAV-----AHPEALQKLVQ--A 262 (397)
T ss_dssp ---------------------SCCC-CCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEE-----CCHHHHHHHHH--H
T ss_pred ---------------------CCCC-CchhhhCcccCCCeEEEEecccccccccceeEEEe-----cCHHHHHHHHH--H
Confidence 0000 011111 0000011356788999998 1111111 00111100000 0
Q ss_pred cccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccc
Q psy11047 515 IDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFI 594 (943)
Q Consensus 515 ~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~ 594 (943)
.. .++... ..+..++....+-...+ +.+++..+ .
T Consensus 263 ~~--~~~~~~----~~~~~~a~~~~l~~~~~-~~~~~~~~-----------------------~---------------- 296 (397)
T 2zyj_A 263 KQ--GADLHT----PMLNQMLVHELLKEGFS-ERLERVRR-----------------------V---------------- 296 (397)
T ss_dssp HH--HHHSSC----CHHHHHHHHHHHTTTHH-HHHHHHHH-----------------------H----------------
T ss_pred HH--hhcCCC----CHHHHHHHHHHHHhCCH-HHHHHHHH-----------------------H----------------
Confidence 00 001101 12222222222211112 22333110 0
Q ss_pred cccCCcHHHHHHHHHHHHHHhC-CC-CeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeec-cc----CCCcE
Q psy11047 595 LSYFPKFQSVRLAQKFEALVLG-DP-RFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA-SL----RIQGL 667 (943)
Q Consensus 595 ~~~~p~~~~~~LA~~l~~~L~~-~p-~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t-~~----~g~~~ 667 (943)
..+.++++.+.|++ .| ++++..+...+.+.+++... ....++.++|.++|. ++.+. .. .+..+
T Consensus 297 --------~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~gi-~v~~g~~f~~~~~~~~~ 366 (397)
T 2zyj_A 297 --------YREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKG-LSAEGLFRRALEENV-AFVPGGPFFANGGGENT 366 (397)
T ss_dssp --------HHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECSTT-CCHHHHHHHHHHTTE-EEEESGGGCTTSCCTTE
T ss_pred --------HHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCCC-CCHHHHHHHHHHCCC-EEechHHhcCCCCCCCe
Confidence 23455666777765 57 58887666667778887531 124678888888875 44432 22 24579
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 668 GRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 668 lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
+|++++.. ++++|+++++.|.++.+++++
T Consensus 367 iRis~~~~-~~~~i~~~~~~l~~~l~~~~~ 395 (397)
T 2zyj_A 367 LRLSYATL-DREGIAEGVRRLGRALKGLLA 395 (397)
T ss_dssp EEEECSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 99976654 899999999999988776653
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-11 Score=135.65 Aligned_cols=156 Identities=6% Similarity=-0.122 Sum_probs=110.8
Q ss_pred HHHHHHHHHHhccCccccCChhHHH-HHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 207 LLGDMLSDAINCLGFTWASSPACTE-LEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 207 ilgd~L~~alN~n~~~~~~SPaate-LE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
.+.+.+...++.....|... ..+ ++..+.+|+.+.+|++.. ....++|+|||+|+..++.+..
T Consensus 45 ~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~--------~~~v~~t~g~~~al~~~~~~l~------ 108 (390)
T 1d2f_A 45 CIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAID--------SQTVVYGPSVIYMVSELIRQWS------ 108 (390)
T ss_dssp HHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCC--------GGGEEEESCHHHHHHHHHHHSS------
T ss_pred HHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCC--------HHHEEEcCCHHHHHHHHHHHhc------
Confidence 34455555554322333322 556 888888999888885422 1268999999999987766431
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCC---CCcCHHHHHHHHHHhhccCCCcEEEEEec
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK---LSLRGDKLIEAIERDKKKHLIPFFIFSGL 362 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~---grmD~daLe~aI~~d~~kG~~P~~VVaTa 362 (943)
.+| -.|++..-+|.+...++...+.+++.+|.+.+ +.+|+++|+++|+.. .+.+|+.+.
T Consensus 109 ----~~g---------d~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~l~~ 170 (390)
T 1d2f_A 109 ----ETG---------EGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKP-----ECKIMLLCS 170 (390)
T ss_dssp ----CTT---------CEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTST-----TEEEEEEES
T ss_pred ----CCC---------CEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccC-----CCeEEEEeC
Confidence 122 24666778899988888544447888887643 369999999998642 256667677
Q ss_pred CCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 363 ALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 363 GTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
..+.+|.+-| +++|.+ +|++||+ ++++|.+|+++
T Consensus 171 p~nptG~~~~~~~l~~l~~--------------------~~~~~~~-------~li~De~~~~~ 207 (390)
T 1d2f_A 171 PQNPTGKVWTCDELEIMAD--------------------LCERHGV-------RVISDEIHMDM 207 (390)
T ss_dssp SCTTTCCCCCTTHHHHHHH--------------------HHHHTTC-------EEEEECTTTTC
T ss_pred CCCCCCcCcCHHHHHHHHH--------------------HHHHcCC-------EEEEEcccccc
Confidence 7888998866 788888 9999999 99999999876
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-12 Score=138.72 Aligned_cols=329 Identities=8% Similarity=-0.022 Sum_probs=185.8
Q ss_pred CCceeEEccCCCChHHHHHHHHHHHH-hccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHH
Q psy11047 191 SPYMHAYFPALNSYPSLLGDMLSDAI-NCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASE 269 (943)
Q Consensus 191 sPrf~g~~~~~~s~~silgd~L~~al-N~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTe 269 (943)
+-.|+|.-+.+ ..+..+.+++.... ......|..+|...++| +++++++|.+ ..++++|||+
T Consensus 11 ~~~~l~~~~~p-~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~----~~la~~~~~~------------~~i~~~~G~~ 73 (357)
T 3lws_A 11 QTTGQISGHGK-RNVGVLKTAFAAVADEMASDQYGTGAIIEPFE----QKFADVLGMD------------DAVFFPSGTM 73 (357)
T ss_dssp TCSEESSBSSC-CBHHHHHHHHTTSCTTCBCEETTEETTHHHHH----HHHHHHHTCS------------EEEEESCHHH
T ss_pred hhcccccCCCC-CCHHHHHHHHHHhhcccCcccccCChHHHHHH----HHHHHHhCCC------------cEEEecCcHH
Confidence 44555544333 34555555554321 11122344456666665 4678888874 3578899999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHH---HHHCCccEEEEecCCCCCcCHHHHHHHHH
Q psy11047 270 STLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKA---GLIGLVNMRYIESDDKLSLRGDKLIEAIE 346 (943)
Q Consensus 270 ANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KA---a~LG~~~v~~Vp~D~~grmD~daLe~aI~ 346 (943)
|+..++.+.... | .+.+|+++...|++..++ +.+.+..++.++. +++.+|+++|+++.
T Consensus 74 a~~~al~~~~~~----------g-------d~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~~- 134 (357)
T 3lws_A 74 AQQVALRIWSDE----------T-------DNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA-ADRLMTLDEIKALP- 134 (357)
T ss_dssp HHHHHHHHHHHH----------H-------TCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC-TTSCCCHHHHHTCC-
T ss_pred HHHHHHHHHhhc----------C-------CCcEEEecccceeeeeccchhhhccCcEEEEecC-CCCCcCHHHHhcCc-
Confidence 999887765421 1 122577888899987663 2455557777775 56889999998762
Q ss_pred HhhccCCCcEEEEEecCCCcc-ccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 347 RDKKKHLIPFFIFSGLALPAF-LVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 347 ~d~~kG~~P~~VVaTaGTT~t-GaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
+ +.+|+.+..++.+ |.+-| +++|.+ +|++||+ |+|+|+||..
T Consensus 135 -~------~~~v~~~~p~np~~G~~~~~~~l~~i~~--------------------~~~~~~~-------~li~D~a~~~ 180 (357)
T 3lws_A 135 -D------IACLLLELPQREIGGVAPAFSELETISR--------------------YCRERGI-------RLHLDGARLF 180 (357)
T ss_dssp -S------CSEEEEESSBGGGTSBCCCHHHHHHHHH--------------------HHHHTTC-------EEEEEETTHH
T ss_pred -C------cceEEEEcccccCCceeCCHHHHHHHHH--------------------HHHHcCC-------EEEEECchhh
Confidence 1 3445555554454 77655 778888 9999999 9999998752
Q ss_pred CCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccC
Q psy11047 423 DPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVE 502 (943)
Q Consensus 423 ~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~ 502 (943)
. .. .. .-....... ..+|.+++++||+++......+. .+
T Consensus 181 ~-~~--~~-------------------------------~~~~~~~~~---~~~d~~~~s~sK~~~~~~gg~~~----~~ 219 (357)
T 3lws_A 181 E-ML--PY-------------------------------YEKTAAEIA---GLFDSIYISFYKGLGGIAGAILA----GP 219 (357)
T ss_dssp H-HH--HH-------------------------------HTCCHHHHH---TTSSEEEEESSSTTCCSSCEEEE----EC
T ss_pred h-hh--hh-------------------------------cCCChHHHH---hcCCEEEEeccccCCCCceEEEE----cC
Confidence 1 00 00 000111111 34689999999998421111110 01
Q ss_pred ccccccCCCCcccccCccccC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccccc
Q psy11047 503 PLYLRHENSGLAIDYMHWQIP-LSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGF 581 (943)
Q Consensus 503 p~YL~~~~~g~~~d~~~~tie-~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~ 581 (943)
+.++..-. ... .... ..+.... +...+..++...++++ ++
T Consensus 220 ~~~~~~~~-----~~~-~~~~~~~~~~~~------~~~~~~~~l~~~~~~~-----------------------~~---- 260 (357)
T 3lws_A 220 AAFCQTAR-----IWK-RRYGGDLISLYP------YIVSADYYYELRKDRM-----------------------GQ---- 260 (357)
T ss_dssp HHHHHHHH-----HHH-HHTTCCCSCCHH------HHHHHHHHHHHHTTCH-----------------------HH----
T ss_pred HHHHHHHH-----HHH-HHhcCCcccchH------HHHHHHHHHHHHHHHH-----------------------HH----
Confidence 11110000 000 0000 0000111 1111222233221110 00
Q ss_pred ccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEe-cCCCccEEEEEecCCC-hHHHHHHHHHhccCcEEEee
Q psy11047 582 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIP-AARHLGMVVIRLLGEN-ILTEKLLKRLNSKGRLHCVP 659 (943)
Q Consensus 582 ~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl-~~~~l~iV~Fr~~g~n-~l~~~Ll~~L~~~G~~~~s~ 659 (943)
..+.++++.+.|++.|++++. .++..+++.+++.+.. .....+.+.|.++|.+ +.+
T Consensus 261 ---------------------~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~-v~~ 318 (357)
T 3lws_A 261 ---------------------YYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLG-FVG 318 (357)
T ss_dssp ---------------------HHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEE-SCS
T ss_pred ---------------------HHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeE-Eec
Confidence 245677888899999999984 6788999999987542 2246778888888853 433
Q ss_pred ccc--CCCcEEEEeecCC---CCHHHHHHHHHHHHHH
Q psy11047 660 ASL--RIQGLGRAQNFTR---TTNDDITRDWNEIRNT 691 (943)
Q Consensus 660 t~~--~g~~~lR~v~~~~---tt~edId~ll~~I~~~ 691 (943)
... .+..++|+.++.. .+.+++++.++.|.+.
T Consensus 319 g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~a 355 (357)
T 3lws_A 319 YLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQA 355 (357)
T ss_dssp CCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHh
Confidence 211 3455899955433 5777888877776653
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-11 Score=135.20 Aligned_cols=141 Identities=9% Similarity=-0.030 Sum_probs=102.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHh------CCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhh
Q psy11047 223 WASSPACTELEIITMNWLGKMI------GLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHA 296 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~Ll------G~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~ 296 (943)
|.......+++..+.+|+.+.+ |++.. ....++|+|||+|+..++.+.. .+|
T Consensus 71 y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~--------~~~v~~~~g~~~al~~~~~~l~----------~~g---- 128 (416)
T 1bw0_A 71 YFPTVGSPEAREAVATWWRNSFVHKEELKSTIV--------KDNVVLCSGGSHGILMAITAIC----------DAG---- 128 (416)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC--------GGGEEEESHHHHHHHHHHHHHC----------CTT----
T ss_pred cCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC--------cceEEEeCChHHHHHHHHHHhC----------CCC----
Confidence 3333345778888888877433 32211 1368999999999987776531 122
Q ss_pred hcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc--
Q psy11047 297 EINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS-- 372 (943)
Q Consensus 297 ~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp-- 372 (943)
-.|++++-+|.++..++...+.+++.++.+. .+.+|+++|+++++.. +.+++.+...+.+|.+-|
T Consensus 129 -----d~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~ 197 (416)
T 1bw0_A 129 -----DYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK------TKLLIVTNPSNPCGSNFSRK 197 (416)
T ss_dssp -----CEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHH
T ss_pred -----CEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccC------CeEEEEeCCCCCCCcccCHH
Confidence 2466777789888887754444778888754 3679999999988643 456666677888999988
Q ss_pred -HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 -YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 -L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++|.+ +|++||+ ++++|.+|+.+
T Consensus 198 ~l~~i~~--------------------~~~~~~~-------~li~De~~~~~ 222 (416)
T 1bw0_A 198 HVEDIVR--------------------LAEELRL-------PLFSDEIYAGM 222 (416)
T ss_dssp HHHHHHH--------------------HHHHHTC-------CEEEECTTTTC
T ss_pred HHHHHHH--------------------HHHHcCC-------EEEEEcccccc
Confidence 888888 9999999 99999999875
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-13 Score=154.06 Aligned_cols=141 Identities=14% Similarity=0.031 Sum_probs=95.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|..++...++|..+++++++++|.+.+.. ...++.++|+++|+.++.+. + .|| -
T Consensus 82 y~~~~~~~~le~~~~~~~a~~~g~~~~~~-------~~~V~~~sGs~an~~~~~al----l------~pG---------D 135 (483)
T 1rv3_A 82 YGGTEHIDELETLCQKRALQAYGLDPQCW-------GVNVQPYSGSPANFAVYTAL----V------EPH---------G 135 (483)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCTTTE-------EEECCCSSHHHHHHHHHHHH----T------CTT---------C
T ss_pred cCcchhHHHHHHHHHHHHHHHhCCCcccC-------ceEEEECCcHHHHHHHHHHh----c------CCC---------C
Confidence 44567788999999999999999974300 01245555558887766542 1 133 2
Q ss_pred EEEecCCCchHHHHHH---------HHCC-ccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc
Q psy11047 303 VAYCSDQAHSSVEKAG---------LIGL-VNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD 371 (943)
Q Consensus 303 vV~~S~~aHySv~KAa---------~LG~-~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID 371 (943)
.|++++.+|.+....+ ..|. ...+.++++ +++.+|+++|++++++. .|.+|++ ..++.+ .+.
T Consensus 136 ~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~-----~tklIi~-~~sn~~-~~~ 208 (483)
T 1rv3_A 136 RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLF-----HPKLIIA-GTSCYS-RNL 208 (483)
T ss_dssp EEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH-----CCSEEEE-CCSSCC-SCC
T ss_pred EEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhc-----CCcEEEE-eCCcCC-CcC
Confidence 4667777776654321 1221 234444446 67999999999999843 1566666 444444 888
Q ss_pred cHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 372 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 372 pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|+++|++ +|+++|+ |+++|+|++..
T Consensus 209 dl~~i~~--------------------ia~~~g~-------~livD~ah~~g 233 (483)
T 1rv3_A 209 DYGRLRK--------------------IADENGA-------YLMADMAHISG 233 (483)
T ss_dssp CHHHHHH--------------------HHHHTTC-------EEEEECTTTHH
T ss_pred CHHHHHH--------------------HHHHcCC-------EEEEEccchhc
Confidence 9999999 9999999 99999997643
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-11 Score=137.74 Aligned_cols=167 Identities=7% Similarity=-0.120 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHhc---cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINC---LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRT 280 (943)
Q Consensus 204 ~~silgd~L~~alN~---n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~ 280 (943)
++.++.......-+. ....|..++...++...+.+|+.+..|++... ...++|+|||+++..++.+..
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~--------~~i~~t~G~~~al~~~~~~l~- 178 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANA--------DDIFLTDGASPGVHLMMQLLI- 178 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCG--------GGEEEESSSHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCc--------ccEEEcCCHHHHHHHHHHHHc-
Confidence 344554443333332 23456666677889999999999998876331 368999999999987766421
Q ss_pred HHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEE
Q psy11047 281 EAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFI 358 (943)
Q Consensus 281 ~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~V 358 (943)
..+ .-.|++++-+|.++..++.+.+.+++.++++++ +.+|+++|+++|+....+|..+.+|
T Consensus 179 --------~~~---------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~i 241 (500)
T 3tcm_A 179 --------RNE---------KDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRAL 241 (500)
T ss_dssp --------CST---------TEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred --------CCC---------CCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEE
Confidence 012 235788889999998888654458888888754 5999999999999876666567788
Q ss_pred EEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 359 FSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 359 VaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+...+.+|.+-+ +.+|.+ +|++||+ ++++|.+|+..
T Consensus 242 vl~~p~NPtG~~~s~~~l~~i~~--------------------la~~~~~-------~li~Deay~~~ 282 (500)
T 3tcm_A 242 VVINPGNPTGQVLAEENQYDIVK--------------------FCKNEGL-------VLLADEVYQEN 282 (500)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEECTTTTC
T ss_pred EEECCCCCCcccCCHHHHHHHHH--------------------HHHHcCC-------EEEEecCcccc
Confidence 88888888999855 666666 8999999 99999999876
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-11 Score=138.56 Aligned_cols=125 Identities=10% Similarity=0.033 Sum_probs=94.8
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|. .+++++|.+. .+++++||+||..++.+.. .+| -.|
T Consensus 56 ~~~~~~~l~~----~la~~~g~~~------------~v~~~sGt~A~~~~l~~~~----------~~g---------d~v 100 (421)
T 2ctz_A 56 MNPTVDVLEK----RLAALEGGKA------------ALATASGHAAQFLALTTLA----------QAG---------DNI 100 (421)
T ss_dssp BCHHHHHHHH----HHHHHHTCSE------------EEEESSHHHHHHHHHHHHC----------CTT---------CEE
T ss_pred CChHHHHHHH----HHHHHhCCCc------------eEEecCHHHHHHHHHHHHh----------CCC---------CEE
Confidence 4455555554 5678888752 4677778999988877531 122 347
Q ss_pred EecCCCchHHHHHH----HHCCccEEEE-ecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 305 YCSDQAHSSVEKAG----LIGLVNMRYI-ESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 305 ~~S~~aHySv~KAa----~LG~~~v~~V-p~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
+++..+|.+...++ ...+..++.+ +.+ |+++|+++|+++ +.+|+.+..++.+|.+.|+++|++
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----d~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~~- 168 (421)
T 2ctz_A 101 VSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE-----RPEEFLALTDEK------TRAWWVESIGNPALNIPDLEALAQ- 168 (421)
T ss_dssp EECSCCCHHHHHHHHTHHHHTTCEEEECCTTC-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH-
T ss_pred EEeCCCchHHHHHHHHHHHHcCCEEEEECCCC-----CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHHH-
Confidence 88999999988775 2334477777 654 799999988753 678888888999999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhh-cC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV-LG 422 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~-GG 422 (943)
+|++||+ ++++|++| +.
T Consensus 169 -------------------~a~~~g~-------~livD~~~~~~ 186 (421)
T 2ctz_A 169 -------------------AAREKGV-------ALIVDNTFGMG 186 (421)
T ss_dssp -------------------HHHHHTC-------EEEEECGGGGG
T ss_pred -------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999 53
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-12 Score=147.24 Aligned_cols=332 Identities=12% Similarity=0.062 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHHHhccCc------cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGF------TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLA 277 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~------~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~a 277 (943)
.+.++..|...+.|..+. .+...+...++|..+++++++++|.+.... +.-++++|||+||+.++.+
T Consensus 67 ~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~-------~~~v~~~sGt~An~~al~a 139 (490)
T 2a7v_A 67 SRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQW-------GVNVQPYSGSPANLAVYTA 139 (490)
T ss_dssp CHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTE-------EEECCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccC-------ceEEeCCchHHHHHHHHHH
Confidence 455555554444454421 123345567999999999999999976310 0135677999999988775
Q ss_pred HHHHHHHhhcccCCCchhhhcCCceEEEecCCCch------HHHH--HHHH-CC-ccEEEEecC-CCCCcCHHHHHHHHH
Q psy11047 278 GRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS------SVEK--AGLI-GL-VNMRYIESD-DKLSLRGDKLIEAIE 346 (943)
Q Consensus 278 AR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy------Sv~K--Aa~L-G~-~~v~~Vp~D-~~grmD~daLe~aI~ 346 (943)
. + .|| -.|+++...|. ++.. ++.+ |. ..+..+++| ++|.+|+++|++.+.
T Consensus 140 l----~------~pG---------D~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~ 200 (490)
T 2a7v_A 140 L----L------QPH---------DRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTAR 200 (490)
T ss_dssp H----C------CSC---------EECCC-------------------------------CCBCTTTCSBCHHHHHHHHH
T ss_pred H----c------CCC---------CEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHh
Confidence 3 1 233 23555555553 3222 2222 32 123344555 579999999999997
Q ss_pred HhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcc
Q psy11047 347 RDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 426 (943)
Q Consensus 347 ~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~af 426 (943)
... |.+|++ +.+..|.+.|+++|++ +|++||+ ++|+|+|++.. .+
T Consensus 201 ~~~-----~klIi~--~~s~~~~~~dl~~i~~--------------------ia~~~g~-------~livD~Ah~~g-lv 245 (490)
T 2a7v_A 201 LFR-----PRLIIA--GTSAYARLIDYARMRE--------------------VCDEVKA-------HLLADMAHISG-LV 245 (490)
T ss_dssp HHC-----CSEEEE--CCSSCCSCCCHHHHHH--------------------HHHHTTC-------EEEEECGGGHH-HH
T ss_pred hcC-----CcEEEE--cCCCCCCcccHHHHHH--------------------HHHHcCC-------EEEEccccccc-cc
Confidence 542 445543 4455677788999999 9999999 99999997543 11
Q ss_pred ccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccC----
Q psy11047 427 EIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVE---- 502 (943)
Q Consensus 427 eLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~---- 502 (943)
. .| ..+. .+ +.+|.+++++||+|+-...+.+.. +..
T Consensus 246 --~----------------------------~g--~~~~---~~---~~aDiv~~S~hK~l~Gp~GG~i~~--~~~~~~~ 285 (490)
T 2a7v_A 246 --A----------------------------AK--VIPS---PF---KHADIVTTTTHKTLRGARSGLIFY--RKGVKAV 285 (490)
T ss_dssp --H----------------------------TT--SSCC---GG---GTCSEEEEESSGGGCSCSCEEEEE--ECSEEEE
T ss_pred --c----------------------------CC--cCCC---CC---CCCCEEEECCcccCccccchheee--ccchhcc
Confidence 0 00 0110 11 257999999999885222222210 000
Q ss_pred -c-----c-c-cccCCCCcccccC-ccccCCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccch
Q psy11047 503 -P-----L-Y-LRHENSGLAIDYM-HWQIPLSKRFRAL-KLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGT 572 (943)
Q Consensus 503 -p-----~-Y-L~~~~~g~~~d~~-~~tie~SRrfrAL-klW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~ 572 (943)
+ . | +.. .++.. ..+.+++-....+ .+-.+++..-...+.++.++
T Consensus 286 ~~~~~~~~~~~l~~-----~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~--------------------- 339 (490)
T 2a7v_A 286 DPKTGREIPYTFED-----RINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQ--------------------- 339 (490)
T ss_dssp ETTTEEEEECCCHH-----HHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHH---------------------
T ss_pred cccccchhhHHHHH-----HHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHH---------------------
Confidence 0 0 0 000 00000 0112222211111 11111111111122222222
Q ss_pred hhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEec-CCCccEEEEEecCCChHHHHHHHHHhc
Q psy11047 573 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPA-ARHLGMVVIRLLGENILTEKLLKRLNS 651 (943)
Q Consensus 573 ~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~-~~~l~iV~Fr~~g~n~l~~~Ll~~L~~ 651 (943)
..++++++++.|.+. ++++.. ....+++.+.+.+...-...+.+.|.+
T Consensus 340 ------------------------------~~~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~ 388 (490)
T 2a7v_A 340 ------------------------------VLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLEL 388 (490)
T ss_dssp ------------------------------HHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHh
Confidence 356788888888875 899875 345678888775432124567777877
Q ss_pred cCcEEEeecccC------CCcEEEE----eecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 652 KGRLHCVPASLR------IQGLGRA----QNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 652 ~G~~~~s~t~~~------g~~~lR~----v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
.|. .+....+. ...-+|+ +++...+++|++++.+.|.++...
T Consensus 389 ~GI-~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 389 VSI-TANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp TTE-ECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCe-EEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 775 45422111 2457999 446678999999999999888654
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.2e-12 Score=138.29 Aligned_cols=156 Identities=10% Similarity=-0.025 Sum_probs=112.9
Q ss_pred HHHHHHHHHhc---cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCC-cEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 208 LGDMLSDAINC---LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPG-GGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 208 lgd~L~~alN~---n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~-~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
+.+.+...++. ....|.......+++..+.+|+.+.+|.+.. .. ..+||+|||+|+..++.+..
T Consensus 55 v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~--------~~~~v~~~~g~~~a~~~~~~~~~---- 122 (429)
T 1yiz_A 55 ALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTIN--------PMTEVLVTVGAYEALYATIQGHV---- 122 (429)
T ss_dssp HHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCC--------TTTSEEEESHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCC--------CcCCEEEecChHHHHHHHHHHhc----
Confidence 34555555543 1223333334678888999999998886532 13 68999999999988877531
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC----------CCCcCHHHHHHHHHHhhccCC
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD----------KLSLRGDKLIEAIERDKKKHL 353 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~----------~grmD~daLe~aI~~d~~kG~ 353 (943)
.+| -.|+++.-+|.+...++...+.+++.+|.+. ++.+|+++|+++|+.+
T Consensus 123 ------~~g---------d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~----- 182 (429)
T 1yiz_A 123 ------DEG---------DEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK----- 182 (429)
T ss_dssp ------CTT---------CEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTT-----
T ss_pred ------CCC---------CEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccC-----
Confidence 122 2366677788888877754445788888865 4679999999988632
Q ss_pred CcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 354 IPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 354 ~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+|+.+...+.+|.+-| +++|.+ +|++||+ ++++|.+|+++
T Consensus 183 -~~~v~~~~p~nptG~~~~~~~l~~i~~--------------------~~~~~~~-------~li~De~~~~~ 227 (429)
T 1yiz_A 183 -TKMIIINTPHNPLGKVMDRAELEVVAN--------------------LCKKWNV-------LCVSDEVYEHM 227 (429)
T ss_dssp -EEEEEEESSCTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEECTTTTC
T ss_pred -ceEEEECCCCCCCCccCCHHHHHHHHH--------------------HHHHcCc-------EEEEecccccc
Confidence 566777777888998865 888888 9999999 99999999876
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.9e-12 Score=136.58 Aligned_cols=142 Identities=12% Similarity=-0.057 Sum_probs=107.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|...+...++...+.+|+++.+|++.. ....++|+|||+|+..++.+.. .+| +-
T Consensus 72 y~~~~g~~~lr~~la~~l~~~~g~~~~--------~~~i~~~~g~~~al~~~~~~l~----------~~g--------~d 125 (398)
T 3ele_A 72 YTSAQGDVETRAAIAEFLNNTHGTHFN--------ADNLYMTMGAAASLSICFRALT----------SDA--------YD 125 (398)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCCCC--------GGGEEEESSHHHHHHHHHHHHC----------CST--------TC
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCC--------hHHEEEccCHHHHHHHHHHHHc----------CCC--------CC
Confidence 433444578889999999999996532 1368999999999988876531 121 02
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~ 378 (943)
.|++..-+|.++..++...+.+++.+|.+. .+.+|+++|+++++.+ +.+|+.+...+.+|.+-| +.+|++
T Consensus 126 ~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~ 199 (398)
T 3ele_A 126 EFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAH------TRGVIINSPNNPSGTVYSEETIKKLSD 199 (398)
T ss_dssp EEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTT------EEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred EEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcC------CCEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence 466778889998888865445888999875 5689999999988643 567777788888999877 555666
Q ss_pred hccccccccccccccCchHHHHHH------cCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILS------YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~------~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++ ||+ ++++|.+|+.+
T Consensus 200 --------------------~~~~~~~~~~~~~-------~li~De~~~~~ 223 (398)
T 3ele_A 200 --------------------LLEKKSKEIGRPI-------FIIADEPYREI 223 (398)
T ss_dssp --------------------HHHHHHHHHTSCC-------EEEEECTTTTC
T ss_pred --------------------HHHhhhhccCCCe-------EEEEecccccc
Confidence 8988 999 99999999876
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-11 Score=129.50 Aligned_cols=287 Identities=10% Similarity=-0.047 Sum_probs=176.4
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+++++++|.+.+ ..++|+|||+|+..++.+.. .+| -.|+++.-+|.++
T Consensus 69 ~lr~~la~~~~~~~~----------~v~~~~g~~~a~~~~~~~l~----------~~g---------d~vl~~~~~~~~~ 119 (365)
T 3get_A 69 ELKSTLAQKYKVQNE----------NIIIGAGSDQVIEFAIHSKL----------NSK---------NAFLQAGVTFAMY 119 (365)
T ss_dssp HHHHHHHHHHTCCGG----------GEEEESSHHHHHHHHHHHHC----------CTT---------CEEEECSSCCTHH
T ss_pred HHHHHHHHHhCCCcc----------eEEECCCHHHHHHHHHHHHh----------CCC---------CEEEEeCCChHHH
Confidence 456677888888654 68999999999987766421 122 2467788899999
Q ss_pred HHHHHHCCccEEEEec-CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIES-DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 393 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~-D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~ 393 (943)
..++...+.+++.++. ++++ +|+++|+++++.+ +.+|+.+..++.+|.+-|++++.+
T Consensus 120 ~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~--------------- 177 (365)
T 3get_A 120 EIYAKQCGAKCYKTQSITHNL-DEFKKLYETHKDE------IKLIFLCLPNNPLGECLDASEATE--------------- 177 (365)
T ss_dssp HHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTTTT------EEEEEEESSCTTTCCCCCHHHHHH---------------
T ss_pred HHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhCCC------CCEEEEcCCCCCCCCCcCHHHHHH---------------
Confidence 8888543347888887 6788 9999999998743 667777888889999999888888
Q ss_pred CchHHHHH--HcCCCCCccchhhhHHhhhcCCCcc--ccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhh
Q psy11047 394 TNFPNFIL--SYFPKFQSVRLAQKFEALVLGDPRF--EIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR 469 (943)
Q Consensus 394 RrfR~iar--~~Gl~~~~l~lwLHVDAA~GG~~af--eLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~ 469 (943)
+++ ++|+ ++++|.+|+.+ .+ . ... ..+ ....
T Consensus 178 -----l~~~~~~~~-------~li~De~~~~~-~~~~~--~~~-----------------------------~~~-~~~~ 212 (365)
T 3get_A 178 -----FIKGVNEDC-------LVVIDAAYNEF-ASFKD--SKK-----------------------------HLE-PCEL 212 (365)
T ss_dssp -----HHHTSCTTS-------EEEEECTTHHH-HHHHC--GGG-----------------------------CCC-HHHH
T ss_pred -----HHHhCCCCc-------EEEEeCccHHH-hcccC--Ccc-----------------------------ccc-HhHH
Confidence 776 6799 99999998754 10 0 000 000 0011
Q ss_pred hcCCCCeeEEEEcCCCccCccC---cchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH-HHH
Q psy11047 470 IQGLGRAQNFTIVPSSLLRVKN---SGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI-KGL 545 (943)
Q Consensus 470 l~Gie~ADSItiDpHK~L~vr~---~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~-~Gl 545 (943)
+. ....+-+..++||+++... ...+ .++..+..-... ...|+ ...+..++....+.. +.+
T Consensus 213 ~~-~~~~~i~~~s~sK~~~~~G~r~G~~~-----~~~~~~~~~~~~----~~~~~------~~~~~~~~~~~~l~~~~~~ 276 (365)
T 3get_A 213 IK-EFDNVLYLGTFSKLYGLGGLRIGYGI-----ANANIISAFYKL----RAPFN------VSNLALKAAVAAMDDDEFT 276 (365)
T ss_dssp HH-HCTTEEEEEESSSTTSCTTTCCEEEE-----ECHHHHHHHHHH----SCTTC------SCHHHHHHHHHHHTCHHHH
T ss_pred hc-cCCCEEEEeecchHhcCcchheEEEE-----cCHHHHHHHHHh----cCCCC------cCHHHHHHHHHHhCCHHHH
Confidence 11 1134677889999987322 1111 011111000000 00011 122222222222211 112
Q ss_pred HHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC
Q psy11047 546 QKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA 625 (943)
Q Consensus 546 ~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~ 625 (943)
.+..++ ..++++++.+.|.+. ++++. +
T Consensus 277 ~~~~~~---------------------------------------------------~~~~~~~l~~~l~~~-g~~~~-~ 303 (365)
T 3get_A 277 EKTLEN---------------------------------------------------NFSQMELYKEFAKKH-NIKII-D 303 (365)
T ss_dssp HHHHHH---------------------------------------------------HHHHHHHHHHHHHHT-TCEEC-C
T ss_pred HHHHHH---------------------------------------------------HHHHHHHHHHHHHhC-CCEEC-C
Confidence 222222 234566777777776 77764 4
Q ss_pred CCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 626 RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 626 ~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
+..+.+.+++.+. ....+.+.|.++|. ++.+...-+..++|++++ +++|++++++.|+++.
T Consensus 304 ~~~~~~~~~~~~~--~~~~~~~~l~~~gi-~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 304 SYTNFITYFFDEK--NSTDLSEKLLKKGI-IIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp CSSSEEEEECSSS--CHHHHHHHHHTTTE-ECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCC--CHHHHHHHHHHCCE-EEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 5667788888653 35788888888875 454432212679999765 7999999999998753
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-11 Score=132.77 Aligned_cols=285 Identities=9% Similarity=-0.036 Sum_probs=175.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+++++++|.+.+ ..++|+|||+|+..++.+. -.|+++.-+|.++
T Consensus 65 ~l~~~la~~~~~~~~----------~i~~~~g~t~al~~~~~~~-----------------------d~vi~~~~~~~~~ 111 (361)
T 3ftb_A 65 RLNKSIENYLKLKDI----------GIVLGNGASEIIELSISLF-----------------------EKILIIVPSYAEY 111 (361)
T ss_dssp HHHHHHHHHHTCCSC----------EEEEESSHHHHHHHHHTTC-----------------------SEEEEEESCCTHH
T ss_pred HHHHHHHHHhCCCcc----------eEEEcCCHHHHHHHHHHHc-----------------------CcEEEecCChHHH
Confidence 456677888887543 6899999999998776532 1366677889998
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~ 391 (943)
..++...+.+++.++.+.++.+++++|++++++ +.+|+.+...+.+|.+-| +.+|++
T Consensus 112 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~------------- 171 (361)
T 3ftb_A 112 EINAKKHGVSVVFSYLDENMCIDYEDIISKIDD-------VDSVIIGNPNNPNGGLINKEKFIHVLK------------- 171 (361)
T ss_dssp HHHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-------CSEEEEETTBTTTTBCCCHHHHHHHHH-------------
T ss_pred HHHHHHcCCeEEEeecCcccCCCHHHHHHhccC-------CCEEEEeCCCCCCCCCCCHHHHHHHHH-------------
Confidence 888865455889999998889999999988864 346667777888998876 555566
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhc
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQ 471 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~ 471 (943)
+|++||+ ++++|.+|+.+ .+. . .... .. ..
T Consensus 172 -------~~~~~~~-------~li~De~~~~~-~~~-~--------------------------------~~~~-~~-~~ 201 (361)
T 3ftb_A 172 -------LAEEKKK-------TIIIDEAFIEF-TGD-P--------------------------------SSSF-VG-EI 201 (361)
T ss_dssp -------HHHHHTC-------EEEEECSSGGG-TCC-T--------------------------------TSSS-GG-GT
T ss_pred -------HhhhcCC-------EEEEECcchhh-cCC-c--------------------------------ccch-hH-hc
Confidence 8889999 99999999866 321 0 0000 00 11
Q ss_pred CCCCeeEEEEcCCCccCccC---cchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH-HHHHH
Q psy11047 472 GLGRAQNFTIVPSSLLRVKN---SGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI-KGLQK 547 (943)
Q Consensus 472 Gie~ADSItiDpHK~L~vr~---~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~-~Gl~~ 547 (943)
+....+-+..++||.++... ...+ ..++..+..-.... ..| ....+..+.....+-. +.+.+
T Consensus 202 ~~~~~~i~~~s~sK~~~~~G~r~g~~~----~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~~~l~~~~~~~~ 267 (361)
T 3ftb_A 202 KNYSCLFIIRAMTKFFAMPGIRFGYGI----TNNKEIAAKIKAKQ----NPW------NINCFAEMAAINCLKDTNYIEE 267 (361)
T ss_dssp TTCSSEEEEEESSSTTSCGGGCCEEEE----ESCHHHHHHHHTTS----CTT------CSCHHHHHHHHHTSSCHHHHHH
T ss_pred ccCCCEEEEeeChhhcCCCCcceeEEE----eCCHHHHHHHHhhC----CCC------CCCHHHHHHHHHHhcCHHHHHH
Confidence 11223455678999987221 1111 00111110000000 001 1112222222222211 11222
Q ss_pred HHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCC
Q psy11047 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 627 (943)
Q Consensus 548 ~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~ 627 (943)
..++ ..++++++.+.|++.|+++...++.
T Consensus 268 ~~~~---------------------------------------------------~~~~~~~l~~~l~~~~~~~~~~~~~ 296 (361)
T 3ftb_A 268 SLLW---------------------------------------------------IKKERKRFIEELNKIGFIKRVFSPH 296 (361)
T ss_dssp HHHH---------------------------------------------------HHHHHHHHHHHHHHSSSEEEEECCS
T ss_pred HHHH---------------------------------------------------HHHHHHHHHHHHHhCCCCceecCCC
Confidence 1111 2456777888888889988333566
Q ss_pred ccEEEEEecCCChHHHHHHHHHhccCcEEEeecc-c--CCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS-L--RIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~-~--~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
.+.+.|++.+.+ ..++.++|.++|. ++.+.. . .+..++|++++ +.++++++++.|+++.+
T Consensus 297 ~~~~~~~~~~~~--~~~l~~~l~~~gi-~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 297 ANFVLCRLENIS--GEKLYDSLLKEDI-VIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp SSEEEEEESSSC--HHHHHHHHHTTTE-ECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCC--HHHHHHHHHHCCe-EEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 778888887532 5688888888875 554422 2 23679999765 78899999999988754
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-11 Score=136.09 Aligned_cols=337 Identities=15% Similarity=0.061 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHhccC---ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINCLG---FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTE 281 (943)
Q Consensus 205 ~silgd~L~~alN~n~---~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~ 281 (943)
+..+.+.+...+.... ..|...+...+++..+.+|+.+..|.+ .. ...++|+|||+|+..++.+..
T Consensus 93 ~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~--------~~v~~t~G~~~al~~~~~~l~-- 161 (448)
T 3aow_A 93 KEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-QD--------NDIMITSGSQQALDLIGRVFL-- 161 (448)
T ss_dssp HHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TT--------SEEEEESSHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-Ch--------hhEEEeCcHHHHHHHHHHHHc--
Confidence 3444455555443321 234444456788888888887777985 21 368999999999987776531
Q ss_pred HHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEE-EE
Q psy11047 282 AIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI-FS 360 (943)
Q Consensus 282 ~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~V-Va 360 (943)
.+| -.|++.+-+|.+...++...+.+++.||.+++| +|+++|+++|+.+..++..+.+| +.
T Consensus 162 --------~~G---------d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~ 223 (448)
T 3aow_A 162 --------NPG---------DIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTV 223 (448)
T ss_dssp --------CTT---------CEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred --------CCC---------CEEEEeCCChHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEEC
Confidence 122 246677788999888876444588889987766 99999999997321122235665 45
Q ss_pred ecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcccccccccccee
Q psy11047 361 GLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMV 437 (943)
Q Consensus 361 TaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~V 437 (943)
....+.+|.+-| +++|.+ +|++||+ ++++|.+|+.+ .+.
T Consensus 224 ~~~~NPtG~~~~~~~l~~i~~--------------------la~~~~~-------~lI~De~y~~~-~~~---------- 265 (448)
T 3aow_A 224 PTFQNPAGVTMNEDRRKYLLE--------------------LASEYDF-------IVVEDDPYGEL-RYS---------- 265 (448)
T ss_dssp CSSCTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEECSCTTC-BCS----------
T ss_pred CCCCCCcCCCCCHHHHHHHHH--------------------HHHHcCC-------EEEEECCCccc-cCC----------
Confidence 667788898866 567777 9999999 99999999876 330
Q ss_pred eeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC--ccCcchhhhhcccCccccccCCCCccc
Q psy11047 438 VIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR--VKNSGALHRTFNVEPLYLRHENSGLAI 515 (943)
Q Consensus 438 cFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~--vr~~~~L~~af~~~p~YL~~~~~g~~~ 515 (943)
|. ..+.... +. ....+-...+++|+++ +|-+..+ ..+..+..-.. ..
T Consensus 266 ---------------------g~-~~~~~~~-~~-~~~~vi~~~S~SK~~~~GlriG~v~-----~~~~l~~~l~~--~~ 314 (448)
T 3aow_A 266 ---------------------GN-PEKKIKA-LD-NEGRVIYLGTFSKILAPGFRIGWMV-----GDPGIIRKMEI--AK 314 (448)
T ss_dssp ---------------------SC-CCCCTGG-GC-TTSCEEEEEESTTTTCGGGCCEEEE-----ECHHHHHHHHH--HH
T ss_pred ---------------------CC-CCcCHHh-cC-CCCCEEEEccchhhccccccEEEEE-----eCHHHHHHHHH--HH
Confidence 00 0011111 11 1123556677889987 1111111 00111100000 00
Q ss_pred ccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCccccc
Q psy11047 516 DYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFIL 595 (943)
Q Consensus 516 d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~ 595 (943)
.. ++... ..+..++....+...++.++++++.+ .
T Consensus 315 ~~--~~~~~----~~~~q~a~~~~L~~~~~~~~~~~~~~-----------------------~----------------- 348 (448)
T 3aow_A 315 QS--TDLCT----NVFGQVVAWRYVDGGYLEKHIPEIRK-----------------------F----------------- 348 (448)
T ss_dssp HH--HHSSC----CHHHHHHHHHHHHTTHHHHHHHHHHH-----------------------H-----------------
T ss_pred HH--hcCCC----CHHHHHHHHHHHHhCCHHHHHHHHHH-----------------------H-----------------
Confidence 00 01101 12233333333322234444444211 0
Q ss_pred ccCCcHHHHHHHHHHHHHHhC-CC-CeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeec-cc----CCCcEE
Q psy11047 596 SYFPKFQSVRLAQKFEALVLG-DP-RFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA-SL----RIQGLG 668 (943)
Q Consensus 596 ~~~p~~~~~~LA~~l~~~L~~-~p-~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t-~~----~g~~~l 668 (943)
..+.++++.+.|++ .| ++++..+...+.+.+++... ....++.++|.++|. .+.+. .. .+..++
T Consensus 349 -------~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~-~~~~~l~~~l~~~gV-~v~pg~~f~~~~~~~~~i 419 (448)
T 3aow_A 349 -------YKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDG-IDSKKMLERAIKKGV-AYVPGEAFYAHRDVKNTM 419 (448)
T ss_dssp -------HHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTT-CCHHHHHHHHHHTTE-ECEEGGGGSTTCCCCSEE
T ss_pred -------HHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCC-CCHHHHHHHHHHCCc-EEEcchhhcCCCCCCCEE
Confidence 12345666666665 57 58876655566677777531 124678888888875 44432 22 246799
Q ss_pred EEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 669 RAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 669 R~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
|++++. .++++|+++++.|.++.++.
T Consensus 420 Rls~~~-~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 420 RLNFTY-VDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp EEECSS-SCTHHHHHHHHHHHHHHHHH
T ss_pred EEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 997665 38899999999998876554
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-11 Score=132.28 Aligned_cols=132 Identities=8% Similarity=-0.055 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
.+++..+.+++.+.+|.+.. ....++|+|||+|+..++.+.. .+| -.|+++.-
T Consensus 61 ~~lr~~la~~~~~~~~~~~~--------~~~i~~t~g~~~a~~~~~~~~~----------~~g---------d~vl~~~~ 113 (377)
T 3fdb_A 61 SLLSQATAEFYADRYGYQAR--------PEWIFPIPDVVRGLYIAIDHFT----------PAQ---------SKVIVPTP 113 (377)
T ss_dssp CCHHHHHHHHHHHHHCCCCC--------GGGEEEESCHHHHHHHHHHHHS----------CTT---------CCEEEEES
T ss_pred HHHHHHHHHHHHHHhCCCCC--------HHHEEEeCChHHHHHHHHHHhc----------CCC---------CEEEEcCC
Confidence 67888888899888886532 1368999999999988776531 122 13566778
Q ss_pred CchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccc
Q psy11047 310 AHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLG 386 (943)
Q Consensus 310 aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~ 386 (943)
+|.++..++...+.+++.+|.+.+ +|+++|+++|+++ +.+++.+...+.+|.+-| +.+|.+
T Consensus 114 ~~~~~~~~~~~~g~~~~~~~~~~~--~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~l~~l~~-------- 177 (377)
T 3fdb_A 114 AYPPFFHLLSATQREGIFIDATGG--INLHDVEKGFQAG------ARSILLCNPYNPLGMVFAPEWLNELCD-------- 177 (377)
T ss_dssp CCTHHHHHHHHHTCCEEEEECTTS--CCHHHHHHHHHTT------CCEEEEESSBTTTTBCCCHHHHHHHHH--------
T ss_pred CcHhHHHHHHHcCCEEEEccCCCC--CCHHHHHHHhccC------CCEEEEeCCCCCCCCCCCHHHHHHHHH--------
Confidence 899988887543348889998766 9999999999864 456777777888998865 555666
Q ss_pred cccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 387 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 387 ~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.+|+++
T Consensus 178 ------------~~~~~~~-------~li~De~~~~~ 195 (377)
T 3fdb_A 178 ------------LAHRYDA-------RVLVDEIHAPL 195 (377)
T ss_dssp ------------HHHHTTC-------EEEEECTTGGG
T ss_pred ------------HHHHcCC-------EEEEEcccchh
Confidence 8999999 99999999875
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-11 Score=133.86 Aligned_cols=306 Identities=11% Similarity=0.049 Sum_probs=172.9
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...+...++|..+.+++++++|.+.. -+++++||+||..++.+.. .+| -.
T Consensus 64 ~~~~~~~~~~~~~~~~la~~~g~~~~-----------~i~~~sGt~a~~~~~~~~~----------~~g---------d~ 113 (417)
T 3n0l_A 64 GGCEFVDEIETLAIERCKKLFNCKFA-----------NVQPNSGSQANQGVYAALI----------NPG---------DK 113 (417)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCSEE-----------ECCCSSHHHHHHHHHHHHS----------CTT---------CE
T ss_pred ccchHHHHHHHHHHHHHHHHhCCCCc-----------ceEeccHHHHHHHHHHHhc----------CCC---------CE
Confidence 34467789999999999999998643 2455566999988876531 122 24
Q ss_pred EEecCCCchHHHHHH----HHCC-ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 304 AYCSDQAHSSVEKAG----LIGL-VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 304 V~~S~~aHySv~KAa----~LG~-~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
|+++..+|.+..... ..|. ..++.+++++++.+|+++|+++|+... +.+|+.+.++ .|.+.|+++|.+
T Consensus 114 vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~--~G~~~~l~~i~~ 186 (417)
T 3n0l_A 114 ILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEK-----PKLIVCGASA--YARVIDFAKFRE 186 (417)
T ss_dssp EEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHC-----CSEEEECCSS--CCSCCCHHHHHH
T ss_pred EEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcC-----CeEEEECCcc--cCccCCHHHHHH
Confidence 667788887765422 2332 246677788889999999999998531 4566655544 499999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhcc
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK 458 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~ 458 (943)
+|++||+ |+++|++++....+
T Consensus 187 --------------------l~~~~~~-------~li~Dea~~~g~~~-------------------------------- 207 (417)
T 3n0l_A 187 --------------------IADEIGA-------YLFADIAHIAGLVV-------------------------------- 207 (417)
T ss_dssp --------------------HHHHHTC-------EEEEECTTTHHHHH--------------------------------
T ss_pred --------------------HHHHcCC-------EEEEECccchhhhh--------------------------------
Confidence 9999999 99999996432011
Q ss_pred CcccccchhhhhcCCCCeeEEEEcCCCccC-ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCc-chHHHHHH
Q psy11047 459 GRLHCVPASLRIQGLGRAQNFTIVPSSLLR-VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF-RALKLWFV 536 (943)
Q Consensus 459 G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf-rALklW~t 536 (943)
..... ..+..+|.++.++||++. .+- +.+. ..++..+..-. .....+..++-.. ....++..
T Consensus 208 ----~~~~~---~~~~~~di~~~s~sK~l~g~~~-G~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~aa~~~a 271 (417)
T 3n0l_A 208 ----AGEHP---SPFPYAHVVSSTTHKTLRGPRG-GIIM---TNDEELAKKIN-----SAIFPGIQGGPLMHVIAAKAVG 271 (417)
T ss_dssp ----TTSSC---CCTTTCSEEEEESSTTTCSCSC-EEEE---ESCHHHHHHHH-----HHHTTTTCSSCCHHHHHHHHHH
T ss_pred ----cccCC---CccccceEEEeeCccccCCCCe-eEEE---ECCHHHHHHHh-----hhhCCcccCCcHHHHHHHHHHH
Confidence 00000 012257999999999875 221 1110 00000100000 0000001111111 11122223
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhC
Q psy11047 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 616 (943)
Q Consensus 537 Lr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~ 616 (943)
+......++.++.++ ..++++++.+.|.+
T Consensus 272 ~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~l~~~L~~ 300 (417)
T 3n0l_A 272 FKFNLSDEWKVYAKQ---------------------------------------------------VRTNAQVLANVLMD 300 (417)
T ss_dssp HHHHTSHHHHHHHHH---------------------------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHH---------------------------------------------------HHHHHHHHHHHHHh
Confidence 332222334333333 24456777777776
Q ss_pred CCCeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccC-------CCcEEEEee----cCCCCHHHHHHH
Q psy11047 617 DPRFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR-------IQGLGRAQN----FTRTTNDDITRD 684 (943)
Q Consensus 617 ~p~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~-------g~~~lR~v~----~~~tt~edId~l 684 (943)
.++++... ...+++.+.+.+...-...+.+.|.+.|. .+.+.... ....+|+.. ....++++|+++
T Consensus 301 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~ 378 (417)
T 3n0l_A 301 -RKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGI-TANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIV 378 (417)
T ss_dssp -TTCEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTE-ECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred -CCceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCe-EEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHH
Confidence 67887652 34566767665432124567777777775 44322111 234689843 334679999999
Q ss_pred HHHHHHHHHH
Q psy11047 685 WNEIRNTATE 694 (943)
Q Consensus 685 l~~I~~~~~~ 694 (943)
++.|.++..+
T Consensus 379 ~~~l~~~l~~ 388 (417)
T 3n0l_A 379 SNYIADILDD 388 (417)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999887654
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.4e-12 Score=134.25 Aligned_cols=299 Identities=7% Similarity=-0.050 Sum_probs=171.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
+...|...++ .+++++++|.+. .++++|||+|+..++.+.... | .+.
T Consensus 44 ~~~~~~~~~l----~~~la~~~~~~~------------~i~~~~g~~a~~~a~~~~~~~----------g-------~~~ 90 (359)
T 3pj0_A 44 YGNGAVIEDF----ETKIAKILGKQS------------AVFFPSGTMAQQIALRIWADR----------K-------ENR 90 (359)
T ss_dssp TTBSHHHHHH----HHHHHHHHTCSE------------EEEESCHHHHHHHHHHHHHHH----------H-------TCC
T ss_pred ccCCHHHHHH----HHHHHHHhCCCc------------EEEeCCHHHHHHHHHHHHHhc----------C-------CCc
Confidence 3344555544 457788888753 478899999999888775431 1 233
Q ss_pred EEEecCCCchHHHHHH---HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcc-cccccHHHh--
Q psy11047 303 VAYCSDQAHSSVEKAG---LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF-LVVDSYCCL-- 376 (943)
Q Consensus 303 vV~~S~~aHySv~KAa---~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~t-GaIDpL~eI-- 376 (943)
+|+++...|++..... .+.+..++.++. +++.+|+++|+++ .. .+.+|+.+...+.+ |.+.|.+++
T Consensus 91 vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~-~~------~~~~v~~~~p~n~~~G~~~~~~~l~~ 162 (359)
T 3pj0_A 91 RVAYHPLSHLEIHEQDGLKELQQITPLLLGT-ANQLLTIDDIKSL-RE------PVSSVLIELPQREIGGQLPAFEELEK 162 (359)
T ss_dssp EEEECTTCHHHHSSTTHHHHHHCCEEEECSC-TTSCCCHHHHHTC-SS------CCSEEEEESSBGGGTSBCCCHHHHHH
T ss_pred EEEEeccceeeehhcchHHHhcCceEEecCC-cCCCcCHHHHHhc-cC------CceEEEEEecccCCCcccCCHHHHHH
Confidence 5777888888875432 333457778887 5789999999887 21 24556555444444 677665555
Q ss_pred -hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHh
Q psy11047 377 -GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRL 455 (943)
Q Consensus 377 -a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l 455 (943)
.+ +|++||+ |+|+|+|+..+ .. ..
T Consensus 163 l~~--------------------~~~~~~~-------~li~D~a~~~~-~~--~~------------------------- 187 (359)
T 3pj0_A 163 ISE--------------------YCHEQGI-------SLHLDGARLWE-IT--PF------------------------- 187 (359)
T ss_dssp HHH--------------------HHHHHTC-------EEEEEETTCGG-GH--HH-------------------------
T ss_pred HHH--------------------HHHHcCC-------EEEEECcchhc-ch--hh-------------------------
Confidence 77 9999999 99999987543 11 00
Q ss_pred hccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHH
Q psy11047 456 NSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWF 535 (943)
Q Consensus 456 ~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~ 535 (943)
.-....... ..+|.+++++||+++..-...+. .++..+..-.. .... ++ ........+
T Consensus 188 ------~~~~~~~~~---~~~d~~~~s~sK~~~~~~gg~~~----~~~~l~~~~~~--~~~~--~~-~~~~~~~~~---- 245 (359)
T 3pj0_A 188 ------YQKSAEEIC---ALFDSVYVSFYKGIGGIAGAILA----GNDDFVQEAKI--WKRR--YG-GDLISLYPY---- 245 (359)
T ss_dssp ------HTCCHHHHH---TTCSEEEEESSSTTCCSSCEEEE----ECHHHHHHHHH--HHHH--TT-CCCSCCHHH----
T ss_pred ------hCCCHHHhh---ccCCEEEEeccccCCCcceEEEE----CCHHHHHHHHH--HHHH--hC-CCcchhHHH----
Confidence 000111111 35799999999987632111110 01111100000 0000 00 000000000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHh
Q psy11047 536 VIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 615 (943)
Q Consensus 536 tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~ 615 (943)
...+...+...++++ ++ ..+.++++.+.|+
T Consensus 246 --~~a~~~~l~~~~~~~-----------------------~~-------------------------~~~~~~~l~~~L~ 275 (359)
T 3pj0_A 246 --ILSADYYFEKRIGKM-----------------------AE-------------------------YFEAAKGLAERFN 275 (359)
T ss_dssp --HHHHHHHHHHHGGGH-----------------------HH-------------------------HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHh-----------------------HH-------------------------HHHHHHHHHHHHh
Confidence 111111222222110 00 2456778888999
Q ss_pred CCCCeEEe-cCCCccEEEEEecCCC-hHHHHHHHHHhccCcEEEeecc---cCCCcEEEEeecC---CCCHHHHHHHHHH
Q psy11047 616 GDPRFEIP-AARHLGMVVIRLLGEN-ILTEKLLKRLNSKGRLHCVPAS---LRIQGLGRAQNFT---RTTNDDITRDWNE 687 (943)
Q Consensus 616 ~~p~~eIl-~~~~l~iV~Fr~~g~n-~l~~~Ll~~L~~~G~~~~s~t~---~~g~~~lR~v~~~---~tt~edId~ll~~ 687 (943)
++|++++. .++..+.+.+++.... .....+.+.|.++|.+ +.+.. ..+..++|+.+.. ..+.+++++.++.
T Consensus 276 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~-v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~ 354 (359)
T 3pj0_A 276 SCSGVKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVG-ISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRC 354 (359)
T ss_dssp TSTTEEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEE-CCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHH
T ss_pred hCCCceeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcE-ecCCccccCCCceEEEEEecCccccCCHHHHHHHHHH
Confidence 99999995 5778899998886432 2256788888888854 43321 2456789995432 3567777777776
Q ss_pred HHH
Q psy11047 688 IRN 690 (943)
Q Consensus 688 I~~ 690 (943)
|.+
T Consensus 355 l~~ 357 (359)
T 3pj0_A 355 LEK 357 (359)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3e-11 Score=132.11 Aligned_cols=129 Identities=7% Similarity=-0.087 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
.....+.+++++++|.+.+ ..++|+|||+|+..++.+++.. . + ++-+++.+..-
T Consensus 87 ~~~~~l~~~la~~~~~~~~----------~v~~~~gg~~a~~~al~~~~~~--~------~--------~~~vi~~~~~y 140 (395)
T 1vef_A 87 PMRGEFYRTLTAILPPELN----------RVFPVNSGTEANEAALKFARAH--T------G--------RKKFVAAMRGF 140 (395)
T ss_dssp HHHHHHHHHHHHTSCTTEE----------EEEEESSHHHHHHHHHHHHHHH--H------S--------CCEEEEETTCC
T ss_pred HHHHHHHHHHHHhcCCCcC----------EEEEcCcHHHHHHHHHHHHHHH--h------C--------CCeEEEEcCCc
Confidence 3445677788888876543 6899999999999998876531 1 1 22345555555
Q ss_pred chHHHHHHHH-CCc-----------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HH
Q psy11047 311 HSSVEKAGLI-GLV-----------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YC 374 (943)
Q Consensus 311 HySv~KAa~L-G~~-----------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~ 374 (943)
|.+...++.+ |.. .+..++. .|+++|+++|+.+ +.+|+++...+.+|.+.| ++
T Consensus 141 ~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~~~~~l~ 209 (395)
T 1vef_A 141 SGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEE------TAAVILEPVQGEGGVRPATPEFLR 209 (395)
T ss_dssp CCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHH
T ss_pred CCCchhhhhhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhccC------EEEEEEeCccCCCCccCCCHHHHH
Confidence 6555555543 331 1344443 4899999988642 567777666667898766 99
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++ +|++||+ ++++|++|+++
T Consensus 210 ~i~~--------------------l~~~~~~-------~li~Dea~~~~ 231 (395)
T 1vef_A 210 AARE--------------------ITQEKGA-------LLILDEIQTGM 231 (395)
T ss_dssp HHHH--------------------HHHHHTC-------EEEEECTTTTT
T ss_pred HHHH--------------------HHHHcCC-------EEEEEecccCC
Confidence 9999 9999999 99999999864
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.9e-11 Score=132.85 Aligned_cols=133 Identities=11% Similarity=-0.013 Sum_probs=98.2
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.+|...++|..+ +|+++|.+ ...++|+|||+|+..++.+.. + .+| -.|
T Consensus 34 ~~~~~~~l~~~~---~a~~~g~~-----------~~~v~~~sgt~al~~al~~l~---~------~~G---------d~V 81 (377)
T 3ju7_A 34 YGPINQRFEQTI---MSGFFQNR-----------GAVTTVANATLGLMAAIQLKK---R------KKG---------KYA 81 (377)
T ss_dssp SCHHHHHHHHHH---HHHTSTTC-----------SEEEEESCHHHHHHHHHHHHS---C------TTC---------CEE
T ss_pred CCHHHHHHHHHH---HHHHhCCC-----------CeEEEeCCHHHHHHHHHHHcC---C------CCc---------CEE
Confidence 367777777653 17777722 247999999999988876531 0 122 247
Q ss_pred EecCCCchHHHHHHHHCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 305 YCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 305 ~~S~~aHySv~KAa~LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+++..+|.+...++..-+..++.++++ +++.+|+++|+++|..... .+.+|+ .++.+|.+.|+++|.+
T Consensus 82 i~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~---~tk~v~---~~~~~G~~~~~~~i~~----- 150 (377)
T 3ju7_A 82 LMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKE---EVAIVV---PYATFGSWMNLEEYEE----- 150 (377)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGG---GEEEEC---CBCGGGBCCCCHHHHH-----
T ss_pred EECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCC---CceEEE---EECCCCCccCHHHHHH-----
Confidence 789999999988886444588889987 5789999999999843210 134444 3456799999999999
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+ ||+ ++|+|+|++..
T Consensus 151 ---------------la~-~~~-------~vi~D~a~a~g 167 (377)
T 3ju7_A 151 ---------------LEK-KGV-------PVVVDAAPGFG 167 (377)
T ss_dssp ---------------HHH-TTC-------CBEEECTTCTT
T ss_pred ---------------HHh-cCC-------EEEEECCCccC
Confidence 999 999 99999998644
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-11 Score=133.08 Aligned_cols=304 Identities=8% Similarity=-0.061 Sum_probs=178.1
Q ss_pred CccccCChhHHHHHHHHHHHHHHHh-CCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhc
Q psy11047 220 GFTWASSPACTELEIITMNWLGKMI-GLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEI 298 (943)
Q Consensus 220 ~~~~~~SPaateLE~~Vi~wLa~Ll-G~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i 298 (943)
...|...+...+++..+ ++++ +.+.+ ..++|+|||+|+..++.+.. .+|
T Consensus 56 ~~~y~~~~g~~~l~~~l----a~~~~~~~~~----------~v~~~~g~~~a~~~~~~~l~----------~~g------ 105 (375)
T 3op7_A 56 KLNYGWIEGSPAFKKSV----SQLYTGVKPE----------QILQTNGATGANLLVLYSLI----------EPG------ 105 (375)
T ss_dssp CCSSCCTTCCHHHHHHH----HTTSSSCCGG----------GEEEESHHHHHHHHHHHHHC----------CTT------
T ss_pred CcCCCCCCChHHHHHHH----HHHhccCChh----------hEEEcCChHHHHHHHHHHhc----------CCC------
Confidence 33444444455666554 4544 34433 68999999999988876531 122
Q ss_pred CCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---H
Q psy11047 299 NSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---Y 373 (943)
Q Consensus 299 ~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L 373 (943)
-.|++...+|.+...++..-+.+++.++.+ +.+.+|+++|+++++.+ +.+|+.+...+.+|.+-| +
T Consensus 106 ---d~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~l 176 (375)
T 3op7_A 106 ---DHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPT------TKMICINNANNPTGAVMDRTYL 176 (375)
T ss_dssp ---CEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT------CCEEEEESSCTTTCCCCCHHHH
T ss_pred ---CEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccC------CeEEEEcCCCCCCCCCCCHHHH
Confidence 246778889998888775434477788775 35568999999998743 556777778889999988 8
Q ss_pred HHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHH
Q psy11047 374 CCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLK 453 (943)
Q Consensus 374 ~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~ 453 (943)
++|.+ +|++||+ |+++|.+|+++ .+. +
T Consensus 177 ~~i~~--------------------la~~~~~-------~li~De~~~~~-~~~-~------------------------ 203 (375)
T 3op7_A 177 EELVE--------------------IASEVGA-------YILSDEVYRSF-SEL-D------------------------ 203 (375)
T ss_dssp HHHHH--------------------HHHTTTC-------EEEEECCSCCC-SSS-C------------------------
T ss_pred HHHHH--------------------HHHHcCC-------EEEEEcccccc-ccc-C------------------------
Confidence 88888 9999999 99999999876 321 0
Q ss_pred HhhccCcccccchhhhhcCCCCeeEEEEcCCCccCcc---CcchhhhhcccCccccccCCCCcccccCc-cccCCCCCcc
Q psy11047 454 RLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVK---NSGALHRTFNVEPLYLRHENSGLAIDYMH-WQIPLSKRFR 529 (943)
Q Consensus 454 ~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr---~~~~L~~af~~~p~YL~~~~~g~~~d~~~-~tie~SRrfr 529 (943)
.+..... ...+-+..+++|.++.. -...+ .++..+..-. .... ++... .
T Consensus 204 ---------~~~~~~~----~~~~i~~~s~sK~~~~~G~r~G~v~-----~~~~l~~~~~-----~~~~~~~~~~----~ 256 (375)
T 3op7_A 204 ---------VPSIIEV----YDKGIAVNSLSKTYSLPGIRIGWVA-----ANHQVTDILR-----DYRDYTMICA----G 256 (375)
T ss_dssp ---------CCCHHHH----CTTEEEEEESSSSSSCGGGCCEEEE-----CCHHHHHHHT-----TTGGGTTSCC----C
T ss_pred ---------CCchhhh----cCCEEEEeEChhhcCCcccceEEEE-----eCHHHHHHHH-----HHHhhhccCC----C
Confidence 0111111 12346677889998722 11111 0111110000 0000 11111 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHH
Q psy11047 530 ALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQK 609 (943)
Q Consensus 530 ALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~ 609 (943)
.+..++....+. .+.+.+++..+ . ..+.++.
T Consensus 257 ~~~~~~~~~~l~--~~~~~~~~~~~-----------------------~------------------------~~~~~~~ 287 (375)
T 3op7_A 257 VFDDLVAQLALA--HYQEILERNRH-----------------------I------------------------LEENLAI 287 (375)
T ss_dssp HHHHHHHHHHHH--THHHHHHHHHH-----------------------H------------------------HHHHHHH
T ss_pred cHHHHHHHHHHh--ccHHHHHHHHH-----------------------H------------------------HHHHHHH
Confidence 222333333222 12233333110 0 2345677
Q ss_pred HHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHH-hccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHH
Q psy11047 610 FEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRL-NSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEI 688 (943)
Q Consensus 610 l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L-~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I 688 (943)
+.+.|++.|++++..+.....+.+.+... .....+.+++ .++|.+...........++|++++. +.++|+++++.|
T Consensus 288 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~~~~--~~~~i~~~l~~l 364 (375)
T 3op7_A 288 LDQWIEEEPLVSYIRPAVVSTSFVKIAVD-MPMEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFAC--EQETLIKGLEKL 364 (375)
T ss_dssp HHHHHHHCTTEEECCCSSSSCEEEEECCS-SCHHHHHHHHHHHHCEECEEGGGGTCTTEEEECCCS--CHHHHHHHHHHH
T ss_pred HHHHHhhCCCceEecCCCeEEEeEEcCCC-CCHHHHHHHHHHhCCEEEeChhhhCCCCeEEEEecC--CHHHHHHHHHHH
Confidence 78888888899887655544455555421 1246777776 5667543322233346799996543 348899999888
Q ss_pred HHHHHH
Q psy11047 689 RNTATE 694 (943)
Q Consensus 689 ~~~~~~ 694 (943)
.++.++
T Consensus 365 ~~~l~~ 370 (375)
T 3op7_A 365 SQFLRR 370 (375)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 877554
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=138.42 Aligned_cols=171 Identities=9% Similarity=0.023 Sum_probs=100.3
Q ss_pred ceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHH
Q psy11047 193 YMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTL 272 (943)
Q Consensus 193 rf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL 272 (943)
.|+.|..+.+. +.+. +.+...+......|..++...+++ +++++++|.+ .++||+|||+||.
T Consensus 42 ~ylD~~~~~~~-~~v~-~a~~~~l~~~~~~y~~~~~~~~l~----~~la~~~~~~------------~v~~t~~gt~A~~ 103 (467)
T 2oqx_A 42 VFIDLLTDSGT-GAVT-QSMQAAMMRGDEAYSGSRSYYALA----ESVKNIFGYQ------------YTIPTHQGRGAEQ 103 (467)
T ss_dssp CSEECSCCSSC-SCCC-HHHHHHTTSCCCCSSSCHHHHHHH----HHHHHHHCCS------------EEEEEC--CCSHH
T ss_pred eeEecccCCCc-HHHH-HHHHHHhccCcceeccCchhHHHH----HHHHHHhCcC------------cEEEcCCcHHHHH
Confidence 45665444333 3333 223333433223455566666555 4667778763 4799999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCchhhhcCC-ceEEEecCCCchHHHHHH-HHCCccEEEE------ecC----CCCCcCHHH
Q psy11047 273 ICLLAGRTEAIRKYQQSHPELEHAEINS-RLVAYCSDQAHSSVEKAG-LIGLVNMRYI------ESD----DKLSLRGDK 340 (943)
Q Consensus 273 ~AL~aAR~~~l~~~~~~~pGl~~~~i~~-~~vV~~S~~aHySv~KAa-~LG~~~v~~V------p~D----~~grmD~da 340 (943)
.|+.+++...... .|. .. +- |+++ ..|+....+. ..+...+... +.+ .++.+|+++
T Consensus 104 ~al~~~~~~~~~~-----~G~-----~~~d~-Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 171 (467)
T 2oqx_A 104 IYIPVLIKKREQE-----KGL-----DRSKM-VAFS-NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEG 171 (467)
T ss_dssp HHHHHHHHHHHHH-----HCC-----CTTTC-EEEE-SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHH
T ss_pred HHHHHHhcccccc-----CCC-----Cccce-EEec-ccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHH
Confidence 9999887431110 010 01 22 4445 5897655544 3333333222 223 467899999
Q ss_pred HHHHHHHhhccCCCcEEEEEecCCCcc-ccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhH
Q psy11047 341 LIEAIERDKKKHLIPFFIFSGLALPAF-LVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKF 416 (943)
Q Consensus 341 Le~aI~~d~~kG~~P~~VVaTaGTT~t-GaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHV 416 (943)
|+++|+... ...+.+|+.+..++.+ |.+ +++++|++ +|++||+ |+|+
T Consensus 172 Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~--------------------la~~~gi-------~li~ 222 (467)
T 2oqx_A 172 LERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYS--------------------IAKKYDI-------PVVM 222 (467)
T ss_dssp HHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHH--------------------HHHHTTC-------CEEE
T ss_pred HHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHH--------------------HHHHcCC-------EEEE
Confidence 999998631 0125566665555555 554 56889998 9999999 9999
Q ss_pred HhhhcC
Q psy11047 417 EALVLG 422 (943)
Q Consensus 417 DAA~GG 422 (943)
|+|++.
T Consensus 223 D~a~~~ 228 (467)
T 2oqx_A 223 DSARFA 228 (467)
T ss_dssp ECTTHH
T ss_pred Echhhh
Confidence 976543
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=6e-11 Score=128.87 Aligned_cols=138 Identities=11% Similarity=-0.039 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
+...+++..+.+|+.+.+|.+... ....++|+|||+|+..++.+.. .+| -.|++
T Consensus 63 ~~~~~l~~~ia~~~~~~~g~~~~~-------~~~v~~~~g~~~a~~~~~~~l~----------~~g---------d~vl~ 116 (376)
T 2dou_A 63 SCTLPFLEEAARWYEGRYGVGLDP-------RREALALIGSQEGLAHLLLALT----------EPE---------DLLLL 116 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCT-------TTSEEEESSHHHHHHHHHHHHC----------CTT---------CEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCC-------CccEEEcCCcHHHHHHHHHHhc----------CCC---------CEEEE
Confidence 356788888888888888986210 0258999999999987776531 122 24667
Q ss_pred cCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccc
Q psy11047 307 SDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVK 383 (943)
Q Consensus 307 S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~ 383 (943)
.+-+|.+...++...+.+++.+|.++.+.+|+++|+++|... +.+|+.+...+.+|.+-| +++|.+
T Consensus 117 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~----- 185 (376)
T 2dou_A 117 PEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWRE------AKVLLLNYPNNPTGAVADWGYFEEALG----- 185 (376)
T ss_dssp ESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHH------EEEEEECSSCTTTCCCCCHHHHHHHHH-----
T ss_pred CCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccC------ceEEEECCCCCCcCccCCHHHHHHHHH-----
Confidence 788899988887544457888888545579999999999643 567777777788898866 667777
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.+|+++
T Consensus 186 ---------------~~~~~~~-------~li~De~~~~~ 203 (376)
T 2dou_A 186 ---------------LARKHGL-------WLIHDNPYVDQ 203 (376)
T ss_dssp ---------------HHHHTTC-------EEEEECTTGGG
T ss_pred ---------------HHHHcCC-------EEEEEccchhc
Confidence 9999999 99999999875
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-10 Score=126.44 Aligned_cols=126 Identities=11% Similarity=0.091 Sum_probs=92.4
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...+++ +.+++++|.++ .+++++||+|+..++.+.. .+| -.|
T Consensus 50 ~~~~~~~l~----~~la~~~~~~~------------~i~~~sGt~a~~~~~~~~~----------~~g---------~~v 94 (386)
T 1cs1_A 50 GNPTRDVVQ----RALAELEGGAG------------AVLTNTGMSAIHLVTTVFL----------KPG---------DLL 94 (386)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE------------EEEESSHHHHHHHHHHHHC----------CTT---------CEE
T ss_pred CCccHHHHH----HHHHHHhCCCc------------EEEeCCHHHHHHHHHHHHh----------CCC---------CEE
Confidence 344445554 56677777652 3555666999988877541 122 246
Q ss_pred EecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++..+|.++..+. ...+..++.++.+ |+++|+++|+++ +.+|+.+...+.+|.+.|+++|.+
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~-- 161 (386)
T 1cs1_A 95 VAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG-----DEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICH-- 161 (386)
T ss_dssp EEETTCCHHHHHHHHHHHTTTSCEEEEECTT-----CHHHHHHHHHTC------CSEEEEECSCTTTCCCCCHHHHHH--
T ss_pred EEecCCcHhHHHHHHHHHHhcCCEEEEeCCC-----CHHHHHHhhccC------CcEEEEeCCCCCCCcccCHHHHHH--
Confidence 77888999866654 2223467777764 799999999753 567778888999999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.+|+++
T Consensus 162 ------------------l~~~~~~-------~li~De~~~~~ 179 (386)
T 1cs1_A 162 ------------------LAREVGA-------VSVVDNTFLSP 179 (386)
T ss_dssp ------------------HHHHTTC-------EEEEECTTTCT
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999876
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-10 Score=128.97 Aligned_cols=119 Identities=5% Similarity=-0.120 Sum_probs=92.1
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE 315 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~ 315 (943)
+.+++++++|.+ ..++++||++|+..++.+.. .+| -.|+++...|.+..
T Consensus 67 l~~~ia~~~g~~------------~~i~~~~g~~ai~~~~~~l~----------~~g---------d~Vl~~~~~y~~~~ 115 (404)
T 1e5e_A 67 LEGKIAFLEKTE------------ACVATSSGMGAIAATVLTIL----------KAG---------DHLISDECLYGCTH 115 (404)
T ss_dssp HHHHHHHHHTCS------------EEEEESSHHHHHHHHHHHHC----------CTT---------CEEEEESCCCHHHH
T ss_pred HHHHHHHHhCCC------------cEEEeCChHHHHHHHHHHHh----------CCC---------CEEEEeCCCchhHH
Confidence 445667777875 36888999999987776421 122 24777889999887
Q ss_pred H----HHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 316 K----AGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 316 K----Aa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
. ++...+.+++.++.+ |+++|+++|+++ +.+|+.+..++.+|.+.|+++|++
T Consensus 116 ~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------t~~v~l~~p~NptG~v~~l~~i~~------------- 171 (404)
T 1e5e_A 116 ALFEHALTKFGIQVDFINTA-----IPGEVKKHMKPN------TKIVYFETPANPTLKIIDMERVCK------------- 171 (404)
T ss_dssp HHHHTHHHHTTCEEEEECTT-----STTHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH-------------
T ss_pred HHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCC------CcEEEEECCCCCCCcccCHHHHHH-------------
Confidence 7 444334578888875 788998888643 678888889999999999999999
Q ss_pred ccCchHHHHHH-cCCCCCccchhhhHHhhhcCC
Q psy11047 392 LQTNFPNFILS-YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 392 L~RrfR~iar~-~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++ +|+ ++++|.+|+.+
T Consensus 172 -------la~~~~~~-------~li~De~~~~~ 190 (404)
T 1e5e_A 172 -------DAHSQEGV-------LVIADNTFCSP 190 (404)
T ss_dssp -------HHHTSTTC-------EEEEECTTTCT
T ss_pred -------HHHhhcCC-------EEEEECCCchh
Confidence 9999 999 99999999876
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-10 Score=127.36 Aligned_cols=137 Identities=10% Similarity=-0.068 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
....++...+.+|+.+..|.+-. ....++|+|||+|+..++.+.. .+| -.|++
T Consensus 68 ~g~~~lr~~ia~~~~~~~g~~~~--------~~~i~~t~g~~~al~~~~~~l~----------~~g---------d~Vlv 120 (385)
T 1b5p_A 68 AGIPELREALAEKFRRENGLSVT--------PEETIVTVGGSQALFNLFQAIL----------DPG---------DEVIV 120 (385)
T ss_dssp TCCHHHHHHHHHHHHHTTCCCCC--------GGGEEEESHHHHHHHHHHHHHC----------CTT---------CEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCC--------hHHEEEcCChHHHHHHHHHHhc----------CCC---------CEEEE
Confidence 34578888888899888886421 1268999999999987765421 122 23666
Q ss_pred cCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcc
Q psy11047 307 SDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMI 381 (943)
Q Consensus 307 S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~ 381 (943)
+.-+|.++..++...+.+++.++.+. .+.+|+++|+++|+.. +.+|+.+...+.+|.+-| +++|++
T Consensus 121 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~NPtG~~~~~~~l~~i~~--- 191 (385)
T 1b5p_A 121 LSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNNPTGAVYPKEVLEALAR--- 191 (385)
T ss_dssp EESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHH---
T ss_pred cCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCC------CEEEEEeCCCCCCCCCcCHHHHHHHHH---
Confidence 77789888888754445888899874 5689999999888643 556777778888999855 888888
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.+|+.+
T Consensus 192 -----------------~~~~~~~-------~li~De~~~~~ 209 (385)
T 1b5p_A 192 -----------------LAVEHDF-------YLVSDEIYEHL 209 (385)
T ss_dssp -----------------HHHHTTC-------EEEEECTTTTC
T ss_pred -----------------HHHHcCC-------EEEEEccchhc
Confidence 9999999 99999999865
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.7e-11 Score=130.88 Aligned_cols=300 Identities=12% Similarity=0.090 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
.++..+.+++++++|.+.. -++++|||+|+..++.+.. .+| -.|++++.+
T Consensus 78 ~~~~~a~~~~~~~~~~~~~-----------~v~~~~Gs~a~~~al~~~~----------~~g---------d~Vi~~~~~ 127 (425)
T 3ecd_A 78 EVEALAIERVKRLFNAGHA-----------NVQPHSGAQANGAVMLALA----------KPG---------DTVLGMSLD 127 (425)
T ss_dssp HHHHHHHHHHHHHHTCSEE-----------ECCCSSHHHHHHHHHHHHC----------CTT---------CEEEEECC-
T ss_pred HHHHHHHHHHHHHhCCCCc-----------eeecCchHHHHHHHHHHcc----------CCC---------CEEEEcccc
Confidence 5666667889999998642 3569999999988876531 122 246777888
Q ss_pred chHHH-HHHH--H-CC-ccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 311 HSSVE-KAGL--I-GL-VNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 311 HySv~-KAa~--L-G~-~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
|.++. .++. + |. ...+.++.+ +.+.+|+++|+++|.... +.+|+.+. +..|...++++|.+
T Consensus 128 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~--~~~~~~~~l~~i~~------ 194 (425)
T 3ecd_A 128 AGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHK-----PSLIIAGF--SAYPRKLDFARFRA------ 194 (425)
T ss_dssp -----------------CEEEEECCCTTTSSCCHHHHHHHHHHHC-----CSEEEEEC--SCCCSCCCHHHHHH------
T ss_pred cccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcC-----CcEEEEcc--ccCCCcCCHHHHHH------
Confidence 88732 3332 2 22 244556655 458999999999997532 44555543 34488899999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccccc
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV 464 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p 464 (943)
+|++||+ |+++|.++.....+ .+. ...
T Consensus 195 --------------l~~~~~~-------~li~De~~~~g~~~-------------------------------~~~-~~~ 221 (425)
T 3ecd_A 195 --------------IADSVGA-------KLMVDMAHIAGVIA-------------------------------AGR-HAN 221 (425)
T ss_dssp --------------HHHHHTC-------EEEEECGGGHHHHH-------------------------------TTS-SCC
T ss_pred --------------HHHHcCC-------EEEEECcChHhhhh-------------------------------ccc-ccC
Confidence 9999999 99999996433011 000 000
Q ss_pred chhhhhcCCCCeeEEEEcCCCccC-ccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHH
Q psy11047 465 PASLRIQGLGRAQNFTIVPSSLLR-VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGI 542 (943)
Q Consensus 465 ~~r~~l~Gie~ADSItiDpHK~L~-vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~ 542 (943)
.++.+|.++.++||++. .+- +.+. ...+.....-. .....+..++-. .....++..+.....
T Consensus 222 -------~~~~~di~~~s~sK~l~g~~~-g~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~a~~~~~~ 285 (425)
T 3ecd_A 222 -------PVEHAHVVTSTTHKTLRGPRG-GFVL---TNDEEIAKKIN-----SAVFPGLQGGPLMHVIAGKAVAFGEALT 285 (425)
T ss_dssp -------GGGTCSEEEEESSGGGCCCSC-EEEE---ESCHHHHHHHH-----HHHC-----CCCHHHHHHHHHHHHHHTS
T ss_pred -------chhcCcEEEecCCcccCCCCc-EEEE---eCCHHHHHHHH-----hhhCccccCCccHHHHHHHHHHHHHHHH
Confidence 01236899999999984 221 1110 00000000000 000000011111 111222223322222
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEE
Q psy11047 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI 622 (943)
Q Consensus 543 ~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eI 622 (943)
.++.+..++ ..++++++.+.|.+ .++++
T Consensus 286 ~~~~~~~~~---------------------------------------------------~~~~~~~l~~~L~~-~g~~~ 313 (425)
T 3ecd_A 286 DDFKTYIDR---------------------------------------------------VLANAQALGDVLKA-GGVDL 313 (425)
T ss_dssp HHHHHHHHH---------------------------------------------------HHHHHHHHHHHHHH-TTCEE
T ss_pred HhHHHHHHH---------------------------------------------------HHHHHHHHHHHHHh-CCCee
Confidence 333333333 23456667777766 47888
Q ss_pred ecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc-------CCCcEEEEe----ecCCCCHHHHHHHHHHHHH
Q psy11047 623 PAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL-------RIQGLGRAQ----NFTRTTNDDITRDWNEIRN 690 (943)
Q Consensus 623 l~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~-------~g~~~lR~v----~~~~tt~edId~ll~~I~~ 690 (943)
..+ ...+++.+.+.+.......+.+.|.++|.+ +.+... .....+|+. +....++++|+++++.|++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~-v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~ 392 (425)
T 3ecd_A 314 VTGGTDNHLLLVDLRPKGLKGAQVEQALERAGIT-CNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILE 392 (425)
T ss_dssp GGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEE-CEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCE-ecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHH
Confidence 754 467778877754222246677778777854 432111 123479996 4555669999999999998
Q ss_pred HHHHH
Q psy11047 691 TATEI 695 (943)
Q Consensus 691 ~~~~l 695 (943)
+.++.
T Consensus 393 ~l~~~ 397 (425)
T 3ecd_A 393 VFEAL 397 (425)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 87665
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-11 Score=133.38 Aligned_cols=135 Identities=13% Similarity=0.008 Sum_probs=95.0
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.|..++...+++. .+++++|.+ ..++|+|||+|+..++.+.. .+| +
T Consensus 70 ~y~~~~~~~~l~~----~la~~~~~~------------~~~~~~~gt~a~~~al~~l~----------~~g--------d 115 (456)
T 2ez2_A 70 AYAGSENFYHLER----TVQELFGFK------------HIVPTHQGRGAENLLSQLAI----------KPG--------Q 115 (456)
T ss_dssp CSSSCHHHHHHHH----HHHHHHCCS------------EEEEESSHHHHHHHHHHHHC----------CTT--------C
T ss_pred hcccChhHHHHHH----HHHHHhCCC------------cEEEeCCcHHHHHHHHHHhC----------CCC--------C
Confidence 4555666666665 456777753 47999999999988886541 122 3
Q ss_pred eEEEecCCCc-hHHHHHHHHCCccEEEEecCC----------CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC-cccc
Q psy11047 302 LVAYCSDQAH-SSVEKAGLIGLVNMRYIESDD----------KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP-AFLV 369 (943)
Q Consensus 302 ~vV~~S~~aH-ySv~KAa~LG~~~v~~Vp~D~----------~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT-~tGa 369 (943)
+++..+| .+...++.+.+..++.++++. ++.+|+++|+++|+.... ..+.+|+.+...+ .+|.
T Consensus 116 ---i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~--~~~~~v~l~~p~n~ptG~ 190 (456)
T 2ez2_A 116 ---YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA--ENIAYICLAVTVNLAGGQ 190 (456)
T ss_dssp ---EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSB
T ss_pred ---EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccc--cceeEEEEeccCCCCCCc
Confidence 3456677 666777755444778888763 278999999999986531 1135566654444 6787
Q ss_pred ccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 370 VDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 370 IDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
+-| +++|.+ +|++||+ |+++|++|+.
T Consensus 191 ~~~~~~l~~i~~--------------------la~~~~i-------~li~De~~~~ 219 (456)
T 2ez2_A 191 PVSMANMRAVRE--------------------LTEAHGI-------KVFYDATRCV 219 (456)
T ss_dssp CCCHHHHHHHHH--------------------HHHHTTC-------CEEEECTTHH
T ss_pred cCCHHHHHHHHH--------------------HHHHcCC-------eEEEEccccc
Confidence 655 889998 9999999 9999999875
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-10 Score=124.95 Aligned_cols=137 Identities=12% Similarity=-0.084 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHh-CCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 233 EIITMNWLGKMI-GLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 233 E~~Vi~wLa~Ll-G~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
...+.+.+++++ | +.. ...+||+|||+|+..++..||... + +.-+++.+..-|
T Consensus 86 ~~~l~~~la~~~~~-~~~---------~~v~~~~g~~~a~~~~~~~a~~~~-~---------------~~~vi~~~p~y~ 139 (426)
T 1sff_A 86 YLELCEIMNQKVPG-DFA---------KKTLLVTTGSEAVENAVKIARAAT-K---------------RSGTIAFSGAYH 139 (426)
T ss_dssp HHHHHHHHHHHSSC-SSC---------EEEEEESSHHHHHHHHHHHHHHHH-T---------------CCEEEEETTCCC
T ss_pred HHHHHHHHHHhCCc-ccc---------cEEEEeCchHHHHHHHHHHHHHhh-C---------------CCeEEEECCCcC
Confidence 345666778888 4 221 257999999999999988776421 1 123555666677
Q ss_pred hHHHHHHHH-CCc------------cEEEEecCC-----CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc-
Q psy11047 312 SSVEKAGLI-GLV------------NMRYIESDD-----KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS- 372 (943)
Q Consensus 312 ySv~KAa~L-G~~------------~v~~Vp~D~-----~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp- 372 (943)
.+...++.+ |.. .++.++.+. .+.+|+++|+++|+... .+..+.+|+.+....++|.+.|
T Consensus 140 ~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~ntG~~~~~ 218 (426)
T 1sff_A 140 GRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA-APEDIAAIVIEPVQGEGGFYASS 218 (426)
T ss_dssp CSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC-CGGGEEEEEECSBCTTTTSCBCC
T ss_pred CCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc-CCCceEEEEEecccCCCCcccCC
Confidence 666666543 321 277788753 34589999999997421 0112556666544444896666
Q ss_pred ---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 ---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 ---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++|.+ +|++||+ ++++|.+|+++
T Consensus 219 ~~~l~~l~~--------------------l~~~~~~-------~li~De~~~~~ 245 (426)
T 1sff_A 219 PAFMQRLRA--------------------LCDEHGI-------MLIADEVQSGA 245 (426)
T ss_dssp HHHHHHHHH--------------------HHHHHTC-------EEEEECTTTTT
T ss_pred HHHHHHHHH--------------------HHHHcCC-------EEEEechhhcc
Confidence 888888 9999999 99999999965
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-11 Score=133.87 Aligned_cols=300 Identities=10% Similarity=0.050 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
...+|..+.+++++++|.+.. -+++++||+||..++.+.. .+| -.|+++.
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~-----------~v~~~sGs~a~~~a~~~~~----------~~g---------d~v~~~~ 123 (420)
T 3gbx_A 74 VDVVEQLAIDRAKELFGADYA-----------NVQPHSGSQANFAVYTALL----------QPG---------DTVLGMN 123 (420)
T ss_dssp CHHHHHHHHHHHHHHHTCSEE-----------ECCCSSHHHHHHHHHHHHC----------CTT---------CEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCc-----------eeEecCcHHHHHHHHHHhc----------CCC---------CEEEecc
Confidence 456788888999999998643 3445667999988876531 122 2466777
Q ss_pred CCchHHHHH-HH---HCC-ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 309 QAHSSVEKA-GL---IGL-VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 309 ~aHySv~KA-a~---LG~-~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
.+|.+.... .. .|. .....++.++++.+|+++|+++|+... +.+|+.+.++ .|...|+++|.+
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~--~~~~~~l~~l~~----- 191 (420)
T 3gbx_A 124 LAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHK-----PKMIIGGFSA--YSGVVDWAKMRE----- 191 (420)
T ss_dssp EC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHC-----CSEEEECCTT--CCSCCCHHHHHH-----
T ss_pred hhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcC-----CeEEEEecCc--cCCccCHHHHHH-----
Confidence 788774422 21 222 245566778889999999999998741 4566665433 367888999999
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccc
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHC 463 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~ 463 (943)
+|++||+ ++++|.+++.. .+ . .|. .
T Consensus 192 ---------------l~~~~~~-------~li~De~~~~~-~~--~----------------------------~~~--~ 216 (420)
T 3gbx_A 192 ---------------IADSIGA-------YLFVDMAHVAG-LI--A----------------------------AGV--Y 216 (420)
T ss_dssp ---------------HHHHTTC-------EEEEECTTTHH-HH--H----------------------------TTS--S
T ss_pred ---------------HHHHcCC-------EEEEECCcchh-ce--e----------------------------ccc--C
Confidence 9999999 99999997543 11 0 000 0
Q ss_pred cchhhhhcCCCCeeEEEEcCCCccC-ccCcchhhhhcccCc---cccccCCCCcccccCccccCCCCC-cchHHHHHHHH
Q psy11047 464 VPASLRIQGLGRAQNFTIVPSSLLR-VKNSGALHRTFNVEP---LYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIR 538 (943)
Q Consensus 464 p~~r~~l~Gie~ADSItiDpHK~L~-vr~~~~L~~af~~~p---~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr 538 (943)
+. .+..+|.++.++||+++ .+. +.+. ... .+...-... ...++ .++-. .....++..+.
T Consensus 217 ~~------~~~~~di~~~s~sK~~~g~~g-g~~~----~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~a~~~a~~ 280 (420)
T 3gbx_A 217 PN------PVPHAHVVTTTTHKTLAGPRG-GLIL----AKGGDEELYKKLNSA----VFPSA-QGGPLMHVIAGKAVALK 280 (420)
T ss_dssp CC------STTTSSEEEEESSGGGCSCSC-EEEE----ESSCCHHHHHHHHHH----HC-----CCCCHHHHHHHHHHHH
T ss_pred Cc------ccccCCEEEeecccCCCCCCc-eEEE----EcCCcHHHHHHhhhh----cCCCC-CCCcchhHHHHHHHHHH
Confidence 00 12347999999999984 322 1110 000 000000000 00000 01111 11112222222
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCC
Q psy11047 539 NFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDP 618 (943)
Q Consensus 539 ~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p 618 (943)
.....++.+..++ ..++++++.+.|.+ .
T Consensus 281 ~~~~~~~~~~~~~---------------------------------------------------~~~~~~~l~~~L~~-~ 308 (420)
T 3gbx_A 281 EAMEPEFKVYQQQ---------------------------------------------------VAKNAKAMVEVFLN-R 308 (420)
T ss_dssp HTTSHHHHHHHHH---------------------------------------------------HHHHHHHHHHHHHH-T
T ss_pred HHHhHhHHHHHHH---------------------------------------------------HHHHHHHHHHHHHh-c
Confidence 2222333333333 23456677777766 5
Q ss_pred CeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEEeec-------ccCCCcEEEEeecC----CCCHHHHHHHHH
Q psy11047 619 RFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA-------SLRIQGLGRAQNFT----RTTNDDITRDWN 686 (943)
Q Consensus 619 ~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t-------~~~g~~~lR~v~~~----~tt~edId~ll~ 686 (943)
+++++.+ ...+++.+.+.+...-...+.+.|.++|. ++.+. ..-+...+|+.+.. ..++++|+++++
T Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~ 387 (420)
T 3gbx_A 309 GYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANI-TVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAG 387 (420)
T ss_dssp TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTE-ECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred CCeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCc-EeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHH
Confidence 7888754 46777777775422124567777777775 44431 11223459995433 356899999999
Q ss_pred HHHHHHHH
Q psy11047 687 EIRNTATE 694 (943)
Q Consensus 687 ~I~~~~~~ 694 (943)
.|+++..+
T Consensus 388 ~l~~~l~~ 395 (420)
T 3gbx_A 388 WMCDVLDN 395 (420)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99887654
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.4e-11 Score=127.46 Aligned_cols=287 Identities=10% Similarity=-0.008 Sum_probs=171.5
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+.+.+|+++|.+.+ ..++|+|||+++..++.+.. .+| +-.|++++-+|.+.
T Consensus 62 ~lr~~la~~~~~~~~----------~v~~~~G~~~ai~~~~~~~~----------~~g--------~d~Vl~~~p~~~~~ 113 (356)
T 1fg7_A 62 AVIENYAQYAGVKPE----------QVLVSRGADEGIELLIRAFC----------EPG--------KDAILYCPPTYGMY 113 (356)
T ss_dssp HHHHHHHHHHTSCGG----------GEEEESHHHHHHHHHHHHHC----------CTT--------TCEEEECSSSCTHH
T ss_pred HHHHHHHHHhCCChH----------HEEEcCCHHHHHHHHHHHHh----------CCC--------CCEEEEeCCChHHH
Confidence 355567777888654 58999999999987766531 111 02467778899988
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++..-+.+++.+|.++++.+|+++|+++++ + +.+|+.+...+.+|.+-|.+++.+
T Consensus 114 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~------~~~v~l~~p~nptG~~~~~~~l~~---------------- 170 (356)
T 1fg7_A 114 SVSAETIGVECRTVPTLDNWQLDLQGISDKLD-G------VKVVYVCSPNNPTGQLINPQDFRT---------------- 170 (356)
T ss_dssp HHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT-T------EEEEEEESSCTTTCCCCCHHHHHH----------------
T ss_pred HHHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc-C------CCEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 88875333478888988788999999988875 2 566777788888999977666555
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLG 474 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie 474 (943)
+...|+ +|+ ++++|.+|+.+ ... ......+. ..
T Consensus 171 -l~~~~~-~~~-------~li~De~~~~~-~~~------------------------------------~~~~~~~~-~~ 203 (356)
T 1fg7_A 171 -LLELTR-GKA-------IVVADEAYIEF-CPQ------------------------------------ASLAGWLA-EY 203 (356)
T ss_dssp -HHHHHT-TTC-------EEEEECTTGGG-SGG------------------------------------GCSGGGTT-TC
T ss_pred -HHHhCC-CCC-------EEEEEccchhh-cCC------------------------------------CcHHHHHh-hC
Confidence 011566 899 99999999865 100 00000011 11
Q ss_pred CeeEEEEcCCCccCc---cCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy11047 475 RAQNFTIVPSSLLRV---KNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIRE 551 (943)
Q Consensus 475 ~ADSItiDpHK~L~v---r~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~ 551 (943)
..+-+..++||+++. |-+..+ .++..+..-.. -...|+ ...+..++....+...++. .+++
T Consensus 204 ~~~i~~~s~sK~~g~~G~r~G~~~-----~~~~~~~~l~~----~~~~~~------~~~~~~~a~~~~l~~~~~~-~~~~ 267 (356)
T 1fg7_A 204 PHLAILRTLSKAFALAGLRCGFTL-----ANEEVINLLMK----VIAPYP------LSTPVADIAAQALSPQGIV-AMRE 267 (356)
T ss_dssp TTEEEEEESSSTTCCGGGCCEEEE-----ECHHHHHHHHH----HSCSSC------SCHHHHHHHHHHTSHHHHH-HHHH
T ss_pred CCEEEEecchHhhcCchhhhEEEE-----eCHHHHHHHHH----hcCCCC------CCHHHHHHHHHHhcCccHH-HHHH
Confidence 236778899999873 222111 01111100000 000111 1233344444444333331 1222
Q ss_pred HHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEE
Q psy11047 552 IFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMV 631 (943)
Q Consensus 552 ~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV 631 (943)
..+ . ..+.++++.+.|++.+++....+...+.+
T Consensus 268 ~~~-------------------~----------------------------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 300 (356)
T 1fg7_A 268 RVA-------------------Q----------------------------IIAEREYLIAALKEIPCVEQVFDSETNYI 300 (356)
T ss_dssp HHH-------------------H----------------------------HHHHHHHHHHHHHHSTTEEEECCCSSSEE
T ss_pred HHH-------------------H----------------------------HHHHHHHHHHHHHhCCCceEECCCCCeEE
Confidence 110 0 23456677777877776544456677788
Q ss_pred EEEecCCChHHHHHHHHHhccCcEEEee-ccc-CCCcEEEEeecCCCCHHHHHHHHHHHHH
Q psy11047 632 VIRLLGENILTEKLLKRLNSKGRLHCVP-ASL-RIQGLGRAQNFTRTTNDDITRDWNEIRN 690 (943)
Q Consensus 632 ~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~-t~~-~g~~~lR~v~~~~tt~edId~ll~~I~~ 690 (943)
.+++. + ..++.++|.++|. .+.+ ... ...+++|++++ +++|++++++.|++
T Consensus 301 ~~~~~--~--~~~l~~~L~~~gI-~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 301 LARFK--A--SSAVFKSLWDQGI-ILRDQNKQPSLSGCLRITVG---TREESQRVIDALRA 353 (356)
T ss_dssp EEEET--T--HHHHHHHHHHTTE-ECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHT
T ss_pred EEECC--C--HHHHHHHHHHCCE-EEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHh
Confidence 88875 2 4678888877775 4444 222 12458999765 58999999988865
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.2e-11 Score=136.59 Aligned_cols=126 Identities=11% Similarity=0.012 Sum_probs=94.1
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++| +++++++|.+. .+++++|++|+..++.+.. .+| -.|
T Consensus 112 ~~~~~~~l~----~~lA~l~g~~~------------~v~~~sG~~Ai~~al~~l~----------~~G---------d~V 156 (445)
T 1qgn_A 112 GNPTTVVLE----EKISALEGAES------------TLLMASGMCASTVMLLALV----------PAG---------GHI 156 (445)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE------------EEEESCHHHHHHHHHHHHS----------CSS---------CEE
T ss_pred CChHHHHHH----HHHHHHhCCCc------------EEEeCCHHHHHHHHHHHHh----------CCC---------CEE
Confidence 345555555 56788888752 4677777899988876421 122 246
Q ss_pred EecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCc-EEEEEecCCCcccccccHHHhhhh
Q psy11047 305 YCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIP-FFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 305 ~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P-~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
+++...|.++...+ ...+..++.++.+ |+++|+++|+++ + .+|+....++.+|.+.|+++|++
T Consensus 157 i~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~ai~~~------tv~lV~le~p~NptG~v~dl~~I~~- 224 (445)
T 1qgn_A 157 VTTTDCYRKTRIFIETILPKMGITATVIDPA-----DVGALELALNQK------KVNLFFTESPTNPFLRCVDIELVSK- 224 (445)
T ss_dssp EEETTSCHHHHHHHHHTGGGGTCEEEEECSS-----CHHHHHHHHHHS------CEEEEEEESSCTTTCCCCCHHHHHH-
T ss_pred EEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHHhccC------CCCEEEEeCCCCCCCcccCHHHHHH-
Confidence 77788898877653 2223477888774 899999999864 4 67888888999999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|++|+..
T Consensus 225 -------------------la~~~g~-------~livD~a~~~~ 242 (445)
T 1qgn_A 225 -------------------LCHEKGA-------LVCIDGTFATP 242 (445)
T ss_dssp -------------------HHHHTTC-------EEEEECTTTCT
T ss_pred -------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999754
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.9e-11 Score=128.90 Aligned_cols=142 Identities=6% Similarity=-0.052 Sum_probs=106.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|.......++...+.+|+.+.+|++-.. ....++|+|||+|+..++.+.. .+| -
T Consensus 63 y~~~~g~~~lr~~la~~~~~~~g~~~~~-------~~~i~~~~g~~~a~~~~~~~~~----------~~g---------d 116 (422)
T 3fvs_A 63 YTKTFGYPPLTKILASFFGELLGQEIDP-------LRNVLVTVGGYGALFTAFQALV----------DEG---------D 116 (422)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHTCCCCH-------HHHEEEESHHHHHHHHHHHHHC----------CTT---------C
T ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCCC-------CCcEEEECChHHHHHHHHHHHc----------CCC---------C
Confidence 3333445788889999999999976320 0158999999999988876531 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC------------CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD------------KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~------------~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI 370 (943)
.|++..-+|.++..++...+.+++.++.+. ++.+|+++|+++++.+ +.+|+.+...+.+|.+
T Consensus 117 ~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~nptG~~ 190 (422)
T 3fvs_A 117 EVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR------TKALVLNTPNNPLGKV 190 (422)
T ss_dssp EEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTT------EEEEEEESSCTTTCCC
T ss_pred EEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCC------ceEEEECCCCCCCCcC
Confidence 366677788888887754445788888865 3479999999988643 5677777788889988
Q ss_pred c---cHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 371 D---SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 371 D---pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
- ++++|++ +|++||+ ++++|.+|+++
T Consensus 191 ~~~~~l~~i~~--------------------~~~~~~~-------~li~De~~~~~ 219 (422)
T 3fvs_A 191 FSREELELVAS--------------------LCQQHDV-------VCITDEVYQWM 219 (422)
T ss_dssp CCHHHHHHHHH--------------------HHHHHTC-------EEEEECTTTTC
T ss_pred CCHHHHHHHHH--------------------HHHHcCc-------EEEEEccchhh
Confidence 7 4888888 9999999 99999999875
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-11 Score=127.78 Aligned_cols=137 Identities=6% Similarity=-0.177 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec
Q psy11047 228 ACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307 (943)
Q Consensus 228 aateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S 307 (943)
...+++..+.+|+.+.+|.+.. ....+||+|||+++..++.+.. .++ ..-.|++.
T Consensus 60 g~~~lr~~la~~l~~~~g~~~~--------~~~i~~t~g~~~al~~~~~~~~----------~~~-------~gd~vl~~ 114 (376)
T 3ezs_A 60 FEESLRAAQRGFFKRRFKIELK--------ENELISTLGSREVLFNFPSFVL----------FDY-------QNPTIAYP 114 (376)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCC--------GGGEEEESSSHHHHHHHHHHHT----------TTC-------SSCEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCC--------HHHEEECcCcHHHHHHHHHHHc----------CCC-------CCCEEEEe
Confidence 3578889999999999998421 1368999999999988876532 120 01246677
Q ss_pred CCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccc
Q psy11047 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKG 384 (943)
Q Consensus 308 ~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d 384 (943)
.-+|.++..++...+.+++.++.++++.+++ +|++++..+ +.+|+.+...+.+|.+-| +.+|.+
T Consensus 115 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~i~~------ 181 (376)
T 3ezs_A 115 NPFYQIYEGAAKFIKAKSLLMPLTKENDFTP-SLNEKELQE------VDLVILNSPNNPTGRTLSLEELISWVK------ 181 (376)
T ss_dssp ESCCTHHHHHHHHTTCEEEEEECCGGGTSCC-CCCHHHHHH------CSEEEECSSCTTTCCCCCHHHHHHHHH------
T ss_pred cCCcHhHHHHHHHcCCEEEEcccCCCCCcch-hHHhhhccC------CCEEEEcCCCCCcCCCCCHHHHHHHHH------
Confidence 8899998888865445888999887656666 777777654 456666777888998866 555666
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.+|+.+
T Consensus 182 --------------~~~~~~~-------~li~De~~~~~ 199 (376)
T 3ezs_A 182 --------------LALKHDF-------ILINDECYSEI 199 (376)
T ss_dssp --------------HHHHHTC-------EEEEECTTTTC
T ss_pred --------------HHHHcCc-------EEEEEccchhh
Confidence 8999999 99999999876
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.9e-11 Score=128.93 Aligned_cols=137 Identities=8% Similarity=-0.107 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec
Q psy11047 228 ACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307 (943)
Q Consensus 228 aateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S 307 (943)
...+++..+.+|+.+.+|.+... ....++|+|||+|+..++.+.. .+| -.|++.
T Consensus 62 g~~~l~~~la~~~~~~~~~~~~~-------~~~i~~~~g~~~a~~~~~~~~~----------~~g---------d~vl~~ 115 (410)
T 3e2y_A 62 GHPALVKALSCLYGKIYQRQIDP-------NEEILVAVGAYGSLFNSIQGLV----------DPG---------DEVIIM 115 (410)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCT-------TTSEEEESHHHHHHHHHHHHHC----------CTT---------CEEEEE
T ss_pred ChHHHHHHHHHHHHHHhCCCCCC-------CCCEEEeCCcHHHHHHHHHHhc----------CCC---------CEEEEe
Confidence 45788889999999998875320 1368999999999988876531 122 236667
Q ss_pred CCCchHHHHHHHHCCccEEEEecC-----------CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc---ccH
Q psy11047 308 DQAHSSVEKAGLIGLVNMRYIESD-----------DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV---DSY 373 (943)
Q Consensus 308 ~~aHySv~KAa~LG~~~v~~Vp~D-----------~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI---DpL 373 (943)
.-+|.+...++...+.+++.++.+ .++.+|+++|+++++.+ +.+|+.+...+.+|.+ +++
T Consensus 116 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l 189 (410)
T 3e2y_A 116 VPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSK------TKAIILNTPHNPLGKVYTRQEL 189 (410)
T ss_dssp ESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHH
T ss_pred CCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCC------ceEEEEeCCCCCCCcCcCHHHH
Confidence 778888887775444477788765 45678999999888543 5677777788889998 678
Q ss_pred HHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 374 CCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 374 ~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++|++ +|++||+ ++++|.+|+++
T Consensus 190 ~~l~~--------------------~~~~~~~-------~li~De~~~~~ 212 (410)
T 3e2y_A 190 QVIAD--------------------LCVKHDT-------LCISDEVYEWL 212 (410)
T ss_dssp HHHHH--------------------HHHHHTC-------EEEEECTTTTC
T ss_pred HHHHH--------------------HHHHcCc-------EEEEEhhhhhc
Confidence 89998 9999999 99999999876
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-10 Score=128.04 Aligned_cols=139 Identities=9% Similarity=-0.009 Sum_probs=101.6
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
.+...+++..+.+|+.+.+|.+... ....++|+|||+|+..++.+.. .+| -.|+
T Consensus 74 ~~g~~~l~~~ia~~~~~~~g~~~~~-------~~~v~~t~g~~~a~~~~~~~~~----------~~g---------d~Vl 127 (412)
T 2x5d_A 74 SRGIPRLRRAISHWYRDRYDVQIDP-------ESEAIVTIGSKEGLAHLMLATL----------DHG---------DTIL 127 (412)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCT-------TTSEEEESCHHHHHHHHHHHHC----------CTT---------CEEE
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCC-------CcCEEEcCChHHHHHHHHHHhC----------CCC---------CEEE
Confidence 3446788888888888888874210 0268999999999988876531 122 2467
Q ss_pred ecCCCchHHHHHHHHCCccEEEEecCCC-C-CcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhc
Q psy11047 306 CSDQAHSSVEKAGLIGLVNMRYIESDDK-L-SLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAM 380 (943)
Q Consensus 306 ~S~~aHySv~KAa~LG~~~v~~Vp~D~~-g-rmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~ 380 (943)
++.-+|.++..++...+.+++.++.+++ + .+|+++|+++++.+ +.+|+.+...+.+|.+-| +++|.+
T Consensus 128 ~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~-- 199 (412)
T 2x5d_A 128 VPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPK------PRMMILGFPSNPTAQCVELDFFERVVA-- 199 (412)
T ss_dssp EEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESC------CSEEEEESSCTTTCCCCCHHHHHHHHH--
T ss_pred EcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccC------ceEEEECCCCCCCCCcCCHHHHHHHHH--
Confidence 7788999988887533347888888764 3 47889998887632 445666667777898865 677777
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.+|+++
T Consensus 200 ------------------~~~~~~~-------~li~De~~~~~ 217 (412)
T 2x5d_A 200 ------------------LAKQYDV-------MVVHDLAYADI 217 (412)
T ss_dssp ------------------HHHHHTC-------EEEEECTTTTC
T ss_pred ------------------HHHHcCC-------EEEEecccccc
Confidence 9999999 99999999876
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.4e-11 Score=130.95 Aligned_cols=142 Identities=4% Similarity=-0.122 Sum_probs=105.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|...+...+++..+.+|+.+.+|.+... ....++|+|||+|+..++.+.. .+| -
T Consensus 81 y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------~~~v~~t~G~~~al~~~~~~l~----------~~g---------d 134 (404)
T 2o1b_A 81 YGAFHGKEAFKQAIVDFYQRQYNVTLDK-------EDEVCILYGTKNGLVAVPTCVI----------NPG---------D 134 (404)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCCCCT-------TTSEEEESSHHHHHHHHHHHHC----------CTT---------C
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCC-------cccEEEcCCcHHHHHHHHHHhc----------CCC---------C
Confidence 3333456788889999999888986210 0268999999999988876531 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~ 378 (943)
.|++..-+|.+...++...+.+++.++.+.+ ..+|+++|+++|+.+ +.+|+.+..++.+|.+-| +++|.+
T Consensus 135 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~ 208 (404)
T 2o1b_A 135 YVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDK------TKLIYLTYPNNPTGSTATKEVFDEAIA 208 (404)
T ss_dssp EEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHH------EEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred EEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccC------ceEEEEcCCCCCCCccCCHHHHHHHHH
Confidence 3666677888888877544457888988753 468999999999643 566776767777898865 677777
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+++|.+|+.+
T Consensus 209 --------------------~~~~~~~-------~li~De~~~~~ 226 (404)
T 2o1b_A 209 --------------------KFKGTDT-------KIVHDFAYGAF 226 (404)
T ss_dssp --------------------HHTTSSC-------EEEEECTTTTC
T ss_pred --------------------HHHHcCC-------EEEEEccchhc
Confidence 9999999 99999999876
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-10 Score=130.69 Aligned_cols=127 Identities=12% Similarity=0.059 Sum_probs=97.4
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|...++|. ++++++|.+ ..+++++||+|+..++.+.. .+| -.
T Consensus 79 ~~~p~~~~le~----~lA~l~g~~------------~~v~~~sG~~Ai~~al~al~----------~~G---------d~ 123 (430)
T 3ri6_A 79 SSNPTVEDLEQ----RLKNLTGAL------------GVLALGSGMAAISTAILTLA----------RAG---------DS 123 (430)
T ss_dssp -CCHHHHHHHH----HHHHHHTCS------------EEEEESCHHHHHHHHHHHHC----------CTT---------CE
T ss_pred CCCHHHHHHHH----HHHHHHCCC------------cEEEECCHHHHHHHHHHHHh----------CCC---------CE
Confidence 34577777765 567888874 36788899999988876531 122 24
Q ss_pred EEecCCCchHHHHH----HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKA----GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KA----a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|++++..|.+.... +...+..++.|+.+ |+++|+++|+.+ +.+|+....++.+|.+.|+++|++
T Consensus 124 Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-----d~~~l~~ai~~~------t~~v~~e~p~NptG~~~dl~~i~~- 191 (430)
T 3ri6_A 124 VVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-----DSLAVEHACDET------TKLLFLETISNPQLQVADLEALSK- 191 (430)
T ss_dssp EEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH-
T ss_pred EEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhhCCC------CeEEEEECCCCCCCeecCHHHHHH-
Confidence 77888999887773 33334478888875 899999998753 678888888899999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|.+|+..
T Consensus 192 -------------------la~~~g~-------~livD~a~~~~ 209 (430)
T 3ri6_A 192 -------------------VVHAKGI-------PLVVDTTMTPP 209 (430)
T ss_dssp -------------------HHHTTTC-------CEEEECTTSCT
T ss_pred -------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999755
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-10 Score=120.75 Aligned_cols=281 Identities=7% Similarity=-0.054 Sum_probs=170.6
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+.+++++++|.+.+ ..++|+|||+|+..++.+.. .+| -.|+++.-+|.++
T Consensus 69 ~lr~~la~~~g~~~~----------~i~~t~g~~~al~~~~~~l~----------~~g---------d~Vl~~~p~~~~~ 119 (360)
T 3hdo_A 69 KLREVAGELYGFDPS----------WIIMANGSDEVLNNLIRAFA----------AEG---------EEIGYVHPSYSYY 119 (360)
T ss_dssp HHHHHHHHHHTCCGG----------GEEEESSHHHHHHHHHHHHC----------CTT---------CEEEEESSSCTHH
T ss_pred HHHHHHHHHhCcCcc----------eEEEcCCHHHHHHHHHHHHh----------CCC---------CEEEEcCCChHHH
Confidence 456677888887544 68999999999988776431 122 2366778899998
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++...+.+++.++.++++.+ +++++.+ .+.+++.+...+.+|.+-|++++.+
T Consensus 120 ~~~~~~~g~~~~~v~~~~~~~~--~~l~~~~--------~~~~v~i~~p~nptG~~~~~~~l~~---------------- 173 (360)
T 3hdo_A 120 GTLAEVQGARVRTFGLTGDFRI--AGFPERY--------EGKVFFLTTPNAPLGPSFPLEYIDE---------------- 173 (360)
T ss_dssp HHHHHHHTCEEEEECBCTTSSB--TTCCSSB--------CSSEEEEESSCTTTCCCCCHHHHHH----------------
T ss_pred HHHHHHCCCEEEEeeCCCCCCH--HHHHhhc--------CCCEEEEeCCCCCCCCCcCHHHHHH----------------
Confidence 8877543348889999877766 3332211 1346777778888999999999999
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLG 474 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie 474 (943)
+|+++|+ ++++|.+|+.+ .-. ...+ . ... .
T Consensus 174 ----l~~~~~~-------~li~De~~~~~-~~~---------------------------------~~~~-~---~~~-~ 203 (360)
T 3hdo_A 174 ----LARRCAG-------MLVLDETYAEF-AES---------------------------------NALE-L---VRR-H 203 (360)
T ss_dssp ----HHHHBSS-------EEEEECTTGGG-SSC---------------------------------CCTH-H---HHH-C
T ss_pred ----HHHHCCC-------EEEEECChHhh-CCc---------------------------------chhH-H---hcc-C
Confidence 9999999 99999999864 110 0011 0 000 1
Q ss_pred CeeEEEEcCCCccCccC---cchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHH-HHHHHHH
Q psy11047 475 RAQNFTIVPSSLLRVKN---SGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIK-GLQKHIR 550 (943)
Q Consensus 475 ~ADSItiDpHK~L~vr~---~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~-Gl~~~I~ 550 (943)
..+-+..++||+++... ...+ ..+..+..-... ...|+ ...+..++....+-.. .+.+..+
T Consensus 204 ~~~i~~~s~sK~~g~~G~r~G~~~-----~~~~~~~~~~~~----~~~~~------~~~~~~~a~~~~l~~~~~~~~~~~ 268 (360)
T 3hdo_A 204 ENVVVTRTLSKSYSLAGMRIGLAI-----ARPEVIAALDKI----RDHYN------LDRLAQAACVAALRDQAYLSECCR 268 (360)
T ss_dssp SSEEEEEESTTTTSCTTSCCEEEE-----CCHHHHHHHHHH----SCSCC------SCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCEEEEecchHhhcCCccceeeEe-----eCHHHHHHHHHh----CCCCC------CCHHHHHHHHHHhcCHHHHHHHHH
Confidence 23466779999986221 2111 011111000000 00011 1223333333333211 1222222
Q ss_pred HHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccE
Q psy11047 551 EIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGM 630 (943)
Q Consensus 551 ~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~i 630 (943)
+ ..++++++.+.|.+. ++++. ++..+.
T Consensus 269 ~---------------------------------------------------~~~~~~~l~~~L~~~-~~~~~-~~~~~~ 295 (360)
T 3hdo_A 269 R---------------------------------------------------IRETREWFTTELRSI-GYDVI-PSQGNY 295 (360)
T ss_dssp H---------------------------------------------------HHHHHHHHHHHHHHT-TCEEC-CCSSSE
T ss_pred H---------------------------------------------------HHHHHHHHHHHHHHC-CCEEc-CCCccE
Confidence 2 234566777777766 77765 556777
Q ss_pred EEEEecCCChHHHHHHHHHhccCcEEEeecc-cCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 631 VVIRLLGENILTEKLLKRLNSKGRLHCVPAS-LRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 631 V~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~-~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+.|++.+.+ ...+.+.|.++|. ++.+.. ..+..++|++++ +++|+++++++|+++.+.
T Consensus 296 ~~~~~~~~~--~~~l~~~l~~~gi-~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 296 LFATPPDRD--GKRVYDGLYARKV-LVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp EEEECTTCC--HHHHHHHHHHTTE-ECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC-
T ss_pred EEEECCCCC--HHHHHHHHHHCCE-EEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhcc
Confidence 888876543 4678888888885 454432 233578999765 899999999999887643
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.6e-11 Score=130.71 Aligned_cols=153 Identities=5% Similarity=-0.108 Sum_probs=99.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCc----hhh-h
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPEL----EHA-E 297 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl----~~~-~ 297 (943)
|.......+++..+.+|+.+..|++-. ....+||+|||+|+..++.+.. .+|- ... +
T Consensus 79 y~~~~g~~~lr~~ia~~l~~~~g~~~~--------~~~i~~t~G~t~al~~~~~~l~----------~~gd~~~~~~~~~ 140 (444)
T 3if2_A 79 YSNPQGDSAFIDALVGFFNRHYDWNLT--------SENIALTNGSQNAFFYLFNLFG----------GAFVNEHSQDKES 140 (444)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCCCC--------GGGEEEESSHHHHHHHHHHHSS----------EEEECC-------
T ss_pred cCCCCCCHHHHHHHHHHHHhhcCCCCC--------HHHEEEecCcHHHHHHHHHHHh----------CCCcccccccccc
Confidence 444444678999999999888887532 1368999999999988876531 0110 000 0
Q ss_pred cCCceEEEec-CCCchHHHHHH----HH--CCccEEEEecCC-CC----CcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 298 INSRLVAYCS-DQAHSSVEKAG----LI--GLVNMRYIESDD-KL----SLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 298 i~~~~vV~~S-~~aHySv~KAa----~L--G~~~v~~Vp~D~-~g----rmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
......|+++ .-+|.+...++ .+ ....+..+++++ +| .+|+++|++++..... .+.+|+.+...+
T Consensus 141 ~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~---~~~~v~i~~p~n 217 (444)
T 3if2_A 141 KSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEG---RIGAICCSRPTN 217 (444)
T ss_dssp CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTT---CEEEEEEESSCT
T ss_pred ccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCC---CceEEEeCCCCC
Confidence 0000124443 44554444332 11 223677788775 33 7999999998543111 256777777788
Q ss_pred ccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 366 AFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 366 ~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+|.+-| +.+|.+ +|++||+ ++|+|.+|+..
T Consensus 218 ptG~~~~~~~l~~i~~--------------------~a~~~~~-------~li~De~~~~~ 251 (444)
T 3if2_A 218 PTGNVLTDEEMAHLAE--------------------IAKRYDI-------PLIIDNAYGMP 251 (444)
T ss_dssp TTCCCCCHHHHHHHHH--------------------HHHHTTC-------CEEEECTTCTT
T ss_pred CCCCcCCHHHHHHHHH--------------------HHHHCCC-------EEEEECCCCCc
Confidence 8999988 777777 9999999 99999999753
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-10 Score=123.91 Aligned_cols=129 Identities=9% Similarity=-0.088 Sum_probs=89.0
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+++++++|.| + ..++|+|||+|+..++.++|..... ..+| .+-+++.+..-|.+.
T Consensus 74 ~l~~~la~~~g~~-~----------~v~~~~g~t~a~~~~~~~~~~~~~~----~~~g-------~~~vl~~~~~y~~~~ 131 (375)
T 2eh6_A 74 ELAHKLVKHFWTE-G----------KVFFANSGTESVEAAIKLARKYWRD----KGKN-------KWKFISFENSFHGRT 131 (375)
T ss_dssp HHHHHHHHTSSSC-E----------EEEEESSHHHHHHHHHHHHHHHHHH----TTCC-------CCEEEEEBTCCCCSS
T ss_pred HHHHHHHhhcCCC-C----------eEEEeCchHHHHHHHHHHHHHHhcc----CCCC-------CCEEEEECCCcCCCc
Confidence 4567888989885 3 5899999999999998876532110 0122 123444444446655
Q ss_pred HHHHHHCCc------------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhhh
Q psy11047 315 EKAGLIGLV------------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLGT 378 (943)
Q Consensus 315 ~KAa~LG~~------------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~ 378 (943)
..+..++.. .+..++. +|+++|+++|+.+ +.+|+.+...+.+|.+.| +++|.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~------~~~v~~~~~~~~tG~~~~~~~~l~~i~~ 200 (375)
T 2eh6_A 132 YGSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLDEE------TAGIIIEVIQGEGGVNEASEDFLSKLQE 200 (375)
T ss_dssp HHHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCCTT------EEEEEECSEETTTTSEECCHHHHHHHHH
T ss_pred hhhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhcCC------eEEEEEeCccCCCCCcCCCHHHHHHHHH
Confidence 555544321 1444443 4899998887642 667777777777899977 899999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|++|+++
T Consensus 201 --------------------~~~~~~~-------~li~De~~~~~ 218 (375)
T 2eh6_A 201 --------------------ICKEKDV-------LLIIDEVQTGI 218 (375)
T ss_dssp --------------------HHHHHTC-------EEEEECTTTTT
T ss_pred --------------------HHHHhCC-------EEEEeccccCC
Confidence 9999999 99999999865
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-10 Score=124.27 Aligned_cols=141 Identities=11% Similarity=-0.030 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHHHHHhCCC-ccccccCcCCCC-cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 228 ACTELEIITMNWLGKMIGLP-EEFLHTKVDSPG-GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 228 aateLE~~Vi~wLa~LlG~p-~~fl~~~~~~~~-~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
...++...+.+|+++.+|.+ -. .. ..++|+|||+|+..++.+.. .+|- . ..+..|+
T Consensus 67 g~~~lr~~la~~l~~~~g~~~~~--------~~~~i~~t~g~~~al~~~~~~~~----------~~g~--~--~~~d~vl 124 (396)
T 3jtx_A 67 GLPELRQACANWLKRRYDGLTVD--------ADNEILPVLGSREALFSFVQTVL----------NPVS--D--GIKPAIV 124 (396)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCCC--------TTTSEEEESSHHHHHHHHHHHHC----------CC-------CCCCEEE
T ss_pred CcHHHHHHHHHHHHHhcCCCCCC--------CCCeEEEcCCcHHHHHHHHHHHh----------CCCC--c--cCCCEEE
Confidence 35788889999999999975 11 13 68999999999988876542 1210 0 0013567
Q ss_pred ecCCCchHHHHHHHHCCccEEEEecCCCC-CcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHH---hhhhcc
Q psy11047 306 CSDQAHSSVEKAGLIGLVNMRYIESDDKL-SLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCC---LGTAMI 381 (943)
Q Consensus 306 ~S~~aHySv~KAa~LG~~~v~~Vp~D~~g-rmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~e---Ia~~~~ 381 (943)
++.-+|.+...++...+.+++.++.++++ .+|+++|++++... +.+|+.+...+.+|.+-|.++ |.+
T Consensus 125 ~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~------~~~v~l~~p~nptG~~~~~~~l~~i~~--- 195 (396)
T 3jtx_A 125 SPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKR------TKLVFVCSPNNPSGSVLDLDGWKEVFD--- 195 (396)
T ss_dssp EEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHT------EEEEEEESSCTTTCCCCCHHHHHHHHH---
T ss_pred EcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccC------cEEEEEECCCCCCCCcCCHHHHHHHHH---
Confidence 77889998888875544588889886544 68999999999764 567777777888999876555 777
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.+|+.+
T Consensus 196 -----------------~~~~~~~-------~li~De~~~~~ 213 (396)
T 3jtx_A 196 -----------------LQDKYGF-------IIASDECYSEI 213 (396)
T ss_dssp -----------------HHHHHCC-------EEEEECTTTTC
T ss_pred -----------------HHHHcCC-------EEEEEcccccc
Confidence 9999999 99999999876
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-10 Score=125.72 Aligned_cols=130 Identities=10% Similarity=-0.053 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
..++.+++++++|.+ ..+||+|||+||..++.+++...... + .+| ++-+++.+..-|.
T Consensus 83 ~~~l~~~la~~~~~~------------~v~~~~gg~~a~~~al~~~~~~~~~~-~--~~g-------~~~vi~~~~~y~~ 140 (406)
T 4adb_A 83 VLRLAKKLIDATFAD------------RVFFCNSGAEANEAALKLARKFAHDR-Y--GSH-------KSGIVAFKNAFHG 140 (406)
T ss_dssp HHHHHHHHHHHSSCS------------EEEEESSHHHHHHHHHHHHHHHHHHH-T--CTT-------CCEEEEETTCCCC
T ss_pred HHHHHHHHHhhCCCC------------eEEEeCcHHHHHHHHHHHHHHHHHhc-C--CCC-------CcEEEEECCCcCC
Confidence 445667889998754 47999999999999998876532211 0 011 2446666777777
Q ss_pred HHHHHHHHCC------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc-----ccHHH
Q psy11047 313 SVEKAGLIGL------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV-----DSYCC 375 (943)
Q Consensus 313 Sv~KAa~LG~------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI-----DpL~e 375 (943)
+...+..++. ..+..+|.+ |+++|+++|+.+ +.+|+.+ ..+.+|.+ +++++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~~~v~~~-p~np~g~~~~~~~~~l~~ 208 (406)
T 4adb_A 141 RTLFTVSAGGQPAYSQDFAPLPADIRHAAYN-----DINSASALIDDS------TCAVIVE-PIQGEGGVVPASNAFLQG 208 (406)
T ss_dssp SSHHHHHHSSCGGGTGGGCSCCSSEEEECTT-----CHHHHHTTCSTT------EEEEEEC-SEETTTTSEECCHHHHHH
T ss_pred CcHHHhhccCCccccccCCCCCCCceEeCCC-----cHHHHHHHhcCC------eEEEEEe-CCcCCCCCccCCHHHHHH
Confidence 6666655543 245555543 689998888632 5677776 55666643 56889
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|.+ +|++||+ ++++|.+|+++
T Consensus 209 l~~--------------------l~~~~~~-------~li~De~~~~~ 229 (406)
T 4adb_A 209 LRE--------------------LCNRHNA-------LLIFDEVQTGV 229 (406)
T ss_dssp HHH--------------------HHHHTTC-------EEEEECTTTTT
T ss_pred HHH--------------------HHHHcCC-------EEEEeccccCC
Confidence 998 9999999 99999999865
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-10 Score=124.05 Aligned_cols=289 Identities=11% Similarity=-0.014 Sum_probs=167.0
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
.++.+++++++|. + ..+||+|||+||..|+.+++...... .|.. .++..|++...+|++
T Consensus 81 ~~l~~~la~~~g~-~-----------~v~~~~~gt~a~~~al~~~~~~~~~~-----~~~~----~~~~~vi~~~~~~~~ 139 (392)
T 3ruy_A 81 GPWYEKVAKLTNK-E-----------MVLPMNTGAEAVETAIKTARRWAYDV-----KKVE----ANRAEIIVCEDNFHG 139 (392)
T ss_dssp HHHHHHHHHHHTC-S-----------EEEEESSHHHHHHHHHHHHHHHHHHT-----SCCC----TTCCEEEEETTCCCC
T ss_pred HHHHHHHHHhcCC-C-----------EEEEeCcHHHHHHHHHHHHHHhhhhc-----cCCC----CCCcEEEEEcCCcCC
Confidence 3456788899883 2 57999999999999999876531110 1110 022245555666654
Q ss_pred HHHHH-HHCC------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHh
Q psy11047 314 VEKAG-LIGL------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCL 376 (943)
Q Consensus 314 v~KAa-~LG~------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eI 376 (943)
...++ .++. ..+..++.+ |+++|+++|+.+ +.+|+.+...+.+|.+-| +++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~~l~~i 208 (392)
T 3ruy_A 140 RTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAITPN------TAAFILEPIQGEAGINIPPAGFLKEA 208 (392)
T ss_dssp SSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHCCTT------EEEEEECSSBSTTTSBCCCTTHHHHH
T ss_pred CCHhhhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHhccC------eEEEEEeCccCCCCCccCCHHHHHHH
Confidence 43333 3322 124555543 799999988732 677888778888999988 9999
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhh
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLN 456 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~ 456 (943)
.+ +|++||+ ++++|.+|+++ ..
T Consensus 209 ~~--------------------l~~~~~~-------~li~De~~~~~-~~------------------------------ 230 (392)
T 3ruy_A 209 LE--------------------VCKKENV-------LFVADEIQTGL-GR------------------------------ 230 (392)
T ss_dssp HH--------------------HHHTTTC-------EEEEECTTTTT-TT------------------------------
T ss_pred HH--------------------HHHHcCC-------EEEEeechhCC-Cc------------------------------
Confidence 99 9999999 99999999755 21
Q ss_pred ccCcccccchhhhhcCCCCeeEEEEcCCCccCc---cCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHH
Q psy11047 457 SKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRV---KNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKL 533 (943)
Q Consensus 457 ~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~v---r~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALkl 533 (943)
.|.... ....++ ..|.++++ |++.- +-...+ ..+..+..-. ......+-....+.+
T Consensus 231 -~g~~~~----~~~~~~-~~d~~~~S--K~l~gG~~~~G~~~-----~~~~~~~~~~--------~~~~~~~~~~~~~~~ 289 (392)
T 3ruy_A 231 -TGKVFA----CDWDNV-TPDMYILG--KALGGGVFPISCAA-----ANRDILGVFE--------PGSHGSTFGGNPLAC 289 (392)
T ss_dssp -TSSSSG----GGGGTC-CCSEEEEC--GGGGTTTSCCEEEE-----ECHHHHTTCC--------TTSSCCSSTTCHHHH
T ss_pred -cccchh----hhccCC-CCCEEEEc--hhhhCChhhhEEEE-----ECHHHHhhhc--------cCCcCCCCCCCHHHH
Confidence 000011 111232 45778775 76542 221111 0111110000 000000001122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHH
Q psy11047 534 WFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL 613 (943)
Q Consensus 534 W~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~ 613 (943)
++....+-.....+..++ ..++++++.+.
T Consensus 290 ~a~~~~l~~~~~~~~~~~---------------------------------------------------~~~~~~~l~~~ 318 (392)
T 3ruy_A 290 AVSIAALEVLEEEKLTER---------------------------------------------------SLQLGEKLVGQ 318 (392)
T ss_dssp HHHHHHHHHHHHTTHHHH---------------------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHH---------------------------------------------------HHHHHHHHHHH
Confidence 222222211000111111 24567788888
Q ss_pred HhCC--CCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 614 VLGD--PRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 614 L~~~--p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
|++. +.+... ++..+++.|.+.+ ...++.++|.++|. ++.+. +..++|++++..+++++++++++.|+++
T Consensus 319 L~~~~~~~~~~~-~~~g~~~~~~~~~---~~~~l~~~l~~~gi-~v~~~---~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 390 (392)
T 3ruy_A 319 LKEIDNPMITEV-RGKGLFIGIELNE---PARPYCEQLKAAGL-LCKET---HENVIRIAPPLVISEEDLEWAFQKIKAV 390 (392)
T ss_dssp HTTCCCTTEEEE-EEETTEEEEEESS---CSHHHHHHHHTTTE-ECCCB---TTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCceEE-EeeeeEEEEEEcc---hHHHHHHHHHHCCc-EEecC---CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 8776 334332 3456788888765 24678888888875 45442 3579999988899999999999999876
Q ss_pred H
Q psy11047 692 A 692 (943)
Q Consensus 692 ~ 692 (943)
.
T Consensus 391 l 391 (392)
T 3ruy_A 391 L 391 (392)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.3e-11 Score=132.59 Aligned_cols=158 Identities=9% Similarity=0.001 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHhc-cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINC-LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284 (943)
Q Consensus 206 silgd~L~~alN~-n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~ 284 (943)
..+.+.+..++.. ....|.......+++..+.+|+.+.+|.+... ...++|+|||+|+..++.+..
T Consensus 73 ~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~--------~~v~~t~G~~~al~~~~~~l~----- 139 (447)
T 3b46_A 73 QFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKA--------ENVTVTTGANEGILSCLMGLL----- 139 (447)
T ss_dssp HHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCG--------GGEEEESHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh--------hhEEEeCCHHHHHHHHHHHHc-----
Confidence 3444555555543 12233333345788888999998888864321 268999999999988877531
Q ss_pred hhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC------------CCCcCHHHHHHHHHHhhccC
Q psy11047 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD------------KLSLRGDKLIEAIERDKKKH 352 (943)
Q Consensus 285 ~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~------------~grmD~daLe~aI~~d~~kG 352 (943)
.+| -.|++.+-.|.+...++...+.+++.++.+. ++.+|+++|+++|+.+
T Consensus 140 -----~~g---------d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---- 201 (447)
T 3b46_A 140 -----NAG---------DEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSK---- 201 (447)
T ss_dssp -----CTT---------CEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTT----
T ss_pred -----CCC---------CEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccC----
Confidence 122 2366667788888887755445788888754 4689999999988632
Q ss_pred CCcEEEEEecCCCccccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 353 LIPFFIFSGLALPAFLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 353 ~~P~~VVaTaGTT~tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+|+.+...+.+|.+ +++++|++ +|++||+ ++++|.+|+++
T Consensus 202 --~~~v~l~~p~nptG~~~~~~~l~~i~~--------------------l~~~~~~-------~li~De~~~~~ 246 (447)
T 3b46_A 202 --TKAVIINTPHNPIGKVFTREELTTLGN--------------------ICVKHNV-------VIISDEVYEHL 246 (447)
T ss_dssp --EEEEEEESSCTTTCCCCCHHHHHHHHH--------------------HHHHTTC-------EEEEECTTTTC
T ss_pred --CeEEEEeCCCCCCCcccCHHHHHHHHH--------------------HHHHcCc-------EEEEeccchhc
Confidence 5677777888889988 56888888 9999999 99999999876
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-10 Score=123.90 Aligned_cols=287 Identities=10% Similarity=-0.023 Sum_probs=167.5
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+.+.+++++|.+.+ ..++|+|||+++..++.+. + | + .|++..-+|.++
T Consensus 63 ~l~~~la~~~~~~~~----------~v~~~~g~~~al~~~~~~~-----~-------g--------d-~vl~~~p~y~~~ 111 (364)
T 1lc5_A 63 HLHQALARHHQVPAS----------WILAGNGETESIFTVASGL-----K-------P--------R-RAMIVTPGFAEY 111 (364)
T ss_dssp HHHHHHHHHHTSCGG----------GEEEESSHHHHHHHHHHHH-----C-------C--------S-EEEEEESCCTHH
T ss_pred HHHHHHHHHHCcCHH----------HEEECCCHHHHHHHHHHHc-----C-------C--------C-eEEEeCCCcHHH
Confidence 345566777787643 5899999999998777653 1 1 1 255667788888
Q ss_pred HHHHHHCCccEEEEecCCCCCcCH-HHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRG-DKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~-daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i 390 (943)
..++...+.+++.+|.+....++. +++.+.+.. .+.+|+.+...+.+|.+-| +++|.+
T Consensus 112 ~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~------------ 173 (364)
T 1lc5_A 112 GRALAQSGCEIRRWSLREADGWQLTDAILEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIAD------------ 173 (364)
T ss_dssp HHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHH------------
T ss_pred HHHHHHcCCeEEEEeCCcccccchhHHHHHhccC------CCCEEEEeCCCCCCCCCCCHHHHHHHHH------------
Confidence 888754445788898875223443 433333321 2455666677888999877 888888
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhh
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRI 470 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l 470 (943)
+|++||+ ++++|.+|+++ .+. +.-..+ .+
T Consensus 174 --------~~~~~~~-------~li~De~~~~~-~~~-------------------------------~~~~~~----~~ 202 (364)
T 1lc5_A 174 --------RCKSLNI-------NLILDEAFIDF-IPH-------------------------------ETGFIP----AL 202 (364)
T ss_dssp --------HHHHHTC-------EEEEECTTGGG-STT-------------------------------CCCSGG----GC
T ss_pred --------HhhhcCc-------EEEEECcChhh-ccC-------------------------------ccchhh----Hh
Confidence 9999999 99999999865 220 000011 01
Q ss_pred cCCCCeeEEEEcCCCccCccC---cchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHH
Q psy11047 471 QGLGRAQNFTIVPSSLLRVKN---SGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQK 547 (943)
Q Consensus 471 ~Gie~ADSItiDpHK~L~vr~---~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~ 547 (943)
+....|-+..++||+++... ...+ ..++..+..-.. -...|+ ...+..++....+... +
T Consensus 203 -~~~~~~i~~~s~sK~~~~~G~r~G~~~----~~~~~~~~~l~~----~~~~~~------~~~~~~~~~~~~l~~~---~ 264 (364)
T 1lc5_A 203 -KDNPHIWVLRSLTKFYAIPGLRLGYLV----NSDDAAMARMRR----QQMPWS------VNALAALAGEVALQDS---A 264 (364)
T ss_dssp -TTCTTEEEEEESTTTTTCTTTCCEEEE----CCCHHHHHHHHH----HSCTTC------SCHHHHHHHHHGGGCH---H
T ss_pred -ccCCCEEEEEECchhhcCCccceEEEE----ECCHHHHHHHHH----hCCCCC------CCHHHHHHHHHHHhCc---H
Confidence 11235788889999987321 1111 011111100000 000111 1233333333333211 1
Q ss_pred HHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCC
Q psy11047 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 627 (943)
Q Consensus 548 ~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~ 627 (943)
.+++..+ . ..++++++.+.|++.|++++. ++.
T Consensus 265 ~~~~~~~-----------------------~------------------------~~~~~~~l~~~L~~~~~~~~~-~~~ 296 (364)
T 1lc5_A 265 WQQATWH-----------------------W------------------------LREEGARFYQALCQLPLLTVY-PGR 296 (364)
T ss_dssp HHHHHHH-----------------------H------------------------HHHHHHHHHHHHHTSTTEEEC-CCS
T ss_pred HHHHHHH-----------------------H------------------------HHHHHHHHHHHHhcCCCCEEC-CCC
Confidence 2222110 0 234567788888888899876 466
Q ss_pred ccEEEEEecCCChHHHHHHHHHhccCcEEEeecc-c--CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS-L--RIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~-~--~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
.+.+.|++.+. ...+.+.|.++|. ++.+.. . .+..++|+++. +.++++++++.|+++.++
T Consensus 297 g~~~~~~~~~~---~~~l~~~l~~~gi-~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 297 ANYLLLRCERE---DIDLQRRLLTQRI-LIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp SSEEEEEESCT---TCCHHHHHHTTTE-ECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC--
T ss_pred CeEEEEECCCc---HHHHHHHHHHCCc-EEeeCcccCCCCCCEEEEEeC---CHHHHHHHHHHHHHHhhc
Confidence 77788887532 3467777777775 444422 2 23579999754 588999999999887554
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.7e-10 Score=124.92 Aligned_cols=125 Identities=9% Similarity=-0.032 Sum_probs=94.5
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
.|...++ .+++++++|.+ ..+++++||+|+..++.+.. .+| -.|+
T Consensus 58 ~~~~~~l----~~~la~~~g~~------------~~i~~~sG~~ai~~~~~~~~----------~~g---------d~vl 102 (389)
T 3acz_A 58 NPTVEQF----EEMVCSIEGAA------------GSAAFGSGMGAISSSTLAFL----------QKG---------DHLI 102 (389)
T ss_dssp CHHHHHH----HHHHHHHHTCS------------EEEEESSHHHHHHHHHTTTC----------CTT---------CEEE
T ss_pred ChHHHHH----HHHHHHHhCCC------------eEEEeCCHHHHHHHHHHHHh----------CCC---------CEEE
Confidence 4444444 45678888875 35788889999987765421 122 2477
Q ss_pred ecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 306 CSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 306 ~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
++..+|.+...++ ...+.+++.++. .|+++|+++|+++ +.+|+.+..++.+|.+.|+++|++
T Consensus 103 ~~~~~y~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~--- 168 (389)
T 3acz_A 103 AGDTLYGCTVSLFTHWLPRFGIEVDLIDT-----SDVEKVKAAWKPN------TKMVYLESPANPTCKVSDIKGIAV--- 168 (389)
T ss_dssp EESSCCHHHHHHHHHHHHHTTCEEEEECT-----TCHHHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHH---
T ss_pred EeCCCchHHHHHHHHHHHHcCCEEEEECC-----CCHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHH---
Confidence 7888999877764 233447788876 3789999888653 568888889999999999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.+|+.+
T Consensus 169 -----------------~~~~~~~-------~livD~~~~~~ 186 (389)
T 3acz_A 169 -----------------VCHERGA-------RLVVDATFTSP 186 (389)
T ss_dssp -----------------HHHHHTC-------EEEEECTTTCT
T ss_pred -----------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999866
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-10 Score=120.17 Aligned_cols=122 Identities=11% Similarity=-0.105 Sum_probs=95.5
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+.+.+++++|.+.+ ..++|+|+|+++..++.+. +| -.|++++-+|.+.
T Consensus 55 ~lr~~la~~~~~~~~----------~i~~t~G~~~~l~~~~~~~------------~g---------d~vl~~~p~~~~~ 103 (337)
T 3p1t_A 55 RVMRKLAEHFSCPED----------NLMLVRGIDECFDRISAEF------------SS---------MRFVTAWPGFDGY 103 (337)
T ss_dssp HHHHHHHHHHTSCGG----------GEEEESHHHHHHHHHHHHS------------TT---------SEEEEESSSCSHH
T ss_pred HHHHHHHHHhCcCHH----------HEEEeCCHHHHHHHHHHhc------------CC---------CeEEEeCCCcHHH
Confidence 455677888888654 6899999999987766531 12 1367788899998
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++...+.+++.++.++++.+|+++|+++. .+.+++.+...+.+|.+-|++++.+
T Consensus 104 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~--------~~~~v~i~~p~nptG~~~~~~~l~~---------------- 159 (337)
T 3p1t_A 104 RARIAVSGLRHFEIGLTDDLLLDPNDLAQVS--------RDDCVVLANPSNPTGQALSAGELDQ---------------- 159 (337)
T ss_dssp HHHHTTSCCEEEEECBCTTSSBCHHHHTTCC--------TTEEEEEESSCTTTCCCCCHHHHHH----------------
T ss_pred HHHHHHcCCEEEEecCCCCCCCCHHHHHhhc--------CCCEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 8887554458899999888999999988651 2567888888899999999999999
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+.+++ ++ +|.+|+.+
T Consensus 160 ----l~~~~~~-------~i-vDea~~~~ 176 (337)
T 3p1t_A 160 ----LRQRAGK-------LL-IDETYVDY 176 (337)
T ss_dssp ----HHHHCSE-------EE-EECTTGGG
T ss_pred ----HHHhCCc-------EE-EECCChhh
Confidence 9999987 55 49999854
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-11 Score=133.24 Aligned_cols=118 Identities=10% Similarity=-0.004 Sum_probs=86.7
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+.+|+++|.++ .+++++||+||..++. . + .+| -.|+++...|.++
T Consensus 59 ~lr~~la~~~g~~~------------~i~~~sGt~a~~~al~-~----~------~~g---------d~Vi~~~~~y~~~ 106 (393)
T 1n8p_A 59 NLERAVAALENAQY------------GLAFSSGSATTATILQ-S----L------PQG---------SHAVSIGDVYGGT 106 (393)
T ss_dssp HHHHHHHHHTTCSE------------EEEESCHHHHHHHHHH-T----S------CSS---------CEEEEESSCCHHH
T ss_pred HHHHHHHHHhCCCc------------EEEECChHHHHHHHHH-H----c------CCC---------CEEEEeCCCchHH
Confidence 34556788888752 4677777999987765 2 1 122 2366677788866
Q ss_pred HHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccc
Q psy11047 315 EKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 315 ~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i 390 (943)
.... ...+.+++.++.+ | ++|+++|+.+ +.+|+.+..++.+|.+-|+++|++
T Consensus 107 ~~~~~~~~~~~G~~v~~v~~~-----d-~~l~~~i~~~------t~lv~~~~~~nptG~~~~l~~i~~------------ 162 (393)
T 1n8p_A 107 HRYFTKVANAHGVETSFTNDL-----L-NDLPQLIKEN------TKLVWIETPTNPTLKVTDIQKVAD------------ 162 (393)
T ss_dssp HHHHHHTSTTTCSCCEEESSH-----H-HHHHHHSCSS------EEEEEECSSCTTTCCCCCHHHHHH------------
T ss_pred HHHHHHHHHHcCcEEEEeCCC-----h-HHHHHhcccC------ceEEEEECCCCCcceecCHHHHHH------------
Confidence 5543 2223477888875 6 8888877642 678888888899999999999999
Q ss_pred cccCchHHHHHHc----CCCCCccchhhhHHhhhcCC
Q psy11047 391 KLQTNFPNFILSY----FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 391 ~L~RrfR~iar~~----Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++| |+ ++|+|++|+.+
T Consensus 163 --------la~~~~~~~~~-------~livD~a~~~~ 184 (393)
T 1n8p_A 163 --------LIKKHAAGQDV-------ILVVDNTFLSP 184 (393)
T ss_dssp --------HHHHHTTTTTC-------EEEEECTTTHH
T ss_pred --------HHHHhCCCCCC-------EEEEeCCcccc
Confidence 99999 99 99999999765
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-10 Score=129.70 Aligned_cols=126 Identities=11% Similarity=0.038 Sum_probs=94.8
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|. .+|+++|.+ ..++++|||+||..++.+. + .+| -.|
T Consensus 80 ~~p~~~~le~----~lA~l~g~~------------~~i~~ssGt~Ai~~al~~l----~------~~G---------d~V 124 (415)
T 2fq6_A 80 GTLTHFSLQQ----AMCELEGGA------------GCVLFPCGAAAVANSILAF----I------EQG---------DHV 124 (415)
T ss_dssp CCHHHHHHHH----HHHHHHTCS------------EEEEESSHHHHHHHHHHTT----C------CTT---------CEE
T ss_pred CCchHHHHHH----HHHHHhCCC------------eEEEeCCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 5577777776 457888864 2578899999998876631 0 122 247
Q ss_pred EecCCCchHHHHHHH--H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAGL--I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa~--L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+....+. + .+..+..++.+ |+++|+++|+++ +.+|+....++.+|.+-|+++|++
T Consensus 125 i~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~-----d~~~le~ai~~~------tklV~~e~~~NptG~v~dl~~I~~-- 191 (415)
T 2fq6_A 125 LMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQPN------TKIVFLESPGSITMEVHDVPAIVA-- 191 (415)
T ss_dssp EEETTSCHHHHHHHHHTGGGGTCEEEEECTT-----CGGGGGGGCCTT------EEEEEEESSCTTTCCCCCHHHHHH--
T ss_pred EEeCCCchHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhhccC------CcEEEEECCCCCCCEeecHHHHHH--
Confidence 778889998876652 2 23467777764 788888888653 667888888889999999999999
Q ss_pred cccccccccccccCchHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++ +|+ ++|+|++|+..
T Consensus 192 ------------------la~~~~~g~-------~livD~a~a~~ 211 (415)
T 2fq6_A 192 ------------------AVRSVVPDA-------IIMIDNTWAAG 211 (415)
T ss_dssp ------------------HHHHHCTTC-------EEEEECTTTTT
T ss_pred ------------------HHHhhcCCC-------EEEEECCCccc
Confidence 9999 999 99999999754
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-10 Score=127.60 Aligned_cols=125 Identities=10% Similarity=0.014 Sum_probs=94.7
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++| ++++++.|.+ ..++++||++|+..++.+.. .+| -.|
T Consensus 79 ~~p~~~~l~----~~la~~~g~~------------~~~~~~sG~~Ai~~al~~l~----------~~G---------d~V 123 (414)
T 3ndn_A 79 GNPTVSVFE----ERLRLIEGAP------------AAFATASGMAAVFTSLGALL----------GAG---------DRL 123 (414)
T ss_dssp CCHHHHHHH----HHHHHHHTCS------------EEEEESSHHHHHHHHHHTTC----------CTT---------CEE
T ss_pred CChHHHHHH----HHHHHHHCCC------------cEEEECCHHHHHHHHHHHHh----------CCC---------CEE
Confidence 345555555 5678888863 46899999999877765421 122 246
Q ss_pred EecCCCchHHHHHHH----HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAGL----IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa~----LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+...++. ..+..++.++.+ |+++|+++|+.+ +.+|+....++.+|.+.|+++|++
T Consensus 124 i~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~ai~~~------t~~v~le~p~NptG~~~~l~~i~~-- 190 (414)
T 3ndn_A 124 VAARSLFGSCFVVCSEILPRWGVQTVFVDGD-----DLSQWERALSVP------TQAVFFETPSNPMQSLVDIAAVTE-- 190 (414)
T ss_dssp EEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----CHHHHHHHTSSC------CSEEEEESSCTTTCCCCCHHHHHH--
T ss_pred EEcCCccchHHHHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCccccHHHHHH--
Confidence 778889988776652 134478888875 799999988653 567777888999999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
+|++||+ ++++|.+|+.
T Consensus 191 ------------------la~~~g~-------~livDe~~~~ 207 (414)
T 3ndn_A 191 ------------------LAHAAGA-------KVVLDNVFAT 207 (414)
T ss_dssp ------------------HHHHTTC-------EEEEECTTTH
T ss_pred ------------------HHHHcCC-------EEEEECCCcc
Confidence 9999999 9999999974
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-10 Score=124.15 Aligned_cols=119 Identities=5% Similarity=-0.150 Sum_probs=90.1
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE 315 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~ 315 (943)
+.+.+++++|.++ .+++++||+|+..++.+.. .+| ..|+++..+|.+..
T Consensus 3 l~~~la~~~g~~~------------~i~~~sG~~a~~~~~~~~~----------~~g---------~~v~~~~~~~~~~~ 51 (331)
T 1pff_A 3 LEGKIAKLEHAEA------------CAATASGMGAIAASVWTFL----------KAG---------DHLISDDCLYGCTH 51 (331)
T ss_dssp HHHHHHHHHTCSE------------EEEESSHHHHHHHHHHHHC----------CTT---------CEEEEESCCCHHHH
T ss_pred HHHHHHHHhCCCe------------EEEeCChHHHHHHHHHHhc----------CCC---------CEEEEcCCCcchHH
Confidence 4567788998762 4677777999988776531 122 24777888999987
Q ss_pred HHHH----HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 316 KAGL----IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 316 KAa~----LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
.++. ..+..++.++. +|+++|+++|+++ +.+|+.+..++.+|.+.|+++|.+
T Consensus 52 ~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~------------- 107 (331)
T 1pff_A 52 ALFEHQLRKFGVEVDFIDM-----AVPGNIEKHLKPN------TRIVYFETPANPTLKVIDIEDAVK------------- 107 (331)
T ss_dssp HHHHTHHHHTTCEEEEECT-----TSTTHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHH-------------
T ss_pred HHHHHHHHhcCCEEEEeCC-----CCHHHHHHhhcCC------CeEEEEECCCCCcCcccCHHHHHH-------------
Confidence 7652 23346777765 4788888887643 668888889999999999999999
Q ss_pred ccCchHHHHHH-cCCCCCccchhhhHHhhhcCC
Q psy11047 392 LQTNFPNFILS-YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 392 L~RrfR~iar~-~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++ +|+ ++++|++|+.+
T Consensus 108 -------~~~~~~~~-------~li~D~a~~~~ 126 (331)
T 1pff_A 108 -------QARKQKDI-------LVIVDNTFASP 126 (331)
T ss_dssp -------HHTTSSSC-------EEEEECTTTHH
T ss_pred -------HHhhhcCC-------EEEEECCCccc
Confidence 9999 999 99999999754
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-10 Score=125.84 Aligned_cols=132 Identities=11% Similarity=0.035 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
.+...+.+++++++|. + ..+||+|||+|+..++.+++..... . .+| ++-+++.+..-
T Consensus 82 ~~~~~l~~~la~~~g~-~-----------~v~~~~gg~~a~~~al~~~~~~~~~--~--~~~-------~~~vi~~~~~y 138 (397)
T 2ord_A 82 RPQMELAELLSKNTFG-G-----------KVFFANTGTEANEAAIKIARKYGKK--K--SEK-------KYRILSAHNSF 138 (397)
T ss_dssp HHHHHHHHHHHHTTTS-C-----------EEEEESSHHHHHHHHHHHHHHHHHH--H--CTT-------CCEEEEEBTCC
T ss_pred HHHHHHHHHHHHhcCC-C-----------eEEEeCCHHHHHHHHHHHHHHHhhc--C--CCC-------CceEEEEcCCc
Confidence 3445566778888873 2 5799999999999998877642110 0 011 22355566667
Q ss_pred chHHHHHHHH-CCc-----------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccc----cccHH
Q psy11047 311 HSSVEKAGLI-GLV-----------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLV----VDSYC 374 (943)
Q Consensus 311 HySv~KAa~L-G~~-----------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGa----IDpL~ 374 (943)
|.+...++.+ |.. .+..++.+ |+++|+++|+.+ +.+|+.+...+.+|. .++++
T Consensus 139 h~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~~l~ 207 (397)
T 2ord_A 139 HGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMSED------VCAVFLEPIQGESGIVPATKEFLE 207 (397)
T ss_dssp CCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCCTT------EEEEEECSEECTTTCEECCHHHHH
T ss_pred CCCchhhhhccCChhhccccCCCCCCeeEecCC-----CHHHHHHHhhcC------eEEEEEecccCCCCcccCCHHHHH
Confidence 7776666643 432 26777763 799999988642 678888878888898 37799
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|.+ +|++||+ ++++|.+|+++
T Consensus 208 ~l~~--------------------l~~~~~~-------~li~De~~~~~ 229 (397)
T 2ord_A 208 EARK--------------------LCDEYDA-------LLVFDEVQCGM 229 (397)
T ss_dssp HHHH--------------------HHHHHTC-------EEEEECTTTTT
T ss_pred HHHH--------------------HHHHcCC-------EEEEEecccCC
Confidence 9999 9999999 99999999865
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.2e-10 Score=123.03 Aligned_cols=322 Identities=7% Similarity=-0.113 Sum_probs=180.8
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHH--HHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTL--ICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL--~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
..+.++++++.+.+ ..++|+|||+++. .++.+... ..+|-...-....-.|++.+-+|..
T Consensus 75 lr~~ia~~~~~~~~----------~i~~t~G~~~al~~~~~~~~l~~--------~~~g~~~~~~~~gd~Vlv~~p~y~~ 136 (423)
T 3ez1_A 75 ARALFAGYLDVKAE----------NVLVWNNSSLELQGLVLTFALLH--------GVRGSTGPWLSQTPKMIVTVPGYDR 136 (423)
T ss_dssp HHHHHHHHTTSCGG----------GEEECSSCHHHHHHHHHHHHHHT--------CCTTCSSCGGGGCCEEEEEESCCHH
T ss_pred HHHHHHHHhCCChh----------hEEEeCCcHHHHHHHHHHHHHhc--------cCCCccccccCCCCEEEEcCCCcHH
Confidence 44456677777654 6899999999986 55443210 0011000000001346777888988
Q ss_pred HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEe-cCCCcccccccHH---Hhhhhcccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSG-LALPAFLVVDSYC---CLGTAMIVKGLGFYK 389 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaT-aGTT~tGaIDpL~---eIa~~~~~~d~~~~~ 389 (943)
...++..-+.+++.+|.+++| +|+++|+++|+... .+.+|+++ ...+.+|.+-|.+ +|++
T Consensus 137 ~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~~----~~~~v~~~~~~~NPtG~~~~~~~l~~l~~----------- 200 (423)
T 3ez1_A 137 HFLLLQTLGFELLTVDMQSDG-PDVDAVERLAGTDP----SVKGILFVPTYSNPGGETISLEKARRLAG----------- 200 (423)
T ss_dssp HHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHHSCT----TEEEEEECSSSCTTTCCCCCHHHHHHHHT-----------
T ss_pred HHHHHHHcCCEEEeccCCCCC-CCHHHHHHHHhhCC----CceEEEECCCCCCCCCcCCCHHHHHHHHH-----------
Confidence 888775333478889988776 99999999996211 25566544 5678899987766 6776
Q ss_pred ccccCchHHHH-HHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhh
Q psy11047 390 MKLQTNFPNFI-LSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL 468 (943)
Q Consensus 390 i~L~RrfR~ia-r~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~ 468 (943)
+| ++||+ ++++|.+|+.. .|. . .+.........
T Consensus 201 ---------~a~~~~~~-------~li~De~y~~~-~~~--~---------------------------~~~~~~~~~~~ 234 (423)
T 3ez1_A 201 ---------LQAAAPDF-------TIFADDAYRVH-HLV--E---------------------------EDRAEPVNFVV 234 (423)
T ss_dssp ---------CCCSSTTC-------EEEEECTTSSC-BCC--S---------------------------SSCCCCCCHHH
T ss_pred ---------HHHhccCC-------EEEEECCcchh-hcC--C---------------------------CCCCCCcchhh
Confidence 88 89999 99999999853 220 0 00000001111
Q ss_pred hh--cCCCCeeEEEEcCCCccC--ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH--
Q psy11047 469 RI--QGLGRAQNFTIVPSSLLR--VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI-- 542 (943)
Q Consensus 469 ~l--~Gie~ADSItiDpHK~L~--vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~-- 542 (943)
.. .+....+-+..++||+++ .|-...+ ..+..+.. +.......+-....+..++....+..
T Consensus 235 ~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~-----~~~~~~~~--------~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 301 (423)
T 3ez1_A 235 LARDAGYPDRAFVFASTSKITFAGAGLGFVA-----SSEDNIRW--------LSKYLGAQSIGPNKVEQARHVKFLTEYP 301 (423)
T ss_dssp HHHHHTCTTSEEEEEESTTTSCSSSSCEEEE-----ECHHHHHH--------HHHHHHHSCSCCCHHHHHHHHHHHHHST
T ss_pred hhhccCCCCeEEEEeCchhhccCCcceEEEE-----eCHHHHHH--------HHHHHhhhccCCCHHHHHHHHHHHHhcc
Confidence 00 112334677788999744 2221110 00000000 00000000011223334444444443
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCC-CeE
Q psy11047 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDP-RFE 621 (943)
Q Consensus 543 ~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p-~~e 621 (943)
..+.+++++..+ .++++ ...+.+.+.+.+...+ .++
T Consensus 302 ~~~~~~~~~~~~-------------------~~~~~------------------------~~~l~~~l~~~l~~~~~~~~ 338 (423)
T 3ez1_A 302 GGLEGLMRDHAA-------------------IIAPK------------------------FRAVDEVLRAELGEGGEYAT 338 (423)
T ss_dssp THHHHHHHHHHH-------------------HHHHH------------------------HHHHHHHHHHHHTTTTSSEE
T ss_pred chHHHHHHHHHH-------------------HHHHH------------------------HHHHHHHHHHhcCcCCCceE
Confidence 344555554211 00000 2334556666666665 577
Q ss_pred EecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEee-cc-c-----CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 622 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP-AS-L-----RIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 622 Il~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~-t~-~-----~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+..+...+.+.+++.+.+ .+.+.+.+.++|. ++.+ .. . .+..++|+++... ++++|+++++.|.++..+
T Consensus 339 ~~~p~~g~~~~~~~~~~~--~~~~~~~l~~~gv-~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~ 414 (423)
T 3ez1_A 339 WTLPKGGYFISLDTAEPV--ADRVVKLAEAAGV-SLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRL 414 (423)
T ss_dssp ECCCSBSSCEEEEESSSC--HHHHHHHHHHTTE-ECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHH
T ss_pred EeCCCccEEEEEECCCCc--HHHHHHHHHHCCc-EEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence 776666777888886542 5677788888875 4544 11 1 2467999977555 899999999999988776
Q ss_pred HHH
Q psy11047 695 ILA 697 (943)
Q Consensus 695 ll~ 697 (943)
+..
T Consensus 415 ~~~ 417 (423)
T 3ez1_A 415 ATE 417 (423)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-09 Score=120.03 Aligned_cols=132 Identities=11% Similarity=-0.001 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
....++.+|+++++|. + ..+||+|||+||..|+.+++..... +| ..++-+++.+..-
T Consensus 78 ~~~~~l~~~la~~~~~-~-----------~v~~~~gg~ea~~~al~~~~~~~~~------~g-----~~~~~vi~~~~~y 134 (395)
T 3nx3_A 78 ENIAAAAKNLAKASAL-E-----------RVFFTNSGTESIEGAMKTARKYAFN------KG-----VKGGQFIAFKHSF 134 (395)
T ss_dssp HHHHHHHHHHHHHHTC-S-----------EEEEESSHHHHHHHHHHHHHHHHHH------TT-----CTTCEEEEETTCC
T ss_pred HHHHHHHHHHHHhcCC-C-----------eEEEeCCHHHHHHHHHHHHHHHhhc------cC-----CCCCEEEEEcCCc
Confidence 3445566788888873 2 5799999999999999988754321 11 0123455555555
Q ss_pred chHHHHHHHHCC------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HH
Q psy11047 311 HSSVEKAGLIGL------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YC 374 (943)
Q Consensus 311 HySv~KAa~LG~------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~ 374 (943)
|-+..-+..++. ..+..++.+ |+++|+++|+.+ +.+|+.....+++|.+-| ++
T Consensus 135 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~~~v~~~~~~~~~G~~~~~~~~l~ 203 (395)
T 3nx3_A 135 HGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVNEK------TCAIILESVQGEGGINPANKDFYK 203 (395)
T ss_dssp CCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCCTT------EEEEEEESEECTTSCEECCHHHHH
T ss_pred CCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhccCC------eEEEEEeCccCCCCcccCCHHHHH
Confidence 654443332221 245666653 689998888633 456666665666788766 89
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++ +|++||+ ++|+|.+|.++
T Consensus 204 ~l~~--------------------l~~~~~~-------~li~Dev~~~~ 225 (395)
T 3nx3_A 204 ALRK--------------------LCDEKDI-------LLIADEIQCGM 225 (395)
T ss_dssp HHHH--------------------HHHHHTC-------EEEEECTTTTT
T ss_pred HHHH--------------------HHHHcCC-------EEEEEecccCC
Confidence 9999 9999999 99999999865
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-09 Score=120.38 Aligned_cols=140 Identities=6% Similarity=-0.220 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
..+..++.++++++++.... ...+||+|||+||..|+.++|... + ++-+|++...
T Consensus 85 ~~~~~~l~~~la~~~~~~~~---------~~v~~~~ggsea~~~al~~~~~~~---------~-------~~~vi~~~~~ 139 (439)
T 3dxv_A 85 NAPAVTLAERLLASFPGEGT---------HKIWFGHSGSDANEAAYRAIVKAT---------G-------RSGVIAFAGA 139 (439)
T ss_dssp EHHHHHHHHHHHHTTTCTTT---------EEEEEESSHHHHHHHHHHHHHHHH---------S-------CCEEEEETTC
T ss_pred CHHHHHHHHHHHHhCCCCCC---------CEEEEeCCHHHHHHHHHHHHHHHh---------C-------CCEEEEECCC
Confidence 34556677889998854321 158999999999999999887421 0 2345666777
Q ss_pred CchHHHHHHHHCCcc--------------EEEEecCCCCCc-----CHHHHHHHHHHhhccCCCcEEEEEecCCCccccc
Q psy11047 310 AHSSVEKAGLIGLVN--------------MRYIESDDKLSL-----RGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 310 aHySv~KAa~LG~~~--------------v~~Vp~D~~grm-----D~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI 370 (943)
-|.+...++.++... +..+|.+..+.- |+++|+++|+.. ....+.+|+..-..+++|.+
T Consensus 140 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~ 217 (439)
T 3dxv_A 140 YHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAV--PAGSIGAAFIEPIQSDGGLI 217 (439)
T ss_dssp CCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTS--CTTCEEEEEECSSBSTTTSB
T ss_pred CCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhc--CCCCEEEEEEccccCCCCCc
Confidence 777666665443211 234444433333 799999999521 11235566666666667888
Q ss_pred cc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 371 DS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 371 Dp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-| +++|.+ +|++||+ ++++|.+|+++
T Consensus 218 ~~~~~~l~~l~~--------------------l~~~~~~-------~li~DE~~~g~ 247 (439)
T 3dxv_A 218 VPPDGFLRKFAD--------------------ICRAHGI-------LVVCDEVKVGL 247 (439)
T ss_dssp CCCTTHHHHHHH--------------------HHHHTTC-------EEEEECTTTCT
T ss_pred cCCHHHHHHHHH--------------------HHHHcCC-------EEEEeccccCC
Confidence 77 999999 9999999 99999999865
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.4e-10 Score=124.65 Aligned_cols=313 Identities=9% Similarity=-0.058 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHHh-CCCccccccCcCCCCc---EEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 229 CTELEIITMNWLGKMI-GLPEEFLHTKVDSPGG---GVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 229 ateLE~~Vi~wLa~Ll-G~p~~fl~~~~~~~~~---GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..+++..+.+|+.+.. +.+.+ . .++|+|||+|+..++.+.. .+| -.|
T Consensus 90 ~~~lr~~ia~~~~~~~~~~~~~----------~~~~i~~t~g~~~al~~~~~~l~----------~~g---------d~V 140 (430)
T 2x5f_A 90 IEELRDLWQQKMLRDNPELSID----------NMSRPIVTNALTHGLSLVGDLFV----------NQD---------DTI 140 (430)
T ss_dssp CHHHHHHHHHHHHHHCTTCCGG----------GBCCCEEESHHHHHHHHHHHHHC----------CTT---------CEE
T ss_pred CHHHHHHHHHHHhccCcccCCC----------ccceEEEcCCchHHHHHHHHHHh----------CCC---------CEE
Confidence 5667777777766552 44332 4 7999999999988776531 122 246
Q ss_pred EecCCCchHHHHHHHH-CCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhh
Q psy11047 305 YCSDQAHSSVEKAGLI-GLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTA 379 (943)
Q Consensus 305 ~~S~~aHySv~KAa~L-G~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~ 379 (943)
++.+-+|.+...++.. -+.+++.++.+. ++.+|+++|+++|+.. +..+.+++.+...+.+|.+-| +++|.+
T Consensus 141 l~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~- 216 (430)
T 2x5f_A 141 LLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIVE- 216 (430)
T ss_dssp EEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHHH-
T ss_pred EEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHH-
Confidence 6778889888887754 445788888865 4689999999999863 112667777777888999877 778888
Q ss_pred ccccccccccccccCchHHHHHH-----cCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHH
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILS-----YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKR 454 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~-----~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~ 454 (943)
+|++ ||+ ++++|.+|+++ .+.
T Consensus 217 -------------------~~~~~~~~~~~~-------~li~De~~~~~-~~~--------------------------- 242 (430)
T 2x5f_A 217 -------------------AIKALANKGTKV-------IAVVDDAYYGL-FYE--------------------------- 242 (430)
T ss_dssp -------------------HHHHHHHTTCEE-------EEEEECTTTTC-BCS---------------------------
T ss_pred -------------------HHHhhhhccCCE-------EEEEehhcccc-cCC---------------------------
Confidence 9999 999 99999999876 320
Q ss_pred hhccCcccccchhhhhcCCCCe---eEEEEcCCCccCccC---cchhhhhcccCccccccCCCCcccccCccccCCCCCc
Q psy11047 455 LNSKGRLHCVPASLRIQGLGRA---QNFTIVPSSLLRVKN---SGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF 528 (943)
Q Consensus 455 l~~~G~~~~p~~r~~l~Gie~A---DSItiDpHK~L~vr~---~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf 528 (943)
|. ........+.+.... +-+..++||+++... ...+. ...++..+..-.. . ....... ..-..
T Consensus 243 ----~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~--~~~~~~~~~~l~~-~-~~~~~~~--~~~~~ 311 (430)
T 2x5f_A 243 ----DV-YTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTF--GTSDQTTKEVLEA-K-VKGLIRS--NISSG 311 (430)
T ss_dssp ----SS-CCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEE--BCCCHHHHHHHHH-H-HHHHHHT--TTSSC
T ss_pred ----cc-cchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEE--ecCCHHHHHHHHH-H-Hhhhhhc--ccCCC
Confidence 00 001111012222222 455778999986221 11110 0000111000000 0 0000000 00011
Q ss_pred chHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHH
Q psy11047 529 RALKLWFVIRNFG-IKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 607 (943)
Q Consensus 529 rALklW~tLr~~G-~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA 607 (943)
..+..++....+. ...+.+.+++..+ . ..+..
T Consensus 312 ~~~~~~a~~~~l~~~~~~~~~~~~~~~-----------------------~------------------------~~~~~ 344 (430)
T 2x5f_A 312 PLPTQSAVKHVLKNNKQFDKEIEQNIQ-----------------------T------------------------LKERY 344 (430)
T ss_dssp CHHHHHHHHHHHHSCHHHHHHHHHHHH-----------------------H------------------------HHHHH
T ss_pred ChHHHHHHHHHHccChHHHHHHHHHHH-----------------------H------------------------HHHHH
Confidence 2333343444433 2233333332210 0 23456
Q ss_pred HHHHHHHh----CCCCeEEecCCCccE-EEEEecCCChHHHHHHHHHhc-cCcEEEeecccCCCcEEEEeecCCCCHHHH
Q psy11047 608 QKFEALVL----GDPRFEIPAARHLGM-VVIRLLGENILTEKLLKRLNS-KGRLHCVPASLRIQGLGRAQNFTRTTNDDI 681 (943)
Q Consensus 608 ~~l~~~L~----~~p~~eIl~~~~l~i-V~Fr~~g~n~l~~~Ll~~L~~-~G~~~~s~t~~~g~~~lR~v~~~~tt~edI 681 (943)
+++.+.|+ +. ++++.. +..++ +.+++.+.+ ...+.++|.+ +|. ++.+. +.+++|++++. +++++|
T Consensus 345 ~~l~~~L~~~~~~~-g~~~~~-~~~g~~~~~~~~~~~--~~~~~~~l~~~~gi-~v~~g---~~~~iRis~~~-~~~e~i 415 (430)
T 2x5f_A 345 EVTKEVVYADQYHS-HWQAYD-FNSGYFMAIKVHDVD--PEALRKHLIDKYSI-GVIAL---NATDIRIAFSC-VEKDDI 415 (430)
T ss_dssp HHHHHHHTCGGGTT-TEEECC-CCBSSEEEEEESSSC--HHHHHHHHHHHHCE-ECEEC---SSSEEEEEGGG-SCGGGH
T ss_pred HHHHHHHHhhCCCC-CceeeC-CCceEEEEeCCCCCC--HHHHHHHHHHhCCE-EEecC---CCCeEEEEEec-CCHHHH
Confidence 67777777 43 677764 44554 677776332 4678888887 775 45542 46789997664 588999
Q ss_pred HHHHHHHHHHHHHH
Q psy11047 682 TRDWNEIRNTATEI 695 (943)
Q Consensus 682 d~ll~~I~~~~~~l 695 (943)
+++++.|+++.+++
T Consensus 416 ~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 416 PHVFDSIAKAIDDL 429 (430)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998876543
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-09 Score=121.84 Aligned_cols=320 Identities=7% Similarity=-0.092 Sum_probs=178.9
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHH--HHHHHHHHHHHHhhcccCCCchh-hhcCCceEEEecCCCch
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTL--ICLLAGRTEAIRKYQQSHPELEH-AEINSRLVAYCSDQAHS 312 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL--~AL~aAR~~~l~~~~~~~pGl~~-~~i~~~~vV~~S~~aHy 312 (943)
.++.++++++.+.+ ..++|+|+|+++. .++.+... ..||-.. ....+.-.|++.+-+|.
T Consensus 83 lr~~ia~~~~~~~~----------~i~~t~G~~~al~~~~~~~~l~~--------~~~g~~~~~~~~~gd~V~v~~p~y~ 144 (427)
T 3ppl_A 83 IRQIWADLLGVPVE----------QVLAGDASSLNIMFDVISWSYIF--------GNNDSVQPWSKEETVKWICPVPGYD 144 (427)
T ss_dssp HHHHHHHHHTSCGG----------GEEECSSCHHHHHHHHHHHHHHH--------CCTTCSSCGGGSSCCEEEEEESCCH
T ss_pred HHHHHHHHhCCCcc----------eEEEeCCcHHHHHHHHHHHHHhc--------cCCcccccccCCCCCEEEEcCCCcH
Confidence 44455666677654 6899999999984 44333211 0010000 00000234677788999
Q ss_pred HHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEe-cCCCcccccccHH---Hhhhhccccccccc
Q psy11047 313 SVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSG-LALPAFLVVDSYC---CLGTAMIVKGLGFY 388 (943)
Q Consensus 313 Sv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaT-aGTT~tGaIDpL~---eIa~~~~~~d~~~~ 388 (943)
+...++..-+.+++.+|++++| +|+++|+++|+.. .+.+|+++ ...+.+|.+-|.+ +|.+
T Consensus 145 ~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~-----~~~~v~~~p~~~NPtG~~~~~~~~~~l~~---------- 208 (427)
T 3ppl_A 145 RHFSITERFGFEMISVPMNEDG-PDMDAVEELVKNP-----QVKGMWVVPVFSNPTGFTVTEDVAKRLSA---------- 208 (427)
T ss_dssp HHHHHHHHTTCEEEEEEEETTE-ECHHHHHHHTTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHH----------
T ss_pred HHHHHHHHcCCEEEEeCCCCCC-CCHHHHHHHHhcC-----CCeEEEECCCCCCCCCccCCHHHHHHHHH----------
Confidence 8888886544588999998777 9999999998421 25566555 6788899997766 6666
Q ss_pred cccccCchHHHH-HHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchh
Q psy11047 389 KMKLQTNFPNFI-LSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467 (943)
Q Consensus 389 ~i~L~RrfR~ia-r~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r 467 (943)
+| ++||+ |+++|.+|+.. .|. . .+.... ...
T Consensus 209 ----------~a~~~~~~-------~ii~De~y~~~-~~~--~---------------------------~~~~~~-~~~ 240 (427)
T 3ppl_A 209 ----------METAAPDF-------RVVWDNAYAVH-TLT--D---------------------------EFPEVI-DIV 240 (427)
T ss_dssp ----------CCCSSTTC-------EEEEECTTTTC-BSS--S---------------------------CCCCCC-CHH
T ss_pred ----------HHhhcCCC-------EEEEECCCccc-ccC--C---------------------------CCCCcc-chh
Confidence 88 89999 99999999875 320 0 000000 111
Q ss_pred hhh--cCCCCeeEEEEcCCCccC--ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH-
Q psy11047 468 LRI--QGLGRAQNFTIVPSSLLR--VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI- 542 (943)
Q Consensus 468 ~~l--~Gie~ADSItiDpHK~L~--vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~- 542 (943)
... .+....+-+..++||+++ +|-...+ ..+..+.. +.......+-....+..++....+..
T Consensus 241 ~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~-----~~~~l~~~--------~~~~~~~~~~~~~~~~q~~~~~~l~~~ 307 (427)
T 3ppl_A 241 GLGEAAGNPNRFWAFTSTSKITLAGAGVSFFL-----TSAENRKW--------YTGHAGIRGIGPNKVNQLAHARYFGDA 307 (427)
T ss_dssp HHHHHTTCTTSEEEEEESTTTSCTTSSCEEEE-----CCHHHHHH--------HHHHHHHHCSCCCHHHHHHHHHHHCSH
T ss_pred hhhhccCCCCcEEEEechhhccCcCccEEEEE-----cCHHHHHH--------HHHHhhcccCCCCHHHHHHHHHHHhCh
Confidence 110 122334677788999854 2211110 00000000 00000000001123333333333332
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEE
Q psy11047 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI 622 (943)
Q Consensus 543 ~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eI 622 (943)
..+.+++++..+ .++++ ...+.+.+.+.+...+++++
T Consensus 308 ~~~~~~~~~~~~-------------------~~~~~------------------------~~~l~~~L~~~l~~~~~~~~ 344 (427)
T 3ppl_A 308 EGVRAVMRKHAA-------------------SLAPK------------------------FNKVLEILDSRLAEYGVAQW 344 (427)
T ss_dssp HHHHHHHHHHHH-------------------HHHHH------------------------HHHHHHHHHHHHGGGTCCEE
T ss_pred hhHHHHHHHHHH-------------------HHHHH------------------------HHHHHHHHHHhcCCCCceEE
Confidence 234445544211 00000 12344555555555556777
Q ss_pred ecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEee-cc-c-----CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 623 PAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP-AS-L-----RIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 623 l~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~-t~-~-----~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
..+...+.+.+++.+.+ ...+.+.|.++|. ++.+ .. . .+..++|+++... ++++|+++++.|.++..++
T Consensus 345 ~~p~~g~~~~~~~~~~~--~~~~~~~l~~~gv-~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 345 TVPAGGYFISLDVVPGT--ASRVAELAKEAGI-ALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp CCCSBSSCEEEECSTTC--HHHHHHHHHHTTE-ECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred eCCCccEEEEEECCcch--HHHHHHHHHHCCC-EEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHH
Confidence 66666777788886542 5678888888875 4544 11 1 2467999976544 8999999999999887765
Q ss_pred HH
Q psy11047 696 LA 697 (943)
Q Consensus 696 l~ 697 (943)
..
T Consensus 421 ~~ 422 (427)
T 3ppl_A 421 AA 422 (427)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-09 Score=118.05 Aligned_cols=146 Identities=12% Similarity=-0.081 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
.++-..+.+|+++..|.+..... ...+....++|+|||+++..++.+.. .+| -.|++.+-
T Consensus 81 ~~lr~~ia~~l~~~~g~~~~~~~-~~~~~~~i~~t~G~~~al~~~~~~l~----------~~g---------d~Vlv~~p 140 (425)
T 2r2n_A 81 PELLSWLKQLQIKLHNPPTIHYP-PSQGQMDLCVTSGSQQGLCKVFEMII----------NPG---------DNVLLDEP 140 (425)
T ss_dssp HHHHHHHHHHHHHHHCCTTTTSC-GGGTCEEEEEESSHHHHHHHHHHHHC----------CTT---------CEEEEESS
T ss_pred HHHHHHHHHHHHHhcCCCCcccc-ccCCcCcEEEeCcHHHHHHHHHHHhC----------CCC---------CEEEEeCC
Confidence 46677788888888888641000 00000258999999999987766531 122 24667788
Q ss_pred CchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhc------cCCCcEEEEE-ecCCCcccccccHH---Hhhhh
Q psy11047 310 AHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKK------KHLIPFFIFS-GLALPAFLVVDSYC---CLGTA 379 (943)
Q Consensus 310 aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~------kG~~P~~VVa-TaGTT~tGaIDpL~---eIa~~ 379 (943)
+|.+...++...+.+++.+|.+++| +|+++|+++++.... .+..+.+|+. ....+.+|.+-|.+ +|.+
T Consensus 141 ~y~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~- 218 (425)
T 2r2n_A 141 AYSGTLQSLHPLGCNIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYE- 218 (425)
T ss_dssp CCHHHHHHHGGGTCEEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHH-
T ss_pred CcHHHHHHHHHcCCEEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHH-
Confidence 8988888875444578888887665 999999999973210 0112445544 46677889887755 7777
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.+|+.+
T Consensus 219 -------------------~a~~~~~-------~li~De~~~~~ 236 (425)
T 2r2n_A 219 -------------------LARKYDF-------LIIEDDPYYFL 236 (425)
T ss_dssp -------------------HHHHTTC-------EEEEECTTGGG
T ss_pred -------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999864
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-10 Score=130.72 Aligned_cols=133 Identities=11% Similarity=0.066 Sum_probs=89.6
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..+....+|..+++++++++|.+.. -++++|||+||..++.+.+ .+| -.|
T Consensus 85 g~~~~~~~e~~a~~~la~~~g~~~~-----------~v~~~sGs~a~~~a~~~~~----------~~G---------d~V 134 (447)
T 3h7f_A 85 GCEHVDVVENLARDRAKALFGAEFA-----------NVQPHSGAQANAAVLHALM----------SPG---------ERL 134 (447)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEE-----------ECCCSSHHHHHHHHHHHHC----------CTT---------CEE
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCce-----------EEEeCCHHHHHHHHHHHhc----------CCC---------CEE
Confidence 4455667787777999999998642 3448899999988876542 123 236
Q ss_pred EecCCCchH-HHHHH---HHC-CccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 305 YCSDQAHSS-VEKAG---LIG-LVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 305 ~~S~~aHyS-v~KAa---~LG-~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
++++.+|.+ +..+. ..| ...+..++++ +++.+|+++|++++.... |.+++.+...+.++ .++++|++
T Consensus 135 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~~~i~~~~~~~~~~--~~l~~i~~ 207 (447)
T 3h7f_A 135 LGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFR-----PKVIIAGWSAYPRV--LDFAAFRS 207 (447)
T ss_dssp EEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHC-----CSEEEEECSSCCSC--CCHHHHHH
T ss_pred EecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcC-----CeEEEEcCCCCCCc--cCHHHHHH
Confidence 666667655 21111 122 1244556665 578999999999997642 34555544444333 38999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhc
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 421 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~G 421 (943)
+|++||+ ++++|.++.
T Consensus 208 --------------------l~~~~g~-------lli~Dea~~ 223 (447)
T 3h7f_A 208 --------------------IADEVGA-------KLLVDMAHF 223 (447)
T ss_dssp --------------------HHHHHTC-------EEEEECTTT
T ss_pred --------------------HHHHcCC-------EEEEECCch
Confidence 9999999 999999964
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-09 Score=118.19 Aligned_cols=144 Identities=11% Similarity=-0.034 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
....++.+|++++++.+.+ ..+||+||||||..|+.+++..... +|-. .++.+++....-
T Consensus 72 ~~~~~l~~~la~~~~~~~~----------~v~~~~gg~ea~~~al~~~~~~~~~------~g~~----~~~~vi~~~~~y 131 (430)
T 3i4j_A 72 DVLEEYAGRLARFVGLPTF----------RFWAVSGGSEATESAVKLARQYHVE------RGEP----GRFKVITRVPSY 131 (430)
T ss_dssp HHHHHHHHHHHHHTTCTTC----------EEEEESSHHHHHHHHHHHHHHHHHH------TTCT----TCCEEEEETTC-
T ss_pred HHHHHHHHHHHHhCCCCCC----------EEEEeCcHHHHHHHHHHHHHHHHHh------cCCC----CCcEEEEEeCCc
Confidence 3445667789999886543 6899999999999999998764322 1100 023344444444
Q ss_pred chHHHHHHHHCCc--------------cEEEEecCCC---CCcCHHHHHHHHHHhhccCCCcEEEEEecCCC-ccccccc
Q psy11047 311 HSSVEKAGLIGLV--------------NMRYIESDDK---LSLRGDKLIEAIERDKKKHLIPFFIFSGLALP-AFLVVDS 372 (943)
Q Consensus 311 HySv~KAa~LG~~--------------~v~~Vp~D~~---grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT-~tGaIDp 372 (943)
|....-+..++.. .+..++.++. +..|+++|+++|+.... ..+.+|++.-... .+|.+-+
T Consensus 132 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~--~~~~~vi~~p~~~~~~G~~~~ 209 (430)
T 3i4j_A 132 HGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGP--ETVAAFMAEPVVGASDAALAP 209 (430)
T ss_dssp ------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCG--GGEEEEEECSSCCGGGTTCCC
T ss_pred CCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCC--CCEEEEEEcCcccCcCCcccC
Confidence 5443333333221 4445555443 45688999999975310 1245555555445 6677666
Q ss_pred ----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 ----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 ----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++|.+ +|++||+ ++++|.+|.++
T Consensus 210 ~~~~l~~l~~--------------------l~~~~~~-------~li~DEv~~~~ 237 (430)
T 3i4j_A 210 APGYYERVRD--------------------ICDEAGI-------IFIADEVMSGM 237 (430)
T ss_dssp CTTHHHHHHH--------------------HHHHHTC-------EEEEECTTTTT
T ss_pred CHHHHHHHHH--------------------HHHHcCC-------EEEEechhhCC
Confidence 889999 9999999 99999999876
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.4e-09 Score=116.08 Aligned_cols=138 Identities=9% Similarity=-0.151 Sum_probs=90.6
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
+..+.++++++.+.+ ..+||+||||||..|+.+++...-.+ + .| ++-+++....-|.+.
T Consensus 90 ~l~~~la~~~~~~~~----------~v~~~~ggtea~~~ai~~~~~~~~~~-g--~~--------~~~vi~~~~~yh~~~ 148 (429)
T 1s0a_A 90 ELCRKLVAMTPQPLE----------CVFLADSGSVAVEVAMKMALQYWQAK-G--EA--------RQRFLTFRNGYHGDT 148 (429)
T ss_dssp HHHHHHHHHSCTTCC----------EEEEESSHHHHHHHHHHHHHHHHHHH-T--CC--------CCEEEEETTCCCCSS
T ss_pred HHHHHHHHhCCCCCC----------EEEEeCCHHHHHHHHHHHHHHHhccc-C--CC--------CCeEEEECCCCCCCc
Confidence 345578888876443 68999999999999998876421100 0 01 223444454667654
Q ss_pred HHHHHH-C------------CccEEEEecCC------CCCcCHHHHHHHHHHhhccCCCcEEEEEecC-CCccccccc--
Q psy11047 315 EKAGLI-G------------LVNMRYIESDD------KLSLRGDKLIEAIERDKKKHLIPFFIFSGLA-LPAFLVVDS-- 372 (943)
Q Consensus 315 ~KAa~L-G------------~~~v~~Vp~D~------~grmD~daLe~aI~~d~~kG~~P~~VVaTaG-TT~tGaIDp-- 372 (943)
.-++.+ | ...+..++++. .+.+|+++|+++|++.. ..+.+|+++-. .+.+|.+-|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~vi~~p~~~n~tG~~~~~~ 225 (429)
T 1s0a_A 149 FGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR---HEIAAVIIEPIVQGAGGMRMYHP 225 (429)
T ss_dssp HHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHT---TTEEEEEECSSEECTTTCEEBCT
T ss_pred hhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCC---CCEEEEEEeecccCCCCcccCCH
Confidence 444432 1 11356666642 24699999999997521 12455555544 466897666
Q ss_pred --HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 --YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 --L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++|.+ +|++||+ ++|+|.+|.++
T Consensus 226 ~~l~~i~~--------------------l~~~~~~-------~li~De~~~~~ 251 (429)
T 1s0a_A 226 EWLKRIRK--------------------ICDREGI-------LLIADEIATGF 251 (429)
T ss_dssp HHHHHHHH--------------------HHHHHTC-------EEEEECTTTTT
T ss_pred HHHHHHHH--------------------HHHHcCC-------EEEEeehhhCC
Confidence 899999 9999999 99999999765
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-08 Score=114.35 Aligned_cols=135 Identities=10% Similarity=-0.003 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 232 LEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 232 LE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
...++.+.|++++|.+ ..+||+|||+||..|+.++|.+... ..|+.. ..+-+|+....-|
T Consensus 108 ~~~~l~~~la~~~g~~------------~v~~~~sGseA~~~al~~a~~~~~~-----~~g~~~---gr~~vi~~~~~yh 167 (433)
T 1z7d_A 108 PLGICERYLTNLLGYD------------KVLMMNTGAEANETAYKLCRKWGYE-----VKKIPE---NMAKIVVCKNNFS 167 (433)
T ss_dssp HHHHHHHHHHHHHTCS------------EEEEESSHHHHHHHHHHHHHHHHHH-----TSCCCT---TCCEEEEETTC--
T ss_pred HHHHHHHHHHhhcCCC------------eEEEeCCHHHHHHHHHHHHHHHhhh-----ccCCCC---CCCeEEEEeCCcC
Confidence 3344556777777742 4789999999999999998753211 011100 0133455555666
Q ss_pred hHHHHHHHHCC------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc----cHHH
Q psy11047 312 SSVEKAGLIGL------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD----SYCC 375 (943)
Q Consensus 312 ySv~KAa~LG~------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID----pL~e 375 (943)
.+...++.++. ..+..+|.+ |+++|+++|+.. .+.+|++.--...+|.+- ++++
T Consensus 168 g~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~-----~~~~vi~ep~~~~~G~~~~~~~~l~~ 237 (433)
T 1z7d_A 168 GRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKDP-----NVCAFIVEPIQGEAGVIVPSDNYLQG 237 (433)
T ss_dssp ------------------------CEEEECTT-----CHHHHHHHHTST-----TEEEEEECSSBSTTTSBCCCTTHHHH
T ss_pred CcchhhhcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCCC-----CEEEEEEECCCCCCCccCCCHHHHHH
Confidence 66555543321 245556543 799999999521 255666554334467654 6999
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|.+ +|++||+ ++++|.++.|+
T Consensus 238 l~~--------------------l~~~~g~-------llI~DEv~~g~ 258 (433)
T 1z7d_A 238 VYD--------------------ICKKYNV-------LFVADEVQTGL 258 (433)
T ss_dssp HHH--------------------HHHHTTC-------EEEEECTTTTT
T ss_pred HHH--------------------HHHHcCC-------EEEEecCccCC
Confidence 999 9999999 99999999765
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.2e-09 Score=118.22 Aligned_cols=152 Identities=13% Similarity=-0.060 Sum_probs=109.5
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhC-CCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcC
Q psy11047 221 FTWASSPACTELEIITMNWLGKMIG-LPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEIN 299 (943)
Q Consensus 221 ~~~~~SPaateLE~~Vi~wLa~LlG-~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~ 299 (943)
..|..+....++...+.+|+++..| ++.. ....++|+|+|+++..++.+.. .+|- .
T Consensus 123 ~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~--------~~~i~~t~G~~~ai~~~~~~l~----------~~gd-----~ 179 (498)
T 3ihj_A 123 GSYSASQGVNCIREDVAAYITRRDGGVPAD--------PDNIYLTTGASDGISTILKILV----------SGGG-----K 179 (498)
T ss_dssp -----CCSCHHHHHHHHHHHHHHTTTCCCC--------GGGEEEESSHHHHHHHHHHHHC----------CCCG-----G
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCCCCC--------cccEEEcCCHHHHHHHHHHHHc----------CCCC-----C
Confidence 3455556667888899999999884 6532 1368999999999987765421 1220 0
Q ss_pred CceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc---cHH
Q psy11047 300 SRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD---SYC 374 (943)
Q Consensus 300 ~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID---pL~ 374 (943)
++-.|+++.-.|.++..++.+.+..++.+++++ ++.+|+++|+++|+..... ..+.+|+.+...+.+|.+- +++
T Consensus 180 ~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~-~~~k~i~l~np~NPTG~v~s~~~l~ 258 (498)
T 3ihj_A 180 SRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDH-CDPKVLCIINPGNPTGQVQSRKCIE 258 (498)
T ss_dssp GSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTT-SEEEEEEEESSCTTTCCCCCHHHHH
T ss_pred CCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhcc-CCCeEEEEECCCCCCCCcCCHHHHH
Confidence 123577888899998888865445788888875 4589999999999875332 2366777778888899884 467
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|.+ +|++||+ |+++|.+|+.+
T Consensus 259 ~i~~--------------------la~~~~~-------~li~De~y~~~ 280 (498)
T 3ihj_A 259 DVIH--------------------FAWEEKL-------FLLADEVYQDN 280 (498)
T ss_dssp HHHH--------------------HHHHHTC-------EEEEECTTTTC
T ss_pred HHHH--------------------HHHHcCc-------EEEEEcCcccc
Confidence 7887 9999999 99999999876
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.4e-09 Score=113.93 Aligned_cols=278 Identities=10% Similarity=-0.073 Sum_probs=169.1
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+.+++++++|.+.+ ..++|+|||+|+..++.+.. | -.|+++.-+|.+.
T Consensus 54 ~lr~~la~~~~~~~~----------~i~~t~g~~~al~~~~~~l~------------g---------d~Vi~~~p~~~~~ 102 (350)
T 3fkd_A 54 TLRQMLAKRNSVDNN----------AILVTNGPTAAFYQIAQAFR------------G---------SRSLIAIPSFAEY 102 (350)
T ss_dssp HHHHHHHHHTTCCGG----------GEEEESHHHHHHHHHHHHTT------------T---------CEEEEEESCCHHH
T ss_pred HHHHHHHHHhCcCHH----------HEEEcCCHHHHHHHHHHHHC------------C---------CEEEEeCCCcHHH
Confidence 467788999998654 68999999999987766421 1 1366778899998
Q ss_pred HHHHHHCCccEEEEec-CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIES-DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 393 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~-D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~ 393 (943)
..++..-+.+++.++. ++.+.+++ . .+.+|+.+...+.+|.+-|++++.+
T Consensus 103 ~~~~~~~g~~~~~v~~~~~~~~~~~--------~------~~~~v~i~~p~nptG~~~~~~~l~~--------------- 153 (350)
T 3fkd_A 103 EDACRMYEHEVCFYPSNEDIGEADF--------S------NMDFCWLCNPNNPDGRLLQRTEILR--------------- 153 (350)
T ss_dssp HHHHHHTTCEEEEEETTSCGGGSCC--------T------TCSEEEEESSCTTTCCCCCHHHHHH---------------
T ss_pred HHHHHHcCCeEEEEecCCccccCcc--------C------CCCEEEEeCCCCCcCCCCCHHHHHH---------------
Confidence 8887644458899998 66455554 1 2556777788889999999999999
Q ss_pred CchHHHHHHcC-CCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcC
Q psy11047 394 TNFPNFILSYF-PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQG 472 (943)
Q Consensus 394 RrfR~iar~~G-l~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~G 472 (943)
+++.++ . ++.+|.+|+.+ .+. +. ... ..+.
T Consensus 154 -----l~~~~~~~-------~li~Dea~~~~-~~~-------------------------------~~-~~~---~~~~- 184 (350)
T 3fkd_A 154 -----LLNDHPDT-------TFVLDQSYVSF-TTE-------------------------------EV-IRP---ADIK- 184 (350)
T ss_dssp -----HHHHCTTS-------EEEEECTTTTS-CSS-------------------------------CC-CCG---GGGT-
T ss_pred -----HHHhCCCC-------EEEEECchhhh-ccC-------------------------------cc-hhh---HHhh-
Confidence 888876 6 89999999765 220 00 000 1111
Q ss_pred CCCeeEEEEcCCCccCcc---CcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy11047 473 LGRAQNFTIVPSSLLRVK---NSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHI 549 (943)
Q Consensus 473 ie~ADSItiDpHK~L~vr---~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I 549 (943)
....+-+..++||+++.. -...+ .++..+..-... ...+ ....+.+++.. +.+
T Consensus 185 ~~~~~i~~~S~sK~~~~~G~r~G~~~-----~~~~~~~~~~~~----~~~~------~~~~~~~~~~~---------~~l 240 (350)
T 3fkd_A 185 GRKNLVMVYSFSHAYGIPGLRIGYIV-----ANKDFMKRVAAF----STPW------AVNALAIEAAK---------FIL 240 (350)
T ss_dssp TCSSEEEEEESHHHHSCGGGCCEEEE-----CCHHHHHHHHTT----CCTT------CSCHHHHHHHH---------HHH
T ss_pred cCCCEEEEecCchhccCcchheEeEE-----eCHHHHHHHHHh----CCCC------CCCHHHHHHHH---------HHH
Confidence 123456777899988722 11111 011111000000 0000 01122222221 222
Q ss_pred HHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCcc
Q psy11047 550 REIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLG 629 (943)
Q Consensus 550 ~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~ 629 (943)
+.. . .|. +.+++ ..++++++.+.|.+.|++++. ++..+
T Consensus 241 ~~~----~--~~~----------~~~~~-------------------------~~~~~~~l~~~L~~~~~~~~~-~~~~~ 278 (350)
T 3fkd_A 241 IHP----A--QFT----------LPIRK-------------------------WQRNTVDFITALNRLDGVEVH-PSGTT 278 (350)
T ss_dssp HCT----T--TTC----------CCHHH-------------------------HHHHHHHHHHHHHHSTTEEEC-CCSSS
T ss_pred hCH----H--HHH----------HHHHH-------------------------HHHHHHHHHHHHhcCCCcEEC-CCCCc
Confidence 210 0 000 00000 235677788888888999884 56677
Q ss_pred EEEEEecCCChHHHHHHHHHhc-cCcEEEeecc-c--CCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 630 MVVIRLLGENILTEKLLKRLNS-KGRLHCVPAS-L--RIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 630 iV~Fr~~g~n~l~~~Ll~~L~~-~G~~~~s~t~-~--~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
.+.+++++. -..++.++|.+ .|. .+.+.. . .+..++|++++ +.+++++++++|+++..
T Consensus 279 ~~~~~~~~~--~~~~l~~~L~~~~gi-~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 279 FFLLRLKKG--TAAELKKYMLEEYNM-LIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALETFLE 340 (350)
T ss_dssp EEEEEESSS--CHHHHHHHHHHTTCE-ECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCC--CHHHHHHHHHHHCCE-EEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence 788888754 25788888888 775 454432 2 23679999765 78899999999887754
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-09 Score=118.40 Aligned_cols=161 Identities=12% Similarity=0.004 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhccC-----ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINCLG-----FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRT 280 (943)
Q Consensus 206 silgd~L~~alN~n~-----~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~ 280 (943)
..+.+.+...+.... ..|.......++...+.+|+.+..|++.. ....++|+|||+|+..++.+..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~--------~~~i~~t~G~t~al~~~~~~l~- 119 (417)
T 3g7q_A 49 DYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIE--------PQNIALTNGSQSAFFYLFNLFA- 119 (417)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCC--------GGGEEEESCHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCC--------cccEEEeCCcHHHHHHHHHHHc-
Confidence 344555554442221 23444555678888888898888876532 1368999999999988877542
Q ss_pred HHHHhhcccCCCchhhhcCCceEEEec-CCCchHHHHHHH-HC----C-ccEEEEecCC-CCCcCHHHHHHHHHHhhccC
Q psy11047 281 EAIRKYQQSHPELEHAEINSRLVAYCS-DQAHSSVEKAGL-IG----L-VNMRYIESDD-KLSLRGDKLIEAIERDKKKH 352 (943)
Q Consensus 281 ~~l~~~~~~~pGl~~~~i~~~~vV~~S-~~aHySv~KAa~-LG----~-~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG 352 (943)
.+|-. + .+-.|+++ .-+|.....++. .+ . ..+..++.+. .+.+|+++|+ +..
T Consensus 120 ---------~~gd~--~--~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~----- 179 (417)
T 3g7q_A 120 ---------GRRAD--G--STKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGE----- 179 (417)
T ss_dssp ---------BC--------CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCT-----
T ss_pred ---------CCCcc--C--CcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--ccc-----
Confidence 12200 0 11246666 545555544442 21 1 2344455432 4578888887 322
Q ss_pred CCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 353 LIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 353 ~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+.+|+.+...+.+|.+-| +++|.+ +|++||+ ++++|.+|+..
T Consensus 180 -~~~~v~~~~p~NptG~~~~~~~~~~l~~--------------------~a~~~~~-------~li~De~~~~~ 225 (417)
T 3g7q_A 180 -ETGMICVSRPTNPTGNVITDEELMKLDR--------------------LANQHNI-------PLVIDNAYGVP 225 (417)
T ss_dssp -TEEEEEEESSCTTTCCCCCHHHHHHHHH--------------------HHHHTTC-------CEEEECTTCTT
T ss_pred -CceEEEECCCCCCCCCccCHHHHHHHHH--------------------HHHHcCC-------EEEEeCCCccc
Confidence 2667777888889999877 777777 9999999 99999999753
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-09 Score=121.58 Aligned_cols=126 Identities=7% Similarity=0.035 Sum_probs=92.2
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|...++|.. |+++.|.+ ..+++++|++|+..+ .+ .+ .+| -.
T Consensus 64 ~~~p~~~~l~~~----la~l~g~~------------~~~~~~sG~~Ai~~~-~~----l~------~~g---------d~ 107 (400)
T 3nmy_A 64 THNPTRFAYERC----VAALEGGT------------RAFAFASGMAATSTV-ME----LL------DAG---------SH 107 (400)
T ss_dssp TCCHHHHHHHHH----HHHHHTCS------------EEEEESSHHHHHHHH-HT----TS------CTT---------CE
T ss_pred CCCHHHHHHHHH----HHHHhCCC------------CEEEecCHHHHHHHH-HH----Hc------CCC---------CE
Confidence 345667777764 67888764 357888889987652 21 11 122 24
Q ss_pred EEecCCCchHHHHHH-HH----CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 304 AYCSDQAHSSVEKAG-LI----GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 304 V~~S~~aHySv~KAa-~L----G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
|+++...|.+....+ .+ .+..++.++.+ |+++|+++|+++ +.+|+....++.+|.+.|+++|++
T Consensus 108 Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------~~~v~~e~~~np~G~~~~l~~i~~ 176 (400)
T 3nmy_A 108 VVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT-----DPAAFKAAIRAD------TKMVWIETPTNPMLKLVDIAAIAV 176 (400)
T ss_dssp EEEESSCCHHHHHHHHHTHHHHHCCEEEEECTT-----SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH
T ss_pred EEEeCCCchHHHHHHHHhhHhhcCeEEEEECCC-----CHHHHHHHhccC------CCEEEEECCCCCCCeeecHHHHHH
Confidence 777888998766654 22 23477777764 799999988753 678888888999999999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.+|+..
T Consensus 177 --------------------la~~~g~-------~livDe~~~~~ 194 (400)
T 3nmy_A 177 --------------------IARKHGL-------LTVVDNTFASP 194 (400)
T ss_dssp --------------------HHHHTTC-------EEEEECTTTHH
T ss_pred --------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999743
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-09 Score=118.19 Aligned_cols=163 Identities=6% Similarity=-0.105 Sum_probs=110.5
Q ss_pred HHHHHHHHHH-HHhcc-CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCC--cEEEcCChHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSD-AINCL-GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPG--GGVLQTTASESTLICLLAGRT 280 (943)
Q Consensus 205 ~silgd~L~~-alN~n-~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~--~GvfTsGGTeANL~AL~aAR~ 280 (943)
+.+. +.+.. ++... ...|...+...++...+.+|+....+.+-. .. ..++|+|||+|+..++.....
T Consensus 47 ~~v~-~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~--------~~~~~i~~t~g~~~a~~~~~~~~~~ 117 (397)
T 3fsl_A 47 QAVA-EAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLK--------QQRVATIQTLGGSGALKVGADFLKR 117 (397)
T ss_dssp HHHH-HHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH--------TTCEEEEEESHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCccccc--------ccceEEEEcCCcHHHHHHHHHHHHh
Confidence 4554 44444 55432 233444445566766666666554332101 12 579999999999887543221
Q ss_pred HHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEec--CCCCCcCHHHHHHHHHHhhccCCCcEEE
Q psy11047 281 EAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIES--DDKLSLRGDKLIEAIERDKKKHLIPFFI 358 (943)
Q Consensus 281 ~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~kG~~P~~V 358 (943)
+ .+| -.|+++.-+|.+...++...+.+++.++. ++++.+|+++|++++++.. ..+.++
T Consensus 118 --~------~~g---------d~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v 177 (397)
T 3fsl_A 118 --Y------FPE---------SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQ---AGSIVL 177 (397)
T ss_dssp --H------CTT---------CCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCC---TTCEEE
T ss_pred --c------CCC---------CeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCC---CCCEEE
Confidence 1 122 23667788999988887654458888888 5688999999999997531 125677
Q ss_pred EEecCCCccccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 359 FSGLALPAFLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 359 VaTaGTT~tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+...+.+|.+ +++++|++ +|++||+ ++++|.+|+.+
T Consensus 178 ~~~~p~nptG~~~~~~~l~~l~~--------------------~~~~~~~-------~li~De~~~~~ 218 (397)
T 3fsl_A 178 LHPCCHNPTGADLTNDQWDAVIE--------------------ILKAREL-------IPFLDIAYQGF 218 (397)
T ss_dssp ECSSSCTTTCCCCCHHHHHHHHH--------------------HHHHTTC-------EEEEEESCTTS
T ss_pred EeCCCCCCCCcCCCHHHHHHHHH--------------------HHHhCCE-------EEEEecCchhh
Confidence 777788889988 55668888 9999999 99999999876
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.8e-09 Score=118.90 Aligned_cols=133 Identities=9% Similarity=-0.047 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
.+..++.++|++++|.+ ..+||+|||+||..|+.+++.+...+ + .+| .+-+|+.+..-
T Consensus 99 ~~~~~l~~~la~~~g~~------------~v~~~~ggteA~~~al~~~~~~~~~~-~--~~g-------~~~vi~~~~~y 156 (420)
T 2pb2_A 99 EPALRLGRKLIDATFAE------------RVLFMNSGTEANETAFKLARHYACVR-H--SPF-------KTKIIAFHNAF 156 (420)
T ss_dssp HHHHHHHHHHHHHSSCS------------EEEEESSHHHHHHHHHHHHHHHHHHH-T--CTT-------CCEEEEETTCC
T ss_pred HHHHHHHHHHHhhCCCC------------eEEEeCCHHHHHHHHHHHHHHHhhhc-c--CCC-------CCEEEEEeCCc
Confidence 34445667778888732 47999999999999999887542210 0 011 12355556667
Q ss_pred chHHHHHHHH-CCc-----------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccc----cccHH
Q psy11047 311 HSSVEKAGLI-GLV-----------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLV----VDSYC 374 (943)
Q Consensus 311 HySv~KAa~L-G~~-----------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGa----IDpL~ 374 (943)
|.+...++.+ |.. .+..+|.+ |+++|+++|+++ +.+|+.+-..+..|. .++++
T Consensus 157 h~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~~~------~~~vi~~p~~~~gG~~~~~~~~l~ 225 (420)
T 2pb2_A 157 HGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMDDH------TCAVVVEPIQGEGGVQAATPEFLK 225 (420)
T ss_dssp CCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHH
T ss_pred CCcCHHHHHhcCCccccccCCCCCCCeEEecCC-----CHHHHHHHhccC------ceEEEEeCCcCCCCeecCCHHHHH
Confidence 7666655543 321 26666653 799999988643 556665543333454 36789
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|.+ +|++||+ ++++|.+|.++
T Consensus 226 ~l~~--------------------l~~~~gi-------~lI~Dev~~g~ 247 (420)
T 2pb2_A 226 GLRD--------------------LCDEHQA-------LLVFDEVQCGM 247 (420)
T ss_dssp HHHH--------------------HHHHTTC-------EEEEECTTTTT
T ss_pred HHHH--------------------HHHHcCC-------EEEEEcCCcCc
Confidence 9999 9999999 99999999765
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.2e-08 Score=112.95 Aligned_cols=143 Identities=15% Similarity=0.016 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
....++.++|+++++.+.+ ..+||+||||||..|+.+||.+...+ + .++ ++-+|.....-
T Consensus 99 ~~~~~lae~l~~~~~~~~~----------~v~~~~sGseA~~~aik~a~~~~~~~-g--~~~-------~~~ii~~~~~y 158 (472)
T 3hmu_A 99 VPAIALAQKLAELAPGDLN----------HVFFAGGGSEANDTNIRMVRTYWQNK-G--QPE-------KTVIISRKNAY 158 (472)
T ss_dssp HHHHHHHHHHHHHSCTTEE----------EEEEESSHHHHHHHHHHHHHHHHHHT-T--CTT-------CCEEEEETTCC
T ss_pred HHHHHHHHHHHHhCCCCCC----------EEEEeCCHHHHHHHHHHHHHHHHHhc-C--CCC-------CCEEEEEcCcC
Confidence 3444566677888765432 57999999999999999998753211 0 111 23455556666
Q ss_pred chHHHHHHHHCCc-----------cEEEEecCC-----CCCcC--------HHHHHHHHHHhhccCCCcEEEEEecCCCc
Q psy11047 311 HSSVEKAGLIGLV-----------NMRYIESDD-----KLSLR--------GDKLIEAIERDKKKHLIPFFIFSGLALPA 366 (943)
Q Consensus 311 HySv~KAa~LG~~-----------~v~~Vp~D~-----~grmD--------~daLe~aI~~d~~kG~~P~~VVaTaGTT~ 366 (943)
|-+..-++.++.. .+..++... ++ +| .++|++.|+.... ..+.+|++.--...
T Consensus 159 Hg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~--~~~aavi~epv~~~ 235 (472)
T 3hmu_A 159 HGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGE--NRVAAFIAEPVQGA 235 (472)
T ss_dssp CCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCG--GGEEEEEECSSBST
T ss_pred CCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCC--CCEEEEEEcCccCC
Confidence 6554444434321 356666432 22 44 7888888874211 12455555444444
Q ss_pred cccccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 367 FLVVDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 367 tGaIDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.|.+-| +++|.+ +|++||+ ++.+|-++.|+
T Consensus 236 gG~~~~~~~~l~~l~~--------------------l~~~~gi-------llI~DEv~~gf 269 (472)
T 3hmu_A 236 GGVIVAPDSYWPEIQR--------------------ICDKYDI-------LLIADEVICGF 269 (472)
T ss_dssp TTCBCCCTTHHHHHHH--------------------HHHHTTC-------EEEEECTTTTT
T ss_pred CCcccCCHHHHHHHHH--------------------HHHHcCC-------EEEEEccccCC
Confidence 567666 899999 9999999 99999999876
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.12 E-value=9.2e-10 Score=122.97 Aligned_cols=124 Identities=9% Similarity=-0.008 Sum_probs=91.0
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
.|...++|. .+++++|.+. .+++++||+|+..++. . + .+| -.|+
T Consensus 66 ~p~~~~l~~----~la~~~g~~~------------~i~~~sG~~ai~~~~~-l----~------~~g---------d~Vl 109 (403)
T 3cog_A 66 NPTRNCLEK----AVAALDGAKY------------CLAFASGLAATVTITH-L----L------KAG---------DQII 109 (403)
T ss_dssp CHHHHHHHH----HHHHHHTCSE------------EEEESCHHHHHHHHHT-T----S------CTT---------CEEE
T ss_pred CchHHHHHH----HHHHHhCCCc------------EEEECCHHHHHHHHHH-H----h------CCC---------CEEE
Confidence 455566665 5567777652 4666677888866653 1 1 122 2477
Q ss_pred ecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 306 CSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 306 ~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
+++..|.+..... ...+.+++.++.+ |+++|+++|+++ +.+|+.+..++.+|.+-|+++|++
T Consensus 110 ~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~i~~~------t~~v~~~~p~nptG~~~~l~~i~~--- 175 (403)
T 3cog_A 110 CMDDVYGGTNRYFRQVASEFGLKISFVDCS-----KIKLLEAAITPE------TKLVWIETPTNPTQKVIDIEGCAH--- 175 (403)
T ss_dssp EESSCCHHHHHHHHHTGGGGTCEEEEECTT-----SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH---
T ss_pred EeCCCcchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeeeCHHHHHH---
Confidence 7888998866644 2223477888875 799999888643 677888889999999999999999
Q ss_pred ccccccccccccCchHHHHHHcC-CCCCccchhhhHHhhhcCC
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYF-PKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~G-l~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++| + ++++|.+|+.+
T Consensus 176 -----------------la~~~g~~-------~livD~~~~~~ 194 (403)
T 3cog_A 176 -----------------IVHKHGDI-------ILVVDNTFMSP 194 (403)
T ss_dssp -----------------HHTSSSCC-------EEEEECTTTCT
T ss_pred -----------------HHHHcCCC-------EEEEECCCccc
Confidence 999999 9 99999999876
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-09 Score=118.12 Aligned_cols=148 Identities=5% Similarity=-0.136 Sum_probs=102.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|.......++...+.+|+.+..+.+.. ...++|+|||+|+..++.+.. .+| -
T Consensus 76 y~~~~g~~~lr~~ia~~~~~~~~~~~~---------~~i~~t~g~~~al~~~~~~l~----------~~g---------d 127 (418)
T 3rq1_A 76 YAPIAGIPDFLCAAEKECFGNFRPEGH---------IRSIATAGGTGGIHHLIHNYT----------EPG---------D 127 (418)
T ss_dssp CCCTTCCHHHHHHHHHHHHGGGCCSSE---------EEEEEESHHHHHHHHHHHHHS----------CTT---------C
T ss_pred CCCCCChHHHHHHHHHHHhcccCcccc---------ccEEECCchHHHHHHHHHHhc----------CCC---------C
Confidence 333344677888888888776653311 258999999999988876421 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecC-CCcccccccHHHhhhhc
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLA-LPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaG-TT~tGaIDpL~eIa~~~ 380 (943)
.|++++-+|.+...++...+.+++.+|++ +++.+|+++|+++|++..... ...+++.+.. .+.+|.+-|.+++.+
T Consensus 128 ~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~-~~~~vi~~~p~~NPtG~~~~~~~l~~-- 204 (418)
T 3rq1_A 128 EVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQ-TNVVVIFNTPGNNPTGYSIEDKDWDS-- 204 (418)
T ss_dssp EEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHC-SEEEEEEECSSCTTTCCCCCHHHHHH--
T ss_pred EEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccC-CCEEEEEeCCCCCCCCCCCCHHHHHH--
Confidence 46777888888888876545588889884 567999999999998632111 1235555545 788999988666554
Q ss_pred cccccccccccccCchHHHHH------HcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFIL------SYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar------~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+..+|+ +||+ |+++|.+|.++
T Consensus 205 ---------------l~~~~~~~~~~~~~~~-------~li~De~y~~~ 231 (418)
T 3rq1_A 205 ---------------ILNFLKDLVAIGRNNV-------IIGIDVAYLDY 231 (418)
T ss_dssp ---------------HHHHHHHHHHTSSCEE-------EEEEECTTGGG
T ss_pred ---------------HHHHHHHhhhccCCCe-------EEEEecccccc
Confidence 111666 8999 99999999765
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-08 Score=113.83 Aligned_cols=135 Identities=7% Similarity=-0.130 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhCCC-ccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 234 IITMNWLGKMIGLP-EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p-~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
.++.+.+++++|.+ .+ ..+||+||||||..|+.+++.. + ++-+++....-|.
T Consensus 89 ~~l~~~la~~~~~~~~~----------~v~~~~gg~ea~~~ai~~~~~~---------~--------~~~vi~~~p~yh~ 141 (419)
T 2eo5_A 89 LELAKKLVTYSPGNFQK----------KVFFSNSGTEAIEASIKVVKNT---------G--------RKYIIAFLGGFHG 141 (419)
T ss_dssp HHHHHHHHHHSSCSSCE----------EEEEESSHHHHHHHHHHHHHTT---------S--------CCEEEEETTCCCC
T ss_pred HHHHHHHHHhCCCCcCC----------EEEEeCchHHHHHHHHHHHHHh---------h--------CCcEEEECCCcCC
Confidence 34556788999875 32 5899999999999999876521 1 1234555556675
Q ss_pred HHHHHHHH-C------------CccEEEEecCCCCC----------------cCHHHHH-HHHHHhhccCCCcEEEEEec
Q psy11047 313 SVEKAGLI-G------------LVNMRYIESDDKLS----------------LRGDKLI-EAIERDKKKHLIPFFIFSGL 362 (943)
Q Consensus 313 Sv~KAa~L-G------------~~~v~~Vp~D~~gr----------------mD~daLe-~aI~~d~~kG~~P~~VVaTa 362 (943)
+..-++.+ | ...++.+|.++..+ +|+++|+ ++|++.. ....+.+|++.-
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~~~vi~~p 220 (419)
T 2eo5_A 142 RTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLV-PPEEVAGIFFEP 220 (419)
T ss_dssp SSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTC-CGGGEEEEEECS
T ss_pred CCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhcc-CCCCEEEEEEeC
Confidence 55554432 1 12578888865543 4788999 8887421 001244555544
Q ss_pred CCCccccccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 363 ALPAFLVVDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 363 GTT~tGaIDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
....+|.+-| +++|.+ +|++||+ ++|+|.+|.++
T Consensus 221 ~~~~tG~~~~~~~~l~~l~~--------------------l~~~~~~-------~li~DE~~~~~ 258 (419)
T 2eo5_A 221 IQGEGGYVIPPKNFFAELQK--------------------LAKKYGI-------LLVDDEVQMGL 258 (419)
T ss_dssp SBTTTTSBCCCTTHHHHHHH--------------------HHHHHTC-------EEEEECTTTTT
T ss_pred ccCCCCCccCCHHHHHHHHH--------------------HHHHcCC-------EEEEeccccCC
Confidence 3344687555 889998 9999999 99999999865
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.10 E-value=9.8e-09 Score=114.85 Aligned_cols=142 Identities=11% Similarity=-0.071 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
..++.+.++++++.+.+ ..+||+|||+||..|+.+++..... .+ .++ ++-+++.+..-|.
T Consensus 95 ~~~l~~~la~~~~~~~~----------~v~~~~ggsea~~~al~~~~~~~~~-~g--~~~-------~~~vi~~~~~yhg 154 (449)
T 3a8u_X 95 SFQLAEKITDLTPGNLN----------HVFFTDSGSECALTAVKMVRAYWRL-KG--QAT-------KTKMIGRARGYHG 154 (449)
T ss_dssp HHHHHHHHHTTSSTTEE----------EEEEESSHHHHHHHHHHHHHHHHHH-TT--CTT-------CCEEEEETTCCCC
T ss_pred HHHHHHHHHHhCCCCCC----------EEEEcCcHHHHHHHHHHHHHHHHHh-cC--CCC-------CCEEEEECCCcCC
Confidence 34556677888765433 5899999999999999988753211 00 011 2345556777776
Q ss_pred HHHHHHHHCC------------ccEEEEecCCCCC-----cC--------HHHHHHHHHHhhccCCCcEEEEEecCCCcc
Q psy11047 313 SVEKAGLIGL------------VNMRYIESDDKLS-----LR--------GDKLIEAIERDKKKHLIPFFIFSGLALPAF 367 (943)
Q Consensus 313 Sv~KAa~LG~------------~~v~~Vp~D~~gr-----mD--------~daLe~aI~~d~~kG~~P~~VVaTaGTT~t 367 (943)
+...++.+.. ..+..++++...+ +| +++|+++|+.... ..+.+|+++-..+.+
T Consensus 155 ~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~--~~~~~vi~~p~~~~t 232 (449)
T 3a8u_X 155 VNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDA--SNIAAVFVEPLAGSA 232 (449)
T ss_dssp SSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCG--GGEEEEEECSSBTTT
T ss_pred CChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCC--CCEEEEEEcCccCCC
Confidence 6555553321 2456676543222 56 9999999975310 124566655444558
Q ss_pred ccccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 368 LVVDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 368 GaIDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|.+-| +++|.+ +|++||+ ++++|.++.++
T Consensus 233 G~~~~~~~~l~~l~~--------------------l~~~~~~-------~li~Dev~~~~ 265 (449)
T 3a8u_X 233 GVLVPPEGYLKRNRE--------------------ICNQHNI-------LLVFDEVITGF 265 (449)
T ss_dssp TCBCCCTTHHHHHHH--------------------HHHHHTC-------EEEEECTTTTT
T ss_pred CCccCCHHHHHHHHH--------------------HHHHhCC-------EEEEeccccCc
Confidence 98766 999999 9999999 99999999765
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.2e-08 Score=110.70 Aligned_cols=144 Identities=14% Similarity=-0.029 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
+...++.++|+++++.+.+ ..+||+||||||..|+.++|...... + .++ ++.++.....-
T Consensus 95 ~~~~~la~~l~~~~~~~~~----------~v~~~~gGseA~~~al~~~~~~~~~~-g--~~~-------~~~vi~~~~~y 154 (460)
T 3gju_A 95 EASITLAKMIIDRAPKGMS----------RVYFGLSGSDANETNIKLIWYYNNVL-G--RPE-------KKKIISRWRGY 154 (460)
T ss_dssp HHHHHHHHHHHHHSCTTEE----------EEEEESSHHHHHHHHHHHHHHHHHHT-T--CTT-------CCEEEEETTCC
T ss_pred HHHHHHHHHHHhhCCCCcC----------EEEEeCchHHHHHHHHHHHHHHHHhc-C--CCC-------CCEEEEECCCc
Confidence 4455667788888755433 57999999999999999998653210 0 011 23455556666
Q ss_pred chHHHHHHHHCC------------ccEEEEecCC-----CCCcC--------HHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 311 HSSVEKAGLIGL------------VNMRYIESDD-----KLSLR--------GDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 311 HySv~KAa~LG~------------~~v~~Vp~D~-----~grmD--------~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
|-+..-++.++. ..+..++... +.-++ .++|+++|+.... ..+.+|++.-...
T Consensus 155 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~--~~~aaii~ep~~~ 232 (460)
T 3gju_A 155 HGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGP--ETIAAFIGEPILG 232 (460)
T ss_dssp CCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCG--GGEEEEEECSSBS
T ss_pred CCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCC--CCEEEEEECCccC
Confidence 655544443322 1456666432 11233 5888888874211 1245556554444
Q ss_pred ccccccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 366 AFLVVDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 366 ~tGaIDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
..|.+-| +++|.+ +|++||+ ++++|-+|.++
T Consensus 233 ~~G~~~~~~~~l~~l~~--------------------l~~~~~~-------llI~DEv~~g~ 267 (460)
T 3gju_A 233 TGGIVPPPAGYWEKIQA--------------------VLKKYDV-------LLVADEVVTGF 267 (460)
T ss_dssp TTTSBCCCTTHHHHHHH--------------------HHHHTTC-------EEEEECTTTTT
T ss_pred CCCCccCCHHHHHHHHH--------------------HHHHcCC-------EEEEeccccCC
Confidence 4566544 888998 9999999 99999999876
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.5e-08 Score=110.62 Aligned_cols=143 Identities=7% Similarity=-0.123 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
.+...++.+||+++++.+. . .+||+||||||..|+.++|.+... .|-. .++-++.....
T Consensus 90 ~~~~~~la~~l~~~~~~~~----------~-v~~~~ggseA~~~al~~~~~~~~~------~g~~----~~~~vi~~~~~ 148 (452)
T 3n5m_A 90 HEPAIKLAEKLNEWLGGEY----------V-IFFSNSGSEANETAFKIARQYYAQ------KGEP----HRYKFMSRYRG 148 (452)
T ss_dssp EHHHHHHHHHHHHHHTSCE----------E-EEEESSHHHHHHHHHHHHHHHHHT------TTCT----TCCEEEEETTC
T ss_pred CHHHHHHHHHHHHhCCCCc----------e-EEEeCchHHHHHHHHHHHHHHHHh------cCCC----CCCEEEEECCC
Confidence 4555677889999987643 2 789999999999999998854211 0000 12345555666
Q ss_pred CchHHHHHHHHCC------------ccEEEEecCCCCCc------------CHHHHHHHHHHhhccCCCcEEEEEecC-C
Q psy11047 310 AHSSVEKAGLIGL------------VNMRYIESDDKLSL------------RGDKLIEAIERDKKKHLIPFFIFSGLA-L 364 (943)
Q Consensus 310 aHySv~KAa~LG~------------~~v~~Vp~D~~grm------------D~daLe~aI~~d~~kG~~P~~VVaTaG-T 364 (943)
-|-+..-+..++. ..+..++.....+. +.++|+++|+... ...+.+|++.-. .
T Consensus 149 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~~~vi~ep~~~ 226 (452)
T 3n5m_A 149 YHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWEL--SETIAAFIMEPIIT 226 (452)
T ss_dssp CCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHC--GGGEEEEEECSSBT
T ss_pred cCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcC--CCCEEEEEEccccC
Confidence 6654443333321 13555654222221 2899999997311 112455555544 4
Q ss_pred Cccccccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 365 PAFLVVDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 365 T~tGaIDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|.+-| +++|.+ +|++||+ ++++|-+|.++
T Consensus 227 n-~G~~~~~~~~l~~l~~--------------------l~~~~~~-------llI~DEv~~g~ 261 (452)
T 3n5m_A 227 G-GGILMAPQDYMKAVHE--------------------TCQKHGA-------LLISDEVICGF 261 (452)
T ss_dssp T-TTCBCCCTTHHHHHHH--------------------HHHHHTC-------EEEEECTTTTT
T ss_pred C-CCeeeCCHHHHHHHHH--------------------HHHHcCC-------EEEEecchhCC
Confidence 6 887766 899999 9999999 99999998876
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7e-09 Score=116.82 Aligned_cols=132 Identities=8% Similarity=-0.077 Sum_probs=87.4
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+++++++|.+ ..+||+|||+||..|+.++|.+... .+|+.. ..+-+|+....-|.+.
T Consensus 122 ~l~~~la~~~g~~------------~v~~~~sGseA~~~al~~~~~~~~~-----~~g~~~---g~~~vi~~~~~yhg~~ 181 (439)
T 2oat_A 122 EYEEYITKLFNYH------------KVLPMNTGVEAGETACKLARKWGYT-----VKGIQK---YKAKIVFAAGNFWGRT 181 (439)
T ss_dssp HHHHHHHHHHTCS------------EEEEESSHHHHHHHHHHHHHHHHHH-----TTCCCT---TCCEEEEETTCCCCSS
T ss_pred HHHHHHHHhcCCC------------EEEEeCCHHHHHHHHHHHHHHHhhh-----ccCCCC---CCCeEEEEcCCCCCCC
Confidence 4455667777732 4789999999999999998753211 112100 0134555566667666
Q ss_pred HHHHHHCC------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc----cHHHhhh
Q psy11047 315 EKAGLIGL------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD----SYCCLGT 378 (943)
Q Consensus 315 ~KAa~LG~------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID----pL~eIa~ 378 (943)
..++.+.. ..+..+|.+ |+++|+++|+.. .+.+|++.-....+|.+- ++++|.+
T Consensus 182 ~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~-----~~~~vi~ep~~~~~G~~~~~~~~l~~l~~ 251 (439)
T 2oat_A 182 LSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQDP-----NVAAFMVEPIQGEAGVVVPDPGYLMGVRE 251 (439)
T ss_dssp HHHHTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHTTST-----TEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred HhHhhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHhCCC-----CEEEEEEECCCCCCCCcCCCHHHHHHHHH
Confidence 65554322 356777753 799999988521 245566554334467654 6999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.++.|+
T Consensus 252 --------------------l~~~~gi-------llI~DEv~~g~ 269 (439)
T 2oat_A 252 --------------------LCTRHQV-------LFIADEIQTGL 269 (439)
T ss_dssp --------------------HHHHTTC-------EEEEECTTTTT
T ss_pred --------------------HHHHcCC-------EEEEeccccCC
Confidence 9999999 99999999765
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.09 E-value=8.1e-09 Score=114.77 Aligned_cols=320 Identities=9% Similarity=-0.080 Sum_probs=171.7
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHH-HHHHHHHHHHHHhhcccCCCchhhhc-C-CceEEEecCCCch
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTL-ICLLAGRTEAIRKYQQSHPELEHAEI-N-SRLVAYCSDQAHS 312 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL-~AL~aAR~~~l~~~~~~~pGl~~~~i-~-~~~vV~~S~~aHy 312 (943)
.++.+++.+|.+.+ ..++|+|+|++++ ..+..+- .+.. .+|-. .+ . ....|++.+-+|.
T Consensus 81 lr~~ia~~~~~~~~----------~i~~t~G~~~al~l~~~~~~l---~~~~---~~g~~--~~~~~d~~~Vl~~~p~y~ 142 (422)
T 3d6k_A 81 IRELWAEALGLPAD----------LVVAQDGSSLNIMFDLISWSY---TWGN---NDSSR--PWSAEEKVKWLCPVPGYD 142 (422)
T ss_dssp HHHHHHHHHTCCGG----------GEEECSSCHHHHHHHHHHHHH---HHCC---TTCSS--CGGGSSCCEEEEEESCCH
T ss_pred HHHHHHHHhCCChh----------HEEEecchHHHHHHHHHHHHh---cCcc---ccccc--ccccCCCCEEEEeCCccH
Confidence 33445556677654 6899999999974 3322221 1100 00100 00 0 0124667777888
Q ss_pred HHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEE-EecCCCcccccccHH---Hhhhhccccccccc
Q psy11047 313 SVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIF-SGLALPAFLVVDSYC---CLGTAMIVKGLGFY 388 (943)
Q Consensus 313 Sv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VV-aTaGTT~tGaIDpL~---eIa~~~~~~d~~~~ 388 (943)
....++..-+.+++.+|.+++| +|+++|+++++.. .+.+|+ .+...+.+|.+-|.+ +|.+
T Consensus 143 ~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~-----~~~~v~~~~~~~NPtG~~~~~~~l~~l~~---------- 206 (422)
T 3d6k_A 143 RHFTITEHFGFEMINVPMTDEG-PDMGVVRELVKDP-----QVKGMWTVPVFGNPTGVTFSEQTCRELAE---------- 206 (422)
T ss_dssp HHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHH----------
T ss_pred HHHHHHHHcCCEEEecCCCCCC-CCHHHHHHHHhcC-----CCeEEEEcCCCCCCCCCCCCHHHHHHHHH----------
Confidence 8888775333478889987776 9999999998642 145555 456677889987766 6666
Q ss_pred cccccCchHHHHH-HcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchh
Q psy11047 389 KMKLQTNFPNFIL-SYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467 (943)
Q Consensus 389 ~i~L~RrfR~iar-~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r 467 (943)
+|+ +||+ ++++|.+|+.. .|. . ++.-.. ...
T Consensus 207 ----------~~~~~~~~-------~li~De~y~~~-~~~--~---------------------------~~~~~~-~~~ 238 (422)
T 3d6k_A 207 ----------MSTAAPDF-------RIVWDNAYALH-TLS--D---------------------------EFPIVH-NVI 238 (422)
T ss_dssp ----------CCCSSTTC-------EEEEECTTTTC-BSS--S---------------------------CCCCCC-CHH
T ss_pred ----------HHhhccCC-------EEEEECCcccc-ccC--C---------------------------CCCCCc-Chh
Confidence 787 8999 99999999742 110 0 000000 110
Q ss_pred hhh--cCCCCeeEEEEcCCCccC--ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH-
Q psy11047 468 LRI--QGLGRAQNFTIVPSSLLR--VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI- 542 (943)
Q Consensus 468 ~~l--~Gie~ADSItiDpHK~L~--vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~- 542 (943)
... .+....+-+..+++|+++ .|-+..+ ..+..+..-.. ......++ ...+..++....+..
T Consensus 239 ~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~-----~~~~l~~~l~~--~~~~~~~~------~~~~~q~a~~~~l~~~ 305 (422)
T 3d6k_A 239 EFAQAAGNPNRFWFMSSTSKITHAGSGVSFFA-----SSKENIEWYAS--HANVRGIG------PNKLNQLAHAQFFGDV 305 (422)
T ss_dssp HHHHHTTCTTCEEEEEESTTTSCTTSSCEEEE-----CCHHHHHHHHH--HHHHHCSC------CCHHHHHHHHHHHCSH
T ss_pred hHhhccCCCCcEEEEcChhhhcCcccceEEEE-----eCHHHHHHHHH--HHHhhcCC------CCHHHHHHHHHHHhCc
Confidence 000 011233567778899844 2221111 00111000000 00000011 112333333333322
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEE
Q psy11047 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI 622 (943)
Q Consensus 543 ~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eI 622 (943)
..+.++++++.+ .++++ ...+.+.+.+.+...+.+++
T Consensus 306 ~~~~~~~~~~~~-------------------~~~~~------------------------~~~l~~~L~~~l~~~~~~~~ 342 (422)
T 3d6k_A 306 AGLKAHMLKHAA-------------------SLAPK------------------------FERVLEILDSRLSEYGVAKW 342 (422)
T ss_dssp HHHHHHHHHHHH-------------------HHHHH------------------------HHHHHHHHHHHHGGGTCEEE
T ss_pred chHHHHHHHHHH-------------------HHHHH------------------------HHHHHHHHHHhcCcCCceEE
Confidence 234445544211 00000 12344455555544555776
Q ss_pred ecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEee-cc-c-----CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 623 PAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP-AS-L-----RIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 623 l~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~-t~-~-----~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
..+...+.+.+++.+.+ ...+.+.+.++|. .+.+ .. . .+..++|+++.. +++++++++++.|+++.+++
T Consensus 343 ~~p~~g~~~~~~~~~~~--~~~~~~~l~~~gV-~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 343 TSPTGGYFISVDVVPGT--ASRVVELAKEAGI-ALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp CCCSBSSCEEEEESTTC--HHHHHHHHHHTTE-ECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred eCCCcceEEEEECCCCC--HHHHHHHHHHCCe-EEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHH
Confidence 66556666777886432 4567777888875 4544 21 2 235789997766 89999999999999887665
Q ss_pred HH
Q psy11047 696 LA 697 (943)
Q Consensus 696 l~ 697 (943)
..
T Consensus 419 ~~ 420 (422)
T 3d6k_A 419 AL 420 (422)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-08 Score=113.34 Aligned_cols=137 Identities=11% Similarity=-0.047 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 232 LEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 232 LE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
...++.+.+++++|.+.+ ..+||+|||+||..|+.+++.. . + ++-+++....-|
T Consensus 86 ~~~~l~~~la~~~~~~~~----------~v~~~~gg~ea~~~a~~~~~~~--~-------~-------~~~vi~~~~~yh 139 (433)
T 1zod_A 86 PVVDLATRLANITPPGLD----------RALLLSTGAESNEAAIRMAKLV--T-------G-------KYEIVGFAQSWH 139 (433)
T ss_dssp HHHHHHHHHHHHSCTTCC----------EEEEESCHHHHHHHHHHHHHHH--H-------T-------CCEEEEETTCCC
T ss_pred HHHHHHHHHHHhCCCCcC----------EEEEeCchHHHHHHHHHHHHHh--h-------C-------CCeEEEECCCcC
Confidence 344566678888876433 6899999999999999887642 1 1 123455555666
Q ss_pred hHHHHHHHHC-----------CccEEEEecCCC------------CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccc
Q psy11047 312 SSVEKAGLIG-----------LVNMRYIESDDK------------LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFL 368 (943)
Q Consensus 312 ySv~KAa~LG-----------~~~v~~Vp~D~~------------grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tG 368 (943)
.+..-+..+. ...++.++++.. +.+|+++|++.|+... ...+.+|++.--.+.+|
T Consensus 140 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~--~~~~~~vi~~p~~~~~G 217 (433)
T 1zod_A 140 GMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS--SGNLAAFIAEPILSSGG 217 (433)
T ss_dssp CSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHC--CSCEEEEEECSEETTTT
T ss_pred CCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcC--CCCeEEEEEccccCCCC
Confidence 5554444221 124666665321 2357999999997531 11244555543334478
Q ss_pred cccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 369 VVDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 369 aIDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+-| +++|.+ +|++||+ ++++|.+|.++
T Consensus 218 ~~~~~~~~l~~l~~--------------------l~~~~~~-------~li~DEv~~~~ 249 (433)
T 1zod_A 218 IIELPDGYMAALKR--------------------KCEARGM-------LLILDEAQTGV 249 (433)
T ss_dssp CEECCTTHHHHHHH--------------------HHHHHTC-------EEEEECTTTTT
T ss_pred cccCCHHHHHHHHH--------------------HHHHhCC-------EEEEeccccCC
Confidence 6544 899999 9999999 99999999865
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-08 Score=114.88 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=47.6
Q ss_pred CCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 626 RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 626 ~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+..+++.|.+.+. .....+.++|.++|. ++.+. +..++|++++..+++++|+++++.|+++.++
T Consensus 384 ~~g~~~~~~~~~~-~~~~~~~~~l~~~Gv-~v~~~---g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 384 GRGLMCAFSLPTT-ADRDELIRQLWQRAV-IVLPA---GADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp EETTEEEEECSSH-HHHHHHHHHHHHTTE-ECEEE---TTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eccEEEEEEECCh-HHHHHHHHHHHHCCe-EEecC---CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566777877532 235678888888775 44442 4579999999999999999999999887654
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=7.4e-08 Score=108.19 Aligned_cols=143 Identities=8% Similarity=-0.112 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
+...++.+||+++++...+ ..+||+|||+||..|+.++|..... +|.. .++-++.....-
T Consensus 87 ~~~~~la~~l~~~~~~~~~----------~v~~~~sGseA~~~al~~~~~~~~~------~G~~----~~~~vi~~~~~y 146 (448)
T 3dod_A 87 VPATQLAETLIDISPKKLT----------RVFYSDSGAEAMEIALKMAFQYWKN------IGKP----EKQKFIAMKNGY 146 (448)
T ss_dssp HHHHHHHHHHHHHSCTTEE----------EEEEESSHHHHHHHHHHHHHHHHHH------TTCT----TCCEEEEEC---
T ss_pred HHHHHHHHHHHHhCCCCCC----------EEEEeCchHHHHHHHHHHHHHHHHh------hCCC----CCCEEEEECCCC
Confidence 4455677889998865433 5899999999999999999864321 1100 023344444445
Q ss_pred chHHHHHHHHCC------------ccEEEEecCCCCCc-----------CHHHHHHHHHHhhccCCCcEEEEEecCC-Cc
Q psy11047 311 HSSVEKAGLIGL------------VNMRYIESDDKLSL-----------RGDKLIEAIERDKKKHLIPFFIFSGLAL-PA 366 (943)
Q Consensus 311 HySv~KAa~LG~------------~~v~~Vp~D~~grm-----------D~daLe~aI~~d~~kG~~P~~VVaTaGT-T~ 366 (943)
|-+..-+..++. ..+..++.+...+. |+++|++.|+.... .+.+|+..--. ..
T Consensus 147 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~---~~a~vi~ep~~~~~ 223 (448)
T 3dod_A 147 HGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHE---EIAALSIESMVQGA 223 (448)
T ss_dssp --------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGG---GEEEEEEESSEEST
T ss_pred CCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCC---CEEEEEEeCcccCC
Confidence 544433332221 13456666554443 58999999973211 24444444333 45
Q ss_pred cccccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 367 FLVVDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 367 tGaIDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.|.+-| +++|.+ +|++||+ ++++|-++.++
T Consensus 224 ~G~~~~~~~~l~~l~~--------------------l~~~~~~-------~lI~DEv~~g~ 257 (448)
T 3dod_A 224 SGMIVMPEGYLAGVRE--------------------LCTTYDV-------LMIVDEVATGF 257 (448)
T ss_dssp TTCEECCTTHHHHHHH--------------------HHHHTTC-------EEEEECTTTTT
T ss_pred CCeecCCHHHHHHHHH--------------------HHHHhCC-------EEEEeccccCC
Confidence 565544 889998 9999999 99999999875
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-08 Score=110.26 Aligned_cols=144 Identities=15% Similarity=-0.047 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
.....++.+||+++++.+.+ ..+||+|||+||..|+.+++...... + .++ ++.++.....
T Consensus 93 ~~~~~~la~~l~~~~~~~~~----------~v~~~~ggseA~~~al~~~~~~~~~~-g--~~~-------~~~vi~~~~~ 152 (459)
T 4a6r_A 93 HPAVVELSSLLAEVTPAGFD----------RVFYTNSGSESVDTMIRMVRRYWDVQ-G--KPE-------KKTLIGRWNG 152 (459)
T ss_dssp CHHHHHHHHHHHHHSCTTCC----------EEEEESSHHHHHHHHHHHHHHHHHHT-T--CTT-------CCEEEEETTC
T ss_pred CHHHHHHHHHHHHhCCCCCC----------EEEEeCchHHHHHHHHHHHHHHHHhc-C--CCC-------CCEEEEECCC
Confidence 34455677889999876433 58999999999999999998753211 0 111 2345555666
Q ss_pred CchHHHHHHHHCC------------ccEEEEecCC-----CCCcC--------HHHHHHHHHHhhccCCCcEEEEEecCC
Q psy11047 310 AHSSVEKAGLIGL------------VNMRYIESDD-----KLSLR--------GDKLIEAIERDKKKHLIPFFIFSGLAL 364 (943)
Q Consensus 310 aHySv~KAa~LG~------------~~v~~Vp~D~-----~grmD--------~daLe~aI~~d~~kG~~P~~VVaTaGT 364 (943)
-|-...-+..++. ..+..++... +. +| +++|++.|..... ..+.+|++.-..
T Consensus 153 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~--~~~~~vi~ep~~ 229 (459)
T 4a6r_A 153 YHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGA--DKVAAFVGEPIQ 229 (459)
T ss_dssp CCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCG--GGEEEEEECSSB
T ss_pred cCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCC--CCEEEEEECCcc
Confidence 6654433333321 1345565322 22 55 7888888875211 124555555444
Q ss_pred Cccccccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 365 PAFLVVDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 365 T~tGaIDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
...|.+-| +++|.+ +|++||+ ++++|-+|.++
T Consensus 230 ~~~G~~~~~~~~l~~l~~--------------------l~~~~~~-------llI~DEv~~g~ 265 (459)
T 4a6r_A 230 GAGGVIVPPATYWPEIER--------------------ICRKYDV-------LLVADEVICGF 265 (459)
T ss_dssp TTTTCBCCCTTHHHHHHH--------------------HHHHTTC-------EEEEECTTTTT
T ss_pred CCCCcccCCHHHHHHHHH--------------------HHHHcCC-------EEEEeccccCC
Confidence 45566665 899999 9999999 99999998876
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.9e-09 Score=116.31 Aligned_cols=135 Identities=10% Similarity=0.030 Sum_probs=89.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|...+...+++..+.+|+.+-++.+.+ ..+||+|+|+++.. +.+ ++ .+| -
T Consensus 94 y~~~~g~~~l~~~ia~~~~~~~~~~~~----------~i~~t~G~~~al~~-l~~----l~------~~g---------d 143 (432)
T 3ei9_A 94 YGAEQGAKPLRAAIAKTFYGGLGIGDD----------DVFVSDGAKCDISR-LQV----MF------GSN---------V 143 (432)
T ss_dssp CCCTTCCHHHHHHHHHHHHTTTTCCGG----------GEEEESCHHHHHHH-HHH----HH------CTT---------C
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCCcc----------eEEECCChHHHHHH-HHH----Hc------CCC---------C
Confidence 333345578888888888865555443 68999999999754 221 11 122 2
Q ss_pred EEEecCCCchHHHHHHH-HCC-----------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc
Q psy11047 303 VAYCSDQAHSSVEKAGL-IGL-----------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~-LG~-----------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI 370 (943)
.|++++-+|.++..++. .|. ..++.++++..+.+..+ |++ . ..+.+|+.+...+.+|.+
T Consensus 144 ~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~----~----~~~~~v~l~~p~NPtG~~ 214 (432)
T 3ei9_A 144 TIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPD-LST----V----GRTDIIFFCSPNNPTGAA 214 (432)
T ss_dssp CEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCC-GGG----C----CCCSEEEEESSCTTTCCC
T ss_pred EEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCC-hhh----C----CCCCEEEEeCCCCCCCCC
Confidence 36778889999888774 553 36788888754333222 221 1 124566666778889987
Q ss_pred cc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 371 DS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 371 Dp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-+ +.+|.+ +|++||+ ++++|.+|+.+
T Consensus 215 ~~~~~l~~l~~--------------------la~~~~~-------~li~Dea~~~~ 243 (432)
T 3ei9_A 215 ATREQLTQLVE--------------------FAKKNGS-------IIVYDSAYAMY 243 (432)
T ss_dssp CCHHHHHHHHH--------------------HHHHHTC-------EEEEECTTGGG
T ss_pred CCHHHHHHHHH--------------------HHHHcCc-------EEEEccchHhh
Confidence 55 666666 8999999 99999999865
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.8e-09 Score=114.86 Aligned_cols=306 Identities=10% Similarity=0.004 Sum_probs=168.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|...+...+++..+.+|+. .|++.. ....+||+|||+++..+ .+ ++ .+| -
T Consensus 107 y~~~~g~~~lr~~ia~~~~--~g~~~~--------~~~i~~t~G~~~al~~~-~~----l~------~~g---------d 156 (449)
T 3qgu_A 107 YGAEQGQGALREAVASTFY--GHAGRA--------ADEIFISDGSKCDIARI-QM----MF------GSK---------P 156 (449)
T ss_dssp STTTTCCHHHHHHHHHHHH--TTTTCC--------GGGEEEESCHHHHHHHH-HH----HH------CSS---------S
T ss_pred CCCCCCcHHHHHHHHHHHH--cCCCCC--------HHHEEEccCHHHHHHHH-HH----Hh------CCC---------C
Confidence 3333445678777777776 454322 13689999999998654 21 11 122 2
Q ss_pred EEEecCCCchHHHHHHH-HCCc---------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc
Q psy11047 303 VAYCSDQAHSSVEKAGL-IGLV---------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS 372 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~-LG~~---------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp 372 (943)
.|++++-+|.+...++. .|.. +++.++.++.+.++.+ ++ +. ..+.+|+.+...+.+|.+-+
T Consensus 157 ~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~----~~~~~v~l~~p~NPtG~~~~ 227 (449)
T 3qgu_A 157 TVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPD-LS----KA----KRTDIIFFCSPNNPTGAAAT 227 (449)
T ss_dssp CEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCC-GG----GC----CCCSEEEEESSCTTTCCCCC
T ss_pred EEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCC-hh----Hc----CCCCEEEEeCCCCCCCCcCC
Confidence 36677889999888875 5542 2888998765433322 11 10 12456666677888998855
Q ss_pred ---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHH
Q psy11047 373 ---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTE 449 (943)
Q Consensus 373 ---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~ 449 (943)
+++|++ +|++||+ ++++|.+|+++ .+.
T Consensus 228 ~~~l~~l~~--------------------l~~~~~~-------~li~Dea~~~~-~~~---------------------- 257 (449)
T 3qgu_A 228 RAQLTELVN--------------------FARKNGS-------ILVYDAAYALY-ISN---------------------- 257 (449)
T ss_dssp HHHHHHHHH--------------------HHHHHTC-------EEEEECTTGGG-CCC----------------------
T ss_pred HHHHHHHHH--------------------HHHHCCc-------EEEEEcchHhh-hcC----------------------
Confidence 667777 9999999 99999999875 220
Q ss_pred HHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccC---cchhhhhcccCccccccCCCCc--ccc-cCccccC
Q psy11047 450 KLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKN---SGALHRTFNVEPLYLRHENSGL--AID-YMHWQIP 523 (943)
Q Consensus 450 kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~---~~~L~~af~~~p~YL~~~~~g~--~~d-~~~~tie 523 (943)
|... .... .+.+....+-+..+++|+++... ...+ .....+....... ... ....+..
T Consensus 258 ---------~~~~-~~~~-~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (449)
T 3qgu_A 258 ---------PDCP-KTIY-EIPGADEVAIETCSFSKYAGFTGVRLGWTV-----VPKALKYANGEPVHADWNRVMTTCFN 321 (449)
T ss_dssp ---------TTSC-SSGG-GSTTGGGTEEEEEECSGGGTCTTCCCEEEE-----CCTTCBCTTSCBHHHHHHHHHHHSCC
T ss_pred ---------CCCC-CCHh-hccCCCCcEEEEecchhhcCCccceeEEEe-----cCHHHHhhhhhhHHHHHHHHhhcccC
Confidence 0000 0010 11122345678889999987322 2111 1111111000000 000 0000000
Q ss_pred CCCCcchHHHHHHHHHHH---HHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCc
Q psy11047 524 LSKRFRALKLWFVIRNFG---IKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPK 600 (943)
Q Consensus 524 ~SRrfrALklW~tLr~~G---~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~ 600 (943)
....+.+++....+. .+.+.+..++
T Consensus 322 ---~~~~~~~~a~~~~l~~~~~~~~~~~~~~------------------------------------------------- 349 (449)
T 3qgu_A 322 ---GASNIVQAGGLACLQPEGLKEMNAMIKF------------------------------------------------- 349 (449)
T ss_dssp ---CCCHHHHHHHHHHTSHHHHHHHHHHHHH-------------------------------------------------
T ss_pred ---CCCHHHHHHHHHHHhhcCHHHHHHHHHH-------------------------------------------------
Confidence 111222333333322 1222222222
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhcc-CcEEEeecc---cCCCcEEEEeecCCC
Q psy11047 601 FQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK-GRLHCVPAS---LRIQGLGRAQNFTRT 676 (943)
Q Consensus 601 ~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~-G~~~~s~t~---~~g~~~lR~v~~~~t 676 (943)
..++++++.+.|++. ++++..+.....+.+.+.+.+ ..++.++|.++ |. ++.+.. ..+.+++|+++. .
T Consensus 350 --~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~gI-~v~pg~~f~~~~~~~iRis~~--~ 421 (449)
T 3qgu_A 350 --YKENAQILKTTFTEM-GFSVYGGDDAPYIWVGFPGKP--SWDVFAEILERCNI-VTTPGSGYGPAGEGFVRASAF--G 421 (449)
T ss_dssp --HHHHHHHHHHHHHHT-TCCEEESSSSSEEEEECTTSC--HHHHHHHHHHHHCE-ECEEGGGGCGGGTTEEEEECC--S
T ss_pred --HHHHHHHHHHHHHHC-CCeeeCCCCeeEEEEECCCCC--HHHHHHHHHHHCCE-EEecchHhCCCCCCeEEEEec--C
Confidence 234566777777766 788776656677777776332 46777777765 64 555432 234679999643 3
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy11047 677 TNDDITRDWNEIRNTAT 693 (943)
Q Consensus 677 t~edId~ll~~I~~~~~ 693 (943)
++++|+++++.|+++..
T Consensus 422 ~~e~i~~~l~~l~~~~~ 438 (449)
T 3qgu_A 422 SRENILEAVRRFKEAYG 438 (449)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 89999999998887654
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-09 Score=123.40 Aligned_cols=122 Identities=7% Similarity=-0.034 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 232 LEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 232 LE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
.-..+.+|+++++|.+ ..++++|||+|+..++. .+ .+| -.|++++.+|
T Consensus 134 ~~~~l~~~la~~~g~~------------~~i~~~sGt~al~~~l~-----~~------~~G---------d~Vi~~~~~y 181 (464)
T 1ibj_A 134 TRDALESLLAKLDKAD------------RAFCFTSGMAALSAVTH-----LI------KNG---------EEIVAGDDVY 181 (464)
T ss_dssp HHHHHHHHHHHHHTCS------------EEEEESSHHHHHHHHHT-----TS------CTT---------CEEEEESSCC
T ss_pred HHHHHHHHHHHHhCCC------------eEEEECCHHHHHHHHHH-----Hh------CCC---------CEEEEECCCc
Confidence 3445778999999875 35788999998754432 11 122 2466788889
Q ss_pred hHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccc
Q psy11047 312 SSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGF 387 (943)
Q Consensus 312 ySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~ 387 (943)
.+...+. ...+..++.++.+ |+++|+++|+.+ +.+|+.+..++.+|.+.|+++|++
T Consensus 182 ~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~i~~~------tk~v~l~~p~NptG~v~~l~~i~~--------- 241 (464)
T 1ibj_A 182 GGSDRLLSQVVPRSGVVVKRVNTT-----KLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKISE--------- 241 (464)
T ss_dssp HHHHHHHHHTSGGGTCEEEEECTT-----SHHHHHHHCCSS------EEEEEECSSCTTTCCCCCHHHHHH---------
T ss_pred hhHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHHhccC------ceEEEEeCCCCCCCEeecHHHHHH---------
Confidence 8887653 2233477888774 799999988643 678888889999999999999999
Q ss_pred ccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 388 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 388 ~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.+|+..
T Consensus 242 -----------la~~~gi-------~livDea~~~g 259 (464)
T 1ibj_A 242 -----------MAHAQGA-------LVLVDNSIMSP 259 (464)
T ss_dssp -----------HHHTTTC-------EEEEECTTTCT
T ss_pred -----------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999754
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-08 Score=113.77 Aligned_cols=163 Identities=9% Similarity=-0.058 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhc-cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCC--cEEEcCChHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINC-LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPG--GGVLQTTASESTLICLLAGRTE 281 (943)
Q Consensus 205 ~silgd~L~~alN~-n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~--~GvfTsGGTeANL~AL~aAR~~ 281 (943)
+.+. +.+...+.. ....|.......++...+.+|+....+.+-. .. ..++|+|||+|+..++.....
T Consensus 70 ~~v~-~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~--------~~~~~i~~t~G~t~al~~~~~~~~~- 139 (420)
T 4f4e_A 70 RAVR-DAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIA--------AGRVVTAQALGGTGALKIGADFLRT- 139 (420)
T ss_dssp HHHH-HHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH--------TTCEEEEEEEHHHHHHHHHHHHHHH-
T ss_pred HHHH-HHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccc--------cCceEEEECCccHHHHHHHHHHHHH-
Confidence 4444 444444444 2233444444566666666666544332101 12 579999999999887543211
Q ss_pred HHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEec--CCCCCcCHHHHHHHHHHhhccCCCcEEEE
Q psy11047 282 AIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIES--DDKLSLRGDKLIEAIERDKKKHLIPFFIF 359 (943)
Q Consensus 282 ~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~kG~~P~~VV 359 (943)
+ .+| -.|++++-+|.+...++...+.+++.+|. ++++.+|+++|++.|+... ..+.+++
T Consensus 140 -~------~~g---------d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~ 200 (420)
T 4f4e_A 140 -L------NPK---------AKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYE---PGTIVVL 200 (420)
T ss_dssp -H------CTT---------CCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCC---TTCEEEE
T ss_pred -h------CCC---------CEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCC---CCCEEEE
Confidence 1 122 23667788999888877654558888988 4578999999999997431 1257788
Q ss_pred EecCCCccccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 360 SGLALPAFLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 360 aTaGTT~tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+...+.+|.+ +.+++|++ +|++||+ ++++|.+|+++
T Consensus 201 i~~p~NPtG~~~~~~~l~~i~~--------------------~~~~~~~-------~li~De~y~~~ 240 (420)
T 4f4e_A 201 HACCHNPTGVDLNDAQWAQVVE--------------------VVKARRL-------VPFLDIAYQGF 240 (420)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEEESCTTS
T ss_pred eCCCCCCCCCCCCHHHHHHHHH--------------------HHHHCCc-------EEEEccccccc
Confidence 88888899988 44667777 9999999 99999999876
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6e-09 Score=114.53 Aligned_cols=167 Identities=9% Similarity=-0.043 Sum_probs=106.7
Q ss_pred HHHHHHHHHH-hc-cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE--cCChHHHHHHHHHHHHHHH
Q psy11047 207 LLGDMLSDAI-NC-LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL--QTTASESTLICLLAGRTEA 282 (943)
Q Consensus 207 ilgd~L~~al-N~-n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf--TsGGTeANL~AL~aAR~~~ 282 (943)
.+.+.+...+ +. ....|...+...++...+.+|+....|.+-. ....+| |+|||+|+..++..++.
T Consensus 52 ~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~--------~~~v~~~~t~gg~~a~~~~~~~~~~-- 121 (412)
T 1ajs_A 52 VVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQ--------EKRVGGVQSLGGTGALRIGAEFLAR-- 121 (412)
T ss_dssp HHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH--------TTCEEEEEEEHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccC--------CCcEEEEECCCcHHHHHHHHHHHHH--
Confidence 3444455544 21 2223433444566666666666443332101 125788 99999999888654331
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCcc-EEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEE
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVN-MRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIF 359 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~-v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VV 359 (943)
+ .+|.. . .+-.|++..-+|.+...++...+.+ ++.++.+ +++.+|+++|++++... +..+.+++
T Consensus 122 ~------~~g~~---~-~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~ 188 (412)
T 1ajs_A 122 W------YNGTN---N-KDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENA---PEFSIFVL 188 (412)
T ss_dssp H------SSSSS---C-CCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEE
T ss_pred h------CcCcC---C-CCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhC---CCCcEEEE
Confidence 1 12200 0 0023566677888888877543447 8888873 67889999999999753 11256777
Q ss_pred EecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 360 SGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 360 aTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+...+.+|.+-| +++|.+ +|++||+ ++++|.+|.++
T Consensus 189 ~~~p~nptG~~~~~~~l~~l~~--------------------~~~~~~~-------~li~De~y~~~ 228 (412)
T 1ajs_A 189 HACAHNPTGTDPTPEQWKQIAS--------------------VMKRRFL-------FPFFDSAYQGF 228 (412)
T ss_dssp ESSSCTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEEESCTTT
T ss_pred ECCCCCCCCCCCCHHHHHHHHH--------------------HHHHCCC-------EEEEEcccccc
Confidence 7888888998844 667787 9999999 99999999876
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.1e-09 Score=113.59 Aligned_cols=157 Identities=10% Similarity=0.032 Sum_probs=104.4
Q ss_pred HHHHHHHHHhc-cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE--cCChHHHHHHHHHHHHHHHHH
Q psy11047 208 LGDMLSDAINC-LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL--QTTASESTLICLLAGRTEAIR 284 (943)
Q Consensus 208 lgd~L~~alN~-n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf--TsGGTeANL~AL~aAR~~~l~ 284 (943)
+.+.+...+.. ....|.......++...+.+|+... +.+.+ ..+| |+|||+|+..++.+.+..
T Consensus 49 v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~----------~v~~~~~~g~~~a~~~~~~~~~~~--- 114 (394)
T 2ay1_A 49 VHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD-GLKSE----------TTATLATVGGTGALRQALELARMA--- 114 (394)
T ss_dssp HHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG-GCCGG----------GEEEEEEEHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCC-CCCcc----------cEEEEecCCchhHHHHHHHHHHhc---
Confidence 44444444432 2223333334466666666665321 22332 5677 999999998887765421
Q ss_pred hhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEe
Q psy11047 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSG 361 (943)
Q Consensus 285 ~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaT 361 (943)
.+| + .|++..-+|.+...++. .|. +++.++.+ +++.+|+++|+++|+... ..+.+++.+
T Consensus 115 -----~~g--------d-~vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~~~ 176 (394)
T 2ay1_A 115 -----NPD--------L-RVFVSDPTWPNHVSIMNFMGL-PVQTYRYFDAETRGVDFEGMKADLAAAK---KGDMVLLHG 176 (394)
T ss_dssp -----CTT--------C-CEEEEESCCHHHHHHHHHHTC-CEEEEECEETTTTEECHHHHHHHHHTCC---TTCEEEEES
T ss_pred -----CCC--------C-EEEEcCCCChhHHHHHHHcCC-ceEEEecccccCCccCHHHHHHHHHhCC---CCCEEEEeC
Confidence 122 1 25566778888888775 454 77888875 678899999999997531 124566667
Q ss_pred cCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 362 LALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 362 aGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
...+.+|.+-| +++|.+ +|++||+ ++++|.+|+++
T Consensus 177 ~~~nptG~~~~~~~l~~i~~--------------------~~~~~~~-------~li~De~~~~~ 214 (394)
T 2ay1_A 177 CCHNPTGANLTLDQWAEIAS--------------------ILEKTGA-------LPLIDLAYQGF 214 (394)
T ss_dssp SSCTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEEECCTTS
T ss_pred CCCCCCCCCCCHHHHHHHHH--------------------HHHHCCC-------EEEEecCcccc
Confidence 88888998865 556777 9999999 99999999876
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.2e-08 Score=110.98 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=57.5
Q ss_pred HHHHHHHHHhCCCCeEEecCCCccEEEEEecC------CChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHH
Q psy11047 606 LAQKFEALVLGDPRFEIPAARHLGMVVIRLLG------ENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTND 679 (943)
Q Consensus 606 LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g------~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~e 679 (943)
+.+.+.+.+...|.+... +....++.|.+.. .......+.+.+.++|. ++.+... ...++|+..+...+++
T Consensus 357 l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv-~v~~~~~-~~~~iRi~~~~~~t~e 433 (453)
T 4ffc_A 357 VTSRLSALAEEVDIIGEV-RGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGV-LILTCGT-FGNVIRLLPPLVIGDD 433 (453)
T ss_dssp HHHHHHHHHHHCSSEEEE-EEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTE-ECCEECT-TSCEEEECCCTTCCHH
T ss_pred HHHHHHHHHhhCCCeEEE-EeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCC-EEecCCC-CCCEEEEECCCCCCHH
Confidence 444555555556654433 2334566666642 22345678888888885 4444322 2368999888899999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11047 680 DITRDWNEIRNTATEIL 696 (943)
Q Consensus 680 dId~ll~~I~~~~~~ll 696 (943)
+|+++++.|+++..++.
T Consensus 434 ~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 434 LLDEGITALSDIIRAKA 450 (453)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998876653
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=4.4e-11 Score=131.09 Aligned_cols=136 Identities=7% Similarity=-0.075 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
..+++..+.+|+++.+|++.. ....++|+|||+|+..++.+... +| -.|++..
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~--------~~~v~~~~g~~~a~~~~~~~~~~----------~g---------d~vl~~~ 120 (392)
T 3b1d_A 68 SDELLQAVLDWEKSEHQYSFD--------KEDIVFVEGVVPAISIAIQAFTK----------EG---------EAVLINS 120 (392)
Confidence 678888888999888885432 13578999999999888765421 12 1356677
Q ss_pred CCchHHHHHHHHCCccEEEEecC-C--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESD-D--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIV 382 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D-~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~ 382 (943)
-+|.+...++...+.+++.++.+ + ++.+|+++|++.++.. .+.+|+.+...+.+|.+-| +++|.+
T Consensus 121 p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~---- 191 (392)
T 3b1d_A 121 PVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVEN-----DVKLYLLCNPHNPGGRVWEREVLEQIGH---- 191 (392)
Confidence 78888877774333467777774 3 3469999999998732 1445555667777888755 778888
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.+|+++
T Consensus 192 ----------------~~~~~~~-------~li~De~~~~~ 209 (392)
T 3b1d_A 192 ----------------LCQKHHV-------ILVSDEIHQDL 209 (392)
Confidence 9999999 99999999876
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-08 Score=116.12 Aligned_cols=130 Identities=5% Similarity=-0.010 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE---cCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 228 ACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL---QTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 228 aateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf---TsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
...++|. .+|+++|.+. .++ ++|||+||..++.+. + .|| -.|
T Consensus 74 ~~~~Le~----~lA~l~g~e~------------alv~p~~~sGt~Ai~~al~al----l------~pG---------D~V 118 (427)
T 3i16_A 74 GRDSLDA----VYARVFNTES------------ALVRPHFVNGTHALGAALFGN----L------RPG---------NTM 118 (427)
T ss_dssp HHHHHHH----HHHHHHTCSE------------EEEETTCCSHHHHHHHHHHHH----C------CTT---------CEE
T ss_pred HHHHHHH----HHHHHhCCcc------------eEEeCCCccHHHHHHHHHHHH----h------CCC---------CEE
Confidence 3556664 6799999853 355 899999998776642 1 122 235
Q ss_pred EecC-CCchHHHH-----------HHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEec----CCCccc
Q psy11047 305 YCSD-QAHSSVEK-----------AGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGL----ALPAFL 368 (943)
Q Consensus 305 ~~S~-~aHySv~K-----------Aa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTa----GTT~tG 368 (943)
++++ ..|..... .+...+.+++.++.+++|.+|+++|+++|++.. .+.+|+.+. .++.+|
T Consensus 119 l~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~----~tklV~i~~s~~~p~nptg 194 (427)
T 3i16_A 119 LSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDE----SITLVHIQRSTGYGWRRAL 194 (427)
T ss_dssp EESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCT----TEEEEEEECSCCSSSSCCC
T ss_pred EEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCC----CCEEEEEEcCCCCCCCCcc
Confidence 6665 56654442 222224478899998899999999999998310 256777766 678889
Q ss_pred ccccHHHhhhhccccccccccccccCchHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 369 VVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 369 aIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+.|+++|++ +|++ +|+ +++||.+|+.+
T Consensus 195 ~i~dl~~i~~--------------------la~~~~~g~-------~livD~a~~~~ 224 (427)
T 3i16_A 195 LIEDIKSIVD--------------------CVKNIRKDI-------ICFVDNCYGEF 224 (427)
T ss_dssp CHHHHHHHHH--------------------HHHHHCTTS-------EEEEECTTTTT
T ss_pred cHHHHHHHHH--------------------HHHHhCCCC-------EEEEECCCccc
Confidence 9999999999 9999 999 99999999765
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-08 Score=113.68 Aligned_cols=152 Identities=9% Similarity=-0.167 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh-hc--------------ccCCCch
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK-YQ--------------QSHPELE 294 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~-~~--------------~~~pGl~ 294 (943)
.+++..+.+.|+++++... ...+||+||||||..|+.+||.+...+ .. ...||-
T Consensus 109 ~~l~~~la~~l~~~~~~~~----------~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~- 177 (472)
T 1ohv_A 109 ENFVEKLRESLLSVAPKGM----------SQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGC- 177 (472)
T ss_dssp TTHHHHHHHTGGGGCCTTC----------CEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTS-
T ss_pred HHHHHHHHHHHHHhCCCCc----------CEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccC-
Confidence 4666666666677663222 257999999999999999998543100 00 000110
Q ss_pred hhhcCCceEEEecCCCchHHHHHHHHCCc-----------cEEEEecC-CCC-------------CcCHHHHHHHHHHhh
Q psy11047 295 HAEINSRLVAYCSDQAHSSVEKAGLIGLV-----------NMRYIESD-DKL-------------SLRGDKLIEAIERDK 349 (943)
Q Consensus 295 ~~~i~~~~vV~~S~~aHySv~KAa~LG~~-----------~v~~Vp~D-~~g-------------rmD~daLe~aI~~d~ 349 (943)
..+-+|.....-|-+..-++.++.. .+..++.. ... ..|+++|+++|+...
T Consensus 178 ----~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 253 (472)
T 1ohv_A 178 ----PDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYR 253 (472)
T ss_dssp ----CCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcC
Confidence 0134555555667655555433221 11122321 111 236889999997632
Q ss_pred ccCCCcEEEEEecCCCccccccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 350 KKHLIPFFIFSGLALPAFLVVDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 350 ~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
..+..+.+|+.....+++|.+-| +++|.+ +|++||+ ++|+|.+|.|+
T Consensus 254 ~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~--------------------l~~~~g~-------lli~DEv~~g~ 304 (472)
T 1ohv_A 254 KKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRD--------------------ISRKHGC-------AFLVDEVQTGG 304 (472)
T ss_dssp HTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHH--------------------HHHHTTC-------EEEEECTTTTT
T ss_pred CCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHH--------------------HHHHhCC-------EEEEeCcccCC
Confidence 21113566666555566898766 899999 9999999 99999999865
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-08 Score=111.23 Aligned_cols=148 Identities=9% Similarity=-0.079 Sum_probs=102.0
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE--cCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcC
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL--QTTASESTLICLLAGRTEAIRKYQQSHPELEHAEIN 299 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf--TsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~ 299 (943)
.|.......++-..+.+|+.+..|.+-. ....++ |+|||+|+..++.+.+... .+|
T Consensus 66 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~--------~~~i~~v~t~G~~~al~~~~~~l~~~~-------~~g------- 123 (401)
T 7aat_A 66 EYLPIAGLADFTRASAELALGENSEAFK--------SGRYVTVQGISGTGSLRVGANFLQRFF-------KFS------- 123 (401)
T ss_dssp CCCCTTCCHHHHHHHHHHHHCTTCHHHH--------TTCEEEEEEEHHHHHHHHHHHHHHHHC-------TTC-------
T ss_pred CCCCCCCCHHHHHHHHHHhcCCCccccc--------cCceEEEecCcchHHHHHHHHHHHHhc-------cCC-------
Confidence 3433334455666666666655454211 124556 9999999988876543210 122
Q ss_pred CceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc---ccHH
Q psy11047 300 SRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV---DSYC 374 (943)
Q Consensus 300 ~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI---DpL~ 374 (943)
-.|++++-+|.+...++...+.+++.+|.+ +++.+|++++++.++.. . ..+.+++.+...+.+|.+ ++++
T Consensus 124 --d~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-~--~~~~~v~i~~p~NPtG~~~~~~~l~ 198 (401)
T 7aat_A 124 --RDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKI-P--EKSIILLHACAHNPTGVDPRQEQWK 198 (401)
T ss_dssp --CEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTS-C--TTCEEEEESSSCTTTCCCCCHHHHH
T ss_pred --CEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhC-C--CCcEEEEeCCCCCCCCCCCCHHHHH
Confidence 246677778888877775434478888874 47899999999988762 1 136778888888889966 4577
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++ +|++||+ ++++|.+|+.+
T Consensus 199 ~i~~--------------------~~~~~~~-------~li~Deay~~~ 220 (401)
T 7aat_A 199 ELAS--------------------VVKKRNL-------LAYFDMAYQGF 220 (401)
T ss_dssp HHHH--------------------HHHHTTC-------EEEEEESCTTT
T ss_pred HHHH--------------------HHHhCCc-------EEEEccccccc
Confidence 8888 9999999 99999999876
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-07 Score=107.77 Aligned_cols=145 Identities=10% Similarity=-0.103 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
.+...++.+||+++++.+.+ ..+||+||||||..|+.++|..... +|-+ ..+-+|.....
T Consensus 96 ~~~~~~la~~l~~~~~~~~~----------~v~~~~sGseA~~~Aik~a~~~~~~------~g~~----~~~~vi~~~~~ 155 (476)
T 3i5t_A 96 TSPAARLAEKIATLTPGDLN----------RIFFTTGGSTAVDSALRFSEFYNNV------LGRP----QKKRIIVRYDG 155 (476)
T ss_dssp CHHHHHHHHHHHTTSSTTCC----------EEEEESSHHHHHHHHHHHHHHHHHH------TTCT----TCCEEEEETTC
T ss_pred CHHHHHHHHHHHhcCCCCcC----------EEEEeCchHHHHHHHHHHHHHHHHh------cCCC----CCCEEEEEcCC
Confidence 44555677899998865432 5899999999999999999875422 1210 12345556666
Q ss_pred CchHHHHHHHHCC------------ccEEEEecCCC--C-CcC--------HHHHHHHHHHhhccCCCcEEEEEecCCCc
Q psy11047 310 AHSSVEKAGLIGL------------VNMRYIESDDK--L-SLR--------GDKLIEAIERDKKKHLIPFFIFSGLALPA 366 (943)
Q Consensus 310 aHySv~KAa~LG~------------~~v~~Vp~D~~--g-rmD--------~daLe~aI~~d~~kG~~P~~VVaTaGTT~ 366 (943)
-|-+..-++.++. ..+..++.... . ..+ .++|++.|+.... ..+.+|++.-....
T Consensus 156 yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~--~~~aavi~ep~~~~ 233 (476)
T 3i5t_A 156 YHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGP--DTIAAFLAEPILAS 233 (476)
T ss_dssp CCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCG--GGEEEEEECSSBTT
T ss_pred cCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCC--CCEEEEEECCccCC
Confidence 6765544443322 13455553221 1 122 7888888875211 12455555544444
Q ss_pred cccccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 367 FLVVDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 367 tGaIDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.|.+-| |++|.+ +|++||+ ++++|-++.|+
T Consensus 234 ~G~~~~~~~~L~~l~~--------------------lc~~~gi-------llI~DEv~~g~ 267 (476)
T 3i5t_A 234 GGVIIPPAGYHARFKA--------------------ICEKHDI-------LYISDEVVTGF 267 (476)
T ss_dssp TTSBCCCTTHHHHHHH--------------------HHHHTTC-------EEEEECTTTTT
T ss_pred CCcccCCHHHHHHHHH--------------------HHHHcCC-------EEEEEecccCC
Confidence 565444 889998 9999999 99999999876
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-07 Score=105.87 Aligned_cols=140 Identities=9% Similarity=-0.036 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
+...++.++|+++++.+.. ...+||+||||||..|+.+||.+. | .+.++.....-
T Consensus 104 ~~~~~la~~l~~~~~~~~~---------~~v~~~~sGseA~~~Alk~a~~~~---------g-------~~~ii~~~~~y 158 (451)
T 3oks_A 104 EGYVAVCEQLNRLTPVRGD---------KRSALFNSGSEAVENAVKIARSHT---------H-------KPAVVAFDHAY 158 (451)
T ss_dssp HHHHHHHHHHHHHSSCCSS---------EEEEEESSHHHHHHHHHHHHHHHH---------C-------CCEEEEETTCC
T ss_pred HHHHHHHHHHHHhCCcCCC---------CEEEEeCcHHHHHHHHHHHHHHhc---------C-------CCeEEEEcCCc
Confidence 4455677888998864321 258999999999999999987531 1 22345555666
Q ss_pred chHHHHHHHHCC-------------ccEEEEecCCCC-------------CcCHHHHHHHHHHhhccCCCcEEEEEecCC
Q psy11047 311 HSSVEKAGLIGL-------------VNMRYIESDDKL-------------SLRGDKLIEAIERDKKKHLIPFFIFSGLAL 364 (943)
Q Consensus 311 HySv~KAa~LG~-------------~~v~~Vp~D~~g-------------rmD~daLe~aI~~d~~kG~~P~~VVaTaGT 364 (943)
|-...-++.++. ..+..+|..... .-+.+.+++.|+..... ..+.+|+..-..
T Consensus 159 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~-~~~aavi~ep~~ 237 (451)
T 3oks_A 159 HGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGA-DNLAAVVIEPIQ 237 (451)
T ss_dssp CCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCG-GGEEEEEECSSB
T ss_pred CCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCC-CCEEEEEEcCCc
Confidence 654444443321 156777764211 12355555666543211 124455554444
Q ss_pred Cccccccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 365 PAFLVVDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 365 T~tGaIDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
...|.+-| +++|.+ +|++||+ ++++|-+|.++
T Consensus 238 ~~gG~~~~~~~~l~~l~~--------------------l~~~~g~-------~lI~DEv~~g~ 273 (451)
T 3oks_A 238 GEGGFIVPADGFLPTLLD--------------------WCRKNDV-------VFIADEVQTGF 273 (451)
T ss_dssp TTTTCBCCCTTHHHHHHH--------------------HHHHTTC-------EEEEECTTTTT
T ss_pred CCCCccCCCHHHHHHHHH--------------------HHHHcCC-------EEEEEecccCC
Confidence 44566655 899999 9999999 99999999876
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-08 Score=112.74 Aligned_cols=132 Identities=8% Similarity=-0.059 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
.....++.++++++++ +. ...+||+|||+||..|+..||... + ++-+|.....
T Consensus 91 ~~~~~~la~~l~~~~~-~~----------~~v~~~~ggsea~~~al~~a~~~~---------~-------~~~vi~~~~~ 143 (427)
T 3fq8_A 91 CALENVLAEMVNDAVP-SI----------EMVRFVNSGTEACMAVLRIMRAYT---------G-------RDKIIKFEGC 143 (427)
T ss_dssp CHHHHHHHHHHHHHST-TC----------SEEEEESSHHHHHHHHHHHHHHHH---------C-------CCEEEEEETC
T ss_pred CHHHHHHHHHHHHhCC-CC----------CEEEEeCCHHHHHHHHHHHHHHhh---------C-------CCEEEEECCC
Confidence 3455567788899887 22 268999999999999998887431 1 1223444444
Q ss_pred CchHHHHHHHHCC-------------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc
Q psy11047 310 AHSSVEKAGLIGL-------------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 310 aHySv~KAa~LG~-------------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI 370 (943)
-|.+..-+..++. ..+..++.+ |+++|++.|++.. ..+.+|++.-....+|.+
T Consensus 144 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~---~~~~~vi~~p~~~~~G~~ 215 (427)
T 3fq8_A 144 YHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAENP---GEIAGVILEPIVGNSGFI 215 (427)
T ss_dssp CCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHST---TTEEEEEECSSBCTTSCB
T ss_pred cCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhCC---CCEEEEEEcCCcCCCCCc
Confidence 4432222211110 124445543 7999999998632 125667766666667888
Q ss_pred cc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 371 DS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 371 Dp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-| +++|.+ +|++||+ ++++|.+|+++
T Consensus 216 ~~~~~~l~~l~~--------------------l~~~~~~-------~li~DEv~~g~ 245 (427)
T 3fq8_A 216 VPDAGFLEGLRE--------------------ITLEHDA-------LLVFDEVITGF 245 (427)
T ss_dssp CCCTTHHHHHHH--------------------HHHHTTC-------EEEEECTTTBT
T ss_pred CCCHHHHHHHHH--------------------HHHHcCC-------EEEEecccccc
Confidence 88 999999 9999999 99999999866
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-08 Score=123.35 Aligned_cols=127 Identities=6% Similarity=0.050 Sum_probs=92.8
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE 315 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~ 315 (943)
+.+.+|+++|.+.. -++++|+|.||+.++.+.- .|| -.|+++..+|.|+.
T Consensus 200 aE~~lA~~fGa~~a-----------~~v~nGts~An~~ai~al~----------~pG---------D~VLv~r~~H~S~~ 249 (715)
T 3n75_A 200 AEQYIARVFNADRS-----------YMVTNGTSTANKIVGMYSA----------PAG---------STILIDRNCHKSLT 249 (715)
T ss_dssp HHHHHHHHHTCSEE-----------EEESSHHHHHHHHHHHHHC----------CTT---------CEEEEESSCCHHHH
T ss_pred HHHHHHHHhCCCCc-----------eEECcHHHHHHHHHHHHhC----------CCC---------CEEEECCCccHHHH
Confidence 33467899998653 3556666899977766421 122 35788999999999
Q ss_pred HHHHHCCccEEEEecCCC-C----Cc-----CHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccc
Q psy11047 316 KAGLIGLVNMRYIESDDK-L----SL-----RGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGL 385 (943)
Q Consensus 316 KAa~LG~~~v~~Vp~D~~-g----rm-----D~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~ 385 (943)
.++.+.+..++.++++.+ + .+ |+++|+++|++.... ..|.+++.|.+ |.+|.+-|+++|++
T Consensus 250 ~~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~-k~p~~vivt~p-n~~G~v~dl~~I~e------- 320 (715)
T 3n75_A 250 HLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITNS-TYDGLLYNTDFIKK------- 320 (715)
T ss_dssp HHHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTC-CSCSEEEEESS-CTTSEEECHHHHHH-------
T ss_pred HHHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCc-cCceEEEEECC-CCCCccCCHHHHHH-------
Confidence 998776667888876422 2 24 899999999875321 12557788888 88999999999999
Q ss_pred ccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 386 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 386 ~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+.+ +++||.||++.
T Consensus 321 -------------la~~~---------~livDEAH~~~ 336 (715)
T 3n75_A 321 -------------TLDVK---------SIHFDSAWVPY 336 (715)
T ss_dssp -------------HCCCS---------EEEEECTTCTT
T ss_pred -------------HhCcC---------cEEEccccccc
Confidence 88643 47999999976
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-08 Score=112.38 Aligned_cols=143 Identities=11% Similarity=-0.065 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
....++.++|+++++.+.+ ..+||+||||||..|+.++|.+...+ ..+| .+.+|.....-
T Consensus 118 ~~~~~L~e~la~~~~~~~~----------~v~~~~sGseA~~~Alk~a~~~~~~~---g~~g-------~~~ii~~~~~y 177 (457)
T 3tfu_A 118 EPAARLAKLLVDITPAGLD----------TVFFSDSGSVSVEVAAKMALQYWRGR---GLPG-------KRRLMTWRGGY 177 (457)
T ss_dssp HHHHHHHHHHHHHSSTTEE----------EEEEESSHHHHHHHHHHHHHHHHHHT---TCTT-------CCEEEEETTCC
T ss_pred HHHHHHHHHHHHhCCCCcC----------EEEEeCcHHHHHHHHHHHHHHHHHhc---CCCC-------CceEEEEcCCc
Confidence 3344567788899875443 58999999999999999998754221 0111 22345555555
Q ss_pred chHHHHHHHHC-------------CccEEEEec--CCCCCcCHHHHHHHHHHhhccCCCcEEEEEec-CCCccccccc--
Q psy11047 311 HSSVEKAGLIG-------------LVNMRYIES--DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGL-ALPAFLVVDS-- 372 (943)
Q Consensus 311 HySv~KAa~LG-------------~~~v~~Vp~--D~~grmD~daLe~aI~~d~~kG~~P~~VVaTa-GTT~tGaIDp-- 372 (943)
|-+..-++.++ ...+..++. +..+..|+++|+++|++... .+.+|+..- -...+|.+-|
T Consensus 178 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~---~~aavi~ep~~~~~~G~~~~~~ 254 (457)
T 3tfu_A 178 HGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAG---ELAAVVVEPVVQGAGGMRFHDP 254 (457)
T ss_dssp CCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGG---GEEEEEECSSEECTTTCEECCT
T ss_pred CCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCC---CEEEEEEeCCCcCCCCcccCCH
Confidence 54433333221 112333443 23334689999999985321 245555554 4456676654
Q ss_pred --HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 --YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 --L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++|.+ +|++||+ ++++|.++.|+
T Consensus 255 ~~l~~l~~--------------------l~~~~gi-------llI~DEv~~g~ 280 (457)
T 3tfu_A 255 RYLHDLRD--------------------ICRRYEV-------LLIFDEIATGF 280 (457)
T ss_dssp HHHHHHHH--------------------HHHHHTC-------EEEEECTTTTT
T ss_pred HHHHHHHH--------------------HHHHcCC-------EEEEEcCccCC
Confidence 889998 9999999 99999999876
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=7e-09 Score=114.18 Aligned_cols=161 Identities=9% Similarity=-0.027 Sum_probs=105.5
Q ss_pred HHHHHHH-HHhc-cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE--cCChHHHHHHHHHHHHHHHH
Q psy11047 208 LGDMLSD-AINC-LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL--QTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 208 lgd~L~~-alN~-n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf--TsGGTeANL~AL~aAR~~~l 283 (943)
+.+.+.. .+.. ....|...+...++...+.+|+.+..|.+-. ....++ |+|||+|+..++...+. +
T Consensus 52 v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~--------~~~i~~~~t~g~~~a~~~~~~~~~~--~ 121 (412)
T 1yaa_A 52 VKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQ--------EDRVISVQSLSGTGALHISAKFFSK--F 121 (412)
T ss_dssp HHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH--------TTCEEEEEEEHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCC--------cceEEEEeccchHhHHHHHHHHHHH--h
Confidence 4444444 4432 1223333344566777777776554443211 125788 99999999877544331 1
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEec-C-CCCCcCHHHHHHHHHHhhccCCCcEEEEEe
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIES-D-DKLSLRGDKLIEAIERDKKKHLIPFFIFSG 361 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~-D-~~grmD~daLe~aI~~d~~kG~~P~~VVaT 361 (943)
.+| -.|+++.-+|.+...++...+.+++.++. + +++.+|+++|+++|+... ....+++.+
T Consensus 122 ------~~g---------d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~~~ 183 (412)
T 1yaa_A 122 ------FPD---------KLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAP---EGSIFVLHS 183 (412)
T ss_dssp ------CTT---------CCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSC---TTCEEEEEC
T ss_pred ------CCC---------CEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCC---CCCEEEEeC
Confidence 122 12566677888888877543457888887 4 378899999999997531 113555557
Q ss_pred cCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 362 LALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 362 aGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
...+.+|.+-+ +++|.+ +|++||+ ++++|.+|+++
T Consensus 184 ~p~nPtG~~~~~~~l~~l~~--------------------~~~~~~~-------~li~De~~~~~ 221 (412)
T 1yaa_A 184 CAHNPTGLDPTSEQWVQIVD--------------------AIASKNH-------IALFDTAYQGF 221 (412)
T ss_dssp SSCTTTCCCCCHHHHHHHHH--------------------HHHHTTC-------EEEEEESCTTT
T ss_pred CCCCCCCCCCCHHHHHHHHH--------------------HHHHCCC-------EEEEecccccc
Confidence 88888998855 566777 9999999 99999999766
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.93 E-value=9.3e-08 Score=106.31 Aligned_cols=128 Identities=8% Similarity=0.025 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
.+..++++++++ +. ...+||+||||||..|+.++|... + ++-++.....-|.+
T Consensus 98 ~~l~~~la~~~~-~~----------~~v~~~~sGsea~~~ai~~a~~~~---------~-------~~~vi~~~~~yhg~ 150 (434)
T 3l44_A 98 VKFAKMLKEAMP-AL----------DKVRFVNSGTEAVMTTIRVARAYT---------G-------RTKIMKFAGCYHGH 150 (434)
T ss_dssp HHHHHHHHHHCT-TC----------SEEEEESSHHHHHHHHHHHHHHHH---------C-------CCEEEEETTCCCCS
T ss_pred HHHHHHHHHhCC-CC----------CEEEEeCchHHHHHHHHHHHHHhh---------C-------CCEEEEEcCccCCC
Confidence 345567778775 22 258999999999999999887531 1 12344444444543
Q ss_pred HHHHHHHCCc-------------------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc--
Q psy11047 314 VEKAGLIGLV-------------------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS-- 372 (943)
Q Consensus 314 v~KAa~LG~~-------------------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp-- 372 (943)
...+..++.. .+..+|.+ |+++|+++|+.... .+.+|++.-....+|.+-|
T Consensus 151 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~ 222 (434)
T 3l44_A 151 SDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEALDKWGH---EVAAILVEPIVGNFGIVEPKP 222 (434)
T ss_dssp SGGGGBC-------CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCT
T ss_pred cHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHHHHhCCC---CEEEEEEcCCCCCCCCccCCH
Confidence 3322211111 33344432 79999999986321 2455666555555677776
Q ss_pred --HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 --YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 --L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++|.+ +|++||+ ++++|.+|.++
T Consensus 223 ~~l~~l~~--------------------l~~~~~i-------llI~DEv~~g~ 248 (434)
T 3l44_A 223 GFLEKVNE--------------------LVHEAGA-------LVIYDEVITAF 248 (434)
T ss_dssp THHHHHHH--------------------HHHTTTC-------EEEEECTTTTT
T ss_pred HHHHHHHH--------------------HHHHcCC-------EEEEeccccce
Confidence 999999 9999999 99999999876
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-07 Score=104.90 Aligned_cols=131 Identities=9% Similarity=0.003 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
....++.++++++++ .. ...+||+||||||..|+.+||... + ++.+|.....-
T Consensus 93 ~~~~~la~~l~~~~~-~~----------~~v~~~~sGsea~~~al~~a~~~~---------~-------~~~ii~~~~~y 145 (429)
T 4e77_A 93 EMEVKMAQLVTDLVP-TM----------DMVRMVNSGTEATMSAIRLARGYT---------G-------RDKIIKFEGCY 145 (429)
T ss_dssp HHHHHHHHHHHHHST-TC----------SEEEEESSHHHHHHHHHHHHHHHH---------C-------CCEEEEETTCC
T ss_pred HHHHHHHHHHHhhCC-CC----------CEEEEeCcHHHHHHHHHHHHHHhh---------C-------CCEEEEEcCcc
Confidence 344456677888886 22 258999999999999999887431 1 22345555556
Q ss_pred chHHHHHHH-HCCc------------------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc
Q psy11047 311 HSSVEKAGL-IGLV------------------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD 371 (943)
Q Consensus 311 HySv~KAa~-LG~~------------------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID 371 (943)
|-+...++. .|.. .+..++.+ |+++|+++|++.. ..+.+|++.-.....|.+.
T Consensus 146 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~---~~~~~vi~ep~~~~~g~~~ 217 (429)
T 4e77_A 146 HGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVRQAFEQYP---QEVACIIVEPVAGNMNCIP 217 (429)
T ss_dssp CC------------------CCCTTSCGGGGTTEEEECTT-----CHHHHHHHHHHST---TTEEEEEECSSBCTTSCBC
T ss_pred CCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCC-----CHHHHHHHHHhcC---CCEEEEEECCccCCCCCcC
Confidence 655443221 1110 22333322 7999999998632 1245555554445567777
Q ss_pred c----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 372 S----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 372 p----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
| +++|.+ +|++||+ ++++|.+|+++
T Consensus 218 ~~~~~l~~l~~--------------------l~~~~~~-------lli~DEv~~g~ 246 (429)
T 4e77_A 218 PLPEFLPGLRA--------------------LCDEFGA-------LLIIDEVMTGF 246 (429)
T ss_dssp CCTTHHHHHHH--------------------HHHHHTC-------EEEEEETTTBT
T ss_pred CCHHHHHHHHH--------------------HHHHcCC-------EEEEeccccCc
Confidence 7 999999 9999999 99999999876
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.6e-08 Score=111.26 Aligned_cols=127 Identities=7% Similarity=-0.064 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE---cCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL---QTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf---TsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
..++|+ .+|+++|.+. .++ ++|||+||..++.+. + .|| -.|+
T Consensus 61 ~~~Le~----~lA~l~g~e~------------alv~p~~~sGt~Ai~~al~al----l------~~G---------D~Vl 105 (409)
T 3jzl_A 61 RDTLER----VYATVFKTEA------------ALVRPQIISGTHAISTVLFGI----L------RPD---------DELL 105 (409)
T ss_dssp HHHHHH----HHHHHHTCSE------------EEEETTSCSHHHHHHHHHHHH----C------CTT---------CEEE
T ss_pred HHHHHH----HHHHHhCCCc------------EEEECCCccHHHHHHHHHHHh----c------CCC---------CEEE
Confidence 455654 5789999753 355 899999998877642 1 122 2356
Q ss_pred ecC-CCchHHHHHH----------HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEec----CCCccccc
Q psy11047 306 CSD-QAHSSVEKAG----------LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGL----ALPAFLVV 370 (943)
Q Consensus 306 ~S~-~aHySv~KAa----------~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTa----GTT~tGaI 370 (943)
+++ ..|....... ...+..++.++.+++|.+|+++|+++|+.+ +.+|+... .++.+|.+
T Consensus 106 ~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~------tklV~i~~s~g~p~nptg~v 179 (409)
T 3jzl_A 106 YITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPK------TKMIGIQRSRGYADRPSFTI 179 (409)
T ss_dssp ECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTT------EEEEEEECSCTTSSSCCCCH
T ss_pred EeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCC------CeEEEEECCCCCCCCCcCcc
Confidence 665 6666655422 222347889999889999999999998653 56777776 77889999
Q ss_pred ccHHHhhhhccccccccccccccCchHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 371 DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 371 DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.|+++|++ +|++ ||+ ++|+|.+|+.+
T Consensus 180 ~~l~~I~~--------------------la~~~~~~~-------~livD~a~~~~ 207 (409)
T 3jzl_A 180 EKIKEMIV--------------------FVKNINPEV-------IVFVDNCYGEF 207 (409)
T ss_dssp HHHHHHHH--------------------HHHHHCTTC-------EEEEECTTCTT
T ss_pred ccHHHHHH--------------------HHHhhCCCC-------EEEEeCCcccc
Confidence 99999999 9999 999 99999999865
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-08 Score=109.17 Aligned_cols=163 Identities=9% Similarity=-0.045 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhc-cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE--cCChHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINC-LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL--QTTASESTLICLLAGRTE 281 (943)
Q Consensus 205 ~silgd~L~~alN~-n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf--TsGGTeANL~AL~aAR~~ 281 (943)
+.+. +.+...+.. ....|...+...++...+.+|+.+.-+.+-. ....++ |+|||+|+..++.+.+..
T Consensus 47 ~~v~-~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~--------~~~v~~~~~~g~~~a~~~~~~~~~~~ 117 (396)
T 2q7w_A 47 TSVK-KAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALIN--------DKRARTAQTPGGTGALRVAADFLAKN 117 (396)
T ss_dssp HHHH-HHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH--------TTCEEEEEESHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccc--------cccEEEEecccchhhHHHHHHHHHHh
Confidence 4443 444444332 2223433444566666666665432221100 024666 999999998887654321
Q ss_pred HHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEE
Q psy11047 282 AIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIF 359 (943)
Q Consensus 282 ~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VV 359 (943)
.+| -.|++.+-+|.+...++...+.+++.++.+ +++.+|+++|+++++... ..+.+++
T Consensus 118 --------~~g---------d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~ 177 (396)
T 2q7w_A 118 --------TSV---------KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ---AGDVVLF 177 (396)
T ss_dssp --------SCC---------CEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC---TTCEEEE
T ss_pred --------CCC---------CEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCC---CCCEEEE
Confidence 122 235666778888888775444578888885 578899999999997531 1256677
Q ss_pred EecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 360 SGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 360 aTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+...+.+|.+-| +++|.+ +|++||+ ++++|.+|+++
T Consensus 178 ~~~p~nptG~~~~~~~l~~l~~--------------------~~~~~~~-------~li~De~~~~~ 217 (396)
T 2q7w_A 178 HGCCHNPTGIDPTLEQWQTLAQ--------------------LSVEKGW-------LPLFDFAYQGF 217 (396)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEEESCTTS
T ss_pred eCCCCCCCCCCCCHHHHHHHHH--------------------HHHHCCC-------EEEEecccccc
Confidence 7888888898855 556777 9999999 99999999876
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-07 Score=105.10 Aligned_cols=117 Identities=11% Similarity=-0.049 Sum_probs=86.9
Q ss_pred cEEE--cCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH----HCCccEEEEec-CC
Q psy11047 260 GGVL--QTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL----IGLVNMRYIES-DD 332 (943)
Q Consensus 260 ~Gvf--TsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~----LG~~~v~~Vp~-D~ 332 (943)
..++ |+|||+|+..++...+. + .+| -.|++++-+|.+....+. ..+.+++.+|. ++
T Consensus 119 ~i~~~~t~ggt~al~l~~~~~~~--~------~~g---------d~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 181 (448)
T 3meb_A 119 RIASCQSLSGTGSLHIGFEFLHL--W------MPK---------AEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRK 181 (448)
T ss_dssp CEEEEEESHHHHHHHHHHHHHHH--H------CTT---------CCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCT
T ss_pred cEEEEECCcHHHHHHHHHHHHHH--h------CCC---------CEEEECCCCCHhHHHHHHhhHHhCCCeEEEEecccc
Confidence 5788 99999998765432211 1 122 236778888888877766 54558888988 65
Q ss_pred C--CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCC
Q psy11047 333 K--LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKF 407 (943)
Q Consensus 333 ~--grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~ 407 (943)
+ +.+|+++|+++|+.... .+.+++.+...+.+|.+-+ +++|++ +|++||+
T Consensus 182 ~~~~~~d~e~l~~~l~~~~~---~~~~v~~~~p~NPtG~~~~~~~l~~i~~--------------------l~~~~~~-- 236 (448)
T 3meb_A 182 DGELEIDFSNTKKDIQSAPE---KSIFLFHACAHNPSGIDFTEAQWKELLP--------------------IMKEKKH-- 236 (448)
T ss_dssp TSCSSBCHHHHHHHHHHSCT---TCEEEEESSSCTTTCCCCCHHHHHHHHH--------------------HHHHHTC--
T ss_pred ccCCCcCHHHHHHHHHhCCC---CcEEEEeCCCCCCCCcCCCHHHHHHHHH--------------------HHHHCCC--
Confidence 4 89999999999986311 2567777778888998865 555777 9999999
Q ss_pred CccchhhhHHhhhcCC
Q psy11047 408 QSVRLAQKFEALVLGD 423 (943)
Q Consensus 408 ~~l~lwLHVDAA~GG~ 423 (943)
++++|.+|+++
T Consensus 237 -----~li~Deay~~~ 247 (448)
T 3meb_A 237 -----IAFFDSAYQGF 247 (448)
T ss_dssp -----EEEEEESCTTT
T ss_pred -----EEEEecccccc
Confidence 99999999876
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=9.8e-08 Score=102.31 Aligned_cols=116 Identities=8% Similarity=-0.048 Sum_probs=86.1
Q ss_pred HHHHHHHHHhC---CCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 235 ITMNWLGKMIG---LPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 235 ~Vi~wLa~LlG---~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
.+.+.+++++| .+.+ ..++|+|||+++..++.+. | -.|++. -+|
T Consensus 60 ~lr~~la~~~~~~~~~~~----------~v~~~~G~~~al~~~~~~~-------------g---------d~Vl~~-p~y 106 (335)
T 1uu1_A 60 ELIEKILSYLDTDFLSKN----------NVSVGNGADEIIYVMMLMF-------------D---------RSVFFP-PTY 106 (335)
T ss_dssp HHHHHHHHHHTCSSCCGG----------GEEEESSHHHHHHHHHHHS-------------S---------EEEECS-SSC
T ss_pred HHHHHHHHHcCCCCCCHH----------HEEEcCChHHHHHHHHHHh-------------C---------CcEEEC-CCc
Confidence 34556677777 5433 6899999999997776542 1 136677 888
Q ss_pred hHHHHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccc
Q psy11047 312 SSVEKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 312 ySv~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i 390 (943)
.+...++. .|. +++.+|.++++.+|+++| . .+.+|+.+...+.+|.+-|.+++.+
T Consensus 107 ~~~~~~~~~~g~-~~~~v~~~~~~~~d~~~l-----~------~~~~v~l~~p~nptG~~~~~~~l~~------------ 162 (335)
T 1uu1_A 107 SCYRIFAKAVGA-KFLEVPLTKDLRIPEVNV-----G------EGDVVFIPNPNNPTGHVFEREEIER------------ 162 (335)
T ss_dssp HHHHHHHHHHTC-EEEECCCCTTSCCCCCCC-----C------TTEEEEEESSCTTTCCCCCHHHHHH------------
T ss_pred HHHHHHHHHcCC-eEEEeccCCCCCCCHHHc-----C------CCCEEEEeCCCCCCCCCCCHHHHHH------------
Confidence 88887774 454 788888887778888876 1 2567776777888999999999998
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++..| ++++|.+|+.+
T Consensus 163 --------l~~~~~--------~li~De~~~~~ 179 (335)
T 1uu1_A 163 --------ILKTGA--------FVALDEAYYEF 179 (335)
T ss_dssp --------HHHTTC--------EEEEECTTHHH
T ss_pred --------HHHhCC--------EEEEECcchhh
Confidence 888764 59999999754
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-07 Score=103.94 Aligned_cols=132 Identities=11% Similarity=-0.012 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
..+..++.++|+++++ .. ...+||+|||+||..|+.+||... + ++-+|++...
T Consensus 95 ~~~~~~l~~~la~~~~-~~----------~~v~~~~sgseA~~~al~~ar~~~-~---------------~~~vi~~~~~ 147 (434)
T 2epj_A 95 GEAEVLLAEKILGYVK-RG----------GMIRFVNSGTEATMTAIRLARGYT-G---------------RDLILKFDGC 147 (434)
T ss_dssp CHHHHHHHHHHHHHHC-TT----------CEEEEESSHHHHHHHHHHHHHHHH-C---------------CCEEEEEETC
T ss_pred CHHHHHHHHHHHHhCC-CC----------CEEEEeCCHHHHHHHHHHHHHHhh-C---------------CCeEEEEcCC
Confidence 3445556778888884 11 257999999999999999987421 0 1223444434
Q ss_pred CchHHHHHH-------------H-HCC-----ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc
Q psy11047 310 AHSSVEKAG-------------L-IGL-----VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 310 aHySv~KAa-------------~-LG~-----~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI 370 (943)
-|....-+. . .|. ..+..++. .|+++|++.|++.. ..+.+|++.-....+|.+
T Consensus 148 yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~ 219 (434)
T 2epj_A 148 YHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-----NDVEALERVFAEYG---DRIAGVIVEPVIANAGVI 219 (434)
T ss_dssp CCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-----TCHHHHHHHHHHHG---GGEEEEEECSSBCSSSCB
T ss_pred cCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-----CCHHHHHHHHHhCC---CCEEEEEEeCCcCCCCcc
Confidence 443221111 0 121 13556664 27999999997531 125566665544557887
Q ss_pred cc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 371 DS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 371 Dp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-| +++|.+ +|++||+ ++++|.+|+|+
T Consensus 220 ~~~~~~l~~l~~--------------------l~~~~g~-------~lI~DEv~~g~ 249 (434)
T 2epj_A 220 PPRREFLAALQR--------------------LSRESGA-------LLILDEVVTGF 249 (434)
T ss_dssp CCCHHHHHHHHH--------------------HHHHHTC-------EEEEEETTTTT
T ss_pred CCCHHHHHHHHH--------------------HHHHcCC-------EEEEEcchhce
Confidence 76 999999 9999999 99999999876
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=7.1e-08 Score=107.41 Aligned_cols=127 Identities=10% Similarity=-0.067 Sum_probs=82.9
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
+..++++++++ .. ...+||+|||+||..|+.++|... + ++-++.....-|.+.
T Consensus 97 ~l~~~la~~~~-~~----------~~v~~~~~Gsea~~~ai~~a~~~~---------~-------~~~vi~~~~~yhg~~ 149 (429)
T 3k28_A 97 KLAKLVIERVP-SI----------EIVRMVNSGTEATMSALRLARGYT---------G-------RNKILKFIGCYHGHG 149 (429)
T ss_dssp HHHHHHHHHST-TC----------SEEEEESSHHHHHHHHHHHHHHHH---------T-------CCEEEEEETCCCCSC
T ss_pred HHHHHHHHhCC-CC----------CEEEEeCChHHHHHHHHHHHHHhh---------C-------CCEEEEECCCcCCCc
Confidence 34556777775 22 258999999999999999887531 1 123444455555433
Q ss_pred HHHHHHCCc-------------------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---
Q psy11047 315 EKAGLIGLV-------------------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS--- 372 (943)
Q Consensus 315 ~KAa~LG~~-------------------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp--- 372 (943)
..++..+.. .+..+|.+ |+++|+++|+.... .+.+|++.-.....|.+-|
T Consensus 150 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~ 221 (429)
T 3k28_A 150 DSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN-----DLESVKYAFEQFGD---DIACVIVEPVAGNMGVVPPQPG 221 (429)
T ss_dssp GGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCTT
T ss_pred HHHHHhcCCcccccCCCCcCCCCCcccCceeecCCC-----CHHHHHHHHHhCCC---CEEEEEEcCCCCCCCcccCCHH
Confidence 333221111 23333332 79999999985321 2455666555555777877
Q ss_pred -HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 -YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 -L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++|.+ +|++||+ ++++|.+|.++
T Consensus 222 ~l~~l~~--------------------l~~~~~~-------~li~DEv~~g~ 246 (429)
T 3k28_A 222 FLEGLRE--------------------VTEQNGA-------LLIFDEVMTGF 246 (429)
T ss_dssp HHHHHHH--------------------HHHHHTC-------EEEEECTTTTT
T ss_pred HHHHHHH--------------------HHHHcCC-------EEEEecccccc
Confidence 999999 9999999 99999999765
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.7e-08 Score=105.42 Aligned_cols=108 Identities=7% Similarity=-0.120 Sum_probs=72.3
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCcc-EEEEecCCCCCcCH
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVN-MRYIESDDKLSLRG 338 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~-v~~Vp~D~~grmD~ 338 (943)
..++|+|+|+++..++. .+ .+| -.|++.+-+|.+...++...+.. ++.+|.++++.++.
T Consensus 97 ~v~~~~G~~~al~~~~~-----~~------~~g---------d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 156 (400)
T 3asa_A 97 EIFISDGAKVDLFRLLS-----FF------GPN---------QTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFP 156 (400)
T ss_dssp GEEEESCHHHHHHHHHH-----HH------CSS---------CEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCC
T ss_pred HEEEccChHHHHHHHHH-----Hc------CCC---------CEEEECCCCcHHHHHHHHHcCCcceEecccchhcCccc
Confidence 68999999999865321 11 122 23566677888888777533335 88898875443332
Q ss_pred HHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhh
Q psy11047 339 DKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQK 415 (943)
Q Consensus 339 daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLH 415 (943)
+ +++ + ..+.+|+.+...+.+|.+-| +++|++ +|+++|+ +++
T Consensus 157 ~-l~~-~-------~~~~~v~l~~p~nptG~~~~~~~l~~l~~--------------------~~~~~~~-------~li 200 (400)
T 3asa_A 157 E-FPE-D-------THIDILCLCSPNNPTGTVLNKDQLRAIVH--------------------YAIEHEI-------LIL 200 (400)
T ss_dssp C-CCT-T-------CCCSEEEEESSCTTTCCCCCHHHHHHHHH--------------------HHHHTTC-------EEE
T ss_pred C-hhh-c-------cCccEEEEeCCCCCCCCcCCHHHHHHHHH--------------------HHHHcCC-------EEE
Confidence 1 211 0 12556666677888898876 556677 8999999 999
Q ss_pred HHhhhcCC
Q psy11047 416 FEALVLGD 423 (943)
Q Consensus 416 VDAA~GG~ 423 (943)
+|.+|+++
T Consensus 201 ~De~~~~~ 208 (400)
T 3asa_A 201 FDAAYSTF 208 (400)
T ss_dssp EECTTGGG
T ss_pred EEchhhhh
Confidence 99999865
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.6e-07 Score=101.60 Aligned_cols=133 Identities=13% Similarity=0.034 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
..+++..+.+|++++++ .. ...+||+|||+||..|+.+||... + ++-+|++..
T Consensus 95 ~~~~~~~la~~l~~~~~-~~----------~~v~~~~gg~eA~~~al~~ar~~~-~---------------~~~vi~~~~ 147 (453)
T 2cy8_A 95 SHPLEVRWAERIVAAFP-SI----------RKLRFTGSGTETTLLALRVARAFT-G---------------RRMILRFEG 147 (453)
T ss_dssp SCHHHHHHHHHHHHHCT-TC----------SEEEEESCHHHHHHHHHHHHHHHH-C---------------CCEEEEECC
T ss_pred CCHHHHHHHHHHHhhCC-CC----------CEEEEeCCHHHHHHHHHHHHHHhh-C---------------CCEEEEEcC
Confidence 45788889999999985 22 258999999999999999987421 0 122344443
Q ss_pred CCchHHHHHHH-----------HCC-----ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc
Q psy11047 309 QAHSSVEKAGL-----------IGL-----VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS 372 (943)
Q Consensus 309 ~aHySv~KAa~-----------LG~-----~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp 372 (943)
.-|....-+.. .|. ..+..++. .|+++|+++|+.... .+.+|+++-..+.+|.+-|
T Consensus 148 ~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~---~~~~vi~ep~~~~tG~~~~ 219 (453)
T 2cy8_A 148 HYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHGS---DIAAFIAEPVGSHFGVTPV 219 (453)
T ss_dssp ----------------------------CGGGEEEECT-----TCHHHHHHHHHHHGG---GEEEEEECSSEHHHHTEEC
T ss_pred CcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcCC---CEEEEEECCCCCCCCCcCC
Confidence 44422211111 121 13444443 389999999985311 2556665544455787766
Q ss_pred ----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 ----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 ----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++|.+ +|++||+ ++++|.+|+++
T Consensus 220 ~~~~l~~l~~--------------------l~~~~g~-------~lI~DEv~~g~ 247 (453)
T 2cy8_A 220 SDSFLREGAE--------------------LARQYGA-------LFILDEVISGF 247 (453)
T ss_dssp CHHHHHHHHH--------------------HHHHTTC-------EEEEECTTTTT
T ss_pred CHHHHHHHHH--------------------HHHHcCC-------EEEEecCcccc
Confidence 889998 9999999 99999999865
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.6e-08 Score=109.78 Aligned_cols=123 Identities=11% Similarity=-0.017 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
..+|..+.+++++++|.++. ...++|+|||+|+..++.+. +| + .|+++.-
T Consensus 57 ~~~~~~~~~~~a~~~g~~~~---------~~~~~~~ggt~a~~~~~~~~------------~g--------d-~Vl~~~~ 106 (374)
T 2aeu_A 57 SYFAEKVNEYGLKHLGGDEN---------DKCVGFNRTSSAILATILAL------------KP--------K-KVIHYLP 106 (374)
T ss_dssp HHHHHHHHHHHHHHHTCCTT---------EEEEEESSHHHHHHHHHHHH------------CC--------S-EEEEECS
T ss_pred hHHHHHHHHHHHHHhCCCCc---------ceEEEEcChHHHHHHHHHhC------------CC--------C-EEEEecC
Confidence 45667788888999998421 14699999999998887642 12 1 2445555
Q ss_pred ---CchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEE-EEEecCCCccc-ccccHHHhhhhccccc
Q psy11047 310 ---AHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFF-IFSGLALPAFL-VVDSYCCLGTAMIVKG 384 (943)
Q Consensus 310 ---aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~-VVaTaGTT~tG-aIDpL~eIa~~~~~~d 384 (943)
.|+++.+++...+..++.+ +|+++|+++ +. .+.+ |+.+..++.+| ...|+++|.+
T Consensus 107 ~y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~~------~~~~~v~~~~p~nptG~~~~~l~~i~~------ 166 (374)
T 2aeu_A 107 ELPGHPSIERSCKIVNAKYFES-------DKVGEILNK-ID------KDTLVIITGSTMDLKVIELENFKKVIN------ 166 (374)
T ss_dssp SSSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-CC------TTEEEEEECBCTTSCBCCHHHHHHHHH------
T ss_pred CCCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-CC------CccEEEEEccCCCCCCCCcccHHHHHH------
Confidence 5777666554433456655 378888776 21 2566 66666677788 8889999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|++++..
T Consensus 167 --------------l~~~~~~-------~li~De~~~~~ 184 (374)
T 2aeu_A 167 --------------TAKNKEA-------IVFVDDASGAR 184 (374)
T ss_dssp --------------HHHHHTC-------CEEEECTTHHH
T ss_pred --------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999998744
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.77 E-value=3e-07 Score=104.49 Aligned_cols=128 Identities=7% Similarity=-0.040 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE---cCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL---QTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf---TsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
..++| +.+|+++|.+. .++ ++|||+||..++.+. + .|| -.|+
T Consensus 76 ~~~Le----~~lA~l~g~e~------------alv~p~~~sGt~A~~~al~al----l------~pG---------D~Vl 120 (427)
T 3hvy_A 76 RDSLD----RVYANIFNTES------------AFVRPHFVNGTHAIGAALFGN----L------RPN---------DTMM 120 (427)
T ss_dssp HHHHH----HHHHHHHTCSE------------EEEETTCCSHHHHHHHHHHHT----C------CTT---------CEEE
T ss_pred HHHHH----HHHHHHhCCCc------------eEEeCCCCcHHHHHHHHHHHh----c------CCC---------CEEE
Confidence 45565 45788999753 356 899999998776542 1 133 2355
Q ss_pred ecC-CCchHHH-----------HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEec----CCCcccc
Q psy11047 306 CSD-QAHSSVE-----------KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGL----ALPAFLV 369 (943)
Q Consensus 306 ~S~-~aHySv~-----------KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTa----GTT~tGa 369 (943)
+++ ..|.... ..+...+.+++.++. +++.+|+++|+++|++.. .|.+|+.+. .++.+|.
T Consensus 121 ~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~~----~tklV~i~~s~gyp~nptg~ 195 (427)
T 3hvy_A 121 SICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKDD----SIKLIHIQRSTGYGWRKSLR 195 (427)
T ss_dssp ECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHCT----TEEEEEEESSCCSSSSCCCC
T ss_pred EeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCCC----CCEEEEEECCCCCCCCcccc
Confidence 555 4554333 222222347788888 789999999999998411 266777776 6788899
Q ss_pred cccHHHhhhhccccccccccccccCchHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 370 VDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 370 IDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.|+++|++ +|++ +|+ +++||.||+.+
T Consensus 196 v~dl~~i~~--------------------ia~~~~~g~-------~livD~a~~~~ 224 (427)
T 3hvy_A 196 IAEIAEIIK--------------------SIREVNENV-------IVFVDNCYGEF 224 (427)
T ss_dssp HHHHHHHHH--------------------HHHHHCSSS-------EEEEECTTCTT
T ss_pred HHHHHHHHH--------------------HHHHhCCCC-------EEEEECCcccc
Confidence 999999999 9999 899 99999999765
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-07 Score=107.94 Aligned_cols=163 Identities=2% Similarity=-0.104 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHhccCcccc-CChhHHHHHHHHHHHHHHHhC--CCccccccCcCCCCcEEEcCChHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWA-SSPACTELEIITMNWLGKMIG--LPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRT 280 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~-~SPaateLE~~Vi~wLa~LlG--~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~ 280 (943)
++.++..+...+... .|. .+....+++..+.+++++..| .+... ....++|+|||+|+..++.+...
T Consensus 117 ~~~~v~a~~~~~~~~---~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-------~~~i~~t~G~t~al~~~~~~l~~ 186 (533)
T 3f6t_A 117 RDKVVAEWVNGAVAN---NYPVPDRCLVNTEKIINYFLQELSYKDANLAE-------QTDLFPTEGGTAAIVYAFHSLAE 186 (533)
T ss_dssp HHHHHHHHHHHHHTC---SCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGG-------GEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhC---CCCCCcccHHHHHHHHHHHHHHhcCCCCCCCC-------cceEEEECCHHHHHHHHHHHhhh
Confidence 466676666655532 232 334567889999999977733 22110 02589999999999877764211
Q ss_pred HHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC----CCCCcCHHHHHHHHHHhhccCCCcE
Q psy11047 281 EAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD----DKLSLRGDKLIEAIERDKKKHLIPF 356 (943)
Q Consensus 281 ~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D----~~grmD~daLe~aI~~d~~kG~~P~ 356 (943)
+.+ ..+ .-.|+++.-+|.+...++.+.+..++.++++ +++.+|+++|++++..+ +.
T Consensus 187 ~~l-----~~~---------gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~------~k 246 (533)
T 3f6t_A 187 NHL-----LKK---------GDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPS------IK 246 (533)
T ss_dssp TTS-----SCT---------TCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTT------EE
T ss_pred hhc-----cCC---------cCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCC------Ce
Confidence 100 012 2357788999999887775433477777764 56899999999988643 56
Q ss_pred EEEEecCCCcccccccHH---HhhhhccccccccccccccCchHHHHH-HcCCCCCccchhhhHHhhhcCC
Q psy11047 357 FIFSGLALPAFLVVDSYC---CLGTAMIVKGLGFYKMKLQTNFPNFIL-SYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 357 ~VVaTaGTT~tGaIDpL~---eIa~~~~~~d~~~~~i~L~RrfR~iar-~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+.+..++.+|.+-|.+ +|++ +|+ +||+ ++++|.+|+++
T Consensus 247 ~v~l~~p~NPtG~~~~~~~l~~l~~--------------------la~~~~~~-------~li~De~y~~~ 290 (533)
T 3f6t_A 247 ALIVVNPTNPTSKEFDTNALNAIKQ--------------------AVEKNPKL-------MIISDEVYGAF 290 (533)
T ss_dssp EEEEESSCTTTCBCCCHHHHHHHHH--------------------HHHHCTTC-------EEEEECTTGGG
T ss_pred EEEEeCCCCCCccccCHHHHHHHHH--------------------HHHhCCCC-------EEEEcCCcccc
Confidence 777777778899986655 6666 888 6899 99999999865
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-07 Score=108.09 Aligned_cols=129 Identities=7% Similarity=-0.082 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC-CCch
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD-QAHS 312 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~-~aHy 312 (943)
..+.+++++++|.+... .-++++|||+||..++.+.. .+| + .|++++ ..|.
T Consensus 68 ~~l~~~la~~~g~~~~~---------~~i~~~sGt~Ai~~al~al~----------~~G--------d-~Vl~~~~~~y~ 119 (431)
T 3ht4_A 68 DTLEKVYADVFGAEAGL---------VRPQIISGTHAISTALFGIL----------RPG--------D-ELLYITGKPYD 119 (431)
T ss_dssp HHHHHHHHHHTTCSEEC---------CBTTSCSHHHHHHHHHHTTC----------CTT--------C-EEEECSSSCCT
T ss_pred HHHHHHHHHHhCCCccc---------ccceeeCHHHHHHHHHHHhC----------CCC--------C-EEEEeCCCCch
Confidence 34566889999987541 11224588999988875321 122 2 355555 7788
Q ss_pred HHHHHHHH----------CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEec----CCCcccccccHHHhhh
Q psy11047 313 SVEKAGLI----------GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGL----ALPAFLVVDSYCCLGT 378 (943)
Q Consensus 313 Sv~KAa~L----------G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTa----GTT~tGaIDpL~eIa~ 378 (943)
+...++.+ .+..++.++.+.+|.+|+++|+++|+++ +.+|+.+. .+..+|.+.++++|++
T Consensus 120 ~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~------tk~V~i~~sp~np~~~~~~~~~l~~i~~ 193 (431)
T 3ht4_A 120 TLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSN------TKMIGIQRSKGYATRPSFTISQIKEMIA 193 (431)
T ss_dssp THHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCTT------EEEEEEECSCTTSSSCCCCHHHHHHHHH
T ss_pred hHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCCC------CeEEEEECCCCCCCCCcCCHHHHHHHHH
Confidence 77766532 2347889999889999999999998753 66777765 6777889999999999
Q ss_pred hccccccccccccccCchHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++ +|+ ++++|.+|+.+
T Consensus 194 --------------------la~~~~~~~-------~livDea~~~~ 213 (431)
T 3ht4_A 194 --------------------FVKEIKPDV-------VVFVDNCYGEF 213 (431)
T ss_dssp --------------------HHHHHCTTC-------EEEEECTTCTT
T ss_pred --------------------HHHhhCCCC-------EEEEeCCChhh
Confidence 9999 999 99999999877
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.6e-06 Score=94.55 Aligned_cols=131 Identities=13% Similarity=0.014 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
..+..++.++++++++ .. ...+||+|||+||..|+.+||... + ++-+|+....
T Consensus 91 ~~~~~~l~~~l~~~~~-~~----------~~v~~~~~g~ea~~~al~~ar~~~-~---------------~~~vi~~~~~ 143 (424)
T 2e7u_A 91 SPLEVALAKKVKRAYP-FV----------DLVRFVNSGTEATMSALRLARGYT-G---------------RPYIVKFRGN 143 (424)
T ss_dssp CHHHHHHHHHHHHHCT-TC----------CEEEEESSHHHHHHHHHHHHHHHH-C---------------CCEEEEETTC
T ss_pred CHHHHHHHHHHHHhCC-CC----------CEEEEeCCHHHHHHHHHHHHHHhh-C---------------CCEEEEECCC
Confidence 3455566778888875 22 257999999999999999887531 0 1224444444
Q ss_pred CchHHHHHHH--------------HCC-----ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc
Q psy11047 310 AHSSVEKAGL--------------IGL-----VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 310 aHySv~KAa~--------------LG~-----~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI 370 (943)
-|....-+.. .|. ..+..+|. .|+++|++.|+.... .+.+|+++--..++|.+
T Consensus 144 yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~ 215 (424)
T 2e7u_A 144 YHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRRGE---EIAAIIFEPVVGNAGVL 215 (424)
T ss_dssp CCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHGG---GEEEEEECSSBCTTSCB
T ss_pred cCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-----CCHHHHHHHHHhCCC---CEEEEEEeCCCCCCCCc
Confidence 4532221111 111 13455553 379999999975311 24555555444447877
Q ss_pred cc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 371 DS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 371 Dp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-| +++|.+ + ++||+ ++.+|.+|+++
T Consensus 216 ~~~~~~l~~l~~--------------------l-~~~g~-------~lI~DEv~~g~ 244 (424)
T 2e7u_A 216 VPTEDFLKALHE--------------------A-KAYGV-------LLIADEVMTGF 244 (424)
T ss_dssp CCCHHHHHHHHH--------------------G-GGGTC-------EEEEECTTTTT
T ss_pred CCCHHHHHHHHH--------------------H-HHcCC-------EEEEecCcccc
Confidence 66 888888 9 99999 99999999876
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.54 E-value=4e-06 Score=92.31 Aligned_cols=148 Identities=9% Similarity=-0.083 Sum_probs=98.1
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcE--EEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcC
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGG--VLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEIN 299 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~G--vfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~ 299 (943)
.|...+...++...+.+|+. |.....+. .... ..|.|||+|+..+..+.+.. ..+
T Consensus 74 ~y~~~~g~~~lr~~ia~~~~---~~~~~~~~-----~~~i~~~~~~~g~ga~~~~~~~~~~~-------~~~-------- 130 (409)
T 4eu1_A 74 DYAPVTGIASFVEEAQKLCF---GPTCAALR-----DGRIASCQTLGGTGALRIGGDLLNRF-------VAN-------- 130 (409)
T ss_dssp CCCCTTCCHHHHHHHHHHHH---CSSCHHHH-----TTCEEEEEESHHHHHHHHHHHHGGGT-------SSS--------
T ss_pred cCCCCCCcHHHHHHHHHHHc---CCCchhhc-----cCceeeeecccchHHHHHHHHHHHHh-------cCC--------
Confidence 34334445677777766662 44310000 0123 45999999987665443210 011
Q ss_pred CceEEEecCCCchHHHHHHHHCCccEEEEec--CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HH
Q psy11047 300 SRLVAYCSDQAHSSVEKAGLIGLVNMRYIES--DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YC 374 (943)
Q Consensus 300 ~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~ 374 (943)
.-.|++.+-+|.+...++...+.+++.++. ++++.+|+++|+++++.... .+.+++.+...+.+|.+-+ ++
T Consensus 131 -gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~---~~~~i~~~~p~NPtG~~~~~~~l~ 206 (409)
T 4eu1_A 131 -CNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPE---GSVILVHACAHNPTGVDPTHDDWR 206 (409)
T ss_dssp -CCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCT---TCEEEEESSSCTTTCCCCCHHHHH
T ss_pred -CCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCC---CcEEEEECCCCCCCCCCCCHHHHH
Confidence 134677788999888888654457888887 45689999999999975321 2556666677888998866 55
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++ +|++||+ ++++|.+|+++
T Consensus 207 ~i~~--------------------~~~~~~~-------~li~De~y~~~ 228 (409)
T 4eu1_A 207 QVCD--------------------VIKRRNH-------IPFVDMAYQGF 228 (409)
T ss_dssp HHHH--------------------HHHHTTC-------EEEEEESCTTT
T ss_pred HHHH--------------------HHHhCCc-------EEEEecccccc
Confidence 5777 9999999 99999999876
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00021 Score=82.16 Aligned_cols=139 Identities=13% Similarity=0.081 Sum_probs=82.0
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcE--EEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGG--VLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~G--vfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
..-...++|..+++...+|||++.. .|| |=-.+||.||+.+.++- + .||-+ + +
T Consensus 94 Gce~vD~iE~la~~rak~lF~a~~A---------~w~VNVQP~SGs~AN~avy~Al----l------~PGD~---i---l 148 (490)
T 3ou5_A 94 GAEVVDEIELLCQRRALEAFDLDPA---------QWGVNVQPYSGSPANLAVYTAL----L------QPHDR---I---M 148 (490)
T ss_dssp --CHHHHHHHHHHHHHHHHTTCCTT---------TEEEECCCSSHHHHHHHHHHHH----C------C-CCC---E---E
T ss_pred CChHHHHHHHHHHHHHHHHhCCCcc---------ccCCCCCcCCHHHHHHHHHHHH----c------CCCCE---E---E
Confidence 3446789999999999999999865 244 45568999998776642 1 24421 0 0
Q ss_pred EEEecCCCchHHHHHH---HH---CC-ccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHH
Q psy11047 303 VAYCSDQAHSSVEKAG---LI---GL-VNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYC 374 (943)
Q Consensus 303 vV~~S~~aHySv~KAa---~L---G~-~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~ 374 (943)
.+=.+.-.|.|-.... .+ |. -+....++| +++.+|.+++++...+.+ |.+|++ |....--.-|++
T Consensus 149 g~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~k-----PklIi~--G~SaY~r~id~~ 221 (490)
T 3ou5_A 149 GLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFR-----PRLIIA--GTSAYARLIDYA 221 (490)
T ss_dssp CBC----------------------------CBCEETTTTEECHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHH
T ss_pred ecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcC-----CCeEEE--CCccCccccCHH
Confidence 1112455665543211 11 21 123333455 679999999999888763 777774 434433445588
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
++.+ +|++.|. ++.+|.|+=+
T Consensus 222 ~~re--------------------IAd~vGA-------~Lm~DmAHia 242 (490)
T 3ou5_A 222 RMRE--------------------VCDEVKA-------HLLADMAHIS 242 (490)
T ss_dssp HHHH--------------------HHHHHTC-------EEEEECGGGH
T ss_pred HHHH--------------------HHhhccc-------EEEechhhhh
Confidence 8887 9999999 9999999543
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00028 Score=81.04 Aligned_cols=129 Identities=13% Similarity=0.023 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 232 LEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 232 LE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
+|.+..+.|++++... ....|+++|||||..||.+||.+.- .+-+|.+...-|
T Consensus 128 ~~~~lae~l~~~~p~~-----------~~v~f~~SGsEA~e~AiklAr~~tg----------------r~~ii~~~~~yH 180 (454)
T 4ao9_A 128 LEGRLARLICERFPQI-----------EQLRFTNSGTEANLMALTAALHFTG----------------RRKIVVFSGGYH 180 (454)
T ss_dssp SHHHHHHHHHHHSTTC-----------SEEEEESSHHHHHHHHHHHHHHHHT----------------CCEEEEETTCBC
T ss_pred HHHHHHHHHHHhCCCC-----------CEEEEeCchHHHHHHHHHHHHhccc----------------CCeEEEEeCCcC
Confidence 4445556677777422 2478999999999999999996521 112333444444
Q ss_pred hHHHHHHHH-CC----ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhhhhccc
Q psy11047 312 SSVEKAGLI-GL----VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLGTAMIV 382 (943)
Q Consensus 312 ySv~KAa~L-G~----~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~~~~~ 382 (943)
-...-++.. +. .....+|-+ |.+++++.|++...+ ..+|+.----.+.|.+-| |++|.+
T Consensus 181 G~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~~~---iAavIvEPv~g~~G~~~p~~~fL~~lr~---- 248 (454)
T 4ao9_A 181 GGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHGPE---IAVVLVEPMQGASGCIPGQPDFLQALRE---- 248 (454)
T ss_dssp STTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTGGG---EEEEEECSEESTTTCEECCHHHHHHHHH----
T ss_pred CccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcCCc---eEEEEeccccCCCCccCCchhhHHHHHH----
Confidence 322111111 10 123444443 689999999865322 334443222223466655 888888
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
+|++||+ ++.+|-.+.|
T Consensus 249 ----------------lc~~~g~-------lLI~DEV~tG 265 (454)
T 4ao9_A 249 ----------------SATQVGA-------LLVFDEVMTS 265 (454)
T ss_dssp ----------------HHHHHTC-------EEEEECTTGG
T ss_pred ----------------HHhhcCC-------EEEEECCCcC
Confidence 9999999 9999977654
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=9.9e-07 Score=101.37 Aligned_cols=131 Identities=11% Similarity=-0.044 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
+..+.++.+.|+++++ .. ....|++||||||..|+.+||... | .+-+|.+...
T Consensus 139 ~~~~~~Lae~L~~~~p-~~----------~~v~~~nSGseA~~~Aik~ar~~t---------g-------r~~ii~~~~~ 191 (465)
T 2yky_A 139 TENEALFAEAVCDRFP-SI----------DLVRFTNSGTEANLMALATATAIT---------G-------RKTVLAFDGG 191 (465)
Confidence 3455556667777774 11 146899999999999999987421 1 1122333334
Q ss_pred CchHHHHHH----HHCCc-cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhhhhc
Q psy11047 310 AHSSVEKAG----LIGLV-NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLGTAM 380 (943)
Q Consensus 310 aHySv~KAa----~LG~~-~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~~~ 380 (943)
-|-+..-++ ..|.. .+..+|- -|+++|++.|+... ..+.+|+..--..++|.+-| +++|.+
T Consensus 192 yHG~~~~~~sg~~~~g~~~~~~~~~~-----~d~~~l~~~l~~~~---~~~aavi~epv~~~~G~~~~~~~~l~~l~~-- 261 (465)
T 2yky_A 192 YHGGLLNFASGHAPTNAPYHVVLGVY-----NDVEGTADLLKRHG---HDCAAILVEPMLGAGGCVPAERAFLDLLRA-- 261 (465)
Confidence 443332222 11110 2222332 26889999887531 12444554333344786655 888888
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.+|.++. +
T Consensus 262 ------------------l~~~~g~-------llI~DEv~~-~ 278 (465)
T 2yky_A 262 ------------------EASRCGA-------LLIFDEVMT-S 278 (465)
Confidence 9999999 999999998 5
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00038 Score=81.19 Aligned_cols=138 Identities=7% Similarity=-0.096 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhCC---CccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec
Q psy11047 231 ELEIITMNWLGKMIGL---PEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~---p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S 307 (943)
..|..+..|+.+-.+. +.. ....++|+|+++++..++.+...+. + ..+| -.|++.
T Consensus 143 lr~~ia~~~~~~~~~~~~~~~~--------~~~I~~t~G~~eal~~~~~~l~~~~---l--~~~G---------d~Vlv~ 200 (546)
T 2zy4_A 143 ISEKIVRQYIIREMGADAIPSE--------SVNLFAVEGGTAAMAYIFESLKLNG---L--LKAG---------DKVAIG 200 (546)
T ss_dssp HHHHHHHHHHHHHTTCTTSCGG--------GEEEEEEEHHHHHHHHHHHHHHHTT---S--SCTT---------CEEEEE
T ss_pred HHHHHHHHHHHHhccCCCCCCC--------cceEEEECCHHHHHHHHHHHhhhhh---c--CCCC---------CEEEEe
Confidence 4455566676665543 211 1267999999999877765411000 0 0122 246667
Q ss_pred CCCchHHHHHHHH-C-CccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhc
Q psy11047 308 DQAHSSVEKAGLI-G-LVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAM 380 (943)
Q Consensus 308 ~~aHySv~KAa~L-G-~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~ 380 (943)
+-+|.....++.+ + +..++.++++++ +.+|+++|++.+.. .+.+|+.+...+.+|.+-+ +++|.+
T Consensus 201 ~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~~~~l~~l~~-- 272 (546)
T 2zy4_A 201 MPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDP------AIKIFFCVNPSNPPSVKMDQRSLERVRN-- 272 (546)
T ss_dssp ESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST------TEEEEEEESSCSSSCBCCCHHHHHHHHH--
T ss_pred CCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC------CCeEEEEECCCCCCCccCCHHHHHHHHH--
Confidence 7788888777654 3 347888887643 56999999876532 2566777778888999866 455566
Q ss_pred cccccccccccccCchHHHH--HHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFI--LSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~ia--r~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+| +++|+ ++.+|.+|+.+
T Consensus 273 ------------------~a~~~~~~~-------~ii~De~y~~~ 292 (546)
T 2zy4_A 273 ------------------IVAEHRPDL-------MILTDDVYGTF 292 (546)
T ss_dssp ------------------HHHHTCTTC-------EEEEECTTGGG
T ss_pred ------------------HHHhccCCc-------EEEEeCcchhh
Confidence 77 78999 99999999865
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0004 Score=76.71 Aligned_cols=126 Identities=10% Similarity=-0.086 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
.++...+.+|+. ..|++-. .....++|+|+|+++..++.+-. . +|- ..+..|++++-
T Consensus 71 ~~lr~aia~~~~-~~g~~~~-------~~~~i~~t~G~~~al~~~~~~l~----~------~Gd-----~~~~~Vlv~~P 127 (391)
T 3bwn_A 71 PELEDAIKDLHG-VVGNAAT-------EDRYIVVGTGSTQLCQAAVHALS----S------LAR-----SQPVSVVAAAP 127 (391)
T ss_dssp HHHHHHHHHHHH-HHCSBCC-------SSSEEEEEEHHHHHHHHHHHHHH----H------TSS-----SSSEEEEECSS
T ss_pred HHHHHHHHHHHH-hcCCCCC-------CCCeEEEeCChHHHHHHHHHHhc----C------CCC-----CCcceEEEcCC
Confidence 677777777766 4455321 01268999999999877765421 1 220 01125778888
Q ss_pred CchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccc
Q psy11047 310 AHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 310 aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~ 389 (943)
+|.+...++...+.+++.+++|.++ ++ . ..+.+|+.+...+.+|.+-+ +|++
T Consensus 128 ~y~~~~~~~~~~g~~~~~~~~d~~~-l~---------~-----~~~k~v~l~~p~NPtG~~~~--~l~~----------- 179 (391)
T 3bwn_A 128 FYSTYVEETTYVRSGMYKWEGDAWG-FD---------K-----KGPYIELVTSPNNPDGTIRE--TVVN----------- 179 (391)
T ss_dssp CCTHHHHHHHTTCBTTEEEEEESTT-CC---------C-----CSCEEEEEESSCTTTCCCCC--CCC------------
T ss_pred CchhHHHHHHHcCCeEEEecCCHHH-cC---------C-----CCCEEEEECCCCCCCchhHH--HHHH-----------
Confidence 9999888886434466777776543 22 0 12567777888888998864 3333
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
-++.+++ |+++|.+|+.
T Consensus 180 ---------~~~~~~~-------~ii~De~y~~ 196 (391)
T 3bwn_A 180 ---------RPDDDEA-------KVIHDFAYYW 196 (391)
T ss_dssp -------------CCC-------EEEEECTTCS
T ss_pred ---------HhhcCCC-------EEEEeCCCCC
Confidence 2222338 9999999973
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0016 Score=74.92 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=43.7
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAELA 700 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~~ 700 (943)
+..++.+.+.++|.+ +.+. + .++|+.....+|++|||++++.+++..++++++++
T Consensus 419 ~~~~~~~~~~~~Gll-~~~~---g-~~i~l~PPL~it~~eid~~~~~l~~al~~v~aelA 473 (473)
T 4e3q_A 419 VSERIANTCTDLGLI-CRPL---G-QSVVLCPPFILTEAQMDEMFDKLEKALDKVFAEVA 473 (473)
T ss_dssp HHHHHHHHHHHTTEE-CEEE---T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCcE-EEec---C-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456788888888864 4332 3 47898777778999999999999999999988863
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.036 Score=63.53 Aligned_cols=52 Identities=8% Similarity=-0.009 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 640 ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 640 ~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
.+..++.+++.++|.+.. ++.. ...+||+.....+|+++|+++++.|.+..+
T Consensus 402 ~~~~~v~~~~~~~Gvl~~-~~g~-~~~~irl~PpL~it~~~id~~l~~l~~al~ 453 (456)
T 4atq_A 402 ELTKAVAAACLKEGVIIL-TCGT-YGNVIRLLPPLVISDELLIDGLEVLAAAIK 453 (456)
T ss_dssp HHHHHHHHHHHHTTEECE-EECT-TSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEE-ecCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 456778888889996533 2211 235899987777899999999999887754
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0048 Score=75.77 Aligned_cols=48 Identities=15% Similarity=0.033 Sum_probs=37.5
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
....+.+++.++|. ++.+. ...+|++..+.+|++||+++++.|.++.+
T Consensus 779 ~a~~~~~~l~e~Gv-~v~p~----g~~lrl~pp~~~t~e~id~~~~~l~~~l~ 826 (831)
T 4a0g_A 779 YAKSLLIMLREDGI-FTRPL----GNVIYLMCGPCTSPEICRRLLTKLYKRLG 826 (831)
T ss_dssp HHHHHHHHHHHTTE-ECCCB----TTEEEEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCc-EEEec----CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 45678888888885 44432 36899998899999999999999987643
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0011 Score=74.58 Aligned_cols=112 Identities=4% Similarity=-0.126 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
..+++..+.+|+.+.-+.... ....++|+|+|+++..++.+- .. ...+ ....+.-.|++++
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~--------~~~iv~t~G~~~al~~~~~~l-----~~---~~~~---~~~~~Gd~Vlv~~ 162 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAK--------DRYIVFGVGVTQLIHGLVISL-----SP---NMTA---TPDAPESKVVAHA 162 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCT--------TCEEEEESHHHHHHHHHHHHH-----SC---CTTT---CTTSCCEEEEECS
T ss_pred hHHHHHHHHHHHHHhCCcCCC--------CCEEEEeCCHHHHHHHHHHHH-----hh---cccc---ccCCCCCEEEEeC
Confidence 577888888888765432211 136899999999987776542 00 0000 0001223577888
Q ss_pred CCchHHHHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc
Q psy11047 309 QAHSSVEKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS 372 (943)
Q Consensus 309 ~aHySv~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp 372 (943)
-.|.+...++. .|. +++. +.+|+++|++++... +.+|+.+..++.+|.+-+
T Consensus 163 P~y~~~~~~~~~~g~-~~~~------~~~d~~~l~~~~~~~------~k~v~l~~p~NPtG~~~~ 214 (427)
T 2hox_A 163 PFYPVFREQTKYFDK-KGYV------WAGNAANYVNVSNPE------QYIEMVTSPNNPEGLLRH 214 (427)
T ss_dssp SCCHHHHHHHHHSCB-TTEE------EEEEGGGGTTCSCGG------GEEEEEESSCTTTCCCCC
T ss_pred CCcccHHHHHHHcCC-eeee------ecCCHHHHHHhhcCC------ceEEEEcCCCCCcccccH
Confidence 89988888875 454 3322 346778887766542 566777778888998877
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.018 Score=64.62 Aligned_cols=147 Identities=11% Similarity=0.029 Sum_probs=95.6
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.|.......++-..+.+|+.+.-+.+.. ...-..++|.||++|...++.+-.+ + .+
T Consensus 67 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~------~~~i~i~~t~G~~~al~~~~~~l~~-----~------------~~- 122 (405)
T 3k7y_A 67 PYLLGNGTEDFSTLTQNLIFGNNSKYIE------DKKICTIQCIGGTGAIFVLLEFLKM-----L------------NV- 122 (405)
T ss_dssp CCCTTSSCHHHHHHHHHHHHCSSCTTTT------TTCEEEEEEEHHHHHHHHHHHHHHT-----T------------TC-
T ss_pred CCCCCCCcHHHHHHHHHHHcCCCCcccc------ccceEEEEcCchHHHHHHHHHHHHh-----c------------CC-
Confidence 4444445566777777777544333211 0001368999999998776553210 0 02
Q ss_pred eEEEecCCCchHHHHHHHHCCccEEEEec-C-CCCCcCHHHHHHHHHHhhccCCCcEEEEEec-CCCccccccc---HHH
Q psy11047 302 LVAYCSDQAHSSVEKAGLIGLVNMRYIES-D-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGL-ALPAFLVVDS---YCC 375 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa~LG~~~v~~Vp~-D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTa-GTT~tGaIDp---L~e 375 (943)
-.|++.+-+......++.+-+.+++.+|. + +++.+|.++|+++++.... +.+++.+. ..+-||.+-+ +++
T Consensus 123 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~----~~~i~l~~~~~NPTG~~~s~~~~~~ 198 (405)
T 3k7y_A 123 ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPN----GSSVILQISCYNPCSVNIEEKYFDE 198 (405)
T ss_dssp CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCS----SCEEEECCSSCTTTCCCCCHHHHHH
T ss_pred CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCC----CeEEEEeCCCCCCCCCCCCHHHHHH
Confidence 24666666666666666554458888887 3 3589999999999986321 33555544 3688898855 566
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|++ +|++|++ |+-.|-+|+..
T Consensus 199 l~~--------------------~~~~~~~-------~vi~De~Y~~l 219 (405)
T 3k7y_A 199 IIE--------------------IVLHKKH-------VIIFDIAYQGF 219 (405)
T ss_dssp HHH--------------------HHHHHCC-------EEEEEESCTTT
T ss_pred HHH--------------------HHHHCCe-------EEEEecCcccc
Confidence 677 8999999 99999999876
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.082 Score=59.83 Aligned_cols=119 Identities=14% Similarity=0.036 Sum_probs=77.6
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEEec--CCCCCc
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYIES--DDKLSL 336 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~--D~~grm 336 (943)
..+-|.|||.|.-.|+....... ..|| -.|++++-+-.+-..... .|...|...+. ++.+.+
T Consensus 111 ~~~qt~ggtga~~~a~~~l~~~~------~~pg---------d~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~ 175 (420)
T 4h51_A 111 VAVQTLSGTGAVSLGAKLLTRVF------DAET---------TPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSL 175 (420)
T ss_dssp EEEEEEHHHHHHHHHHHHHTTTS------CTTT---------SCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEE
T ss_pred ceeeecCchHHHHHHHHHHHHhc------CCCC---------CEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCC
Confidence 45679999999887766432110 0122 225555544333333333 46544544432 356788
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchh
Q psy11047 337 RGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 413 (943)
Q Consensus 337 D~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lw 413 (943)
|.+.+.+.+..... ...+++.+...+-||.+-+ +++|++ +|+++++ |
T Consensus 176 d~~~~~~~l~~~~~---~~~vll~~~p~NPtG~~~~~~~~~~i~~--------------------~~~~~~~-------~ 225 (420)
T 4h51_A 176 NFEGMKKDILAAPD---GSVFILHQCAHNPTGVDPSQEQWNEIAS--------------------LMLAKHH-------Q 225 (420)
T ss_dssp CHHHHHHHHHHSCS---SCEEEEESSSCTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------E
T ss_pred CHHHHHHHHhccCC---CcEEEEeCCCCCCCCCCCCHHHHHHHHH--------------------HHHhcCc-------e
Confidence 99999998876532 2556666677888998744 677777 9999999 9
Q ss_pred hhHHhhhcCC
Q psy11047 414 QKFEALVLGD 423 (943)
Q Consensus 414 LHVDAA~GG~ 423 (943)
+-.|-+|.++
T Consensus 226 ~~~D~~Y~~~ 235 (420)
T 4h51_A 226 VFFDSAYQGY 235 (420)
T ss_dssp EEEEESCTTT
T ss_pred Eeeehhhhhh
Confidence 9999999887
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 943 | ||||
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 1e-69 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 3e-23 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 1e-11 | |
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 7e-22 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 8e-04 |
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 237 bits (605), Expect = 1e-69
Identities = 138/261 (52%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDY+ADYLE I R+VYPDV+PGYLR L+P +AP EP+ ++ I+ D+EK+IMPG+T
Sbjct: 10 GKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SPY AYFP +SYP++L DML AI C+GF+WA+SPACTELE + M+WLGKM+ LP
Sbjct: 70 HWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FL + GGV+Q +ASE+TL+ LLA RT+ +R+ Q + P L + +LVAY S
Sbjct: 130 EAFLAGEAGEG-GGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYAS 188
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVE+AGLIG V ++ I SD K ++R L EA+ERDK LIPFF+ + L +
Sbjct: 189 DQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSC 248
Query: 368 LVVDSYCCLGTAMIVKGLGFY 388
D+ +G + + +
Sbjct: 249 CSFDNLLEVGPICHEEDIWLH 269
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 101 bits (253), Expect = 3e-23
Identities = 73/223 (32%), Positives = 104/223 (46%), Gaps = 56/223 (25%)
Query: 479 FTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAI--DYMHWQIPLSKRFRALKLWFV 536
S + VK L F ++P+YL+H + G + DY HWQ+PL +RFR+LK+WFV
Sbjct: 306 LVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFV 365
Query: 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS 596
R +G+KGLQ +IR
Sbjct: 366 FRMYGVKGLQAYIR---------------------------------------------- 379
Query: 597 YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 656
+ V+L+ +FEA VL DPRFE+ A LG+V RL G + L E LL+R+NS ++H
Sbjct: 380 -----KHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIH 434
Query: 657 CVPASLRIQGLGRAQ--NFTRTTNDDITRDWNEIRNTATEILA 697
VP LR Q + R + + + + W IR A E+LA
Sbjct: 435 LVPCRLRGQFVLRFAICSR-KVESGHVRLAWEHIRGLAAELLA 476
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 65.6 bits (159), Expect = 1e-11
Identities = 31/62 (50%), Positives = 42/62 (67%)
Query: 408 QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467
+ V+L+ +FEA VL DPRFE+ A LG+V RL G + L E LL+R+NS ++H VP
Sbjct: 380 KHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCR 439
Query: 468 LR 469
LR
Sbjct: 440 LR 441
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 97.6 bits (242), Expect = 7e-22
Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 24/223 (10%)
Query: 129 KEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITH 188
K++ D ++ L+ R + P + + I ++ + G
Sbjct: 2 KQVTDLRSELLD---SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDEL---YLDGNAR 55
Query: 189 WQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPE 248
A F + ++ +IN P +++ +N + + P
Sbjct: 56 QN----LATF-CQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPA 110
Query: 249 EFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308
+ G +SE+ ++ +A + ++ E A +
Sbjct: 111 PK-----NGQAVGTNTIGSSEACMLGGMAMKWRWRKRM-------EAAGKPTDKPNLVCG 158
Query: 309 QAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKK 350
K V +R I L + ++IEA + +
Sbjct: 159 PVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTI 201
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.7 bits (94), Expect = 8e-04
Identities = 19/156 (12%), Positives = 42/156 (26%), Gaps = 27/156 (17%)
Query: 209 GDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTAS 268
G S I+ + A S ++ + + K+ G+ V+
Sbjct: 72 GIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHS--------VASCFVVPMATG 123
Query: 269 ESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL---IGLVNM 325
S +C L R + + S K+ + V +
Sbjct: 124 MSLTLCFLTLRHKRPK----------------AKYIIWPRIDQKSCFKSMVTAGFEPVVI 167
Query: 326 RYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSG 361
+ D+L + I+ +H++ +
Sbjct: 168 ENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTA 203
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 943 | |||
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 100.0 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 100.0 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.97 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.96 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.87 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.87 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.86 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.81 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.79 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.77 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.74 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.73 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.69 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.66 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.61 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.61 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.56 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.49 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.43 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.4 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.33 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.26 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.21 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.18 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.18 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.15 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.1 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.09 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.06 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.06 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.05 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.97 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 98.96 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 98.94 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.93 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 98.88 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 98.85 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 98.81 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 98.79 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 98.76 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 98.75 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 98.7 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 98.7 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 98.68 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 98.63 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 98.59 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 98.57 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 98.57 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 98.51 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 98.45 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 98.42 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 98.39 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 98.39 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 98.3 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 98.19 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 98.19 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 98.17 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 98.14 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 97.96 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 97.92 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 97.9 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 97.89 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 97.83 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 97.79 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 97.76 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 97.72 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 97.58 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 97.51 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 97.5 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 97.5 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 97.5 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 97.5 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 97.5 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 97.35 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 97.28 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 97.22 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 97.21 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 97.18 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 97.13 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 96.24 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 96.04 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 95.5 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 94.84 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 93.9 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 90.41 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 89.65 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 84.47 |
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=1.6e-86 Score=760.70 Aligned_cols=463 Identities=48% Similarity=0.830 Sum_probs=421.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEc
Q psy11047 119 IPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYF 198 (943)
Q Consensus 119 ~~~e~fr~~~~~~vd~i~dyl~~~~~~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~ 198 (943)
||+++||+.+++|+|+++||+++++++||+|+++|+++++.++..+|++|++++++++++.+.+.++++||+||+|+||+
T Consensus 1 m~~~~fr~~~~~~~d~i~d~~~~~~~~~v~~~~~p~~l~~~~~~~~P~~g~~~~~~l~~~~~~i~~~~~~~~~P~f~~~~ 80 (476)
T d1js3a_ 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYF 80 (476)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHhcCcccCcCCCCHHHHHHHHHHHHhCCCCCCCCCCeeEeC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHH
Q psy11047 199 PALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAG 278 (943)
Q Consensus 199 ~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aA 278 (943)
++++++++++|++++.++|+|+.+|+.||++++||.+|++||++|+|+|+.+.. .....++|+||+|||+||++||++|
T Consensus 81 ~~~~~~~~~l~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~-~~~~~~~G~~~~Ggs~anl~al~~A 159 (476)
T d1js3a_ 81 PTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLA-GEAGEGGGVIQGSASEATLVALLAA 159 (476)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCC-TTTCSCEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHhCCCccccc-CCCCCCCceECCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987543 2234578999999999999999999
Q ss_pred HHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEE
Q psy11047 279 RTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFF 357 (943)
Q Consensus 279 R~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~ 357 (943)
|++++++++...+|+......+++++|+|+++|||+.||+. +|. .++.||+|++|+||+++|+++|+++.++|..|++
T Consensus 160 R~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl-~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~ 238 (476)
T d1js3a_ 160 RTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGV-KLKAIPSDGKFAMRASALQEALERDKAAGLIPFF 238 (476)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTC-EEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCc-eEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEE
Confidence 99988877665666554444568999999999999999995 565 5889999999999999999999999999999999
Q ss_pred EEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcccccccccccee
Q psy11047 358 IFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMV 437 (943)
Q Consensus 358 VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~V 437 (943)
||+|+|||.+|+||||++|++ +|++||+ |+||||||||+ +.
T Consensus 239 VvataGtt~~G~iDpl~~I~~--------------------i~~~~~~-------wlHVDAA~Gg~-~~----------- 279 (476)
T d1js3a_ 239 VVATLGTTSCCSFDNLLEVGP--------------------ICHEEDI-------WLHVDAAYAGS-AF----------- 279 (476)
T ss_dssp EEEEBSCTTTCCBCCHHHHHH--------------------HHHHTTC-------EEEEECTTGGG-GG-----------
T ss_pred EeecCCCccceeeccHHHHHH--------------------HHHhcCc-------EEEEecccchh-hh-----------
Confidence 999999999999999999999 9999999 99999999998 32
Q ss_pred eeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCcccccc
Q psy11047 438 VIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRH 508 (943)
Q Consensus 438 cFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~ 508 (943)
+++++++++.|+++||||++|+||||+ +|++..+..++...+.|+.+
T Consensus 280 ------------------------~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~ 335 (476)
T d1js3a_ 280 ------------------------ICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKH 335 (476)
T ss_dssp ------------------------GSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC--------
T ss_pred ------------------------hhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhcc
Confidence 567788999999999999999999999 78887777788888889876
Q ss_pred CC--CCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccc
Q psy11047 509 EN--SGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKL 586 (943)
Q Consensus 509 ~~--~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~ 586 (943)
.. .+..+|++++++++||+++|+++|++++.+|.+||++++++
T Consensus 336 ~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~----------------------------------- 380 (476)
T d1js3a_ 336 SHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRK----------------------------------- 380 (476)
T ss_dssp ----CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred ccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHH-----------------------------------
Confidence 54 33456889999999999999999999999999999999999
Q ss_pred cCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCc
Q psy11047 587 QTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQG 666 (943)
Q Consensus 587 ~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~ 666 (943)
.+++|++|++.|+++|+||++.+|.+|+||||+++.+.+|++|+++|+++|++|++++.++|+.
T Consensus 381 ----------------~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~d~~n~~l~~~l~~~G~~~~s~t~~~g~~ 444 (476)
T d1js3a_ 381 ----------------HVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQF 444 (476)
T ss_dssp ----------------HHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEE
T ss_pred ----------------HHHHHHHHHHHHhcCCCeEEECCCceEEEEEEccCChHHHHHHHHHHHhcCCEEEeeeeECCEE
Confidence 4679999999999999999999999999999999988999999999999999999999999999
Q ss_pred EEEE-eecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 667 LGRA-QNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 667 ~lR~-v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
++|+ ++|++||++||+.+++.|++++++|++
T Consensus 445 ~lR~~i~n~~Tt~~did~~~~~i~~~a~~lla 476 (476)
T d1js3a_ 445 VLRFAICSRKVESGHVRLAWEHIRGLAAELLA 476 (476)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 9999 789999999999999999999999873
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-52 Score=476.03 Aligned_cols=400 Identities=13% Similarity=0.068 Sum_probs=318.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHH-cCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHH
Q psy11047 162 ESAPVEPEKWDTIMGDIEKVI-MPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWL 240 (943)
Q Consensus 162 ~~lPe~G~~~e~iL~~l~~~I-~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wL 240 (943)
..+|++|.+.+++.+.+.+.+ +++..+++. ..|+++ .++..++++++.++|.|...++.+|++++||.+|++||
T Consensus 28 ~~~p~~~~~~~~~~~~i~d~l~~dg~~~~n~---asf~~t--~~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~l 102 (450)
T d1pmma_ 28 KRFPLHEMRDDVAFQIINDELYLDGNARQNL---ATFCQT--WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMV 102 (450)
T ss_dssp SSCCCSCCCHHHHHHHHHHHGGGSCCGGGBC---SCCSCC--CCCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHH
T ss_pred ccCCccCCCHHHHHHHHHHHhccCCCccccc---cccccC--CCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHH
Confidence 378999999999999998764 444333332 233333 23456889999999999999999999999999999999
Q ss_pred HHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH
Q psy11047 241 GKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI 320 (943)
Q Consensus 241 a~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L 320 (943)
|+|||+|+.+ .+.++|++|+||||||++|+++||+++.++...... .....+|+|.++|+|+.|||.+
T Consensus 103 a~L~~~p~~~-----~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~-------~~~~~~~~~~~~H~s~~Kaa~~ 170 (450)
T d1pmma_ 103 ADLWHAPAPK-----NGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGK-------PTDKPNLVCGPVQICWHKFARY 170 (450)
T ss_dssp HHHTTCCCCT-----TSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTC-------CCSCCEEEESSCCHHHHHHHHH
T ss_pred HHHhCCCccc-----cCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCC-------CCCCceEEecccHHHHHHHHHH
Confidence 9999999752 234679999999999999999999987654432211 1234567788999999999965
Q ss_pred CCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHH
Q psy11047 321 GLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNF 399 (943)
Q Consensus 321 G~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~i 399 (943)
-+..++.||+++ +|+||+++|+++|+++ +++|++|+|||.+|++||+.+|++.+. .+ ..
T Consensus 171 ~gi~~~~v~~~~~~~~~d~~~L~~~i~~~------t~~Vv~t~gtt~tG~~dpv~~i~~i~~-------------~~-~~ 230 (450)
T d1pmma_ 171 WDVELREIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALD-------------KF-QA 230 (450)
T ss_dssp TTCEEEECCCBTTBCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHH-------------HH-HH
T ss_pred cCCCceEeeecCCCCcCcHHHHHHHhhhC------ceEEEeeeeeccCCCccccchhhHHHH-------------HH-HH
Confidence 444889999875 6999999999999876 789999999999999999999988100 00 13
Q ss_pred HHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEE
Q psy11047 400 ILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNF 479 (943)
Q Consensus 400 ar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSI 479 (943)
|+++|+ |+||||||||+.+ | ++.+...+..|+++||||
T Consensus 231 a~~~~i-------~lHVDAA~gG~~~---p--------------------------------~~~~~~~~~~~~~~aDSi 268 (450)
T d1pmma_ 231 DTGIDI-------DMHIDAASGGFLA---P--------------------------------FVAPDIVWDFRLPRVKSI 268 (450)
T ss_dssp HHCCCC-------CEEEECTTGGGTH---H--------------------------------HHCTTCCCSTTSTTEEEE
T ss_pred HhccCc-------EEEeehhhcccee---e--------------------------------eechhhhhhhcccceeEe
Confidence 566888 9999999998722 1 344555667789999999
Q ss_pred EEcCCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCc-chHHHHHHHHHHHHHHHHHHH
Q psy11047 480 TIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF-RALKLWFVIRNFGIKGLQKHI 549 (943)
Q Consensus 480 tiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf-rALklW~tLr~~G~~Gl~~~I 549 (943)
++|+||||+ +|++..+...+...+.|+.. ++.++++++||++ .++++|++++.+|.+||++++
T Consensus 269 ~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~-------~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~ 341 (450)
T d1pmma_ 269 SASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGG-------QIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQ 341 (450)
T ss_dssp EEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTE-------EEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCC-------CcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999998 67777776677777888853 4567899999985 667899999999999999999
Q ss_pred HHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC----
Q psy11047 550 REIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA---- 625 (943)
Q Consensus 550 ~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~---- 625 (943)
++ .+++|++|++.|+++++|+++.+
T Consensus 342 ~~---------------------------------------------------~~~la~~l~~~L~~~~~~el~~~~~p~ 370 (450)
T d1pmma_ 342 NA---------------------------------------------------SYQVAAYLADEIAKLGPYEFICTGRPD 370 (450)
T ss_dssp HH---------------------------------------------------HHHHHHHHHHHHHTTSCEEEEEECCTT
T ss_pred HH---------------------------------------------------HHHHHHHHHHHHHhCCCeEEEeCCCCC
Confidence 99 46789999999999999999853
Q ss_pred CCccEEEEEecCCC--hH-HHHHHHHHhccCcEEEe---ecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 626 RHLGMVVIRLLGEN--IL-TEKLLKRLNSKGRLHCV---PASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 626 ~~l~iV~Fr~~g~n--~l-~~~Ll~~L~~~G~~~~s---~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
+.+++||||+++.. .+ ...+.++|.++|++..+ |....+..++|+++++.+|.+++++|++.|+++++.+.++
T Consensus 371 ~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~~ 449 (450)
T d1pmma_ 371 EGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDH 449 (450)
T ss_dssp TBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 56889999997632 12 35788899999985332 2334567799999999999999999999999999988764
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.6e-30 Score=288.64 Aligned_cols=382 Identities=11% Similarity=0.003 Sum_probs=245.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccC-------------Chh
Q psy11047 162 ESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWAS-------------SPA 228 (943)
Q Consensus 162 ~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~-------------SPa 228 (943)
.++|++|.+.++|+..+.++..-.... ++.+ ...+.....+.++++...++.+...+.. ++.
T Consensus 17 ~~lP~~G~~~~~i~~~l~~~~~~d~~~--~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (445)
T d3bc8a1 17 GKCPEDGWDESTLELFLHELAVMDSNN--FLGN---CGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSL 91 (445)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHTBGGG--CTTC---CCCSSCCCCCSCHHHHHHTTTCCSCBCC-------CCSBHHHHH
T ss_pred CCCCcCCCCHHHHHHHHHHHHhccCCc--ccCc---ccccccCccccHHHHHHHHHhhccccccCcchhhhhhhhccchH
Confidence 478999999999999888765333222 2222 2222111122334444444433332221 234
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
...||.+++.|+++++|++.. ..|++|+|||++++.+++.|+.+.. + .+.+|++|.
T Consensus 92 ~~~le~~~~~~~~~l~g~~~~---------~~~~~~~~~t~~~~~~~l~a~~~~~-------~--------~~~~vi~~~ 147 (445)
T d3bc8a1 92 LNKITNSLVLNVIKLAGVHSV---------ASCFVVPMATGMSLTLCFLTLRHKR-------P--------KAKYIIWPR 147 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCTTC---------CEEEEESSCHHHHHHHHHHHHHHHC-------T--------TCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCcc---------cCccccccchHHHHHHHHHHHHHhC-------C--------CCCEEEEcC
Confidence 578999999999999999875 5799999999887776666653221 1 235688999
Q ss_pred CCchHHHHHHH-HCCc--cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccc
Q psy11047 309 QAHSSVEKAGL-IGLV--NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGL 385 (943)
Q Consensus 309 ~aHySv~KAa~-LG~~--~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~ 385 (943)
.+|+|+.||+. +|.. .|..++.+++++||+++|+++|++...++ +.+|+++++++.+|.+||+++|++
T Consensus 148 ~~H~s~~~a~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~--~~~v~~~~~~~~~G~~~~~~~i~~------- 218 (445)
T d3bc8a1 148 IDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEH--ILCLHSTTACFAPRVPDRLEELAV------- 218 (445)
T ss_dssp CCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGG--EEEEEEESSCCTTBCCCCHHHHHH-------
T ss_pred cccHHHHHHHHHcCCeeEEEEeeccCcccccCHHHHHHHHHhccccC--eEEEEEeCCCCCCeeehhHHHHHH-------
Confidence 99999999995 4553 23334567899999999999999865544 789999999999999999999999
Q ss_pred ccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccc
Q psy11047 386 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP 465 (943)
Q Consensus 386 ~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~ 465 (943)
+|++||+ |+|+|+|+|++..+ +.+
T Consensus 219 -------------~~~~~~~-------~l~vD~a~~~~~~~------------------------------------~~~ 242 (445)
T d3bc8a1 219 -------------ICANYDI-------PHVVNNAYGLQSSK------------------------------------CMH 242 (445)
T ss_dssp -------------HHHHHTC-------CEEEECTTTTTCHH------------------------------------HHH
T ss_pred -------------HHHHhCC-------cEEEEccchhhhhh------------------------------------ccc
Confidence 9999999 99999999987222 111
Q ss_pred hhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCC-CcchHHHHHHHHHHHHHH
Q psy11047 466 ASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSK-RFRALKLWFVIRNFGIKG 544 (943)
Q Consensus 466 ~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SR-rfrALklW~tLr~~G~~G 544 (943)
......++..+|++++|+|||++......+. +..+..++.. ...+..+++ ....+.+|.+++.+|..|
T Consensus 243 ~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l--~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 311 (445)
T d3bc8a1 243 LIQQGARVGRIDAFVQSLDKNFMVPVGGAII--AGFNEPFIQD---------ISKMYPGRASASPSLDVLITLLSLGCSG 311 (445)
T ss_dssp HHHHHHHHSCCCEEEEEHHHHHSCCSSCEEE--EESCHHHHHH---------HHHHSCSCBCSHHHHHHHHHHHHHHHHH
T ss_pred cchhccCcCCcceEEecCccccccCCCCcee--eeCChHHHHH---------HHHHHhhcccCcchHHHHHHHHHHhhhc
Confidence 2222223567899999999998833322110 0000001100 001112223 346789999999999999
Q ss_pred HHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCC---CCeE
Q psy11047 545 LQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD---PRFE 621 (943)
Q Consensus 545 l~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~---p~~e 621 (943)
+.+.++... .+++++.+.|++. -+..
T Consensus 312 ~~~~~~~~~---------------------------------------------------~~~~~~~~~L~~l~~~~~~~ 340 (445)
T d3bc8a1 312 YRKLLKERK---------------------------------------------------EMFVYLSTQLKKLAEAHNER 340 (445)
T ss_dssp HHHHHHHHH---------------------------------------------------HHHHHHHHHHHHHHHHTTCC
T ss_pred chhhHHHHH---------------------------------------------------HHHHHHHHHHHHHHhhcCce
Confidence 999998842 3344444444332 2444
Q ss_pred EecCCC-ccEEEEEecCC----ChHHHHHHHHHhccCc---EEEeec--------c---------cCCCcEEEEeecCCC
Q psy11047 622 IPAARH-LGMVVIRLLGE----NILTEKLLKRLNSKGR---LHCVPA--------S---------LRIQGLGRAQNFTRT 676 (943)
Q Consensus 622 Il~~~~-l~iV~Fr~~g~----n~l~~~Ll~~L~~~G~---~~~s~t--------~---------~~g~~~lR~v~~~~t 676 (943)
++..+. ....++.+... ......+...|...|. -.+.+. . .-...++|+.++..+
T Consensus 341 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~ 420 (445)
T d3bc8a1 341 LLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGM 420 (445)
T ss_dssp BCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTC
T ss_pred eecCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCC
Confidence 544333 33334444321 1223345555555442 111110 0 001346999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 677 TNDDITRDWNEIRNTATEILAEL 699 (943)
Q Consensus 677 t~edId~ll~~I~~~~~~ll~~~ 699 (943)
|++|||++++.|+++.+++.++.
T Consensus 421 T~eDID~~v~~L~kilk~~rk~~ 443 (445)
T d3bc8a1 421 KMQDVDLFIKRLDKCLNIVRKEQ 443 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999998877663
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.96 E-value=1.4e-27 Score=264.84 Aligned_cols=400 Identities=11% Similarity=0.050 Sum_probs=262.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEE
Q psy11047 118 KIPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAY 197 (943)
Q Consensus 118 ~~~~e~fr~~~~~~vd~i~dyl~~~~~~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~ 197 (943)
.|-.+++++..+.+++...+.++++-++ ..+|++|.+.+++.+.+.+........|.+....|.
T Consensus 8 ~~ip~~~~~~~~~~~~~~~~~~~~l~~~----------------~~lP~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~g~ 71 (434)
T d2z67a1 8 GLIPKNMEKRGELVLNEYLKEIEDVFNH----------------RKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGE 71 (434)
T ss_dssp SSSCHHHHHHHHHHHHHHTHHHHHHHHH----------------CSCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEECSS
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHhc----------------ccCCCCCCCHHHHHHHHHHHHhcCcccccccccccc
Confidence 3445789999999999988888774322 246788999999999998876555556666554443
Q ss_pred ccCCCChHHHHHHHHHH---HHhccCccccC------ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChH
Q psy11047 198 FPALNSYPSLLGDMLSD---AINCLGFTWAS------SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTAS 268 (943)
Q Consensus 198 ~~~~~s~~silgd~L~~---alN~n~~~~~~------SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGT 268 (943)
.... .++.++...... ....+...... +.....+|.+++.|+++++|.+.. ++....||+
T Consensus 72 ~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~----------~~~~~~~t~ 140 (434)
T d2z67a1 72 REAR-TYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH----------AIATPISTG 140 (434)
T ss_dssp CCCC-CSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE----------EEEESSCHH
T ss_pred eecc-cchhHHhhcccccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCcc----------eeecCcHHH
Confidence 3222 122333221111 11111111111 124568899999999999999764 334444555
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH-CCc--cEEEEecCCCCCcCHHHHHHHH
Q psy11047 269 ESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI-GLV--NMRYIESDDKLSLRGDKLIEAI 345 (943)
Q Consensus 269 eANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L-G~~--~v~~Vp~D~~grmD~daLe~aI 345 (943)
+++..+|.++|... ++..|++|..+|+|+.|++.+ |.. .+..++.++++.||+++|+++|
T Consensus 141 ~~~~~~l~a~r~~~-----------------~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i 203 (434)
T d2z67a1 141 MSISLCLSAARKKY-----------------GSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAI 203 (434)
T ss_dssp HHHHHHHHHHHHHH-----------------CCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-----------------cCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHH
Confidence 55555655544321 234688999999999999964 542 2334456788999999999999
Q ss_pred HHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCc
Q psy11047 346 ERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPR 425 (943)
Q Consensus 346 ~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~a 425 (943)
+++...+. +.+|+++.+++..|.+||+++|++ +|++||+ |+|||+|+|+...
T Consensus 204 ~~~~~~~~-~~~v~~~~~~~~~g~~~~l~~i~~--------------------~~~~~~~-------~l~vD~a~g~~~~ 255 (434)
T d2z67a1 204 KKEIELGN-RPCVLSTLTFFPPRNSDDIVEIAK--------------------ICENYDI-------PHIINGAYAIQNN 255 (434)
T ss_dssp HHHHHTTC-CEEEEEESSCCTTBCCCCHHHHHH--------------------HHHHHTC-------CEEEECTTTTTCH
T ss_pred HhhhhcCC-ceEEEeccCcCCCccccCHHHHHH--------------------HHHHhCC-------eEEEeccchhhhh
Confidence 99877664 568999999999999999999999 9999999 9999999987622
Q ss_pred cccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccc
Q psy11047 426 FEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLY 505 (943)
Q Consensus 426 feLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~Y 505 (943)
+ .+..... .+...+|++++|+||+++...+..+. +..+..+
T Consensus 256 ~------------------------------------~~~~~~~-~~~~~~D~~~~s~hK~l~~~~g~~~~--~~~~~~~ 296 (434)
T d2z67a1 256 Y------------------------------------YLEKLKK-AFKYRVDAVVSSSDKNLLTPIGGGLV--YSTDAEF 296 (434)
T ss_dssp H------------------------------------HHHHHHH-HHTSCCSEEEEEHHHHHCCCSSCEEE--EESCHHH
T ss_pred h------------------------------------ccccccc-cccCCcceEEEcCccccccCCCcccc--ccCcHHH
Confidence 2 1111111 12347899999999998843322110 0011112
Q ss_pred cccCCCCcccccCccccCC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccc
Q psy11047 506 LRHENSGLAIDYMHWQIPL-SKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKM 584 (943)
Q Consensus 506 L~~~~~g~~~d~~~~tie~-SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i 584 (943)
+..- ..+..+ +....++.+|+++..+|.+|+.+.+++.
T Consensus 297 ~~~~---------~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~-------------------------------- 335 (434)
T d2z67a1 297 IKEI---------SLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQ-------------------------------- 335 (434)
T ss_dssp HHHH---------HTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHH---------HhhcccccccchHHHHHHHHHHHHHhcchhHHHHH--------------------------------
Confidence 1110 011122 2345788999999999999999988883
Q ss_pred cccCCCcccccccCCcHHHHHHHHHHHHHHhCC---CCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcE---EEe
Q psy11047 585 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD---PRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRL---HCV 658 (943)
Q Consensus 585 ~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~---p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~---~~s 658 (943)
.++++++++.|+++ .++.++..+..+.+++..... ..++...|.++|.. ...
T Consensus 336 -------------------~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~~---~~~l~~~L~~~gI~g~~v~~ 393 (434)
T d2z67a1 336 -------------------KNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSD---PVEIAAKLYNLRVTGPRGIK 393 (434)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSSC---HHHHHHHHHHTTEESCEEEC
T ss_pred -------------------HHHHHHHHHHHHHhhhhcCceecCCCCCceeeeecCCC---HHHHHHHHHHcCCeeeehhh
Confidence 34555555555443 467777777777777776432 45677777777642 122
Q ss_pred ecc--------cCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 659 PAS--------LRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 659 ~t~--------~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
+.. .....++|+.++..+|++|||++++.|+++
T Consensus 394 ~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~~i~~L~kI 434 (434)
T d2z67a1 394 KTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 434 (434)
T ss_dssp TTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred hccccCeeeecccCCCeEEEecCCCCCHHHHHHHHHHHhcC
Confidence 111 112467999999999999999999999863
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.87 E-value=4.5e-21 Score=211.77 Aligned_cols=356 Identities=11% Similarity=0.044 Sum_probs=231.7
Q ss_pred eeEEccCCCChHHHHHHHHHHHHhccC----ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHH
Q psy11047 194 MHAYFPALNSYPSLLGDMLSDAINCLG----FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASE 269 (943)
Q Consensus 194 f~g~~~~~~s~~silgd~L~~alN~n~----~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTe 269 (943)
|+.+-.+++.+..++..+....-|.++ ..+..+-.+.++-..+++.+++++|.+.+ ...+||+++|+
T Consensus 25 Yld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~---------~~i~~~~~tt~ 95 (408)
T d1t3ia_ 25 YLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSP---------REIVYTRNATE 95 (408)
T ss_dssp ECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCG---------GGEEEESSHHH
T ss_pred EeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCc---------ccEEeecchHH
Confidence 454444555455555444433333332 22333334444444689999999999754 25889999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH----HCCccEEEEecCCCCCcCHHHHHHHH
Q psy11047 270 STLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL----IGLVNMRYIESDDKLSLRGDKLIEAI 345 (943)
Q Consensus 270 ANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~----LG~~~v~~Vp~D~~grmD~daLe~aI 345 (943)
++..++.......+ .+...|++|+..|.|+.-+.. -.+..++.+|.+.++..+.+.+++++
T Consensus 96 ~~n~~~~~~~~~~~---------------~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~ 160 (408)
T d1t3ia_ 96 AINLVAYSWGMNNL---------------KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLL 160 (408)
T ss_dssp HHHHHHHHTHHHHC---------------CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHC
T ss_pred HHHHHHhhcccccc---------------CCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhcc
Confidence 97666554322110 122358889999998766552 23457899999999999999999988
Q ss_pred HHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCc
Q psy11047 346 ERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPR 425 (943)
Q Consensus 346 ~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~a 425 (943)
.++ +.+|+.++.++.+|.+.|+++|++ +|+++|+ ++||||+++.+ .
T Consensus 161 ~~~------t~lv~i~~~~~~tG~~~p~~~i~~--------------------~~~~~g~-------~~ivDa~q~~g-~ 206 (408)
T d1t3ia_ 161 SEK------TKLVTVVHISNTLGCVNPAEEIAQ--------------------LAHQAGA-------KVLVDACQSAP-H 206 (408)
T ss_dssp CTT------EEEEEEESBCTTTCBBCCHHHHHH--------------------HHHHTTC-------EEEEECTTTTT-T
T ss_pred CCC------ceEEEEecccccccccCcHHHHhh--------------------hhhccCc-------eeeeccceecc-c
Confidence 765 789999999999999999999999 9999999 99999999877 3
Q ss_pred cccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh---hhcccC
Q psy11047 426 FEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH---RTFNVE 502 (943)
Q Consensus 426 feLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~---~af~~~ 502 (943)
. | . .... -.+|.+++++|||++-+....+. +.+...
T Consensus 207 ~--~---------------------------------i-d~~~-----~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~~ 245 (408)
T d1t3ia_ 207 Y--P---------------------------------L-DVQL-----IDCDWLVASGHKMCAPTGIGFLYGKEEILEAM 245 (408)
T ss_dssp S--C---------------------------------C-CHHH-----HTCSEEEEEGGGTTSCTTCEEEEECHHHHHHS
T ss_pred c--c---------------------------------c-cccc-----cCCceEEeccccccCCCCccccccchhhhhcC
Confidence 2 1 1 1111 15799999999998733222220 111223
Q ss_pred ccccccCCCCcccccCcccc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccccc
Q psy11047 503 PLYLRHENSGLAIDYMHWQI-PLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGF 581 (943)
Q Consensus 503 p~YL~~~~~g~~~d~~~~ti-e~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~ 581 (943)
++++.............++. ...+|+++. +....+..|+.+.++.+.+ .|.+.|+++
T Consensus 246 ~p~~~g~~~~~~~~~~~~~~~~~~~r~e~G----t~~~~~~~~l~~al~~~~~---------------~g~~~i~~~--- 303 (408)
T d1t3ia_ 246 PPFFGGGEMIAEVFFDHFTTGELPHKFEAG----TPAIAEAIALGAAVDYLTD---------------LGMENIHNY--- 303 (408)
T ss_dssp CCCSCSTTSEEEECSSCEEECCTTGGGCCS----SCCHHHHHHHHHHHHHHHH---------------HCHHHHHHH---
T ss_pred CceecCCcccccccccccccCCchhhhcCC----cHHHHHHHHHHHHHHHHHH---------------cCHHHHHHH---
Confidence 44443221100011111111 233445431 3333444455555554321 244444332
Q ss_pred ccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC-----CCccEEEEEecCCChHHHHHHHHHhccCcEE
Q psy11047 582 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA-----RHLGMVVIRLLGENILTEKLLKRLNSKGRLH 656 (943)
Q Consensus 582 ~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~-----~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~ 656 (943)
..+|++++.+.+...+++.+..+ ...++|+|.+++.+ .+.+.+.|.++|. .
T Consensus 304 ---------------------~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~--~~~v~~~L~~~gI-~ 359 (408)
T d1t3ia_ 304 ---------------------EVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLH--ASDVATMVDQDGI-A 359 (408)
T ss_dssp ---------------------HHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBC--HHHHHHHHHTTTE-E
T ss_pred ---------------------HHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCCC--HHHHHHHHhhCCc-E
Confidence 46788999999999999999863 24789999998765 5678888888874 4
Q ss_pred Eeec---------ccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 657 CVPA---------SLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 657 ~s~t---------~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
++.- .....+++|+++++++|++||+++++.|+++.+.
T Consensus 360 v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 360 IRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp CBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 4311 1234678999999999999999999999988653
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=6e-21 Score=210.56 Aligned_cols=322 Identities=12% Similarity=0.025 Sum_probs=212.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec
Q psy11047 228 ACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307 (943)
Q Consensus 228 aateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S 307 (943)
.++++-.++++.+|+++|.... ...+||+|+|+|+...+........ . +.-.|+++
T Consensus 63 ~~~~~~e~~R~~ia~~l~~~~~---------~~i~~~~~~T~~~~~~~~~~~~~~~------~---------~g~~il~~ 118 (405)
T d1jf9a_ 63 QATEKMENVRKRASLFINARSA---------EELVFVRGTTEGINLVANSWGNSNV------R---------AGDNIIIS 118 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCG---------GGEEEESSHHHHHHHHHHHHHHHHC------C---------TTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCc---------ccccccCcHHHHHHHHHhccccccc------C---------CCCEEEEE
Confidence 3444445789999999997543 2689999999998776654322110 1 22357889
Q ss_pred CCCchHHHHHHH-H---CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 308 DQAHSSVEKAGL-I---GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 308 ~~aHySv~KAa~-L---G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+..|.|...+.. + .+.+++.+|++.+|.+|++.++.++.++ +.+|+.++.++.+|.+.|+++|++
T Consensus 119 ~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~~~------t~lv~~~~v~~~tG~~~pi~~i~~----- 187 (405)
T d1jf9a_ 119 QMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEK------TRLLAITHVSNVLGTENPLAEMIT----- 187 (405)
T ss_dssp TTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTT------EEEEEEESBCTTTCCBCCHHHHHH-----
T ss_pred eCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhccCC------cEEEEEecCCCcccccCchHHhhh-----
Confidence 999999766652 2 2358999999999999999999887765 789999999999999999999999
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccc
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHC 463 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~ 463 (943)
+|+++|+ ++||||+++.+ .. | .
T Consensus 188 ---------------~~~~~g~-------~~~vD~~q~~g-~~--~---------------------------------i 209 (405)
T d1jf9a_ 188 ---------------LAHQHGA-------KVLVDGAQAVM-HH--P---------------------------------V 209 (405)
T ss_dssp ---------------HHHHTTC-------EEEEECTTTTT-TS--C---------------------------------C
T ss_pred ---------------HHHHcCC-------eeecccceecc-cc--c---------------------------------c
Confidence 9999999 99999999877 32 1 1
Q ss_pred cchhhhhcCCCCeeEEEEcCCCccCccCcchhh---hhcccCccccccCCCCcccccCc--cccCCCCCcchHHHHHHHH
Q psy11047 464 VPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH---RTFNVEPLYLRHENSGLAIDYMH--WQIPLSKRFRALKLWFVIR 538 (943)
Q Consensus 464 p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~---~af~~~p~YL~~~~~g~~~d~~~--~tie~SRrfrALklW~tLr 538 (943)
.... -.+|.+++++|||++.+..+.+. +.+...+++..........+..+ ......+|+++. +..
T Consensus 210 -d~~~-----~~~D~~~~s~hK~~Gp~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~G----T~~ 279 (405)
T d1jf9a_ 210 -DVQA-----LDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAG----TPN 279 (405)
T ss_dssp -CHHH-----HTCSEEEEEGGGTTSCSSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCS----SCC
T ss_pred -chhh-----cCCceeeccccccccCCCceeeeechhhhcccCcccccccccCccccccccccccchhhhcCC----CCc
Confidence 1111 15799999999998733222210 11111111211111000011111 111334444431 333
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCC
Q psy11047 539 NFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDP 618 (943)
Q Consensus 539 ~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p 618 (943)
..+..++.+.++...+ .|.+.|.+. ...|++++.+.+...+
T Consensus 280 ~~~~~~l~~al~~~~~---------------~g~~~i~~~------------------------~~~L~~~~~~~l~~~~ 320 (405)
T d1jf9a_ 280 TGGIIGLGAALEYVSA---------------LGLNNIAEY------------------------EQNLMHYALSQLESVP 320 (405)
T ss_dssp HHHHHHHHHHHHHHHH---------------HCHHHHHHH------------------------HHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHH---------------hChHHHHHH------------------------HHHHHHHHHhhhhcCC
Confidence 3334444444444211 233333322 3567888888999998
Q ss_pred CeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEEeec---------ccCCCcEEEEeecCCCCHHHHHHHHHHH
Q psy11047 619 RFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA---------SLRIQGLGRAQNFTRTTNDDITRDWNEI 688 (943)
Q Consensus 619 ~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t---------~~~g~~~lR~v~~~~tt~edId~ll~~I 688 (943)
...+..+ ...++++|.+++.+ .+.+...|...|. .++.. .....+++|+++++++|.+||++++++|
T Consensus 321 ~~~~~~~~~r~~ivsf~~~~~~--~~~~~~~L~~~gI-~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l 397 (405)
T d1jf9a_ 321 DLTLYGPQNRLGVIAFNLGKHH--AYDVGSFLDNYGI-AVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGL 397 (405)
T ss_dssp TEEEESCTTCCSEEEEEETTCC--HHHHHHHHHHTTE-ECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHH
T ss_pred cccccCCcCcCcEEEEEcCCCC--HHHHHHHHHHCCc-EEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 8888764 35899999998765 4667777877775 33311 1234678999999999999999999999
Q ss_pred HHHHHH
Q psy11047 689 RNTATE 694 (943)
Q Consensus 689 ~~~~~~ 694 (943)
+++.+-
T Consensus 398 ~~i~r~ 403 (405)
T d1jf9a_ 398 QRIHRL 403 (405)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988654
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.86 E-value=1.9e-20 Score=202.48 Aligned_cols=322 Identities=12% Similarity=0.052 Sum_probs=198.5
Q ss_pred CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcC
Q psy11047 220 GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEIN 299 (943)
Q Consensus 220 ~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~ 299 (943)
...+..+.....+..++.+.+|+++|.+.+ ..+||+|||+|+.+++.+.+. .
T Consensus 39 ~~~~~~~~~~~~~~~~~r~~la~~~~~~~~----------~i~~~~g~t~a~~~~~~~l~~---------~--------- 90 (381)
T d1elua_ 39 PFSIAANQHIQQLIAQLRQALAETFNVDPN----------TITITDNVTTGCDIVLWGLDW---------H--------- 90 (381)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTTSCGG----------GEEEESSHHHHHHHHHHHSCC---------C---------
T ss_pred CccchhhHHHHHHHHHHHHHHHHHhCCCcc----------cEEEECChHHHhhhcchhhhh---------c---------
Confidence 334445556666667889999999999764 689999999998777654210 1
Q ss_pred CceEEEecCCCchHHHHHHH-H---CCccEEEEecCCCCCcC--HHHHHHHHHHhhccCCCcEEEEEecCCCcccccccH
Q psy11047 300 SRLVAYCSDQAHSSVEKAGL-I---GLVNMRYIESDDKLSLR--GDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSY 373 (943)
Q Consensus 300 ~~~vV~~S~~aHySv~KAa~-L---G~~~v~~Vp~D~~grmD--~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL 373 (943)
+...|++++..|.|+..++. + .+..++.+|.+.....+ .+.++++++.+ +.+++.+..++.+|.+.|+
T Consensus 91 ~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~------t~~v~i~~~~n~tG~~~~~ 164 (381)
T d1elua_ 91 QGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPK------TRLVILSHLLWNTGQVLPL 164 (381)
T ss_dssp TTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTT------EEEEEEESBCTTTCCBCCH
T ss_pred CCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhccc------ccccccccccccccccchh
Confidence 22346778999999877652 2 34578888876554443 34444444433 7899999999999999999
Q ss_pred HHhhhhccccccccccccccCchHHHHHHc----CCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHH
Q psy11047 374 CCLGTAMIVKGLGFYKMKLQTNFPNFILSY----FPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTE 449 (943)
Q Consensus 374 ~eIa~~~~~~d~~~~~i~L~RrfR~iar~~----Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~ 449 (943)
++|.+ +|+++ |+ ++|+||+++.. .. |.
T Consensus 165 ~~I~~--------------------l~~~~~~~~~~-------~~~vD~~~~~g-~~--~~------------------- 195 (381)
T d1elua_ 165 AEIMA--------------------VCRRHQGNYPV-------RVLVDGAQSAG-SL--PL------------------- 195 (381)
T ss_dssp HHHHH--------------------HHHHCCSSSCC-------EEEEECTTTBT-TB--CC-------------------
T ss_pred hHHHH--------------------HHhhccccccc-------ccccccccccc-cc--cc-------------------
Confidence 99999 99985 56 99999999765 22 10
Q ss_pred HHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCc-chh--hh--hcccCccccccCCC--CcccccCcccc
Q psy11047 450 KLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNS-GAL--HR--TFNVEPLYLRHENS--GLAIDYMHWQI 522 (943)
Q Consensus 450 kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~-~~L--~~--af~~~p~YL~~~~~--g~~~d~~~~ti 522 (943)
. +.. ..+|.+++++|||++.+.+ +.+ .. .....|.+...... +...+...+.
T Consensus 196 ------------~-------~~~-~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~- 254 (381)
T d1elua_ 196 ------------D-------FSR-LEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWA- 254 (381)
T ss_dssp ------------C-------TTT-SCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEEC-
T ss_pred ------------c-------ccc-cccccccccccccccccchhhHHHhhHHHHHhcCccccccccccccccccccccc-
Confidence 0 111 2689999999999983222 111 00 00122322221100 0000000011
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHH
Q psy11047 523 PLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQ 602 (943)
Q Consensus 523 e~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~ 602 (943)
...+++... +....+.-++.+.++.... .|....+ .+ +
T Consensus 255 ~~~~~~~~g----t~~~~~~~~~~~a~~~~~~---------------~g~~~~~----~~-------------------~ 292 (381)
T d1elua_ 255 EGGKRFEVA----TSAYPQYAGLLAALQLHQR---------------QGTAEER----YQ-------------------A 292 (381)
T ss_dssp SGGGGGCCS----CCCHHHHHHHHHHHHHHHH---------------HCCHHHH----HH-------------------H
T ss_pred ccccccccc----cccchhhhhhhhhhhhHHH---------------hcccccc----hh-------------------h
Confidence 111111110 1111111222222222110 0000000 00 0
Q ss_pred HHHHHHHHHHHHhCCCCeEEecC--CCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHH
Q psy11047 603 SVRLAQKFEALVLGDPRFEIPAA--RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDD 680 (943)
Q Consensus 603 ~~~LA~~l~~~L~~~p~~eIl~~--~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~ed 680 (943)
..++++++.+.|+++|+++++.+ +..++|+|++.+.. -.+.+.+.|.++|. ++.. ...++++|++++.+||.+|
T Consensus 293 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~~-~~~~i~~~L~~~gi-~v~~--~~~~~~lRis~~~~nt~ed 368 (381)
T d1elua_ 293 ICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPL-GHRAIVQKLEEQRI-YLRT--IADPDCIRACCHYITDEEE 368 (381)
T ss_dssp HHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSS-CHHHHHHHHHHTTE-ECEE--ETTTTEEEEECCTTCCHHH
T ss_pred hhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcCCCC-CHHHHHHHHHhCCc-EEEe--cCCCCEEEEecCCCCCHHH
Confidence 35678899999999999999863 57889999997643 24677888888885 3432 3456899999999999999
Q ss_pred HHHHHHHHHHH
Q psy11047 681 ITRDWNEIRNT 691 (943)
Q Consensus 681 Id~ll~~I~~~ 691 (943)
|+++++.|+++
T Consensus 369 id~ll~~l~e~ 379 (381)
T d1elua_ 369 INHLLARLADF 379 (381)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhh
Confidence 99999999875
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=5.9e-18 Score=183.84 Aligned_cols=310 Identities=13% Similarity=0.057 Sum_probs=196.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec
Q psy11047 228 ACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307 (943)
Q Consensus 228 aateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S 307 (943)
.++++-.++++.+|+++|.+.+ ..+||+|+|+++..++.+.....++ + .-.|+++
T Consensus 45 ~~~~~~~~~R~~iA~~lg~~~~----------~I~~~~~~t~~l~~~~~~~~~~~~~------~---------gd~Vv~~ 99 (391)
T d1p3wa_ 45 QAEEAVDIARNQIADLVGADPR----------EIVFTSGATESDNLAIKGAANFYQK------K---------GKHIITS 99 (391)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGG----------GEEEESSHHHHHHHHHHHHHHHHGG------G---------CCEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCC----------cEEEECCHHHHHHHHHhhhhhhhcC------C---------CCEEEEe
Confidence 4455555788999999999865 6899999999988777765433221 1 2357889
Q ss_pred CCCchHHHHHHH---HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 308 DQAHSSVEKAGL---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 308 ~~aHySv~KAa~---LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
+..|.|+..+.. ..+..++.+|.+.+|.+|+++++++|+++ +.+|+.+..++.+|.+.|+++|++
T Consensus 100 ~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~------T~lv~is~~~n~tG~~~~~~~I~~------ 167 (391)
T d1p3wa_ 100 KTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDD------TILVSIMHVNNEIGVVQDIAAIGE------ 167 (391)
T ss_dssp TTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTT------EEEEECCSBCTTTCCBCCHHHHHH------
T ss_pred ccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCCCC------cEEEEEECCCCCCeeECCHHHHHH------
Confidence 999999866552 34568999999999999999999999765 788999999999999999999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccccc
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV 464 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p 464 (943)
+|+++|+ ++++|++++.+ .. |. ...
T Consensus 168 --------------~~~~~~~-------~~ivD~~~~~g-~~--~~-------------------------------d~~ 192 (391)
T d1p3wa_ 168 --------------MCRARGI-------IYHVDATQSVG-KL--PI-------------------------------DLS 192 (391)
T ss_dssp --------------HHHHHTC-------EEEEECTTTBT-TB--CC-------------------------------CTT
T ss_pred --------------HhccCCc-------EEEEeeccccC-Cc--cc-------------------------------cch
Confidence 9999999 99999999766 22 10 011
Q ss_pred chhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCC---CCcccccCccccCCCCCcchHHHHHHHHHHH
Q psy11047 465 PASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHEN---SGLAIDYMHWQIPLSKRFRALKLWFVIRNFG 541 (943)
Q Consensus 465 ~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~---~g~~~d~~~~tie~SRrfrALklW~tLr~~G 541 (943)
. ..+|.+.+++|||++......+ .....++.... .|+.. ....+.+ ......+..+
T Consensus 193 -------~-~~~D~~~~s~~k~~g~~g~g~~----~~~~~~~~~~~~~~~gg~~---~~~~~~~--~~~~~~~~~l---- 251 (391)
T d1p3wa_ 193 -------Q-LKVDLMSFSGHKIYGPKGIGAL----YVRRKPRVRIEAQMHGGGH---ERGMRSG--TLPVHQIVGM---- 251 (391)
T ss_dssp -------T-SCCSEEEEESTTTTSCSSCEEE----EECBTTBCCCCCSSCSSCT---TTTTSCS--CCCHHHHHHH----
T ss_pred -------h-ccccccccccccccCCCceEEE----EEecchhcccCCcccCCcc---ccCcccC--cchhhhhhhh----
Confidence 1 2579999999999884332221 01111111100 01000 0001000 0111111111
Q ss_pred HHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeE
Q psy11047 542 IKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 621 (943)
Q Consensus 542 ~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~e 621 (943)
...++...+. .... .++ ...++.++.+.|.+++...
T Consensus 252 ----~~~~~~~~~~---------------~~~~------~~~-------------------~~~~~~~l~~~L~~~~~~~ 287 (391)
T d1p3wa_ 252 ----GEAYRIAKEE---------------MATE------MER-------------------LRGLRNRLWNGIKDIEEVY 287 (391)
T ss_dssp ----HHHHHHHHHH---------------HHHH------HHH-------------------HHHHHHHHHHTTTTSTTEE
T ss_pred ----hhhhhHHHHH---------------hhHH------HHH-------------------HHHHHHHHHHHHHhhcCee
Confidence 1111111000 0000 000 2456778888888888877
Q ss_pred EecC---CCccEEEEEecCCChHHHHHHHHHhc----cCcEEEeecccC--------------CCcEEEEeecCCCCHHH
Q psy11047 622 IPAA---RHLGMVVIRLLGENILTEKLLKRLNS----KGRLHCVPASLR--------------IQGLGRAQNFTRTTNDD 680 (943)
Q Consensus 622 Il~~---~~l~iV~Fr~~g~n~l~~~Ll~~L~~----~G~~~~s~t~~~--------------g~~~lR~v~~~~tt~ed 680 (943)
+... ....+++|...+.+ ...+...+.. .| .+|++.... ..+++|+++++++|.+|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~i~v~~G-~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~ed 364 (391)
T d1p3wa_ 288 LNGDLEHGAPNILNVSFNYVE--GESLIMALKDLAVSSG-SACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 364 (391)
T ss_dssp ECSCTTTSCTTEEEEEETTSC--HHHHHHHTTTEECBCC-CC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHH
T ss_pred ecccccccCceEEEEEeCCCC--hHHHHHHhCCCEEEcc-ccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHH
Confidence 7543 24677888887654 3455555532 22 233221111 13579999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11047 681 ITRDWNEIRNTATEILA 697 (943)
Q Consensus 681 Id~ll~~I~~~~~~ll~ 697 (943)
|++++++|+++...+.+
T Consensus 365 id~l~~~l~~~l~~lr~ 381 (391)
T d1p3wa_ 365 IDYTIELVRKSIGRLRD 381 (391)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887554
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.79 E-value=5.2e-19 Score=182.03 Aligned_cols=323 Identities=11% Similarity=0.041 Sum_probs=203.0
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
.|.++..|.....+ ....|..+|... ++.+++|+++|.+. ..+||+|||+||+.|+.+++.
T Consensus 16 ~P~v~~A~~~a~~~-~~~~~~~~~~~~----~l~~~la~~~g~~~-----------~v~f~~sGt~An~~a~~~~~~--- 76 (345)
T d1v72a1 16 SPEVAQALVKHSSG-QAGPYGTDELTA----QVKRKFCEIFERDV-----------EVFLVPTGTAANALCLSAMTP--- 76 (345)
T ss_dssp CHHHHHHHHHTTSS-CCCSTTCSHHHH----HHHHHHHHHHTSCC-----------EEEEESCHHHHHHHHHHTSCC---
T ss_pred CHHHHHHHHHHhcc-CccccCCCHHHH----HHHHHHHHHHCCCc-----------EEEECCchHHHHHHHHHHHHh---
Confidence 56777655443222 234455555544 55667899999864 578999999999999876531
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHH---HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcE--EE
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG---LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPF--FI 358 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa---~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~--~V 358 (943)
....++.....|+++...+ .++...+..++.+.++.++++.+++.+.........+. ++
T Consensus 77 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 140 (345)
T d1v72a1 77 ----------------PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACV 140 (345)
T ss_dssp ----------------TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEE
T ss_pred ----------------cCCccccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceee
Confidence 1223567888999987765 24566788888888999999999999987654333344 33
Q ss_pred EEecCCCc--ccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccce
Q psy11047 359 FSGLALPA--FLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGM 436 (943)
Q Consensus 359 VaTaGTT~--tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~ 436 (943)
..+.++.. .+.++++.++.. +|++||+ |+|+|+++++. .. +..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~i~~--------------------~~~~~~~-------~~~~D~~~~~~-~~--~~~----- 185 (345)
T d1v72a1 141 SITQATEVGSIYTLDEIEAIGD--------------------VCKSSSL-------GLHMDGSRFAN-AL--VSL----- 185 (345)
T ss_dssp EEESSCTTSCCCCHHHHHHHHH--------------------HHHHTTC-------EEEEEETTHHH-HH--HHH-----
T ss_pred eeeccccccccccchhhhhHHH--------------------HHHhcCc-------eeeecccccce-ec--ccc-----
Confidence 33333333 234567888888 9999999 99999998765 21 000
Q ss_pred eeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccc
Q psy11047 437 VVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAID 516 (943)
Q Consensus 437 VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d 516 (943)
... ... .......+.++..+||+++......... ...+.... .
T Consensus 186 -------------------------~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~ 228 (345)
T d1v72a1 186 -------------------------GCS-PAE-MTWKAGVDALSFGATKNGVLAAEAIVLF----NTSLATEM------S 228 (345)
T ss_dssp -------------------------TCC-TTT-TTGGGTCCEEEECCGGGTCSSCEEEEES----SGGGHHHH------H
T ss_pred -------------------------ccC-HHH-hhccccccccccCccccccccccccccc----hhhhhhhc------c
Confidence 000 000 0111346788888888777332221100 00000000 0
Q ss_pred cCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccc
Q psy11047 517 YMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS 596 (943)
Q Consensus 517 ~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~ 596 (943)
........+-...+...+.....++...+.+...+
T Consensus 229 ~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~--------------------------------------------- 263 (345)
T d1v72a1 229 YRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARK--------------------------------------------- 263 (345)
T ss_dssp HHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHH---------------------------------------------
T ss_pred ccccccccccchhhHHhhhhHHHHHHhhhhhhccc---------------------------------------------
Confidence 00001111222223333334444443333333333
Q ss_pred cCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCC
Q psy11047 597 YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRT 676 (943)
Q Consensus 597 ~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~t 676 (943)
..++++++.+.+.+.|++++..+...|+|+|++. ..+.++|.++|..+. +...+++.+|+++++.|
T Consensus 264 ------~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~------~~~~~~L~~~gi~v~--~~~~~~~~lR~~~~~~~ 329 (345)
T d1v72a1 264 ------ANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD------SAMIDALLKAGFGFY--HDRWGPNVVRFVTSFAT 329 (345)
T ss_dssp ------HHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC------HHHHHHHHHTTCBCB--CSSSSTTEEEEECCTTC
T ss_pred ------hhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcC------HHHHHHHHHcCCCcc--ccCCCCCEEEEECCCCC
Confidence 3467778888999999999999999999999974 456778888886432 23346789999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy11047 677 TNDDITRDWNEIRNTA 692 (943)
Q Consensus 677 t~edId~ll~~I~~~~ 692 (943)
|+||||+++++|+++|
T Consensus 330 T~edid~~le~lr~aa 345 (345)
T d1v72a1 330 TAEDVDHLLNQVRLAA 345 (345)
T ss_dssp CHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999998753
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.77 E-value=5.3e-18 Score=183.82 Aligned_cols=318 Identities=11% Similarity=-0.017 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
++...+++.+|+++|.+++ ..+||+++|++++..+..+-..... . .+ ... +++++..
T Consensus 70 ~~~e~~R~~iA~llga~~~----------ei~~~~~~T~~~~~~~~~~~~~~~~-~---~~--------~~~-vi~~~~~ 126 (404)
T d1qz9a_ 70 DLSERLGNRLATLIGARDG----------EVVVTDTTSINLFKVLSAALRVQAT-R---SP--------ERR-VIVTETS 126 (404)
T ss_dssp GHHHHHHHHHHTTTTCCTT----------SEEECSCHHHHHHHHHHHHHHHHHH-H---ST--------TCC-EEEEETT
T ss_pred HHHHHHHHHHHHHhCCCCC----------cEEEecCchHHHHHHhhhhhhhhcc-c---CC--------CcE-EEEeccc
Confidence 4556799999999999875 6899999999987766544321111 0 11 122 4456667
Q ss_pred chHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccc
Q psy11047 311 HSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 311 HySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i 390 (943)
|++...+..-...++..++.+.++..+++.++++|+++ +.+|+.++.++.+|.+.|+++|++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------T~lV~i~~v~~~tG~~~pv~~i~~------------ 188 (404)
T d1qz9a_ 127 NFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQD------TAVVMLTHVNYKTGYMHDMQALTA------------ 188 (404)
T ss_dssp SCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHCSTT------EEEEEEESBCTTTCBBCCHHHHHH------------
T ss_pred cchHHHHHHhhhheeeeeceeccccccchhHHHhcCCC------ceEEEEecccccccceecHHHHhc------------
Confidence 77655444211112233333445667788888888766 789999999999999999999999
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhh
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRI 470 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l 470 (943)
+|+++|+ ++||||+++.+ .+.+ ....
T Consensus 189 --------~~~~~~~-------~~~vD~~q~~g-~~~~------------------------------------~~~~-- 214 (404)
T d1qz9a_ 189 --------LSHECGA-------LAIWDLAHSAG-AVPV------------------------------------DLHQ-- 214 (404)
T ss_dssp --------HHHHHTC-------EEEEECTTTTT-TSCC------------------------------------CHHH--
T ss_pred --------ccccccc-------ceeEEeecccc-cccc------------------------------------cccc--
Confidence 9999999 99999999877 3311 0111
Q ss_pred cCCCCeeEEEEcCCCccCccCc--chhh---hhcccCcc-ccccC-CCCcccccCcccc-CCCCCcchHHHHHHHHHHHH
Q psy11047 471 QGLGRAQNFTIVPSSLLRVKNS--GALH---RTFNVEPL-YLRHE-NSGLAIDYMHWQI-PLSKRFRALKLWFVIRNFGI 542 (943)
Q Consensus 471 ~Gie~ADSItiDpHK~L~vr~~--~~L~---~af~~~p~-YL~~~-~~g~~~d~~~~ti-e~SRrfrALklW~tLr~~G~ 542 (943)
..+|.+++++|||++.... ..+. ......+. ..... ..........+.. .+.+++... +....+.
T Consensus 215 ---~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 287 (404)
T d1qz9a_ 215 ---AGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCG----TQPITSL 287 (404)
T ss_dssp ---HTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCS----CCCHHHH
T ss_pred ---ccceEEEEechhhcccCCceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhh----hccchhH
Confidence 1579999999999872221 1110 00000110 10000 0000001111111 222222211 1222233
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEE
Q psy11047 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI 622 (943)
Q Consensus 543 ~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eI 622 (943)
.+....++...+ .|.+.|++... ....+...+...+...+++++
T Consensus 288 ~~~~~~~~~~~~---------------~~~~~i~~~~~---------------------~~~~~~~~l~~~~~~~~~~~i 331 (404)
T d1qz9a_ 288 AMVECGLDVFAQ---------------TDMASLRRKSL---------------------ALTDLFIELVEQRCAAHELTL 331 (404)
T ss_dssp HHHHHHHHHHTT---------------SCHHHHHHHHH---------------------HHHHHHHHHHHHHHTTSCCEE
T ss_pred HHHHHHHHHHHH---------------hhHHHHHHHHH---------------------HhHHHHHHHHHhhccCCCEEE
Confidence 333444443211 22333322110 022333445556677899999
Q ss_pred ecCC----CccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeec-CCCCHHHHHHHHHHHHHHHHH
Q psy11047 623 PAAR----HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNF-TRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 623 l~~~----~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~-~~tt~edId~ll~~I~~~~~~ 694 (943)
+.+. ..++|+|++++ ...+.++|.++|. +++ .+.+++||++++ .+||.+||+++++.|+++.++
T Consensus 332 ~~p~~~~~r~~~vsf~~~~----~~~v~~~L~~~gi-~~~---~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 332 VTPREHAKRGSHVSFEHPE----GYAVIQALIDRGV-IGD---YREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp CSCSSGGGBCSEEEEECTT----HHHHHHHHHTTTE-ECE---EETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCccceeeEEEEecCC----HHHHHHHHHHCCC-EEe---ecCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 8754 36899999874 5678889988885 333 345679999874 589999999999999887653
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=1e-15 Score=164.89 Aligned_cols=304 Identities=11% Similarity=0.062 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
+.++-.++++.+|+++|.+++ ..+|++|+|+++..++........ .++-+++.+.
T Consensus 42 ~~~~~~~aR~~ia~l~~~~~~----------~i~~~~~~T~~l~~~~~~~~~~~~---------------~~g~~v~~~~ 96 (376)
T d1eg5a_ 42 ANLHMEKAREKVAKVLGVSPS----------EIFFTSCATESINWILKTVAETFE---------------KRKRTIITTP 96 (376)
T ss_dssp HHHHHHHHHHHHHHHHTSCGG----------GEEEESCHHHHHHHHHHHHHHHTT---------------TTCCEEEECT
T ss_pred HHHHHHHHHHHHHHHcCCCCC----------cEEEECCHHHHHHhhhhccccccc---------------ccCccccccc
Confidence 344334678999999999865 689999999997776654321100 1223466677
Q ss_pred CCchHHHHHHH-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccc
Q psy11047 309 QAHSSVEKAGL-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGL 385 (943)
Q Consensus 309 ~aHySv~KAa~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~ 385 (943)
..|.+..-+.. + -+.+++.||++.+|++|+++++++|+++ +.+|+.++.++.+|.+.|++++++
T Consensus 97 ~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~------t~lv~is~v~~~tG~~~~~~~i~~------- 163 (376)
T d1eg5a_ 97 IEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDED------TFLVSIMAANNEVGTIQPVEDVTR------- 163 (376)
T ss_dssp TSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHH-------
T ss_pred ccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcCCC------ceEEEEECCccccceeeeehhhhh-------
Confidence 77776655442 2 3458999999999999999999999775 789999999999999999999999
Q ss_pred ccccccccCchHHHHHHc--CCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccc
Q psy11047 386 GFYKMKLQTNFPNFILSY--FPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHC 463 (943)
Q Consensus 386 ~~~~i~L~RrfR~iar~~--Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~ 463 (943)
+++.+ |. .+.|||+++.+ .. |. ..
T Consensus 164 -------------~~~~~~~~~-------~~~vD~~q~~g-~~--~~-------------------------------d~ 189 (376)
T d1eg5a_ 164 -------------IVKKKNKET-------LVHVDAVQTIG-KI--PF-------------------------------SL 189 (376)
T ss_dssp -------------HHHHHCTTC-------EEEEECTTTTT-TS--CC-------------------------------CC
T ss_pred -------------hhhhcccCc-------eeEEEeeeccc-cc--cc-------------------------------cc
Confidence 88666 66 89999998776 22 10 01
Q ss_pred cchhhhhcCCCCeeEEEEcCCCccCccCcchhh--hhcccCccccccCCCCcccccCcccc-CCCCCcchHHHHHHHHHH
Q psy11047 464 VPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH--RTFNVEPLYLRHENSGLAIDYMHWQI-PLSKRFRALKLWFVIRNF 540 (943)
Q Consensus 464 p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~--~af~~~p~YL~~~~~g~~~d~~~~ti-e~SRrfrALklW~tLr~~ 540 (943)
. . ..+|.+++++|||++.+....+. ......|.+.... . .... .+.....+..........
T Consensus 190 ~-------~-~~~D~~~~s~~K~~gp~G~~~l~~~~~~~~~p~~~g~~-~-------~~~~~~~~~~~~~~~~~~~~~~~ 253 (376)
T d1eg5a_ 190 E-------K-LEVDYASFSAHKFHGPKGVGITYIRKGVPIRPLIHGGG-Q-------ERGLRSGTQNVPGIVGAARAMEI 253 (376)
T ss_dssp T-------T-TCCSEEEEEGGGGTSCTTCEEEEECTTSCCCCSBCSSC-T-------TTTTBCSCCCHHHHHHHHHHHHH
T ss_pred c-------c-cCccceecccceeecCCCceeEEeccCcccCCcccCCC-C-------cccccCCcccchhhhhHHHHhhc
Confidence 1 1 25799999999998733222221 0011122221110 0 0001 111111111000011111
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCe
Q psy11047 541 GIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 620 (943)
Q Consensus 541 G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~ 620 (943)
........... ...+..++.+.+......
T Consensus 254 ~~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~l~~~~~~ 282 (376)
T d1eg5a_ 254 AVEELSEAAKH---------------------------------------------------MEKLRSKLVSGLMNLGAH 282 (376)
T ss_dssp HHHTHHHHHHH---------------------------------------------------HHHHHHHHHHHHHTTTCE
T ss_pred cccchhhhhhh---------------------------------------------------hhhhhhhhcccccccccc
Confidence 11111111111 233455666666665544
Q ss_pred EEec--CCCccEEEEEecCCChHHHHHHHHHhccCcE-----EEeeccc--------CC------CcEEEEeecCCCCHH
Q psy11047 621 EIPA--ARHLGMVVIRLLGENILTEKLLKRLNSKGRL-----HCVPASL--------RI------QGLGRAQNFTRTTND 679 (943)
Q Consensus 621 eIl~--~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~-----~~s~t~~--------~g------~~~lR~v~~~~tt~e 679 (943)
.+.. ....+++.|++.+.+ ...+...|..+|.. +|.+... .| .+++|+++++++|.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~e 360 (376)
T d1eg5a_ 283 IITPLEISLPNTLSVSFPNIR--GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEE 360 (376)
T ss_dssp ECSCTTSBCTTEEEEECTTCC--HHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHH
T ss_pred ccccccccccceeeeccCCCC--HHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHH
Confidence 4422 446788899988765 46666677776642 2221110 01 357999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy11047 680 DITRDWNEIRNTAT 693 (943)
Q Consensus 680 dId~ll~~I~~~~~ 693 (943)
|||++++.|+++..
T Consensus 361 did~l~~~L~~iv~ 374 (376)
T d1eg5a_ 361 EVDYFLKKIEEILS 374 (376)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999865
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.73 E-value=3.3e-16 Score=166.35 Aligned_cols=128 Identities=12% Similarity=0.065 Sum_probs=105.2
Q ss_pred HHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHH
Q psy11047 237 MNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEK 316 (943)
Q Consensus 237 i~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~K 316 (943)
.+.+|+++|.++ .++|+|||+||+.++.+-- .|| -.|++++.+|+|+..
T Consensus 53 ~~~~A~~~g~e~------------~~~t~g~t~a~~~~~~al~----------~~g---------d~Vi~~~~~h~s~~~ 101 (364)
T d2e7ja1 53 HNQLPKFLGCDV------------ARVTNGAREAKFAVMHSLA----------KKD---------AWVVMDENCHYSSYV 101 (364)
T ss_dssp HTHHHHHTTSSE------------EEEESSHHHHHHHHHHHHC----------CTT---------CEEEEETTCCHHHHH
T ss_pred HHHHHHHhCcCE------------EEEECcHHHHHHHHHHHHh----------CCC---------cEEEeecccccccch
Confidence 345688999753 6899999999998876521 122 357889999999999
Q ss_pred HHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 317 AGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 317 Aa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
++.+.+.++..+|++ .++.+|++++++.|++...++ .+.+|+.+..++.+|.+.|+++|++
T Consensus 102 ~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~-~~~lv~i~~~~n~tG~~~~l~~I~~---------------- 164 (364)
T d2e7ja1 102 AAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRG-EVVLALITYPDGNYGNLPDVKKIAK---------------- 164 (364)
T ss_dssp HHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTS-CEEEEEEESSCTTTCCCCCHHHHHH----------------
T ss_pred HHHhccceEEEeeeccccccccCHHHHHhhhhhhcccC-CceEEEeecCCCCCceeecchhhee----------------
Confidence 986655588899876 467999999999999876544 3678888899999999999999999
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++|+|+||+..
T Consensus 165 ----ia~~~~i-------~livD~a~~~g 182 (364)
T d2e7ja1 165 ----VCSEYDV-------PLLVNGAYAIG 182 (364)
T ss_dssp ----HHHTTTC-------CEEEECTTTBT
T ss_pred ----ccccccc-------hhhccccchhh
Confidence 9999999 99999999765
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.5e-16 Score=169.89 Aligned_cols=318 Identities=9% Similarity=-0.001 Sum_probs=189.4
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
-|+...++-.++.+.|++++|.|+++ ..+||+|||+++..++..-. .++ -.+
T Consensus 46 Rs~~f~~i~~ea~~~l~~llg~~~~~---------~ii~~gsgT~a~~~~i~~l~----------~~~---------~~~ 97 (388)
T d1h0ca_ 46 MSKDMYQIMDEIKEGIQYVFQTRNPL---------TLVISGSGHCALEAALVNVL----------EPG---------DSF 97 (388)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCSE---------EEEESSCHHHHHHHHHHHHC----------CSS---------CCE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCc---------EEEEcCcHHHHHHHHHHHhh----------ccC---------Cce
Confidence 56777888889999999999998752 57899999999877766421 111 224
Q ss_pred EecCCCchHHHHHHH--HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 305 YCSDQAHSSVEKAGL--IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 305 ~~S~~aHySv~KAa~--LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
++....|++..-+.. .-...+..++.+..+..|.+++++.+.... +.+|+.++.+|.+|.+.|+++|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~n~tG~i~pi~~i~~---- 168 (388)
T d1h0ca_ 98 LVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHK-----PVLLFLTHGESSTGVLQPLDGFGE---- 168 (388)
T ss_dssp EECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHH----
T ss_pred eeecccceeeeeccccccccccccccccCCccccchHHHHHHhccCC-----cceEEEeeeeeccccccCHHHHHH----
Confidence 455668887544332 122355666677788899999988887653 678999999999999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+|++||+ ++||||+++.+ .+ +
T Consensus 169 ----------------~~~~~g~-------~~~vD~~qs~g-~~--~--------------------------------- 189 (388)
T d1h0ca_ 169 ----------------LCHRYKC-------LLLVDSVASLG-GT--P--------------------------------- 189 (388)
T ss_dssp ----------------HHHTTTC-------EEEEECTTTTT-TS--C---------------------------------
T ss_pred ----------------Hhhcccc-------cceeccccccc-cc--c---------------------------------
Confidence 9999999 99999998765 32 1
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccCccCc--------chhhhhccc----CccccccCCCCcccccCccccCCCCCcch
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLRVKNS--------GALHRTFNV----EPLYLRHENSGLAIDYMHWQIPLSKRFRA 530 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~vr~~--------~~L~~af~~----~p~YL~~~~~g~~~d~~~~tie~SRrfrA 530 (943)
. . ++. -.+|.+++++|||++-+.. ..+...... ...|+.... ..++. .....+++..
T Consensus 190 ~-d----~~~-~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~ 258 (388)
T d1h0ca_ 190 L-Y----MDR-QGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKW---LANFW--GCDDQPRMYH 258 (388)
T ss_dssp C-C----TTT-TTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHH---HHHHT--TCSSSCCCCC
T ss_pred c-c----ccc-cccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccch---hhhhh--hhcccccccc
Confidence 1 0 111 2579999999999982221 111111000 011110000 00000 0011111110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHH
Q psy11047 531 LKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKF 610 (943)
Q Consensus 531 LklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l 610 (943)
. +....+..++.+.++.+.+ .|++.+.++ ..++++++
T Consensus 259 ~----t~~~~~~~~~~~al~~~~~---------------~g~~~~~~~------------------------~~~l~~~l 295 (388)
T d1h0ca_ 259 H----TIPVISLYSLRESLALIAE---------------QGLENSWRQ------------------------HREAAAYL 295 (388)
T ss_dssp S----CCCHHHHHHHHHHHHHHHH---------------HCHHHHHHH------------------------HHHHHHHH
T ss_pred c----cccHHHHHHHHHHHHHHHH---------------hcccccccc------------------------ccchhHHH
Confidence 0 1111112222333332211 122221111 34566677
Q ss_pred HHHHhCCCCeEEecCC---CccEEEEEec-CCChHHHHHHHHHhccCcEEEeec--ccCCCcEEEEe-ecCCCCHHHHHH
Q psy11047 611 EALVLGDPRFEIPAAR---HLGMVVIRLL-GENILTEKLLKRLNSKGRLHCVPA--SLRIQGLGRAQ-NFTRTTNDDITR 683 (943)
Q Consensus 611 ~~~L~~~p~~eIl~~~---~l~iV~Fr~~-g~n~l~~~Ll~~L~~~G~~~~s~t--~~~g~~~lR~v-~~~~tt~edId~ 683 (943)
.+.+.......+..++ ..++++|+++ +.+ ...+.++|..+..+.++.- .+. ..++|++ +++.+|.+||++
T Consensus 296 ~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~~--~~~~~~~L~~~~gI~v~~G~~~~~-~~~iRis~~g~~~t~edid~ 372 (388)
T d1h0ca_ 296 HGRLQALGLQLFVKDPALRLPTVTTVAVPAGYD--WRDIVSYVIDHFDIEIMGGLGPST-GKVLRIGLLGCNATRENVDR 372 (388)
T ss_dssp HHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCC--HHHHHHHHHHHHCEECEECCGGGT-TTEEEEECCGGGCSHHHHHH
T ss_pred HHHHhhcCcccccCCHHHcCCeEEEEECCCCCC--HHHHHHHHHhcCCEEEeCCchhhc-CCEEEEeCCCCCCCHHHHHH
Confidence 7777665332222222 3568899985 333 4677777765533444321 123 3589997 788999999999
Q ss_pred HHHHHHHHHHHH
Q psy11047 684 DWNEIRNTATEI 695 (943)
Q Consensus 684 ll~~I~~~~~~l 695 (943)
++++|+++.+++
T Consensus 373 li~aL~~~L~~l 384 (388)
T d1h0ca_ 373 VTEALRAALQHC 384 (388)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh
Confidence 999999986654
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.66 E-value=6.6e-16 Score=155.72 Aligned_cols=300 Identities=8% Similarity=-0.036 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
++..++++.+|+++|.++. .++||+||||||+.|+..++. +...+......
T Consensus 35 ~~~~~lr~~ia~~~g~~~~----------~v~~tsggtean~~a~~~~~~-------------------~~~~~~~~~~~ 85 (340)
T d1svva_ 35 SHCAKAARLIGELLERPDA----------DVHFISGGTQTNLIACSLALR-------------------PWEAVIATQLG 85 (340)
T ss_dssp HHHHHHHHHHHHHHTCTTS----------EEEEESCHHHHHHHHHHHHCC-------------------TTEEEEEETTS
T ss_pred HHHHHHHHHHHHHhCCCcc----------eEEEcCCHHHHHHHHHHHHhh-------------------hcccccccccc
Confidence 4455688889999999864 689999999999988875421 12235567788
Q ss_pred chHHHHHHH-H-CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc---cHHHhhhhcccccc
Q psy11047 311 HSSVEKAGL-I-GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD---SYCCLGTAMIVKGL 385 (943)
Q Consensus 311 HySv~KAa~-L-G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID---pL~eIa~~~~~~d~ 385 (943)
|++...... . +......+.. .....+.+...+...........+..++.+...++.|.+- ++..+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 157 (340)
T d1svva_ 86 HISTHETGAIEATGHKVVTAPC-PDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISA------- 157 (340)
T ss_dssp HHHHSSTTHHHHTTCCEEEECC-TTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHH-------
T ss_pred ceeeeecccccccceeeeeccc-ccccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhc-------
Confidence 888866542 2 2223333333 3455666666666666655555566666666666777664 4555566
Q ss_pred ccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccc
Q psy11047 386 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP 465 (943)
Q Consensus 386 ~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~ 465 (943)
+|+++|. |+|+|+++++. .+ +... ....
T Consensus 158 -------------~~~~~g~-------~~~~d~a~~~~-~~--~~~~-----------------------------~~~~ 185 (340)
T d1svva_ 158 -------------SCKEHGL-------YLFLDGARLAS-AL--SSPV-----------------------------NDLT 185 (340)
T ss_dssp -------------HHHHHTC-------EEEEECTTHHH-HH--TSTT-----------------------------CCCC
T ss_pred -------------ccccccc-------eeeeeccceee-ee--cccc-----------------------------cccc
Confidence 8999999 99999998765 21 1000 0000
Q ss_pred hhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHH-HHHH
Q psy11047 466 ASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNF-GIKG 544 (943)
Q Consensus 466 ~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~-G~~G 544 (943)
..... ...+.+++.++|.++........ ....+..... ..... ..+....+..++.....+ ...+
T Consensus 186 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~aa~~~~~~~~~ 251 (340)
T d1svva_ 186 LADIA---RLTDMFYIGATKAGGMFGEALII----LNDALKPNAR-----HLIKQ--RGALMAKGWLLGIQFEVLMKDNL 251 (340)
T ss_dssp HHHHH---HHCSEEEEECTTTTCSSCEEEEE----CSGGGCTTHH-----HHHHH--TTCCCTTTHHHHHHHHHHTSTTH
T ss_pred ccccc---ccceeeecCCccccccccccccc----cchhhhhhhh-----hhccc--ccCccchhhHHHHHHHHHhhhhH
Confidence 01111 12467788888877632211110 0000000000 00000 000111111112122111 1222
Q ss_pred HHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEec
Q psy11047 545 LQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPA 624 (943)
Q Consensus 545 l~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~ 624 (943)
+....++ ...+++++...+.. ++++++.
T Consensus 252 ~~~~~~~---------------------------------------------------~~~~~~~~~~~l~~-~g~~~~~ 279 (340)
T d1svva_ 252 FFELGAH---------------------------------------------------SNKMAAILKAGLEA-CGIRLAW 279 (340)
T ss_dssp HHHHHHH---------------------------------------------------HHHHHHHHHHHHHH-TTCCBSS
T ss_pred HHHHHHH---------------------------------------------------HHHHHhhhHHHHhc-CCCeeec
Confidence 2222222 23456666666665 5899998
Q ss_pred CCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 625 ARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 625 ~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
|...|+|.+++.+ ...++|.+++.++..+....+.+++|+++++.+|++|||+++++|+++
T Consensus 280 p~~~~~v~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 280 PSASNQLFPILEN------TMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp CCSSSEECBEEEH------HHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred CCCceEEEEeCCH------HHHHHHHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 9999999988753 445566666665555556677899999999999999999999999874
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.61 E-value=5e-15 Score=164.63 Aligned_cols=138 Identities=10% Similarity=-0.016 Sum_probs=95.1
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..+...+.|+ .+|+++|.+. .+|+++||.+++.|++.|- + .|| -.|
T Consensus 64 ~~~~i~eae~----~~A~~~ga~~------------a~f~~~Gtt~~n~a~i~a~---~------~~g---------d~V 109 (462)
T d1c4ka2 64 HEGPAVAAEK----HAARVYNADK------------TYFVLGGSSNANNTVTSAL---V------SNG---------DLV 109 (462)
T ss_dssp TBTHHHHHHH----HHHHHTTCSE------------EEEESSHHHHHHHHHHHHH---C------CTT---------CEE
T ss_pred CCHHHHHHHH----HHHHHhCCCe------------EEEECCchHHHHHHHHHHh---c------CCC---------CeE
Confidence 3344555555 5699999864 5788888887777765442 1 122 358
Q ss_pred EecCCCchHHHHHHH-HCCc--cEEEEecCCCC--------CcCHHHHHHHHHH---hhccCCCcEEEEEecCCCccccc
Q psy11047 305 YCSDQAHSSVEKAGL-IGLV--NMRYIESDDKL--------SLRGDKLIEAIER---DKKKHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 305 ~~S~~aHySv~KAa~-LG~~--~v~~Vp~D~~g--------rmD~daLe~aI~~---d~~kG~~P~~VVaTaGTT~tGaI 370 (943)
+++..+|.|+..++. ++.. .+..+++|..| .++.+.+++.+.. ..+....+..++.....|..|.+
T Consensus 110 i~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~ 189 (462)
T d1c4ka2 110 LFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTI 189 (462)
T ss_dssp EEETTCCHHHHHHHTTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEE
T ss_pred EecccchHHHHHHHHHHhcCCceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccch
Confidence 899999999999884 5443 34445556555 3445555443322 11223346666667777889999
Q ss_pred ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 371 DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 371 DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.|+++|++ +|++||+ ++|||+|+++.
T Consensus 190 ~dl~~I~~--------------------ia~~~g~-------~l~vD~A~~~~ 215 (462)
T d1c4ka2 190 YNAHEVVK--------------------RIGHLCD-------YIEFDSAWVGY 215 (462)
T ss_dssp ECHHHHHH--------------------HHGGGBS-------EEEEECTTCCG
T ss_pred hhHHHHHH--------------------HHHHcCC-------EEEEechhhcc
Confidence 99999999 9999999 99999999887
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=1.1e-15 Score=157.58 Aligned_cols=321 Identities=11% Similarity=0.005 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284 (943)
Q Consensus 205 ~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~ 284 (943)
|.++..|..+ |.....|..+|.+.++|+ ++|+++|.+ .++|++|||+||+.|+.+++.
T Consensus 14 p~v~~A~~~a--~~g~~~yg~~p~~~~le~----~lA~~~G~~------------~~~~~~sGt~A~~~al~a~~~---- 71 (343)
T d1m6sa_ 14 EEMRKAMAQA--EVGDDVYGEDPTINELER----LAAETFGKE------------AALFVPSGTMGNQVSIMAHTQ---- 71 (343)
T ss_dssp HHHHHHHHTC--CCCCGGGTCCHHHHHHHH----HHHHHTTCS------------EEEEESCHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHhh--hcCCcccCCCHHHHHHHH----HHHHHHCCC------------eEEEeCCHHHHHHHHHHHHhc----
Confidence 4555444322 222345777899999996 568899975 368999999999999876531
Q ss_pred hhcccCCCchhhhcCCceEEEecCCCchHHHHHH---HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEe
Q psy11047 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG---LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSG 361 (943)
Q Consensus 285 ~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa---~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaT 361 (943)
+| + .+++....|++..... ..+...++.++. ..+..|++.+++.|.....+...+..++.+
T Consensus 72 ------~g--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 135 (343)
T d1m6sa_ 72 ------RG--------D-EVILEADSHIFWYEVGAMAVLSGVMPHPVPG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAIE 135 (343)
T ss_dssp ------TT--------C-EEEEETTCHHHHSSTTHHHHHTCCEEEEECE-ETTEECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred ------cC--------C-ceeccccccceeeecccccccccceeecccc-ccCccCHHHHHHhhhhhhcccccccccccc
Confidence 11 2 2455677888775543 234445666665 467889999999998877666555555555
Q ss_pred cCCCc-cccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcccccccccccee
Q psy11047 362 LALPA-FLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMV 437 (943)
Q Consensus 362 aGTT~-tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~V 437 (943)
...++ .|.+.| +.+|.+ +|++||+ ++|+|++++++ .. ...
T Consensus 136 ~~~~~~~~~~~~~~~l~~i~~--------------------~~~~~g~-------~~~~D~a~~~~-~~--~~~------ 179 (343)
T d1m6sa_ 136 NTHNRSGGRVVPLENIKEICT--------------------IAKEHGI-------NVHIDGARIFN-AS--IAS------ 179 (343)
T ss_dssp SSBTTTTSBCCCHHHHHHHHH--------------------HHHHHTC-------EEEEEETTHHH-HH--HHH------
T ss_pred cccccCCceecCHHHHHHHHH--------------------HHHhcCe-------EEEeccccccc-cc--ccc------
Confidence 54444 445544 556666 8999999 99999998865 21 000
Q ss_pred eeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCccccc
Q psy11047 438 VIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDY 517 (943)
Q Consensus 438 cFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~ 517 (943)
.... ... ....+.+++..+|.++........ .....+... ...
T Consensus 180 ------------------------~~~~-~~~---~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~-----~~~ 222 (343)
T d1m6sa_ 180 ------------------------GVPV-KEY---AGYADSVMFCLSKGLCAPVGSVVV----GDRDFIERA-----RKA 222 (343)
T ss_dssp ------------------------CCCH-HHH---HHTCSEEEEESSSTTCCSSCEEEE----ECHHHHHHH-----HHH
T ss_pred ------------------------ccch-hhh---cccccccccccccccccccccccc----ccHHHHhhh-----Hhh
Confidence 0000 011 123567788888877721111000 000000000 000
Q ss_pred Cc-cccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccc
Q psy11047 518 MH-WQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS 596 (943)
Q Consensus 518 ~~-~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~ 596 (943)
+. ++...+....+..++. .......+.. .
T Consensus 223 ~~~~~~~~~~~~~~~a~~~-------~~~~~~~~~~--------------------~----------------------- 252 (343)
T d1m6sa_ 223 RKMLGGGMRQAGVLAAAGI-------IALTKMVDRL--------------------K----------------------- 252 (343)
T ss_dssp HHHHTCCCSSTHHHHHHHH-------HHHHHSSTTH--------------------H-----------------------
T ss_pred CcccccccchhHHHHHhhh-------hhhhhhHHHH--------------------H-----------------------
Confidence 00 0000111111111111 1111110100 0
Q ss_pred cCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCC
Q psy11047 597 YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRT 676 (943)
Q Consensus 597 ~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~t 676 (943)
...+.++++.+.+.++.......+...|+|++.+.+......+|.++|.++|+ ++.+. +...+|+++++.+
T Consensus 253 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~l~~~L~~~Gi-~v~~~---~~~~iRi~~~~~~ 323 (343)
T d1m6sa_ 253 -----EDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGV-LANAV---SDTEIRLVTHKDV 323 (343)
T ss_dssp -----HHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTE-ECEEE---ETTEEEEECCTTS
T ss_pred -----HHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCcccHHHHHHHHHHCCC-EEecC---CCCEEEEECCCCC
Confidence 02334445555555666666777788999999987655446789999999996 44442 4568999999999
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy11047 677 TNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 677 t~edId~ll~~I~~~~~~l 695 (943)
|++|||++++.|+++.+++
T Consensus 324 t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 324 SRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988775
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.56 E-value=1.1e-13 Score=147.07 Aligned_cols=313 Identities=11% Similarity=-0.000 Sum_probs=173.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
+...++-..+++.+++++|.+++. .-.+||+|||+++..++... . .+ ++-++++
T Consensus 29 ~~~~~~~~~~r~~l~~l~~~~~~~--------~~i~~t~s~T~~~~~~~~~l--------~--~~--------~~~~~~~ 82 (361)
T d1m32a_ 29 DYNIGVVEQIRQQLTALATASEGY--------TSVLLQGSGSYAVEAVLGSA--------L--GP--------QDKVLIV 82 (361)
T ss_dssp HHHTTTHHHHHHHHHHHHCSSSSE--------EEEEEESCHHHHHHHHHHHS--------C--CT--------TCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC--------EEEEECCCHHHHHHHHHHHh--------h--hh--------cccccee
Confidence 334445567999999999998652 23688999999987666431 0 01 2234555
Q ss_pred cCCCchHHHHHH-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccc
Q psy11047 307 SDQAHSSVEKAG-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGL 385 (943)
Q Consensus 307 S~~aHySv~KAa-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~ 385 (943)
+...+.+..-.. .........+........+.+..+.....+ ..+.+|+.++.+|.+|.+.|+++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~tG~~~~i~~i~~------- 151 (361)
T d1m32a_ 83 SNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNAD----PTISHIAMVHSETTTGMLNPIDEVGA------- 151 (361)
T ss_dssp ESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHC----TTCCEEEEESEETTTTEECCHHHHHH-------
T ss_pred eehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhc----cCccceEEEeeecccccchhhhhhhh-------
Confidence 554444433333 222333444444444444343333332222 12778999999999999999999999
Q ss_pred ccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccc
Q psy11047 386 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP 465 (943)
Q Consensus 386 ~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~ 465 (943)
+|++||+ ++++||+++.+ .. | ..
T Consensus 152 -------------~~~~~g~-------~~~vDa~qs~G-~~--~---------------------------------~d- 174 (361)
T d1m32a_ 152 -------------LAHRYGK-------TYIVDAMSSFG-GI--P---------------------------------MD- 174 (361)
T ss_dssp -------------HHHHHTC-------EEEEECTTTTT-TS--C---------------------------------CC-
T ss_pred -------------hhcccce-------eeEeecccccC-cc--c---------------------------------cc-
Confidence 9999999 99999999866 32 1 00
Q ss_pred hhhhhcCCCCeeEEEEcCCCccCccCc-chhh---hhc-ccCccccccCCCCcccccCcccc-CCCCCc-----chHHHH
Q psy11047 466 ASLRIQGLGRAQNFTIVPSSLLRVKNS-GALH---RTF-NVEPLYLRHENSGLAIDYMHWQI-PLSKRF-----RALKLW 534 (943)
Q Consensus 466 ~r~~l~Gie~ADSItiDpHK~L~vr~~-~~L~---~af-~~~p~YL~~~~~g~~~d~~~~ti-e~SRrf-----rALklW 534 (943)
++. -.+|.+++++|||++.+.+ ..+. +.. ...+.... .............. ....++ ..+.+.
T Consensus 175 ----~~~-~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 248 (361)
T d1m32a_ 175 ----IAA-LHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRS-LSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFA 248 (361)
T ss_dssp ----TTT-TTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSC-STTCHHHHHHHHHHTTTCCSSCCCHHHHHHHH
T ss_pred ----ccc-cccceEEeeecccccCCCCceEEEechhhhhhhcccccc-ccccchhhhccccccccccCCCCCchhhhHHH
Confidence 111 2689999999999972211 1110 000 01111100 00000000000000 000011 111112
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHH
Q psy11047 535 FVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 614 (943)
Q Consensus 535 ~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L 614 (943)
..++..-.+|....+.+ + ...+++.+.+.+
T Consensus 249 ~~l~~~~~~~~~~~~~~--------------------------~------------------------~~~~~~~l~~~~ 278 (361)
T d1m32a_ 249 QALKELAKEGGVAARHQ--------------------------R------------------------YQQNQRSLVAGM 278 (361)
T ss_dssp HHHHHHHHHTHHHHHHH--------------------------H------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhHH--------------------------H------------------------HHHHHHHHHHHH
Confidence 22222222222222211 0 245566677776
Q ss_pred hCCCCeEEecCC---CccEEEEEecCCC-hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHH
Q psy11047 615 LGDPRFEIPAAR---HLGMVVIRLLGEN-ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRN 690 (943)
Q Consensus 615 ~~~p~~eIl~~~---~l~iV~Fr~~g~n-~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~ 690 (943)
... ++.+..++ ..++++|..+... .....+.+.|.++|.+ +........+++|+++..+++++||++++++|++
T Consensus 279 ~~~-g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~gi~-i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~ 356 (361)
T d1m32a_ 279 RAL-GFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFV-IYPGKVSQSDCFRIGNIGEVYAADITALLTAIRT 356 (361)
T ss_dssp HHT-TCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEE-CEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred hhc-CCcccCChhhcCCcEEEEECCCCCCCCHHHHHHHHHHCCcE-EECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 654 45554433 2457788875422 2357888999999964 3332334467899976667899999999999987
Q ss_pred H
Q psy11047 691 T 691 (943)
Q Consensus 691 ~ 691 (943)
+
T Consensus 357 ~ 357 (361)
T d1m32a_ 357 A 357 (361)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.49 E-value=4e-12 Score=135.32 Aligned_cols=139 Identities=10% Similarity=-0.089 Sum_probs=99.5
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.++...++-.++++.|++++|.|+. ...+||+|||+++..++.... . ....+
T Consensus 45 r~~ef~~i~~~~r~~l~~ll~~~~~---------~~i~~~g~gT~~~~~~~~~~~----------~---------~~~~~ 96 (377)
T d1vjoa_ 45 LDPAFLALMDEIQSLLRYVWQTENP---------LTIAVSGTGTAAMEATIANAV----------E---------PGDVV 96 (377)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCS---------CEEEESSCHHHHHHHHHHHHC----------C---------TTCEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCC---------eEEEEcCcHHHHHHHHHHhcc----------c---------ccccc
Confidence 4777888888999999999999865 357888999999877765421 0 11234
Q ss_pred EecCCCchHHHHHH--HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 305 YCSDQAHSSVEKAG--LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 305 ~~S~~aHySv~KAa--~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
++....|++..... .........+........+.+..+...... .+.+|+.+..+|.+|.+.|+++|++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~i~~i~~---- 167 (377)
T d1vjoa_ 97 LIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETH-----RPAILALVHAETSTGARQPLEGVGE---- 167 (377)
T ss_dssp EEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHH----
T ss_pred ceeeechhhhhhhhhhhhhcccccccccCCCCcccchhhhhhhhcC-----cceeeeeeeeeccceeeechhhhhh----
Confidence 44556777643332 223334555555555556666666555443 2668888999999999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|. .+|+||+++.+
T Consensus 168 ----------------~~~~~g~-------~~~vDa~~~~g 185 (377)
T d1vjoa_ 168 ----------------LCREFGT-------LLLVDTVTSLG 185 (377)
T ss_dssp ----------------HHHHHTC-------EEEEECTTTTT
T ss_pred ----------------hhhhccc-------eEEEecchhhh
Confidence 9999999 99999998654
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.43 E-value=5.6e-12 Score=135.21 Aligned_cols=138 Identities=11% Similarity=-0.057 Sum_probs=102.5
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
-++...++-.++++.|++++|.++. ...+||+|||+++..++.... .+ .-.+
T Consensus 44 r~~ef~~i~~~~r~~L~~ll~~~~~---------~~i~~~gsgT~a~ea~~~~l~----------~~---------~~~v 95 (388)
T d2ch1a1 44 FHAELFRTMDEVKDGLRYIFQTENR---------ATMCVSGSAHAGMEAMLSNLL----------EE---------GDRV 95 (388)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCCS---------CEEEESSCHHHHHHHHHHHHC----------CT---------TCEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCC---------eEEEEcCcHHHHHHHHHHHhc----------cc---------cccc
Confidence 4677778888999999999998653 246678899999876655421 01 1224
Q ss_pred EecCCCchHHHHHH---HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 305 YCSDQAHSSVEKAG---LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 305 ~~S~~aHySv~KAa---~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
++....|++..-+. ..+. ....+..+.....+.+..++++.... +.+++.++.+|.+|...|+++|++
T Consensus 96 l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~t~tG~~~~~~~i~~--- 166 (388)
T d2ch1a1 96 LIAVNGIWAERAVEMSERYGA-DVRTIEGPPDRPFSLETLARAIELHQ-----PKCLFLTHGDSSSGLLQPLEGVGQ--- 166 (388)
T ss_dssp EEEESSHHHHHHHHHHHHTTC-EEEEEECCTTSCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHH---
T ss_pred cccccccccccchhhhhhhcc-cccccccccccccchhhhhhhhccCC-----cceeeeeecccccccccchhhhcc---
Confidence 44566777754433 2343 56667776777788888877765542 678999999999999999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|. .++||++.+.+
T Consensus 167 -----------------~~~~~~~-------~~~vD~~ss~g 184 (388)
T d2ch1a1 167 -----------------ICHQHDC-------LLIVDAVASLC 184 (388)
T ss_dssp -----------------HHHHTTC-------EEEEECTTTBT
T ss_pred -----------------hhccccc-------eeeeeeeeccc
Confidence 9999999 99999998765
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=9.1e-12 Score=133.69 Aligned_cols=323 Identities=10% Similarity=-0.061 Sum_probs=190.7
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
+|...++-..+.+.+.++++.... ......+||+|||+++..++... +.. ..+| -.++
T Consensus 31 ~~~f~~~~~~~~~~~r~~~~~~~~------~~~~~i~~t~sgT~a~~~~~~~l----~~~---~~~g---------d~vl 88 (382)
T d2bkwa1 31 SPEFVSIFQRVLKNTRAVFKSAAA------SKSQPFVLAGSGTLGWDIFASNF----ILS---KAPN---------KNVL 88 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCGG------GTCEEEEEESCTTHHHHHHHHHH----SCT---TCSC---------CEEE
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcC------CCCeEEEEeCcHHHHHHHHHHHH----HHh---cCCC---------CceE
Confidence 567777777889999999986321 01135789999999988776542 110 1122 2356
Q ss_pred ecCCCchHHHHHH---HHCCccEEEE-ecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 306 CSDQAHSSVEKAG---LIGLVNMRYI-ESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 306 ~S~~aHySv~KAa---~LG~~~v~~V-p~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
+....|++..-.. ..|. .+..+ ..+.....+.+.+++.+.... +.+++.++..+.+|...|+.++++
T Consensus 89 v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~tg~~~~~~~~~~--- 159 (382)
T d2bkwa1 89 VVSTGTFSDRFADCLRSYGA-QVDVVRPLKIGESVPLELITEKLSQNS-----YGAVTVTHVDTSTAVLSDLKAISQ--- 159 (382)
T ss_dssp EECSSHHHHHHHHHHHHTTC-EEEEECCSSTTSCCCHHHHHHHHHHSC-----CSEEEEESEETTTTEECCHHHHHH---
T ss_pred EEEechhhhhhhhhcccccc-ccccccccCCCCccchhHHHHHhhhcc-----chheeeeeccccccccccchhhhh---
Confidence 6677888753332 2344 34444 344455678888888887642 668999999999999999999999
Q ss_pred ccccccccccccCchHHHHHHcC--CCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccC
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYF--PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKG 459 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~G--l~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G 459 (943)
+|++++ + ++||||+++.+ .. |
T Consensus 160 -----------------~~~~~~~~~-------~~~vDa~qs~g-~~--p------------------------------ 182 (382)
T d2bkwa1 160 -----------------AIKQTSPET-------FFVVDAVCSIG-CE--E------------------------------ 182 (382)
T ss_dssp -----------------HHHHHCTTS-------EEEEECTTTTT-TS--C------------------------------
T ss_pred -----------------hccccccce-------eeeeecccccc-cc--c------------------------------
Confidence 888775 6 89999998776 32 1
Q ss_pred cccccchhhhhcCCCCeeEEEEcCCCccC-ccCc-------chhhhhcc-----cCccccccCCCCcccccCccccCCCC
Q psy11047 460 RLHCVPASLRIQGLGRAQNFTIVPSSLLR-VKNS-------GALHRTFN-----VEPLYLRHENSGLAIDYMHWQIPLSK 526 (943)
Q Consensus 460 ~~~~p~~r~~l~Gie~ADSItiDpHK~L~-vr~~-------~~L~~af~-----~~p~YL~~~~~g~~~d~~~~tie~SR 526 (943)
+. .. . ..+|.+++++|||++ .+.- ..+..... ....|...... ...........+
T Consensus 183 ---id-~~----~-~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 250 (382)
T d2bkwa1 183 ---FE-FD----E-WGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRR---WTPIMENYEAGK 250 (382)
T ss_dssp ---CC-TT----T-TTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHH---HHHHHHHHHTTC
T ss_pred ---cc-cc----c-cCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhh---hhhhhhcccccc
Confidence 11 11 0 257999999999996 2111 11111000 00011100000 000000000111
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHH
Q psy11047 527 RFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRL 606 (943)
Q Consensus 527 rfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~L 606 (943)
+... .+....+..++.+.++.+.+ .|.+.+.++ +.++
T Consensus 251 ~~~~----~Tp~~~~i~al~~aL~~~~~---------------~g~~~~~~~------------------------~~~l 287 (382)
T d2bkwa1 251 GAYF----ATPPVQLINSLDVALKEILE---------------EGLHKRWDL------------------------HREM 287 (382)
T ss_dssp CCCS----SCCCHHHHHHHHHHHHHHHH---------------HCHHHHHHH------------------------HHHH
T ss_pred cccc----cCCcHHHHHHHHHHHHHHHH---------------hhhhhhHHH------------------------HHHH
Confidence 1000 12333445566666666432 233333221 4568
Q ss_pred HHHHHHHHhCCCCeEEecC--C---CccEEEEEecCCChHHHHHHHHHhccCcEEEeec-ccCCCcEEEEe-ecCCCCHH
Q psy11047 607 AQKFEALVLGDPRFEIPAA--R---HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA-SLRIQGLGRAQ-NFTRTTND 679 (943)
Q Consensus 607 A~~l~~~L~~~p~~eIl~~--~---~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t-~~~g~~~lR~v-~~~~tt~e 679 (943)
++++.+.+....++..+.. . ...+++|+... ...+.+.|.++|...-+.. ...+..++|++ ++..++++
T Consensus 288 ~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~----~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e 363 (382)
T d2bkwa1 288 SDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD----PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNK 363 (382)
T ss_dssp HHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC----HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSST
T ss_pred HHHHHHHhhhcccccccccCchhccCCcEEEEcCCC----HHHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHH
Confidence 8889888888777666542 1 24667888753 4577778888885432211 11234689995 78888899
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11047 680 DITRDWNEIRNTATEI 695 (943)
Q Consensus 680 dId~ll~~I~~~~~~l 695 (943)
||+++++.|..+...|
T Consensus 364 ~i~~l~~~l~~i~~~L 379 (382)
T d2bkwa1 364 NLPYMKNCFDLIKLAL 379 (382)
T ss_dssp TCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998887765443
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=1.9e-10 Score=126.76 Aligned_cols=323 Identities=12% Similarity=0.086 Sum_probs=191.3
Q ss_pred ChHHHHHHHHHHHHhccCccccCChhH---HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHH
Q psy11047 203 SYPSLLGDMLSDAINCLGFTWASSPAC---TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGR 279 (943)
Q Consensus 203 s~~silgd~L~~alN~n~~~~~~SPaa---teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR 279 (943)
..|.+... +..++...+.....++.. ..+-.++-+.||+++|.+ ..+++++|++||+.++.+..
T Consensus 60 ~hp~v~~a-~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e------------~al~~~SG~~An~~~i~~l~ 126 (401)
T d1fc4a_ 60 NHPDLIAA-AKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGME------------DAILYSSCFDANGGLFETLL 126 (401)
T ss_dssp TCHHHHHH-HHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCS------------EEEEESCHHHHHHTTHHHHC
T ss_pred CCHHHHHH-HHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhcCC------------ceEEecchhhhhHHHHHHhc
Confidence 35565543 334455555444444322 122223334568888875 36899999999988875421
Q ss_pred HHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEE
Q psy11047 280 TEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIF 359 (943)
Q Consensus 280 ~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VV 359 (943)
. +..+|++....|.|+..++.+...++..++. .|.+++++.+....+.+....+|+
T Consensus 127 ----------~---------~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~-----~d~~~le~~~~~~~~~~~~~~liv 182 (401)
T d1fc4a_ 127 ----------G---------AEDAIISDALNHASIIDGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIA 182 (401)
T ss_dssp ----------C---------TTCEEEEETTCCHHHHHHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEE
T ss_pred ----------C---------CCcEEEeCCcchHHHHccccccCceEEEEcC-----CChHHHHHHHHHhhhcccCceEEE
Confidence 1 2346788999999999998776656666654 368888888877665555455554
Q ss_pred EecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeee
Q psy11047 360 SGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVI 439 (943)
Q Consensus 360 aTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcF 439 (943)
.-.--...|.+-||.++.+ +|++||+ ++++|.|++++ .+ |
T Consensus 183 ~egv~s~~G~~~~L~~l~~--------------------L~~~~~a-------~LivDeah~~g-~~--------g---- 222 (401)
T d1fc4a_ 183 TDGVFSMDGVIANLKGVCD--------------------LADKYDA-------LVMVDDSHAVG-FV--------G---- 222 (401)
T ss_dssp EESEETTTTEECCHHHHHH--------------------HHHHTTE-------EEEEECTTTTT-TS--------S----
T ss_pred EcCCCCCCCchhhhhHHHH--------------------HHhhcCc-------EEEehhhhccc-cc--------c----
Confidence 4322234578889999999 9999999 99999999887 32 0
Q ss_pred eecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC-ccC-----cchhhhhc-ccCccccccCCCC
Q psy11047 440 RLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR-VKN-----SGALHRTF-NVEPLYLRHENSG 512 (943)
Q Consensus 440 R~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-vr~-----~~~L~~af-~~~p~YL~~~~~g 512 (943)
.+|.= ......-...+|-++...+|.++ ..- ...+.+.+ ...+.|+..
T Consensus 223 -----------------~~G~G----~~~~~~~~~~~dii~~tl~Ka~gg~~Gg~v~g~~~~~~~l~~~~~~~~~s---- 277 (401)
T d1fc4a_ 223 -----------------ENGRG----SHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFS---- 277 (401)
T ss_dssp -----------------TTSCC----HHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHHHHHHHHHHCHHHHHS----
T ss_pred -----------------CCCCc----cchhccCCCCCeEEEeecccccccCCcccccCCHHHHHHHHcCChhhhhc----
Confidence 01110 11111123568999999999985 211 11111111 011222221
Q ss_pred cccccCccccCCCCCcchHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCc
Q psy11047 513 LAIDYMHWQIPLSKRFRALKLWFVIRNFGI-KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFP 591 (943)
Q Consensus 513 ~~~d~~~~tie~SRrfrALklW~tLr~~G~-~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~ 591 (943)
-+..+..+.+.+..+=. ....+..++
T Consensus 278 -------------~~l~p~~~~aa~~~l~~~~~~~~~~~~---------------------------------------- 304 (401)
T d1fc4a_ 278 -------------NSLAPAIVAASIKVLEMVEAGSELRDR---------------------------------------- 304 (401)
T ss_dssp -------------CCCCHHHHHHHHHHHHHHHTCHHHHHH----------------------------------------
T ss_pred -------------CCCCHHHHHHHHhhhcccccCHHHHHH----------------------------------------
Confidence 11111111112221100 000111111
Q ss_pred ccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEe----ecccCCCcE
Q psy11047 592 NFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV----PASLRIQGL 667 (943)
Q Consensus 592 ~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s----~t~~~g~~~ 667 (943)
..++.++|.+.+... ++.+.. ...+|+.+.+. .+.....+.++|.++|. +++ |+.-.+...
T Consensus 305 -----------l~~~~~~~~~~l~~~-g~~~~~-~~~pIv~v~~~-~~~~a~~~~~~L~~~Gi-~v~~i~~PtVp~g~~~ 369 (401)
T d1fc4a_ 305 -----------LWANARQFREQMSAA-GFTLAG-ADHAIIPVMLG-DAVVAQKFARELQKEGI-YVTGFFYPVVPKGQAR 369 (401)
T ss_dssp -----------HHHHHHHHHHHHHHT-TCCBCC-SSSSEEEEEEE-CHHHHHHHHHHHHHTTE-ECCEECTTSSCTTCEE
T ss_pred -----------HHHHHHHHHhhhccc-CCccCC-CCCCEEEEEEC-CHHHHHHHHHHHHHCCc-eEEeECCCCCCCCCce
Confidence 234556666666554 344433 45677776664 33456678899999986 444 333456677
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 668 GRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 668 lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
||++++...|++|||+++++|+++.+++
T Consensus 370 lRi~~~a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 370 IRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999997764
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=5.5e-10 Score=122.16 Aligned_cols=296 Identities=12% Similarity=0.054 Sum_probs=175.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
+...++|+ .||+++|.+ ..+++++|++||+.++.+-. .+..++++
T Consensus 83 ~~~~~lE~----~LA~~~g~e------------~al~~~SG~~an~~~i~al~-------------------~~~d~v~~ 127 (383)
T d1bs0a_ 83 VVHQALEE----ELAEWLGYS------------RALLFISGFAANQAVIAAMM-------------------AKEDRIAA 127 (383)
T ss_dssp HHHHHHHH----HHHHHHTCS------------EEEEESCHHHHHHHHHHHHC-------------------CTTCEEEE
T ss_pred hHHHHHHH----HHHHhcCCC------------ceEEecccchhhHHHHHhhc-------------------CCCceEEe
Confidence 44456665 668888986 36899999999988876421 12346788
Q ss_pred cCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccc
Q psy11047 307 SDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLG 386 (943)
Q Consensus 307 S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~ 386 (943)
-+..|.|+..++.+....++.++- .|.++|++.+...... ..+|+.-......|.+-|+.+|.+
T Consensus 128 d~~~h~si~~g~~~~~~~~~~~~h-----nd~~~le~~l~~~~~~---~~~vv~e~v~s~~G~i~pl~~l~~-------- 191 (383)
T d1bs0a_ 128 DRLSHASLLEAASLSPSQLRRFAH-----NDVTHLARLLASPCPG---QQMVVTEGVFSMDGDSAPLAEIQQ-------- 191 (383)
T ss_dssp ETTCCHHHHHHHHTSSSEEEEECT-----TCHHHHHHHHHSCCSS---CEEEEEESBCTTTCCBCCHHHHHH--------
T ss_pred eccccHHHhhccccCCCcceEecc-----hHHHHHHHHhcccCCC---ceEEEecCCCCCCCcccchhHHHH--------
Confidence 899999999999876667777765 4699999998865432 345555555556799999999999
Q ss_pred cccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccch
Q psy11047 387 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA 466 (943)
Q Consensus 387 ~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~ 466 (943)
+|++||+ +++||.|++.+ .+ | .+|.-.+.
T Consensus 192 ------------l~~~~~~-------~livDeah~~g-v~--------G---------------------~~g~G~~~-- 220 (383)
T d1bs0a_ 192 ------------VTQQHNG-------WLMVDDAHGTG-VI--------G---------------------EQGRGSCW-- 220 (383)
T ss_dssp ------------HHHHTTC-------EEEEECTTTTT-TS--------S---------------------GGGCCHHH--
T ss_pred ------------HHHhcCc-------EEEeecceeee-ec--------C---------------------CcccchHH--
Confidence 9999999 99999999877 33 0 00100111
Q ss_pred hhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHH
Q psy11047 467 SLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQ 546 (943)
Q Consensus 467 r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~ 546 (943)
..++ ..|.+....-|.++..-...... .....|+...... ..++-..+ +..+..+-.+++.+-.....
T Consensus 221 ---~~~~-~~~~~~~t~~ka~g~~Gg~v~~~--~~~~~~l~~~~~~-----~~~s~~~~-p~~~aa~~~a~~~~~~~~~~ 288 (383)
T d1bs0a_ 221 ---LQKV-KPELLVVTFGKGFGVSGAAVLCS--STVADYLLQFARH-----LIYSTSMP-PAQAQALRASLAVIRSDEGD 288 (383)
T ss_dssp ---HTTC-CCSEEEEESSSTTSSCCEEEEEC--HHHHHHHHHHCHH-----HHSSBCCC-HHHHHHHHHHHHHHHSHHHH
T ss_pred ---HcCC-ccccccccccccccccccccccc--hhHHHHHHhhchh-----hhhccccc-chHHHHHHHHHHHHHhhhhH
Confidence 1122 34555666667777221111000 0011222211000 00000000 00000000111111001111
Q ss_pred HHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC
Q psy11047 547 KHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR 626 (943)
Q Consensus 547 ~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~ 626 (943)
....+ ..++..++.+.+.+. ++.+. +.
T Consensus 289 ~~~~~---------------------------------------------------l~~~~~~~~~~l~~~-g~~~~-~~ 315 (383)
T d1bs0a_ 289 ARREK---------------------------------------------------LAALITRFRAGVQDL-PFTLA-DS 315 (383)
T ss_dssp HHHHH---------------------------------------------------HHHHHHHHHHHHTTS-SCEEC-SC
T ss_pred HHHHH---------------------------------------------------HHHHHHHHHHHHHhc-CCccC-CC
Confidence 11111 234566777888776 45554 34
Q ss_pred CccEEEEEecCCChHHHHHHHHHhccCcEEEe----ecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 627 HLGMVVIRLLGENILTEKLLKRLNSKGRLHCV----PASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 627 ~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s----~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
..+|+...+. .+.....+.++|.++|. +++ |+.-.+...+|++++...|++||+++++.|..+
T Consensus 316 ~s~Ii~v~~g-~~~~a~~~~~~L~~~Gi-~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 316 CSAIQPLIVG-DNSRALQLAEKLRQQGC-WVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp CSSBCCEEEE-SHHHHHHHHHHHHHTTE-ECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEC-CHHHHHHHHHHHHHCCc-eEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 4566655554 33446688889999886 443 333466778999999999999999999999875
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=3.6e-10 Score=125.50 Aligned_cols=151 Identities=9% Similarity=0.027 Sum_probs=100.3
Q ss_pred ccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhh
Q psy11047 218 CLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAE 297 (943)
Q Consensus 218 ~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~ 297 (943)
..-..|..+|...+||.. +++++|.+ .++++++||+||..|+.+++.+....... +
T Consensus 65 ~gd~~Y~~~~~~~~le~~----~a~l~G~~------------~~~~~~sGt~A~~~a~~~~~~~g~~~~~~---~----- 120 (467)
T d2v1pa1 65 RGDEAFSGSRSYYALAES----VKNIFGYQ------------YTIPTHQGRGAEQIYIPVLIKKREQEKGL---D----- 120 (467)
T ss_dssp SCCCCSSSCHHHHHHHHH----HHHHTCCS------------EEEEECSSTTTHHHHHHHHHHHHHHHHCC---C-----
T ss_pred ccchhhcCCchHHHHHHH----HHHHHCCC------------EEEECCCCHHHHHHHHHHHhhccceEecC---C-----
Confidence 344568889999999975 58899986 36899999999999999887643221110 0
Q ss_pred cCCceEEEecCCCchHHHHHHHHCCccEEEEecCC----------CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcc
Q psy11047 298 INSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD----------KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367 (943)
Q Consensus 298 i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~----------~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~t 367 (943)
..-.+..+...|+...-+..+.+..++.++.+. .+.+|+++|++.|+....+. .+++++-....+..
T Consensus 121 --~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~-~~~i~~e~~~~~~g 197 (467)
T d2v1pa1 121 --RSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNN-VPYIVATITSNSAG 197 (467)
T ss_dssp --TTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGG-CCCEEEESSBCGGG
T ss_pred --CCcEEEEecccccccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccc-cceeeecceeeccc
Confidence 111234455566666555566666777776542 57899999999998764332 22222222222222
Q ss_pred cc---cccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 368 LV---VDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 368 Ga---IDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
|. .+++++|.+ +|++||+ ++|+|+|+.+
T Consensus 198 g~~~~~~~l~~i~~--------------------ia~~~g~-------~l~~D~a~~~ 228 (467)
T d2v1pa1 198 GQPVSLANLKAMYS--------------------IAKKYDI-------PVVMDSARFA 228 (467)
T ss_dssp CBCCCHHHHHHHHH--------------------HHHHTTC-------CEEEECTTHH
T ss_pred cccCCHHHHHHHHH--------------------HHHHcCC-------EEEEechhhh
Confidence 33 356888888 9999999 9999999643
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.1e-10 Score=122.16 Aligned_cols=339 Identities=8% Similarity=-0.093 Sum_probs=178.6
Q ss_pred eEEccCCCC-hHHHHHHHHHHHHhccCc---ccc---CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCCh
Q psy11047 195 HAYFPALNS-YPSLLGDMLSDAINCLGF---TWA---SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTA 267 (943)
Q Consensus 195 ~g~~~~~~s-~~silgd~L~~alN~n~~---~~~---~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGG 267 (943)
+.|-|++.. ++.++..|-..++|.++. .++ -+|...++-..+++.|++++|.+++ ...+|++|+
T Consensus 3 ~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~---------~~v~~~~gs 73 (360)
T d1bjna_ 3 FNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSN---------YKVLFCHGG 73 (360)
T ss_dssp EECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT---------EEEEEESSH
T ss_pred EEeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC---------CEEEEECCc
Confidence 445566554 566666655555554322 222 3677888888999999999999764 257899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH---HCCccEEEEecCCCCCcCHHHHHHH
Q psy11047 268 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL---IGLVNMRYIESDDKLSLRGDKLIEA 344 (943)
Q Consensus 268 TeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~---LG~~~v~~Vp~D~~grmD~daLe~a 344 (943)
|++++.+..... . + ++.++++.. .|+....... .....+..+..+..+..+.+.+++.
T Consensus 74 ~t~~~~a~~~~~---~--------~-------~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (360)
T d1bjna_ 74 GRGQFAAVPLNI---L--------G-------DKTTADYVD-AGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMRE 134 (360)
T ss_dssp HHHHHHHHHHHH---C--------T-------TCCEEEEEE-SSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGG
T ss_pred hHHHHhhhhhcc---c--------c-------cccccceec-ccchhhhhHHHHhhcCccceeeccccCCCcchhhhhhh
Confidence 999876654321 0 1 122344443 3333333332 2333445554444555555554444
Q ss_pred HHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCC
Q psy11047 345 IERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDP 424 (943)
Q Consensus 345 I~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~ 424 (943)
+... +.+++.++.+|.+|...|+.++.+ +.++. .+++|++.+..
T Consensus 135 ~~~~------~~~v~v~~~~~~t~~~~~~~~i~~----------------------~~~~~-------~v~vDa~~~~~- 178 (360)
T d1bjna_ 135 WQLS------DNAAYMHYCPNETIDGIAIDETPD----------------------FGADV-------VVAADFSSTIL- 178 (360)
T ss_dssp CCCC------SSCSCEEECSEETTTTEECCCCCC----------------------CCTTC-------CEEEECTTTTT-
T ss_pred hccC------CceeEEEecccccccCccccceec----------------------ccccc-------eeeeeeecccc-
Confidence 3332 445666677888898888776654 34666 78999988765
Q ss_pred ccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh---hhccc
Q psy11047 425 RFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH---RTFNV 501 (943)
Q Consensus 425 afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~---~af~~ 501 (943)
.. ..+ ...+|-..+..||+++..-...+. .....
T Consensus 179 ~~-----------------------------------~vd--------~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~ 215 (360)
T d1bjna_ 179 SR-----------------------------------PID--------VSRYGVIYAGAQKNIGPAGLTIVIVREDLLGK 215 (360)
T ss_dssp SS-----------------------------------CCC--------GGGCSEEEEETTTTTSSTTCEEEEEEGGGCSC
T ss_pred ce-----------------------------------eee--------eccceeEEEEcccccccCCCceeEeeehhhhh
Confidence 32 111 124689999999999933222110 00000
Q ss_pred CccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccccc
Q psy11047 502 EPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGF 581 (943)
Q Consensus 502 ~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~ 581 (943)
........ ....+...+.-.. .......+..+......-.. .. +.....+.
T Consensus 216 ~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~~~~~~--- 266 (360)
T d1bjna_ 216 ANIACPSI--LDYSILNDNGSMF--NTPPTFAWYLSGLVFKWLKA---NG-------------------GVAEMDKI--- 266 (360)
T ss_dssp CCTTSCGG--GCHHHHHHTTTCS--SCCCHHHHHHHHHHHHHHHH---TT-------------------HHHHHHHH---
T ss_pred ccccCCcc--hhhHHHHhhhhhc--cccccchHHHHHHHHHHHhh---hh-------------------hHHHHHHH---
Confidence 00000000 0000000000000 01111111111111100000 00 00000000
Q ss_pred ccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC---CCccEEEEEecCCChHHHHHHHHHhccCcEEEe
Q psy11047 582 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA---RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV 658 (943)
Q Consensus 582 ~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~---~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s 658 (943)
..+++......+.......+... ...++++|++++ +...+.+.+.+.++|....+
T Consensus 267 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~-~~~~~~~~~~l~~~Gi~~~~ 324 (360)
T d1bjna_ 267 ---------------------NQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLAD-SALDKLFLEESFAAGLHALK 324 (360)
T ss_dssp ---------------------HHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESS-GGGHHHHHHHHHHTTEECCB
T ss_pred ---------------------HHHHHHHHHHhhhccccccccCCcccccceEEEEEcCC-cccHHHHHHHHHHCCCEeec
Confidence 23445555555555555444332 236789999964 23457788888888853322
Q ss_pred ecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 659 PASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 659 ~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
+ ++.-+.+|+++...+|.|||++++++|++..+
T Consensus 325 G--~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~ 357 (360)
T d1bjna_ 325 G--HRVVGGMRASIYNAMPLEGVKALTDFMVEFER 357 (360)
T ss_dssp C--CTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred C--CCccCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 2 22223489999999999999999999998654
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.18 E-value=1.6e-09 Score=115.36 Aligned_cols=140 Identities=14% Similarity=0.015 Sum_probs=106.7
Q ss_pred HHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCC
Q psy11047 212 LSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHP 291 (943)
Q Consensus 212 L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~p 291 (943)
+...+... .+..+|.+.++|. ++|+++|.+ ..++|++||.|+..||.+..
T Consensus 18 ~~~~~~~~--~~~~G~~v~~~E~----~la~~~g~~------------~ai~~~sgt~Al~~al~al~------------ 67 (376)
T d1mdoa_ 18 VKTVLDSG--WITTGPKNQELEA----AFCRLTGNQ------------YAVAVSSATAGMHIALMALG------------ 67 (376)
T ss_dssp HHHHHHHT--CCSSSHHHHHHHH----HHHHHHCCS------------EEEEESCHHHHHHHHHHHTT------------
T ss_pred HHHHHhcC--CCcCCHHHHHHHH----HHHHHHCcC------------eEEEeCCHHHHHHHHHHHhC------------
Confidence 34444432 3446899999995 578999975 36899999999999986521
Q ss_pred CchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc
Q psy11047 292 ELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 292 Gl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI 370 (943)
+ .+.-.|+++..+|.++..|...-+...+.++++. .+.||++.|+++|++. +.+|+++ ...|..
T Consensus 68 -~-----~~gdeVi~~~~~~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~------tkaIi~~---h~~G~~ 132 (376)
T d1mdoa_ 68 -I-----GEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQ------TKAIIPV---HYAGAP 132 (376)
T ss_dssp -C-----CTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTT------EEEECCB---CGGGCC
T ss_pred -C-----CCCCEEEEecccccccccchhccccceeeecccccccCCCHHHHHHhcCCC------CeEEEEe---CCCCCc
Confidence 1 1223588899999999999865444677787774 6889999999999764 5566654 467888
Q ss_pred ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 371 DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 371 DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-|+++|.+ +|++||+ ++..|+|++-+
T Consensus 133 ~~~~~i~~--------------------i~~~~~i-------~vIeD~a~a~g 158 (376)
T d1mdoa_ 133 ADLDAIYA--------------------LGERYGI-------PVIEDAAHATG 158 (376)
T ss_dssp CCHHHHHH--------------------HHHHHTC-------CBCEECTTCTT
T ss_pred cchhHHHH--------------------HHHhcCc-------eEEeccchhcc
Confidence 89999999 9999999 99999998655
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.15 E-value=2e-09 Score=119.03 Aligned_cols=144 Identities=12% Similarity=-0.062 Sum_probs=92.3
Q ss_pred CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcC
Q psy11047 220 GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEIN 299 (943)
Q Consensus 220 ~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~ 299 (943)
-..|..+|...+||.. +++++|.+ .++||++||+||..|+.+++...-.. + .
T Consensus 68 d~~y~~~~~~~~le~~----~a~l~g~~------------~~~~~~sGt~A~~~a~~~~~~~g~~~------~------~ 119 (465)
T d1ax4a_ 68 DEAYAGSRNYYDLKDK----AKELFNYD------------YIIPAHQGRGAENILFPVLLKYKQKE------G------K 119 (465)
T ss_dssp CCCSSSCHHHHHHHHH----HHHHHCCC------------EEEEESSHHHHHHHHHHHHHHHHHHT------T------C
T ss_pred hhhhccChHHHHHHHH----HHHHHCCC------------EEEECCCcHHHHHHHHHHHHHHHHhc------C------C
Confidence 3467788988889865 57888885 47999999999999999998653211 1 0
Q ss_pred CceEEEecCCCchHHHHHH-HHCCccEEEEe----------cCCCCCcCHHHHHHHHHHhhccCCCcEEEEEec-CCCcc
Q psy11047 300 SRLVAYCSDQAHSSVEKAG-LIGLVNMRYIE----------SDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGL-ALPAF 367 (943)
Q Consensus 300 ~~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp----------~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTa-GTT~t 367 (943)
.+..++.+. .|+....+. .+++...+.+. .+..|.+|+++|+++|++.... .+.+++.+. .++..
T Consensus 120 ~~~~~i~~~-~h~~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~--~~~~~~~~~~~~~~g 196 (465)
T d1ax4a_ 120 AKNPVFISN-FHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD--NIVAIVSTVTCNSAG 196 (465)
T ss_dssp CSSCEEEES-SCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGG--GEEEEEEESSBTTTT
T ss_pred CCCeEEecc-chhhhhHHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccc--cccceeeccccccCc
Confidence 112233343 454433333 44433333332 2357899999999999875332 133333333 22222
Q ss_pred ccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhc
Q psy11047 368 LVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 421 (943)
Q Consensus 368 GaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~G 421 (943)
|.+ +.+++|.+ +|++||+ ++|+|+|+.
T Consensus 197 ~~~~~~~~l~~i~~--------------------~~~~~g~-------~l~~D~~~~ 226 (465)
T d1ax4a_ 197 GQPVSMSNLKEVYE--------------------IAKQHGI-------FVVMDSARF 226 (465)
T ss_dssp SBCCCHHHHHHHHH--------------------HHHHHTC-------CEEEECTTH
T ss_pred eecCCHHHHHHHHH--------------------HHHHcCC-------EEEEECcch
Confidence 333 45778888 9999999 999999964
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.10 E-value=1.3e-09 Score=122.08 Aligned_cols=137 Identities=11% Similarity=-0.028 Sum_probs=89.5
Q ss_pred cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhc
Q psy11047 219 LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEI 298 (943)
Q Consensus 219 n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i 298 (943)
.-..|..+|...+||..+ ++++|.+ .+++|++||+||..++.+-. .+|
T Consensus 67 GDd~Y~~dpt~~~lE~~~----a~l~G~e------------~al~~~SGt~An~~a~~~l~----------~~G------ 114 (456)
T d1c7ga_ 67 GDEAYAGSENFYHLEKTV----KELFGFK------------HIVPTHQGRGAENLLSQLAI----------KPG------ 114 (456)
T ss_dssp CCCCSSSCHHHHHHHHHH----HHHHCCS------------EEEEESSHHHHHHHHHHHHC----------CTT------
T ss_pred cchhccCCchHHHHHHHH----HHHhCCC------------eEEECCCHHHHHHHHHHHhc----------CCC------
Confidence 446789999999999866 7899986 36999999999988876521 122
Q ss_pred CCceEEEecCCCchHHHHHH-HHCCccEEEEec----------CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcc
Q psy11047 299 NSRLVAYCSDQAHSSVEKAG-LIGLVNMRYIES----------DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367 (943)
Q Consensus 299 ~~~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp~----------D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~t 367 (943)
-.|++. .|+-...+. ...+...+.+.+ ..+|.+|+++|++.|++.... .+.+++...-++..
T Consensus 115 ---d~Vi~~--~~f~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~--~~~~i~~e~~~n~~ 187 (456)
T d1c7ga_ 115 ---QYVAGN--MYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAE--NIAYICLAVTVNLA 187 (456)
T ss_dssp ---EEEEES--SCCHHHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGG--GEEEEEEESSBTTT
T ss_pred ---CeEecC--cchHHHHHHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCc--cceeEEeeeccccc
Confidence 235544 343222232 222222222221 246889999999999976432 23344444333333
Q ss_pred -cc---cccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhc
Q psy11047 368 -LV---VDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 421 (943)
Q Consensus 368 -Ga---IDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~G 421 (943)
|. .+++.+|.+ +|++||+ .+|+|+|..
T Consensus 188 gG~~~~~~~l~~i~~--------------------~a~~~~~-------~~~~D~a~~ 218 (456)
T d1c7ga_ 188 GGQPVSMANMRAVHE--------------------MASTYGI-------KIFYDATRC 218 (456)
T ss_dssp TSBCCCHHHHHHHHH--------------------HHHHHTC-------CEEEECTTH
T ss_pred ccceecHHHHHHHHH--------------------HHHHcCC-------EEEEEcchh
Confidence 33 356788888 9999999 999999954
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.09 E-value=5.2e-10 Score=119.04 Aligned_cols=165 Identities=7% Similarity=-0.122 Sum_probs=105.4
Q ss_pred eEEccCCCC-hHHHHHHHHHHHHhcc---Ccccc---CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCCh
Q psy11047 195 HAYFPALNS-YPSLLGDMLSDAINCL---GFTWA---SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTA 267 (943)
Q Consensus 195 ~g~~~~~~s-~~silgd~L~~alN~n---~~~~~---~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGG 267 (943)
+.|-|++.. ++.++..|...+.|.+ ..... -|+...++-..+++.|+++||.+++ ...+|++||
T Consensus 5 ~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~---------~~i~~~~gs 75 (361)
T d2c0ra1 5 YNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTG---------YKVLFIQGG 75 (361)
T ss_dssp EECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSS---------EEEEEESSH
T ss_pred cccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC---------CEEEEECCC
Confidence 344555544 5667766666555532 22222 2688889999999999999999865 257888998
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH--HHHHHHHCCccEEEEecCCCCCcCHHHHHHHH
Q psy11047 268 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS--VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAI 345 (943)
Q Consensus 268 TeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS--v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI 345 (943)
+.+++.|+.... . .++ +.++.++ ..+++ +.+.+...+..+..+..+....++.+.+++.+
T Consensus 76 ~t~~~ea~~~~l---~------~~~--------~~~l~~~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (361)
T d2c0ra1 76 ASTQFAMIPMNF---L------KEG--------QTANYVM-TGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQ 137 (361)
T ss_dssp HHHHHHHHHHHH---C------CTT--------CEEEEEE-CSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCC
T ss_pred chHHHHHHHhcc---c------cCC--------CceEEEe-echhhhhhhhhhhhcCceeeeeccccccccchhhhhhhc
Confidence 888876654311 0 111 2223332 23332 22333323346777777777788888877665
Q ss_pred HHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 346 ERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 346 ~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
..+ +.. +.++.+|...|+.+|.+ +|+++|+ .++|||+.+..
T Consensus 138 ~~~------~~~----~v~~~tg~~~~~~~i~~--------------------~~~~~~a-------l~~vDavss~g 178 (361)
T d2c0ra1 138 LQD------NAA----YLHLTSNETIEGAQFKA--------------------FPDTGSV-------PLIGDMSSDIL 178 (361)
T ss_dssp CCT------TEE----EEEEESEETTTTEECSS--------------------CCCCTTS-------CEEEECTTTTT
T ss_pred ccC------cce----EEEEecccceecceEEE--------------------eeccCCc-------eEEEEeecccc
Confidence 543 222 22356778888899998 9999999 99999998766
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.06 E-value=3.4e-10 Score=119.67 Aligned_cols=164 Identities=9% Similarity=-0.118 Sum_probs=94.1
Q ss_pred eEEccCCCC-hHHHHHHHHHHHHhccC---cccc---CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCCh
Q psy11047 195 HAYFPALNS-YPSLLGDMLSDAINCLG---FTWA---SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTA 267 (943)
Q Consensus 195 ~g~~~~~~s-~~silgd~L~~alN~n~---~~~~---~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGG 267 (943)
+.|-|++.. ++.++..|-...+|-++ ...+ -||....+-..+++.|+++||.|++ ...+|++|+
T Consensus 5 ~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~---------~~i~~~~gt 75 (360)
T d1w23a_ 5 FNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPND---------YQILFLQGG 75 (360)
T ss_dssp EECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT---------EEEEEESSH
T ss_pred eEeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC---------CEEEEeCCc
Confidence 344455444 55666555554544322 1212 2788888988999999999999875 257888888
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH-H--HCCccEEEEecCCCCCcCHHHHHHH
Q psy11047 268 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG-L--IGLVNMRYIESDDKLSLRGDKLIEA 344 (943)
Q Consensus 268 TeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa-~--LG~~~v~~Vp~D~~grmD~daLe~a 344 (943)
|.++..+..... . . ...++.+....|++ .+.+ . .....+..+..........+.+++.
T Consensus 76 ~~~~~~~~~~~~---~------~---------~~~~v~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (360)
T d1w23a_ 76 ASLQFTMLPMNL---L------T---------KGTIGNYVLTGSWS-EKALKEAKLLGETHIAASTKANSYQSIPDFSEF 136 (360)
T ss_dssp HHHHHHHHHHHH---C------C---------TTCEEEEEECSHHH-HHHHHHHHTTSEEEEEEECGGGTSCSCCCGGGC
T ss_pred HHHHHHHHHhhh---c------c---------cCcccceeeccchh-hhhHHHHHHhhhcceeeccccccccchhhhhhc
Confidence 888765544311 0 0 11223332333333 3333 2 2222333333322222233333222
Q ss_pred HHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 345 IERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 345 I~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.. +..++.+|.+|.+.|+.+|++ +|+++|. .++|||+.+.+
T Consensus 137 ~~~----------~~~~~~~~~tg~~~~~~~i~~--------------------~~~~~g~-------l~ivDavqs~g 178 (360)
T d1w23a_ 137 QLN----------ENDAYLHITSNNTIYGTQYQN--------------------FPEINHA-------PLIADMSSDIL 178 (360)
T ss_dssp CCC----------TTEEEEEEESEETTTTEECSS--------------------CCCCCSS-------CEEEECTTTTT
T ss_pred ccc----------cccceeEecCCccccceeeee--------------------cccccee-------eEEeecccccc
Confidence 211 123455677899999999999 9999999 99999998766
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.06 E-value=8.8e-09 Score=113.58 Aligned_cols=290 Identities=12% Similarity=0.014 Sum_probs=172.9
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE 315 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~ 315 (943)
+=+.+|+++|.+. .++.++|..||+.++.+-.. . .+..+|+.....|.|+.
T Consensus 95 LE~~lA~~~g~e~------------all~~sG~~An~~~i~~l~~---~--------------~~~d~i~~D~~~Hasi~ 145 (396)
T d2bwna1 95 LEAEIAGLHQKEA------------ALVFSSAYNANDATLSTLRV---L--------------FPGLIIYSDSLNHASMI 145 (396)
T ss_dssp HHHHHHHHTTCSE------------EEEESCHHHHHHHHHHHHHH---H--------------STTCEEEEETTCCHHHH
T ss_pred HHHHHHHHhCCCc------------eeeeecchHHHHHHHHHHhc---c--------------cCCCceeehhhhhhccc
Confidence 3446799999864 58899999999776653211 0 12347888999999999
Q ss_pred HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCc
Q psy11047 316 KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTN 395 (943)
Q Consensus 316 KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~Rr 395 (943)
.++.+....++..+-+ |.++|++.++....++ +.+||.-..-...|.+-||.+|.+
T Consensus 146 ~g~~ls~a~~~~f~Hn-----d~~~l~~l~~~~~~~~--~~~iv~egvySmdGd~apl~~l~~----------------- 201 (396)
T d2bwna1 146 EGIKRNAGPKRIFRHN-----DVAHLRELIAADDPAA--PKLIAFESVYSMDGDFGPIKEICD----------------- 201 (396)
T ss_dssp HHHHHSCCCEEEECTT-----CHHHHHHHHHHSCTTS--CEEEEEESBCTTTCCBCCHHHHHH-----------------
T ss_pred hhhhccccCceEeecc-----hHHHhhhHHhhhcccC--ceeEEEEeeccCcccccccHhHHH-----------------
Confidence 9998876677777653 5788888777654333 455555555556799999999999
Q ss_pred hHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCC
Q psy11047 396 FPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGR 475 (943)
Q Consensus 396 fR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ 475 (943)
+|++||. ++.||.|+|-+ .+ | .+|+=.+..+ .-...
T Consensus 202 ---L~~~y~~-------~L~vDeAHs~G-v~--------G---------------------~~G~G~~~~~----~~~~~ 237 (396)
T d2bwna1 202 ---IAEEFGA-------LTYIDEVHAVG-MY--------G---------------------PRGAGVAERD----GLMHR 237 (396)
T ss_dssp ---HHHHHTC-------EEEEECTTTTT-TS--------S---------------------TTSCCHHHHH----TCGGG
T ss_pred ---Hhhhhcc-------eeeeccceeee-ee--------c---------------------cccccchhhc----CCcee
Confidence 9999999 99999999876 32 1 1111111111 01135
Q ss_pred eeEEEEcCCCccCccCc-----chhhhhc-ccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy11047 476 AQNFTIVPSSLLRVKNS-----GALHRTF-NVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHI 549 (943)
Q Consensus 476 ADSItiDpHK~L~vr~~-----~~L~~af-~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I 549 (943)
.|-++...-|.++.-.. ..+.+.+ .....|++.. ..+ +.-+..+-..++.+-... ....
T Consensus 238 ~di~~gTlsKa~g~~Gg~v~~~~~~i~~l~~~~~~~ifSt-------------alp-p~~~aa~~~al~i~~~~~-~~~~ 302 (396)
T d2bwna1 238 IDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFST-------------SLP-PAIAAGAQASIAFLKTAE-GQKL 302 (396)
T ss_dssp CSEEEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHTSB-------------CCC-HHHHHHHHHHHHHHTSHH-HHHH
T ss_pred eeeeeecccccccccccccchhHHHHHHHHhhcchhhhcc-------------cCc-HHHHHHHHHHHHHhhcch-HHHH
Confidence 68999999999992111 1111111 1112232211 011 111111111111111010 1111
Q ss_pred HHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCcc
Q psy11047 550 REIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLG 629 (943)
Q Consensus 550 ~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~ 629 (943)
+.. ....++++...+... ++.+. +....
T Consensus 303 r~~--------------------------------------------------l~~~~~~~~~~l~~~-g~~~~-~~~sp 330 (396)
T d2bwna1 303 RDA--------------------------------------------------QQMHAKVLKMRLKAL-GMPII-DHGSH 330 (396)
T ss_dssp HHH--------------------------------------------------HHHHHHHHHHHHHHH-TCCBC-CCSSS
T ss_pred HHH--------------------------------------------------HHHHHHHHHHHHHhc-CCCcC-CCCCC
Confidence 110 123455555555443 45454 34567
Q ss_pred EEEEEecCCChHHHHHHHHHh-ccCcEEEe----ecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 630 MVVIRLLGENILTEKLLKRLN-SKGRLHCV----PASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 630 iV~Fr~~g~n~l~~~Ll~~L~-~~G~~~~s----~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
|+.+.+ |.+..+..+.++|. ++|. +++ |+.-.+..-+|++++...|.+||++++++|+++
T Consensus 331 Ivpv~i-g~~~~~~~~a~~lL~e~Gi-~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 331 IVPVVI-GDPVHTKAVSDMLLSDYGV-YVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp CEEEEC-CCHHHHHHHHHHHHHHHCE-ECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEe-CCHHHHHHHHHHHHHhCCE-EEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 777776 34445667777754 5675 444 344456678999999999999999999999875
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.05 E-value=7e-09 Score=111.81 Aligned_cols=306 Identities=10% Similarity=-0.040 Sum_probs=175.0
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
-++...++-..+.+.|+++++.+.+ -.+||+|||+++-.+++.. + .+| + .+
T Consensus 27 r~~~f~~i~~~~~~~l~~ll~~~~~----------~i~~~gsgT~a~e~~~~nl----~------~~g--------~-~v 77 (348)
T d1iuga_ 27 RTEAAREVFLKARGLLREAFRTEGE----------VLILTGSGTLAMEALVKNL----F------APG--------E-RV 77 (348)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCSSE----------EEEEESCHHHHHHHHHHHH----C------CTT--------C-EE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCC----------EEEEeCchHHHHHHHHHhc----c------ccc--------c-cc
Confidence 3677778888999999999997643 4789999999975555431 1 112 1 23
Q ss_pred EecCCCchHHHHH--H-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 305 YCSDQAHSSVEKA--G-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 305 ~~S~~aHySv~KA--a-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
++....|++-.-+ + ..|. ++..+..+.....+.++. . ...+..|+.++..|.+|.+.|+++|++
T Consensus 78 lv~~~G~f~~~~~~~a~~~~~-~~~~~~~~~g~~~~~~~~--------~-~~~~~~v~~~h~eTstG~~~~i~~i~~--- 144 (348)
T d1iuga_ 78 LVPVYGKFSERFYEIALEAGL-VVERLDYPYGDTPRPEDV--------A-KEGYAGLLLVHSETSTGALADLPALAR--- 144 (348)
T ss_dssp EEEECSHHHHHHHHHHHHTTC-EEEEEECCTTCCCCTTTS--------C-CSSCSEEEEESEETTTTEECCHHHHHH---
T ss_pred eeecchHHHHHHHHHHHhcCc-ccccccccCCCccccccc--------c-ccCCCeeEEEecchhhhhhccHHHHHH---
Confidence 3445577774222 2 2443 555555543333333221 1 113568999999999999999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcc
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRL 461 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~ 461 (943)
+|++++. ..+++||+..+.+ ...+
T Consensus 145 -----------------~~~~~~~-----~~l~~vDavss~g-~~~i--------------------------------- 168 (348)
T d1iuga_ 145 -----------------AFKEKNP-----EGLVGADMVTSLL-VGEV--------------------------------- 168 (348)
T ss_dssp -----------------HHHHHCT-----TCEEEEECTTTBT-TBCC---------------------------------
T ss_pred -----------------HHHhhhc-----cceeechhhhccc-cccc---------------------------------
Confidence 9999874 1278999976544 2111
Q ss_pred cccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHH
Q psy11047 462 HCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALK 532 (943)
Q Consensus 462 ~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALk 532 (943)
.... ..+|-+...+|||++ ++.+ .+. .....+.|+.-. .+..+.-.+..++
T Consensus 169 ~~d~--------~~iD~~~~~sqK~l~gppG~~~v~~s~~-~le-~~~~~~~~~dl~------~~~~~~~~~~~~~---- 228 (348)
T d1iuga_ 169 ALEA--------MGVDAAASGSQKGLMCPPGLGFVALSPR-ALE-RLKPRGYYLDLA------RELKAQKEGESAW---- 228 (348)
T ss_dssp CSGG--------GTCSEEEEESSSTTCCCSCEEEEEECHH-HHH-TCCCCSSTTCHH------HHHHHHTTTCCSS----
T ss_pred cccc--------ccCCEEEeccccceecCCceeeeeechH-HHh-hhcccccccchh------hhhhhhccCcccc----
Confidence 1111 157999999999995 2221 221 111112222100 0000111122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHH
Q psy11047 533 LWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEA 612 (943)
Q Consensus 533 lW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~ 612 (943)
|....++.|+.+.++.+++. |...++. +......+.+
T Consensus 229 ---Tp~v~~i~~l~~aL~~~~~~---------------~~~~~~~-------------------------~~~~~~~~~~ 265 (348)
T d1iuga_ 229 ---TPAINLVLAVAAVLEEVLPR---------------LEEHLAL-------------------------KAWQNALLYG 265 (348)
T ss_dssp ---CCCHHHHHHHHHHHHHHGGG---------------HHHHHHH-------------------------HHHHHHHHHH
T ss_pred ---cccchHHHHHHHHHHHHHHH---------------HhHHHHH-------------------------HHHHHHHHhh
Confidence 22233445666666664320 1111000 1112223333
Q ss_pred HHhCCCCeEEecCCC-ccEEEEEec-CCChHHHHHHHHHhccCcEEEeec--ccCCCcEEEEeecCCCCHHHHHHHHHHH
Q psy11047 613 LVLGDPRFEIPAARH-LGMVVIRLL-GENILTEKLLKRLNSKGRLHCVPA--SLRIQGLGRAQNFTRTTNDDITRDWNEI 688 (943)
Q Consensus 613 ~L~~~p~~eIl~~~~-l~iV~Fr~~-g~n~l~~~Ll~~L~~~G~~~~s~t--~~~g~~~lR~v~~~~tt~edId~ll~~I 688 (943)
.+. ..++++..+.. ..+++|+++ |.+ ...+.+.|.++|.. +++. .+.+ .++|+...-.++.+||+.+++.|
T Consensus 266 ~~~-~~gl~~~~~~~s~~v~~~~~P~g~~--~~~~~~~l~~~gi~-i~~G~~~l~~-~~~RIg~mG~~~~~d~~~~~~~l 340 (348)
T d1iuga_ 266 VGE-EGGLRPVPKRFSPAVAAFYLPEGVP--YARVKEAFAQRGAV-IAGGQGPLKG-KVFRLSLMGAYDRYEALGVAGMF 340 (348)
T ss_dssp HHH-HTTCEESCSSBCTTCEEEECCTTCC--HHHHHHHHHTTTEE-CEECCGGGTT-TEEEECCCSSCCHHHHHHHHHHH
T ss_pred hhh-hhhhccChhhcCCeEEEEECCCCCC--HHHHHHHHHHCCeE-EEcCccccCC-CEEEEeCCCCCCHHHHHHHHHHH
Confidence 333 34677765433 347899985 444 46788889888854 4321 2334 48999555577899999999999
Q ss_pred HHHHHHHH
Q psy11047 689 RNTATEIL 696 (943)
Q Consensus 689 ~~~~~~ll 696 (943)
+++.++++
T Consensus 341 ~~~l~~~~ 348 (348)
T d1iuga_ 341 REVLEEIL 348 (348)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99887763
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.97 E-value=3.4e-07 Score=101.91 Aligned_cols=369 Identities=13% Similarity=0.057 Sum_probs=216.7
Q ss_pred CCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHH--HHHhccC-cccc
Q psy11047 148 YPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLS--DAINCLG-FTWA 224 (943)
Q Consensus 148 ~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~--~alN~n~-~~~~ 224 (943)
+..+ |+.++.. +..+|+ +.+-.++++.+.++-.....- .+ .|.|-=...--+|+.+.++++ ..++..- ...+
T Consensus 27 ~~~I-P~~~~~~-~~~lp~-~~sE~e~~r~~~~ls~kN~~~-~~-~fig~G~~~~~~p~~i~~~~~~~~~~t~ytPyqpE 101 (437)
T d1wyua1 27 FAHL-PKEILSP-PIDLPE-PLPEWKVLEELRRLAAQNLPA-HK-AFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPE 101 (437)
T ss_dssp GTTS-CGGGSSC-CCCCCC-CCCHHHHHHHHHHHHHTSCCC-TT-CCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGG
T ss_pred HHhc-cHHHhcC-CCCCCC-CCCHHHHHHHHHHHHhCCCCc-Cc-cccCcccCCceeCHHHHHHHhChhhhhhCCCcchH
Confidence 4444 5555422 346663 568889999998875543211 11 232211111124566655543 3455542 2335
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.+-..-++-.+.-.||+++.|++...+ =...|..|-+.|+++++.+.- +-.+
T Consensus 102 ~sQG~Lq~l~e~q~~l~eltGmd~~n~-----------s~~~ga~a~~~~~~~~~~~~~-----------------~~~~ 153 (437)
T d1wyua1 102 VSQGVLQATFEYQTMIAELAGLEIANA-----------SMYDGATALAEGVLLALRETG-----------------RMGV 153 (437)
T ss_dssp GCHHHHHHHHHHHHHHHHHHTSSEECS-----------CBSSHHHHHHHHHHHHHHHHT-----------------CCEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccc-----------CchHHHHHHHHHHHHHHhhhc-----------------cccc
Confidence 565566666678889999999985421 123456667788888775320 1125
Q ss_pred EecCCCchHHHH---HH-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEK---AG-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~K---Aa-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+... +. ..-+.+++.|+.++.+ .+.++ +.+ ....|+.+..+| .|.+.++++|++
T Consensus 154 ~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~-~~~~~----~~~------~~Aavmi~~Pnt-~G~~ed~~~i~~-- 219 (437)
T d1wyua1 154 LVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGR-TPLPE----VGE------EVGAVVVQNPNF-LGALEDLGPFAE-- 219 (437)
T ss_dssp EEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTB-CCCCC----CCT------TEEEEEEESSCT-TSBCCCHHHHHH--
T ss_pred ccccccChHHhhhhhhhcccceeeEEeeeccccc-chhhh----hcc------ceeEEEEccccc-cccccchHHHHH--
Confidence 678888876433 21 2334588899986543 33222 222 367888888766 489999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCc
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGR 460 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~ 460 (943)
++++.|. .+.+|+..-+. ..
T Consensus 220 ------------------~~h~~G~-------l~~~~ad~~al-~~---------------------------------- 239 (437)
T d1wyua1 220 ------------------AAHGAGA-------LFVAVADPLSL-GV---------------------------------- 239 (437)
T ss_dssp ------------------HHHHTTC-------EEEEECCTTGG-GT----------------------------------
T ss_pred ------------------Hhhhccc-------eEEeeechhhh-hc----------------------------------
Confidence 9999998 55554443211 00
Q ss_pred ccccchhhhhcCCCCeeEEEEcCCCccC--------------ccCcchhhhhcccCccccccC--C-CCcccccC--ccc
Q psy11047 461 LHCVPASLRIQGLGRAQNFTIVPSSLLR--------------VKNSGALHRTFNVEPLYLRHE--N-SGLAIDYM--HWQ 521 (943)
Q Consensus 461 ~~~p~~r~~l~Gie~ADSItiDpHK~L~--------------vr~~~~L~~af~~~p~YL~~~--~-~g~~~d~~--~~t 521 (943)
+.++- . -.||-+..+ ||-++ +++ .+.+ .-|..+... + .|. ..+. ..+
T Consensus 240 -l~~Pg-~-----~GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~--~l~r---~lPgrivg~s~d~~G~-~~~~l~lqt 305 (437)
T d1wyua1 240 -LKPPG-A-----YGADIAVGD-GQSLGLPMGFGGPHFGFLATKK--AFVR---QLPGRLVSETVDVEGR-RGFILTLQA 305 (437)
T ss_dssp -BCCHH-H-----HTCSEEEEE-CTTTTCCCGGGCSCCEEEEECG--GGGG---GCCSCCEEEEEBTTSC-EEEEECCGG
T ss_pred -ccccc-c-----cccceEeec-cceeccccCCCcCccccccccc--hhhc---cccccccccccccCCc-ccceeeccc
Confidence 11111 1 268999999 55444 222 1211 112222111 0 111 0000 000
Q ss_pred c--------C----CCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccC
Q psy11047 522 I--------P----LSKR-FRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 588 (943)
Q Consensus 522 i--------e----~SRr-frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~ 588 (943)
- . |+-. .-|+..|+.+..+|.+|+++..+.
T Consensus 306 reqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~------------------------------------- 348 (437)
T d1wyua1 306 REQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALK------------------------------------- 348 (437)
T ss_dssp GSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
T ss_pred ccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHH-------------------------------------
Confidence 0 1 1111 234677888999999999988777
Q ss_pred CCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEEee-cccCCCc
Q psy11047 589 NFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP-ASLRIQG 666 (943)
Q Consensus 589 ~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~-t~~~g~~ 666 (943)
.+..|.++.+.|.+.++++++.+ +.++-++++.. .+ ...+.++|...|...-+. ..+-...
T Consensus 349 --------------a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~-~~--~~~i~k~L~d~G~~~~~~~~~~~~~~ 411 (437)
T d1wyua1 349 --------------SVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP-KD--PEAVRRALAERGFHGATPVPREYGEN 411 (437)
T ss_dssp --------------HHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS-SC--HHHHHHHHHHTTCCCCEECCTTSCSS
T ss_pred --------------HHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECC-CC--HHHHHHHHHhCCCCCCcccccCCCCC
Confidence 35689999999999999998753 44566655543 22 578889999888521111 1233456
Q ss_pred EEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 667 LGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 667 ~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
.+.+.+.-..|++|||+++++++++
T Consensus 412 ~lli~~TE~~tkeeiD~~v~al~ei 436 (437)
T d1wyua1 412 LALFAATELHEEEDLLALREALKEV 436 (437)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHh
Confidence 7888777788999999999999876
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=98.96 E-value=9.5e-08 Score=103.61 Aligned_cols=144 Identities=10% Similarity=-0.020 Sum_probs=108.3
Q ss_pred HHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhccc
Q psy11047 210 DMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQS 289 (943)
Q Consensus 210 d~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~ 289 (943)
+.+...++........+|.+.++|+ .+|+++|.+. .++|++||.|+..||.+.
T Consensus 17 ~~~~~~l~~g~~~~~~g~~v~~fE~----~~a~~~g~~~------------~v~~~SGt~Al~lal~~l----------- 69 (384)
T d1b9ha_ 17 NGLVRALEQGQWWRMGGDEVNSFER----EFAAHHGAAH------------ALAVTNGTHALELALQVM----------- 69 (384)
T ss_dssp HHHHHHHHTSCCBTTTCSHHHHHHH----HHHHHTTCSE------------EEEESCHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHcCCeeecCCHHHHHHHH----HHHHHHCcCe------------EEEeCCHHHHHHHHHHHc-----------
Confidence 3455556665444467899999997 5588888863 689999999999988752
Q ss_pred CCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccc
Q psy11047 290 HPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFL 368 (943)
Q Consensus 290 ~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tG 368 (943)
++ .+.-.|+++..++.++..|...-+..++.++++ .++.||++.+++.+... +..| ..+...|
T Consensus 70 --~~-----~~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~------tk~i---~~~~~~g 133 (384)
T d1b9ha_ 70 --GV-----GPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPR------TKVI---MPVHMAG 133 (384)
T ss_dssp --TC-----CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTT------EEEE---CCBCGGG
T ss_pred --CC-----CCCCEEEEeccccccccccccccccccccccccccccccchhhhccccccc------cccc---ccccccc
Confidence 11 122347889999999999885433467777766 47899999999988765 3333 3456777
Q ss_pred ccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 369 VVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 369 aIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
..-++.+|.+ +|+++|+ ++..|+|++-+
T Consensus 134 ~~~d~~~i~~--------------------~~~~~~i-------~lieD~a~a~g 161 (384)
T d1b9ha_ 134 LMADMDALAK--------------------ISADTGV-------PLLQDAAHAHG 161 (384)
T ss_dssp CCCCHHHHHH--------------------HHHHHTC-------CBCEECTTCTT
T ss_pred cccccccchh--------------------hhhhhhh-------hhhhhhceecc
Confidence 7888999999 9999999 99999998765
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=98.94 E-value=5.5e-08 Score=105.16 Aligned_cols=156 Identities=9% Similarity=-0.026 Sum_probs=106.6
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+-+.+..++......|.......++=..+.+|+.+..|++-. ....++|+|++++...++.+- +
T Consensus 48 v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~--------~~~i~it~G~~~al~~~~~~~----~---- 111 (388)
T d1j32a_ 48 IVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYG--------ADNILVTNGGKQSIFNLMLAM----I---- 111 (388)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC--------GGGEEEESHHHHHHHHHHHHH----C----
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCC--------CceEEEcCCHHHHHHHHHHHH----h----
Confidence 445555555543333444444455666778888888887633 136899999999987766431 1
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
.|| -.|++.+-++.....++.+-+..++.++.+ +.+.+|.++|+++++.. +.+++.+-..+
T Consensus 112 --~~g---------d~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~~~~~~P~N 174 (388)
T d1j32a_ 112 --EPG---------DEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPK------TKLLVFNTPSN 174 (388)
T ss_dssp --CTT---------CEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCT
T ss_pred --CCC---------CEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCC------CeEEEECCCCC
Confidence 233 235666667777777665433466777764 45689999999988653 55666777789
Q ss_pred ccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 366 AFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 366 ~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-||.+-+ +++|.+ +|+++|+ |+..|.+|+..
T Consensus 175 PTG~~~~~~~~~~l~~--------------------~~~~~~~-------~iI~De~Y~~~ 208 (388)
T d1j32a_ 175 PTGMVYTPDEVRAIAQ--------------------VAVEAGL-------WVLSDEIYEKI 208 (388)
T ss_dssp TTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEECTTTTC
T ss_pred CCCcccchhhhhhhhc--------------------ccccCCe-------EEEchhhhhcc
Confidence 9998866 556666 8999999 99999999765
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.93 E-value=4.1e-07 Score=102.19 Aligned_cols=386 Identities=13% Similarity=0.050 Sum_probs=216.2
Q ss_pred hhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccc---cCChhHH
Q psy11047 154 GYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTW---ASSPACT 230 (943)
Q Consensus 154 ~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~---~~SPaat 230 (943)
+.++..-+..+|+ .+--++++++.++.........+..+.|..+- --.|++. +.++..+.. -..| +.|-..-
T Consensus 31 ~~~~~~~~l~LP~--~sE~El~r~~~~la~kN~~~~~~~~~lG~~~~-hy~P~v~-~~~~~~~Ta-YTPYQPaEiSQG~L 105 (471)
T d1wyub1 31 KEHLREVPPRLPE--VDELTLVRHYTGLSRRQVGVDTTFYPLGSCTM-KYNPKLH-EEAARLFAD-LHPYQDPRTAQGAL 105 (471)
T ss_dssp GGGBCSSCCCCCC--CCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCC-CCCCHHH-HHHHHTTSS-CCTTSCGGGCHHHH
T ss_pred HHHHcCCCCCCCC--CCHHHHHHHHHHHHhCCCCccccccCCccccC-ccCcchh-hhHHHHHhc-cCCCCCHHHHHHHH
Confidence 3343333446773 78889999999876655333345555552110 0123333 333333321 1222 2244443
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
++=.+--.++++|.|++-.. .-.-.|..|...|+++|+....++ +- .....+++.+...
T Consensus 106 QalfEfQtmi~eLTGMdvaN-----------aS~yDGatA~aeA~~ma~r~~~~~------~~----~~~~~~~~~~~~~ 164 (471)
T d1wyub1 106 RLMWELGEYLKALTGMDAIT-----------LEPAAGAHGELTGILIIRAYHEDR------GE----GRTRRVVLVPDSA 164 (471)
T ss_dssp HHHHHHHHHHHHHHTCSEEE-----------CCCSSHHHHHHHHHHHHHHHHHHT------TC----TTTCCEEEEETTS
T ss_pred HHHHHHHHHHHHHhCCCccc-----------cccchHHHHHHHHHHHHHHHhhhc------cc----ccccccccCCccc
Confidence 44445556899999998531 112234445567777776533221 10 0122345556666
Q ss_pred chHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccc
Q psy11047 311 HSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 311 HySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i 390 (943)
|.........+...++.++.+..+..+.+.+...+..+ ...++.+..++..+..+...++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~a~v~v~~p~~~g~~e~~~~~~~~------------ 226 (471)
T d1wyub1 165 HGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGPH------VAALMLTNPNTLGLFERRILEISR------------ 226 (471)
T ss_dssp CTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTT------EEEEEECSSCTTSCCCTTHHHHHH------------
T ss_pred ccceeeeeecccceeecccccccccccchhhhhhhhcc------ccceeeccCCCcccccchhhhhHH------------
Confidence 66555555555567888888889999999999876655 445565555554444455888888
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhh
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRI 470 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l 470 (943)
++++.|. .+++|++--.. ..- +.++
T Consensus 227 --------~~h~~g~-------~~~~~~~~~~~-~~~----------------------------------l~~p----- 251 (471)
T d1wyub1 227 --------LCKEAGV-------QLYYDGANLNA-IMG----------------------------------WARP----- 251 (471)
T ss_dssp --------HHHHHTC-------EEEEEGGGGGG-TTT----------------------------------TCCH-----
T ss_pred --------HHHhccc-------cccccccchhh-hhh----------------------------------cccc-----
Confidence 8888887 67777763322 110 1111
Q ss_pred cCCCCeeEEEEcCCCccCcc------------CcchhhhhcccCccccccCCCCcc-cccCccccC----CCCC-cchHH
Q psy11047 471 QGLGRAQNFTIVPSSLLRVK------------NSGALHRTFNVEPLYLRHENSGLA-IDYMHWQIP----LSKR-FRALK 532 (943)
Q Consensus 471 ~Gie~ADSItiDpHK~L~vr------------~~~~L~~af~~~p~YL~~~~~g~~-~d~~~~tie----~SRr-frALk 532 (943)
|-..+|-++++-|+.++++ .+..+.+.+.. ..+.....+.. .-.+.-.+- |+-. .-|+.
T Consensus 252 -~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PG--RiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~ 328 (471)
T d1wyub1 252 -GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPV--PLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVR 328 (471)
T ss_dssp -HHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCS--CEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHH
T ss_pred -CcccccccccccccccccccccccccccceeehhhhhccCCC--ceecCCCccccccCCCcccccchhhhhhhHHHHHH
Confidence 1125788889989987721 11122221110 01111100000 000111110 1111 12457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHH
Q psy11047 533 LWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEA 612 (943)
Q Consensus 533 lW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~ 612 (943)
.|..+..+|.+|+++.-+.+ ++.|.|+++
T Consensus 329 A~vYlsllG~~GL~elA~~~---------------------------------------------------~~~A~Yla~ 357 (471)
T d1wyub1 329 AWAYIRTLGLEGLKKAAALA---------------------------------------------------VLNARYLKE 357 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------------------------------------------HHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHH---------------------------------------------------HHHHHHHHH
Confidence 77789999999999988883 567888888
Q ss_pred HHhCCCCeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEEeecc-c--CCCcEEEEeecCCCCHHHHHHHHHHH
Q psy11047 613 LVLGDPRFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS-L--RIQGLGRAQNFTRTTNDDITRDWNEI 688 (943)
Q Consensus 613 ~L~~~p~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~-~--~g~~~lR~v~~~~tt~edId~ll~~I 688 (943)
.|+. +++++..+ +-++-..++.+. +.-...+.++|...|..- ++. + .+...+-+.+--.+|++|||+++++|
T Consensus 358 ~L~~-~G~~~~~~~~ff~EFvv~~~~-~~~~~~i~k~L~~~G~~~--~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL 433 (471)
T d1wyub1 358 LLKE-KGYRVPYDGPSMHEFVAQPPE-GFRALDLAKGLLELGFHP--PTVYFPLIVKEALMVEPTETEAKETLEAFAEAM 433 (471)
T ss_dssp HHHH-TTCBCSSCSSCCSCEEEBCST-TCCHHHHHHHHHHTTCCC--CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHH
T ss_pred HHhh-cCceeccCcceeeEEeecCCC-CCCHHHHHHHHHHcCCCC--CcccCcCCCCCeEEEecCCCCCHHHHHHHHHHH
Confidence 8854 89998653 344554444432 112456788888888632 221 2 23456667555667899999999999
Q ss_pred HHHHHHHH
Q psy11047 689 RNTATEIL 696 (943)
Q Consensus 689 ~~~~~~ll 696 (943)
+++.+++.
T Consensus 434 ~~i~~e~~ 441 (471)
T d1wyub1 434 GALLKKPK 441 (471)
T ss_dssp HHHHTSCH
T ss_pred HHHHHhhH
Confidence 99987763
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=1.9e-07 Score=99.04 Aligned_cols=135 Identities=7% Similarity=-0.150 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
.++.+.+.+|+++.+|++-+. ...++|+|+|+++..++.+. + .|| -.|++.+-
T Consensus 38 ~~lr~~ia~~~~~~~g~~~~~--------~~i~it~G~~~~l~~~~~~l----~------~~g---------d~Vlv~~P 90 (361)
T d1d2fa_ 38 DEFLAAIAHWFSTQHYTAIDS--------QTVVYGPSVIYMVSELIRQW----S------ETG---------EGVVIHTP 90 (361)
T ss_dssp HHHHHHHHHHHHHHSCCCCCG--------GGEEEESCHHHHHHHHHHHS----S------CTT---------CEEEEEES
T ss_pred HHHHHHHHHHHHHHhCCCCCc--------ceEEEeCCHHHHHHHHhhhc----c------ccc---------cccccccc
Confidence 456677888999998886331 36899999999986554431 1 122 23555666
Q ss_pred CchHHHHHHHHCCccEEEEecC---CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccc
Q psy11047 310 AHSSVEKAGLIGLVNMRYIESD---DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVK 383 (943)
Q Consensus 310 aHySv~KAa~LG~~~v~~Vp~D---~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~ 383 (943)
.|.....+...-+..++.++.+ +.+.+|.+++++.+... .+.+++.+.-.+-||.+-+ +.+|.+
T Consensus 91 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~-----~~~~i~l~~p~NPTG~~~s~~~~~~i~~----- 160 (361)
T d1d2fa_ 91 AYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIMAD----- 160 (361)
T ss_dssp CCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTST-----TEEEEEEESSCTTTCCCCCTTHHHHHHH-----
T ss_pred cccchhHHHHhhcceEEeecccccccccccccccchhhcccC-----CceeEEecccccccccccchhhhhhhhh-----
Confidence 7777776665444466666653 45579999999988653 2556777777888997755 667777
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|.+|+.+
T Consensus 161 ---------------~~~~~~~-------~lI~De~y~~~ 178 (361)
T d1d2fa_ 161 ---------------LCERHGV-------RVISDEIHMDM 178 (361)
T ss_dssp ---------------HHHHTTC-------EEEEECTTTTC
T ss_pred ---------------hhhhhhe-------eeeeccccccc
Confidence 9999999 99999999865
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=98.85 E-value=1.8e-07 Score=99.48 Aligned_cols=125 Identities=10% Similarity=0.019 Sum_probs=89.3
Q ss_pred HHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHH
Q psy11047 237 MNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEK 316 (943)
Q Consensus 237 i~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~K 316 (943)
++.+|+.++++.+ ..++|+|||+++..++.+- . .+| + .|++++-+|.....
T Consensus 67 r~aiA~~~~~~~~----------~Iiit~G~~~al~~~~~~l----~------~~~--------d-~v~~~~p~~~~~~~ 117 (368)
T d1v2da_ 67 REALAEEFAVEPE----------SVVVTSGATEALYVLLQSL----V------GPG--------D-EVVVLEPFFDVYLP 117 (368)
T ss_dssp HHHHHHHHTSCGG----------GEEEESSHHHHHHHHHHHH----C------CTT--------C-EEEEEESCCTTHHH
T ss_pred HHHHHhhcccCCc----------ceeeccchHHHHHHHhhcc----c------ccc--------c-cccccCCcchhhhh
Confidence 4556777888765 6899999999997776542 1 111 2 35555556666666
Q ss_pred HHHHCCccEEEEecC---CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccc
Q psy11047 317 AGLIGLVNMRYIESD---DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 317 Aa~LG~~~v~~Vp~D---~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i 390 (943)
.+...+..++.++.+ +.+.+|.+.|++++... +.+++.+...+.||.+-+ +++|.+
T Consensus 118 ~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~p~NPtG~~~~~~~l~~l~~------------ 179 (368)
T d1v2da_ 118 DAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPR------TRALLLNTPMNPTGLVFGERELEAIAR------------ 179 (368)
T ss_dssp HHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHH------------
T ss_pred HHHhcCCccceeccccccccccCCHHHHHHhhccC------ceEEEEcCCCCcccccCCHHHHHHHHH------------
Confidence 664433455555543 56789999999988764 456666777899998866 677777
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |++.|++|+..
T Consensus 180 --------~a~~~~i-------~ii~D~~~~~~ 197 (368)
T d1v2da_ 180 --------LARAHDL-------FLISDEVYDEL 197 (368)
T ss_dssp --------HHHHTTC-------EEEEECTTTTC
T ss_pred --------HHHHcCC-------eeeechhhhhh
Confidence 9999999 99999998755
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.81 E-value=2e-07 Score=99.68 Aligned_cols=159 Identities=12% Similarity=-0.012 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 206 SLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 206 silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
..+-+.+..+++.....|.......++-..+.+|+.+..+.... .....++|+|++++...++.+-
T Consensus 41 ~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~-------~~~~i~~t~G~~~~l~~~~~~l------- 106 (388)
T d1gdea_ 41 QHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEAD-------PKTEIMVLLGANQAFLMGLSAF------- 106 (388)
T ss_dssp HHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC-------TTTSEEEESSTTHHHHHHHTTT-------
T ss_pred HHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCC-------ChheeeeccCcchHHHHHHHHh-------
Confidence 34445555555543333443334567777777888776665321 1236899999999987776531
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
..|| -.|++.+-++.....++.+-+.+++.+|.+ +++.+|+++|++++... +.+++.+..
T Consensus 107 ---~~~g---------d~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~P 168 (388)
T d1gdea_ 107 ---LKDG---------EEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSP 168 (388)
T ss_dssp ---CCTT---------CEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTT------EEEEEEESS
T ss_pred ---cCCC---------CEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCccC------CeEEEECCC
Confidence 0122 235555567766677775333478888875 45689999999888653 556667777
Q ss_pred CCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+-+|.+-+ +.+|.+ +|++|++ ++..|.+|+.+
T Consensus 169 ~NPtG~~~s~~~~~~l~~--------------------~a~~~~~-------~vi~De~y~~~ 204 (388)
T d1gdea_ 169 CNPTGAVLTKKDLEEIAD--------------------FVVEHDL-------IVISDEVYEHF 204 (388)
T ss_dssp CTTTCCCCCHHHHHHHHH--------------------HHHHTTC-------EEEEECTTTTC
T ss_pred cCCCCCcCCHHHHHHHHH--------------------HHHHcCC-------EEEEEcCChhh
Confidence 888998854 667777 9999999 99999999865
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=98.79 E-value=3.8e-07 Score=98.93 Aligned_cols=165 Identities=12% Similarity=-0.002 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhccC---ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINCLG---FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTE 281 (943)
Q Consensus 205 ~silgd~L~~alN~n~---~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~ 281 (943)
...+.+.+..++.... ..|.......+|-..+.+|+.+..|++.- +....++|+|+++++..++.+-
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~-------~~~~I~it~G~~~al~~~~~~~--- 124 (420)
T d1vp4a_ 55 RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGL-------DEDNLIFTVGSQQALDLIGKLF--- 124 (420)
T ss_dssp HHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSC-------CGGGEEEEEHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCC-------CHHHeEeccchhhhHHHHHHhh---
Confidence 4555566655554321 23444444567888889999999887521 0136899999999987665531
Q ss_pred HHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccC---CCcEEE
Q psy11047 282 AIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKH---LIPFFI 358 (943)
Q Consensus 282 ~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG---~~P~~V 358 (943)
. .|| -.|++.+-.+.....++...+..++.+|.++. .+|.+.++..+.+..... ....++
T Consensus 125 -~------~~G---------d~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 187 (420)
T d1vp4a_ 125 -L------DDE---------SYCVLDDPAYLGAINAFRQYLANFVVVPLEDD-GMDLNVLERKLSEFDKNGKIKQVKFIY 187 (420)
T ss_dssp -C------CTT---------CEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-EECHHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred -h------ccc---------cccccccccccchhHHHHHHhhhccccccccc-ccccchhhhhhhhhHHHhhccccceee
Confidence 1 122 23555666777666666554458889998654 589999988776543322 223344
Q ss_pred EEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 359 FSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 359 VaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+-..+-+|.+-+ +++|++ +|++|++ |+..|.+|...
T Consensus 188 ~~~~p~NPtG~~~s~~~~~~i~~--------------------~a~~~~i-------~ii~De~y~~l 228 (420)
T d1vp4a_ 188 VVSNFHNPAGVTTSLEKRKALVE--------------------IAEKYDL-------FIVEDDPYGAL 228 (420)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHH--------------------HHHHTTC-------EEEEECSSTTC
T ss_pred EecCCCCccchhhhhhhhhhhhh--------------------hhhcccc-------cccccchhhhc
Confidence 45556677888755 667777 9999999 99999999765
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=4.8e-07 Score=96.05 Aligned_cols=109 Identities=10% Similarity=-0.020 Sum_probs=78.8
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++++++|+.+|++.+ ..++|+|+++++..++.+-. .|| +-+|+++.-+....
T Consensus 60 ~Lr~~ia~~~gv~pe----------~I~it~Gs~eai~~~~~~~~----------~pg--------d~~Vl~~~P~y~~~ 111 (354)
T d1fg7a_ 60 AVIENYAQYAGVKPE----------QVLVSRGADEGIELLIRAFC----------EPG--------KDAILYCPPTYGMY 111 (354)
T ss_dssp HHHHHHHHHHTSCGG----------GEEEESHHHHHHHHHHHHHC----------CTT--------TCEEEECSSSCTHH
T ss_pred HHHHHHHHHhCCChH----------HeeeccCchHHHHHHHHHhh----------ccc--------cccccccccccccc
Confidence 467889999999875 68999999999877765421 122 33466666666666
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
..++.+.+..++.++.++++.+|.++++..+. .+.+|+.+-..+.+|.+-+-+++..
T Consensus 112 ~~~~~~~g~~v~~~~~~~~~~~d~~~l~~~~~-------~~~~v~~~~pnNPtG~~~~~~~~~~ 168 (354)
T d1fg7a_ 112 SVSAETIGVECRTVPTLDNWQLDLQGISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRT 168 (354)
T ss_dssp HHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred hhhhhccCceeeccccccccccchhhhhhccc-------ccceeeccCCCccceeEeeeccccc
Confidence 66665544578889998999999999887653 1567888888899998876544433
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=98.75 E-value=1.2e-06 Score=95.60 Aligned_cols=142 Identities=12% Similarity=0.083 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
.+|=..+.+|+.+..|..-.. .....++|+|+|+++..++.+- . .|| + .|++.+-
T Consensus 87 ~~LR~aiA~~l~~~~~~~~~~------~pe~I~it~G~~~al~~~~~~l----~------~pG--------d-~Vlv~~P 141 (431)
T d1m7ya_ 87 PAFKKAMVDFMAEIRGNKVTF------DPNHLVLTAGATSANETFIFCL----A------DPG--------E-AVLIPTP 141 (431)
T ss_dssp HHHHHHHHHHHHHHTTTSSCC------CGGGEEEEEHHHHHHHHHHHHH----C------CTT--------C-EEEEEES
T ss_pred HHHHHHHHHHHHHHhCCCCCC------CcceEEECCCHHHHHHHHHHHh----c------CCC--------C-EEEEeCC
Confidence 356567788888888743210 0136899999999987776641 1 233 2 3556666
Q ss_pred CchHHHHHHH-HCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccc
Q psy11047 310 AHSSVEKAGL-IGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVK 383 (943)
Q Consensus 310 aHySv~KAa~-LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~ 383 (943)
.+......+. .++..++.|+++. .+.+|.+++++.+.+...++..+.+++.+-..+-+|.+-+ +++|.+
T Consensus 142 ~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~----- 216 (431)
T d1m7ya_ 142 YYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLS----- 216 (431)
T ss_dssp CCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHH-----
T ss_pred CchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccc-----
Confidence 6666666664 4556788888764 4679999999999988778877888888888889998855 667777
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+..
T Consensus 217 ---------------~a~~~~~-------~vI~De~Y~~~ 234 (431)
T d1m7ya_ 217 ---------------FVEDKGI-------HLISDEIYSGT 234 (431)
T ss_dssp ---------------HHHHHTC-------EEEEECTTGGG
T ss_pred ---------------cccccCc-------ceeeccccccc
Confidence 9999999 99999999865
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=98.70 E-value=1.6e-06 Score=92.99 Aligned_cols=163 Identities=13% Similarity=-0.020 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhccC---ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINCLG---FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEA 282 (943)
Q Consensus 206 silgd~L~~alN~n~---~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~ 282 (943)
..+.+.+..++.... ..|.......++...+.+|+.+..|++-. ....++|+|+++++..++.+-.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~--------~~~I~it~G~~~al~~~~~~l~--- 115 (403)
T d1wsta1 47 ETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMS--------KVEIMTVAGSQQALDLIGRVFL--- 115 (403)
T ss_dssp HHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCT--------TCEEEEESSHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCC--------hHHeeecccchHHHHHHHHHHh---
Confidence 344455555443221 22444444567888899999999887632 1468999999999977665411
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhcc-CCCcEEEEEe
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKK-HLIPFFIFSG 361 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~k-G~~P~~VVaT 361 (943)
.+| -.|++.+-++......+...+.++..|+.++.+. +...+.........+ ...+.+++.+
T Consensus 116 -------~~g---------d~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (403)
T d1wsta1 116 -------NPG---------DPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGM-RVDLLEEKLEELRKQGKRVKIVYTVS 178 (403)
T ss_dssp -------CTT---------CEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEE-CHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred -------hcC---------CccccCCCcchhhhHHHhhccccceeEeecccCC-ccccccccchhhhhcccccccccccc
Confidence 122 2355666678877777765455788888865443 333333333222222 2335566666
Q ss_pred cCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 362 LALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 362 aGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
...+-+|.+-+ +++|++ +|++|++ ++..|.+|+..
T Consensus 179 ~p~NPtG~~~s~~~l~~i~~--------------------~a~~~~~-------~li~De~y~~l 216 (403)
T d1wsta1 179 TFQNPAGVTMSVDRRKKLLE--------------------LANEYDF-------LIVEDGPYSEL 216 (403)
T ss_dssp SSCTTTCCCCCHHHHHHHHH--------------------HHHHTTC-------EEEEECTTTTC
T ss_pred ccCCCCCccCCHHHHHHHHH--------------------HHHhcCc-------eeccccchhhe
Confidence 77788887755 667777 9999999 99999999765
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=98.70 E-value=9.4e-07 Score=96.50 Aligned_cols=142 Identities=11% Similarity=0.035 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
.+|-..+.+|+.+..|..-.. +....++|+|+|+++..++.+- ..|| -.|++..-
T Consensus 86 ~~LR~aiA~~l~~~~~~~~~~------~~e~Ivit~G~~~al~~~~~~l----------~~~G---------d~Vlv~~P 140 (428)
T d1iaya_ 86 PEFRKAIAKFMEKTRGGRVRF------DPERVVMAGGATGANETIIFCL----------ADPG---------DAFLVPSP 140 (428)
T ss_dssp HHHHHHHHHHHHHHTTTCSCC------CTTSCEEEEHHHHHHHHHHHHH----------CCTT---------CEEEEESS
T ss_pred HHHHHHHHHHHHHHhCCCCCC------ChhhEEEcCCHHHHHHHHHHHh----------CCCC---------CEEEEccC
Confidence 466667888999888754210 1136799999999987776541 1233 23566666
Q ss_pred CchHHHHHHH-HCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccc
Q psy11047 310 AHSSVEKAGL-IGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVK 383 (943)
Q Consensus 310 aHySv~KAa~-LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~ 383 (943)
+|.+....+. .++.+++.|+++ +++.+|.++++++++.....+..+.+++.+-..+-+|.+-+ +++|.+
T Consensus 141 ~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~----- 215 (428)
T d1iaya_ 141 YYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLS----- 215 (428)
T ss_dssp CCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHH-----
T ss_pred CchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhhe-----
Confidence 7777777664 456688888876 46789999999988876666766778888888889998866 667777
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+..
T Consensus 216 ---------------~a~~~~~-------~vI~De~Y~~~ 233 (428)
T d1iaya_ 216 ---------------FTNQHNI-------HLVCDEIYAAT 233 (428)
T ss_dssp ---------------HHHTTTC-------EEEEECTTGGG
T ss_pred ---------------eeccCcE-------EEEeccccccc
Confidence 9999999 99999999865
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=98.68 E-value=1e-06 Score=94.97 Aligned_cols=154 Identities=8% Similarity=-0.103 Sum_probs=105.4
Q ss_pred HHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcc
Q psy11047 209 GDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQ 288 (943)
Q Consensus 209 gd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~ 288 (943)
-+.+..+++.+...|.. + ..+|-..+.+|+.+..|++-.. ...++|+|++++...++.+. +
T Consensus 50 ~~al~~~~~~~~~~Y~~-g-~~~Lr~aia~~~~~~~g~~~~~--------~~I~vt~G~~~al~~~~~~~----~----- 110 (394)
T d1c7na_ 50 IEGLKKYLDETVLGYTG-P-TEEYKKTVKKWMKDRHQWDIQT--------DWIINTAGVVPAVFNAVREF----T----- 110 (394)
T ss_dssp HHHHHHHHHHCCCSSBC-C-CHHHHHHHHHHHHHHHCCCCCG--------GGEEEESSHHHHHHHHHHHH----C-----
T ss_pred HHHHHHHHhCCCcCCCC-C-CHHHHHHHHHHHHHhcCCCCCC--------cceEeeccchhhhhhhhccc----c-----
Confidence 34555555543333432 2 3478889999999998886431 36899999999998887652 1
Q ss_pred cCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEec---CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 289 SHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIES---DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 289 ~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~---D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
.|| + .|++..-.++....+....+...+.++. +..+.+|.+.++..+... .+.+++.+-..+
T Consensus 111 -~pg--------d-~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~i~l~~P~N 175 (394)
T d1c7na_ 111 -KPG--------D-GVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHN 175 (394)
T ss_dssp -CTT--------C-EEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCT-----TEEEEEEESSBT
T ss_pred -ccc--------c-ccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhccc-----cceEEEeccccc
Confidence 132 2 2455566777777776544445555543 455678888888776432 256777788889
Q ss_pred ccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 366 AFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 366 ~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-||.+-+ +++|.+ +|+++++ |+..|.+|...
T Consensus 176 PTG~v~s~~~l~~l~~--------------------~a~~~~~-------~ii~De~Y~~~ 209 (394)
T d1c7na_ 176 PVGRVWKKDELQKIKD--------------------IVLKSDL-------MLWSDEIHFDL 209 (394)
T ss_dssp TTTBCCCHHHHHHHHH--------------------HHHHSSC-------EEEEECTTTTC
T ss_pred ccceeccHHHhhhhhc--------------------cccccce-------eEecccccccc
Confidence 9999966 566677 8999999 99999999865
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=98.63 E-value=1.7e-06 Score=92.55 Aligned_cols=156 Identities=10% Similarity=-0.026 Sum_probs=105.9
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+-+.+..+++.....|..+....++-..+.+|+.+..|++-. ....++|+|++++...++.+- +
T Consensus 49 i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~--------~~~i~it~G~~~al~~~~~~l----~---- 112 (382)
T d1b5pa_ 49 VKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVT--------PEETIVTVGGSQALFNLFQAI----L---- 112 (382)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCC--------GGGEEEESHHHHHHHHHHHHH----C----
T ss_pred HHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccc--------cccceecCCHHHHHHHHHHHh----C----
Confidence 345555555544444544444567777888888888776532 136899999999986665431 1
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
.+| + .|++.+-++.....++...+..++.++.+ +...+|.++|++++... +.+++.+-..+
T Consensus 113 --~~g--------d-~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~P~N 175 (382)
T d1b5pa_ 113 --DPG--------D-EVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNN 175 (382)
T ss_dssp --CTT--------C-EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTT------EEEEEEESSCT
T ss_pred --CCC--------C-EEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCC------CeEEEECCCCC
Confidence 122 2 35555556666666665444578888865 35688999998877543 45566666788
Q ss_pred ccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 366 AFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 366 ~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-||.+-+ +++|.+ +|++|++ |+-.|.+|+..
T Consensus 176 PTG~~~s~~~~~~l~~--------------------~~~~~~~-------~ii~De~y~~~ 209 (382)
T d1b5pa_ 176 PTGAVYPKEVLEALAR--------------------LAVEHDF-------YLVSDEIYEHL 209 (382)
T ss_dssp TTCCCCCHHHHHHHHH--------------------HHHHTTC-------EEEEECTTTTC
T ss_pred CcchhCCHHHHHHHHH--------------------HHHHcCe-------EEEEEccccce
Confidence 8998855 667777 9999999 99999999865
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=98.59 E-value=3.9e-06 Score=88.59 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=54.9
Q ss_pred HHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccC--CCcEEEEeecCCCCHHHHHH
Q psy11047 606 LAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR--IQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 606 LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~--g~~~lR~v~~~~tt~edId~ 683 (943)
..+++.+.+.+++++++. +...+-+.++++.. ..++.++|.++|.+....+... +..++|+++. +++|+++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~~~---~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~---~~~e~~~ 346 (355)
T d1lc5a_ 274 EGARFYQALCQLPLLTVY-PGRANYLLLRCERE---DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNER 346 (355)
T ss_dssp HHHHHHHHHHTSTTEEEC-CCSSSEEEEEESCT---TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEC-CCCCEEEEEECCCC---HHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC---CHHHHHH
Confidence 345667778888898864 56667677777542 2467788888885433323333 3679999664 6899999
Q ss_pred HHHHHHHH
Q psy11047 684 DWNEIRNT 691 (943)
Q Consensus 684 ll~~I~~~ 691 (943)
++++|+++
T Consensus 347 li~aL~~i 354 (355)
T d1lc5a_ 347 LLAALRNV 354 (355)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=98.57 E-value=2.1e-06 Score=91.84 Aligned_cols=134 Identities=8% Similarity=-0.096 Sum_probs=102.9
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.+..+|.+.++|+ .+++++|.. ..++|++||.|+..||.+... .+| .+
T Consensus 26 ~~~~G~~v~~fE~----~~~~~~g~k------------~ai~~~Sgt~Al~~al~al~~---------~~~-------~~ 73 (371)
T d2fnua1 26 QLTQGKRSLLFEE----ALCEFLGVK------------HALVFNSATSALLTLYRNFSE---------FSA-------DR 73 (371)
T ss_dssp CCSSSHHHHHHHH----HHHHHHTCS------------EEEEESCHHHHHHHHHHHSSC---------CCT-------TS
T ss_pred CccCCHHHHHHHH----HHHHHHCcC------------eEEEEecHHHHHHHHHHHhcc---------cCC-------CC
Confidence 4556899999997 568888885 368999999999988875210 011 22
Q ss_pred eEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 302 LVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
..|+++..++.++.-|...-+...+.+++|.+..++.+++++.+... +.+|+++ ...|..-++.+|.+
T Consensus 74 ~eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~~~~~~~~~~~~~~~~~------t~avi~v---h~~G~~~~~~~i~~--- 141 (371)
T d2fnua1 74 NEIITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINER------TKAIVSV---DYAGKSVEVESVQK--- 141 (371)
T ss_dssp CEEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTT------EEEEEEE---CGGGCCCCHHHHHH---
T ss_pred CeeecccccccccceeeeccCcccccccccccccccchhhhhhccch------hhccccc---cccccccccccccc---
Confidence 35788999999999888654448888899988888888776665543 5556554 57788888999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.-|+|++-+
T Consensus 142 -----------------~~~~~~i-------~lIEDaaqa~G 159 (371)
T d2fnua1 142 -----------------LCKKHSL-------SFLSDSSHALG 159 (371)
T ss_dssp -----------------HHHHHTC-------EEEEECTTCTT
T ss_pred -----------------cccccch-------hhccchhhccC
Confidence 9999999 99999998765
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.57 E-value=3.3e-07 Score=98.54 Aligned_cols=123 Identities=18% Similarity=0.220 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec-CCCc
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS-DQAH 311 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S-~~aH 311 (943)
+..+.+..++.++..+. ...++|+||++||+.++.+ . . + ++-+++++ ..+|
T Consensus 52 ~~~l~~~~~~~~~~~~~---------e~~~~~~~~~~a~~~~l~a-l----~------~--------~~~vi~~~~~~~~ 103 (366)
T d2aeua1 52 AEKVNEYGLKHLGGDEN---------DKCVGFNRTSSAILATILA-L----K------P--------KKVIHYLPELPGH 103 (366)
T ss_dssp HHHHHHHHHHHHTCCTT---------EEEEEESSHHHHHHHHHHH-H----C------C--------SEEEEECSSSSCC
T ss_pred HHHHHHHHHHHccCCCc---------cEEEEeCCHHHHHHHHHHH-h----C------C--------CCEEEEecCCCcc
Confidence 34455555666765543 3578999999999877754 1 1 1 23345555 4689
Q ss_pred hHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC-cccccccHHHhhhhccccccccccc
Q psy11047 312 SSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP-AFLVVDSYCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 312 ySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT-~tGaIDpL~eIa~~~~~~d~~~~~i 390 (943)
.|+..++.+.+.+ .+..+ |+++|+++|+++ +.+++.+...+ ..+.+.++++|++
T Consensus 104 ~~~~~~~~l~g~~--~v~~~-----d~e~l~~~i~~~------tk~i~~~~p~n~~~~~~~~l~~i~~------------ 158 (366)
T d2aeua1 104 PSIERSCKIVNAK--YFESD-----KVGEILNKIDKD------TLVIITGSTMDLKVIELENFKKVIN------------ 158 (366)
T ss_dssp THHHHHHHHTTCE--EEEES-----CHHHHHTTCCTT------EEEEEECBCTTSCBCCHHHHHHHHH------------
T ss_pred hhHHHHHHhcCCe--EECCC-----CHHHHHHhcCCC------ceEEEEEecCCCCcCCHHHHHHHHH------------
Confidence 9999999754333 34443 688988888765 55666665544 3557788999999
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+++|.+|+..
T Consensus 159 --------ia~~~~~-------~~i~De~y~~~ 176 (366)
T d2aeua1 159 --------TAKNKEA-------IVFVDDASGAR 176 (366)
T ss_dssp --------HHHHHTC-------CEEEECTTHHH
T ss_pred --------HhccCcE-------EEEEecCcccc
Confidence 9999999 99999999754
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.51 E-value=9.1e-06 Score=87.57 Aligned_cols=147 Identities=10% Similarity=-0.009 Sum_probs=97.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|.......+|=..+.+|+.+-++.....- ..-+....++|+|+++++..++.+- + .+| -
T Consensus 68 Y~~~~G~~~LReaia~~~~~~~~~~~~~~--~~~~~~~I~it~G~~~al~~~~~~l----~------~~G---------d 126 (412)
T d1bw0a_ 68 YFPTVGSPEAREAVATWWRNSFVHKEELK--STIVKDNVVLCSGGSHGILMAITAI----C------DAG---------D 126 (412)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCSTTTG--GGCCGGGEEEESHHHHHHHHHHHHH----C------CTT---------C
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCcccccC--CCCCCCeEEEecccccchhhhhhhh----h------ccc---------c
Confidence 33333344565667788888765432100 0011236899999999987776541 1 123 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLG 377 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa 377 (943)
.|++.+-+.......+.+-+.+++.+|++ +++..+.++|++.+... +.+++.+...+-||.+-+ +.+|.
T Consensus 127 ~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~~~l~np~NPtG~~~~~~~~~~i~ 200 (412)
T d1bw0a_ 127 YALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK------TKLLIVTNPSNPCGSNFSRKHVEDIV 200 (412)
T ss_dssp EEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred ceeeeeccchhhhhhhhccCccccccccccccccchhhHHHHhhhhcc------ccccccccccccccccchhhhccccc
Confidence 34555555555566665544578888875 45678999988876554 567777888899998855 66667
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|++|++ |+..|.+|+..
T Consensus 201 ~--------------------~~~~~~~-------~vi~De~Y~~~ 219 (412)
T d1bw0a_ 201 R--------------------LAEELRL-------PLFSDEIYAGM 219 (412)
T ss_dssp H--------------------HHHHHTC-------CEEEECTTTTC
T ss_pred c--------------------ccccCCe-------eeechhhHHHh
Confidence 6 8999999 99999999876
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=2.5e-06 Score=93.99 Aligned_cols=310 Identities=10% Similarity=0.038 Sum_probs=182.2
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..-...++|..+++...++||.... -|=..+||.||+.++.+- + .||.+ =+.+
T Consensus 66 G~~~iD~iE~la~~ra~~lF~a~~a-----------nVqp~SGs~AN~av~~Al----l------~pGD~------Il~l 118 (416)
T d1dfoa_ 66 GCEYVDIVEQLAIDRAKELFGADYA-----------NVQPHSGSQANFAVYTAL----L------EPGDT------VLGM 118 (416)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEE-----------ECCCSSHHHHHHHHHHHH----C------CTTCE------EEEE
T ss_pred CChhHHHHHHHHHHHHHHHhCCCcc-----------eeecccCccHHHHHHHHh----c------CCCCe------eeec
Confidence 3446789999999999999998643 355688999998776642 1 24411 0122
Q ss_pred EecCCCchHHHHHH-HHCC-ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 305 YCSDQAHSSVEKAG-LIGL-VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 305 ~~S~~aHySv~KAa-~LG~-~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
=.+...|.+-...+ ..|. -+....++|.++.+|.+++++..+... |.+|++ |.+...-.-|++++.+
T Consensus 119 ~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~k-----PklIi~--G~S~y~r~~d~~~~re---- 187 (416)
T d1dfoa_ 119 NLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHK-----PKMIIG--GFSAYSGVVDWAKMRE---- 187 (416)
T ss_dssp CTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHC-----CSEEEE--ECSSCCSCCCHHHHHH----
T ss_pred cccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhc-----cceEEe--cccccccccCHHHHHH----
Confidence 24667777654333 2221 255666788899999999999888763 667764 4445555566888888
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+|++.|. ++++|+|+-++ .. . .|. +
T Consensus 188 ----------------iad~vga-------~l~~D~aH~~G-LI--a----------------------------~g~-~ 212 (416)
T d1dfoa_ 188 ----------------IADSIGA-------YLFVDMAHVAG-LV--A----------------------------AGV-Y 212 (416)
T ss_dssp ----------------HHHHTTC-------EEEEECTTTHH-HH--H----------------------------HTS-S
T ss_pred ----------------HHHhcCc-------eEEcchhhhhc-ce--e----------------------------ccc-c
Confidence 9999999 99999996443 11 0 000 1
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCccccc-CccccCCCCCcchH-HHHHHHHHH
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDY-MHWQIPLSKRFRAL-KLWFVIRNF 540 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~-~~~tie~SRrfrAL-klW~tLr~~ 540 (943)
-.+ +++||.+|.+.||.|.=+.+..+.. -.....+.. .+|. ...+++++-....+ .+-.+++..
T Consensus 213 ~sP-------~~~aDvvt~tThKtlrGPrggiI~~-~~~~~~~~~------~i~~avfPg~qggp~~~~iaa~Aval~Ea 278 (416)
T d1dfoa_ 213 PNP-------VPHAHVVTTTTHKTLAGPRGGLILA-KGGSEELYK------KLNSAVFPGGQGGPLMHVIAGKAVALKEA 278 (416)
T ss_dssp CCC-------TTTSSEEEEESSSTTCCCSCEEEEE-SSCCHHHHH------HHHHHHTTTTCSSCCHHHHHHHHHHHHHT
T ss_pred CCc-------ccccceeeeehhhcccCCCceEEEe-ccchHhHHH------HHHhhhCcccccCccHHHHHHHHHHHHHH
Confidence 112 3578999999999999333222100 000000000 0000 11233333322111 111123322
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCe
Q psy11047 541 GIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 620 (943)
Q Consensus 541 G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~ 620 (943)
-...|+++.++ -+..|+.|++.|.+. +|
T Consensus 279 ~~~~fk~Y~~q---------------------------------------------------vv~NA~~La~~L~~~-G~ 306 (416)
T d1dfoa_ 279 MEPEFKTYQQQ---------------------------------------------------VAKNAKAMVEVFLER-GY 306 (416)
T ss_dssp TSHHHHHHHHH---------------------------------------------------HHHHHHHHHHHHHHT-TC
T ss_pred cCHHHHHHHHH---------------------------------------------------HHHHHHHHHHHHHhC-Cc
Confidence 22344444444 245677777777665 89
Q ss_pred EEec-CCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccC-------CCcEEEE----eecCCCCHHHHHHHHHHH
Q psy11047 621 EIPA-ARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR-------IQGLGRA----QNFTRTTNDDITRDWNEI 688 (943)
Q Consensus 621 eIl~-~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~-------g~~~lR~----v~~~~tt~edId~ll~~I 688 (943)
+|+. -.+..+|.+.+.+.+.-.....+.|.+.|.. +....+. ...-||+ ++..-..++|+.++.+.|
T Consensus 307 ~iv~ggTdnHlvlvdl~~~~~~G~~a~~~Le~~gI~-~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I 385 (416)
T d1dfoa_ 307 KVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANIT-VNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWM 385 (416)
T ss_dssp EEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEE-CEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHH
T ss_pred ccccCCCCCceeEEEecccCCCHHHHHHHHHHcCeE-EeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHH
Confidence 9985 3456677777754332235566667777753 3222111 2357999 245667889999999988
Q ss_pred HHHHHH
Q psy11047 689 RNTATE 694 (943)
Q Consensus 689 ~~~~~~ 694 (943)
.++...
T Consensus 386 ~~~l~~ 391 (416)
T d1dfoa_ 386 CDVLDS 391 (416)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 887653
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.42 E-value=1.4e-05 Score=87.62 Aligned_cols=307 Identities=11% Similarity=0.093 Sum_probs=180.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|...-...++|..+++...+|||.... -+=..+||.||+....+- + .||- +.
T Consensus 61 y~G~~~id~iE~la~~ra~~lF~a~~a-----------nVqp~SGs~An~av~~al----l------~pGD-------~i 112 (405)
T d1kl1a_ 61 YGGCEYVDIVEELARERAKQLFGAEHA-----------NVQPHSGAQANMAVYFTV----L------EHGD-------TV 112 (405)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCSEE-----------ECCCSSHHHHHHHHHHHH----C------CTTC-------EE
T ss_pred cCCchhHHHHHHHHHHHHHHHhCCCcc-----------eeeccCchHHHHHHHHHh----c------CCCC-------EE
Confidence 344567899999999999999998643 355678999997665531 1 2441 11
Q ss_pred -EEEecCCCchHHHHHH-HHCC-ccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 -VAYCSDQAHSSVEKAG-LIGL-VNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 -vV~~S~~aHySv~KAa-~LG~-~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
.+=.+.-.|.|-.+.. ..|. -++...++| +++.+|.+++++.++..+ |.+|++ |.+..--.-|++++.+
T Consensus 113 m~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~k-----PklIi~--G~S~y~r~~d~~~~re 185 (405)
T d1kl1a_ 113 LGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHR-----PKLIVA--AASAYPRIIDFAKFRE 185 (405)
T ss_dssp EEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHHHHHH
T ss_pred EEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhC-----cceEEe--cccccccccChHHHHH
Confidence 1223567777754433 2221 255666777 678999999999998763 666664 4444444455888888
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhcc
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK 458 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~ 458 (943)
+|++.|. ++++|+|+=++ .. . .
T Consensus 186 --------------------Iad~vga-------~l~~D~aH~~G-LI--a----------------------------~ 207 (405)
T d1kl1a_ 186 --------------------IADEVGA-------YLMVDMAHIAG-LV--A----------------------------A 207 (405)
T ss_dssp --------------------HHHHHTC-------EEEEECTTTHH-HH--H----------------------------T
T ss_pred --------------------HHhhhCC-------EEecchhhHhh-hh--h----------------------------h
Confidence 9999999 99999995433 10 0 0
Q ss_pred CcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCccccc-CccccCCCCCcchH-HHHHH
Q psy11047 459 GRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDY-MHWQIPLSKRFRAL-KLWFV 536 (943)
Q Consensus 459 G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~-~~~tie~SRrfrAL-klW~t 536 (943)
|. +-.+ +++||.+|.+.||.|.=+.+..+. . +-+|... ++. ...+++++=....+ ++-.+
T Consensus 208 g~-~~~P-------~~~aDvvt~tThKtlrGPrgg~I~---~-~~~~~~~------i~~avfPg~qggp~~~~iAa~Ava 269 (405)
T d1kl1a_ 208 GL-HPNP-------VPYAHFVTTTTHKTLRGPRGGMIL---C-QEQFAKQ------IDKAIFPGIQGGPLMHVIAAKAVA 269 (405)
T ss_dssp TS-SCCS-------TTTCSEEEEESSSTTCCCSCEEEE---E-CHHHHHH------HHHHHTTTTCSSCCHHHHHHHHHH
T ss_pred hh-cCCh-------hhhhhheeccccccccCCCCceEE---e-cchhHHH------HHhhhCcccccCcchhHHHHHHHH
Confidence 00 1111 367999999999999933333220 0 0011100 000 01123333222111 11123
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhC
Q psy11047 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 616 (943)
Q Consensus 537 Lr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~ 616 (943)
++..-...++++.+++ +..|+.|++.|.+
T Consensus 270 l~Ea~~~~fk~Ya~qv---------------------------------------------------v~NAkaLa~~L~~ 298 (405)
T d1kl1a_ 270 FGEALQDDFKAYAKRV---------------------------------------------------VDNAKRLASALQN 298 (405)
T ss_dssp HHHHHSHHHHHHHHHH---------------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHH---------------------------------------------------HHHHHHHHHHHhc
Confidence 3333334455555552 4567777777765
Q ss_pred CCCeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccC-------CCcEEEE----eecCCCCHHHHHHH
Q psy11047 617 DPRFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR-------IQGLGRA----QNFTRTTNDDITRD 684 (943)
Q Consensus 617 ~p~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~-------g~~~lR~----v~~~~tt~edId~l 684 (943)
.++.|+.. .+..+|...+.+.+.-.....+.|.+.|. .+....+. ...-||+ ++.+-..++|+.++
T Consensus 299 -~G~~vv~ggTd~H~vlvdl~~~~~~g~~ae~~Le~agI-~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~i 376 (405)
T d1kl1a_ 299 -EGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGI-TVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEI 376 (405)
T ss_dssp -TTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTE-ECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred -CCceeecCCCccceeeccccccCCcHHHHHHHHHHcCe-EEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHH
Confidence 48999852 45667777775432113344445666675 34322221 1356999 34666789999999
Q ss_pred HHHHHHHHH
Q psy11047 685 WNEIRNTAT 693 (943)
Q Consensus 685 l~~I~~~~~ 693 (943)
.+.|.++..
T Consensus 377 a~~I~~~l~ 385 (405)
T d1kl1a_ 377 AAIIGLVLK 385 (405)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 998888764
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.39 E-value=2.7e-05 Score=83.85 Aligned_cols=158 Identities=8% Similarity=-0.121 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 206 SLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 206 silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
..+-+.+..+++.....|..+....++-+.+.+|+.+..|++... ...++|+|++++...++.+..
T Consensus 49 ~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~--------~~i~i~~G~~~~~~~~~~~~~------ 114 (395)
T d1xi9a_ 49 EHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITP--------DDVRVTAAVTEALQLIFGALL------ 114 (395)
T ss_dssp HHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG--------GGEEEESHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccc--------cccccccccchhhhhhhhhhc------
Confidence 344455555555433335444445677778889999998886431 357889999999866654311
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEec--CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIES--DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.+| + .|++.+-++......+.+-+..++.++. .+++.+|.+++++.+... +.+++.+-.
T Consensus 115 ----~~G--------d-~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~------~~~v~l~~P 175 (395)
T d1xi9a_ 115 ----DPG--------D-EILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDR------TKAIAVINP 175 (395)
T ss_dssp ----CTT--------C-EEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTT------EEEEEEESS
T ss_pred ----CCC--------C-EEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhccc------ccEEEecCC
Confidence 122 2 3455555666666666543346667764 346789999999887643 556677777
Q ss_pred CCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+-||.+-+ +.+|++ +|++||+ |+-.|.+|...
T Consensus 176 ~NPTG~~~s~~~~~~l~~--------------------~~~~~~~-------~ii~De~y~~~ 211 (395)
T d1xi9a_ 176 NNPTGALYDKKTLEEILN--------------------IAGEYEI-------PVISDEIYDLM 211 (395)
T ss_dssp CTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------CEEEECTTTTC
T ss_pred CCCccchhhHHHHHHHHh--------------------hhhhcCe-------eEEeccccccc
Confidence 899998866 556666 9999999 99999999765
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=98.39 E-value=3.9e-05 Score=84.13 Aligned_cols=129 Identities=9% Similarity=0.041 Sum_probs=96.6
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.....|....+|..+ +.|-|.. .++++++|..|+..++.+- + .+|
T Consensus 58 ~R~~nPT~~~LE~~l----a~LEgg~------------~a~~~sSGmaAi~~~l~~l----l------~~G--------- 102 (397)
T d1y4ia1 58 TRLGNPTTDALEKKL----AVLERGE------------AGLATASGISAITTTLLTL----C------QQG--------- 102 (397)
T ss_dssp CTTSCHHHHHHHHHH----HHHHTCS------------EEEEESSHHHHHHHHHHHH----C------CTT---------
T ss_pred eCCCCHHHHHHHHHH----HHHhCCc------------cceeehHHHHHHHHHHhhc----c------CCC---------
Confidence 344678889999754 6776653 4688999999887776542 1 122
Q ss_pred eEEEecCCCchHHHHHH--HH--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 302 LVAYCSDQAHSSVEKAG--LI--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa--~L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
-.|++++..+....+-+ .+ .+..+..+..+ |.++++++|+.+ +.+|.+=.-++.+.-+-||+.|+
T Consensus 103 d~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~-----d~~~~~~~i~~~------Tklv~~Esp~NP~l~v~Di~~i~ 171 (397)
T d1y4ia1 103 DHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAG-----KPEEIRAAMRPE------TKVVYIETPANPTLSLVDIETVA 171 (397)
T ss_dssp CEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHH
T ss_pred CeeeeecccccccchhhhcccCCCceEeeccCCC-----CHHHHHHhcCCC------CcEEEecCCcccceeecccHHHH
Confidence 35778888887776655 22 24477777653 589999998765 66787777888889999999999
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|+++|+ .+.||..|+..
T Consensus 172 ~--------------------iA~~~gi-------~~vvDnT~atP 190 (397)
T d1y4ia1 172 G--------------------IAHQQGA-------LLVVDNTFMSP 190 (397)
T ss_dssp H--------------------HHHHTTC-------EEEEECTTTCT
T ss_pred H--------------------HhhcCCc-------eEEecCcccCc
Confidence 9 9999999 99999999765
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=98.30 E-value=2.6e-05 Score=85.33 Aligned_cols=128 Identities=12% Similarity=0.020 Sum_probs=95.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
....|....||+. |++|-|.. .++++++|..|...++++.. .+| .
T Consensus 55 R~~nPT~~~LE~~----la~LEg~~------------~a~~~~SGmaAi~~~l~~l~----------~~G---------d 99 (392)
T d1gc0a_ 55 RISNPTLNLLEAR----MASLEGGE------------AGLALASGMGAITSTLWTLL----------RPG---------D 99 (392)
T ss_dssp --CCHHHHHHHHH----HHHHHTCS------------EEEEESSHHHHHHHHHHHHC----------CTT---------C
T ss_pred CCCChHHHHHHHH----HHHHhCCc------------ceeehhhHHHHHHHHHHhhc----------cCC---------C
Confidence 3466888889985 47777753 46888999888877766421 122 3
Q ss_pred EEEecCCCchHHHHHHH--HC--CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSSVEKAGL--IG--LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~--LG--~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
.|++++.......+-+. +. +..+..++.. |+++++++|+++ +.+|..-.-++.++-+-||+.|++
T Consensus 100 ~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~-----d~~~~~~ai~~~------t~lv~~Esp~NP~l~v~Di~~i~~ 168 (392)
T d1gc0a_ 100 EVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTPA------TRVIYFESPANPNMHMADIAGVAK 168 (392)
T ss_dssp EEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHH
T ss_pred eeecccccchhhhhhhhhhhccCCcccccCCcc-----CHHHHHHhCCCC------CeEEEecccccceeeecchHHHHH
Confidence 57777877777766552 21 3466776553 689999998865 678888888899999999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ .+.||..|+..
T Consensus 169 --------------------ia~~~g~-------~~vvDnT~atP 186 (392)
T d1gc0a_ 169 --------------------IARKHGA-------TVVVDNTYCTP 186 (392)
T ss_dssp --------------------HHGGGTC-------EEEEECTTTHH
T ss_pred --------------------HHHhcCC-------EEEEecCccCc
Confidence 9999999 99999999654
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=98.19 E-value=5.7e-05 Score=79.90 Aligned_cols=156 Identities=8% Similarity=-0.086 Sum_probs=98.8
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+-+.+..+++.....|.......++-..+.+|+.+..|.+.+. ...++|+||+++...++.+- .
T Consensus 46 i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~--------~~i~~t~G~~~al~~~~~~l----~---- 109 (375)
T d1o4sa_ 46 VVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISP--------DQVVVTNGAKQALFNAFMAL----L---- 109 (375)
T ss_dssp HHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCG--------GGEEEESHHHHHHHHHHHHH----C----
T ss_pred HHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhcccccccc--------ccccccCcHHHHHHHHHHHH----h----
Confidence 3344444444333334443445778888899999888876431 47899999999986665531 1
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
.+| +.++ +.+-+.+............+..++++ ..+.++.+.++...... +.+++.+-..+
T Consensus 110 --~~g--------d~vl-v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~nP~N 172 (375)
T d1o4sa_ 110 --DPG--------DEVI-VFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK------TKAVLINSPNN 172 (375)
T ss_dssp --CTT--------CEEE-EEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTT------EEEEEEESSCT
T ss_pred --CCC--------CEEE-EccCccccchhhhhccccccccccccccccccchhHHHHHhhccC------ccEEEEeCCCC
Confidence 122 2233 33334444444443333355555543 46677888777654443 55677777788
Q ss_pred ccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 366 AFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 366 ~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-||.+-+ +++|.+ +|++|++ |+-.|.+|+-.
T Consensus 173 PTG~~~s~~~~~~i~~--------------------~a~~~~~-------~ii~De~y~~~ 206 (375)
T d1o4sa_ 173 PTGVVYRREFLEGLVR--------------------LAKKRNF-------YIISDEVYDSL 206 (375)
T ss_dssp TTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEECTTTTS
T ss_pred CccCCCCHHHHHHHHH--------------------hHHHcCC-------ceehHhhhccc
Confidence 9998855 566666 8999999 99999988754
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=0.00028 Score=76.87 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=93.6
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.....|....+|+.+ |+|=|.+ ..+.+++|-.|...++.+. + .+ .
T Consensus 45 ~R~~nPt~~~le~~l----a~LEgg~------------~a~~~sSGMaAi~~~l~~l----~------~~---------g 89 (384)
T d1cs1a_ 45 SRRGNPTRDVVQRAL----AELEGGA------------GAVLTNTGMSAIHLVTTVF----L------KP---------G 89 (384)
T ss_dssp TTTCCHHHHHHHHHH----HHHHTCS------------EEEEESSHHHHHHHHHHHH----C------CT---------T
T ss_pred cCCCCHHHHHHHHHH----HHHhCCC------------ceEEecChHHHHHHHHhhc----c------cc---------c
Confidence 344678999999854 6776653 4688888988877666542 1 12 2
Q ss_pred eEEEecCCCchHHHHHH--HH--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 302 LVAYCSDQAHSSVEKAG--LI--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa--~L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
-.|++++.......+-. .+ ++..+..+.. .|.+++++++..+ +.+|.+=.-++.+.-+-||+.|+
T Consensus 90 d~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~-----~d~~~~~~~~~~~------t~~v~~EspsNP~l~v~Di~~i~ 158 (384)
T d1cs1a_ 90 DLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ-----GDEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKIC 158 (384)
T ss_dssp CEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT-----TCHHHHHHHHHTC------CSEEEEECSCTTTCCCCCHHHHH
T ss_pred ceecccccccchhhhhhhhhhcccccccccccC-----CCHHHHHhhcccc------ccEEEEeccccccceeccHHHHh
Confidence 35777887777765554 22 3445555544 3688899888876 55777777888888899999999
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|+++|+ .+-||..|+..
T Consensus 159 ~--------------------ia~~~g~-------~~vVDNT~atP 177 (384)
T d1cs1a_ 159 H--------------------LAREVGA-------VSVVDNTFLSP 177 (384)
T ss_dssp H--------------------HHHHTTC-------EEEEECTTTCT
T ss_pred h--------------------hhhhcCc-------EEEEeccccCc
Confidence 9 9999999 99999999765
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=98.17 E-value=0.00011 Score=77.88 Aligned_cols=132 Identities=11% Similarity=-0.031 Sum_probs=94.8
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.+|.+.++|+.+ ++.+|.. ..++|++||.|+.+||.+.. + .+.-.|
T Consensus 19 ~G~~~~~fE~~~----~~~~~~~------------~~~~~~SgT~Al~lal~~l~-------------~-----~~gdeV 64 (374)
T d1o69a_ 19 LGEFVNRFEQSV----KDYSKSE------------NALALNSATAALHLALRVAG-------------V-----KQDDIV 64 (374)
T ss_dssp TTHHHHHHHHHH----HHHHCCS------------EEEEESCHHHHHHHHHHHTT-------------C-----CTTCEE
T ss_pred CCHHHHHHHHHH----HHHHCcC------------eEEEeCCHHHHHHHHHHHcC-------------C-----CCcCEE
Confidence 489999999865 7788875 37999999999999987531 1 112247
Q ss_pred EecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 305 YCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 305 ~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
++|..++.+...+...-+...+.+.+|++..+......+.......+ +.+|+.+ ...|...++++|.+
T Consensus 65 i~p~~t~~a~~~~~~~~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~---~~aii~~---~~~G~~~d~~~i~~------ 132 (374)
T d1o69a_ 65 LASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKK---PKALILT---HLYGNAAKMDEIVE------ 132 (374)
T ss_dssp EEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSC---CCEEEEE---CGGGCCCCHHHHHH------
T ss_pred EeCCcchHhhHHHHhhccceeEecccccccccccccccccchhcccc---ccccccc---ccccchhhhHHHHH------
Confidence 88999999988888543347788888766555555544433333221 4455554 34677888999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ .+.-|+|++-+
T Consensus 133 --------------~~~~~~i-------~vIED~a~a~g 150 (374)
T d1o69a_ 133 --------------ICKENDI-------VLIEDAAEALG 150 (374)
T ss_dssp --------------HHHHTTC-------EEEEECTTCTT
T ss_pred --------------HhhccCc-------chhhhhhhhhc
Confidence 9999999 99999998765
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.14 E-value=4.1e-05 Score=85.13 Aligned_cols=314 Identities=13% Similarity=0.089 Sum_probs=166.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCccccccCcCCCCcE--EEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 228 ACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGG--VLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 228 aateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~G--vfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
...++|..+++...+|||++.. .|| |=..+||.||+.++.+ ++ .||-+ + +.+=
T Consensus 70 ~iD~iE~la~~ra~~lF~~~~a---------~w~vNVqp~SGs~An~av~~a----ll------~pgD~---I---m~l~ 124 (463)
T d2a7va1 70 VVDEIELLCQRRALEAFDLDPA---------QWGVNVQPYSGSPANLAVYTA----LL------QPHDR---I---MGLD 124 (463)
T ss_dssp -CTHHHHHHHHHHHHHTTCCTT---------TEEEECCCSSHHHHHHHHHHH----HC------CSCEE---C---CC--
T ss_pred hHHHHHHHHHHHHHHHhCCCch---------hccCCccccccHHHHHHHHHH----Hc------CCCce---E---Eeec
Confidence 4679999999999999999865 244 5567899999766553 11 24421 1 1122
Q ss_pred ecCCCchHHHHH---HH---HCC-ccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 306 CSDQAHSSVEKA---GL---IGL-VNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 306 ~S~~aHySv~KA---a~---LG~-~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
.+.-.|.|-..- .. .|. -......+| +++.+|.+++++..++.. |.+|++ |.+..--.-|++++.
T Consensus 125 l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~k-----PklIi~--G~S~y~r~~d~~~~r 197 (463)
T d2a7va1 125 LPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFR-----PRLIIA--GTSAYARLIDYARMR 197 (463)
T ss_dssp -----------------------------CCBCTTTCSBCHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHHHHH
T ss_pred cCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcC-----CceEEe--cccccccccCHHHHH
Confidence 355567665421 11 121 134444556 679999999999988763 777764 444544556688888
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhc
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNS 457 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~ 457 (943)
+ +|++.|. ++++|+|+=++ .. .
T Consensus 198 e--------------------Iad~vga-------~l~~D~aH~aG-LI--A---------------------------- 219 (463)
T d2a7va1 198 E--------------------VCDEVKA-------HLLADMAHISG-LV--A---------------------------- 219 (463)
T ss_dssp H--------------------HHHHTTC-------EEEEECGGGHH-HH--H----------------------------
T ss_pred H--------------------Hhhcccc-------eEEechhhhhH-Hh--h----------------------------
Confidence 8 9999999 99999995443 10 0
Q ss_pred cCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh-hh-c-ccCccccccC---CCCcccccC-ccccCCCCCcch
Q psy11047 458 KGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH-RT-F-NVEPLYLRHE---NSGLAIDYM-HWQIPLSKRFRA 530 (943)
Q Consensus 458 ~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~-~a-f-~~~p~YL~~~---~~g~~~d~~-~~tie~SRrfrA 530 (943)
.|. +-.+ +++||.+|.+.||.|.=+.+..+. +. . ...+ ..... .....+|.. ..+++++--...
T Consensus 220 ~g~-~~sP-------~~~aDvvt~tTHKTlrGPrgGiIl~~~~~~~~~~-~~~~~~~~~~~~~i~~avFPg~qggph~h~ 290 (463)
T d2a7va1 220 AKV-IPSP-------FKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDP-KTGREIPYTFEDRINFAVFPSLQGGPHNHA 290 (463)
T ss_dssp TTS-SCCG-------GGTCSEEEEESSGGGCSCSCEEEEEECSEEEEET-TTEEEEECCCHHHHHHHHTTTTCCSCCHHH
T ss_pred hhh-hcCh-------hhhhhhhhchhhhhhcCCCceEEEEccccccccc-ccCccchhHHHHHhhhhcCcccchhhhhhh
Confidence 011 1122 257899999999999933333220 00 0 0000 00000 000001111 123344432211
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHH
Q psy11047 531 -LKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQK 609 (943)
Q Consensus 531 -LklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~ 609 (943)
.++-.+++..-...|+++.+++ +..|+.
T Consensus 291 iAa~Ava~~ea~~~~fk~Ya~qV---------------------------------------------------v~NAk~ 319 (463)
T d2a7va1 291 IAAVAVALKQACTPMFREYSLQV---------------------------------------------------LKNARA 319 (463)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHH---------------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHH---------------------------------------------------HHHHHH
Confidence 1122233333334455555552 456677
Q ss_pred HHHHHhCCCCeEEec-CCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccC------CCcEEEE-e---ecCCCCH
Q psy11047 610 FEALVLGDPRFEIPA-ARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR------IQGLGRA-Q---NFTRTTN 678 (943)
Q Consensus 610 l~~~L~~~p~~eIl~-~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~------g~~~lR~-v---~~~~tt~ 678 (943)
|++.|.+. +++|+. -.+..+|.+.+.+.+.-.....+.|.+.|. .+....+. .+.-||+ + +..-..+
T Consensus 320 La~~L~~~-G~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI-~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e 397 (463)
T d2a7va1 320 MADALLER-GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSI-TANKNTCPGDRSAITPGGLRLGAPALTSRQFRE 397 (463)
T ss_dssp HHHHHHHT-TCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTE-ECEEECCTTCCCSSSCSEEEEESHHHHHTTCCH
T ss_pred HHHHHHhC-CCeeecCCCCCceeeeeccccCCCHHHHHHHHHhccC-ccCCccCCCCCCCCCCCceEeCCHHHHhCCCCH
Confidence 77666654 899985 345566666765433223455556666674 33322211 1346999 2 4556788
Q ss_pred HHHHHHHHHHHHHHH
Q psy11047 679 DDITRDWNEIRNTAT 693 (943)
Q Consensus 679 edId~ll~~I~~~~~ 693 (943)
+|+.++.+.|.++..
T Consensus 398 ~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 398 DDFRRVVDFIDEGVN 412 (463)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988888755
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.96 E-value=0.00021 Score=79.49 Aligned_cols=323 Identities=13% Similarity=0.067 Sum_probs=177.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|...-...++|..+.+...++||++.... ..-|=..+||.||+.++++- + .||-+ -+
T Consensus 69 y~G~~~iD~iE~la~~ra~~lF~~~~~~~-------~anVqp~SGs~An~av~~al----l------~pgD~------im 125 (470)
T d1rv3a_ 69 YGGTEHIDELETLCQKRALQAYGLDPQCW-------GVNVQPYSGSPANFAVYTAL----V------EPHGR------IM 125 (470)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCTTTE-------EEECCCSSHHHHHHHHHHHH----T------CTTCE------EE
T ss_pred cCCchhHHHHHHHHHHHHHHHhCCChhhc-------cccccccCCccHHHHHHHHh----c------CCCCe------Ee
Confidence 33455789999999999999999975410 11255678999998776641 1 23310 01
Q ss_pred EEEecCCCchHHHHHH------HHC-CccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHH
Q psy11047 303 VAYCSDQAHSSVEKAG------LIG-LVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYC 374 (943)
Q Consensus 303 vV~~S~~aHySv~KAa------~LG-~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~ 374 (943)
.+=.+.-.|.|-.... ..| .-+....++| +++.+|.+++++..+... |.+|++ |.+..--.-|++
T Consensus 126 ~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~k-----PklIi~--G~S~y~r~~d~~ 198 (470)
T d1rv3a_ 126 GLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFH-----PKLIIA--GTSCYSRNLDYG 198 (470)
T ss_dssp EECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHH
T ss_pred eeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhC-----cceEee--chhhccccCCHH
Confidence 1223556776643110 111 1255667777 459999999999888753 666664 445544556688
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHH
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKR 454 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~ 454 (943)
++.+ +|++.|. ++++|+|+=++ .. .
T Consensus 199 ~~re--------------------Iad~vga-------~l~~D~aH~aG-LI--A------------------------- 223 (470)
T d1rv3a_ 199 RLRK--------------------IADENGA-------YLMADMAHISG-LV--V------------------------- 223 (470)
T ss_dssp HHHH--------------------HHHHTTC-------EEEEECTTTHH-HH--H-------------------------
T ss_pred HHHH--------------------HHhccCC-------eEEecchhhhh-hc--c-------------------------
Confidence 8888 9999999 99999995443 10 0
Q ss_pred hhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh-h-hc-ccCccccccCC-CC--cccccC-ccccCCCCC
Q psy11047 455 LNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH-R-TF-NVEPLYLRHEN-SG--LAIDYM-HWQIPLSKR 527 (943)
Q Consensus 455 l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~-~-af-~~~p~YL~~~~-~g--~~~d~~-~~tie~SRr 527 (943)
.|. +-.+ +++||.+|.+.||.|.=+.+..+. + .+ ...+. ....- .. ..+|.. -.+++++=.
T Consensus 224 ---~g~-~~sP-------l~~aDvvt~tTHKtlrGPrgGiI~~~~~~~~~~~~-~~~~~~~~~~~~i~~avFPg~qggph 291 (470)
T d1rv3a_ 224 ---AGV-VPSP-------FEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPK-TGKEILYNLESLINSAVFPGLQGGPH 291 (470)
T ss_dssp ---HTS-SCCG-------GGTCSEEEEESSGGGCCCSCEEEEEECSBCC--------CCBCCHHHHHHHHHTTTTCCSCC
T ss_pred ---ccc-cCCh-------hheeeeeeeehhhhccCCcceEEEEcccccccccc-ccchhHHHHHHHHhhhcCccccccch
Confidence 011 1112 257899999999999833333220 0 00 00000 00000 00 001111 112333322
Q ss_pred cchH-HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHH
Q psy11047 528 FRAL-KLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRL 606 (943)
Q Consensus 528 frAL-klW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~L 606 (943)
...+ ++-.+++..-..-|+++.++ -+..
T Consensus 292 ~~~IAa~Ava~~ea~~~~fk~Ya~q---------------------------------------------------vv~N 320 (470)
T d1rv3a_ 292 NHAIAGVAVALKQAMTPEFKEYQRQ---------------------------------------------------VVAN 320 (470)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHH---------------------------------------------------HHHH
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHH---------------------------------------------------HHHH
Confidence 2111 11122332222234444444 3456
Q ss_pred HHHHHHHHhCCCCeEEec-CCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccC------CCcEEEE----eecCC
Q psy11047 607 AQKFEALVLGDPRFEIPA-ARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR------IQGLGRA----QNFTR 675 (943)
Q Consensus 607 A~~l~~~L~~~p~~eIl~-~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~------g~~~lR~----v~~~~ 675 (943)
|+.|++.|.+. ++.|+. -.+..+|...+.+...-.....+.|.+.|. .+....+. ...-+|+ ++.+-
T Consensus 321 Ak~La~~L~~~-G~~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI-~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG 398 (470)
T d1rv3a_ 321 CRALSAALVEL-GYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSI-ACNKNTCPGDKSALRPSGLRLGTPALTSRG 398 (470)
T ss_dssp HHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTE-ECEEECCSSCSCTTSCCEEEEECHHHHHTT
T ss_pred HHHHHHHHHhC-CceeccCCCCCceEEEeecccCCcHHHHHHHHHHcCc-EECCCcCCCCCCCCCCCeeEecCHHHHhCC
Confidence 77777777664 889874 234455555554321112344455666664 33221111 1346999 35777
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q psy11047 676 TTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 676 tt~edId~ll~~I~~~~~~l 695 (943)
.+++|+.++.+.|.++.+..
T Consensus 399 ~~e~dm~~iA~~I~~~l~~~ 418 (470)
T d1rv3a_ 399 LLEKDFQKVAHFIHRGIELT 418 (470)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 88999999999998877543
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=97.92 E-value=0.00056 Score=73.53 Aligned_cols=159 Identities=8% Similarity=-0.061 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhccC---ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINCLG---FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEA 282 (943)
Q Consensus 206 silgd~L~~alN~n~---~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~ 282 (943)
..+-+.+..+++... ..|.......++=+.+.+|+.+..|.+-.. ....++|+|+++|...++.+-.
T Consensus 42 ~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p-------~~~I~it~G~~~al~~~~~~l~--- 111 (418)
T d2r5ea1 42 KYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINP-------MTEVLVTVGAYEALYATIQGHV--- 111 (418)
T ss_dssp HHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCT-------TTSEEEESHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCc-------cceEEEcCCCchhhhhhhhhcc---
Confidence 444555655554322 124333345566667889999999886320 1368999999999877765421
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCC----------CCcCHHHHHHHHHHhhccC
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK----------LSLRGDKLIEAIERDKKKH 352 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~----------grmD~daLe~aI~~d~~kG 352 (943)
.+| ..|++.+-++......+..-+..++.|+++.+ ..++.+++.+.....
T Consensus 112 -------~~g---------d~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 171 (418)
T d2r5ea1 112 -------DEG---------DEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK---- 171 (418)
T ss_dssp -------CTT---------CEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTT----
T ss_pred -------ccc---------cceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhcc----
Confidence 122 23556666777777777654557777876533 356777776655433
Q ss_pred CCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 353 LIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 353 ~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+++.+-..+-+|.+-+ +++|.+ +|++|++ ++..|.+|...
T Consensus 172 --~~~~~i~~p~NPtG~~~s~e~~~~l~~--------------------~a~~~~~-------~iI~De~y~~~ 216 (418)
T d2r5ea1 172 --TKMIIINTPHNPLGKVMDRAELEVVAN--------------------LCKKWNV-------LCVSDEVYEHM 216 (418)
T ss_dssp --EEEEEEESSCTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEECTTTTC
T ss_pred --ccceecCCcCccccccccHHHHHHHhh--------------------hhhcCCe-------eeecccchhhh
Confidence 567777888999998866 556666 8999999 99999999765
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=97.90 E-value=0.00027 Score=74.98 Aligned_cols=141 Identities=10% Similarity=-0.054 Sum_probs=89.1
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.|.......+|=..+.+|+.+..|++-.. ...++|+|++++...++.+- . .+| +
T Consensus 59 ~Y~~~~G~~~LR~aia~~~~~~~g~~~~~--------~~I~it~G~~~~l~~~~~~l-----~-----~~g--------d 112 (389)
T d2gb3a1 59 YYSHSAGIWELREAFASYYKRRQRVDVKP--------ENVLVTNGGSEAILFSFAVI-----A-----NPG--------D 112 (389)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHTSCCCCCG--------GGEEEESHHHHHHHHHHHHH-----C-----CTT--------C
T ss_pred CCCCCcCCHHHHHHHHHHHHHhcCCCccc--------ceEEeccccccccccccccc-----c-----cCC--------C
Confidence 34433345566667888888887775321 36899999999876665431 1 122 2
Q ss_pred eEEEecCCCchHHHHHHH-HCCccEEEEecCCCCCc-CHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHh
Q psy11047 302 LVAYCSDQAHSSVEKAGL-IGLVNMRYIESDDKLSL-RGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCL 376 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~D~~grm-D~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eI 376 (943)
.|++.+-..+.....+. .|. .++.++.+.++.. +.+.+...+.. .+.+++.+-.++-+|.+-+ +++|
T Consensus 113 -~V~i~~P~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~nP~NPtG~~~s~~~~~~i 184 (389)
T d2gb3a1 113 -EILVLEPFYANYNAFAKIAGV-KLIPVTRRMEEGFAIPQNLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYL 184 (389)
T ss_dssp -EEEEEESCCTHHHHHHHHHTC-EEEEEECCGGGTSCCCTTGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred -eEEEeCCCCccccccccccCc-cccccccccccccchhhhhhhhccc------CccEEEeCCCCccccccchHHHHHHH
Confidence 24444445555555554 454 6677777654433 33333332222 2556667778888998755 6777
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+ +|++|++ ++-.|.+|+..
T Consensus 185 ~~--------------------~a~~~~~-------~iI~De~y~~~ 204 (389)
T d2gb3a1 185 VE--------------------IAERHGL-------FLIVDEVYSEI 204 (389)
T ss_dssp HH--------------------HHHHTTC-------EEEEECTTTTC
T ss_pred Hh--------------------hcccCCE-------EEEEecccccc
Confidence 77 9999999 99999999765
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.89 E-value=0.00052 Score=74.51 Aligned_cols=128 Identities=9% Similarity=0.040 Sum_probs=91.2
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.....|....+|+.+ |.|=|.+ ..+.+++|-.|+ .+++.. + .+ .
T Consensus 44 ~R~~nPt~~~le~~l----a~LE~~~------------~a~~fsSGMaAi-sall~l----l------~~---------G 87 (380)
T d1ibja_ 44 TRSGNPTRDALESLL----AKLDKAD------------RAFCFTSGMAAL-SAVTHL----I------KN---------G 87 (380)
T ss_dssp TTTCCHHHHHHHHHH----HHHHTCS------------EEEEESSHHHHH-HHHHTT----S------CT---------T
T ss_pred eCCCChHHHHHHHHH----HHHcCCc------------eEEehhhHHHHH-HHHHHh----h------CC---------C
Confidence 344678888999854 6776653 467888886664 555421 1 12 2
Q ss_pred eEEEecCCCchHHHHHHH--H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 302 LVAYCSDQAHSSVEKAGL--I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa~--L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
-.|+++...+....+-+. + .+..+..+..+ +.++++++|..+ +.+|.+-.-++.+.-+-||+.|+
T Consensus 88 d~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~-----~~~~~~~ai~~~------t~li~~EtpsNP~l~v~Di~~i~ 156 (380)
T d1ibja_ 88 EEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-----KLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKIS 156 (380)
T ss_dssp CEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-----SHHHHHHHCCSS------EEEEEECSSCTTTCCCCCHHHHH
T ss_pred CEEEEEecccccccchhhhhhccccccccccCcc-----hHHHHHHHhccC------ccEEEeccccccccccccHHHHH
Confidence 357778888877776652 2 23355555543 578888887654 67888878888899999999999
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|+++|+ ++-||..|+..
T Consensus 157 ~--------------------iA~~~g~-------~~vVDnT~atP 175 (380)
T d1ibja_ 157 E--------------------MAHAQGA-------LVLVDNSIMSP 175 (380)
T ss_dssp H--------------------HHHTTTC-------EEEEECTTTCT
T ss_pred H--------------------HHHHcCC-------eEEeecccccc
Confidence 9 9999999 99999999775
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=97.83 E-value=0.0015 Score=71.31 Aligned_cols=128 Identities=11% Similarity=0.014 Sum_probs=88.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
....|....||+.+ |+|-|.. ..+++++|..|+..++.+- . .+ .-
T Consensus 63 R~~nPt~~~LE~~l----a~LEgg~------------~a~~~sSGMaAi~~~l~~l----~------~~---------Gd 107 (398)
T d1qgna_ 63 RYGNPTTVVLEEKI----SALEGAE------------STLLMASGMCASTVMLLAL----V------PA---------GG 107 (398)
T ss_dssp GGCCHHHHHHHHHH----HHHHTCS------------EEEEESCHHHHHHHHHHHH----S------CS---------SC
T ss_pred CCCChHHHHHHHHH----HHHhCCc------------eEEEecCcchHHHHHHhhc----c------cc---------cc
Confidence 34679999999865 6776653 4688999988887776541 1 12 23
Q ss_pred EEEecCCCchHHHHHHH--H--CCccEEEEecCCCCCcCHHHHHHHH-HHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 303 VAYCSDQAHSSVEKAGL--I--GLVNMRYIESDDKLSLRGDKLIEAI-ERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~--L--G~~~v~~Vp~D~~grmD~daLe~aI-~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
.|+++...+.....-+. + .+..+..+... +.++.++.+ .++ +.+|.+=..++.+.-+-||+.|+
T Consensus 108 ~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~-----~~~~~~~~~~~~~------t~~v~~EspsNP~l~v~Di~~ia 176 (398)
T d1qgna_ 108 HIVTTTDCYRKTRIFIETILPKMGITATVIDPA-----DVGALELALNQKK------VNLFFTESPTNPFLRCVDIELVS 176 (398)
T ss_dssp EEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS-----CHHHHHHHHHHSC------EEEEEEESSCTTTCCCCCHHHHH
T ss_pred cccccccccchhhhhhccccccccccccccccc-----chhhhhhhhcccc------ceEEEccCccccccccchHHHHH
Confidence 57777877776665542 2 23355555432 344444433 333 56777778888888898999999
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|+++|+ .+.||..|+..
T Consensus 177 ~--------------------ia~~~g~-------~~vVDnT~atP 195 (398)
T d1qgna_ 177 K--------------------LCHEKGA-------LVCIDGTFATP 195 (398)
T ss_dssp H--------------------HHHHTTC-------EEEEECTTTCT
T ss_pred H--------------------HHhhcCC-------EEEecceeecc
Confidence 9 9999999 99999999765
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=0.00097 Score=70.76 Aligned_cols=158 Identities=10% Similarity=0.003 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 206 SLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 206 silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
..+-+.+..+++.....|.......+|=..+.+|+.+..|.+.. .....++|+|++++...++.+-.
T Consensus 42 ~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~-------~~~~I~vt~G~~~al~~~~~~l~------ 108 (382)
T d1u08a_ 42 RYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPD-------ADSDITVTAGATEALYAAITALV------ 108 (382)
T ss_dssp HHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCC-------TTTTEEEESSHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCC-------CCceEEeccchHHHHHHHHhhcc------
Confidence 44556666666655445655555667777888999999887632 11358999999999987776421
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.+| + .|++.+-..+....+.. .|. .+..++.+ ..+.+|.+++++.+... +.+++.+-.
T Consensus 109 ----~~g--------d-~vl~~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~P 168 (382)
T d1u08a_ 109 ----RNG--------D-EVICFDPSYDSYAPAIALSGG-IVKRMALQPPHFRVDWQEFAALLSER------TRLVILNTP 168 (382)
T ss_dssp ----CTT--------C-EEEEEESCCTTHHHHHHHTTC-EEEEEECCTTTCCCCHHHHHHHCCTT------EEEEEEESS
T ss_pred ----ccc--------c-eEEEecccccchhhhhhhccc-cceecccccccccCCHHHHhhhhccC------ccEEEECCC
Confidence 122 2 34555555555555553 454 45556554 46678999998876654 567777888
Q ss_pred CCcccccccH---HHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDSY---CCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDpL---~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++-+|++-+. ++|.+ +|+++++ ++..|..|.-.
T Consensus 169 ~NPtG~v~~~~~~~~l~~--------------------~~~~~~~-------~ii~d~~~~~~ 204 (382)
T d1u08a_ 169 HNPSATVWQQADFAALWQ--------------------AIAGHEI-------FVISDEVYEHI 204 (382)
T ss_dssp CTTTCCCCCHHHHHHHHH--------------------HHTTSCC-------EEEEECTTTTC
T ss_pred Ccccccccccccchhhhh--------------------hhccccc-------eeeeecchhhc
Confidence 8999998764 45555 7888998 88888887654
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.00062 Score=73.28 Aligned_cols=159 Identities=8% Similarity=-0.012 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhcc--CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINCL--GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEA 282 (943)
Q Consensus 205 ~silgd~L~~alN~n--~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~ 282 (943)
|..+-+.+..++... ...|.......++-..+.+|+.+.+|++-.. ....++|+|+++|...++.+..
T Consensus 40 p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~-------~~~I~it~G~~~al~~~~~~l~--- 109 (418)
T d1w7la_ 40 PDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDP-------LRNVLVTVGGYGALFTAFQALV--- 109 (418)
T ss_dssp CHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCH-------HHHEEEESHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCc-------ccceeeccCcHHHHHHHHHhhc---
Confidence 345556666665422 1234444456677778889999988986320 0258999999999877665421
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEEecC------------CCCCcCHHHHHHHHHHhh
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYIESD------------DKLSLRGDKLIEAIERDK 349 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~D------------~~grmD~daLe~aI~~d~ 349 (943)
.+| . .|++.+-........+. .|. +++.++.+ .++.+|.+++.......
T Consensus 110 -------~~g--------~-~vlv~~p~~~~y~~~~~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~- 171 (418)
T d1w7la_ 110 -------DEG--------D-EVIIIEPFFDCYEPMTMMAGG-RPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR- 171 (418)
T ss_dssp -------CTT--------C-EEEEEESCCTTHHHHHHHTTC-EEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTT-
T ss_pred -------cCC--------c-eeeccccccchhHHHHHHcCC-EeeccccccccccccccccccCcccchhhhhcccccc-
Confidence 122 2 23333333333344443 444 44444432 34567777776655443
Q ss_pred ccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 350 KKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 350 ~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+++.+...+-+|.+-+ +++|.+ +|++|++ |+-.|.+|...
T Consensus 172 -----~~~i~~~~p~NPtG~~~s~~~~~~i~~--------------------~a~~~~v-------~vI~De~Y~~l 216 (418)
T d1w7la_ 172 -----TKALVLNTPNNPLGKVFSREELELVAS--------------------LCQQHDV-------VCITDEVYQWM 216 (418)
T ss_dssp -----EEEEEEESSCTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEECTTTTC
T ss_pred -----ccceeccCcCCcccccccHHHHHHHHH--------------------HHHhcCC-------CchhhhhhHHh
Confidence 567788888899998854 667777 9999999 99999999775
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=97.72 E-value=0.0041 Score=67.57 Aligned_cols=294 Identities=11% Similarity=0.038 Sum_probs=174.3
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.....|....+|+.+ ++|=|.+ ..+.+++|..|...++++- + . +.
T Consensus 54 sR~~nPT~~~le~~l----a~LEg~~------------~a~~~sSGmaAi~~~~l~l----~------~---------~g 98 (394)
T d1e5ea_ 54 TRLGNPTVSNLEGKI----AFLEKTE------------ACVATSSGMGAIAATVLTI----L------K---------AG 98 (394)
T ss_dssp TTTCCHHHHHHHHHH----HHHHTCS------------EEEEESSHHHHHHHHHHHH----C------C---------TT
T ss_pred cCCCCHHHHHHHHHH----HHHhCCc------------ceeeeccchHHHHHHHHhh----c------c---------cc
Confidence 344678899999854 6777654 4678888988887666542 1 1 22
Q ss_pred eEEEecCCCchHHHHHHH--H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 302 LVAYCSDQAHSSVEKAGL--I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa~--L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
-+|++++..+....+-.. + .+..+..+..+ |.++++++|+++ +.+|..-.-++.+.-+-|+..+.
T Consensus 99 d~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~-----d~~~~~~~i~~~------t~lv~~Etp~NP~l~v~Di~~~~ 167 (394)
T d1e5ea_ 99 DHLISDECLYGCTHALFEHALTKFGIQVDFINTA-----IPGEVKKHMKPN------TKIVYFETPANPTLKIIDMERVC 167 (394)
T ss_dssp CEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----STTHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHH
T ss_pred cccccccceeehhhHhHHHHhhccceeeeccCCC-----CHHHHHHhhccc------ccEEEEeccCCcceeeehhhhhh
Confidence 357778887777665542 2 34577777654 466788888765 56777777788888888899888
Q ss_pred hhccccccccccccccCchHHHHH-HcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhh
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFIL-SYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLN 456 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar-~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~ 456 (943)
+ .++ ++|+ .+-||-.|+.. .+
T Consensus 168 ~--------------------~~~~~~g~-------~vvvDnT~atP-~~------------------------------ 189 (394)
T d1e5ea_ 168 K--------------------DAHSQEGV-------LVIADNTFCSP-MI------------------------------ 189 (394)
T ss_dssp H--------------------HHHTSTTC-------EEEEECTTTCT-TT------------------------------
T ss_pred h--------------------ccccccCe-------EEEecCcccCc-cc------------------------------
Confidence 7 555 5688 88999999765 32
Q ss_pred ccCcccccchhhhhcCCCCeeEEEEcCCCccC-ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHH
Q psy11047 457 SKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR-VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWF 535 (943)
Q Consensus 457 ~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~ 535 (943)
+.+.. -.||-+.-+.-|+++ -.| .+.........++... ....+.-..+-...+...|+
T Consensus 190 ------~~Pl~------~GaDiVvhS~TKy~~GhsD--v~~G~v~~~~~~~~~~------~~~~~~~~~G~~lsp~~a~l 249 (394)
T d1e5ea_ 190 ------TNPVD------FGVDVVVHSATKYINGHTD--VVAGLICGKADLLQQI------RMVGIKDITGSVISPHDAWL 249 (394)
T ss_dssp ------CCGGG------GTCSEEEEETTTTTTCSSC--CCCEEEEECHHHHHHH------HHTCCCCCCCCCCCHHHHHH
T ss_pred ------CCchh------cCCCEEEechhhhcCCCcc--cccccccchhhHHHHH------HHHHHHHhhCCCCChHHHHH
Confidence 22222 157999999999887 100 0000000000000000 00000000111234566786
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHh
Q psy11047 536 VIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 615 (943)
Q Consensus 536 tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~ 615 (943)
.++ |.+-|.-++++ +.+.|..++++|+
T Consensus 250 l~r--gl~TL~lRm~r---------------------------------------------------~~~nA~~lA~~L~ 276 (394)
T d1e5ea_ 250 ITR--GLSTLNIRMKA---------------------------------------------------ESENAMKVAEYLK 276 (394)
T ss_dssp HHH--HHTTHHHHHHH---------------------------------------------------HHHHHHHHHHHHH
T ss_pred HHh--hchhHHHHHHH---------------------------------------------------HHHHHHHHHHHHh
Confidence 666 44555555555 5677888888899
Q ss_pred CCCCeEEec-C----------------CCccEEEEEecCCChHHHHHHHHHh--ccC-------cEEEeecc--cC----
Q psy11047 616 GDPRFEIPA-A----------------RHLGMVVIRLLGENILTEKLLKRLN--SKG-------RLHCVPAS--LR---- 663 (943)
Q Consensus 616 ~~p~~eIl~-~----------------~~l~iV~Fr~~g~n~l~~~Ll~~L~--~~G-------~~~~s~t~--~~---- 663 (943)
+.|.++-+. | ...++++|.+.+..+...+++++|. ..+ -+.+.|.. +.
T Consensus 277 ~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~ 356 (394)
T d1e5ea_ 277 SHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPK 356 (394)
T ss_dssp TCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCH
T ss_pred hcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHHHHhCCccceeeccCCccceeECccccccccCCH
Confidence 999876432 2 1378899998764333456666554 111 12332221 10
Q ss_pred --------CCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 664 --------IQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 664 --------g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
.++.+|++++.. |++.+++.+++..+.++
T Consensus 357 ~~r~~~Gi~~~liRlSVGlE----d~eDLi~Dl~qAl~~l~ 393 (394)
T d1e5ea_ 357 EEREAAGITDGMIRLSVGIE----DADELIADFKQGLDALL 393 (394)
T ss_dssp HHHHHTTCCTTEEEEECCSS----CHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcCEEEEEeccC----CHHHHHHHHHHHHHHhh
Confidence 146899988864 56666666666655443
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=97.58 E-value=0.0013 Score=70.10 Aligned_cols=106 Identities=6% Similarity=-0.081 Sum_probs=75.8
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH-----HHCCccEEEEecCCCC
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG-----LIGLVNMRYIESDDKL 334 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa-----~LG~~~v~~Vp~D~~g 334 (943)
+++.+++|..|+..++++. + .+| -.|+++...+....+-. .+| .++..++.+
T Consensus 15 ~a~~~sSGMaAi~~~l~~l----l------~~G---------d~iv~~~~~Yg~t~~~~~~~l~~~g-i~~~~~d~~--- 71 (331)
T d1pffa_ 15 ACAATASGMGAIAASVWTF----L------KAG---------DHLISDDCLYGCTHALFEHQLRKFG-VEVDFIDMA--- 71 (331)
T ss_dssp EEEEESSHHHHHHHHHHHH----C------CTT---------CEEEEESCCCHHHHHHHHTHHHHTT-CEEEEECTT---
T ss_pred eEEEECCHHHHHHHHHHHH----h------CCC---------CEEEEeCCCchHHHHHHHHHHHhcC-eEEEEeccc---
Confidence 4688899998887776542 1 122 24677777776655443 234 477777654
Q ss_pred CcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHH-HHHcCCCCCccchh
Q psy11047 335 SLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNF-ILSYFPKFQSVRLA 413 (943)
Q Consensus 335 rmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~i-ar~~Gl~~~~l~lw 413 (943)
|.+.++++++++ +.+|..-.-++.+..+.|+..+.+ + ++++|+ .
T Consensus 72 --d~~~~~~~i~~~------t~~i~~Es~~np~~~v~d~~~~~~--------------------~~a~~~~~-------~ 116 (331)
T d1pffa_ 72 --VPGNIEKHLKPN------TRIVYFETPANPTLKVIDIEDAVK--------------------QARKQKDI-------L 116 (331)
T ss_dssp --STTHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHH--------------------HHTTSSSC-------E
T ss_pred --chhhHhhhcccc------cceeeeecccccccccccchhhhh--------------------hhhcccCc-------e
Confidence 577888887665 677888788888889999998888 6 467899 8
Q ss_pred hhHHhhhcCC
Q psy11047 414 QKFEALVLGD 423 (943)
Q Consensus 414 LHVDAA~GG~ 423 (943)
+-||-.|+..
T Consensus 117 ~vVDnT~atp 126 (331)
T d1pffa_ 117 VIVDNTFASP 126 (331)
T ss_dssp EEEECTTTHH
T ss_pred EEeecccccc
Confidence 9999999765
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.0073 Score=65.25 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=41.9
Q ss_pred EEEEEecCC-ChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 630 MVVIRLLGE-NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 630 iV~Fr~~g~-n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
+..|.+... +.....+.+++.++|.+.. +. +..++|+.....+|++||+++++.|++...
T Consensus 342 ~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~-~~---~~~~i~l~PpL~it~~~id~~~~~l~~al~ 402 (404)
T d2byla1 342 LNAIVIKETKDWDAWKVCLRLRDNGLLAK-PT---HGDIIRFAPPLVIKEDELRESIEIINKTIL 402 (404)
T ss_dssp EEEEEECCCSSCCHHHHHHHHHHTTEECE-EE---ETTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCchhHHHHHHHHHhCCeEEe-cC---CCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence 445555432 2335678888999996533 21 235799987777899999999999988754
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=97.50 E-value=0.0086 Score=64.30 Aligned_cols=81 Identities=16% Similarity=0.070 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCCCeEEecCCCc-cEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHH
Q psy11047 605 RLAQKFEALVLGDPRFEIPAARHL-GMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 605 ~LA~~l~~~L~~~p~~eIl~~~~l-~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ 683 (943)
++.++|.+.|++...=.+..-+.. .+..|-+... ....+.+.+...|.+.+. .+..++|+.....+|++||++
T Consensus 304 ~~g~~l~~~L~~l~~~~v~~vrg~Gl~~~ie~~~~--~~~~~~~~~~~~g~l~~~----~g~~~ir~~Ppl~it~~~ld~ 377 (387)
T d1vefa1 304 ELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEK--AAPYIARLEKEHRVLALQ----AGPTVIRFLPPLVIEKEDLER 377 (387)
T ss_dssp HHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESSC--SHHHHHHHHHHHCEECEE----SSTTEEEECCCTTCCHHHHHH
T ss_pred hhhHHHHHHHHhcCCCceEEEeecceEEEEEEeCC--chHHHHHHHHHCCCeEEe----cCCCEEEEECCccCCHHHHHH
Confidence 455666666665422001111111 2344555432 245555666667754332 245689998778899999999
Q ss_pred HHHHHHHH
Q psy11047 684 DWNEIRNT 691 (943)
Q Consensus 684 ll~~I~~~ 691 (943)
+++.|+++
T Consensus 378 ~~~~i~~a 385 (387)
T d1vefa1 378 VVEAVRAV 385 (387)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.50 E-value=0.004 Score=67.69 Aligned_cols=128 Identities=12% Similarity=0.078 Sum_probs=83.0
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 221 FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 221 ~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
......|....+|+.+ +.|-|.. .++.+++|..|+ .+++.. + .+|
T Consensus 49 YsR~gnPT~~~lE~~l----a~LE~~~------------~a~~~sSGmaAi-~~~l~~----l------~~g-------- 93 (393)
T d1n8pa_ 49 YSRSQNPNRENLERAV----AALENAQ------------YGLAFSSGSATT-ATILQS----L------PQG-------- 93 (393)
T ss_dssp BTTTCCHHHHHHHHHH----HHHTTCS------------EEEEESCHHHHH-HHHHHT----S------CSS--------
T ss_pred eeCCCChHHHHHHHHH----HHHhCCc------------eEEEecCchhHH-Hhhhhc----c------cCC--------
Confidence 3445679999999854 6666543 467778885444 333321 1 111
Q ss_pred ceEEEecCCCchHHHHHHH--H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHh
Q psy11047 301 RLVAYCSDQAHSSVEKAGL--I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCL 376 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa~--L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eI 376 (943)
-.|+++...-.....-+. + .+..+..+.. +.++++++++.+ +.+|.+=.-++.+.-+-||+.|
T Consensus 94 -d~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~------~~~~~~~~i~~~------t~lv~~EspsNP~l~v~Di~~i 160 (393)
T d1n8pa_ 94 -SHAVSIGDVYGGTHRYFTKVANAHGVETSFTND------LLNDLPQLIKEN------TKLVWIETPTNPTLKVTDIQKV 160 (393)
T ss_dssp -CEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS------HHHHHHHHSCSS------EEEEEECSSCTTTCCCCCHHHH
T ss_pred -CeeeeeeeecccchhhhhhhhhcccceeEEeec------chHHHHHHhhhh------cceeEecCcchhhhhccchhhh
Confidence 245666666655555442 2 2334555432 356788887655 6677777788888889999999
Q ss_pred hhhccccccccccccccCchHHHHH----HcCCCCCccchhhhHHhhhcCC
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFIL----SYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar----~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++ +|+ ++|+ .+-||-.|+..
T Consensus 161 a~--------------------~a~~~~~~~g~-------~lvVDnT~atP 184 (393)
T d1n8pa_ 161 AD--------------------LIKKHAAGQDV-------ILVVDNTFLSP 184 (393)
T ss_dssp HH--------------------HHHHHTTTTTC-------EEEEECTTTHH
T ss_pred hh--------------------hhhhhcccCCc-------eEEEecCccCc
Confidence 99 888 5677 89999999765
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=97.50 E-value=0.004 Score=64.70 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHH
Q psy11047 607 AQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWN 686 (943)
Q Consensus 607 A~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~ 686 (943)
.+++.+.|++. ++++. +++.+-+.+.+... -...+.+.|.++|. .+.+ ...++|+++. +.++++++++
T Consensus 262 r~~l~~~L~~~-g~~~~-~~~g~f~~~~~~~~--~~~~~~~~L~~~GI-~vr~----~~~~vRis~g---~~ee~~~l~~ 329 (334)
T d2f8ja1 262 RERMKSALREM-GYRIT-DSRGNFVFVFMEKE--EKERLLEHLRTKNV-AVRS----FREGVRITIG---KREENDMILR 329 (334)
T ss_dssp HHHHHHHHHHH-TCEEC-CCCSSEEEEECCHH--HHHHHHHHHHHTTE-ECEE----ETTEEEEECC---CHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCeEC-CCCceEEEEECCCC--CHHHHHHHHHHCCC-EECC----CCCeEEEEcC---CHHHHHHHHH
Confidence 34455556555 67775 45666555555432 35788888888885 3432 2468999654 5678899988
Q ss_pred HHHH
Q psy11047 687 EIRN 690 (943)
Q Consensus 687 ~I~~ 690 (943)
+|++
T Consensus 330 ~l~~ 333 (334)
T d2f8ja1 330 ELEV 333 (334)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=97.50 E-value=0.017 Score=63.19 Aligned_cols=131 Identities=8% Similarity=0.004 Sum_probs=89.2
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 221 FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 221 ~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
......|....+|+.+ |.|=|.. .++.+++|-.|...++++- + . +
T Consensus 52 YsR~~nPT~~~LE~~l----a~LE~~~------------~a~~~~SGmaAi~~~~~~l----~------~---------~ 96 (421)
T d2ctza1 52 YSRIMNPTVDVLEKRL----AALEGGK------------AALATASGHAAQFLALTTL----A------Q---------A 96 (421)
T ss_dssp CBTTBCHHHHHHHHHH----HHHHTCS------------EEEEESSHHHHHHHHHHHH----C------C---------T
T ss_pred ecCCCCHHHHHHHHHH----HHHhCCC------------eEEEecChHHHHHHHHHhh----c------c---------c
Confidence 3445789999999854 6666653 4678888877765555431 1 1 2
Q ss_pred ceEEEecCCCchHHHHHHH--H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHh
Q psy11047 301 RLVAYCSDQAHSSVEKAGL--I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCL 376 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa~--L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eI 376 (943)
..+|+++........+-+. + .+..+..+..++ ..+..++.++.+ +.+|.+=.-++.+.-+-||+.|
T Consensus 97 gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~----~~~~~~~~~~~~------t~li~~EtpsNP~l~v~Di~~i 166 (421)
T d2ctza1 97 GDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE----RPEEFLALTDEK------TRAWWVESIGNPALNIPDLEAL 166 (421)
T ss_dssp TCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHH
T ss_pred ccceeecCCcCCchhHHHHHHHhhccccceeccccc----CcchhccccCCC------ceEEEEcCCCcceeEecchHHH
Confidence 2357888877766655442 2 233555554321 244545555544 6788888889999999999999
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++ +|+++|+ .+-||..|+..
T Consensus 167 ~~--------------------iA~~~g~-------~~vvDnT~a~t 186 (421)
T d2ctza1 167 AQ--------------------AAREKGV-------ALIVDNTFGMG 186 (421)
T ss_dssp HH--------------------HHHHHTC-------EEEEECGGGGG
T ss_pred HH--------------------HHHhcCC-------ceEeccccccc
Confidence 99 9999999 99999999854
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=97.50 E-value=0.026 Score=60.56 Aligned_cols=86 Identities=9% Similarity=-0.043 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHH
Q psy11047 605 RLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRD 684 (943)
Q Consensus 605 ~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~l 684 (943)
.+.+.+.+.+.+.+.+.-+. ..-.+..|.+.....-...+..++.++|. ++.+. +..++|+..+..+|++||+++
T Consensus 318 ~~~~~l~~~~~~~~~v~~vr-g~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl-~~~~~---~~~~ir~~Ppl~it~~~id~~ 392 (404)
T d1z7da1 318 PFLENLKRELKDSKIVRDVR-GKGLLCAIEFKNELVNVLDICLKLKENGL-ITRDV---HDKTIRLTPPLCITKEQLDEC 392 (404)
T ss_dssp HHHHHHHHHHTTCTTEEEEE-EETTEEEEEECTTTCCHHHHHHHHHHTTE-ECCEE---TTTEEEECCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEE-eeCcEEEEEEcCCcccHHHHHHHHHhCCe-EEecC---CCCEEEEECCcCCCHHHHHHH
Confidence 34455666666665442211 12234556665433334667888888885 44432 345799987777899999999
Q ss_pred HHHHHHHHHHH
Q psy11047 685 WNEIRNTATEI 695 (943)
Q Consensus 685 l~~I~~~~~~l 695 (943)
++.|++..+++
T Consensus 393 ~~~l~~alk~~ 403 (404)
T d1z7da1 393 TEIIVKTVKFF 403 (404)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999987654
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.35 E-value=0.021 Score=62.62 Aligned_cols=82 Identities=12% Similarity=0.023 Sum_probs=52.9
Q ss_pred HHHHHHHHHhCCCCe--EEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHH
Q psy11047 606 LAQKFEALVLGDPRF--EIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 606 LA~~l~~~L~~~p~~--eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ 683 (943)
+.+.+.++..+.|.+ ++=. .--++.|.+.+ +....++.+.+.++|. ++.++ +..+||+.....+|++||+.
T Consensus 377 l~~~l~~l~~~~~~~i~~vrG--~Gl~~~ie~~~-~~~~~~i~~~~~~~Gl-l~~~~---~~~~ir~~PpL~it~~eid~ 449 (461)
T d1ohwa_ 377 LLTGLLDLQARYPQFISRVRG--RGTFCSFDTPD-ESIRNKLISIARNKGV-MLGGC---GDKSIRFRPTLVFRDHHAHL 449 (461)
T ss_dssp HHHHHHHHHHHCTTTCEEEEE--ETTEEEEECSS-HHHHHHHHHHHHHTTE-ECEEE---TTTEEECCCCTTCCHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEeee--eeEEEEEEcCC-HHHHHHHHHHHHHCCe-EEeeC---CCCEEEEeCCcCCCHHHHHH
Confidence 445555555555532 1211 12245566543 3466788888888885 44432 44689998777889999999
Q ss_pred HHHHHHHHHHH
Q psy11047 684 DWNEIRNTATE 694 (943)
Q Consensus 684 ll~~I~~~~~~ 694 (943)
+++.|+++..+
T Consensus 450 ~~~~l~~~l~e 460 (461)
T d1ohwa_ 450 FLNIFSDILAD 460 (461)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999887553
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=97.28 E-value=0.019 Score=62.08 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhCCCCeEEecCCCccEEEEEecCC-------ChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCC
Q psy11047 605 RLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE-------NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTT 677 (943)
Q Consensus 605 ~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~-------n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt 677 (943)
.+.+.+.+.+++.|.+.-+. ..-.+..|.+... ..+...+.+++.++|.++ .++.. ....+|+.....+|
T Consensus 329 ~l~~~l~~~~~~~~~v~~vr-g~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~-~~~g~-~~n~i~~~PpL~it 405 (425)
T d1sffa_ 329 KLKDGLLAIAEKHPEIGDVR-GLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLIL-LSCGP-YYNVLRILVPLTIE 405 (425)
T ss_dssp HHHHHHHHHHHTCTTEEEEE-EETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEEC-EEEST-TSCEEEECCCTTCC
T ss_pred hhhhhhhhhHhhCCceEEEE-ccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEE-eccCC-CCCEEEEECCCCCC
Confidence 34455555666665432221 1223445555321 235677888888899643 33222 23579998888899
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11047 678 NDDITRDWNEIRNTATEI 695 (943)
Q Consensus 678 ~edId~ll~~I~~~~~~l 695 (943)
++||+++++.++++.+++
T Consensus 406 ~~eid~~l~~l~~al~ei 423 (425)
T d1sffa_ 406 DAQIRQGLEIISQCFDEA 423 (425)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999998886664
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=97.22 E-value=0.011 Score=64.13 Aligned_cols=153 Identities=11% Similarity=-0.009 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
.|.++ +.+...++.........+ .+..+.+.+.++.+.. ....|+.+|||||-.|+..||.+.-
T Consensus 70 hp~i~-~ai~~~~~~~~~~~~~~~----~~~~la~~~~~~~~~~-----------~~v~f~~sGseA~e~Alk~ar~~t~ 133 (427)
T d2gsaa_ 70 HPEVI-EALKVAMEKGTSFGAPCA----LENVLAEMVNDAVPSI-----------EMVRFVNSGTEACMAVLRLMRAYTG 133 (427)
T ss_dssp CHHHH-HHHHHHHTTCSCCSSCCH----HHHHHHHHHHHHSTTC-----------SEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred cHHHH-HHHHHHHHhcCccccchh----HHHHHHHHHHhhCCcc-----------ccccccCCcHHHHHHHHHHHHHhcC
Confidence 34444 445555554333222222 2333445556665432 2467999999999999999986521
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHH--------HHHHCC-----------ccEEEEecCCCCCcCHHHHHHH
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEK--------AGLIGL-----------VNMRYIESDDKLSLRGDKLIEA 344 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~K--------Aa~LG~-----------~~v~~Vp~D~~grmD~daLe~a 344 (943)
.+-++-....-|=...- ...++. .....++. -|+++|++.
T Consensus 134 ----------------r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~~le~~ 192 (427)
T d2gsaa_ 134 ----------------RDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-----NDLEAVKAL 192 (427)
T ss_dssp ----------------CCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECT-----TCHHHHHHH
T ss_pred ----------------CCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCc-----chHHHHHHH
Confidence 11122222222311100 011111 12333332 368999999
Q ss_pred HHHhhccCCCcEEEEEecCCCccccccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhh
Q psy11047 345 IERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 420 (943)
Q Consensus 345 I~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~ 420 (943)
+++... ...+|+.----...|.+-| ++.|.+ +|++||+ .+.+|-.+
T Consensus 193 ~~~~~~---~iaavi~Epi~g~~G~~~~~~~~l~~l~~--------------------lc~~~~~-------llI~DEv~ 242 (427)
T d2gsaa_ 193 FAENPG---EIAGVILEPIVGNSGFIVPDAGFLEGLRE--------------------ITLEHDA-------LLVFDEVM 242 (427)
T ss_dssp HTTSTT---TEEEEEECSSBCSSSCBCCCTTHHHHHHH--------------------HHHHTTC-------EEEEECTT
T ss_pred HHhCCC---CeEEEEEcCCcCCCCCccCCHHHHHHHHH--------------------HHHHhce-------eeeecccc
Confidence 876422 2444444332233466655 888888 9999999 99999999
Q ss_pred cCC
Q psy11047 421 LGD 423 (943)
Q Consensus 421 GG~ 423 (943)
.|+
T Consensus 243 tG~ 245 (427)
T d2gsaa_ 243 TGF 245 (427)
T ss_dssp TBT
T ss_pred ccc
Confidence 776
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=97.21 E-value=0.051 Score=58.58 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 640 ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 640 ~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
.+...+.+.+.++|.+.-....-....++|+.....+|++||+++++.+++..+++
T Consensus 375 ~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v 430 (431)
T d1zoda1 375 GLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 430 (431)
T ss_dssp THHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 45677888888888532111111234589998888899999999999999887765
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=0.014 Score=63.07 Aligned_cols=128 Identities=11% Similarity=0.047 Sum_probs=89.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
....|....+|+.+ ++|=|.. .++.+++|..|...++++. + .+| -
T Consensus 54 R~~nPt~~~le~~l----a~LEg~~------------~a~~~~SGMaAi~~~l~~l----~------~~G---------d 98 (391)
T d1cl1a_ 54 RRGTLTHFSLQQAM----CELEGGA------------GCVLFPCGAAAVANSILAF----I------EQG---------D 98 (391)
T ss_dssp TTCCHHHHHHHHHH----HHHHTCS------------EEEEESSHHHHHHHHHHHH----C------CTT---------C
T ss_pred CCCChhHHHHHHHH----HHHhCCc------------cEEEeccccceeeehhhcc----c------CCC---------C
Confidence 34678899999855 6666653 4688899988887776542 1 122 3
Q ss_pred EEEecCCCchHHHHHHH--HC--CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSSVEKAGL--IG--LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~--LG--~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
.|+++...+....+-+. +. +..+..+..+ |.++++++++++ +.+|..-.-++.+.-+-||+.|++
T Consensus 99 ~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~-----d~~~~~~~i~~~------t~~i~~EtpsNP~l~v~Di~~i~~ 167 (391)
T d1cl1a_ 99 HVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQPN------TKIVFLESPGSITMEVHDVPAIVA 167 (391)
T ss_dssp EEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT-----CGGGGGGTCCTT------EEEEEEESSCTTTCCCCCHHHHHH
T ss_pred eEEEecccccchhhhhhhcccccccccccccCc-----cccccccccccc------cceeeecccCcccccccccHHHHH
Confidence 57888888877766552 32 3355666543 456667666654 567777777777888888999999
Q ss_pred hccccccccccccccCchHHHHHHc--CCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSY--FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~--Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++ |+ .+-||-.|+..
T Consensus 168 --------------------~a~~~~~g~-------~~vVDnT~atP 187 (391)
T d1cl1a_ 168 --------------------AVRSVVPDA-------IIMIDNTWAAG 187 (391)
T ss_dssp --------------------HHHHHCTTC-------EEEEECTTTTT
T ss_pred --------------------HHHhccCCc-------EEEEeccccch
Confidence 88775 88 89999999775
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.018 Score=62.69 Aligned_cols=58 Identities=12% Similarity=-0.028 Sum_probs=40.8
Q ss_pred EEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 630 MVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 630 iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
+.+|.+... .....+.+.+.++|. ++.+. + .++|+....-+|++||+++++.|++..+
T Consensus 365 ~~~~e~~~~-~~~~~~~~~~~~~Gl-~~~~~---g-~~i~~~Ppl~it~~eid~~~~~l~~al~ 422 (429)
T d1s0aa_ 365 IGVVETTHP-VNMAALQKFFVEQGV-WIRPF---G-KLIYLMPPYIILPQQLQRLTAAVNRAVQ 422 (429)
T ss_dssp EEEEEESSC-BCHHHHHHHHHHTTE-ECCCB---T-TEEEECCCTTCCHHHHHHHHHHHHHHTS
T ss_pred EEEEEecCc-ccHHHHHHHHHHCCc-EEEec---C-CEEEEeCCcCCCHHHHHHHHHHHHHHHH
Confidence 445666532 235678888888885 34331 2 4899987778899999999999887643
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=96.24 E-value=0.063 Score=56.86 Aligned_cols=171 Identities=11% Similarity=0.069 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHhccCcc--ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFT--WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTE 281 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~--~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~ 281 (943)
+|++ -+......+..... |.......++-..+.+|+.+--+.+-. ......+.|.|+|.++..|+.+....
T Consensus 50 ~~~V-~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (412)
T d1ajsa_ 50 LPVV-RKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQ------EKRVGGVQSLGGTGALRIGAEFLARW 122 (412)
T ss_dssp CHHH-HHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH------TTCEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred cHHH-HHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccc------cccceeecccchhhHHHHHHHHHHHH
Confidence 3443 34444444433333 333334566666676666554443211 11134677889998887776543221
Q ss_pred HHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEEec--CCCCCcCHHHHHHHHHHhhccCCCcEEE
Q psy11047 282 AIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYIES--DDKLSLRGDKLIEAIERDKKKHLIPFFI 358 (943)
Q Consensus 282 ~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~kG~~P~~V 358 (943)
+.. ...|| + .|++++-.-....-.+. .|...+...+. +..+.+|.+++++.+..... .+.++
T Consensus 123 -~~~--~~~pG--------d-~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~i 187 (412)
T d1ajsa_ 123 -YNG--TNNKD--------T-PVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPE---FSIFV 187 (412)
T ss_dssp -SSS--SSCCC--------S-CEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCT---TCEEE
T ss_pred -hhh--cCCCC--------C-EEEEeCCcchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhccC---CcEEE
Confidence 110 01222 2 24555444444444444 46544444433 34557888888877765422 26677
Q ss_pred EEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 359 FSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 359 VaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+...+-||.+-+ +++|.+ +|++|++ ++-.|-+|...
T Consensus 188 l~~~P~NPTG~v~s~e~~~~i~~--------------------la~~~~~-------~ii~De~Y~~l 228 (412)
T d1ajsa_ 188 LHACAHNPTGTDPTPEQWKQIAS--------------------VMKRRFL-------FPFFDSAYQGF 228 (412)
T ss_dssp EESSSCTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEEESCTTT
T ss_pred EecCCCCCcCCCCCHHHHHHHHH--------------------HHhhCCE-------EEEecHhhhhh
Confidence 77888999999865 677777 9999999 99999999876
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.04 E-value=0.00092 Score=74.26 Aligned_cols=83 Identities=40% Similarity=0.607 Sum_probs=61.9
Q ss_pred cccccccccccCchH-----HHHHHcCCCC------CccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHH
Q psy11047 383 KGLGFYKMKLQTNFP-----NFILSYFPKF------QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKL 451 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR-----~iar~~Gl~~------~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kl 451 (943)
.|+++|+++++|+|+ ...+.+|.++ +.+++.-++-......+.|++..++.+++||||+.+.|++|+++
T Consensus 344 ~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~d~~n~~l 423 (476)
T d1js3a_ 344 TDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEAL 423 (476)
T ss_dssp CCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEccCChHHHHHH
Confidence 578999999999999 3344455543 22333444433343445789999999999999999999999999
Q ss_pred HHHhhccCcccccc
Q psy11047 452 LKRLNSKGRLHCVP 465 (943)
Q Consensus 452 l~~l~~~G~~~~p~ 465 (943)
+++++++|++++..
T Consensus 424 ~~~l~~~G~~~~s~ 437 (476)
T d1js3a_ 424 LERINSARKIHLVP 437 (476)
T ss_dssp HHHHHHHTSCBCEE
T ss_pred HHHHHhcCCEEEee
Confidence 99999999886543
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=95.50 E-value=0.094 Score=54.87 Aligned_cols=162 Identities=10% Similarity=0.020 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHhcc-CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCL-GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEA 282 (943)
Q Consensus 204 ~~silgd~L~~alN~n-~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~ 282 (943)
+|+ +.+.+..+.+.. ...|......-++=..+.+++.+.-+.... ...++|+||+.+..+++.....
T Consensus 46 ~~~-V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~-- 113 (394)
T d2ay1a_ 46 MRA-VHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSET---------TATLATVGGTGALRQALELARM-- 113 (394)
T ss_dssp CHH-HHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGG---------EEEEEEEHHHHHHHHHHHHHHH--
T ss_pred CHH-HHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhcccccccc---------ccceeccCchHHHHHHHHHhhh--
Confidence 344 445555544332 223444444455555566665544333221 3567888888776555443211
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEEec--CCCCCcCHHHHHHHHHHhhccCCCcEEEE
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYIES--DDKLSLRGDKLIEAIERDKKKHLIPFFIF 359 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~kG~~P~~VV 359 (943)
. .+| ..|++++-.-..-...+. .|. +++.++. +..+..+.+++.+.+..... ...+++
T Consensus 114 ~------~~g---------d~V~~p~p~~~~y~~~~~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~ 174 (394)
T d2ay1a_ 114 A------NPD---------LRVFVSDPTWPNHVSIMNFMGL-PVQTYRYFDAETRGVDFEGMKADLAAAKK---GDMVLL 174 (394)
T ss_dssp H------CTT---------CCEEEEESCCHHHHHHHHHHTC-CEEEEECEETTTTEECHHHHHHHHHTCCT---TCEEEE
T ss_pred c------CCc---------eEEEEecccccchHHHHHHcCC-EEEEecccchhcccccchhHHHHHhhccc---CcEEEE
Confidence 1 122 235555434433333333 454 6777776 35666777777776655432 256777
Q ss_pred EecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 360 SGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 360 aTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+...+-||.+-+ +++|++ +|++|++ ++-.|-+|+..
T Consensus 175 ~~~p~NPTG~~~s~e~~~~l~~--------------------la~~~~~-------~ii~De~Y~~l 214 (394)
T d2ay1a_ 175 HGCCHNPTGANLTLDQWAEIAS--------------------ILEKTGA-------LPLIDLAYQGF 214 (394)
T ss_dssp ESSSCTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEEECCTTS
T ss_pred eCCCCCCCCCCCCHHHHHHHHH--------------------HhhcceE-------EEEEeccchhh
Confidence 7778889998855 667777 9999999 99999999887
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=94.84 E-value=0.095 Score=55.21 Aligned_cols=162 Identities=8% Similarity=-0.088 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhccC-ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCC---hHHHHHHHHHHHHHHH
Q psy11047 207 LLGDMLSDAINCLG-FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTT---ASESTLICLLAGRTEA 282 (943)
Q Consensus 207 ilgd~L~~alN~n~-~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsG---GTeANL~AL~aAR~~~ 282 (943)
.+-+.+..+.+... ..|.......++=+.+.+|+.+-.+.... ...++|.+ |+.+. .++...-..+
T Consensus 50 ~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~---------~~~i~~~~~~~~~g~~-~~~~~~~~~l 119 (401)
T d7aata_ 50 CVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFK---------SGRYVTVQGISGTGSL-RVGANFLQRF 119 (401)
T ss_dssp HHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH---------TTCEEEEEEEHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccC---------cCceEEeccchHHHHH-HHHHHhhHhh
Confidence 34455555554433 23544445566666777777665544322 12233333 33332 2222221111
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEec--CCCCCcCHHHHHHHHHHhhccCCCcEEEEE
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIES--DDKLSLRGDKLIEAIERDKKKHLIPFFIFS 360 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~kG~~P~~VVa 360 (943)
+ .|| +- |++++=.-....-.+.+-+.+++.+|+ ++.+..+.+.+.+.+..... .+.+++.
T Consensus 120 ~------~pG--------d~-Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iii 181 (401)
T d7aata_ 120 F------KFS--------RD-VYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPE---KSIILLH 181 (401)
T ss_dssp C------TTC--------CE-EEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCT---TCEEEEE
T ss_pred c------CCC--------ce-EEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcCCC---ceEEEEe
Confidence 1 233 22 444433333333444444458888886 45678899998888765322 3678888
Q ss_pred ecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 361 GLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 361 TaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+...+-||.+-+ +++|.+ +|++|++ |+..|-+|...
T Consensus 182 ~~p~NPTG~~~s~e~~~~l~~--------------------~a~~~~~-------~ii~De~Y~~l 220 (401)
T d7aata_ 182 ACAHNPTGVDPRQEQWKELAS--------------------VVKKRNL-------LAYFDMAYQGF 220 (401)
T ss_dssp SSSCTTTCCCCCHHHHHHHHH--------------------HHHHTTC-------EEEEEESCTTT
T ss_pred cCCCCCccccCCHHHHHHHHH--------------------HHhcceE-------EEEEeccchhh
Confidence 888999998855 667777 9999999 99999999877
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=0.27 Score=51.45 Aligned_cols=166 Identities=10% Similarity=-0.035 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHH-hccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAI-NCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEA 282 (943)
Q Consensus 204 ~~silgd~L~~al-N~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~ 282 (943)
++++. +.+..+. ++....|.......++=..+.+|+.+..+.... ......+.|.||+.+...++..-..
T Consensus 46 ~~~V~-~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~l~~-- 116 (396)
T d2q7wa1 46 LTSVK-KAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALIN------DKRARTAQTPGGTGALRVAADFLAK-- 116 (396)
T ss_dssp CHHHH-HHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH------TTCEEEEEESHHHHHHHHHHHHHHH--
T ss_pred CHHHH-HHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCccc------ccceeeeccchHHHHHHHHHHHHhh--
Confidence 45544 4444443 333334555555566666677776665443211 0112345677777665444332110
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEE
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFS 360 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVa 360 (943)
. .+| ..|++.+-.-....-.+.+-+.+++.++.. +.+..+...+.+.+.... ..+.+++.
T Consensus 117 ~------~~g---------d~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~ 178 (396)
T d2q7wa1 117 N------TSV---------KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ---AGDVVLFH 178 (396)
T ss_dssp H------SCC---------CEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC---TTCEEEEE
T ss_pred c------ccc---------eEEEEecCCCccchHHHHHcCCeeEecccccccccccccchHHHHHHHhc---cCcEEEEe
Confidence 0 122 235555544333344444444477777764 455667777777665442 23667777
Q ss_pred ecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 361 GLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 361 TaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+...+-||.+-+ +++|.+ +|++|++ ++..|-+|...
T Consensus 179 ~~P~NPTG~~~s~e~~~~l~~--------------------la~~~~~-------~ii~De~Y~~l 217 (396)
T d2q7wa1 179 GCCHNPTGIDPTLEQWQTLAQ--------------------LSVEKGW-------LPLFDFAYQGF 217 (396)
T ss_dssp CSSCTTTCCCCCHHHHHHHHH--------------------HHHHHTC-------EEEEEESCTTS
T ss_pred cCCcCCcCeecCHHHHHHHHH--------------------HHhcCCe-------EEEEecccccc
Confidence 778899998855 667777 9999999 99999999877
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=90.41 E-value=0.48 Score=49.97 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=64.0
Q ss_pred EEecCCCchHHHHHHHHCCccEEEEec--CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhh
Q psy11047 304 AYCSDQAHSSVEKAGLIGLVNMRYIES--DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGT 378 (943)
Q Consensus 304 V~~S~~aHySv~KAa~LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~ 378 (943)
|++++-.-......+..-+..++.+|. ++.+..+.+.+.+.+..... .+.+++.+...+-||++-+ +++|++
T Consensus 127 Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~i~~P~NPTG~~~s~~~~~~i~~ 203 (412)
T d1yaaa_ 127 VYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPE---GSIFVLHSCAHNPTGLDPTSEQWVQIVD 203 (412)
T ss_dssp EEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCT---TCEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred EecccccCchhHHHHHHcCCceecccccccccccccchhhhcccccCCC---ceEEEEecCCCCCccccCCHHHHHHHHh
Confidence 444443332223333443447777775 45678899998888876432 3678888888999998865 677777
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++++ ++-.|-+|...
T Consensus 204 --------------------~a~~~~~-------~ii~De~Y~~l 221 (412)
T d1yaaa_ 204 --------------------AIASKNH-------IALFDTAYQGF 221 (412)
T ss_dssp --------------------HHHHTTC-------EEEEEESCTTT
T ss_pred --------------------hhccCCE-------EEeecceeeec
Confidence 9999999 99999999877
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=89.65 E-value=0.38 Score=50.32 Aligned_cols=90 Identities=6% Similarity=-0.107 Sum_probs=63.6
Q ss_pred EEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhh
Q psy11047 304 AYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGT 378 (943)
Q Consensus 304 V~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~ 378 (943)
|++++-......-+..+-+.+++.+|++ +.+..|.+++.+.+..... .+.+++.+...+-||.+-+ +++|.+
T Consensus 124 Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~NPTG~~~s~~~~~~l~~ 200 (397)
T d3tata_ 124 VWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPA---RSIVLLHPCCHNPTGADLTNDQWDAVIE 200 (397)
T ss_dssp CEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCS---SCCCEECSSSCSSSCCCCCHHHHHHHHH
T ss_pred ceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhccc---ccEEEEecCCCCCCCeeCCHHHHHHHHH
Confidence 5566655555555554434478888875 4556788887777664422 3556666678888998855 666777
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++|++ ++-.|-+|+..
T Consensus 201 --------------------~a~~~~~-------~ii~De~Y~~l 218 (397)
T d3tata_ 201 --------------------ILKAREL-------IPFLDIAYQGF 218 (397)
T ss_dssp --------------------HHHHTTC-------CCEECBSCTTS
T ss_pred --------------------HHhhcCe-------eEEeehhhhhh
Confidence 9999999 99999999876
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=84.47 E-value=6.3 Score=41.93 Aligned_cols=107 Identities=7% Similarity=-0.035 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
+||+.+.+ +.++.|=... .....++++|+||++..++.+ +.. ++.. ..+.+...|++.. -
T Consensus 104 ~L~~~i~~-lh~~~gna~t-------~~~~IvvG~Gsteli~~~~~A-----L~~-----~~~~-~~~~pg~~Vv~~~-P 163 (425)
T d2hoxa1 104 ELEKTIKE-LHEVVGNAAA-------KDRYIVFGVGVTQLIHGLVIS-----LSP-----NMTA-TPDAPESKVVAHA-P 163 (425)
T ss_dssp HHHHHHHH-HHHHHTCBCC-------TTCEEEEESHHHHHHHHHHHH-----HSC-----CTTT-CTTSCCEEEEECS-S
T ss_pred HHHHHHHH-HHhhhCCCCC-------CCCEEEECCCHHHHHHHHHHH-----hcc-----cccc-ccCCCCCEEEEec-C
Confidence 67766554 4556663211 013489999999988666654 211 0100 0011223344443 4
Q ss_pred chHHHHH-HH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc
Q psy11047 311 HSSVEKA-GL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 311 HySv~KA-a~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI 370 (943)
.|+..+. +. +|... . ++.+|.+.++++++.+ +.+++.+-..+-+|.+
T Consensus 164 ~y~~Y~~~~~~~~~~~-~------~~~~D~~~~~~~~~~~------~~ii~l~sPnNPtG~l 212 (425)
T d2hoxa1 164 FYPVFREQTKYFDKKG-Y------VWAGNAANYVNVSNPE------QYIEMVTSPNNPEGLL 212 (425)
T ss_dssp CCHHHHHHHHHSCBTT-E------EEEEEGGGGTTCSCGG------GEEEEEESSCTTTCCC
T ss_pred ccccHHHHHHHcCCCC-C------ccCCCHHHHHhhCCCC------ceEEEEECCCCCCcch
Confidence 5555554 44 44422 2 2345666666555543 7789999999999976
|