Psyllid ID: psy1107
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 218 | 2.2.26 [Sep-21-2011] | |||||||
| Q8TCB7 | 284 | Methyltransferase-like pr | yes | N/A | 0.926 | 0.711 | 0.504 | 3e-56 | |
| Q8BVH9 | 282 | Methyltransferase-like pr | yes | N/A | 0.940 | 0.726 | 0.516 | 3e-56 | |
| Q5RDV8 | 282 | Methyltransferase-like pr | yes | N/A | 0.926 | 0.716 | 0.509 | 1e-55 | |
| Q6AXU8 | 287 | Methyltransferase-like pr | yes | N/A | 0.931 | 0.707 | 0.512 | 2e-55 | |
| Q9P7L6 | 307 | Uncharacterized methyltra | yes | N/A | 0.798 | 0.566 | 0.435 | 7e-39 | |
| A8KBL7 | 353 | Methyltransferase-like pr | no | N/A | 0.885 | 0.546 | 0.372 | 7e-38 | |
| Q86BS6 | 325 | Methyltransferase-like pr | no | N/A | 0.844 | 0.566 | 0.419 | 5e-35 | |
| Q5M8E6 | 337 | Methyltransferase-like pr | no | N/A | 0.830 | 0.537 | 0.380 | 1e-34 | |
| Q8T199 | 437 | O-methyltransferase 3 OS= | yes | N/A | 0.770 | 0.384 | 0.433 | 1e-32 | |
| Q08641 | 628 | Uncharacterized methyltra | yes | N/A | 0.802 | 0.278 | 0.403 | 2e-32 |
| >sp|Q8TCB7|METL6_HUMAN Methyltransferase-like protein 6 OS=Homo sapiens GN=METTL6 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 218 bits (554), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 142/212 (66%), Gaps = 10/212 (4%)
Query: 13 APILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHE 72
A ILT + + L+R + LVS +++EQ +K WDLFYKRN T FFKDR+WT EF E
Sbjct: 11 ARILTSEEEEKLKRDQT-LVSDFKQQKLEQEAQKNWDLFYKRNSTNFFKDRHWTTREFEE 69
Query: 73 ------FVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD 126
F +Q + +LE GCGVGN +FPLL + +ACD SPRA+ + K NPLYD
Sbjct: 70 LRSCREFEDQKL---TMLEAGCGVGNCLFPLLEEDPNIFAYACDFSPRAIEYVKQNPLYD 126
Query: 127 ASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186
+ VF CD+T+DD+L+ VP SVD+ LIFVLSA+HP+K V++N++ +LK G +L
Sbjct: 127 TERCKVFQCDLTKDDLLDHVPPESVDVVMLIFVLSAVHPDKMHLVLQNIYKVLKPGKSVL 186
Query: 187 FRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218
FRDYGL+D A +RFK K+ EN Y+RQD TR
Sbjct: 187 FRDYGLYDHAMLRFKASSKLGENFYVRQDGTR 218
|
Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8BVH9|METL6_MOUSE Methyltransferase-like protein 6 OS=Mus musculus GN=Mettl6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 141/209 (67%), Gaps = 4/209 (1%)
Query: 13 APILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHE 72
A IL+ + + L+R + LVS +++E+ +K WDLFYKRN T FFKDR+WT EF E
Sbjct: 11 ARILSTEEEEKLKRDQA-LVSAFKQQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTREFEE 69
Query: 73 FVNQDVGEG---VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASK 129
+ EG LLE GCGVGN +FPLL + +ACD SPRAV++ K +PLY+A +
Sbjct: 70 LRSCREYEGQKLTLLEAGCGVGNCLFPLLEEDLNLFAYACDFSPRAVDYVKQHPLYNAER 129
Query: 130 MNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189
VF CD+T DD+L+ VP SVD TLIFVLSA+HP K V+ N++ +LK G +LFRD
Sbjct: 130 CKVFQCDLTRDDLLDHVPPESVDAVTLIFVLSAVHPEKMRLVLLNVYKVLKPGRSVLFRD 189
Query: 190 YGLHDMAQMRFKPGHKISENLYMRQDKTR 218
YGL+D A +RFK G K+ EN Y+RQD TR
Sbjct: 190 YGLNDHAMLRFKAGSKLGENFYVRQDGTR 218
|
Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5RDV8|METL6_PONAB Methyltransferase-like protein 6 OS=Pongo abelii GN=METTL6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (549), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/212 (50%), Positives = 142/212 (66%), Gaps = 10/212 (4%)
Query: 13 APILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEF-- 70
A ILT + + L+R + LVS +++EQ +K WDLFYKRN T FFKDR+WT EF
Sbjct: 11 ARILTSEEEEKLKRDQT-LVSDFKQQKLEQEAQKNWDLFYKRNSTNFFKDRHWTTREFEE 69
Query: 71 ----HEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD 126
EF +Q + +LE G GVGN +FPLL + +ACD SPRAV + K NPLYD
Sbjct: 70 LRSCREFEDQKL---TMLEAGRGVGNCLFPLLEEDPNIFAYACDFSPRAVEYVKQNPLYD 126
Query: 127 ASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186
+ VF CD+T+DD+L+ VP SVD+ LIFVLSA+HP+K V++N++ +LK G +L
Sbjct: 127 TERCKVFQCDLTKDDLLDHVPPESVDVVMLIFVLSAVHPDKMHLVLQNIYKVLKPGKSVL 186
Query: 187 FRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218
FRDYGL+D A +RFK G K+ EN Y+RQD TR
Sbjct: 187 FRDYGLYDHAMLRFKAGSKLGENFYVRQDGTR 218
|
Probable methyltransferase. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6AXU8|METL6_RAT Methyltransferase-like protein 6 OS=Rattus norvegicus GN=Mettl6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (548), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 139/207 (67%), Gaps = 4/207 (1%)
Query: 15 ILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV 74
IL+ + L+R + LVS +++E+ +K WDLFYKRN T FFKDR+WT EF E
Sbjct: 13 ILSTGEEEKLKRDQA-LVSAFKQQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTREFEELR 71
Query: 75 NQDVGEG---VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMN 131
+ EG LLE GCGVGN +FPLL + +ACD SPRAV++ K +PLY+A +
Sbjct: 72 SCREYEGQKLTLLEAGCGVGNCLFPLLEEDSNIFAYACDFSPRAVDYVKQHPLYNAERCK 131
Query: 132 VFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191
VF CD+T DD+L+ +P SVD TLIFVLSA+HP K V+ N++ +LK G +LFRDYG
Sbjct: 132 VFQCDLTRDDLLDHIPPESVDAVTLIFVLSAVHPEKMHLVLLNVYKVLKPGRSVLFRDYG 191
Query: 192 LHDMAQMRFKPGHKISENLYMRQDKTR 218
L+D A +RFK G K+ EN Y+RQD TR
Sbjct: 192 LNDHAMLRFKAGSKLGENFYVRQDGTR 218
|
Probable methyltransferase. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9P7L6|METL_SCHPO Uncharacterized methyltransferase-like protein SPBC21C3.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC21C3.07c PE=3 SV=2 | Back alignment and function description |
|---|
Score = 160 bits (404), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 111/179 (62%), Gaps = 5/179 (2%)
Query: 45 KKYWDLFYKRNETKFFKDRNWTVNEFHEFVN---QDVGEGVLLEVGCGVGNFIFPLLSWS 101
++YWD FY +NE KFF +R W EF E ++ +D GE +LE+GCG GN I+P+L +
Sbjct: 80 ERYWDQFYGKNEGKFFMNRRWIAQEFPELLDLLKEDAGEKSILEIGCGAGNTIWPILKEN 139
Query: 102 KIC--YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159
K I A D S +A++ K NPLYDA + D+ D+L + S+D TLIF
Sbjct: 140 KNSNLKIFAVDYSEKAIDVVKQNPLYDAKFCSASVWDLAGSDLLRSIEEASIDAITLIFC 199
Query: 160 LSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218
SA+ P+++ ++NL+ +LK GG+ILFRDYG D+ Q+R K +SEN Y+R D TR
Sbjct: 200 FSALSPDQWQQAIENLYRLLKPGGLILFRDYGRLDLTQLRAKKNRILSENFYIRGDGTR 258
|
Potential methyltransferase. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A8KBL7|MEL2A_DANRE Methyltransferase-like protein 2-A OS=Danio rerio GN=mettl2a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (396), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 123/228 (53%), Gaps = 35/228 (15%)
Query: 26 RQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDV------- 78
++NS+ + EE + +YW+ FY +E +FFKDR+W EF E Q
Sbjct: 71 QENSQPLPAEKQEEFDNRANEYWNDFYTIHENRFFKDRHWLFTEFPELAPQQKHLRGAEE 130
Query: 79 ---------GEGV-----------------LLEVGCGVGNFIFPLLSWS--KICYIHACD 110
GE + +LEVGCGVGN +FP+L + +++ CD
Sbjct: 131 KESLEHMLNGEDISLNPTHDEFPGASASYRILEVGCGVGNTVFPILKTNNDPGLFVYCCD 190
Query: 111 ISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFST 170
S AV+ K NP YD S+ + F D++++ +P +S+D+ LIFVLSA+HP K
Sbjct: 191 FSSTAVDLVKSNPEYDPSRCHAFVHDMSDESGEYPMPDHSLDVIVLIFVLSALHPEKMQK 250
Query: 171 VVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218
+ L +LK GG++L RDYG +DMAQ+RFK G +SEN Y+R D TR
Sbjct: 251 SINRLGRLLKPGGVLLLRDYGRYDMAQLRFKKGRCLSENFYVRGDGTR 298
|
Probable methyltransferase. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q86BS6|METL_DROME Methyltransferase-like protein OS=Drosophila melanogaster GN=metl PE=1 SV=2 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 110/198 (55%), Gaps = 14/198 (7%)
Query: 32 VSKHVAEEIEQ---NKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVL----- 83
SK AE+ E+ + K+WD FY ++ +FFKDR+W EF E VL
Sbjct: 77 TSKMEAEQKERFQTDAPKFWDSFYGIHDNRFFKDRHWLFTEFPELAPLAADSAVLQPRSI 136
Query: 84 LEVGCGVGNFIFPLLSWSK--ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD 141
E+GCGVGN I PLL +S + CD S RA+ + +D + VF D T D
Sbjct: 137 FELGCGVGNTILPLLQYSSEPQLKVFGCDFSARAIEILRSQRQFDEKRCEVFVMDATLDH 196
Query: 142 ILNQVP--HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMR 199
QVP NS DI +IFVLSAI P K V+ N + L+ GG++LFRDYG +D+AQ+R
Sbjct: 197 W--QVPFEENSQDIIVMIFVLSAIEPKKMQRVLDNCYRYLRPGGLLLFRDYGRYDLAQLR 254
Query: 200 FKPGHKISENLYMRQDKT 217
FK G + +N Y+R D T
Sbjct: 255 FKSGKCMEDNFYVRGDGT 272
|
Probable methyltransferase. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5M8E6|METL2_XENTR Methyltransferase-like protein 2 OS=Xenopus tropicalis GN=mettl2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 114/218 (52%), Gaps = 37/218 (16%)
Query: 38 EEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQ-------DVGEGV-------- 82
EE E +WD FY +E +FFKDR+W EF E ++ + EG
Sbjct: 56 EEYENKASNFWDDFYTIHENRFFKDRHWLFTEFPELSSRSSTQTGTESQEGQVMQLNGCQ 115
Query: 83 --------------------LLEVGCGVGNFIFPLL--SWSKICYIHACDISPRAVNFFK 120
++EVGCGVGN +FP+L + +++ CD S AV K
Sbjct: 116 EETERADVENPFPGASATYRIMEVGCGVGNTVFPILQNNTDPGLFVYCCDFSSTAVELVK 175
Query: 121 LNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLK 180
N LY S+ F DV+++ +P +S+D+ LIFVLSAI+P K V+ L +LK
Sbjct: 176 SNELYSPSRCFAFVHDVSDEQSSFPMPEHSLDVIVLIFVLSAINPAKMQNVISRLSSLLK 235
Query: 181 SGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218
GG IL RDYG +DMAQ+RFK G ++EN Y+R D TR
Sbjct: 236 PGGCILLRDYGRYDMAQLRFKKGRCLAENFYVRGDGTR 273
|
Probable methyltransferase. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8T199|OMT3_DICDI O-methyltransferase 3 OS=Dictyostelium discoideum GN=omt3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 102/173 (58%), Gaps = 5/173 (2%)
Query: 49 DLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHA 108
+L K + K K+R W V + E N + + +LE+GCG G ++PLL + Y +
Sbjct: 169 NLLSKNVDIKELKNR-W-VKDIQELTNDESKKLTVLEIGCGTGATVYPLLKLNPEKYFYV 226
Query: 109 CDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VPHNSVDIATLIFVLSAIHPNK 167
D SP AVN K N LY+ +K+N F CD+ + I V NS+D+ +IFVLSAI +K
Sbjct: 227 FDFSPHAVNLVKSNSLYNEAKLNAFVCDIATEQIPTSIVKDNSIDMMLMIFVLSAISRDK 286
Query: 168 FSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRF--KPGHKISENLYMRQDKTR 218
V +LF LK GG++ RDYGL+DM Q+RF K G KI EN Y+R D TR
Sbjct: 287 MHAVANSLFKSLKPGGVLYIRDYGLYDMTQLRFISKKGKKIDENFYLRADGTR 339
|
Probable methyltransferase. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q08641|AB140_YEAST Uncharacterized methyltransferase ABP140 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ABP140 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 106/186 (56%), Gaps = 11/186 (5%)
Query: 42 QNKKKYWDLFYKRNETKFFKDRNWTVNEF---HEFVNQDVGEGVLLEVGCGVGNFIFPLL 98
+N +YWD+FYK N+ FFKDR W EF + +D + E+GCG GN FP+L
Sbjct: 393 ENPARYWDIFYKNNKENFFKDRKWLQIEFPILYASTRKDAEPVTIFEIGCGAGNTFFPIL 452
Query: 99 --SWSKICYIHACDISPRAVNFFK----LNPLYDASKMNVFPCDVTEDDILNQVPHNSVD 152
+ ++ I A D +PRAV K NP Y V+ + ++ + V +SVD
Sbjct: 453 KDNENENLRIIAADFAPRAVELVKNSEQFNPKY--GHATVWDLANPDGNLPDGVEPHSVD 510
Query: 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYM 212
IA +IFV SA+ PN++ + NL +LK GG I+FRDYG +D+ Q+RFK + EN Y+
Sbjct: 511 IAVMIFVFSALAPNQWDQAMDNLHKILKPGGKIIFRDYGAYDLTQVRFKKNRILEENFYV 570
Query: 213 RQDKTR 218
R D TR
Sbjct: 571 RGDGTR 576
|
Potential methyltransferase (By similarity). Binds F-actin and shows weak F-actin cross-linking activity. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 218 | ||||||
| 157134040 | 295 | hypothetical protein AaeL_AAEL012932 [Ae | 0.944 | 0.698 | 0.556 | 3e-67 | |
| 170029262 | 386 | conserved hypothetical protein [Culex qu | 0.935 | 0.528 | 0.561 | 7e-67 | |
| 198460634 | 291 | GA25046 [Drosophila pseudoobscura pseudo | 0.931 | 0.697 | 0.55 | 1e-64 | |
| 195153403 | 291 | GL17216 [Drosophila persimilis] gi|19411 | 0.931 | 0.697 | 0.55 | 4e-64 | |
| 195119953 | 278 | GI19964 [Drosophila mojavensis] gi|19390 | 0.981 | 0.769 | 0.535 | 2e-63 | |
| 328781421 | 786 | PREDICTED: hypothetical protein LOC55113 | 0.977 | 0.270 | 0.566 | 5e-63 | |
| 189234109 | 269 | PREDICTED: similar to conserved hypothet | 0.958 | 0.776 | 0.568 | 6e-63 | |
| 156397975 | 283 | predicted protein [Nematostella vectensi | 0.986 | 0.759 | 0.547 | 1e-62 | |
| 158298762 | 349 | AGAP009818-PA [Anopheles gambiae str. PE | 0.949 | 0.593 | 0.513 | 5e-62 | |
| 350405024 | 273 | PREDICTED: methyltransferase-like protei | 0.944 | 0.754 | 0.569 | 6e-61 |
| >gi|157134040|ref|XP_001656312.1| hypothetical protein AaeL_AAEL012932 [Aedes aegypti] gi|157134042|ref|XP_001656313.1| hypothetical protein AaeL_AAEL012932 [Aedes aegypti] gi|108870639|gb|EAT34864.1| AAEL012932-PA [Aedes aegypti] gi|108870640|gb|EAT34865.1| AAEL012932-PB [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 119/214 (55%), Positives = 153/214 (71%), Gaps = 8/214 (3%)
Query: 13 APILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHE 72
A +LTDD LE QN R+VS+ A ++E +K+WDLFYKRNET+FFKDR+WT EF E
Sbjct: 29 AKVLTDDEKLRLEEQNKRMVSEFQAGKLETEARKHWDLFYKRNETRFFKDRHWTTREFEE 88
Query: 73 FVNQDVGEG-------VLLEVGCGVGNFIFPLLS-WSKICYIHACDISPRAVNFFKLNPL 124
+ G +LE+GCGVGN +FPL+ + +I+ACD+SPRAV + + L
Sbjct: 89 LLAGSSASGEDGSIRKTMLEIGCGVGNLVFPLIEDGHRDYFIYACDLSPRAVEMVRQHNL 148
Query: 125 YDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGI 184
YD + M FPCD+T ++ +P S+DIATLIFVLSAIHP+KF TVV N+F ++K GG
Sbjct: 149 YDEAYMKAFPCDITTGEVFGTIPEGSLDIATLIFVLSAIHPDKFRTVVGNIFRLMKPGGT 208
Query: 185 ILFRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218
+LFRDYGL+DMAQ+RFKPGHKI+EN YMRQD TR
Sbjct: 209 VLFRDYGLYDMAQLRFKPGHKIAENFYMRQDGTR 242
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170029262|ref|XP_001842512.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167881615|gb|EDS44998.1| conserved hypothetical protein [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 118/210 (56%), Positives = 153/210 (72%), Gaps = 6/210 (2%)
Query: 15 ILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV 74
+L+D+ LE QN R+VS+ A ++E + +K+WDLFYKRNET+FFKDR+WT EF E +
Sbjct: 30 VLSDEERTRLEEQNKRMVSEFQARKLEADARKHWDLFYKRNETRFFKDRHWTTREFEELL 89
Query: 75 NQDVGEG-----VLLEVGCGVGNFIFPLLS-WSKICYIHACDISPRAVNFFKLNPLYDAS 128
D GEG +LEVGCGVGN +FPL+ + +I ACD+SPRAV+ + + LYD
Sbjct: 90 AVDDGEGSDVVKTMLEVGCGVGNLVFPLIEDGHRDYFIFACDLSPRAVDLVRQHNLYDER 149
Query: 129 KMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188
M FPCD+T +++ + S+DIATLIFVLSAIHP KF VV N+F ++K GG++LFR
Sbjct: 150 YMRAFPCDITTEEVFGTLGEGSLDIATLIFVLSAIHPEKFGAVVGNIFRLMKPGGMVLFR 209
Query: 189 DYGLHDMAQMRFKPGHKISENLYMRQDKTR 218
DYGL+DMAQ+RFKPGHKI EN YMRQD TR
Sbjct: 210 DYGLYDMAQLRFKPGHKIGENFYMRQDGTR 239
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198460634|ref|XP_002138867.1| GA25046 [Drosophila pseudoobscura pseudoobscura] gi|198137080|gb|EDY69425.1| GA25046 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/220 (55%), Positives = 158/220 (71%), Gaps = 17/220 (7%)
Query: 16 LTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVN 75
LT + K LE QN RLV + A ++E + +++WD+FYKRNET+FFKDR+WT EF E ++
Sbjct: 19 LTAEETKKLEEQNKRLVPEFKANKLEVDAQRHWDIFYKRNETRFFKDRHWTTREFQELLD 78
Query: 76 Q-DVGEG----VLLEVGCGVGNFIFPLLSW---------SKIC---YIHACDISPRAVNF 118
Q D+ E LLEVGCGVGN +FPLL S +C Y +ACD SPRAV+F
Sbjct: 79 QSDLREAHQRRALLEVGCGVGNLVFPLLEEQSRAEGNEDSVLCGRFYFYACDFSPRAVDF 138
Query: 119 FKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIM 178
+ NPLYD S + F CD+T + Q+P S+D+ T+IFVLSAIHP+KF VV+NL+ +
Sbjct: 139 VRANPLYDPSNITAFQCDITTQQVHEQIPAGSLDVCTMIFVLSAIHPHKFKDVVQNLWRL 198
Query: 179 LKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218
LK GG++LFRDYGL+DMAQ+RFKPG+KI+ENLY+RQD TR
Sbjct: 199 LKPGGLVLFRDYGLYDMAQLRFKPGNKIAENLYVRQDGTR 238
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195153403|ref|XP_002017616.1| GL17216 [Drosophila persimilis] gi|194113412|gb|EDW35455.1| GL17216 [Drosophila persimilis] | Back alignment and taxonomy information |
|---|
Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 121/220 (55%), Positives = 157/220 (71%), Gaps = 17/220 (7%)
Query: 16 LTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVN 75
LT + K LE QN RLV + A ++E + +++WD+FYKRNET+FFKDR+WT EF E ++
Sbjct: 19 LTAEETKKLEEQNKRLVPEFKANKLEVDAQRHWDIFYKRNETRFFKDRHWTTREFQELLD 78
Query: 76 Q-DVGEG----VLLEVGCGVGNFIFPLLSW---------SKIC---YIHACDISPRAVNF 118
Q D+ E LLEVGCGVGN +FPLL S C Y +ACD SPRAV+F
Sbjct: 79 QSDLREAHQRRTLLEVGCGVGNLVFPLLEEQSRAEGNEDSVPCGRFYFYACDFSPRAVDF 138
Query: 119 FKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIM 178
+ NPLYD S + F CD+T + Q+P S+D+ T+IFVLSAIHP+KF VV+NL+ +
Sbjct: 139 VRANPLYDPSNITAFQCDITTQQVHEQIPAGSLDVCTMIFVLSAIHPHKFKDVVQNLWRL 198
Query: 179 LKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218
LK GG++LFRDYGL+DMAQ+RFKPG+KI+ENLY+RQD TR
Sbjct: 199 LKPGGLVLFRDYGLYDMAQLRFKPGNKIAENLYVRQDGTR 238
|
Source: Drosophila persimilis Species: Drosophila persimilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195119953|ref|XP_002004493.1| GI19964 [Drosophila mojavensis] gi|193909561|gb|EDW08428.1| GI19964 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/224 (53%), Positives = 157/224 (70%), Gaps = 10/224 (4%)
Query: 4 EKSFSNSVVAPILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDR 63
E+ + + D+LNK LE QN RLV + A ++E + +++WDLFYKRNET+FFKDR
Sbjct: 2 EEDIFTTRTKELSADELNK-LEEQNKRLVPEFKANKLEIDAQRHWDLFYKRNETRFFKDR 60
Query: 64 NWTVNEFHEFVNQD-VGEG-VLLEVGCGVGNFIFPLL-------SWSKICYIHACDISPR 114
+WT EF E + ++ GE LLEVGCGVGN +FPLL + + Y +ACD SPR
Sbjct: 61 HWTTREFQELLAEECTGERRTLLEVGCGVGNLVFPLLEEQLKDQTSEQGFYFYACDFSPR 120
Query: 115 AVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKN 174
AV+F + NPLYD + F CD+T + + S+D+ T+IFVLSAIHP++F VVKN
Sbjct: 121 AVDFVRTNPLYDTKHITAFQCDITTQQVHEHIEAASLDVCTMIFVLSAIHPDRFVDVVKN 180
Query: 175 LFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218
L+ +LK GG++LFRDYGL+DMAQ+RFKPGHKISEN YMRQD TR
Sbjct: 181 LWQLLKPGGLVLFRDYGLYDMAQLRFKPGHKISENFYMRQDGTR 224
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328781421|ref|XP_623532.3| PREDICTED: hypothetical protein LOC551133 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats.
Identities = 123/217 (56%), Positives = 156/217 (71%), Gaps = 4/217 (1%)
Query: 5 KSFSNSVVAPILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRN 64
KS S VA LT++ + QNSRLVS+ A ++E++ KK+WDLFYKRN+T+FFKDR+
Sbjct: 6 KSEYASHVAKQLTEEEIVKMRAQNSRLVSEFRANQLEKDAKKHWDLFYKRNDTRFFKDRH 65
Query: 65 WTVNEFHEFVNQDVG--EGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKL 121
WT EF E +N + + VL EVGCGVGNF++PL+ K I ACD+S RAV K
Sbjct: 66 WTTREFDELLNLNTKNEQNVLFEVGCGVGNFVYPLIEDGLKFKMIFACDLSSRAVELTKN 125
Query: 122 NPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKS 181
+ LYD M +F D+T ++ +V + V+IATLIFVLSAIHP KF VV+NL+ +L
Sbjct: 126 HSLYDPENMKIFQTDITTENCFLEVNY-PVNIATLIFVLSAIHPKKFRKVVENLYNVLDK 184
Query: 182 GGIILFRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218
GGI+LFRDYGL+DMAQ+RFKPGHKISENLYMRQD TR
Sbjct: 185 GGIVLFRDYGLYDMAQLRFKPGHKISENLYMRQDGTR 221
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189234109|ref|XP_001813540.1| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] gi|270002521|gb|EEZ98968.1| hypothetical protein TcasGA2_TC004823 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 120/211 (56%), Positives = 154/211 (72%), Gaps = 2/211 (0%)
Query: 10 SVVAPILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNE 69
+ V L+ + LE+QNSRLVS A ++E++ +K+WDLFYKRNE +FFKDR+WT E
Sbjct: 7 TCVPKTLSPEDQHRLEQQNSRLVSDFKASQLEKDARKHWDLFYKRNEARFFKDRHWTTRE 66
Query: 70 FHEFV-NQDVG-EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA 127
F E + NQ G + VLLE+GCGVGNFIFPL+ I ACD+S +A+ + N LY+
Sbjct: 67 FRELLDNQTAGTKRVLLEIGCGVGNFIFPLIEEQLNFDIIACDLSSKAIEIVRSNKLYNE 126
Query: 128 SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
M F D+T +D+LNQV NSVDIATLIFVLSAIHP+KF T ++ + +LK GG++LF
Sbjct: 127 GYMRAFQVDITTEDVLNQVDANSVDIATLIFVLSAIHPDKFVTTLRVIHKVLKPGGVLLF 186
Query: 188 RDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218
RDYGL+DMAQ+RFK GHKIS+N YMRQD TR
Sbjct: 187 RDYGLYDMAQLRFKAGHKISDNFYMRQDGTR 217
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156397975|ref|XP_001637965.1| predicted protein [Nematostella vectensis] gi|156225081|gb|EDO45902.1| predicted protein [Nematostella vectensis] | Back alignment and taxonomy information |
|---|
Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/219 (54%), Positives = 151/219 (68%), Gaps = 4/219 (1%)
Query: 3 EEKSFSNSVVAPILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKD 62
E +S + +LTD+ + LER S +S+ ++EQ+ +K WDLFYKRN T FFKD
Sbjct: 13 ETESSIQGLYPRVLTDEEKQKLERDTS-CISEFKRNKLEQDARKNWDLFYKRNSTNFFKD 71
Query: 63 RNWTVNEFHEFVN---QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFF 119
R WT EF E +N + + E VLLE GCGVGN I PLL Y HACD SPRAVNF
Sbjct: 72 RRWTTREFTELLNVEDEKLNEKVLLEAGCGVGNLINPLLEEGYNFYFHACDFSPRAVNFV 131
Query: 120 KLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIML 179
K +P YD +K+N F CD+T+DD+L +P SVDIATLIFVLSAIHP+K T + N+F +L
Sbjct: 132 KESPFYDEAKVNAFQCDLTKDDLLENIPACSVDIATLIFVLSAIHPDKMITALLNIFKVL 191
Query: 180 KSGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218
K GG++L RDYGL+D A +RF PGHK+SE Y+RQD TR
Sbjct: 192 KPGGLLLLRDYGLYDHAMLRFAPGHKLSEQFYVRQDGTR 230
|
Source: Nematostella vectensis Species: Nematostella vectensis Genus: Nematostella Family: Edwardsiidae Order: Actiniaria Class: Anthozoa Phylum: Cnidaria Superkingdom: Eukaryota |
| >gi|158298762|ref|XP_318925.4| AGAP009818-PA [Anopheles gambiae str. PEST] gi|157014041|gb|EAA43537.4| AGAP009818-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 243 bits (619), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 117/228 (51%), Positives = 150/228 (65%), Gaps = 21/228 (9%)
Query: 12 VAPILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFH 71
A ILT++ LE QN RLV+ A ++EQ +K+WDLFYKRNE +FFKDR+WT EF
Sbjct: 68 AAKILTEEERTKLEEQNKRLVTPFQALKLEQEARKHWDLFYKRNENRFFKDRHWTTREFS 127
Query: 72 EF--------------------VNQDVGEGVLLEVGCGVGNFIFPLLS-WSKICYIHACD 110
E V + E LLE+GCGVGN IFPL+ + +I+ACD
Sbjct: 128 ELLAGEDPAAAASSSPLAKPDNVERISVEKKLLEIGCGVGNLIFPLIEDGHRDYFIYACD 187
Query: 111 ISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFST 170
+SPRAV + + LYD M F CD+T +++ +P S+DI TLIFVLSAIHP KF +
Sbjct: 188 LSPRAVELVQKHNLYDERYMKAFACDITTEEVFQTLPEASLDIVTLIFVLSAIHPEKFQS 247
Query: 171 VVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218
V N++ +LK GG++LFRDYGL+DMAQ+RFKPGHKI+EN YMRQD TR
Sbjct: 248 TVANIYRLLKPGGVVLFRDYGLYDMAQLRFKPGHKIAENFYMRQDGTR 295
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350405024|ref|XP_003487297.1| PREDICTED: methyltransferase-like protein 6-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 119/209 (56%), Positives = 155/209 (74%), Gaps = 3/209 (1%)
Query: 12 VAPILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFH 71
VA LT + + ++ QNSRLVS+ A ++E++ KK+WDLFYKRN+T+FFKDR+WT EFH
Sbjct: 14 VAKKLTQEEIEKMQAQNSRLVSEFRANQLEKDAKKHWDLFYKRNDTRFFKDRHWTTREFH 73
Query: 72 EFVN--QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASK 129
E + + + +LLEVGCGVGNFI+PL+ I ACD+SPRAV K + LY+
Sbjct: 74 ELLGLGTENDQKILLEVGCGVGNFIYPLIEDGLKFKIFACDLSPRAVELAKKHILYNPKN 133
Query: 130 MNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189
+ +F D+T ++ +V + SV+I TLIFVLSAI+P F TVVKNL+ +L GGI+LFRD
Sbjct: 134 IKIFQTDITTENCFCEVDY-SVNIVTLIFVLSAINPTNFRTVVKNLYNVLDIGGIVLFRD 192
Query: 190 YGLHDMAQMRFKPGHKISENLYMRQDKTR 218
YGL+DMAQ+RFKPGHKISENLYMRQD TR
Sbjct: 193 YGLYDMAQLRFKPGHKISENLYMRQDGTR 221
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 218 | ||||||
| UNIPROTKB|Q8TCB7 | 284 | METTL6 "Methyltransferase-like | 0.940 | 0.721 | 0.468 | 9.8e-48 | |
| MGI|MGI:1914261 | 282 | Mettl6 "methyltransferase like | 0.940 | 0.726 | 0.468 | 1.4e-46 | |
| RGD|1359565 | 287 | Mettl6 "methyltransferase like | 0.931 | 0.707 | 0.463 | 3.8e-46 | |
| UNIPROTKB|Q6AXU8 | 287 | Mettl6 "Methyltransferase-like | 0.931 | 0.707 | 0.463 | 3.8e-46 | |
| UNIPROTKB|B4DDX3 | 239 | METTL6 "Methyltransferase-like | 0.444 | 0.405 | 0.556 | 1.2e-41 | |
| UNIPROTKB|F1S1U3 | 411 | METTL8 "Uncharacterized protei | 0.582 | 0.309 | 0.423 | 1.2e-34 | |
| ZFIN|ZDB-GENE-050417-462 | 353 | mettl2a "methyltransferase lik | 0.582 | 0.359 | 0.434 | 1.3e-34 | |
| UNIPROTKB|Q0P5B2 | 378 | METTL2 "Methyltransferase-like | 0.582 | 0.335 | 0.441 | 4.4e-34 | |
| UNIPROTKB|Q5ZHP8 | 370 | METTL2 "Methyltransferase-like | 0.582 | 0.343 | 0.434 | 5.6e-34 | |
| MGI|MGI:1289171 | 389 | Mettl2 "methyltransferase like | 0.582 | 0.326 | 0.426 | 1.1e-33 |
| UNIPROTKB|Q8TCB7 METTL6 "Methyltransferase-like protein 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 98/209 (46%), Positives = 132/209 (63%)
Query: 13 APILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHE 72
A ILT + + L+R + LVS +++EQ +K WDLFYKRN T FFKDR+WT EF E
Sbjct: 11 ARILTSEEEEKLKRDQT-LVSDFKQQKLEQEAQKNWDLFYKRNSTNFFKDRHWTTREFEE 69
Query: 73 FVNQ---DXXXXXXXXXXXXXXNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASK 129
+ + N +FPLL + +ACD SPRA+ + K NPLYD +
Sbjct: 70 LRSCREFEDQKLTMLEAGCGVGNCLFPLLEEDPNIFAYACDFSPRAIEYVKQNPLYDTER 129
Query: 130 MNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189
VF CD+T+DD+L+ VP SVD+ LIFVLSA+HP+K V++N++ +LK G +LFRD
Sbjct: 130 CKVFQCDLTKDDLLDHVPPESVDVVMLIFVLSAVHPDKMHLVLQNIYKVLKPGKSVLFRD 189
Query: 190 YGLHDMAQMRFKPGHKISENLYMRQDKTR 218
YGL+D A +RFK K+ EN Y+RQD TR
Sbjct: 190 YGLYDHAMLRFKASSKLGENFYVRQDGTR 218
|
|
| MGI|MGI:1914261 Mettl6 "methyltransferase like 6" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 98/209 (46%), Positives = 132/209 (63%)
Query: 13 APILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHE 72
A IL+ + + L+R + LVS +++E+ +K WDLFYKRN T FFKDR+WT EF E
Sbjct: 11 ARILSTEEEEKLKRDQA-LVSAFKQQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTREFEE 69
Query: 73 FVN---QDXXXXXXXXXXXXXXNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASK 129
+ + N +FPLL + +ACD SPRAV++ K +PLY+A +
Sbjct: 70 LRSCREYEGQKLTLLEAGCGVGNCLFPLLEEDLNLFAYACDFSPRAVDYVKQHPLYNAER 129
Query: 130 MNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189
VF CD+T DD+L+ VP SVD TLIFVLSA+HP K V+ N++ +LK G +LFRD
Sbjct: 130 CKVFQCDLTRDDLLDHVPPESVDAVTLIFVLSAVHPEKMRLVLLNVYKVLKPGRSVLFRD 189
Query: 190 YGLHDMAQMRFKPGHKISENLYMRQDKTR 218
YGL+D A +RFK G K+ EN Y+RQD TR
Sbjct: 190 YGLNDHAMLRFKAGSKLGENFYVRQDGTR 218
|
|
| RGD|1359565 Mettl6 "methyltransferase like 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 96/207 (46%), Positives = 130/207 (62%)
Query: 15 ILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV 74
IL+ + L+R + LVS +++E+ +K WDLFYKRN T FFKDR+WT EF E
Sbjct: 13 ILSTGEEEKLKRDQA-LVSAFKQQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTREFEELR 71
Query: 75 N---QDXXXXXXXXXXXXXXNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMN 131
+ + N +FPLL + +ACD SPRAV++ K +PLY+A +
Sbjct: 72 SCREYEGQKLTLLEAGCGVGNCLFPLLEEDSNIFAYACDFSPRAVDYVKQHPLYNAERCK 131
Query: 132 VFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191
VF CD+T DD+L+ +P SVD TLIFVLSA+HP K V+ N++ +LK G +LFRDYG
Sbjct: 132 VFQCDLTRDDLLDHIPPESVDAVTLIFVLSAVHPEKMHLVLLNVYKVLKPGRSVLFRDYG 191
Query: 192 LHDMAQMRFKPGHKISENLYMRQDKTR 218
L+D A +RFK G K+ EN Y+RQD TR
Sbjct: 192 LNDHAMLRFKAGSKLGENFYVRQDGTR 218
|
|
| UNIPROTKB|Q6AXU8 Mettl6 "Methyltransferase-like protein 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 96/207 (46%), Positives = 130/207 (62%)
Query: 15 ILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV 74
IL+ + L+R + LVS +++E+ +K WDLFYKRN T FFKDR+WT EF E
Sbjct: 13 ILSTGEEEKLKRDQA-LVSAFKQQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTREFEELR 71
Query: 75 N---QDXXXXXXXXXXXXXXNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMN 131
+ + N +FPLL + +ACD SPRAV++ K +PLY+A +
Sbjct: 72 SCREYEGQKLTLLEAGCGVGNCLFPLLEEDSNIFAYACDFSPRAVDYVKQHPLYNAERCK 131
Query: 132 VFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191
VF CD+T DD+L+ +P SVD TLIFVLSA+HP K V+ N++ +LK G +LFRDYG
Sbjct: 132 VFQCDLTRDDLLDHIPPESVDAVTLIFVLSAVHPEKMHLVLLNVYKVLKPGRSVLFRDYG 191
Query: 192 LHDMAQMRFKPGHKISENLYMRQDKTR 218
L+D A +RFK G K+ EN Y+RQD TR
Sbjct: 192 LNDHAMLRFKAGSKLGENFYVRQDGTR 218
|
|
| UNIPROTKB|B4DDX3 METTL6 "Methyltransferase-like protein 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 54/97 (55%), Positives = 72/97 (74%)
Query: 122 NPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKS 181
NPLYD + VF CD+T+DD+L+ VP SVD+ LIFVLSA+HP+K V++N++ +LK
Sbjct: 77 NPLYDTERCKVFQCDLTKDDLLDHVPPESVDVVMLIFVLSAVHPDKMHLVLQNIYKVLKP 136
Query: 182 GGIILFRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218
G +LFRDYGL+D A +RFK K+ EN Y+RQD TR
Sbjct: 137 GKSVLFRDYGLYDHAMLRFKASSKLGENFYVRQDGTR 173
|
|
| UNIPROTKB|F1S1U3 METTL8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 55/130 (42%), Positives = 81/130 (62%)
Query: 92 NFIFPLLSW---SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPH 148
N +FP+L+ + +++ CD + AV K +P Y A++ F DV +D + P
Sbjct: 213 NSVFPILNTLQNTPESFLYCCDFASGAVELVKSHPSYRAAQCCAFVHDVCDDGLAYPFPD 272
Query: 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISE 208
+D+ L+FVLS+IHP++ VVK L +LK GG++LFRDYG +D Q+RFK GH +SE
Sbjct: 273 GILDVILLVFVLSSIHPDRMQGVVKQLSKLLKPGGMLLFRDYGRYDKTQLRFKRGHCLSE 332
Query: 209 NLYMRQDKTR 218
N Y+R D TR
Sbjct: 333 NFYVRGDGTR 342
|
|
| ZFIN|ZDB-GENE-050417-462 mettl2a "methyltransferase like 2A" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 285 (105.4 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 56/129 (43%), Positives = 82/129 (63%)
Query: 92 NFIFPLLSWSKI--CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHN 149
N +FP+L + +++ CD S AV+ K NP YD S+ + F D++++ +P +
Sbjct: 170 NTVFPILKTNNDPGLFVYCCDFSSTAVDLVKSNPEYDPSRCHAFVHDMSDESGEYPMPDH 229
Query: 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISEN 209
S+D+ LIFVLSA+HP K + L +LK GG++L RDYG +DMAQ+RFK G +SEN
Sbjct: 230 SLDVIVLIFVLSALHPEKMQKSINRLGRLLKPGGVLLLRDYGRYDMAQLRFKKGRCLSEN 289
Query: 210 LYMRQDKTR 218
Y+R D TR
Sbjct: 290 FYVRGDGTR 298
|
|
| UNIPROTKB|Q0P5B2 METTL2 "Methyltransferase-like protein 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 57/129 (44%), Positives = 79/129 (61%)
Query: 92 NFIFPLLSWSK--ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHN 149
N +FP+L + +++ CD S AV + N YD S+ F D+ ++D +P N
Sbjct: 193 NTVFPILQTNNDPSLFVYCCDFSSTAVELVQTNSAYDPSRCFAFVHDLCDEDKSYPMPEN 252
Query: 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISEN 209
S+D+ LIFVLSAI P+K + L +LK GGI+L RDYG +DMAQ+RFK G +SEN
Sbjct: 253 SLDVIILIFVLSAIVPDKMQNAINRLSRLLKPGGIMLLRDYGRYDMAQLRFKKGQCLSEN 312
Query: 210 LYMRQDKTR 218
Y+R D TR
Sbjct: 313 FYVRGDGTR 321
|
|
| UNIPROTKB|Q5ZHP8 METTL2 "Methyltransferase-like protein 2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 260 (96.6 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 56/129 (43%), Positives = 77/129 (59%)
Query: 92 NFIFPLLSWSKI--CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHN 149
N +FP+L + +++ CD S AV+ + N YD+S+ F D+ D +P
Sbjct: 186 NTVFPILQTNNDPGLFVYCCDFSTTAVDLVQSNVEYDSSRCFAFVHDLCNDQSPFPMPDE 245
Query: 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISEN 209
S+DI LIFVLSAI P K V+ L +LK GG+IL RDYG +D+AQ+RFK G +S N
Sbjct: 246 SLDIVILIFVLSAILPEKMQCVINKLSRLLKPGGMILLRDYGRYDLAQLRFKKGQCLSAN 305
Query: 210 LYMRQDKTR 218
Y+R D TR
Sbjct: 306 FYVRGDGTR 314
|
|
| MGI|MGI:1289171 Mettl2 "methyltransferase like 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 55/129 (42%), Positives = 78/129 (60%)
Query: 92 NFIFPLLSWSKI--CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHN 149
N +FP+L + +++ CD S A+ K N YD S+ F D+ ++D VP +
Sbjct: 186 NTVFPILQTNNNPNLFVYCCDFSATAIELLKTNSQYDPSRCYAFVHDLCDEDQSYPVPED 245
Query: 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISEN 209
S+D+ LIFVLSAI P+K + L +LK GG++L RDYG +DMAQ+RFK G +S N
Sbjct: 246 SLDVIVLIFVLSAIVPDKMQKAISKLSRLLKPGGVMLLRDYGRYDMAQLRFKKGQCLSGN 305
Query: 210 LYMRQDKTR 218
Y+R D TR
Sbjct: 306 FYVRGDGTR 314
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8BVH9 | METL6_MOUSE | 2, ., 1, ., 1, ., - | 0.5167 | 0.9403 | 0.7269 | yes | N/A |
| Q5RDV8 | METL6_PONAB | 2, ., 1, ., 1, ., - | 0.5094 | 0.9266 | 0.7163 | yes | N/A |
| Q8TCB7 | METL6_HUMAN | 2, ., 1, ., 1, ., - | 0.5047 | 0.9266 | 0.7112 | yes | N/A |
| Q6AXU8 | METL6_RAT | 2, ., 1, ., 1, ., - | 0.5120 | 0.9311 | 0.7073 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 218 | |||
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-12 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 8e-12 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 4e-07 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 9e-07 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-05 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 1e-04 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 2e-04 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 0.002 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 0.002 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 0.004 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-12
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF----FKLNPLYDASKMNVFPCDVTE 139
L++GCG G + LL DISP A+ L DA ++ + D +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 140 DDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGII 185
D S D+ VL H V++NL +LK GG++
Sbjct: 61 LDP------GSFDVVVASNVLH--HLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 8e-12
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 6/106 (5%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-ASKMNVFPCDVTEDD 141
+L++GCG G L S + DISP A+ + A + V D E
Sbjct: 2 VLDLGCGTGALALALASGPG-ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60
Query: 142 ILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
S D+ L + + ++ +LK GG+++
Sbjct: 61 PE---ADESFDVIISDPPLHHLVEDLAR-FLEEARRLLKPGGVLVL 102
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (113), Expect = 4e-07
Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 3/184 (1%)
Query: 33 SKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGN 92
S AE + + + Y L + + + + G +L++GCG G
Sbjct: 2 SLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGR 61
Query: 93 FIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVD 152
+ Y+ D+SP + + + F +L S D
Sbjct: 62 LALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFD 121
Query: 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYM 212
L+ L +H + ++ L +LK GG ++ D + + R + +
Sbjct: 122 ---LVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAALLGFGDPVLE 178
Query: 213 RQDK 216
R D
Sbjct: 179 RGDI 182
|
Length = 257 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 9e-07
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 12/104 (11%)
Query: 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL 143
L+VGCG G L + D+SP + + + D+ D
Sbjct: 1 LDVGCGTGLLAEALARRGG-ARVTGVDLSPEMLALARKRAPRKFVVGDA--EDLPFPD-- 55
Query: 144 NQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
S D+ VL H ++ + +LK GG ++
Sbjct: 56 -----ESFDVVVSSLVLH--HLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-05
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 82 VLLEVGCGVGNFIFPLLSWSKICY---IHACDISPRAVNFFKLNPLYDASKMNVFPCDVT 138
+L++GCG G F L K+ + DIS A+ K N A K+ +
Sbjct: 6 KVLDLGCGTGYLTFILA--EKLGPGAEVVGIDISEEAIEKAKEN----AKKLGYENVEFI 59
Query: 139 EDDILN----QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194
+ DI Q+ NS D+ VL+ + P+ V++ + +LK GG+++ D L
Sbjct: 60 QGDIEELPQLQLEDNSFDVVISNEVLNHL-PDPDK-VLEEIIRVLKPGGVLIVSDPVLLS 117
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 1e-04
Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 17/118 (14%)
Query: 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF--FKLNPLYDASKMNVFPCDVT 138
+L+ G G G F+ + ++ P A +L A ++ V D
Sbjct: 2 DRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAR 61
Query: 139 EDDILNQVPHNSVDIATLIF------VLSAIHPNKFST---VVKNLFIMLKSGGIILF 187
E L P S D L+ + + + +LK GG+++
Sbjct: 62 ELLEL---PDGSFD---LVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 27/125 (21%)
Query: 84 LEVGCGVGNFIFPLLS-WSKICYIHACDISP----RAVNFFKLNPLY---DASKMNVFPC 135
L++GCG G LL + + +I A DIS +A N + DA K+ +
Sbjct: 39 LDIGCGTGYLTRALLKRFPQAEFI-ANDISAGMLAQAKTKLSENVQFICGDAEKLPLED- 96
Query: 136 DVTEDDILNQVPHNSVDIATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194
+S D LI A+ + S + L +LK GG++ F +G
Sbjct: 97 -------------SSFD---LIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGT 140
Query: 195 MAQMR 199
+ ++R
Sbjct: 141 LHELR 145
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.002
Identities = 27/123 (21%), Positives = 41/123 (33%), Gaps = 25/123 (20%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+L++GCG G + L + D SP AV F L D
Sbjct: 26 VLDIGCGTGILLRLLRERG--FDVTGVDPSPAAVLIFSLF-----------------DAP 66
Query: 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF----RDYGLHDMAQM 198
V D+ T VL + +++ L +LK GG++L D A
Sbjct: 67 DPAVLAGKYDLITAFEVLEHLPD--PPALLQQLRELLKPGGVLLISTPLADDDARLFANW 124
Query: 199 RFK 201
+
Sbjct: 125 HYL 127
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 32/177 (18%), Positives = 58/177 (32%), Gaps = 29/177 (16%)
Query: 26 RQNSRLVSKHVAEEIEQNK-----KKYWDLFY------KRNETK--FFKDRNWTVNEFHE 72
N+ + E +K ++WD K N + + ++ +
Sbjct: 1 MTNTASDDTQNVDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPG 60
Query: 73 FVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNV 132
+L+VGCG G PL D S + + KL+ L ++
Sbjct: 61 --------LRVLDVGCGGGILSEPLARLGASVT--GIDASEKPIEVAKLHALESGVNID- 109
Query: 133 FPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189
+ ED L D+ T + VL H + ++ ++K GGI+
Sbjct: 110 YRQATVED--LAS-AGGQFDVVTCMEVL--EHVPDPESFLRACAKLVKPGGILFLST 161
|
Length = 243 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.004
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFP-CDVT 138
+L++GCG G+ L + D+SP + + N +K+ + P
Sbjct: 2 GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELAREN-----AKLALGPRITFV 56
Query: 139 EDDILNQVP-HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
+ D + + D +F+ ++ L +LK GG ++
Sbjct: 57 QGDAPDALDLLEGFD---AVFIGGGGGD--LLELLDALASLLKPGGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 218 | |||
| KOG2361|consensus | 264 | 100.0 | ||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.88 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.83 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.82 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.79 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.78 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.77 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.77 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.77 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.76 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.76 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.76 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.74 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.74 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.73 | |
| KOG1540|consensus | 296 | 99.73 | ||
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.72 | |
| KOG4300|consensus | 252 | 99.72 | ||
| KOG1270|consensus | 282 | 99.71 | ||
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.71 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.71 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.7 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.7 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.7 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.7 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.7 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.7 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.69 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.69 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.68 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.68 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.66 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.66 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.66 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.65 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.65 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.65 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.65 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.65 | |
| KOG1271|consensus | 227 | 99.65 | ||
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.65 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.64 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.64 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.64 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.64 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.64 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.63 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.62 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.62 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.62 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.62 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.61 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.61 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.6 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.59 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.59 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.59 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.59 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.58 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.56 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.56 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.56 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.56 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.55 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.55 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.54 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.53 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.53 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.53 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.53 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.53 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.53 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.52 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.52 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.52 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.51 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.51 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.5 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.5 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.5 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.49 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.49 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.48 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.48 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.48 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.48 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.47 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.46 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.46 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.45 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.44 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.43 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.43 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.42 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.41 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.4 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.4 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.4 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.4 | |
| KOG1975|consensus | 389 | 99.4 | ||
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.4 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.39 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.39 | |
| KOG3010|consensus | 261 | 99.39 | ||
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.39 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.38 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.38 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.38 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.37 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.36 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.36 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.36 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.35 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.34 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.34 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.33 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.32 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.32 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.31 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.3 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.29 | |
| KOG2899|consensus | 288 | 99.29 | ||
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.28 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.27 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.27 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.25 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.25 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.25 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.24 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.24 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.23 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.2 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.2 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.2 | |
| PLN02366 | 308 | spermidine synthase | 99.19 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.19 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.19 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.18 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.18 | |
| KOG2904|consensus | 328 | 99.18 | ||
| KOG1541|consensus | 270 | 99.18 | ||
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.17 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.17 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.17 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.16 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.15 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.14 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.14 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.14 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.14 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.13 | |
| PLN02476 | 278 | O-methyltransferase | 99.13 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.09 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.08 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.08 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.07 | |
| KOG1499|consensus | 346 | 99.06 | ||
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.06 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.03 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.03 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.0 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.99 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.96 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.96 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.93 | |
| PLN02823 | 336 | spermine synthase | 98.93 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.92 | |
| KOG1331|consensus | 293 | 98.92 | ||
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.92 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.91 | |
| KOG3191|consensus | 209 | 98.9 | ||
| KOG3420|consensus | 185 | 98.89 | ||
| KOG2940|consensus | 325 | 98.89 | ||
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.88 | |
| KOG3178|consensus | 342 | 98.87 | ||
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.85 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.85 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.84 | |
| KOG3045|consensus | 325 | 98.84 | ||
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.84 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.82 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.81 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.8 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.79 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.78 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.77 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.74 | |
| KOG1500|consensus | 517 | 98.71 | ||
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.71 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.7 | |
| KOG1661|consensus | 237 | 98.69 | ||
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.67 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.66 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.65 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.64 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.64 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.64 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.64 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.63 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.6 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.6 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.58 | |
| KOG1663|consensus | 237 | 98.56 | ||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.56 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.56 | |
| KOG1709|consensus | 271 | 98.55 | ||
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.55 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.54 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.53 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.52 | |
| KOG2730|consensus | 263 | 98.51 | ||
| KOG4589|consensus | 232 | 98.51 | ||
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.5 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.5 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.48 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.46 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.45 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.45 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.44 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.41 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.41 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.39 | |
| KOG3987|consensus | 288 | 98.36 | ||
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.36 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.34 | |
| KOG0820|consensus | 315 | 98.34 | ||
| KOG2352|consensus | 482 | 98.34 | ||
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.33 | |
| KOG1269|consensus | 364 | 98.33 | ||
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 98.3 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.29 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.27 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.26 | |
| KOG2915|consensus | 314 | 98.24 | ||
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.21 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.19 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.15 | |
| KOG2187|consensus | 534 | 98.11 | ||
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.09 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 98.06 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.03 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.98 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.94 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.94 | |
| KOG3115|consensus | 249 | 97.93 | ||
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.93 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.88 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.85 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.83 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.76 | |
| KOG3201|consensus | 201 | 97.71 | ||
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.71 | |
| KOG1122|consensus | 460 | 97.68 | ||
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.58 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.57 | |
| KOG1099|consensus | 294 | 97.52 | ||
| KOG2198|consensus | 375 | 97.52 | ||
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.49 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.49 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.44 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.42 | |
| KOG1596|consensus | 317 | 97.4 | ||
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.36 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.35 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.25 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.24 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.23 | |
| KOG2793|consensus | 248 | 97.18 | ||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.17 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.14 | |
| KOG2798|consensus | 369 | 97.07 | ||
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.91 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.91 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.87 | |
| KOG1562|consensus | 337 | 96.87 | ||
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.85 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.74 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.74 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 96.64 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 96.62 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.6 | |
| KOG1253|consensus | 525 | 96.5 | ||
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.45 | |
| KOG4058|consensus | 199 | 96.3 | ||
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.23 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 96.23 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 96.21 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.2 | |
| KOG1501|consensus | 636 | 96.18 | ||
| KOG2671|consensus | 421 | 96.08 | ||
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.91 | |
| KOG0822|consensus | 649 | 95.82 | ||
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.77 | |
| PHA01634 | 156 | hypothetical protein | 95.72 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 95.68 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 95.56 | |
| KOG2539|consensus | 491 | 95.47 | ||
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 95.27 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 95.24 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.17 | |
| KOG2920|consensus | 282 | 95.17 | ||
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.0 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.99 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 94.9 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.86 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 94.82 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.79 | |
| KOG0024|consensus | 354 | 94.77 | ||
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 94.68 | |
| KOG2651|consensus | 476 | 94.51 | ||
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 94.2 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 94.14 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 94.11 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.58 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 93.37 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.35 | |
| KOG1227|consensus | 351 | 93.32 | ||
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 93.22 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 93.17 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 92.95 | |
| KOG2078|consensus | 495 | 92.93 | ||
| KOG2352|consensus | 482 | 92.9 | ||
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 92.85 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 92.77 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 91.94 | |
| KOG0821|consensus | 326 | 91.88 | ||
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 91.55 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 91.48 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 91.47 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 91.39 | |
| KOG3924|consensus | 419 | 91.38 | ||
| PRK11524 | 284 | putative methyltransferase; Provisional | 91.37 | |
| KOG2918|consensus | 335 | 91.35 | ||
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 91.29 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 91.2 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 90.68 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 90.61 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 90.38 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 90.07 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 90.02 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 89.79 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 89.42 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 89.37 | |
| KOG1201|consensus | 300 | 88.75 | ||
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 88.36 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 87.94 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 87.75 | |
| KOG1098|consensus | 780 | 86.69 | ||
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 86.32 | |
| PRK13699 | 227 | putative methylase; Provisional | 86.23 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 86.2 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 85.76 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 85.74 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 85.44 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 85.42 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 84.58 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 83.64 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 83.43 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 82.89 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 82.26 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 82.18 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 81.65 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 80.97 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 80.74 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 80.68 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 80.64 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 80.39 |
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=218.93 Aligned_cols=204 Identities=47% Similarity=0.781 Sum_probs=183.7
Q ss_pred CCChHHHH----HHHhhhccccchhhHHHHhhhhHhhHHHHHHHhhhccCCCcccchHHHHHHh-hhcCCCcEEEEecCC
Q psy1107 15 ILTDDLNK----NLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV-NQDVGEGVLLEVGCG 89 (218)
Q Consensus 15 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vLDiGcG 89 (218)
+|+.++.. .++.+....+..++...|.....++|+.+|..+...|+.+++|+.+++++++ ....+..+|||+|||
T Consensus 2 ~wske~~~~a~~~~k~~~~~~~~~~~~~~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCG 81 (264)
T KOG2361|consen 2 EWSKEEEAAARKKVKEQSASRVLEEEVVKYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCG 81 (264)
T ss_pred CcCHHHHHHHHHHHhhccccccchhhhhhhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccC
Confidence 46666554 3455667788889999999999999999999999999999999999999997 223334489999999
Q ss_pred CchhHHHHhhcCCc--cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcch
Q psy1107 90 VGNFIFPLLSWSKI--CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNK 167 (218)
Q Consensus 90 ~G~~~~~~~~~~~~--~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~ 167 (218)
.|.....+++..++ ..++++|.|+.+++..+.+......+++...+|++.+.+..+...+++|+|++.+++..++|+.
T Consensus 82 vGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek 161 (264)
T KOG2361|consen 82 VGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEK 161 (264)
T ss_pred CCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHH
Confidence 99999999988776 8999999999999999999887778899999999998876778889999999999999999999
Q ss_pred HHHHHHHHHHhccCCeEEEEEecCCCchhhhccCCCCccCccceeccCCCC
Q psy1107 168 FSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218 (218)
Q Consensus 168 ~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (218)
...+++.+.++|||||.|++.||+.+|.++++|++++-++.++|+|+||||
T Consensus 162 ~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~ 212 (264)
T KOG2361|consen 162 MQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTR 212 (264)
T ss_pred HHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCce
Confidence 999999999999999999999999999999999999999999999999996
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=147.20 Aligned_cols=113 Identities=21% Similarity=0.332 Sum_probs=103.1
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+|||+|||||.++..+++..+.++++++|+|+.|++.++++....+ .++.|+++|+.+ +++++++||+|.+.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~----LPf~D~sFD~vt~~ 126 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAEN----LPFPDNSFDAVTIS 126 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhh----CCCCCCccCEEEee
Confidence 7899999999999999999998777899999999999999999977544 459999999988 78999999999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchhh
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQ 197 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~ 197 (218)
+.+++++ ++..+|++++|+|||||.+++.++.....+.
T Consensus 127 fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~ 164 (238)
T COG2226 127 FGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPV 164 (238)
T ss_pred ehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchh
Confidence 9999995 8999999999999999999999988776543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-20 Score=143.43 Aligned_cols=128 Identities=20% Similarity=0.327 Sum_probs=89.2
Q ss_pred CCcccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCC
Q psy1107 61 KDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVT 138 (218)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~ 138 (218)
.+..|.. .+... ....++.+|||+|||+|..+..+++. .+..+|+++|+|+.+++.++++....+ .++.++++|+.
T Consensus 31 ~~~~wr~-~~~~~-~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~ 108 (233)
T PF01209_consen 31 QDRRWRR-KLIKL-LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAE 108 (233)
T ss_dssp ------S-HHHHH-HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTT
T ss_pred HHHHHHH-HHHhc-cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHH
Confidence 3445544 22232 34567789999999999999999876 566799999999999999998865443 58999999998
Q ss_pred CcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 139 EDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 139 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
+ .++++++||+|++.+.+++++ ++.+.++++.++|||||.+++.++......
T Consensus 109 ~----lp~~d~sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~~~ 160 (233)
T PF01209_consen 109 D----LPFPDNSFDAVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPRNP 160 (233)
T ss_dssp B------S-TT-EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-SSH
T ss_pred H----hcCCCCceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCCCc
Confidence 8 678889999999999999995 788999999999999999999998877654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-20 Score=139.43 Aligned_cols=153 Identities=18% Similarity=0.245 Sum_probs=113.7
Q ss_pred ccccchhhHHHHhhhhHhhHHHHHHHhhhccCCCcccchHHHHHHh---h---hcCCCcEEEEecCCCchhHHHHhhcCC
Q psy1107 29 SRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV---N---QDVGEGVLLEVGCGVGNFIFPLLSWSK 102 (218)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~vLDiGcG~G~~~~~~~~~~~ 102 (218)
...++..+-.+|..-...+|+...... ..+.++.....++ . ..-++.+|||+|||-|.++..+|+.+
T Consensus 9 ~~~id~~e~~~F~~la~~wwd~~g~f~------~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G- 81 (243)
T COG2227 9 TQNVDYKELDKFEALASRWWDPEGEFK------PLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG- 81 (243)
T ss_pred cccCCHHHHHHHHHHHhhhcCCCCcee------eeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC-
Confidence 345666777778888888887432111 1111111111111 1 11478999999999999999999988
Q ss_pred ccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCC
Q psy1107 103 ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG 182 (218)
Q Consensus 103 ~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g 182 (218)
++|+|+|+++.+++.|+.++...+.++.+....+.+ .....++||+|+|..|++|++ ++..+++.+.+++|||
T Consensus 82 -a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~ed----l~~~~~~FDvV~cmEVlEHv~--dp~~~~~~c~~lvkP~ 154 (243)
T COG2227 82 -ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVED----LASAGGQFDVVTCMEVLEHVP--DPESFLRACAKLVKPG 154 (243)
T ss_pred -CeeEEecCChHHHHHHHHhhhhccccccchhhhHHH----HHhcCCCccEEEEhhHHHccC--CHHHHHHHHHHHcCCC
Confidence 699999999999999999988777667777766655 223336999999999999996 7888999999999999
Q ss_pred eEEEEEecCCCch
Q psy1107 183 GIILFRDYGLHDM 195 (218)
Q Consensus 183 G~li~~~~~~~~~ 195 (218)
|.++++...+...
T Consensus 155 G~lf~STinrt~k 167 (243)
T COG2227 155 GILFLSTINRTLK 167 (243)
T ss_pred cEEEEeccccCHH
Confidence 9999988665443
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.3e-18 Score=131.67 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=95.4
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCc----ccCCCceEEeccCCCcccccCCCCCc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPL----YDASKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~----~~~~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
...++.+|||+|||+|.++..+++. ++..+++|+|+|+.+++.|+++.. ....++.+++.|+.+ .++++++
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~----lp~~~~s 145 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD----LPFDDCY 145 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc----CCCCCCC
Confidence 4456789999999999999888876 455699999999999999987642 112478999999876 5677889
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
||+|++.+++++++ ++..++.++.++|||||.+++.++....
T Consensus 146 fD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 146 FDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred EeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 99999999999985 7889999999999999999999987654
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=118.09 Aligned_cols=106 Identities=19% Similarity=0.317 Sum_probs=87.1
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc--ccCCCceEEeccC-CCcccccCCCCCcccEEE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL--YDASKMNVFPCDV-TEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~--~~~~~i~~~~~d~-~~~~~~~~~~~~~~D~i~ 155 (218)
|+.+|||+|||+|.++..+++..+..+++++|+|+.+++.++++.. ....++.+++.|+ .. ... ...||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~-~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFD----PDF-LEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGG----TTT-SSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccC----ccc-CCCCCEEE
Confidence 5689999999999999999997677899999999999999999872 3347999999999 22 222 23699999
Q ss_pred ech-hhcCCCc-chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIF-VLSAIHP-NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~-~l~~~~~-~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.. .++++.+ ++...+++.+.+.|+|||++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 988 5554432 567889999999999999999864
|
... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-18 Score=123.61 Aligned_cols=109 Identities=23% Similarity=0.364 Sum_probs=92.2
Q ss_pred CCCcEEEEecCCCchhHHHHh-hcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLL-SWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~-~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+|||+|||+|.++..++ ..++..+++|+|+|+.+++.|+.+++..+ .++.|.+.|+.+.. ..++ +.||+|+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~--~~~~-~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLP--QELE-EKFDIII 78 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGC--GCSS-TTEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccc--cccC-CCeeEEE
Confidence 457899999999999999999 56777899999999999999999765444 47999999998822 1133 6899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+..++++++ +...+++.+.++|+++|.+++.++.
T Consensus 79 ~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999884 7789999999999999999998866
|
... |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=126.45 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=103.0
Q ss_pred hhHHHHHHHhhhccCCCcccchHHHHHHhhhc--CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCC
Q psy1107 46 KYWDLFYKRNETKFFKDRNWTVNEFHEFVNQD--VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNP 123 (218)
Q Consensus 46 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~ 123 (218)
++|+..|......|.. .-..+.+...+... .++.+|||+|||.|..+..++.++ ..|+|+|+|+.+++.+....
T Consensus 1 ~~Wd~ry~~~~~~w~~--~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~ 76 (213)
T TIGR03840 1 EFWHERWQEGQIGFHQ--SEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAEN 76 (213)
T ss_pred ChHHHHHhcCCCCCcc--CCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHc
Confidence 3799999776555421 22233343433222 466799999999999999999877 58999999999999864321
Q ss_pred cc-------------cCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 124 LY-------------DASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 124 ~~-------------~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.. ...++.+.++|+.+.. ....+.||.|+...+++|++++....++..+.++|+|||.+++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 77 GLTPTVTQQGEFTRYRAGNIEIFCGDFFALT---AADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCCcceeccccceeeecCceEEEEccCCCCC---cccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 11 1346889999997732 1113479999999999999999999999999999999998777655
Q ss_pred C
Q psy1107 191 G 191 (218)
Q Consensus 191 ~ 191 (218)
.
T Consensus 154 ~ 154 (213)
T TIGR03840 154 D 154 (213)
T ss_pred E
Confidence 4
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=130.97 Aligned_cols=147 Identities=16% Similarity=0.237 Sum_probs=109.8
Q ss_pred hHHHHhhhhHhhHHHHHHHhhhccCCCcccchHHHHHHh--hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCH
Q psy1107 36 VAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV--NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISP 113 (218)
Q Consensus 36 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~ 113 (218)
+..+|.......|+..+...--. ... .+....++ ....++.+|||+|||+|..+..++... ..+|+++|+|+
T Consensus 12 ~~~~y~~~~~~~~e~~~g~~~~~---~gg--~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~ 85 (263)
T PTZ00098 12 ENNQYSDEGIKAYEFIFGEDYIS---SGG--IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICE 85 (263)
T ss_pred hccccccccchhHHHHhCCCCCC---CCc--hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCH
Confidence 45556666666777655432110 100 11222232 345678899999999999998887654 46999999999
Q ss_pred HHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 114 RAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 114 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
.+++.++.+... ..++.+...|+.. .++++++||+|++..++.|++.++...+++++.++|||||.|++.++...
T Consensus 86 ~~~~~a~~~~~~-~~~i~~~~~D~~~----~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 86 KMVNIAKLRNSD-KNKIEFEANDILK----KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred HHHHHHHHHcCc-CCceEEEECCccc----CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 999999987553 3578999999876 46677799999999888888766889999999999999999999987543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-18 Score=112.58 Aligned_cols=95 Identities=22% Similarity=0.359 Sum_probs=81.1
Q ss_pred EEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCC
Q psy1107 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAI 163 (218)
Q Consensus 84 LDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~ 163 (218)
||+|||+|..+..+++. +..+++++|+++.+++.++++... ..+.+...|+.+ .++++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~----l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAED----LPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTS----SSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHh----Cccccccccccccccceeec
Confidence 89999999999999988 457999999999999999987653 345588899887 58888899999999999999
Q ss_pred CcchHHHHHHHHHHhccCCeEEEE
Q psy1107 164 HPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 164 ~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
+++..+++++.++|||||.+++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 6899999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=133.41 Aligned_cols=107 Identities=15% Similarity=0.205 Sum_probs=89.9
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
++.+|||||||+|.++..++..+ .+|+|+|+++.+++.|+.+....+ .++.+++.|+.+ .++..++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~----l~~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK----LADEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHH----hhhccCCCCEEEE
Confidence 56799999999999999888754 699999999999999997754332 478899988765 3445568999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
..+++|++ +...+++.+.++|||||.+++....+.
T Consensus 205 ~~vLeHv~--d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 205 LEVIEHVA--NPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred hhHHHhcC--CHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 99999995 778999999999999999999876544
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-17 Score=133.62 Aligned_cols=108 Identities=15% Similarity=0.145 Sum_probs=92.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+|||||||+|..+..++... ..+|+|+|+|+.+++.++++....+ .++.+.+.|+.+ .++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~----~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN----QPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc----CCCCCCCccEEE
Confidence 567899999999999999998865 4699999999999999988754433 478999999877 466778999999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
+..+++|++ +...++.++.++|||||.|++.++..
T Consensus 192 s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 192 SMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred ECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 999999995 67899999999999999999987643
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=124.39 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=86.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.++++....+.++.+...|+.. .+++ ++||+|++.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~----~~~~-~~fD~I~~~ 101 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINA----AALN-EDYDFIFST 101 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchh----cccc-CCCCEEEEe
Confidence 356799999999999999999865 599999999999999987655444346677777644 2233 479999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+++++++++...+++.+.++|+|||++++..+
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 102 VVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 999999877888999999999999999766543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-17 Score=121.77 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=86.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|..+..+++.+ .+|+++|+|+.+++.++++....+ .++.+.+.|+.+ ..++ ++||+|++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~----~~~~-~~fD~I~~ 101 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN----LTFD-GEYDFILS 101 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh----CCcC-CCcCEEEE
Confidence 456899999999999999999875 599999999999999988755433 457888888765 2333 47999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
..+++++++++...++..+.++|+|||.+++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999988778899999999999999996553
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.9e-18 Score=112.98 Aligned_cols=97 Identities=21% Similarity=0.401 Sum_probs=80.5
Q ss_pred EEEecCCCchhHHHHhhcC---CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec-h
Q psy1107 83 LLEVGCGVGNFIFPLLSWS---KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI-F 158 (218)
Q Consensus 83 vLDiGcG~G~~~~~~~~~~---~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~-~ 158 (218)
|||+|||+|..+..++... |..+++++|+|+.+++.++++....+.++++++.|+.+ .+...++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~----l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARD----LPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC----HHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhH----CcccCCCeeEEEEcCC
Confidence 7999999999999998774 44699999999999999999876655689999999977 34456699999995 4
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCe
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGG 183 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG 183 (218)
+++|++++....+++++.++|+|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 5999998899999999999999998
|
|
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-16 Score=118.24 Aligned_cols=115 Identities=18% Similarity=0.261 Sum_probs=99.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCc------cEEEEEeCCHHHHHHHHhCCcccC----CCceEEeccCCCccccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKI------CYIHACDISPRAVNFFKLNPLYDA----SKMNVFPCDVTEDDILN 144 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~------~~v~~~D~s~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~ 144 (218)
..+.+..++||++||+|..+..+.+..+. .+|+++|+|+.+++.+++++...+ ..+.++++|+.+ +
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~----L 171 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED----L 171 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc----C
Confidence 45566799999999999999999877443 689999999999999999874433 348899999988 7
Q ss_pred CCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 145 QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
++++.+||+.+..+.+.+++ ++.+.+++++|+|||||+|++.++....+
T Consensus 172 pFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~~ 220 (296)
T KOG1540|consen 172 PFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVEN 220 (296)
T ss_pred CCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEcccccc
Confidence 79999999999999999996 88999999999999999999999887663
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.9e-17 Score=124.51 Aligned_cols=108 Identities=17% Similarity=0.321 Sum_probs=90.9
Q ss_pred cCCCcEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
..++.+|||+|||+|..+..++.. .|..+++++|+|+.+++.|+++....+ .++.++++|+.+ .++ ..+|
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~----~~~--~~~D 127 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD----IAI--ENAS 127 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh----CCC--CCCC
Confidence 356789999999999999888773 577899999999999999998865433 478999998865 222 3589
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|++..+++++++++...+++++.+.|+|||.|++.+.
T Consensus 128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999999999877788999999999999999999873
|
|
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-17 Score=120.45 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=110.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-CCCce-EEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-ASKMN-VFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-~~~i~-~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
......+||+|||+|..-..+- ..|..+|+++|+++.+.+.+.+.+... +.++. |+..+..+ ...++++++|+|
T Consensus 74 k~~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~---l~~l~d~s~DtV 149 (252)
T KOG4300|consen 74 KSGKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGEN---LPQLADGSYDTV 149 (252)
T ss_pred ccCccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhc---CcccccCCeeeE
Confidence 3445678999999998875553 346679999999999999999886554 35666 88888777 234788999999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchhhhccCCCCccCccceeccCCCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (218)
++..+++.. +++.+.+++..++|+|||.+++.+++......+.+.-.+...+.|..-.|||+
T Consensus 150 V~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ 211 (252)
T KOG4300|consen 150 VCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCV 211 (252)
T ss_pred EEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceE
Confidence 999999977 68999999999999999999999998888777766666677777788888874
|
|
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-17 Score=123.22 Aligned_cols=154 Identities=18% Similarity=0.255 Sum_probs=105.7
Q ss_pred ccccchhhHHHHhhhhHhhHHHHHHHhh-hccCCCc-ccchHHHHHHh-hhcCC-----CcEEEEecCCCchhHHHHhhc
Q psy1107 29 SRLVSKHVAEEIEQNKKKYWDLFYKRNE-TKFFKDR-NWTVNEFHEFV-NQDVG-----EGVLLEVGCGVGNFIFPLLSW 100 (218)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~-~~~~~~~~~~~-~~~~~-----~~~vLDiGcG~G~~~~~~~~~ 100 (218)
...++..+..++.......|+.--.... ...-..| .|+...+..-. .+.++ +++|||+|||.|.++..+++.
T Consensus 31 ~~si~~~eV~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArl 110 (282)
T KOG1270|consen 31 TTSIDVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARL 110 (282)
T ss_pred eecccHHHHHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhh
Confidence 3445556667777777788885322211 1110111 11222222221 11222 478999999999999999998
Q ss_pred CCccEEEEEeCCHHHHHHHHhCCcccC---C----CceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHH
Q psy1107 101 SKICYIHACDISPRAVNFFKLNPLYDA---S----KMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVK 173 (218)
Q Consensus 101 ~~~~~v~~~D~s~~~~~~~~~~~~~~~---~----~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~ 173 (218)
+ +.|+|+|++..+++.|+......+ . ++.+.+.++.. . .+.||.|+|..+++|+ .++..+++
T Consensus 111 g--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~------~-~~~fDaVvcsevleHV--~dp~~~l~ 179 (282)
T KOG1270|consen 111 G--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG------L-TGKFDAVVCSEVLEHV--KDPQEFLN 179 (282)
T ss_pred C--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh------c-ccccceeeeHHHHHHH--hCHHHHHH
Confidence 8 599999999999999999855444 2 24455555544 1 2259999999999999 68999999
Q ss_pred HHHHhccCCeEEEEEecCCC
Q psy1107 174 NLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 174 ~~~~~Lk~gG~li~~~~~~~ 193 (218)
.+.++|||||.+++.+..+.
T Consensus 180 ~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 180 CLSALLKPNGRLFITTINRT 199 (282)
T ss_pred HHHHHhCCCCceEeeehhhh
Confidence 99999999999999885443
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=117.62 Aligned_cols=107 Identities=21% Similarity=0.301 Sum_probs=87.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.++||+|||.|..+..+++.+ ..|+++|.|+.+++.+++.+...+-.++..+.|+.+ ..++ +.||+|++
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~----~~~~-~~yD~I~s 100 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLND----FDFP-EEYDFIVS 100 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCC----BS-T-TTEEEEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchh----cccc-CCcCEEEE
Confidence 3467899999999999999999987 589999999999999888766555678899999877 3343 47999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
..++++++++....++..+.+.++|||++++..+
T Consensus 101 t~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 101 TVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp ESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 9999999999999999999999999999888543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-16 Score=118.36 Aligned_cols=136 Identities=17% Similarity=0.152 Sum_probs=99.9
Q ss_pred HhhHHHHHHHhhhccCCCcccchHHHHHHhh--hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC
Q psy1107 45 KKYWDLFYKRNETKFFKDRNWTVNEFHEFVN--QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 45 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~ 122 (218)
.++|+..|......|.. .-..+.+...+. ...++.+|||+|||.|..+..++..+ .+|+|+|+|+.+++.+...
T Consensus 3 ~~~Wd~rw~~~~~~~~~--~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~ 78 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQ--EEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAE 78 (218)
T ss_pred HhHHHHHHcCCCCCCCC--CCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHH
Confidence 35799999776544421 122333333321 23456799999999999999999876 5999999999999986432
Q ss_pred Cc-------------ccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 123 PL-------------YDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 123 ~~-------------~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
.. ....++.+.++|+.+.. ....+.||.|+...++++++++....++..+.++|+|||.+++
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~---~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 79 NGLTPQTRQSGEFEHYQAGEITIYCGDFFALT---AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred cCCCccccccccccccccCceEEEECcccCCC---cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 11 11356888999987732 1122479999999999999999999999999999999986555
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=125.14 Aligned_cols=109 Identities=20% Similarity=0.292 Sum_probs=90.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+|||+|||+|..+..++..+ .+|+++|+|+.+++.|+++....+ .++.++++|+.+. ...+.++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l---~~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI---AQHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH---hhhcCCCCCEEE
Confidence 456799999999999999999875 589999999999999998765443 4688999888662 234456899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+..+++|++ ++..++..+.++|||||.+++..+...
T Consensus 118 ~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 118 FHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred ehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 999999994 677899999999999999998766544
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=121.82 Aligned_cols=112 Identities=16% Similarity=0.234 Sum_probs=92.7
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.++.+....+ .++.+++.|+.. .+++.++||+
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~ 117 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAME----LPFDDNSFDY 117 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhc----CCCCCCCccE
Confidence 3456789999999999999999876 456799999999999999998754333 578889998876 3455678999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
|++..++++++ +...++.++.++|+|||.+++.+....
T Consensus 118 V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 118 VTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred EEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 99999988885 678899999999999999999876543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=123.73 Aligned_cols=101 Identities=20% Similarity=0.195 Sum_probs=86.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++...|..+++|+|+|+.+++.+++. ++.+.++|+.+ . .+.++||+|++
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~----~-~~~~~fD~v~~ 95 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRD----W-KPKPDTDVVVS 95 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhh----C-CCCCCceEEEE
Confidence 3567899999999999999999887778999999999999999763 57788888764 1 23468999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
..+++|++ +...++.++.++|||||.+++...
T Consensus 96 ~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 96 NAALQWVP--EHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred ehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEcC
Confidence 99999995 678899999999999999998653
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=123.26 Aligned_cols=142 Identities=15% Similarity=0.174 Sum_probs=100.2
Q ss_pred hhHHHHH---HHhhhccCCCcccchH----HHHHHhhh--cCCCcEEEEecCCCch----hHHHHhhcCC-----ccEEE
Q psy1107 46 KYWDLFY---KRNETKFFKDRNWTVN----EFHEFVNQ--DVGEGVLLEVGCGVGN----FIFPLLSWSK-----ICYIH 107 (218)
Q Consensus 46 ~~w~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~vLDiGcG~G~----~~~~~~~~~~-----~~~v~ 107 (218)
+.|+... ..+.+.|+++...... .++.++.. ..++.+|+|+|||+|. ++..+++..+ +.+|+
T Consensus 57 ~e~~~l~~~lti~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~ 136 (264)
T smart00138 57 EELAELLDLMTTNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKIL 136 (264)
T ss_pred HHHHHHHHHhhcCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEE
Confidence 4455433 3345677776532221 12222211 2356799999999997 3444444433 46999
Q ss_pred EEeCCHHHHHHHHhCCcc----------------------------cCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 108 ACDISPRAVNFFKLNPLY----------------------------DASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 108 ~~D~s~~~~~~~~~~~~~----------------------------~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
|+|+|+.+++.|++..-. ...++.|.+.|+.+ .+.+.++||+|+|..+
T Consensus 137 g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~----~~~~~~~fD~I~crnv 212 (264)
T smart00138 137 ATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA----ESPPLGDFDLIFCRNV 212 (264)
T ss_pred EEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC----CCCccCCCCEEEechh
Confidence 999999999999986310 01368888898877 3345678999999999
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
++|+++.....+++.+.+.|+|||+|++....
T Consensus 213 l~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 213 LIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 99998778889999999999999999997633
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-17 Score=112.06 Aligned_cols=98 Identities=26% Similarity=0.441 Sum_probs=64.4
Q ss_pred EEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEechhhcC
Q psy1107 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSA 162 (218)
Q Consensus 84 LDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~ 162 (218)
||+|||+|.++..+++..|..+++++|+|+.+++.++++..... .+......+..+ .......++||+|++..+++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLD--LFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS-----CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCC--hhhcccccccceehhhhhHhh
Confidence 79999999999999998888899999999999988887755433 233344333332 112222258999999999999
Q ss_pred CCcchHHHHHHHHHHhccCCeEE
Q psy1107 163 IHPNKFSTVVKNLFIMLKSGGII 185 (218)
Q Consensus 163 ~~~~~~~~~l~~~~~~Lk~gG~l 185 (218)
+ .++..+++.+.++|+|||.|
T Consensus 79 l--~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L--EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred h--hhHHHHHHHHHHHcCCCCCC
Confidence 9 58889999999999999976
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-16 Score=113.45 Aligned_cols=137 Identities=21% Similarity=0.263 Sum_probs=98.1
Q ss_pred hhHHHHHHHhhhccCCCcccchH-HHHHHh---hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHh
Q psy1107 46 KYWDLFYKRNETKFFKDRNWTVN-EFHEFV---NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKL 121 (218)
Q Consensus 46 ~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~ 121 (218)
+.|+. +....++|.....|..+ ....++ ....+..++||+|||.|.++..++..+ -+++++|+|+.+++.|++
T Consensus 7 ~~l~~-~la~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~ 83 (201)
T PF05401_consen 7 QLLNR-ELANDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARE 83 (201)
T ss_dssp HHHHH-HHTSSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHH
T ss_pred HHHHH-HhCCCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHH
Confidence 34443 33445566444455544 222222 344556899999999999999999987 389999999999999999
Q ss_pred CCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCc-chHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 122 NPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHP-NKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 122 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~-~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+.... .++.+.+.|+.. ..|.++||+|++..+++++.+ ++...++..+...|.|||.|++.++.
T Consensus 84 Rl~~~-~~V~~~~~dvp~-----~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 84 RLAGL-PHVEWIQADVPE-----FWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp HTTT--SSEEEEES-TTT--------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred hcCCC-CCeEEEECcCCC-----CCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 87644 589999998855 456789999999999999975 67889999999999999999998864
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=122.21 Aligned_cols=108 Identities=13% Similarity=0.204 Sum_probs=91.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
.++.+|||+|||+|..+..+++. .|.++++++|+|+.+++.|+++....+ .++.+++.|+.+ .+++ ++|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~--~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH----VEIK--NASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh----CCCC--CCCE
Confidence 46779999999999999999875 367899999999999999998755432 468899998876 2232 5899
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|++..+++++++++...+++++.++|+|||.+++.+..
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 99999999998777889999999999999999998754
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-16 Score=116.34 Aligned_cols=109 Identities=21% Similarity=0.219 Sum_probs=89.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||+|..+..++...+..+++|+|+|+.+++.|+.+.. ++.+.+.|+.+ ++++++||+|
T Consensus 39 ~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~-----~~~~~sfD~V 109 (204)
T TIGR03587 39 NRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFD-----PFKDNFFDLV 109 (204)
T ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccC-----CCCCCCEEEE
Confidence 34557789999999999999999887666799999999999999987642 46677777654 4566799999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
++..+++|+++++...+++++.+++ ++++++.++....
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 9999999998888899999999987 5688887764433
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-16 Score=131.64 Aligned_cols=110 Identities=23% Similarity=0.292 Sum_probs=93.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+.+......++.|.+.|+.. .++++++||+|++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~I~s 338 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTK----KTYPDNSFDVIYS 338 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCccc----CCCCCCCEEEEEE
Confidence 4567899999999999998888764 4699999999999999988765444578999999876 4556678999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
..+++|++ ++..++.++.++|||||.+++.++...
T Consensus 339 ~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 339 RDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred CCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 99999995 788999999999999999999886543
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-16 Score=124.16 Aligned_cols=104 Identities=18% Similarity=0.266 Sum_probs=87.3
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
++.+|||+|||+|..+..++..+ .+|+++|+|+.+++.+++++...+.++.+...|+... .+ .++||+|++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~----~~-~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSA----SI-QEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcc----cc-cCCccEEEEcc
Confidence 45699999999999999998865 5999999999999999887655445788888887652 22 45899999999
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++++++++....+++.+.++|+|||++++..
T Consensus 193 vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 193 VLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999987788899999999999999976643
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=7e-16 Score=114.21 Aligned_cols=104 Identities=20% Similarity=0.170 Sum_probs=85.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
+++.+|||+|||+|..+..++...+..+|+++|+++.+++.++++....+ .++++.++|+.+. .. .++||+|++
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~----~~-~~~fDlV~~ 118 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF----GQ-EEKFDVVTS 118 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC----CC-CCCccEEEE
Confidence 45789999999999999999887777899999999999999998866554 4589999998762 22 558999998
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
.. + .++..+++.+.++|+|||.+++.....
T Consensus 119 ~~----~--~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 119 RA----V--ASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred cc----c--cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 64 2 356789999999999999999987443
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-15 Score=117.01 Aligned_cols=106 Identities=17% Similarity=0.263 Sum_probs=88.6
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++.+.. ...+++.|+.. .++++++||+|++..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~----~~~~~~~fD~V~s~~ 111 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDA----ADHYLAGDIES----LPLATATFDLAWSNL 111 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC----CCCEEEcCccc----CcCCCCcEEEEEECc
Confidence 56799999999999998887654 599999999999999987643 35678888866 456677899999999
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
++++++ ++..++.++.++|+|||.+++..++.....
T Consensus 112 ~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 147 (251)
T PRK10258 112 AVQWCG--NLSTALRELYRVVRPGGVVAFTTLVQGSLP 147 (251)
T ss_pred hhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCCCCchH
Confidence 998874 788999999999999999999987765433
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=117.63 Aligned_cols=108 Identities=22% Similarity=0.301 Sum_probs=92.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..++..+++++|+++.+++.++.... .++.++.+|+.+ .+++.++||+|++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~----~~~~~~~fD~vi~~ 105 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEK----LPLEDSSFDLIVSN 105 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhh----CCCCCCceeEEEEh
Confidence 34579999999999999999998887789999999999999988754 378889998876 34566789999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.+++++. +...++..+.++|+|||.+++..+....
T Consensus 106 ~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 106 LALQWCD--DLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred hhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 9999884 6788999999999999999998765444
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9e-16 Score=130.36 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=92.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|..+..++...|+.+++|+|+|+.+++.++++....+.++.++++|+.+. ...+++++||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dL--p~~fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINL--SSSFEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhC--ccccCCCCEEEEEE
Confidence 3467899999999999999998888888999999999999999987554445678888887651 12366778999999
Q ss_pred chhhcCCC-----------cchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIH-----------PNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~-----------~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
..+++++. +++...+++.+.++|||||.+++.+.
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 88887642 24678999999999999999999874
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=110.79 Aligned_cols=100 Identities=24% Similarity=0.353 Sum_probs=80.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||.|.++..++..+. +++++|+++.+++. .+......+... ...+.++||+|+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~---------~~~~~~~~~~~~----~~~~~~~fD~i~~ 84 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK---------RNVVFDNFDAQD----PPFPDGSFDLIIC 84 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH---------TTSEEEEEECHT----HHCHSSSEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh---------hhhhhhhhhhhh----hhccccchhhHhh
Confidence 56788999999999999999977764 99999999999888 122222222212 2345569999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
..+++|++ ++..+++.+.++|||||++++.+....
T Consensus 85 ~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 85 NDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp ESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99999996 799999999999999999999987654
|
... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.1e-15 Score=112.82 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=81.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|..+..++... ..+++|+|+|+.+++.++... .++++|+.+ .++++++||+|++.
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~----lp~~d~sfD~v~~~ 117 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-------DKVVGSFEA----LPFRDKSFDVVMSS 117 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-------ceEEechhh----CCCCCCCEEEEEec
Confidence 457899999999999999998875 359999999999999998641 346677766 57788899999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
+++++++ ++...++++.++|||. +.+.+++.
T Consensus 118 ~~l~~~~--d~~~~l~e~~RvLkp~--~~ile~~~ 148 (226)
T PRK05785 118 FALHASD--NIEKVIAEFTRVSRKQ--VGFIAMGK 148 (226)
T ss_pred ChhhccC--CHHHHHHHHHHHhcCc--eEEEEeCC
Confidence 9999884 7889999999999994 33444443
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=118.05 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=86.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++...+..+++++|+|+.+++.++++. .++.+...|+... .+..+||+|++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~-----~~~~~fD~v~~ 99 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASW-----QPPQALDLIFA 99 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhcc-----CCCCCccEEEE
Confidence 35678999999999999999998877789999999999999998764 3578888887641 23358999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..++++++ +...++.++.++|+|||.+++..
T Consensus 100 ~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 100 NASLQWLP--DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ccChhhCC--CHHHHHHHHHHhcCCCcEEEEEC
Confidence 99999985 67889999999999999998854
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.8e-16 Score=122.92 Aligned_cols=105 Identities=18% Similarity=0.229 Sum_probs=85.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc--ccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL--YDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~--~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+|||||||+|.++..++..++. .|+|+|+|+.++..++.... ....++.+..+|+.+ .+. .++||+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~----lp~-~~~FD~V~ 194 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ----LPA-LKAFDTVF 194 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH----CCC-cCCcCEEE
Confidence 35689999999999999999988764 79999999998875443211 113478999998876 334 56899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|..+++|.. ++..++.++++.|+|||.+++.+.
T Consensus 195 s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 195 SMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred ECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999999984 788899999999999999998654
|
|
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.8e-16 Score=109.57 Aligned_cols=144 Identities=22% Similarity=0.361 Sum_probs=102.6
Q ss_pred hhhHhhHHHHHHHhhhccCCCc----ccchHHH--------HHHh--hhcCCC-cEEEEecCCCchhHHHHhhcCCccEE
Q psy1107 42 QNKKKYWDLFYKRNETKFFKDR----NWTVNEF--------HEFV--NQDVGE-GVLLEVGCGVGNFIFPLLSWSKICYI 106 (218)
Q Consensus 42 ~~~~~~w~~~~~~~~~~~~~~~----~~~~~~~--------~~~~--~~~~~~-~~vLDiGcG~G~~~~~~~~~~~~~~v 106 (218)
.+.++||+..|.....+|.... -|..... ...+ ....+. .+|||+|||.|.++..+++.+-....
T Consensus 15 LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L 94 (227)
T KOG1271|consen 15 LGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKL 94 (227)
T ss_pred cchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCc
Confidence 4678899999999888775221 2222111 1111 112333 39999999999999999988644469
Q ss_pred EEEeCCHHHHHHHHhCCcccC-C-CceEEeccCCCcccccCCCCCcccEEEechhhcCCC--c----chHHHHHHHHHHh
Q psy1107 107 HACDISPRAVNFFKLNPLYDA-S-KMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIH--P----NKFSTVVKNLFIM 178 (218)
Q Consensus 107 ~~~D~s~~~~~~~~~~~~~~~-~-~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~--~----~~~~~~l~~~~~~ 178 (218)
+|+|+|+.+++.|+..++..+ . .|.|.+.|++++ .+..+.||+|+--..+..++ | ..+...+..+.++
T Consensus 95 ~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~----~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~l 170 (227)
T KOG1271|consen 95 TGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP----DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKL 170 (227)
T ss_pred cccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC----cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhc
Confidence 999999999999998876655 3 499999999984 34455788887755554443 2 1235677888999
Q ss_pred ccCCeEEEEEe
Q psy1107 179 LKSGGIILFRD 189 (218)
Q Consensus 179 Lk~gG~li~~~ 189 (218)
|+|||+|++..
T Consensus 171 l~~~gifvItS 181 (227)
T KOG1271|consen 171 LSPGGIFVITS 181 (227)
T ss_pred cCCCcEEEEEe
Confidence 99999999854
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-15 Score=111.89 Aligned_cols=144 Identities=16% Similarity=0.143 Sum_probs=108.8
Q ss_pred hhHhhHHHHHHHhhhccCCCcccchHHHHHHh--hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHH
Q psy1107 43 NKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV--NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFK 120 (218)
Q Consensus 43 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~ 120 (218)
...++|+..|..+...|.... ....+.+.+ ....++.+||.+|||.|..+..++..+ .+|+|+|+|+.+++.+.
T Consensus 7 ~~~~fW~~rw~~~~~~f~~~~--pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~ 82 (226)
T PRK13256 7 NNNQYWLDRWQNDDVGFCQES--PNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFF 82 (226)
T ss_pred CCHHHHHHHHhcCCCCCccCC--CCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHH
Confidence 345689999988877774332 233333332 122356799999999999999999987 48999999999999986
Q ss_pred hCC-------------cccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 121 LNP-------------LYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 121 ~~~-------------~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
+.. ...+.++.+.++|+.+... ..-..+.||+|+-...+++++|+...++.+.+.++|+|||.+++
T Consensus 83 ~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~-~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 83 SQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK-IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred HHcCCCcceecccccceeccCceEEEEccCcCCCc-cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 521 1223578999999987321 01122579999999999999999999999999999999999988
Q ss_pred EecC
Q psy1107 188 RDYG 191 (218)
Q Consensus 188 ~~~~ 191 (218)
..+.
T Consensus 162 l~~~ 165 (226)
T PRK13256 162 LVME 165 (226)
T ss_pred EEEe
Confidence 7653
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-15 Score=111.94 Aligned_cols=136 Identities=23% Similarity=0.323 Sum_probs=100.5
Q ss_pred HhhHHHHHHHhhhccCCCcccchHHHHHHhh--hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHh-
Q psy1107 45 KKYWDLFYKRNETKFFKDRNWTVNEFHEFVN--QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKL- 121 (218)
Q Consensus 45 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~- 121 (218)
.++|+..|..+..+| +..-..+.+..++. ...++.+||.+|||.|..+..+++.+ .+|+|+|+|+.+++.+.+
T Consensus 3 ~~~W~~~w~~~~~~w--~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e 78 (218)
T PF05724_consen 3 PEFWEERWQEGQTPW--DQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEE 78 (218)
T ss_dssp HHHHHHHHHTT--TT----TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCC--CCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHH
Confidence 468999998887777 33334445555542 25667899999999999999999887 599999999999999832
Q ss_pred CCc------------ccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 122 NPL------------YDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 122 ~~~------------~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
+.. ....++.+.++|+.+. ..-..++||+|+-...++.++|+......+.+.++|+|||.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l---~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 79 NNLEPTVTSVGGFKRYQAGRITIYCGDFFEL---PPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp CTTEEECTTCTTEEEETTSSEEEEES-TTTG---GGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred hccCCCcccccceeeecCCceEEEEcccccC---ChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 211 0124678999999873 22222579999999999999999999999999999999999443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=111.18 Aligned_cols=106 Identities=23% Similarity=0.329 Sum_probs=86.0
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC-CceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS-KMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
+..+|||+|||+|..+..++..+|..+++++|+++.+++.++.+...++. ++.++..|+.+ ..+.++||+|+++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-----~~~~~~fD~Iv~N 105 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-----ALPDGKFDLIVSN 105 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-----TCCTTCEEEEEE-
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-----cccccceeEEEEc
Confidence 67899999999999999999999888899999999999999998776653 38888988865 3446799999998
Q ss_pred hhhcCCCc---chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHP---NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~---~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
-.++.-.. +....++..+.++|+|||.|++..
T Consensus 106 PP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 106 PPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp --SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 76554432 246788999999999999997654
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=118.97 Aligned_cols=110 Identities=20% Similarity=0.207 Sum_probs=90.1
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|..+..++.. ++..+++++|+++.+++.++++....+ .++.+...|+.+ .++++++||+
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~----l~~~~~~fD~ 149 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEA----LPVADNSVDV 149 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhh----CCCCCCceeE
Confidence 4567889999999999988776654 455689999999999999998754433 478888888866 3556678999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|++..++++.+ +...+++++.++|||||.|++.++.
T Consensus 150 Vi~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 150 IISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred EEEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEee
Confidence 99999988775 6678999999999999999997753
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=115.82 Aligned_cols=104 Identities=22% Similarity=0.340 Sum_probs=88.1
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.+|||+|||+|.++..+++.++..+++++|+|+.+++.++.+....+ .++.+...|+... +++ ++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~----~~~-~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD----PFP-DTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC----CCC-CCCCEeehHH
Confidence 37999999999999999988777899999999999999998765432 5788999988652 233 4899999999
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+++|++ ++..+++.+.++|+|||.+++.++.
T Consensus 76 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 76 VIHHIK--DKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HHHhCC--CHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 999995 6889999999999999999998754
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-15 Score=115.08 Aligned_cols=110 Identities=19% Similarity=0.167 Sum_probs=92.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||+|||+|.++..++... +..+++++|+++.+++.++.+......++.+...|+.. .+++.++||+
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~ 90 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADG----LPFPDGSFDA 90 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccccc----CCCCCCCceE
Confidence 345677899999999999999998875 66799999999999999988743344678899988876 3455678999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|++..++++++ ++..+++.+.++|+|||.+++.+.
T Consensus 91 v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 91 VRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred EEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEec
Confidence 99999999985 788899999999999999998764
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-15 Score=118.78 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=82.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC--CcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN--PLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~--~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++..++. .|+|+|+|+.++..+... ......++.+..+++.+ .+.. .+||+|
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~----lp~~-~~FD~V 192 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ----LHEL-YAFDTV 192 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH----CCCC-CCcCEE
Confidence 345789999999999999888887764 899999999988764332 11122467777777755 2222 379999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
++..+++|.+ ++..++.++++.|+|||.|++.+.
T Consensus 193 ~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 193 FSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred EEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEE
Confidence 9999999994 778899999999999999998754
|
Known examples to date are restricted to the proteobacteria. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=116.72 Aligned_cols=112 Identities=15% Similarity=0.244 Sum_probs=86.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||||||-|.++..+++.+ +++|+|+.+|+...+.+++.+...+ .++.+...|..+. +. +||
T Consensus 58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~------~~-~fD 129 (273)
T PF02353_consen 58 LGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL------PG-KFD 129 (273)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----------S-S
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc------CC-CCC
Confidence 556789999999999999999999985 4799999999999999998766544 5688888887652 22 899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.|++..+++|+.+.+...+++++.++|+|||.+++-.....+
T Consensus 130 ~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 130 RIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp EEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred EEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 999999999998889999999999999999999986544333
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.1e-15 Score=118.66 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=88.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|..+..+++..+..+++++|+|+.+++.++++.. ..++.+..+|+.+ .+++.++||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~----lp~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAED----LPFPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHh----CCCCCCceeEEEEc
Confidence 45679999999999999888876655799999999999999998753 2467888888876 45667789999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.++++++ +...+++++.++|+|||.+++.+
T Consensus 186 ~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 186 GSIEYWP--DPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred ChhhhCC--CHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999885 56789999999999999998865
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-15 Score=113.68 Aligned_cols=110 Identities=21% Similarity=0.298 Sum_probs=85.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCccc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
..++.+|||+|||+|.++..++.. ++..+++|+|+|+.+++.++++... .++.+...+... .+.++++||
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~----l~~~~~~fD 131 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--PGVTFRQAVSDE----LVAEGERFD 131 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--CCCeEEEEeccc----ccccCCCcc
Confidence 356789999999999998887653 4556999999999999999887543 245565555433 223456899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+|++..+++|+++.+...++.++.++++ |.+++.++.+..
T Consensus 132 ~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~ 171 (232)
T PRK06202 132 VVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSR 171 (232)
T ss_pred EEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCH
Confidence 9999999999986566789999999998 667777777654
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=112.87 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=87.1
Q ss_pred CCcEEEEecCCCchhHHHHh--hcCCccEEEEEeCCHHHHHHHHhCCcc-c--CCCceEEeccCCCcccccCCCCCcccE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLL--SWSKICYIHACDISPRAVNFFKLNPLY-D--ASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~--~~~~~~~v~~~D~s~~~~~~~~~~~~~-~--~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
++.+|+|||||.|.++..+. ...|+.+++++|+++.+++.|++.+.. . ..++.|..+|+.+. ....+.||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~----~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV----TESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc----ccccCCcCE
Confidence 77899999999886644433 457888999999999999999998743 2 25799999998762 112357999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++. +++++...+...+++.+.+.|+|||.|++..
T Consensus 199 VF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 199 VFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999 8888866789999999999999999999976
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.61 E-value=6e-15 Score=109.00 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=81.3
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+|||+|||+|..+..++...+..+++++|.|+.+++.++++....+ .++.++++|+.+. . ..++||+|++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~----~-~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF----Q-HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc----c-ccCCccEEEeh
Confidence 4789999999999999999877777899999999999999887755444 4689999998662 1 24589999986
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
. ++ +...+++.+.++|+|||.+++..
T Consensus 117 ~-~~-----~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 117 A-LA-----SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred h-hh-----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 5 22 45567888899999999999875
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-15 Score=109.38 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=88.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..-+..+|.|+|||+|..+..++++.|.+.++|+|.|+.|++.|+.+. .+++|...|+.+ ..+....|+++
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~-----w~p~~~~dllf 97 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRT-----WKPEQPTDLLF 97 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhh-----cCCCCccchhh
Confidence 345678999999999999999999999999999999999999998763 578899998865 34455799999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
++.+++++| +-..++.++...|.|||.|.+-
T Consensus 98 aNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 98 ANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred hhhhhhhcc--ccHHHHHHHHHhhCCCceEEEE
Confidence 999999997 5567889999999999988873
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=116.58 Aligned_cols=109 Identities=19% Similarity=0.307 Sum_probs=91.6
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..+..+|||||||+|.++..+++.+|..+++++|. +.+++.++++....+ .++.++.+|+.+. .++ .+|+|
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~----~~~--~~D~v 219 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE----SYP--EADAV 219 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC----CCC--CCCEE
Confidence 45678999999999999999999999899999997 789999887765443 5789999998762 333 36999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
++..++|+++++....+++++++.|+|||.+++.++..
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 99999998876667889999999999999999998643
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=110.69 Aligned_cols=110 Identities=17% Similarity=0.291 Sum_probs=91.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCccc--CCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYD--ASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
.++.+|||+|||+|..+..++..++ ..+++++|+++.+++.++++.... ..++.+..+|+.+ ...+.++||+|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~I 125 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA----LPFPDNSFDAV 125 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc----CCCCCCCccEE
Confidence 3568999999999999999988875 579999999999999999886542 2568888898876 23445689999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
++..++++++ +...++..+.++|+|||.+++.++...
T Consensus 126 ~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 126 TIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred EEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCC
Confidence 9999888884 678899999999999999999876443
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-15 Score=111.54 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=85.1
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccC-CCcccccCCCCCcccEEEe
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDV-TEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~-~~~~~~~~~~~~~~D~i~~ 156 (218)
+..+|||+|||+|..+..++...|..+++++|+|+.+++.++++....+ .++.++++|+ .. +...++.++||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEV--LLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHH--HHHHcCccccceEEE
Confidence 5789999999999999999888777799999999999999998765433 5789999988 43 112255678999998
Q ss_pred chhhcCCC------cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIH------PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+...+.. ......+++.+.++|+|||.|++..
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 65432221 0124678999999999999999875
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=112.69 Aligned_cols=112 Identities=15% Similarity=0.197 Sum_probs=96.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.+..++.+|||||||-|.+++.+|+.+ +.+|+|+++|+.+.+.+++++...+ .++++...|..+. .+.||
T Consensus 68 l~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~-------~e~fD 139 (283)
T COG2230 68 LGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF-------EEPFD 139 (283)
T ss_pred cCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc-------ccccc
Confidence 667899999999999999999999986 5799999999999999999765544 4788888877552 22499
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
-|++..+++|+..+....++..+.++|+|||.+++-+....+
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 999999999999888999999999999999999997766555
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-14 Score=109.06 Aligned_cols=108 Identities=19% Similarity=0.335 Sum_probs=91.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCc-cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|..+..++...+. .+++++|+++.+++.++.+.. ...++.+..+|+.+ .+++.++||+|++
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~----~~~~~~~~D~i~~ 112 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEA----LPFEDNSFDAVTI 112 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhc----CCCCCCcEEEEEE
Confidence 36789999999999999999888765 689999999999999988765 34578899998876 2345568999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
..++++++ +...+++.+.++|+|||.+++.++..
T Consensus 113 ~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 113 AFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred eeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 98888874 68899999999999999999987643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=114.39 Aligned_cols=148 Identities=13% Similarity=0.082 Sum_probs=100.6
Q ss_pred HhhhhHhhHHHHHHHhhhccCCC---cccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHH
Q psy1107 40 IEQNKKKYWDLFYKRNETKFFKD---RNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRA 115 (218)
Q Consensus 40 ~~~~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~ 115 (218)
|.....+.|+..+.. ..|+.. ...+......++....++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+
T Consensus 23 yd~~G~~lf~~i~~~--peYy~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~m 100 (301)
T TIGR03438 23 YDARGSELFEQICEL--PEYYPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADA 100 (301)
T ss_pred ccchHHHHHHHHHCC--CccccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHH
Confidence 344555667765432 222211 1223334444444456778999999999999999988764 4699999999999
Q ss_pred HHHHHhCCcccC--CCceEEeccCCCc-ccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 116 VNFFKLNPLYDA--SKMNVFPCDVTED-DILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 116 ~~~~~~~~~~~~--~~i~~~~~d~~~~-~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++.+.++..... .++.++++|+.+. .+......+...++++...++++++++...+++++++.|+|||.|++..
T Consensus 101 L~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 101 LKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 999988754322 3567788998763 1211111112334555567888988889999999999999999998854
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-14 Score=97.93 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=81.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|.++..++...|..+++++|+++.+++.++.+....+ .++.++..|+... ......+||+|++
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~v~~ 94 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA---LEDSLPEPDRVFI 94 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc---ChhhcCCCCEEEE
Confidence 45679999999999999999988777899999999999999988755433 4677777776531 1112248999998
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.... .....+++.+.+.|+|||.|++.-
T Consensus 95 ~~~~-----~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 95 GGSG-----GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCcc-----hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 5432 345689999999999999998854
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=113.11 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=82.0
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
++.+|||+|||+|.++..++...+..+++++|+|+.+++.|+.++...+ .++.+++.|+.+ .++..+||+|++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-----~~~~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-----ALPGRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-----ccCCCCccEEEE
Confidence 4579999999999999999988887899999999999999999876544 468899998754 234457999998
Q ss_pred chhh------cCCC------c-----------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVL------SAIH------P-----------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l------~~~~------~-----------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+-.. .+++ | +....++..+.++|+|||.+++-.
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5211 1111 0 124677888999999999988744
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-14 Score=107.82 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=85.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++..+ .+++|+|+|+.++..++++..... .++.+.++|+... . ++||+|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~---~~fD~i 123 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----C---GEFDIV 123 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----C---CCcCEE
Confidence 3567899999999999999998764 599999999999999998765433 3788999887652 2 589999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
++..+++|+++.+...++..+.+++++++++.+.
T Consensus 124 i~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 9999999987777888999999999887766654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-14 Score=116.30 Aligned_cols=109 Identities=16% Similarity=0.180 Sum_probs=89.5
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||||||+|.++..++... .++|+++|+|+.+++.++++... ..+.+...|... + .++||.|+
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~--l~v~~~~~D~~~------l-~~~fD~Iv 233 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG--LPVEIRLQDYRD------L-NGQFDRIV 233 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc--CeEEEEECchhh------c-CCCCCEEE
Confidence 34677899999999999999998764 36999999999999999987642 346777777643 1 35899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+..+++|++..+...+++.+.++|||||.+++..+....
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~ 272 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNK 272 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCC
Confidence 999999997667789999999999999999998765443
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-14 Score=119.12 Aligned_cols=109 Identities=22% Similarity=0.285 Sum_probs=90.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..+ .+++++|+++.+++.++.... ...++.+++.|+.... .+++.++||+|++.
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~-~~~~i~~~~~d~~~~~--~~~~~~~fD~I~~~ 110 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESING-HYKNVKFMCADVTSPD--LNISDGSVDLIFSN 110 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhc-cCCceEEEEecccccc--cCCCCCCEEEEehh
Confidence 356799999999999999998875 489999999999988765422 2357889999986532 34666789999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+++|+++++...++.++.++|||||++++.+..
T Consensus 111 ~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 111 WLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred hhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 9999998667889999999999999999997743
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-14 Score=114.99 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=84.3
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC----CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA----SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..+|||+|||+|.++..++..+|..+++++|.|+.+++.++.+...+. .++.+...|... .++..+||+|+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-----~~~~~~fDlIl 303 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-----GVEPFRFNAVL 303 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-----cCCCCCEEEEE
Confidence 469999999999999999999998999999999999999998765332 256777777654 23345899999
Q ss_pred echhhcCC---CcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAI---HPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~---~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+-.++.. +.....+++..+.+.|+|||.|++..
T Consensus 304 sNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 304 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 97665532 23345688999999999999999975
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.4e-14 Score=102.76 Aligned_cols=108 Identities=22% Similarity=0.298 Sum_probs=85.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..++ +++++|+++.+++.++.+....+.++.+..+|+.+. . .++||+|+++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-----~-~~~fD~Vi~n 89 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG-----V-RGKFDVILFN 89 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc-----c-CCcccEEEEC
Confidence 3557899999999999999998775 899999999999999988665555678888887551 1 2489999998
Q ss_pred hhhcCCCcc-------------------hHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 158 FVLSAIHPN-------------------KFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 158 ~~l~~~~~~-------------------~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
..+++.++. ....+++.+.++|+|||.+++......
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 766555321 145688999999999999999875554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-14 Score=106.86 Aligned_cols=110 Identities=21% Similarity=0.215 Sum_probs=84.8
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
+..++||||||+|.++..++..+|...++|+|++..+++.++.+....+ .++.++++|+.+.. ...++.+++|.|++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-DKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH-HhhCCCCceeEEEEE
Confidence 4569999999999999999999998999999999999999987755433 58999999986521 112445589999986
Q ss_pred hhhcCCCcc------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPN------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+...+.... ....++..+.++|||||.|++..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 543322110 11468999999999999999865
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=105.67 Aligned_cols=108 Identities=19% Similarity=0.287 Sum_probs=86.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+ .+++++|+++.+++.++.+....+.++.+...|+... .....++||+|++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~Ii~ 120 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEEL---AAEHPGQFDVVTC 120 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHh---hhhcCCCccEEEE
Confidence 4567899999999999998888764 5899999999999999876543334567777766541 1123468999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
..++++.+ +...+++.+.++|+|||.+++....
T Consensus 121 ~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 121 MEMLEHVP--DPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred hhHhhccC--CHHHHHHHHHHHcCCCcEEEEEecC
Confidence 99999885 6778999999999999999987654
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-14 Score=116.11 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=82.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++...+..+++++|+|+.+++.++++....+.++.+.++|+.+... + ..++||+|++
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l--~-~~~~FDLIVS 325 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDM--P-SEGKWDIIVS 325 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccc--c-cCCCccEEEE
Confidence 345679999999999999999887777899999999999999999876555678999999865321 1 1347999999
Q ss_pred chhhcCC------------Cc-----------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAI------------HP-----------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~------------~~-----------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+-..... .| +....+++.+.+.|+|||.+++..
T Consensus 326 NPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 326 NPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5432100 00 124477778889999999887744
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-14 Score=111.82 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=81.2
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.+|||+|||+|.++..++...|..+++++|+|+.+++.|++++...+ .++.++++|+.+ .++.++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-----~l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-----ALPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-----hCCCCCccEEEECC
Confidence 68999999999999999988888899999999999999999876544 468999998754 22345799999852
Q ss_pred hh-------------cCCCc----------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VL-------------SAIHP----------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l-------------~~~~~----------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.. .+-|. +....++..+.++|+|||.+++-.
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 11 11110 124578899999999999998844
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-14 Score=110.92 Aligned_cols=104 Identities=19% Similarity=0.199 Sum_probs=81.0
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.+|||+|||+|.++..++...+..+++++|+|+.+++.++.+....+ .++.++++|+.+ .++..+||+|+++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-----~~~~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-----PLAGQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-----cCcCCCccEEEECC
Confidence 69999999999999999988887899999999999999999866444 348899998865 23334799999852
Q ss_pred -------------hhcCCCc----------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 -------------VLSAIHP----------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 -------------~l~~~~~----------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+..|-|. +....++..+.++|+|||.+++..
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1122111 145678899999999999888754
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=110.63 Aligned_cols=105 Identities=20% Similarity=0.243 Sum_probs=84.8
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
...+|||+|||+|.++..++..+|..+++++|+|+.+++.++.+....+....+...|+.. .. .++||+|+++.
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~-----~~-~~~fDlIvsNP 269 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS-----DI-KGRFDMIISNP 269 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc-----cc-CCCccEEEECC
Confidence 3458999999999999999998888899999999999999998766554455666677644 12 45899999988
Q ss_pred hhcCCC---cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIH---PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+|... .+....++..+.+.|+|||.|+++.
T Consensus 270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 777532 2456789999999999999998865
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-13 Score=103.08 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=81.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc----ccCCCCCcc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI----LNQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~~~ 151 (218)
..++.+|||+|||+|.++..+++.. +...|+++|+++- .. ..++.++++|+.+... ...+..++|
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~~----~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------DP----IVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------cC----CCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 4667899999999999999888774 4469999999881 11 1368899999987421 112456789
Q ss_pred cEEEechhhcCCCcc--h-------HHHHHHHHHHhccCCeEEEEEecCCCchhhh
Q psy1107 152 DIATLIFVLSAIHPN--K-------FSTVVKNLFIMLKSGGIILFRDYGLHDMAQM 198 (218)
Q Consensus 152 D~i~~~~~l~~~~~~--~-------~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~~ 198 (218)
|+|++....++.... + ...++..+.++|+|||.|++..+...+....
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~ 174 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEY 174 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHH
Confidence 999997654443210 1 2468899999999999999988877664433
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=103.13 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=81.5
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++..++..+++++|+++.+++.++++....+ .++.++..|... .++ ++||+|
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-----~~~-~~~D~v 101 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-----ELP-GKADAI 101 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-----hcC-cCCCEE
Confidence 3457789999999999999999988887899999999999999988755433 467888777632 222 479999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++..... ....++..+.+.|+|||.+++..
T Consensus 102 ~~~~~~~-----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 102 FIGGSGG-----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EECCCcc-----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 9865432 34578899999999999998865
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=105.19 Aligned_cols=101 Identities=21% Similarity=0.266 Sum_probs=80.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++..+ ..++++|+|+.+++.++.+....+ .++.+..+|+.. ..++||+|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~fD~v 131 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES-------LLGRFDTV 131 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh-------ccCCcCEE
Confidence 3467899999999999999998776 479999999999999998754433 368888888432 23579999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li 186 (218)
++..+++|++......++..+.+.+++++++.
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 99999988876777888888888776555443
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-13 Score=103.66 Aligned_cols=101 Identities=19% Similarity=0.138 Sum_probs=78.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
..++.+|||+|||+|..+..++... +..+++++|+++.+++.++++....+ .++.++.+|+.+. .....+||+
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~----~~~~~~fD~ 145 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG----LEKHAPFDA 145 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC----CccCCCccE
Confidence 4567899999999999998888754 34599999999999999988765443 3588999988652 122458999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++..++.+++ ..+.+.|+|||.|++..
T Consensus 146 Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 146 IIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 99987766553 35778999999998854
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=107.66 Aligned_cols=106 Identities=22% Similarity=0.312 Sum_probs=81.9
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+|||+|||+|.++..++...+...++++|+++.+++.++.+....+ .++.+.++|+.+ .++.++||+|+++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-----~~~~~~fD~Vi~n 161 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-----PLPGGKFDLIVSN 161 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-----cCcCCceeEEEEC
Confidence 4569999999999999999988777899999999999999998865444 468888988765 2345689999985
Q ss_pred hhhcC------CCcc------------------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSA------IHPN------------------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~------~~~~------------------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..... +.++ ....++..+.++|+|||.+++..
T Consensus 162 pPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 33221 1111 12467889999999999998865
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=108.07 Aligned_cols=108 Identities=20% Similarity=0.252 Sum_probs=82.9
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc-ccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL-YDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..++.+|||+|||+|..+..++...+..+++++|+++.+++.++.+.. ....++.+..+|+.. +++.++||+|+
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-----~~~~~~fD~Iv 180 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-----PLPGGRFDLIV 180 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-----cCCCCceeEEE
Confidence 346779999999999999999988877899999999999999998865 223578999998854 22346899999
Q ss_pred echhhc------CCCc------------------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLS------AIHP------------------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~------~~~~------------------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++-... .+.+ +....++..+.++|+|||.+++..
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 853211 0111 124577888889999999998854
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=108.14 Aligned_cols=99 Identities=20% Similarity=0.303 Sum_probs=78.4
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCc---cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKI---CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~---~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
+..+|||+|||+|.++..++...+. ..++|+|+|+.+++.|.++. .++.+.+.|+.+ .++++++||+|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~----lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHR----LPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeeccc----CCCcCCceeEEE
Confidence 4578999999999999998876542 37999999999999998653 468888888876 467778999999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+... + ..+.++.++|||||+|++...+...
T Consensus 157 ~~~~----~-----~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 157 RIYA----P-----CKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred EecC----C-----CCHHHHHhhccCCCEEEEEeCCCcc
Confidence 7542 1 2357789999999999998765443
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-14 Score=112.16 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=83.1
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-------c----CCCceEEeccCCCcccccCCC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-------D----ASKMNVFPCDVTEDDILNQVP 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-------~----~~~i~~~~~d~~~~~~~~~~~ 147 (218)
++.+|||+|||.|..+..+..... ..++|+|++..+++.|+.+... . .-...|+..|.....+...++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 788999999999999999988765 4999999999999999988611 0 123456777777655444444
Q ss_pred C--CcccEEEechhhcCCC--cchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 148 H--NSVDIATLIFVLSAIH--PNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 148 ~--~~~D~i~~~~~l~~~~--~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
. ..||+|.|.+.+|++- .+..+.++..+...|+|||+|+.....
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 4 4899999999999873 356678999999999999999987643
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-13 Score=102.03 Aligned_cols=105 Identities=17% Similarity=0.205 Sum_probs=78.4
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||+|||+|.++..++...+...|+++|+++.+++.+.+++... .++.++.+|+........++ .+||+|+
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~ 146 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHVV-EKVDVIY 146 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEE
Confidence 445788999999999999999988755568999999999988776654432 57888889886521111233 3699998
Q ss_pred echhhcCCC-cchHHHHHHHHHHhccCCeEEEE
Q psy1107 156 LIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 156 ~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
+. ++ +.....++..+.++|||||.+++
T Consensus 147 ~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 147 QD-----VAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EC-----CCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 53 22 22334568999999999999999
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-13 Score=110.95 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=87.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..+..+||||||+|.++..+|...|...++|+|+++.+++.+..++...+ .++.++++|+... ...++++++|.|++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l--l~~~~~~s~D~I~l 198 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL--LELLPSNSVEKIFV 198 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh--hhhCCCCceeEEEE
Confidence 34569999999999999999999999999999999999999988865544 6899999998652 23567789999998
Q ss_pred chhhcCCCcc----hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPN----KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~----~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+...+.... ....++..+.++|+|||.+.+..
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 6543332111 12478999999999999999854
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-13 Score=102.79 Aligned_cols=103 Identities=19% Similarity=0.087 Sum_probs=80.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|..+..++... +..+++++|+++.+++.++++....+ .++.+.++|.... ..+.++||
T Consensus 72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~----~~~~~~fD 147 (212)
T PRK13942 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG----YEENAPYD 147 (212)
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC----CCcCCCcC
Confidence 345678899999999999998888763 44699999999999999998866544 5789999998652 23346899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++......+ ...+.+.|+|||.+++..
T Consensus 148 ~I~~~~~~~~~--------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 148 RIYVTAAGPDI--------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCCcccc--------hHHHHHhhCCCcEEEEEE
Confidence 99987655443 235667899999988864
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=94.51 Aligned_cols=107 Identities=21% Similarity=0.394 Sum_probs=84.2
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
+.+|||+|||+|.++..+++.+ ..+++++|+++.+++.++.+....+ .++.+++.|+.+.. ..++.++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhccCceeEEEEEC
Confidence 4689999999999999999888 5799999999999999999877654 57899999986632 34667899999997
Q ss_pred hhhcCCC------cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIH------PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
-...... ......+++.+.++|+|||.+++..
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6554321 1235688999999999999998864
|
... |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-13 Score=105.20 Aligned_cols=107 Identities=20% Similarity=0.217 Sum_probs=80.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC--CceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS--KMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~--~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
.-.+.+|||||||+|..+..++..++. .|+|+|.+..............+. .+.+....+.+ .+. .+.||+|
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~----Lp~-~~~FDtV 186 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED----LPN-LGAFDTV 186 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh----ccc-cCCcCEE
Confidence 346889999999999999999999874 899999988776554433222222 23333233333 222 4689999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+|++|++|. .++...+.+++..|+|||.|++-...
T Consensus 187 F~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 187 FSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred EEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEee
Confidence 999999999 48889999999999999999986543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.5e-13 Score=101.49 Aligned_cols=102 Identities=19% Similarity=0.098 Sum_probs=79.1
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++++...+ .++.++..|.... .....+||+
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~----~~~~~~fD~ 149 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG----WEPLAPYDR 149 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC----CcccCCCCE
Confidence 45678899999999999999988774 34579999999999999998866544 5789999988652 122348999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++.....++ ...+.+.|+|||++++.-
T Consensus 150 Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 150 IYVTAAGPKI--------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred EEEcCCcccc--------cHHHHHhcCcCcEEEEEE
Confidence 9987554433 345678899999998864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=103.27 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=89.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.......+|||+|||+|..+..++.+.+.++++++|+++++.+.|+++...++ .++++++.|+.+.. ......+||
T Consensus 40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~--~~~~~~~fD 117 (248)
T COG4123 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL--KALVFASFD 117 (248)
T ss_pred cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh--hcccccccC
Confidence 33445789999999999999999998777899999999999999999976644 68999999997732 234444799
Q ss_pred EEEechhhcCCC----------------cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIH----------------PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~----------------~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|+|+-...... ..+...+++.+.++|||||.+.++.
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 999954433221 1225688899999999999999876
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-13 Score=103.90 Aligned_cols=104 Identities=24% Similarity=0.340 Sum_probs=88.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...+..+|||||+|.|.++..+++.+|+.+++.+|. |.+++.+++ ..++.+..+|+.+ ++|. +|+++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~-----~~P~--~D~~~ 163 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFD-----PLPV--ADVYL 163 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTT-----CCSS--ESEEE
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHHh-----hhcc--cccee
Confidence 345667999999999999999999999999999998 888888887 4689999999974 3444 99999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCC--eEEEEEecCC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSG--GIILFRDYGL 192 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~g--G~li~~~~~~ 192 (218)
+..++|++++++...+|+++++.|+|| |.|++.++-.
T Consensus 164 l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 164 LRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp EESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred eehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 999999999999999999999999999 9999988553
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=104.63 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=75.6
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc------CCCceEEeccCCCcccccCCCCCccc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD------ASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~------~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.++++.... ..++.|...|+.. + .++||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~------l-~~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES------L-SGKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh------c-CCCcC
Confidence 56799999999999999999865 58999999999999999885432 2356777777643 1 35899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEE
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li 186 (218)
+|+|..+++|++.+....++..+.++ .++|+++
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHHhh-cCCEEEE
Confidence 99999999998765566677777654 5665543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=101.35 Aligned_cols=110 Identities=20% Similarity=0.207 Sum_probs=86.9
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC-CceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS-KMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
...+|||+|||.|.+++.+++.+|..+++.+|.|..+++.++.+...+.. +..+...|... +... +||+|+++
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-----~v~~-kfd~IisN 231 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-----PVEG-KFDLIISN 231 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-----cccc-cccEEEeC
Confidence 34499999999999999999999999999999999999999999876553 33555666544 3444 89999998
Q ss_pred hhhcCCC---cchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 158 FVLSAIH---PNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 158 ~~l~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
-.+|.-- +.-..+++..+.+.|++||.|.++..+..+
T Consensus 232 PPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~ 271 (300)
T COG2813 232 PPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLP 271 (300)
T ss_pred CCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCC
Confidence 7776332 122348899999999999999998764333
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.1e-13 Score=100.84 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=80.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+. .+++++|+++.+++.++.+....+.++.++..|+.. .++.++||+|++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~-~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-----~~~~~~fD~Vi~ 107 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGA-GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-----AVEFRPFDVVVS 107 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-----hccCCCeeEEEE
Confidence 35668999999999999999887643 499999999999999988765544467777887754 234568999998
Q ss_pred chhhcCCCc-------------------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHP-------------------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~-------------------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+......+. .....++..+.++|+|||.+++..
T Consensus 108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 643221110 124567888999999999999854
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=104.08 Aligned_cols=108 Identities=18% Similarity=0.278 Sum_probs=80.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++..+. .+++++|+++.+++.++++....+ ..+.+...+. .....++||+|
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~-~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~------~~~~~~~fDlV 229 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL------EQPIEGKADVI 229 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc------ccccCCCceEE
Confidence 34678999999999999988887654 489999999999999998865443 2344444432 12234589999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
+++... .....++..+.++|+|||.++++........
T Consensus 230 van~~~-----~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~ 266 (288)
T TIGR00406 230 VANILA-----EVIKELYPQFSRLVKPGGWLILSGILETQAQ 266 (288)
T ss_pred EEecCH-----HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHH
Confidence 986432 3456788999999999999999876554433
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.1e-13 Score=103.53 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=78.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCC--ceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASK--MNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~--i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.+++..++.+.. +++|+|+++.+++.++.|+..++-. ++....+.. .....++||+|
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~-~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~-----~~~~~~~~DvI 233 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAK-KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL-----EVPENGPFDVI 233 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCc-eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch-----hhcccCcccEE
Confidence 458899999999999999999998864 8999999999999999997765532 112111111 12223589999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+++- +. +-...+...+.+.|+|||+++++..-
T Consensus 234 VANI-LA----~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 234 VANI-LA----EVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred Eehh-hH----HHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 9853 22 34568889999999999999997733
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=99.57 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=85.2
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC-CceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS-KMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.+.+|||+|||+|.++..++..+ .+++++|+++.+++.++.+....+. ++.+...|+.+.. ....++||+|++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA---EKGAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh---cCCCCCccEEEeh
Confidence 47799999999999999888765 4799999999999999887554433 5788777765521 1113589999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+++++. +...++..+.++|+|||.+++....
T Consensus 120 ~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 120 EVLEHVP--DPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hHHHhCC--CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9999884 7788999999999999999987654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-12 Score=104.30 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=86.4
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++..+ ..++|+|+++.++..++.++...+ .++.+...|+.+ .+++.++||+|
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~~--~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~----l~~~~~~~D~I 252 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLMG--AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK----LPLSSESVDAI 252 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHhC--CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc----CCcccCCCCEE
Confidence 45677899999999999998876654 589999999999999998866544 457888999877 34445689999
Q ss_pred EechhhcC---C----CcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 155 TLIFVLSA---I----HPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 155 ~~~~~l~~---~----~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
++...... . ..+....++..+.++|+|||.+++......+..
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~ 301 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLE 301 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHH
Confidence 99533211 1 112357899999999999999988764443433
|
This family is found exclusively in the Archaea. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-12 Score=102.75 Aligned_cols=103 Identities=20% Similarity=0.289 Sum_probs=79.1
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEechhh
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVL 160 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l 160 (218)
+|||+|||+|..++.++..+|.++|+++|+|+.+++.|+.|+..++ .++.++..|+.. +... +||+|+++-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-----~~~~-~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-----PLRG-KFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-----ccCC-ceeEEEeCCCC
Confidence 7999999999999999999998999999999999999999987766 555566666543 3333 89999995421
Q ss_pred c--C---CCc------------------chHHHHHHHHHHhccCCeEEEEEec
Q psy1107 161 S--A---IHP------------------NKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 161 ~--~---~~~------------------~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
- . ..+ +....++..+.+.|+|||.+++-..
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 1 0 101 1245788889999999998888553
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=97.03 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=81.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
...++.+|||+|||+|.++..++.. .+..+++++|+++.+++.++++....+ .++.++..|..+. .....+.||
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~---l~~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI---LFTINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh---HhhcCCCCC
Confidence 3457789999999999999998765 455699999999999999988765443 5788888887541 111234799
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
.|++... ......+++.+.+.|+|||.+++.
T Consensus 114 ~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 114 RIFIGGG-----SEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred EEEECCC-----cccHHHHHHHHHHHcCCCcEEEEE
Confidence 9997431 135678999999999999999873
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-12 Score=97.33 Aligned_cols=102 Identities=17% Similarity=0.022 Sum_probs=77.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||+|||+|..+..++... .+++++|+++.+++.++++....+ .++.+...|..+. ..+.++||+
T Consensus 74 l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~ 147 (212)
T PRK00312 74 LELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG----WPAYAPFDR 147 (212)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC----CCcCCCcCE
Confidence 345677899999999999998777765 389999999999999998765444 4688888887541 112358999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|++...+.++ ...+.+.|+|||.+++.-.
T Consensus 148 I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 148 ILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 9987654433 3456789999999988664
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-12 Score=96.70 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=81.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++...+..+++++|+++.+++.++++....+ .++.++..|+.+. ...+. ..+|.+
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~--~~~~~-~~~d~v 113 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC--LAQLA-PAPDRV 113 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH--HhhCC-CCCCEE
Confidence 3456789999999999999999877676799999999999999998765443 4688888887541 11111 235666
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+... . .....+++.+.++|+|||.+++......
T Consensus 114 ~~~~----~--~~~~~~l~~~~~~LkpgG~li~~~~~~~ 146 (196)
T PRK07402 114 CIEG----G--RPIKEILQAVWQYLKPGGRLVATASSLE 146 (196)
T ss_pred EEEC----C--cCHHHHHHHHHHhcCCCeEEEEEeecHH
Confidence 5421 1 3567889999999999999999875543
|
|
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.8e-13 Score=102.58 Aligned_cols=150 Identities=15% Similarity=0.182 Sum_probs=103.4
Q ss_pred chhhHHHHhhhhHhhHHHHHHHhhhccC---CCcccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEE
Q psy1107 33 SKHVAEEIEQNKKKYWDLFYKRNETKFF---KDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHAC 109 (218)
Q Consensus 33 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~ 109 (218)
+...+.+|+.......... ..++.+ .-++|+...+... ...+...++++|||.|..++.+-.++.+ .++|+
T Consensus 73 ~~~Va~HYN~~~e~g~e~R---q~S~Ii~lRnfNNwIKs~LI~~--y~~~~~~~~~LgCGKGGDLlKw~kAgI~-~~igi 146 (389)
T KOG1975|consen 73 SSEVAEHYNERTEVGREKR---QRSPIIFLRNFNNWIKSVLINL--YTKRGDDVLDLGCGKGGDLLKWDKAGIG-EYIGI 146 (389)
T ss_pred hHHHHHHHHHHHHHhHhhh---ccCceeehhhhhHHHHHHHHHH--HhccccccceeccCCcccHhHhhhhccc-ceEee
Confidence 4455666665544443321 112221 2235555444443 3567789999999999999999877654 99999
Q ss_pred eCCHHHHHHHHhCCcccC---C----CceEEeccCCCcccc--cCCCCCcccEEEechhhcCCC--cchHHHHHHHHHHh
Q psy1107 110 DISPRAVNFFKLNPLYDA---S----KMNVFPCDVTEDDIL--NQVPHNSVDIATLIFVLSAIH--PNKFSTVVKNLFIM 178 (218)
Q Consensus 110 D~s~~~~~~~~~~~~~~~---~----~i~~~~~d~~~~~~~--~~~~~~~~D~i~~~~~l~~~~--~~~~~~~l~~~~~~ 178 (218)
|++...++.|+.+..... . .+.|+.+|-+...+. ..+++.+||+|-|.+++|+.- .+..+.++..+.+.
T Consensus 147 DIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~ 226 (389)
T KOG1975|consen 147 DIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKC 226 (389)
T ss_pred ehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhh
Confidence 999999999998754221 1 367888887665432 233555699999999998663 45678899999999
Q ss_pred ccCCeEEEEE
Q psy1107 179 LKSGGIILFR 188 (218)
Q Consensus 179 Lk~gG~li~~ 188 (218)
|+|||+++-.
T Consensus 227 LkpGG~FIgT 236 (389)
T KOG1975|consen 227 LKPGGVFIGT 236 (389)
T ss_pred cCCCcEEEEe
Confidence 9999977654
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-12 Score=102.82 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=79.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||+|.+++..++.+. .+|+++|+++.+++.|+.|+..++-...+..... .....++||+|
T Consensus 157 ~~~~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~------~~~~~~~~dlv 229 (295)
T PF06325_consen 157 KYVKPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS------EDLVEGKFDLV 229 (295)
T ss_dssp HHSSTTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT------SCTCCS-EEEE
T ss_pred HhccCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe------cccccccCCEE
Confidence 3346778999999999999999998875 3899999999999999999776663223322211 22334689999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
+++-. .+....+...+.++|+|||.|+++..-.....
T Consensus 230 vANI~-----~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~ 266 (295)
T PF06325_consen 230 VANIL-----ADVLLELAPDIASLLKPGGYLILSGILEEQED 266 (295)
T ss_dssp EEES------HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHH
T ss_pred EECCC-----HHHHHHHHHHHHHhhCCCCEEEEccccHHHHH
Confidence 98532 23556788888999999999999875544443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-12 Score=99.58 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=86.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc--CCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD--ASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||||||.|.++..++...|..+++++|+++.+++.|++.+... ..++.++..|+.+. .... .++||+|
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~--l~~~-~~~yD~I 140 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY--IAVH-RHSTDVI 140 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH--HHhC-CCCCCEE
Confidence 44677999999999999999988888889999999999999999886543 36789999987652 1122 2479999
Q ss_pred Eechhh-cCCCcc-hHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 155 TLIFVL-SAIHPN-KFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 155 ~~~~~l-~~~~~~-~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
++...- ...++. ....++..+.+.|+|||.+++.-+...
T Consensus 141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 985311 112211 236899999999999999998655433
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.2e-12 Score=84.08 Aligned_cols=102 Identities=23% Similarity=0.360 Sum_probs=80.8
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc-ccCCCceEEeccCCCcccccCCCCCcccEEEechhh
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL-YDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVL 160 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l 160 (218)
+++|+|||.|..+..++. .+..+++++|+++..+..+++... ....++.+...|+.+.. ....+++|+|++..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP---PEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhc---cccCCceEEEEEccce
Confidence 589999999999988887 345699999999999998884322 22357888888887632 1234589999999888
Q ss_pred cCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 161 SAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+++ ......+++.+.+.|+|||.+++.
T Consensus 77 ~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 773 357889999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-12 Score=96.08 Aligned_cols=101 Identities=20% Similarity=0.254 Sum_probs=74.7
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEecc--CCCcc-cccCCCCCcccEEEec
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCD--VTEDD-ILNQVPHNSVDIATLI 157 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d--~~~~~-~~~~~~~~~~D~i~~~ 157 (218)
..++|+|||+|.-++.++.... +|+++|+|+.+++.+.+.... .+.+.- +.+.+ +.+.-.+++.|+|+|.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~-----~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPV-----TYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCc-----ccccCCccccccccccccCCCcceeeehhh
Confidence 4899999999977777777653 899999999999999887442 222211 11111 1111226699999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCe-EEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGG-IILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG-~li~~~~~ 191 (218)
..+|++ +..++.+.+.++||+.| .+.+..|.
T Consensus 108 qa~HWF---dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 108 QAVHWF---DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hhHHhh---chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 999999 78899999999998755 77776655
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.9e-12 Score=91.33 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=87.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
..+.++..++|||||+|..+.+++..+|.++++++|-++++++..++|....+ +|+.++.++.-+. +...+ ++|.
T Consensus 30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~--L~~~~--~~da 105 (187)
T COG2242 30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA--LPDLP--SPDA 105 (187)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh--hcCCC--CCCE
Confidence 55678899999999999999999988899999999999999999999876554 7899999987541 12222 6999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+.... .....+++.+...|+|||.++..-
T Consensus 106 iFIGGg------~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 106 IFIGGG------GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred EEECCC------CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 998765 256789999999999999999865
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-12 Score=109.17 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=78.8
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
+.+|||+|||+|.++..++...|..+++++|+|+.+++.|+.++...+ .++.++++|+.+ .++.++||+|+++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-----~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-----NIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-----hCcCCCccEEEEC
Confidence 468999999999999999887777899999999999999999865443 468888888754 2334579999984
Q ss_pred hhh--------------cCCC-------c---chHHHHHHHHHHhccCCeEEEEE
Q psy1107 158 FVL--------------SAIH-------P---NKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 158 ~~l--------------~~~~-------~---~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
-.. .+-| . +.+..++..+.++|+|||.+++.
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 311 1111 0 12456778889999999998874
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-12 Score=98.80 Aligned_cols=101 Identities=20% Similarity=0.282 Sum_probs=74.6
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC--CceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS--KMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~--~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++..+.. +++++|+|+.+++.++++....+. .+.+.. .+.+||+|
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~------------~~~~fD~V 183 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQ------------GDLKADVI 183 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEcc------------CCCCcCEE
Confidence 457889999999999999888776653 799999999999999988654331 111111 11169999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
+++.. .+....++..+.++|+|||.+++........
T Consensus 184 vani~-----~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~ 219 (250)
T PRK00517 184 VANIL-----ANPLLELAPDLARLLKPGGRLILSGILEEQA 219 (250)
T ss_pred EEcCc-----HHHHHHHHHHHHHhcCCCcEEEEEECcHhhH
Confidence 98532 2345678899999999999999987654443
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-12 Score=93.06 Aligned_cols=93 Identities=23% Similarity=0.298 Sum_probs=78.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||.|.+...+... .+.+.+|+|+++..+..+.++ .+.++++|+.+. ...+++++||.|
T Consensus 9 ~~I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~g--L~~f~d~sFD~V 79 (193)
T PF07021_consen 9 EWIEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEG--LADFPDQSFDYV 79 (193)
T ss_pred HHcCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHh--HhhCCCCCccEE
Confidence 44578899999999999999888765 457999999999999999876 577899998773 356889999999
Q ss_pred EechhhcCCCcchHHHHHHHHHHh
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIM 178 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~ 178 (218)
+++.++.++ ..+..+++++.++
T Consensus 80 IlsqtLQ~~--~~P~~vL~EmlRV 101 (193)
T PF07021_consen 80 ILSQTLQAV--RRPDEVLEEMLRV 101 (193)
T ss_pred ehHhHHHhH--hHHHHHHHHHHHh
Confidence 999999999 4788888888766
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.9e-12 Score=94.75 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=73.5
Q ss_pred CCCcEEEEecCCCchhHHHHh----hc----CC-ccEEEEEeCCHHHHHHHHhCC-------------------cc----
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLL----SW----SK-ICYIHACDISPRAVNFFKLNP-------------------LY---- 125 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~----~~----~~-~~~v~~~D~s~~~~~~~~~~~-------------------~~---- 125 (218)
.+..+|+..||++|.-...+| +. .+ ..+++|+|+|+.+++.|++-. ..
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 367899999999995544433 31 11 469999999999999998742 00
Q ss_pred ------cCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 126 ------DASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 126 ------~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.-..+.|...|+.+ ...+.+.||+|+|..|+.++.++....+++.+.+.|+|||+|++...
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~----~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLD----PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-----S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eeEChHHcCceEEEecccCC----CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 01457788888776 23344689999999999999988899999999999999999999663
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=96.42 Aligned_cols=133 Identities=13% Similarity=0.141 Sum_probs=93.3
Q ss_pred HHhhhccCCCcccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHh----hcC----CccEEEEEeCCHHHHHHHHhCCc
Q psy1107 53 KRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLL----SWS----KICYIHACDISPRAVNFFKLNPL 124 (218)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~----~~~----~~~~v~~~D~s~~~~~~~~~~~~ 124 (218)
..+.+.||++.... ..+...+....+..+|+..||++|.-...+| +.. ...+|+|+|+|+.+++.|++-.-
T Consensus 90 tineT~FFRd~~~f-~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y 168 (287)
T PRK10611 90 TTNLTAFFREAHHF-PILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIY 168 (287)
T ss_pred hCCCCCccCCcHHH-HHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCC
Confidence 34456777775432 2232322222345899999999995444333 221 13689999999999999987520
Q ss_pred c-----------------------------cC---CCceEEeccCCCcccccCC-CCCcccEEEechhhcCCCcchHHHH
Q psy1107 125 Y-----------------------------DA---SKMNVFPCDVTEDDILNQV-PHNSVDIATLIFVLSAIHPNKFSTV 171 (218)
Q Consensus 125 ~-----------------------------~~---~~i~~~~~d~~~~~~~~~~-~~~~~D~i~~~~~l~~~~~~~~~~~ 171 (218)
. .+ ..+.|...|+.+. ++ +.+.||+|+|..++.|++++....+
T Consensus 169 ~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~----~~~~~~~fD~I~cRNvliyF~~~~~~~v 244 (287)
T PRK10611 169 RQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAK----QWAVPGPFDAIFCRNVMIYFDKTTQERI 244 (287)
T ss_pred CHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCC----CCccCCCcceeeHhhHHhcCCHHHHHHH
Confidence 0 01 3467777777652 22 2468999999999999988889999
Q ss_pred HHHHHHhccCCeEEEEEec
Q psy1107 172 VKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 172 l~~~~~~Lk~gG~li~~~~ 190 (218)
+..+.+.|+|||+|++..-
T Consensus 245 l~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 245 LRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred HHHHHHHhCCCcEEEEeCc
Confidence 9999999999999998663
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.8e-12 Score=92.76 Aligned_cols=106 Identities=22% Similarity=0.220 Sum_probs=79.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC-C--ceEEeccCCCcccccCCCCCcccEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS-K--MNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~-~--i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++....+. + +.++.+|+.+ .+...+||+|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-----PFRGDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-----cccccCceEE
Confidence 567799999999999999998873 6999999999999999877554332 2 7888888755 2334479999
Q ss_pred EechhhcCCC-------------------cchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIH-------------------PNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~-------------------~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+++..+.... ......+++.+.++|+|||.+++...
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 9865432211 12245688999999999999888653
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-12 Score=99.86 Aligned_cols=106 Identities=23% Similarity=0.222 Sum_probs=78.1
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
+.+|||+|||+|.++..++...+..+++++|+|+.+++.++.++...+ +.++++|+.+.. .... .++||+|+++-.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l-~~~~-~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDAL-PTAL-RGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhc-chhc-CCCEeEEEECCC
Confidence 458999999999999999887776799999999999999998865433 578888876521 1111 247999998643
Q ss_pred hc------CCCcc------------------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 160 LS------AIHPN------------------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 160 l~------~~~~~------------------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.. .++++ ....++..+.++|+|||.+++..
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 21 11111 13577888889999999988764
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=91.69 Aligned_cols=102 Identities=15% Similarity=0.049 Sum_probs=83.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||||||+|..+..+++.. .+|+.+|..+...+.|+++....+ .|+.+.++|... ..-+...||.
T Consensus 68 L~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~----G~~~~aPyD~ 141 (209)
T COG2518 68 LELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK----GWPEEAPYDR 141 (209)
T ss_pred hCCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc----CCCCCCCcCE
Confidence 566788999999999999999998876 399999999999999999877766 489999999876 2223368999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+.......+| ..+.+.|++||++++...
T Consensus 142 I~Vtaaa~~vP--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 142 IIVTAAAPEVP--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEeeccCCCC--------HHHHHhcccCCEEEEEEc
Confidence 99987666554 335568899999999775
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=92.09 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=73.5
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||+|||+|.++..++... ...++++|+++.+++.++.. ++.+++.|+.+. ..++++++||+|+
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~--l~~~~~~sfD~Vi 80 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEG--LEAFPDKSFDYVI 80 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhc--ccccCCCCcCEEE
Confidence 34567799999999999998887653 35789999999999988653 467778887541 1235567899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKS 181 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~ 181 (218)
+..+++|++ +...+++++.+.+++
T Consensus 81 ~~~~l~~~~--d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 81 LSQTLQATR--NPEEILDEMLRVGRH 104 (194)
T ss_pred EhhHhHcCc--CHHHHHHHHHHhCCe
Confidence 999999995 677888888776654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=95.79 Aligned_cols=106 Identities=15% Similarity=0.086 Sum_probs=77.2
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++... +...|+++|+++.+.+.....+... .|+.++..|+..... ......++|+|
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~-y~~~~~~vDvV 206 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQK-YRMLVPMVDVI 206 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhh-hhcccCCCCEE
Confidence 35678899999999999999999873 4568999999987654443332211 478888899865321 11122479999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
++... .++....++.++.++|||||.|++
T Consensus 207 ~~Dva----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 207 FADVA----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred EEeCC----CcchHHHHHHHHHHhccCCCEEEE
Confidence 88652 345666777889999999999999
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-11 Score=93.09 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=98.3
Q ss_pred HhhHHHH---HHHhhhccCCCcccchH----HHHHHhhhcC-CCcEEEEecCCCchhHHHH----hhcCC-----ccEEE
Q psy1107 45 KKYWDLF---YKRNETKFFKDRNWTVN----EFHEFVNQDV-GEGVLLEVGCGVGNFIFPL----LSWSK-----ICYIH 107 (218)
Q Consensus 45 ~~~w~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~vLDiGcG~G~~~~~~----~~~~~-----~~~v~ 107 (218)
...|+.+ ...+.+.||++...... .++.++.... ...+|+-.||++|.-...+ .+..+ ..+|+
T Consensus 54 ~~e~~~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~ 133 (268)
T COG1352 54 SEELQAFLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKIL 133 (268)
T ss_pred HHHHHHHHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEE
Confidence 4445543 34456777777643221 2222322222 4789999999999543333 33332 47999
Q ss_pred EEeCCHHHHHHHHhCCcc-------------------c-----------CCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 108 ACDISPRAVNFFKLNPLY-------------------D-----------ASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 108 ~~D~s~~~~~~~~~~~~~-------------------~-----------~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
|+|+|..+++.|+.-.-. . -..|.|...|+..+ .+..+.||+|+|.
T Consensus 134 AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~----~~~~~~fD~IfCR 209 (268)
T COG1352 134 ATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDD----SPFLGKFDLIFCR 209 (268)
T ss_pred EEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCC----ccccCCCCEEEEc
Confidence 999999999999874200 0 13466777777663 2244589999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.|+.++.......+++.+...|+|||+|++..-.
T Consensus 210 NVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 210 NVLIYFDEETQERILRRFADSLKPGGLLFLGHSE 243 (268)
T ss_pred ceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence 9999998888999999999999999999997643
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=98.15 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=81.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc------cCCCceEEeccCCCcccccCCCCCcc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY------DASKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~------~~~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
.++.+||++|||.|..+..+++..+..+|+++|+++.+++.|++.+.. ...++.++..|.... .....++|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~---l~~~~~~y 151 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF---VAETENSF 151 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH---HhhCCCcc
Confidence 456799999999999999998764445899999999999999987542 235788999987652 12235689
Q ss_pred cEEEechhhcCCCcch--HHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNK--FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~--~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|++...-...++.. ...+++.+.+.|+|||.+++..
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9999854322222111 2577889999999999988743
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=101.55 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=84.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||+|..+..++...+..+++++|+++.+++.++.++...+.++.+++.|+.+.. ...+.++||.|
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~--~~~~~~~fD~V 317 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA--QWWDGQPFDRI 317 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch--hhcccCCCCEE
Confidence 3456788999999999999999998876569999999999999999987766555788888887521 11234579999
Q ss_pred EechhhcC------C-------Ccc-------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSA------I-------HPN-------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~------~-------~~~-------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++...... - .++ .+..++..+.++|||||.++++.
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 96332111 0 111 13478999999999999999865
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=90.11 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=77.4
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-CCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-ASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
+..++||+|+|.|..+..++...- -+|-.+|..+..++.|++..... +.-..++++.+.+ ...+.++||+|++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~----f~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQD----FTPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--------TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhh----ccCCCCcEeEEEeh
Confidence 467999999999999987754432 38999999999999999765442 2335666666554 12224589999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+++.|+++++...++.++...|+|+|++++-+
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 99999999999999999999999999999865
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-11 Score=90.57 Aligned_cols=110 Identities=14% Similarity=0.166 Sum_probs=77.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc----ccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI----LNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~ 149 (218)
....++.+|||+|||+|.++..++... +..+++++|+++.+ . ..++.+++.|+.+... ...++.+
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~----~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P----IENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c----CCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 445678899999999999998888764 44689999999854 1 1357788888765321 0124456
Q ss_pred cccEEEechhhcC-----CC----cchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 150 SVDIATLIFVLSA-----IH----PNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 150 ~~D~i~~~~~l~~-----~~----~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+||+|++....+. +. .+....++..+.++|+|||.+++..+....
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~ 151 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEE 151 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCcc
Confidence 8999998543211 10 012467899999999999999996655444
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-11 Score=93.41 Aligned_cols=111 Identities=22% Similarity=0.173 Sum_probs=83.8
Q ss_pred HhhhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCccc--ccCCC
Q psy1107 73 FVNQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDI--LNQVP 147 (218)
Q Consensus 73 ~~~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~--~~~~~ 147 (218)
++....++.+|||+|||+|..+..++... +..+++++|+++.+++.|++++...+ .++.++.+|+.+..- ....+
T Consensus 62 ~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~ 141 (234)
T PLN02781 62 MLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDP 141 (234)
T ss_pred HHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCC
Confidence 33556678899999999999888887653 45799999999999999999876554 468899998865210 01112
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
.++||+|++.. .......++..+.++|+|||.+++-
T Consensus 142 ~~~fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 142 KPEFDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCCCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 45899998742 2245667889999999999988873
|
|
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=92.10 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=81.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC--------------------------
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS-------------------------- 128 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~-------------------------- 128 (218)
.....+..+|||||.+|.++..+++.+-...+.|+||++..+..|+.+......
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 445678899999999999999999886557899999999999999987542110
Q ss_pred ----------CceEEeccCC--CcccccCCCCCcccEEEechhhcCCC----cchHHHHHHHHHHhccCCeEEEEE
Q psy1107 129 ----------KMNVFPCDVT--EDDILNQVPHNSVDIATLIFVLSAIH----PNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 129 ----------~i~~~~~d~~--~~~~~~~~~~~~~D~i~~~~~l~~~~----~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
++.|...+.. ..++ ..+....||+|+|..+-.+++ ++.+..++.++.++|.|||+|++-
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~df-l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDF-LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccccCCcchhcccccEEEecchh-hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 1111111110 0011 133456899999977654432 467889999999999999999983
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.4e-11 Score=91.67 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=78.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.....+|||+|||+|.++..++...+..+++++|+++.+++.++.+. .++.+++.|+.+. . ...+||+|++
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~----~-~~~kFDlIIs 132 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEF----E-SNEKFDVVIS 132 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhh----c-ccCCCcEEEE
Confidence 33457999999999999988877654569999999999999998864 3678889988762 1 2358999999
Q ss_pred chhhcCCCcchH------------------HHHHHHHHHhccCCeEEEEE
Q psy1107 157 IFVLSAIHPNKF------------------STVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 157 ~~~l~~~~~~~~------------------~~~l~~~~~~Lk~gG~li~~ 188 (218)
+-.+.+.++.+. ..++.....+|+|+|.+++.
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 877776654322 34556668889999976664
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.5e-12 Score=93.90 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=77.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||||||+|..+..++.. ++...|+++|.++...+.|+++....+ .++.+.++|.... ......||
T Consensus 68 L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g----~~~~apfD 143 (209)
T PF01135_consen 68 LDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG----WPEEAPFD 143 (209)
T ss_dssp TTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT----TGGG-SEE
T ss_pred HhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc----cccCCCcC
Confidence 44678999999999999999988876 555689999999999999999877655 4899999987652 12235899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.|++......+| ..+.+.|++||+|++.-.
T Consensus 144 ~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 144 RIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred EEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 999987665443 335678999999999654
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=91.69 Aligned_cols=109 Identities=21% Similarity=0.244 Sum_probs=81.7
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
...+||||||.|.++..+|...|+..++|+|++...+..+..++...+ .|+.++++|+.... ..-++++++|.|+..+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l-~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELL-RRLFPPGSVDRIYINF 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHH-HHHSTTTSEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHH-hhcccCCchheEEEeC
Confidence 348999999999999999999999999999999999999988766544 79999999987631 1234567999999866
Q ss_pred hhcCCCcch------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIHPNK------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~~~~------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.--+.-... ...++..+.++|+|||.|.+.+
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 433322111 2478899999999999999865
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-11 Score=97.13 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=76.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|.++..+++..+ ...|+++|+++.+++.|++++...+ .++.++..|+... .....+||+
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~----~~~~~~fD~ 152 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG----VPEFAPYDV 152 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc----ccccCCccE
Confidence 345678999999999999999987653 2479999999999999998765444 5688888887542 222347999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++...+.++ ...+.+.|+|||.+++..
T Consensus 153 Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 153 IFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 9986443332 334678899999988854
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.2e-11 Score=92.91 Aligned_cols=111 Identities=14% Similarity=0.055 Sum_probs=81.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|..+..++... +...++++|+++.+++.+++++...+ .++.+.+.|.... ....++||
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~----~~~~~~fD 142 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF----GAAVPKFD 142 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh----hhhccCCC
Confidence 445677899999999999999988764 23589999999999999998876655 4678888887542 22234699
Q ss_pred EEEechhhcC------C-------Ccc-------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSA------I-------HPN-------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~------~-------~~~-------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.|++...... - .++ ....++..+.++|||||.|+.+.
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9987332111 1 111 23468899999999999998875
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.6e-11 Score=87.96 Aligned_cols=108 Identities=14% Similarity=0.093 Sum_probs=84.5
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCc-eEEeccCCCcccccC----CCCCcccEEE
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKM-NVFPCDVTEDDILNQ----VPHNSVDIAT 155 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i-~~~~~d~~~~~~~~~----~~~~~~D~i~ 155 (218)
+|||||||+|..+..++...|.......|.+...+..........+ .|+ .-+..|+........ ....+||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5999999999999999999999899999999988655555433222 232 344567776533221 2345899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|..++|-++.+....++..+.++|++||.|+++.
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 9999999988889999999999999999999954
|
The function of this family is unknown. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.4e-11 Score=98.12 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=84.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++...+ .++.+.+.|.... .....++||
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l---~~~~~~~fD 309 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERL---TEYVQDTFD 309 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhh---hhhhhccCC
Confidence 445677899999999999999988763 45699999999999999999876555 4578888887652 112345799
Q ss_pred EEEechhhcCC------C-------c-------chHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAI------H-------P-------NKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~------~-------~-------~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.|++....... | + ..+..++..+.++|||||.++++.-
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 99973322111 1 1 1235778999999999999988763
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.1e-11 Score=86.93 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=69.2
Q ss_pred EEEeCCHHHHHHHHhCCccc----CCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCC
Q psy1107 107 HACDISPRAVNFFKLNPLYD----ASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG 182 (218)
Q Consensus 107 ~~~D~s~~~~~~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g 182 (218)
+|+|+|+.+++.|+++.... ..++.++++|+.+ .++++++||+|++..++++++ +...+++++.++||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID----LPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh----CCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcC
Confidence 48999999999997654321 2468999999977 567778999999999999984 7889999999999999
Q ss_pred eEEEEEecCCCc
Q psy1107 183 GIILFRDYGLHD 194 (218)
Q Consensus 183 G~li~~~~~~~~ 194 (218)
|.|++.++...+
T Consensus 75 G~l~i~d~~~~~ 86 (160)
T PLN02232 75 SRVSILDFNKSN 86 (160)
T ss_pred eEEEEEECCCCC
Confidence 999999987654
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=96.44 Aligned_cols=115 Identities=15% Similarity=0.114 Sum_probs=82.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceE--EeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNV--FPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~--~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|..+..++...+..+++++|+++.+++.++.+.+..+..+.+ ..+|..... ...+.++||
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~--~~~~~~~fD 311 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS--QWAENEQFD 311 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc--ccccccccC
Confidence 3455778999999999999999988765679999999999999999887655533333 445543311 111345799
Q ss_pred EEEec------hhhcCCCc-------c-------hHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 153 IATLI------FVLSAIHP-------N-------KFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 153 ~i~~~------~~l~~~~~-------~-------~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.|++. ++++..|. + .+..++..+.++|||||.|+++.-.
T Consensus 312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99863 23333331 0 1467899999999999999987633
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=96.90 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=84.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++...+ .++.+++.|+...........++||.
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence 34567899999999999999998763 34699999999999999998876655 46889999887631101123458999
Q ss_pred EEech------hhcCCCc-------ch-------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIF------VLSAIHP-------NK-------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~------~l~~~~~-------~~-------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++.. ++.+-+. ++ +..++..+.++|||||.|++++
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99732 2332221 11 4688999999999999998765
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=96.39 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=83.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|..+..++... ...+++++|+++.+++.+++++...+ .++.+.+.|+... . +..+||
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~----~-~~~~fD 320 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF----S-PEEQPD 320 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc----c-cCCCCC
Confidence 344567899999999999998887653 33599999999999999998876555 4688888887652 1 345799
Q ss_pred EEEech------hhcC-------CCcc-------hHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 153 IATLIF------VLSA-------IHPN-------KFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 153 ~i~~~~------~l~~-------~~~~-------~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
+|++.. ++.. ..++ .+..++..+.++|+|||.|++..-..
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999631 1111 1111 23468999999999999999977443
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.1e-11 Score=90.05 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=87.2
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC-CceEEeccCCCcccccCC-CCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS-KMNVFPCDVTEDDILNQV-PHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~-~~~~~D~i~~~~ 158 (218)
..+||||||.|.+...+|..+|+..++|+|+....+..|...+...+. |+.+++.|+... ...+ ++++.|-|+..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~--l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEV--LDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHH--HHhcCCCCCeeEEEEEC
Confidence 589999999999999999999999999999999999999998887776 999999998763 2333 445999999866
Q ss_pred hhcCCCc-c-----hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIHP-N-----KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~~-~-----~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.--+.-. . ....++..+.+.|+|||.|.+.+
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5333211 1 13478899999999999999965
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=92.36 Aligned_cols=110 Identities=17% Similarity=0.267 Sum_probs=79.9
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCC--------cccCCCceEEeccCCCcccccCCCC
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNP--------LYDASKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~--------~~~~~~i~~~~~d~~~~~~~~~~~~ 148 (218)
..++.+||++|||.|..+..+++..+..+++++|+++.+++.|+... .....++.++..|.... .....
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f---L~~~~ 224 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF---LSSPS 224 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH---HHhcC
Confidence 35567999999999999988887655569999999999999999631 11246889999988752 12234
Q ss_pred CcccEEEechhhc--C-CCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLS--A-IHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~--~-~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++||+|++...-. . ...--...+++.+++.|+|||++++..
T Consensus 225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 5899999863210 0 000112568899999999999988864
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=91.52 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=79.8
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----cCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----DASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.++.+||+||||.|..+..+++..+..+++.+|+++.+++.+++.+.. ...++.++..|.... ....+.++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~--l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF--LKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH--HhhccCCCCC
Confidence 467899999999999999998764345899999999999999987542 235799999987541 1223345899
Q ss_pred EEEechhhcCCCcc--hHHHHHHHHHHhccCCeEEEE
Q psy1107 153 IATLIFVLSAIHPN--KFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 153 ~i~~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~li~ 187 (218)
+|++...-...++. -...+++.+.+.|+|||.++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99985432222111 134688999999999998876
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-10 Score=96.11 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=82.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++...+ .++.+++.|+.... ..++ ++||+
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~--~~~~-~~fD~ 323 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH--EKFA-EKFDK 323 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc--chhc-ccCCE
Confidence 34567899999999999999998764 55799999999999999998876555 46889999986621 1233 57999
Q ss_pred EEechhhcCC------C-------cch-------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAI------H-------PNK-------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~------~-------~~~-------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++....... | +.+ ...++..+.++|||||.|++..
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 9975321111 1 111 2467899999999999999654
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=87.46 Aligned_cols=110 Identities=13% Similarity=0.205 Sum_probs=86.8
Q ss_pred HHhhhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEe-ccCCCcccccCCC
Q psy1107 72 EFVNQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFP-CDVTEDDILNQVP 147 (218)
Q Consensus 72 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~-~d~~~~~~~~~~~ 147 (218)
.++....++.+|||||.+.|..++.|+...| +.+++++|.+++..+.|+++++..+ .++..+. +|..+. .....
T Consensus 52 ~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~--l~~~~ 129 (219)
T COG4122 52 RLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV--LSRLL 129 (219)
T ss_pred HHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH--HHhcc
Confidence 3335566889999999999999999998877 7899999999999999999977655 3466776 465542 12244
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
.++||+|+.- ..+.+...+++.+.++|+|||++++-
T Consensus 130 ~~~fDliFID-----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 130 DGSFDLVFID-----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred CCCccEEEEe-----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 5799999973 23357788999999999999987773
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-11 Score=91.39 Aligned_cols=111 Identities=19% Similarity=0.264 Sum_probs=81.7
Q ss_pred HHHHHh--hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC
Q psy1107 69 EFHEFV--NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV 146 (218)
Q Consensus 69 ~~~~~~--~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 146 (218)
.+.+++ ....+..++||+|||+|-.+..+.... .+++|+|+|..|++.|.++-... ...+.+... +....
T Consensus 113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD----~L~~Aea~~--Fl~~~ 184 (287)
T COG4976 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYD----TLYVAEAVL--FLEDL 184 (287)
T ss_pred HHHHHHHhccCCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchH----HHHHHHHHH--Hhhhc
Confidence 344444 334457899999999999998887654 38999999999999998873211 111222211 11223
Q ss_pred CCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 147 PHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
...+||+|++..|+.++ .....++--+...|+|||.|.++.
T Consensus 185 ~~er~DLi~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 185 TQERFDLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred cCCcccchhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEe
Confidence 34589999999999999 588899999999999999999975
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.7e-11 Score=88.46 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=84.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcc--cccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDD--ILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~--~~~~~~~~ 149 (218)
....++.+||||||++|..+..++...| +.+++.+|.++...+.|++.+...+ .++.++.+|..+.. +...-+.+
T Consensus 41 ~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 41 VRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred HHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 4456788999999999999999998754 5799999999999999998866544 57999999876521 11112235
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+||+|+.-. .......+++.+.++|+|||.+++-.
T Consensus 121 ~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 121 QFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp SEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred ceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 899999743 34678889999999999999877743
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-10 Score=86.60 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=81.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCccc-ccCCCCCcccEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDI-LNQVPHNSVDIA 154 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~-~~~~~~~~~D~i 154 (218)
.++..|||+|||+|..+..++...|...++++|.|+.++..|.+|+.... +.+.+++.+.+.+.. ..+...+++|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 34558999999999999999988888999999999999999999976544 456666554444322 234566899999
Q ss_pred EechhhcCCCcch--------------------------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNK--------------------------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~--------------------------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+++-. +++.++ ...++.-+.++|+|||.+.+.-
T Consensus 227 vsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 227 VSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred ecCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 98432 111111 3366777889999999888754
|
|
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-10 Score=84.85 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=83.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
...+.-|||||||+|..+..+...+ -..+|+|+|+.|++.|.+.- ..-.++.+|+-. -.+++.++||.+++
T Consensus 48 ~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~e----~egdlil~DMG~---GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 48 GPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVERE----LEGDLILCDMGE---GLPFRPGTFDGVIS 118 (270)
T ss_pred CCCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHhh----hhcCeeeeecCC---CCCCCCCccceEEE
Confidence 3357899999999999998887666 48999999999999999631 123567777765 36888999999988
Q ss_pred chhhcCC---C------cchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 157 IFVLSAI---H------PNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 157 ~~~l~~~---~------~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
...+.++ . ......++..++..|++|+..++--|..++..
T Consensus 119 ISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q 167 (270)
T KOG1541|consen 119 ISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQ 167 (270)
T ss_pred eeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHH
Confidence 6554433 1 11244678889999999999988776655554
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-10 Score=94.89 Aligned_cols=113 Identities=17% Similarity=0.102 Sum_probs=80.1
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCCCccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
...++.+|||+|||+|.++..++..+ ..+++++|+|+.+++.+++++..++ .++.++++|+.+..........+||
T Consensus 217 ~~~~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 217 RYVENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred HhcCCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 34567899999999999988766544 3499999999999999999876554 3688999998652100111234799
Q ss_pred EEEechhhcCCCc-------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHP-------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~-------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++.-....-.. .....++..+.++|+|||.|++.+
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9998643211111 134456667889999999988754
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-10 Score=85.92 Aligned_cols=99 Identities=13% Similarity=0.157 Sum_probs=73.7
Q ss_pred CCcEEEEecCCCchhHHHHhhcC---CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS---KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~---~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.+.+|||+|||+|.++..++... +..+++++|+++.+++.|+.+.. ++.+.+.|+... .+ .++||+|+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----~~~~~~~D~~~~----~~-~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----EATWINADALTT----EF-DTLFDMAI 119 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----CCEEEEcchhcc----cc-cCCccEEE
Confidence 46799999999999999887652 34699999999999999997743 578888888652 22 34899999
Q ss_pred echhhcCCCc----------chHHHHHHHHHHhccCCeEEEE
Q psy1107 156 LIFVLSAIHP----------NKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 156 ~~~~l~~~~~----------~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
++-.+.-... .....++..+.+++++|+. ++
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 9665442221 1144688888887777775 44
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-10 Score=90.55 Aligned_cols=108 Identities=14% Similarity=0.071 Sum_probs=77.6
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-----CCCceEEeccCCCcccccCCCCCcccE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-----ASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
++.+||++|||+|..+..++...+..+++++|+++.+++.+++..... ..++.++..|.... .....++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~---l~~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF---LADTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH---HHhCCCCccE
Confidence 455999999999999988887654568999999999999999865321 24677777765431 1112358999
Q ss_pred EEechhhcCCCcch--HHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNK--FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~--~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++.......+... ...+++.+.+.|+|||.+++..
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 99854321111112 4578899999999999998853
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-10 Score=95.80 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=77.6
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..++.+|||+|||+|.++..++... .+++++|+|+.+++.|++++...+ .++.+..+|+.+.....++...+||+|+
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 3566899999999999999998876 489999999999999999876544 5799999998652111123345799998
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.- |.......+..+.+ ++|+++++++.
T Consensus 373 ~dP-----Pr~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 373 LDP-----PRAGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred ECc-----CCcChHHHHHHHHh-cCCCeEEEEEe
Confidence 742 22233455555544 68999988876
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=85.52 Aligned_cols=113 Identities=19% Similarity=0.184 Sum_probs=74.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC----CCceEEeccCCCcccccCCCCCcc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA----SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
...++.+|||+|||+|..++.++......+|+..|.++ .+..++.+...+. .++.+...|..+..........+|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 34578899999999999999998874456999999998 8888888765432 577888887755321112334589
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|+|++..+++.- +....++..+.++|+++|.+++..-.
T Consensus 121 D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 121 DVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred CEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999999998754 68889999999999999986665433
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-09 Score=81.05 Aligned_cols=103 Identities=21% Similarity=0.447 Sum_probs=64.6
Q ss_pred cccchHHHHHHh---hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC
Q psy1107 63 RNWTVNEFHEFV---NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE 139 (218)
Q Consensus 63 ~~~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~ 139 (218)
..|....+..++ ...++...|-|+|||.+.++..+... ..|..+|+-. .+-.+..||+.+
T Consensus 53 ~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~---~~V~SfDLva--------------~n~~Vtacdia~ 115 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK---HKVHSFDLVA--------------PNPRVTACDIAN 115 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS---------------SSTTEEES-TTS
T ss_pred hcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC---ceEEEeeccC--------------CCCCEEEecCcc
Confidence 355554444444 44455679999999999998665322 3799999733 234577899977
Q ss_pred cccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 140 DDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 140 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.|+++++.|++++.-.|..- ++..++.++.|+|||||.|.+.+
T Consensus 116 ----vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 116 ----VPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp -----S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----CcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEE
Confidence 67888999999987666555 78999999999999999999987
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.9e-10 Score=80.99 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=71.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+ .+++++|+++.+++.++++... ..++.+++.|+.+ ..++..++|.|++
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~----~~~~~~~~d~vi~ 83 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALK----FDLPKLQPYKVVG 83 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhc----CCccccCCCEEEE
Confidence 3456799999999999999999874 5999999999999999988653 3578899999877 3344446899987
Q ss_pred chhhcCCCcchHHHHHHHHHHh--ccCCeEEEE
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIM--LKSGGIILF 187 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~--Lk~gG~li~ 187 (218)
+-.+ +. ...++..+.+. +.++|.+++
T Consensus 84 n~Py-~~----~~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 84 NLPY-NI----STPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred CCCc-cc----HHHHHHHHHhcCCCcceEEEEE
Confidence 5433 22 22334444332 347777766
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-10 Score=101.18 Aligned_cols=114 Identities=12% Similarity=0.114 Sum_probs=83.7
Q ss_pred HHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCC
Q psy1107 72 EFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 72 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~ 148 (218)
..+....++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.+++++..++ .++.++++|+.+. .... .
T Consensus 531 ~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~--l~~~-~ 606 (702)
T PRK11783 531 RMIGQMAKGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW--LKEA-R 606 (702)
T ss_pred HHHHHhcCCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH--HHHc-C
Confidence 3334445678999999999999999998653 379999999999999999976544 3689999998652 1112 3
Q ss_pred CcccEEEechhhcCCC---------cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSAIH---------PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~---------~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+||+|++.-....-. ..+...++..+.++|+|||.+++..
T Consensus 607 ~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 607 EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 5899999853210000 1235677888899999999998855
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-10 Score=85.09 Aligned_cols=103 Identities=18% Similarity=0.128 Sum_probs=85.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....++.+|+|.|.|+|.++..++.. +|..+++.+|+.+...+.|++|+...+ .++.+...|+.+. .... .|
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~----~~~~-~v 164 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG----IDEE-DV 164 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc----cccc-cc
Confidence 56789999999999999999999864 777899999999999999999976533 3488888888773 2223 89
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|.|++ .+| ++..+++.+..+|+|||.+++..
T Consensus 165 Dav~L-----Dmp--~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 165 DAVFL-----DLP--DPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred CEEEE-----cCC--ChHHHHHHHHHHhCCCcEEEEEc
Confidence 99996 344 67789999999999999998865
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.5e-10 Score=83.16 Aligned_cols=108 Identities=10% Similarity=-0.007 Sum_probs=76.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|.++..++..+. .+++++|.++.+++.++++++..+ .++.+++.|+.+. ......+||+|++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~---l~~~~~~fDlV~~ 127 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF---LAQPGTPHNVVFV 127 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH---HhhcCCCceEEEE
Confidence 4567999999999999987665554 599999999999999998866544 4688989887652 1112346999998
Q ss_pred chhhcCCCcchHHHHHHHHHH--hccCCeEEEEEecCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFI--MLKSGGIILFRDYGL 192 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~--~Lk~gG~li~~~~~~ 192 (218)
.-.+.. .....++..+.. +|+|+|++++.....
T Consensus 128 DPPy~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 128 DPPFRK---GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CCCCCC---ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 644211 233445555544 478999888876543
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-10 Score=87.37 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=85.5
Q ss_pred HHhhhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCccccc--CC
Q psy1107 72 EFVNQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILN--QV 146 (218)
Q Consensus 72 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~--~~ 146 (218)
.++....++.+|||+|+++|..+..++... +..+++++|.+++..+.|+++++..+ .++.++.+|+.+..-.. .-
T Consensus 111 ~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~ 190 (278)
T PLN02476 111 AMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNG 190 (278)
T ss_pred HHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcc
Confidence 333556678999999999999999998764 35689999999999999999876555 47999999876521000 11
Q ss_pred CCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 147 PHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
..++||+|+... +......+++.+.++|+|||.+++-
T Consensus 191 ~~~~FD~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 191 EGSSYDFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred cCCCCCEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 135899999742 3356788999999999999988773
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-10 Score=101.31 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=79.0
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-----------------CCceEEeccCCCccc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-----------------SKMNVFPCDVTEDDI 142 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-----------------~~i~~~~~d~~~~~~ 142 (218)
+.+|||+|||+|..++.++...+..+++++|+|+.+++.|+.|+..++ .++.+++.|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~- 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC- 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc-
Confidence 468999999999999999988877799999999999999998865321 36899999986521
Q ss_pred ccCCCCCcccEEEechh--------------hcCCC-------------------c---chHHHHHHHHHHhccCCeEEE
Q psy1107 143 LNQVPHNSVDIATLIFV--------------LSAIH-------------------P---NKFSTVVKNLFIMLKSGGIIL 186 (218)
Q Consensus 143 ~~~~~~~~~D~i~~~~~--------------l~~~~-------------------~---~~~~~~l~~~~~~Lk~gG~li 186 (218)
.-...+||+|+++-. ..+-| . +.+.+++..+.++|+|||.++
T Consensus 198 --~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 198 --RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred --cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 101136999998321 10100 0 113678888899999999888
Q ss_pred EEec
Q psy1107 187 FRDY 190 (218)
Q Consensus 187 ~~~~ 190 (218)
+-..
T Consensus 276 lEiG 279 (1082)
T PLN02672 276 FNMG 279 (1082)
T ss_pred EEEC
Confidence 7543
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=82.73 Aligned_cols=107 Identities=19% Similarity=0.271 Sum_probs=80.7
Q ss_pred chHHHHHHhhhc-------CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCC
Q psy1107 66 TVNEFHEFVNQD-------VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVT 138 (218)
Q Consensus 66 ~~~~~~~~~~~~-------~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~ 138 (218)
...++..++... ....++||||+|.|..+..++..+. +|++.|.|+.|....+++ ...++.. .
T Consensus 74 S~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k------g~~vl~~--~ 143 (265)
T PF05219_consen 74 SEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK------GFTVLDI--D 143 (265)
T ss_pred cHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC------CCeEEeh--h
Confidence 345666665222 2567899999999999999988774 899999999999888875 2222222 1
Q ss_pred CcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 139 EDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 139 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+ + .. .+.+||+|.|..++.-. +.+..+++.+++.|+|+|+++++
T Consensus 144 ~--w-~~-~~~~fDvIscLNvLDRc--~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 144 D--W-QQ-TDFKFDVISCLNVLDRC--DRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred h--h-hc-cCCceEEEeehhhhhcc--CCHHHHHHHHHHHhCCCCEEEEE
Confidence 1 1 11 13479999999998866 57889999999999999999984
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.9e-10 Score=85.02 Aligned_cols=107 Identities=17% Similarity=0.124 Sum_probs=80.4
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....|+.+|||.|.|+|.++..++.. +|..+|+.+|+.+...+.|+++++..+ .++.+.+.|+....+.... +..+
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~~~~ 114 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL-ESDF 114 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT--TTSE
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc-cCcc
Confidence 66789999999999999999999865 688899999999999999999977654 5799999999763331122 3579
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhc-cCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIML-KSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~L-k~gG~li~~~ 189 (218)
|.|++- +| ++-..+..+.+.| ++||.+++..
T Consensus 115 DavfLD-----lp--~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 115 DAVFLD-----LP--DPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp EEEEEE-----SS--SGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred cEEEEe-----CC--CHHHHHHHHHHHHhcCCceEEEEC
Confidence 999873 43 4556788899999 8999998865
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=93.39 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=79.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCC--c------ccCCCceEEeccCCCcccccCCCCC
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNP--L------YDASKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~--~------~~~~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
+++.+|||+|||+|..+..+++..+..+++++|+++.+++.++++. . ..+++++++..|..+. .....+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~---l~~~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW---LRKLAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH---HHhCCC
Confidence 4678999999999999999987543369999999999999999842 1 1225788899987652 111235
Q ss_pred cccEEEechhhcCCCc---chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHP---NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~---~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+||+|++.......+. --...+++.+.+.|+|||.+++..
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 8999998643221110 012357889999999999988854
|
|
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.8e-10 Score=88.58 Aligned_cols=106 Identities=21% Similarity=0.250 Sum_probs=77.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.+..+++.|||+|||+|.++...|+.+. .+|+++|.|.-+ +.|.+....++ ..+.++++.+.+. .+|..+.|
T Consensus 56 ~~lf~dK~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi----~LP~eKVD 129 (346)
T KOG1499|consen 56 KHLFKDKTVLDVGCGTGILSMFAAKAGA-RKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI----ELPVEKVD 129 (346)
T ss_pred hhhcCCCEEEEcCCCccHHHHHHHHhCc-ceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE----ecCcccee
Confidence 3456789999999999999999999985 599999987655 77766655444 3578888887773 44456899
Q ss_pred EEEechhhcCCC-cchHHHHHHHHHHhccCCeEEE
Q psy1107 153 IATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIIL 186 (218)
Q Consensus 153 ~i~~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li 186 (218)
+|++.+.-+++- .+.+..++----++|+|||.++
T Consensus 130 iIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 130 IIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 999977655553 2234444444468999999665
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=79.40 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=62.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.-.+.+|+|+|||+|.+++..+..++ ..|+++|+++++++.++++......++.|+++|+.+. .+.+|.++.
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~-------~~~~dtvim 114 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF-------RGKFDTVIM 114 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc-------CCccceEEE
Confidence 44677899999999999999988887 4999999999999999999887778999999999773 235676666
Q ss_pred c
Q psy1107 157 I 157 (218)
Q Consensus 157 ~ 157 (218)
+
T Consensus 115 N 115 (198)
T COG2263 115 N 115 (198)
T ss_pred C
Confidence 4
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=87.42 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=73.2
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+|||+|||+|.++..++..+ .+++++|+++.+++.|++++...+ .++.|++.|+.+.. ....+.||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~---~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA---TAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH---HhcCCCCeEEEEC
Confidence 56899999999999999999865 599999999999999998876554 47899999986521 1123469999975
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
-. .......+..+...+.|+++++++.
T Consensus 248 PP-----r~G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 248 PP-----RRGIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CC-----CCCccHHHHHHHHHcCCCeEEEEEC
Confidence 22 1222222333344468888888876
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.9e-09 Score=74.80 Aligned_cols=128 Identities=17% Similarity=0.148 Sum_probs=101.2
Q ss_pred cccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc
Q psy1107 63 RNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD 141 (218)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 141 (218)
..|+.+.+... .....+..|||+|.|+|.++..+++++ +...++++++|+..+....+... .++++.+|..+..
T Consensus 33 Ss~lA~~M~s~-I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----~~~ii~gda~~l~ 107 (194)
T COG3963 33 SSILARKMASV-IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----GVNIINGDAFDLR 107 (194)
T ss_pred cHHHHHHHHhc-cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC----CccccccchhhHH
Confidence 34555555554 344567899999999999999998874 44589999999999999998754 3558888877653
Q ss_pred -cccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 142 -ILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 142 -~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
.........||.|++.-.+-.+|.....++++.+...|.+||.++--.|++-+.
T Consensus 108 ~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~s~ 162 (194)
T COG3963 108 TTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPLSP 162 (194)
T ss_pred HHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCCc
Confidence 123455668999999888888888888899999999999999999999885544
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.6e-09 Score=84.08 Aligned_cols=110 Identities=23% Similarity=0.258 Sum_probs=86.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEec-cCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPC-DVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~-d~~~~~~~~~~~~~~~D 152 (218)
+...++..|||.-||||.+++...-.+ ++++|.|++..++.-++.|....+ ....+... |+++ .+++..++|
T Consensus 193 a~v~~G~~vlDPFcGTGgiLiEagl~G--~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~----lpl~~~~vd 266 (347)
T COG1041 193 ARVKRGELVLDPFCGTGGILIEAGLMG--ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN----LPLRDNSVD 266 (347)
T ss_pred hccccCCEeecCcCCccHHHHhhhhcC--ceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc----CCCCCCccc
Confidence 667788899999999999999987766 699999999999999999988775 45555554 8887 567777899
Q ss_pred EEEechhhcC---CC----cchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSA---IH----PNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~---~~----~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.|++--...- .. .+....+++.+.++|++||++++...
T Consensus 267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9998332111 11 13367888999999999999988764
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.1e-09 Score=79.58 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=92.2
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCc--cEEEEEeCCHHHHHHHHhCCcccC-CCc-eEEeccCCCcccccCCCCCcc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKI--CYIHACDISPRAVNFFKLNPLYDA-SKM-NVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~--~~v~~~D~s~~~~~~~~~~~~~~~-~~i-~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....+.+||||.||.|......+...|. .++...|+|+..++..++.++..+ .++ +|.+.|..+......+. ...
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~-p~P 210 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALD-PAP 210 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccC-CCC
Confidence 4467889999999999999888887765 589999999999999999877665 444 99999998864433332 257
Q ss_pred cEEEechhhcCCCcch-HHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNK-FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~-~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++++....++.+++.+ ....+..+...+.|||+|+...
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 9999999999998644 4567899999999999999866
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-09 Score=82.22 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=83.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCC-----
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQV----- 146 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~----- 146 (218)
....++.+|||||+++|..++.++... +..+++++|.++...+.|+.++...+ .++.++.+|..+. ...+
T Consensus 75 ~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~--L~~l~~~~~ 152 (247)
T PLN02589 75 LKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV--LDQMIEDGK 152 (247)
T ss_pred HHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH--HHHHHhccc
Confidence 555678899999999999999998764 46799999999999999998876544 6899999987652 1111
Q ss_pred CCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 147 PHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
..++||+|+.-. .......+++.+.++|+|||++++
T Consensus 153 ~~~~fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 153 YHGTFDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cCCcccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEE
Confidence 125899999742 235677888889999999998776
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-09 Score=86.39 Aligned_cols=123 Identities=11% Similarity=0.105 Sum_probs=82.7
Q ss_pred hccCCCcccchHHHHHHhh---hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceE
Q psy1107 57 TKFFKDRNWTVNEFHEFVN---QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNV 132 (218)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~ 132 (218)
..|++......+.+...+. ...++.+|||++||+|.++..++..+ .+++++|+++.+++.++.+++..+ .++.|
T Consensus 208 ~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~~~~~~~~ 285 (374)
T TIGR02085 208 QSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQMLGLDNLSF 285 (374)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHcCCCcEEE
Confidence 3444544444444433321 12355799999999999999998655 589999999999999999876554 47899
Q ss_pred EeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 133 FPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 133 ~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..+|+.+.. .. ...+||+|++.-.-..+ ...++..+. .++|++++++..
T Consensus 286 ~~~d~~~~~--~~-~~~~~D~vi~DPPr~G~----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 286 AALDSAKFA--TA-QMSAPELVLVNPPRRGI----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred EECCHHHHH--Hh-cCCCCCEEEECCCCCCC----cHHHHHHHH-hcCCCeEEEEEe
Confidence 999986521 11 12359999875322212 234445454 468999988877
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-09 Score=88.40 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=75.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..++.+|||+|||+|.++..++... .+++++|+++.+++.|+.++...+ .++.++.+|+.+..........+||+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 3456799999999999999998765 489999999999999999876544 5799999998652100112344799998
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.-.-.. ....+++.+.+ ++|+++++++.
T Consensus 368 ~dPPr~G----~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 368 LDPPRKG----CAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred ECcCCCC----CCHHHHHHHHh-cCCCEEEEEcC
Confidence 6422111 12455555443 78999887765
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.6e-09 Score=83.02 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=78.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-----CCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-----ASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.++.+||.+|+|.|..+..+++..+..+++++|+++.+++.+++.+... +.++.++..|.... .....++||
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~---L~~~~~~yD 178 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE---LEKRDEKFD 178 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH---HhhCCCCcc
Confidence 3567999999999999998887655568999999999999999886532 36788999987762 222345899
Q ss_pred EEEechhhcC---CCcc--hHHHHHH-HHHHhccCCeEEEEE
Q psy1107 153 IATLIFVLSA---IHPN--KFSTVVK-NLFIMLKSGGIILFR 188 (218)
Q Consensus 153 ~i~~~~~l~~---~~~~--~~~~~l~-~~~~~Lk~gG~li~~ 188 (218)
+|++... .. .++. -...+++ .+.+.|+|||++++.
T Consensus 179 vIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 179 VIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9998521 11 1110 1235676 789999999988764
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-08 Score=75.06 Aligned_cols=97 Identities=22% Similarity=0.197 Sum_probs=79.0
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEechhh
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVL 160 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l 160 (218)
+++|+|+|.|.-++.++-..|+.+++.+|.+.+.+...+......+ .|+.+++..+.+ .....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-----~~~~~~fd~v~aRAv- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-----PEYRESFDVVTARAV- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-----TTTTT-EEEEEEESS-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-----cccCCCccEEEeehh-
Confidence 8999999999999999999999999999999999988887766555 679999988765 233458999999644
Q ss_pred cCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 161 SAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.....++..+..++++||.+++.-
T Consensus 125 -----~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -----APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -----SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -----cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 356788899999999999998865
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1331|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-09 Score=79.58 Aligned_cols=132 Identities=23% Similarity=0.367 Sum_probs=98.2
Q ss_pred HHHHHhhhccCCCcccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCC
Q psy1107 50 LFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASK 129 (218)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~ 129 (218)
..|..-...|..++....+....++.....+..++|+|||.|-.+. ..|.+.++++|++...+..+++. ..
T Consensus 16 ~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~-----~~ 86 (293)
T KOG1331|consen 16 SIYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS-----GG 86 (293)
T ss_pred HHHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC-----CC
Confidence 3555555555556555555555665555668899999999997762 23777999999999888877654 11
Q ss_pred ceEEeccCCCcccccCCCCCcccEEEechhhcCCCc-chHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 130 MNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHP-NKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 130 i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~-~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.....+|+.+ .++...+||.++...++||+.. .....+++++.+.|+|||...+..+....
T Consensus 87 ~~~~~ad~l~----~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 87 DNVCRADALK----LPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred ceeehhhhhc----CCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 1566678777 6777889999999999999974 45668999999999999998887655433
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.92 E-value=7e-09 Score=77.21 Aligned_cols=107 Identities=13% Similarity=0.026 Sum_probs=74.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCC-CCC-ccc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQV-PHN-SVD 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~-~~~-~~D 152 (218)
..++.++||++||+|.++..++.++. .+++++|.++.+++.+++++...+ .++.++..|+.... ... ... .+|
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l--~~~~~~~~~~d 123 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL--KFLAKKPTFDN 123 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH--HHhhccCCCce
Confidence 34678999999999999999999875 389999999999999998876544 36788899885421 111 122 367
Q ss_pred EEEechhhcCCCcchHHHHHHHHH--HhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLF--IMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~--~~Lk~gG~li~~~ 189 (218)
+|+..-.+.. .....++..+. .+|+++|++++-.
T Consensus 124 vv~~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 124 VIYLDPPFFN---GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEEECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 7776433221 23344454443 4688888777644
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.1e-09 Score=85.92 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=76.4
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
..+|||++||+|..++.++...+..+|+++|+++.+++.++.+++.++ .++.+.+.|+.... .. ...||+|++.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l--~~--~~~fD~V~lD- 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL--HE--ERKFDVVDID- 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH--hh--cCCCCEEEEC-
Confidence 358999999999999999876544589999999999999999876554 45667888875421 11 3469999874
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+.....++..+.+.+++||++++..
T Consensus 133 -----P~Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 133 -----PFGSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -----CCCCcHHHHHHHHHHhcCCCEEEEEe
Confidence 22344567888788899999999974
|
|
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=73.22 Aligned_cols=112 Identities=18% Similarity=0.211 Sum_probs=82.5
Q ss_pred CcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
+..+||||||+|..+..+++. +|+..+.++|+++.+.+...+.+..+..++..+++|+.. .+..++.|+++.+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-----~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-----GLRNESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-----hhccCCccEEEECC
Confidence 678999999999999888866 577789999999999999887776666678888888765 33346889888743
Q ss_pred hhcCCCcc-------------------hHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 159 VLSAIHPN-------------------KFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 159 ~l~~~~~~-------------------~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
..---+++ ..++++.++-.+|.|.|.+++.....+...
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ 175 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPK 175 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHH
Confidence 21111111 134667777788899999998776555544
|
|
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.7e-09 Score=73.15 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=64.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
-.+.+++|+|||.|.+++......+ ..+.|+|+++++++.+..|+..-.-++.+++||+.+ ..+..+.||.++.+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~-e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdild----le~~~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKN-ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILD----LELKGGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCC-ceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccc----hhccCCeEeeEEec
Confidence 4688999999999999977765544 489999999999999999988766788999999988 44555789999875
Q ss_pred hhh
Q psy1107 158 FVL 160 (218)
Q Consensus 158 ~~l 160 (218)
-.+
T Consensus 122 ppF 124 (185)
T KOG3420|consen 122 PPF 124 (185)
T ss_pred CCC
Confidence 443
|
|
| >KOG2940|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-09 Score=80.28 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=92.4
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.....++||||+.|.....+...+- .+++.+|.|..+++.++.... ....+....+|-.. .++.++++|+|+..
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~qd-p~i~~~~~v~DEE~----Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDAQD-PSIETSYFVGDEEF----LDFKENSVDLIISS 144 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhccCC-CceEEEEEecchhc----ccccccchhhhhhh
Confidence 4467899999999999999988774 489999999999999987532 11345566666544 56888899999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchhhhcc
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRF 200 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~~~~ 200 (218)
..+|+. .+....+.++...|||+|.|+.+-++......+++
T Consensus 145 lslHW~--NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~ 185 (325)
T KOG2940|consen 145 LSLHWT--NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRC 185 (325)
T ss_pred hhhhhh--ccCchHHHHHHHhcCCCccchhHHhccccHHHHHH
Confidence 999988 47778889999999999999888788777776655
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=6e-09 Score=88.69 Aligned_cols=110 Identities=22% Similarity=0.254 Sum_probs=84.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.....+||||||.|.++..+|..+|+..++|+|++...+..+.......+ .|+.+.+.|+.. +...++++++|.|+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~--~~~~~~~~sv~~i~i 423 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL--ILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH--HHHhcCcccccEEEE
Confidence 34678999999999999999999999999999999998888877654433 578887776533 224477788999998
Q ss_pred chhhcCCCcc------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPN------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+.--+.-.. ....++..+.++|+|||.+.+.+
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 7653332111 12478899999999999998865
|
|
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=80.59 Aligned_cols=102 Identities=20% Similarity=0.191 Sum_probs=80.8
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
-...+|+|.|.|..+..+...+|. +-+++.+...+..+..... ..+..+-+|... . .| +-|+|++.++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq----~-~P--~~daI~mkWi 245 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQ----D-TP--KGDAIWMKWI 245 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc---CCcceecccccc----c-CC--CcCeEEEEee
Confidence 478999999999999999988774 6666666666655555432 227777777766 2 34 3579999999
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+||+++++..+++++++..|+|||.+++.+.-..
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 9999999999999999999999999999886333
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.3e-09 Score=83.93 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=83.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCCCcccE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...+++||++.|=||.++...+..+. .+++.+|.|..+++.|++|+..++ ..+.+++.|+.+-.-...-...+||+
T Consensus 215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 215 LAAGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred hccCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 34589999999999999999998774 399999999999999999977655 45789999986621111122348999
Q ss_pred EEechh-hcCCC------cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFV-LSAIH------PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~-l~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++--. +.--+ ..+...++..+.++|+|||.+++..
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 998321 11000 1345678888999999999999866
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=75.10 Aligned_cols=109 Identities=20% Similarity=0.193 Sum_probs=74.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccE---------EEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICY---------IHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDIL 143 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~---------v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~ 143 (218)
....++..+||..||+|.+.++.+....... ++|+|+++.+++.++.++...+ ..+.+.+.|+.+
T Consensus 24 a~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~---- 99 (179)
T PF01170_consen 24 AGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARE---- 99 (179)
T ss_dssp TT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGG----
T ss_pred hCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhh----
Confidence 4456778999999999999998877655444 8999999999999999876544 457888889887
Q ss_pred cCCCCCcccEEEechhhcCC-C-----cchHHHHHHHHHHhccCCeEEEE
Q psy1107 144 NQVPHNSVDIATLIFVLSAI-H-----PNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 144 ~~~~~~~~D~i~~~~~l~~~-~-----~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
.++..+++|.|++.-....- . ..-...+++.+.+++++...+++
T Consensus 100 l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 100 LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred cccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 34556689999985443221 1 01244677888899999444433
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.9e-09 Score=85.77 Aligned_cols=103 Identities=23% Similarity=0.226 Sum_probs=69.8
Q ss_pred CcEEEEecCCCchhHHHHhhcC----CccEEEEEeCCHHHHHHHHhCCc--ccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS----KICYIHACDISPRAVNFFKLNPL--YDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~----~~~~v~~~D~s~~~~~~~~~~~~--~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
+..|+|+|||+|.++...++.+ ...+|++++-++.++..++.... ..+.+|.++++|+++-. .+. ++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~----lpe-kvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE----LPE-KVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC----HSS--EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC----CCC-ceeE
Confidence 5789999999999987766553 23599999999988877654422 23468999999998833 233 8999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
|++-..-....-+.....+..+.+.|||+|+++=
T Consensus 262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred EEEeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 9985432222224455678888899999997663
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG3045|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-08 Score=75.64 Aligned_cols=90 Identities=21% Similarity=0.424 Sum_probs=69.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
........|.|+|||-+.++. .-+ -.|..+|+-+ .+-+++.||+.+ .++++++.|++
T Consensus 176 k~r~~~~vIaD~GCGEakiA~----~~~-~kV~SfDL~a--------------~~~~V~~cDm~~----vPl~d~svDva 232 (325)
T KOG3045|consen 176 KRRPKNIVIADFGCGEAKIAS----SER-HKVHSFDLVA--------------VNERVIACDMRN----VPLEDESVDVA 232 (325)
T ss_pred HhCcCceEEEecccchhhhhh----ccc-cceeeeeeec--------------CCCceeeccccC----CcCccCcccEE
Confidence 344566789999999988774 112 2788888722 356778899988 68888999999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
++.-.+..- ++..++.++.++|++||.|++.+.
T Consensus 233 V~CLSLMgt---n~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 233 VFCLSLMGT---NLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred EeeHhhhcc---cHHHHHHHHHHHhccCceEEEEeh
Confidence 876555443 788999999999999999999873
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-08 Score=80.43 Aligned_cols=82 Identities=13% Similarity=0.061 Sum_probs=59.8
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-C--CCceEEec-cCCCcccccC--CCCCccc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-A--SKMNVFPC-DVTEDDILNQ--VPHNSVD 152 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-~--~~i~~~~~-d~~~~~~~~~--~~~~~~D 152 (218)
+..++||||||+|.....++...+.++++++|+++.+++.|+.++..+ + .++.+... |..+ +... .+.+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~--i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA--IFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh--hhhcccccCCceE
Confidence 468999999999988877777666789999999999999999997765 2 35666543 2211 1112 2355899
Q ss_pred EEEechhhcC
Q psy1107 153 IATLIFVLSA 162 (218)
Q Consensus 153 ~i~~~~~l~~ 162 (218)
+|+|+-.++.
T Consensus 192 livcNPPf~~ 201 (321)
T PRK11727 192 ATLCNPPFHA 201 (321)
T ss_pred EEEeCCCCcC
Confidence 9999766543
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-09 Score=77.46 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=80.6
Q ss_pred HHHHHHhhhc-CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCccccc
Q psy1107 68 NEFHEFVNQD-VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILN 144 (218)
Q Consensus 68 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~ 144 (218)
+.+..++... -++.++||+.||+|.++.+.+.++. .+++.+|.++.++..++++.+..+ .++.++..|+.......
T Consensus 30 ealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~ 108 (183)
T PF03602_consen 30 EALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKL 108 (183)
T ss_dssp HHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHH
T ss_pred HHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhh
Confidence 3444444444 5789999999999999999999885 399999999999999999976554 34778888865421111
Q ss_pred CCCCCcccEEEechhhcCCCcch-HHHHHHHHH--HhccCCeEEEEEecC
Q psy1107 145 QVPHNSVDIATLIFVLSAIHPNK-FSTVVKNLF--IMLKSGGIILFRDYG 191 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~~~~~-~~~~l~~~~--~~Lk~gG~li~~~~~ 191 (218)
.....+||+|++.-.... .. ...++..+. .+|+++|.+++-...
T Consensus 109 ~~~~~~fDiIflDPPY~~---~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 109 AKKGEKFDIIFLDPPYAK---GLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HHCTS-EEEEEE--STTS---CHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred cccCCCceEEEECCCccc---chHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 113568999998533221 23 367777776 789999988875533
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.6e-08 Score=76.65 Aligned_cols=147 Identities=10% Similarity=0.026 Sum_probs=97.9
Q ss_pred HhhhhHhhHHHHHHHhhhccCCCc---ccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcC----CccEEEEEeCC
Q psy1107 40 IEQNKKKYWDLFYKRNETKFFKDR---NWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWS----KICYIHACDIS 112 (218)
Q Consensus 40 ~~~~~~~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~----~~~~v~~~D~s 112 (218)
|....-+.|+..... ..|+..+ ..+.+...+++....++..++|+|||+|.-+..++... ....|+++|+|
T Consensus 36 YD~~Gs~LFe~It~l--pEYYptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS 113 (319)
T TIGR03439 36 YDDEGLKLFEEITYS--PEYYLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVS 113 (319)
T ss_pred hcchHHHHHHHHHcC--CccCChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECC
Confidence 444555667764322 3333222 22333445555666777799999999998877666542 23589999999
Q ss_pred HHHHHHHHhCCc-ccCCCc--eEEeccCCCcccccC--CCCCcccEEEech-hhcCCCcchHHHHHHHHHH-hccCCeEE
Q psy1107 113 PRAVNFFKLNPL-YDASKM--NVFPCDVTEDDILNQ--VPHNSVDIATLIF-VLSAIHPNKFSTVVKNLFI-MLKSGGII 185 (218)
Q Consensus 113 ~~~~~~~~~~~~-~~~~~i--~~~~~d~~~~~~~~~--~~~~~~D~i~~~~-~l~~~~~~~~~~~l~~~~~-~Lk~gG~l 185 (218)
..+++.+..... ..-+.+ .-+++|+.+.....+ .......+++..+ .+.++++.....+++.+.+ .|+|||.|
T Consensus 114 ~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~l 193 (319)
T TIGR03439 114 RSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSF 193 (319)
T ss_pred HHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 999999998876 322344 447788766421111 1122346666654 7999999999999999999 99999988
Q ss_pred EEE
Q psy1107 186 LFR 188 (218)
Q Consensus 186 i~~ 188 (218)
++.
T Consensus 194 LiG 196 (319)
T TIGR03439 194 LIG 196 (319)
T ss_pred EEe
Confidence 884
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-08 Score=74.78 Aligned_cols=104 Identities=25% Similarity=0.378 Sum_probs=72.7
Q ss_pred HHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCC
Q psy1107 71 HEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 71 ~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~ 148 (218)
..+.....++.+|||+.||.|.+++.++...+...|+++|++|.+++.+++++..+. ..+..+++|..+. . +.
T Consensus 93 ~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~---~--~~ 167 (200)
T PF02475_consen 93 RRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF---L--PE 167 (200)
T ss_dssp HHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--------T
T ss_pred HHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh---c--Cc
Confidence 344445678899999999999999999985555689999999999999999876554 4577888887662 1 15
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEE
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGII 185 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l 185 (218)
+.+|-|++.. | .....++..+.+++++||.+
T Consensus 168 ~~~drvim~l-----p-~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 168 GKFDRVIMNL-----P-ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp T-EEEEEE-------T-SSGGGGHHHHHHHEEEEEEE
T ss_pred cccCEEEECC-----h-HHHHHHHHHHHHHhcCCcEE
Confidence 6899888742 2 23346888899999999865
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.5e-08 Score=75.96 Aligned_cols=109 Identities=16% Similarity=0.167 Sum_probs=81.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-----CCCceEEeccCCCcccccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-----ASKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
.+..+ .+||-||.|.|..++.+++..+..+++.+|+++..++.+++.+... .+++.++..|..+ +....+.
T Consensus 73 ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~--~v~~~~~- 148 (282)
T COG0421 73 AHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE--FLRDCEE- 148 (282)
T ss_pred hCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH--HHHhCCC-
Confidence 34444 6999999999999999999887779999999999999999975532 2677888888765 2222333
Q ss_pred cccEEEechhhcCCCcc---hHHHHHHHHHHhccCCeEEEEE
Q psy1107 150 SVDIATLIFVLSAIHPN---KFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~---~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+||+|++...-. ..|. --..+++.+.+.|+++|+++..
T Consensus 149 ~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 149 KFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 899999843211 1111 1257899999999999988886
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=71.17 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=79.0
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCc-ccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNS-VDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~-~D~i~~~ 157 (218)
+.+++|||+|.|.-++.++-..|+.+++.+|...+.+...+......+ .|+++++..+.+.. . ... ||+|++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~----~-~~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG----Q-EKKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc----c-ccccCcEEEee
Confidence 689999999999999999988898999999999999999988877666 57999999886621 1 112 9999996
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
.+ .....+++-+..++++||.+++
T Consensus 143 Av------a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 143 AV------ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred hc------cchHHHHHHHHHhcccCCcchh
Confidence 54 2456778888999999988754
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-07 Score=65.44 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=69.7
Q ss_pred CCcEEEEecCCCch-hHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGN-FIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~-~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.++||||||+|. .+..+++.+ ..|+++|+++.+++.++.+ .++++..|+++... .+ -..+|+|.+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~--~~-y~~a~liysi 84 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKL------GLNAFVDDLFNPNL--EI-YKNAKLIYSI 84 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh------CCeEEECcCCCCCH--HH-HhcCCEEEEe
Confidence 45789999999996 787888766 5999999999999999875 46888999987432 11 2368999874
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
. ||.+....+..+.+.+ |.-+++...+...
T Consensus 85 r-----pp~el~~~~~~la~~~--~~~~~i~~l~~e~ 114 (134)
T PRK04148 85 R-----PPRDLQPFILELAKKI--NVPLIIKPLSGEE 114 (134)
T ss_pred C-----CCHHHHHHHHHHHHHc--CCCEEEEcCCCCC
Confidence 2 4344455555555543 4457777766554
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.2e-08 Score=80.38 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=81.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|+|+|.-+..++... ....+++.|+++..+..++.++...+ .++.+...|..... ..+ ...||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~--~~~-~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG--AAL-PETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh--hhc-hhhcCe
Confidence 45688999999999999999998763 33589999999999999998877665 56777777776521 122 347999
Q ss_pred EEechh------hcCCC-------cc-------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFV------LSAIH-------PN-------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~------l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++-.. +..-| ++ .+..++..+.++|||||.|+.+.
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 996222 21111 11 13588899999999999998765
|
|
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.2e-08 Score=76.20 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=73.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.|||+|||+|.++...+..+. .+|++++. .++.+.|+...+.+. .++.++.+-+.+ -.+|+ +.|+|
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEd----ieLPE-k~Dvi 247 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIED----IELPE-KVDVI 247 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCcccc----ccCch-hccEE
Confidence 34678999999999999998888875 49999996 567788887755443 578888887766 34444 78999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
++.-.-.-+--+......-.++++|+|+|..+-
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 974322212112333444557899999997764
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-07 Score=71.58 Aligned_cols=62 Identities=26% Similarity=0.397 Sum_probs=52.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED 140 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 140 (218)
...++.+|||+|||+|.++..++..++ .++++|+++.+++.++.+... ..++.++++|+...
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKV 87 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcC
Confidence 345678999999999999999998874 699999999999999887543 35788999998763
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.5e-09 Score=76.10 Aligned_cols=107 Identities=15% Similarity=0.209 Sum_probs=67.3
Q ss_pred CCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc----ccCCC--CCcc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI----LNQVP--HNSV 151 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~--~~~~ 151 (218)
++.++||+||++|.|+..++... +..+++++|+.+.. ....+.++.+|+.+... ...+. ...+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----------PLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc----------cccceeeeecccchhhHHHhhhhhccccccCc
Confidence 56899999999999999998876 56799999997751 11355666666655321 11122 2589
Q ss_pred cEEEechhhcCCC---------cchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 152 DIATLIFVLSAIH---------PNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 152 D~i~~~~~l~~~~---------~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
|+|++-....... .......+..+...|+|||.+++--+.....
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 9999965222111 0123345556678899999999877665443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.4e-08 Score=70.68 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=75.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-C-CccEEEEEeCCHHHHHHHHhCCccc-----------CCCceEEeccCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-S-KICYIHACDISPRAVNFFKLNPLYD-----------ASKMNVFPCDVTEDD 141 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~-~~~~v~~~D~s~~~~~~~~~~~~~~-----------~~~i~~~~~d~~~~~ 141 (218)
.+..|+.++||+|+|+|.++..++.. + +.....|+|.-++.++.++++.... -.++.++.+|...
T Consensus 78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~-- 155 (237)
T KOG1661|consen 78 DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRK-- 155 (237)
T ss_pred HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccc--
Confidence 56789999999999999999888743 2 3334589999999999999885321 1467788888766
Q ss_pred cccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 142 ILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 142 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
......+||.|.+..... .+.+.+...|++||.+++.-
T Consensus 156 --g~~e~a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 156 --GYAEQAPYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred --cCCccCCcceEEEccCcc--------ccHHHHHHhhccCCeEEEee
Confidence 233345899999874322 34455667889999888854
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-07 Score=73.17 Aligned_cols=74 Identities=19% Similarity=0.314 Sum_probs=59.9
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++... ..++.++++|+.+. .++ .+|.|++
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~----~~~--~~d~Vv~ 97 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKV----DLP--EFNKVVS 97 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccC----Cch--hceEEEE
Confidence 4567899999999999999999875 4899999999999999987653 35799999998763 222 4788887
Q ss_pred chh
Q psy1107 157 IFV 159 (218)
Q Consensus 157 ~~~ 159 (218)
+-.
T Consensus 98 NlP 100 (258)
T PRK14896 98 NLP 100 (258)
T ss_pred cCC
Confidence 544
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.3e-08 Score=69.05 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=54.1
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCc-ccEEEe
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNS-VDIATL 156 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~-~D~i~~ 156 (218)
.|+|+.||.|..++++|..+. +|+++|+++..++.++.++..++ .++.++++|+.+... .+.... +|+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~--~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLK--RLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGG--GB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHh--hccccccccEEEE
Confidence 699999999999999999874 89999999999999999988776 589999999877321 222222 799998
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-07 Score=72.71 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=57.7
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||+|||+|.++..++..++ +++++|+++.+++.++++... .++.++++|+.+.. ++.-..+.|+
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~----~~~~~~~~vv 110 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVD----LSELQPLKVV 110 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCC----HHHcCcceEE
Confidence 345678999999999999999998874 899999999999999887542 57999999987732 2211146777
Q ss_pred ec
Q psy1107 156 LI 157 (218)
Q Consensus 156 ~~ 157 (218)
++
T Consensus 111 ~N 112 (272)
T PRK00274 111 AN 112 (272)
T ss_pred Ee
Confidence 64
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.7e-08 Score=76.35 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=80.9
Q ss_pred HHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCC
Q psy1107 70 FHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQV 146 (218)
Q Consensus 70 ~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~ 146 (218)
....+....++.+|||+.|=+|.++...+..+. .+++.+|.|..+++.+++++..++ .++.++..|+.+..- ..-
T Consensus 114 nR~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~-~~~ 191 (286)
T PF10672_consen 114 NRKWVRKYAKGKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLK-RLK 191 (286)
T ss_dssp HHHHHHHHCTTCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHH-HHH
T ss_pred hHHHHHHHcCCCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH-HHh
Confidence 334444456789999999999999998877663 489999999999999999976554 468899988865211 101
Q ss_pred CCCcccEEEechh-hcCCC---cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 147 PHNSVDIATLIFV-LSAIH---PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 147 ~~~~~D~i~~~~~-l~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..++||+|++--. +.--. ..+...++..+.++|+|||.|++..
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 2358999998321 11000 1356678889999999999988765
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=73.60 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=78.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----cCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----DASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
+++.+||-||.|.|..+..+++..+..+++++|+++.+++.|++.+.. ...+++++..|...- .......+||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~--l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF--LKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH--HHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH--HHhccCCccc
Confidence 468899999999999999998776556999999999999999987542 236889998887652 1222222899
Q ss_pred EEEechhhcCCCcc--hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPN--KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|+.-..-...+.. -...+++.+.+.|+|+|.+++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99984321111111 13578899999999999998865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.4e-08 Score=71.58 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=83.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....++.+|||.|.|-|..++..++++. .+|+.++-++..++.|.-|.-... ..+.++.+|..+ ....+++.+|
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e--~V~~~~D~sf 206 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE--VVKDFDDESF 206 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH--HHhcCCcccc
Confidence 3345689999999999999999999884 499999999999999988743221 357888888766 3456888899
Q ss_pred cEEEechh-hcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFV-LSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~-l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|+-.-. ++....--...+.++++++|||||.++-..
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 99984211 111110013478899999999999999865
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.3e-07 Score=68.43 Aligned_cols=95 Identities=12% Similarity=0.138 Sum_probs=59.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHH-HHhCCcccCCCceEEeccCCCccccc-CCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF-FKLNPLYDASKMNVFPCDVTEDDILN-QVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~-~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~~~D~i~ 155 (218)
.++.++||+|||+|.++..+++.+. .+++++|+++.++.. .+.+.. -+.+...|+....... ...-..+|+++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga-~~v~avD~~~~~l~~~l~~~~~----v~~~~~~ni~~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAEKLRQDER----VKVLERTNIRYVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHhcCCC----eeEeecCCcccCCHhHcCCCceeeeEEE
Confidence 4677999999999999999998753 489999999988775 333322 1122333433211100 11112567666
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
++ ...++..+.+.|+| |.+++.
T Consensus 149 iS----------~~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 149 IS----------LISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred ee----------hHhHHHHHHHHhCc-CeEEEE
Confidence 53 22367888899999 766654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-07 Score=77.49 Aligned_cols=100 Identities=20% Similarity=0.161 Sum_probs=69.0
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCccc-ccCC-----------C
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDI-LNQV-----------P 147 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~-~~~~-----------~ 147 (218)
.++||++||+|.++..++... .+++++|+++.+++.+++++...+ .++.++..|+.+..- .... .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 579999999999999888765 389999999999999999876554 478999999865210 0000 0
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..+||+|++.-.-. .....++..+. +|+++++++.
T Consensus 286 ~~~~D~v~lDPPR~----G~~~~~l~~l~---~~~~ivyvSC 320 (362)
T PRK05031 286 SYNFSTIFVDPPRA----GLDDETLKLVQ---AYERILYISC 320 (362)
T ss_pred CCCCCEEEECCCCC----CCcHHHHHHHH---ccCCEEEEEe
Confidence 22589998742211 11234444443 3788888876
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.5e-07 Score=66.96 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=82.9
Q ss_pred HHHHHHhhh-cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCccccc
Q psy1107 68 NEFHEFVNQ-DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILN 144 (218)
Q Consensus 68 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~ 144 (218)
+.+..++.+ .-.+.++||+-+|+|.++.+.+.++. .+++.+|.+..++..++++.+..+ .+..++..|... ...
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~--~L~ 107 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR--ALK 107 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH--HHH
Confidence 344555455 36789999999999999999999985 499999999999999999977666 678888888772 212
Q ss_pred CCCC-CcccEEEechhhcCCCcchH--HHHHHH--HHHhccCCeEEEEEe
Q psy1107 145 QVPH-NSVDIATLIFVLSAIHPNKF--STVVKN--LFIMLKSGGIILFRD 189 (218)
Q Consensus 145 ~~~~-~~~D~i~~~~~l~~~~~~~~--~~~l~~--~~~~Lk~gG~li~~~ 189 (218)
.... +.||+|++--.++ . ... ...+.. -..+|+|+|.+++-.
T Consensus 108 ~~~~~~~FDlVflDPPy~-~--~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 108 QLGTREPFDLVFLDPPYA-K--GLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred hcCCCCcccEEEeCCCCc-c--chhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 2222 2599999854333 1 122 222333 457899999877744
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.9e-07 Score=66.97 Aligned_cols=129 Identities=17% Similarity=0.219 Sum_probs=83.6
Q ss_pred hhHhhHHHHHHHhhhccC--CCcccchHHHHHHhhhcC---CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHH
Q psy1107 43 NKKKYWDLFYKRNETKFF--KDRNWTVNEFHEFVNQDV---GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVN 117 (218)
Q Consensus 43 ~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~ 117 (218)
+.-+.|+.........-. ....|+.+-+.+...... ...++|||||-+....... .+-..|+.||+++.
T Consensus 10 GGl~~YQ~AS~~Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~--- 83 (219)
T PF11968_consen 10 GGLEAYQRASKQGQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ--- 83 (219)
T ss_pred cCHHHHHHHHHhcCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCcccc---cCceeeEEeecCCC---
Confidence 444555654444322111 123555555555432222 3479999999866554332 23357999998662
Q ss_pred HHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCC-cchHHHHHHHHHHhccCCeE-----EEEEe
Q psy1107 118 FFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGI-----ILFRD 189 (218)
Q Consensus 118 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~-----li~~~ 189 (218)
.-.+.++|+.+..++ .-+.++||+|.++-|+.++| |...-.++.++.+.|+|+|. |+++-
T Consensus 84 -----------~~~I~qqDFm~rplp-~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 84 -----------HPGILQQDFMERPLP-KNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred -----------CCCceeeccccCCCC-CCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 345677888774321 12356899999999999998 67788999999999999999 77653
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=72.53 Aligned_cols=115 Identities=14% Similarity=0.175 Sum_probs=72.7
Q ss_pred CCcEEEEecCC--CchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCC--Cccc
Q psy1107 79 GEGVLLEVGCG--VGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPH--NSVD 152 (218)
Q Consensus 79 ~~~~vLDiGcG--~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~--~~~D 152 (218)
.-.+.|||||| +-....++++. .|.++|+.+|.++.++..++......+ ....++..|+.+..-...-+. +-+|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 56899999999 44567777655 788999999999999999888755443 248899999988642211000 1122
Q ss_pred -----EEEechhhcCCCc-chHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 153 -----IATLIFVLSAIHP-NKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 153 -----~i~~~~~l~~~~~-~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
.+++..+++++++ ++...++..+...|-||.+|+++.....
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 5666778999986 7899999999999999999999876544
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.9e-07 Score=67.31 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=82.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcc--cccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDD--ILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~--~~~~~~~~ 149 (218)
.....+.++||+|.=+|..+..+|...| ..+|+++|+++...+.+.+..+..+ .++.+++++..+.- +......+
T Consensus 69 i~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 69 IRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred HHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCC
Confidence 4456788999999999999988887754 4699999999999999977644333 67889888765531 11233567
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+||+++.- +.- ++......++.+++|+||.+++-
T Consensus 149 tfDfaFvD----adK-~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 149 TFDFAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ceeEEEEc----cch-HHHHHHHHHHHhhcccccEEEEe
Confidence 99999973 332 45557889999999999988873
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.3e-08 Score=81.16 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=70.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCc-cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..-.++||+|||+|.++..+.+++-. .++..-|..+..+..|.++- +.....-+. ...++++++.||+|.|
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG------vpa~~~~~~--s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG------VPAMIGVLG--SQRLPFPSNAFDMVHC 187 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC------cchhhhhhc--cccccCCccchhhhhc
Confidence 34468899999999999999887521 12222244455666666541 111111110 1147899999999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
...+....+.+ ..++-++-|+|+|||+++++....+
T Consensus 188 src~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 188 SRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccccchhcc-cceeehhhhhhccCceEEecCCccc
Confidence 88766554332 4577889999999999999775544
|
; GO: 0008168 methyltransferase activity |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.7e-07 Score=75.29 Aligned_cols=100 Identities=18% Similarity=0.118 Sum_probs=68.6
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCccccc-C---C---C-----
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILN-Q---V---P----- 147 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~-~---~---~----- 147 (218)
.+|||++||+|.++..++... .+++++|+++.+++.+++++...+ .++.++..|+.+..... . + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 479999999999999888765 389999999999999999876555 47899999886521100 0 1 0
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
...+|+|++.-.=. .....++..+ ++|+++++++.
T Consensus 277 ~~~~d~v~lDPPR~----G~~~~~l~~l---~~~~~ivYvsC 311 (353)
T TIGR02143 277 SYNCSTIFVDPPRA----GLDPDTCKLV---QAYERILYISC 311 (353)
T ss_pred cCCCCEEEECCCCC----CCcHHHHHHH---HcCCcEEEEEc
Confidence 11379988742211 1123444433 34788888876
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG1709|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-06 Score=65.26 Aligned_cols=107 Identities=13% Similarity=0.143 Sum_probs=83.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+||++|.|.|.....+.++.|. +-+.++..+.+++..+........++..+.+-..+ ....++++.||-|+.
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeD--vl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWED--VLNTLPDKHFDGIYY 175 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchHh--hhccccccCcceeEe
Confidence 478899999999999999888777665 77789999999999998865555677777765544 345678889999986
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
...-.+. ++...+.+.+.++|||+|.+-+-
T Consensus 176 DTy~e~y--Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 176 DTYSELY--EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred echhhHH--HHHHHHHHHHhhhcCCCceEEEe
Confidence 4322222 67888899999999999987663
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.5e-07 Score=71.80 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=88.1
Q ss_pred HhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCc
Q psy1107 73 FVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 73 ~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
++....++.+|||+-+|.|.+++.+|..+.. .|+++|++|.+++.+++++..+. ..+..+++|.... ....+.
T Consensus 182 va~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev----~~~~~~ 256 (341)
T COG2520 182 VAELVKEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREV----APELGV 256 (341)
T ss_pred HHhhhcCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHh----hhcccc
Confidence 3344567899999999999999999988753 59999999999999999977655 3477888988762 222257
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
+|-|+++.. .....++..+.+.+++||.+-+..+...+.
T Consensus 257 aDrIim~~p------~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 257 ADRIIMGLP------KSAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred CCEEEeCCC------CcchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 999997532 345678899999999999999988776655
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.1e-07 Score=75.13 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=77.2
Q ss_pred cEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.+|||+.||+|..++.++...+ ..+|+++|+++.+++.+++|.+.++ .++.+.+.|+.... ......||+|.+.-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l---~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVL---RYRNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHH---HHhCCCCCEEEeCC
Confidence 5899999999999999998732 2489999999999999999876554 35778888876521 11124799998732
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.....++..+.+.+++||+|++..
T Consensus 123 ------fGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 ------FGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ------CCCcHHHHHHHHHhcccCCEEEEEe
Confidence 2334568899999999999999974
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-07 Score=73.78 Aligned_cols=75 Identities=27% Similarity=0.296 Sum_probs=59.7
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc--CCCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD--ASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||||||+|.++..++..+ .+++++|+++.+++.++++.... ..++.++++|+...+ + ..+|.
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~----~--~~~d~ 104 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE----F--PYFDV 104 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc----c--cccCE
Confidence 34567899999999999999998875 48999999999999999875433 257999999997632 2 25788
Q ss_pred EEech
Q psy1107 154 ATLIF 158 (218)
Q Consensus 154 i~~~~ 158 (218)
|+++-
T Consensus 105 VvaNl 109 (294)
T PTZ00338 105 CVANV 109 (294)
T ss_pred EEecC
Confidence 88743
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.1e-07 Score=71.94 Aligned_cols=81 Identities=15% Similarity=0.038 Sum_probs=62.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..++..+||++||.|..+..+++..+ ..+|+|+|.++.+++.++++... ..++.+++.|+.+......-.-.++|.|+
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l~~~~~~vDgIl 95 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVLAEGLGKVDGIL 95 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHHHcCCCccCEEE
Confidence 35677999999999999999998864 67999999999999999987655 56899999988774211111112799998
Q ss_pred ech
Q psy1107 156 LIF 158 (218)
Q Consensus 156 ~~~ 158 (218)
+..
T Consensus 96 ~DL 98 (296)
T PRK00050 96 LDL 98 (296)
T ss_pred ECC
Confidence 843
|
|
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.2e-07 Score=68.91 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=62.4
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
....|+|.-||.|..+++++..++ .|+++|+++..+..|+.+++.++ .++.|+++|+.+....+.+....+|+++.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 567899999999999999999885 89999999999999999998776 68999999988753333343334666665
Q ss_pred c
Q psy1107 157 I 157 (218)
Q Consensus 157 ~ 157 (218)
+
T Consensus 172 s 172 (263)
T KOG2730|consen 172 S 172 (263)
T ss_pred C
Confidence 3
|
|
| >KOG4589|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.7e-07 Score=66.12 Aligned_cols=116 Identities=13% Similarity=0.177 Sum_probs=76.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEec-cCCCcc----cccCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPC-DVTEDD----ILNQVPH 148 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~----~~~~~~~ 148 (218)
....|+.+|||+||-+|.|+.-..+. +|+.-+.|+|+-.-. -+..+.++++ |+++.. +.+.+|+
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------PPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------CCCCcccccccccCCHHHHHHHHHhCCC
Confidence 44578999999999999999777766 588899999983321 1123444444 777653 3456777
Q ss_pred CcccEEEechhhc--CCCc-------chHHHHHHHHHHhccCCeEEEEEecCCCchhhhcc
Q psy1107 149 NSVDIATLIFVLS--AIHP-------NKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRF 200 (218)
Q Consensus 149 ~~~D~i~~~~~l~--~~~~-------~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~~~~ 200 (218)
...|+|++.+.-. .+.. +....++.-+...++|+|.+++--|...+...+..
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r 195 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQR 195 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHH
Confidence 8899998743211 1111 11224444556778999999998888777665443
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=69.25 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=76.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccCCCceE-EeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDASKMNV-FPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~-~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...+.+|||+|||+|.-+..+....+ ..+++++|.|+.+++.++............ ....+.. ...+-...|+|
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~DLv 106 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYR----DFLPFPPDDLV 106 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhc----ccccCCCCcEE
Confidence 34677999999999987765555433 348999999999999998875543211111 0111111 11111234999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
++.++|..++......+++.+.+.+.+ .|++++.+.....
T Consensus 107 i~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf 146 (274)
T PF09243_consen 107 IASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF 146 (274)
T ss_pred EEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH
Confidence 999999999876777888888777666 8888887655543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.7e-07 Score=74.11 Aligned_cols=124 Identities=23% Similarity=0.264 Sum_probs=87.6
Q ss_pred hhccCCCcccchHHHHHHh---hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCce
Q psy1107 56 ETKFFKDRNWTVNEFHEFV---NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMN 131 (218)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~ 131 (218)
...|++.+....+.+...+ ....++.++||+-||.|.++..++... .+|+|+|+++.+++.|+.+++.++ .|++
T Consensus 267 ~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~ 344 (432)
T COG2265 267 PRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVE 344 (432)
T ss_pred CCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEE
Confidence 3456666655555554444 344567899999999999999999655 599999999999999999988776 6799
Q ss_pred EEeccCCCcccccCC-CCCcccEEEechhhcCCCcchHH-HHHHHHHHhccCCeEEEEEe
Q psy1107 132 VFPCDVTEDDILNQV-PHNSVDIATLIFVLSAIHPNKFS-TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 132 ~~~~d~~~~~~~~~~-~~~~~D~i~~~~~l~~~~~~~~~-~~l~~~~~~Lk~gG~li~~~ 189 (218)
|...+..+.. ... ....+|.|+..- |..... .+++.+ ..++|..+++++.
T Consensus 345 f~~~~ae~~~--~~~~~~~~~d~VvvDP-----PR~G~~~~~lk~l-~~~~p~~IvYVSC 396 (432)
T COG2265 345 FIAGDAEEFT--PAWWEGYKPDVVVVDP-----PRAGADREVLKQL-AKLKPKRIVYVSC 396 (432)
T ss_pred EEeCCHHHHh--hhccccCCCCEEEECC-----CCCCCCHHHHHHH-HhcCCCcEEEEeC
Confidence 9988876632 122 234789998731 213333 444444 4458888888887
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-06 Score=70.50 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=83.3
Q ss_pred hhhcCCCcEEEEecCCCchhHHHHhhcCCc--cEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCC-C
Q psy1107 74 VNQDVGEGVLLEVGCGVGNFIFPLLSWSKI--CYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPH-N 149 (218)
Q Consensus 74 ~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~--~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~-~ 149 (218)
+....++.+|||+|++.|.-+.++++...+ ..|+++|.++..+.....+....+ .++...+.|..... ...+. .
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~--~~~~~~~ 228 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA--ELLPGGE 228 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccc--ccccccC
Confidence 366778899999999999999999987543 456999999999999999987766 56677777765421 12222 2
Q ss_pred cccEEEech------hhcCCC-------cc-------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIF------VLSAIH-------PN-------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~------~l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+||.|++-. +++--| +. .+..++..+.++|||||.|+.+.
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 599998822 221111 11 14588999999999999999865
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-06 Score=67.15 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=74.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCC---------------------------------c
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNP---------------------------------L 124 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~---------------------------------~ 124 (218)
....+||-.|||-|.++..++..+ ..+.|.|.|.-|+-..+-.. .
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 446799999999999999999986 58999999988754433210 0
Q ss_pred --------ccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 125 --------YDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 125 --------~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
..+.+++...+|+.+.-. .....++||.|+..+.+... .+....++.+.++|||||+++=
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~-~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYG-PDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecC-CcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEe
Confidence 001245555555554110 11113689999988877766 4788999999999999996664
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.1e-07 Score=66.67 Aligned_cols=113 Identities=17% Similarity=0.156 Sum_probs=78.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc----cCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~~~ 149 (218)
....++..|+|+|+-+|.|+..+++. ++...|+++|+.+-. ...++.++++|++..+.. ..+...
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------~~~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------PIPGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------cCCCceEEeeeccCccHHHHHHHHcCCC
Confidence 33467899999999999999888776 344469999996631 124699999999987532 234555
Q ss_pred cccEEEechhh--------cCCC-cchHHHHHHHHHHhccCCeEEEEEecCCCchhh
Q psy1107 150 SVDIATLIFVL--------SAIH-PNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQ 197 (218)
Q Consensus 150 ~~D~i~~~~~l--------~~~~-~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~ 197 (218)
.+|+|++-..- .|.- .......+..+..+|+|||.+++-.+.+.+...
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~ 167 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFED 167 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHH
Confidence 67999973321 1110 011335566678899999999998887777554
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.8e-07 Score=68.52 Aligned_cols=111 Identities=23% Similarity=0.347 Sum_probs=70.4
Q ss_pred CCCcEEEEecCCCchhHHHHh-hcCCccEEEEEeCCHHHHHHHHhCCccc----------------C-------------
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLL-SWSKICYIHACDISPRAVNFFKLNPLYD----------------A------------- 127 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~-~~~~~~~v~~~D~s~~~~~~~~~~~~~~----------------~------------- 127 (218)
.++.++||||||+-.....-+ ... -+|+..|+++..++..++..... +
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 457799999999865432222 222 37999999998887665532100 0
Q ss_pred CCc-eEEeccCCCcccccC-CC-CCcccEEEechhhcCCC--cchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 128 SKM-NVFPCDVTEDDILNQ-VP-HNSVDIATLIFVLSAIH--PNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 128 ~~i-~~~~~d~~~~~~~~~-~~-~~~~D~i~~~~~l~~~~--~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
..+ .++.||+.+.....+ .. ...+|+|++.+.++... .+.....++++.++|||||.|++...
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 112 377889988543222 11 12599999998888665 35678999999999999999999764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=70.65 Aligned_cols=113 Identities=24% Similarity=0.341 Sum_probs=70.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-------CCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCccccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-------SKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILN 144 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-------~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~ 144 (218)
....++.+|+|++||+|.++..+... .+...++|+|+++.++..++.++...+ .+..+...|......
T Consensus 42 ~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~-- 119 (311)
T PF02384_consen 42 LNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDK-- 119 (311)
T ss_dssp HTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHS--
T ss_pred hhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccc--
Confidence 34456678999999999998888763 255699999999999998876543222 234577777655321
Q ss_pred CCCCCcccEEEechhhcCC--C---------------c--chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 145 QVPHNSVDIATLIFVLSAI--H---------------P--NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~--~---------------~--~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
......||+|+++-.+... . + ..-..++..+.+.|++||.+.+.-
T Consensus 120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 1124589999995433322 0 0 112257788999999999876643
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3e-06 Score=65.95 Aligned_cols=95 Identities=11% Similarity=0.008 Sum_probs=70.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----cCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----DASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
+++.+||=+|.|.|..++++++. +. +++.+|+++.+++.+++.... ..+++.++.. + .....++||
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~------~~~~~~~fD 141 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L------LDLDIKKYD 141 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h------hhccCCcCC
Confidence 56789999999999999999976 44 999999999999999995432 2245555431 1 111235899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+|++-.. + ...+.+.+++.|+|||+++.-
T Consensus 142 VIIvDs~----~---~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 142 LIICLQE----P---DIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEEEcCC----C---ChHHHHHHHHhcCCCcEEEEC
Confidence 9997531 1 246778899999999988873
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.3e-06 Score=66.32 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=65.5
Q ss_pred chHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc-cc
Q psy1107 66 TVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI-LN 144 (218)
Q Consensus 66 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~ 144 (218)
+..++.+.+ ...++..++|.-+|.|..+..++...+..+++|+|.++.+++.+++.......++.+++.++.+... ..
T Consensus 8 ll~Evl~~L-~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 8 LLDEVVEGL-NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred hHHHHHHhc-CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 333444442 3456779999999999999999987655899999999999999998765555678888888776321 11
Q ss_pred CCCCCcccEEEe
Q psy1107 145 QVPHNSVDIATL 156 (218)
Q Consensus 145 ~~~~~~~D~i~~ 156 (218)
.....++|.|++
T Consensus 87 ~~~~~~vDgIl~ 98 (305)
T TIGR00006 87 ELLVTKIDGILV 98 (305)
T ss_pred hcCCCcccEEEE
Confidence 123346888877
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.8e-06 Score=63.15 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=81.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.-.+++|||+|+|+|..++..+..+. ..++..|+.+..+....-|++.++..+.+...|... .+..+|++++
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-------~~~~~Dl~La 148 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-------SPPAFDLLLA 148 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-------CCcceeEEEe
Confidence 34689999999999999999888875 489999999999888888888888888888887643 3457999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccC-CeEEEEEecCCCchh
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKS-GGIILFRDYGLHDMA 196 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~-gG~li~~~~~~~~~~ 196 (218)
..++..-+ ...+++. +...|.. |-.+++.+.++....
T Consensus 149 gDlfy~~~--~a~~l~~-~~~~l~~~g~~vlvgdp~R~~lp 186 (218)
T COG3897 149 GDLFYNHT--EADRLIP-WKDRLAEAGAAVLVGDPGRAYLP 186 (218)
T ss_pred eceecCch--HHHHHHH-HHHHHHhCCCEEEEeCCCCCCCc
Confidence 99876553 4556666 5555555 445555665544433
|
|
| >KOG3987|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.2e-07 Score=65.43 Aligned_cols=106 Identities=14% Similarity=0.212 Sum_probs=75.7
Q ss_pred chHHHHHHhhh-----cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEE-eccCCC
Q psy1107 66 TVNEFHEFVNQ-----DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVF-PCDVTE 139 (218)
Q Consensus 66 ~~~~~~~~~~~-----~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~-~~d~~~ 139 (218)
...++..++.. ...+.++||+|+|.|..+..++... -+|++.+.|..|....+.+. ..++ ..+..+
T Consensus 94 Se~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk~------ynVl~~~ew~~ 165 (288)
T KOG3987|consen 94 SEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKKN------YNVLTEIEWLQ 165 (288)
T ss_pred cHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhcC------Cceeeehhhhh
Confidence 34566666522 2346899999999999999988765 37999999999999988651 1111 111111
Q ss_pred cccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccC-CeEEEEE
Q psy1107 140 DDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKS-GGIILFR 188 (218)
Q Consensus 140 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~-gG~li~~ 188 (218)
.+-++|+|.|..++.-- .++-.+++.+..+|.| +|.+++.
T Consensus 166 -------t~~k~dli~clNlLDRc--~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 166 -------TDVKLDLILCLNLLDRC--FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred -------cCceeehHHHHHHHHhh--cChHHHHHHHHHHhccCCCcEEEE
Confidence 11279999998887633 2667899999999998 9988874
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-05 Score=60.28 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=75.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+||-+|..+|.....++.- ++...|++++.|+.....+...++. -.|+--+..|+..+.....+-+ ..|+
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-R~NIiPIl~DAr~P~~Y~~lv~-~VDv 146 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-RPNIIPILEDARHPEKYRMLVE-MVDV 146 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-STTEEEEES-TTSGGGGTTTS---EEE
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-CCceeeeeccCCChHHhhcccc-cccE
Confidence 44568899999999999988888765 5577999999999664444332221 1578888889888654334434 8999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++.- ..|+..+.+...+...||+||.+++.-
T Consensus 147 I~~DV----aQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 147 IFQDV----AQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEE-----SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEecC----CChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 99732 234677778888999999999998854
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=62.88 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=78.7
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
..+.|+|+|+|.++...+... -+|++++-+|.....|.++....+ .++.++.+|+.+- .+ ...|+|+|...
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A--~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y----~f--e~ADvvicEml 105 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA--ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY----DF--ENADVVICEML 105 (252)
T ss_pred hceeeccCCcchHHHHHHhhh--ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc----cc--cccceeHHHHh
Confidence 789999999999997777653 399999999999999999977655 6899999998773 33 25799999665
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
-..+-.+.+..+++.+.+.||-.+.++-
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 4444345667888888889998887764
|
|
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.9e-06 Score=66.08 Aligned_cols=74 Identities=28% Similarity=0.337 Sum_probs=63.4
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
+...+...|||+|.|+|.++..+.+.+ .+|+++++++.++.....+....+ ..+.++++|+...++ | .||
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~----P--~fd 125 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL----P--RFD 125 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC----c--ccc
Confidence 566788999999999999999999987 489999999999999999877666 679999999987432 2 588
Q ss_pred EEEe
Q psy1107 153 IATL 156 (218)
Q Consensus 153 ~i~~ 156 (218)
++++
T Consensus 126 ~cVs 129 (315)
T KOG0820|consen 126 GCVS 129 (315)
T ss_pred eeec
Confidence 8887
|
|
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.7e-06 Score=69.04 Aligned_cols=109 Identities=18% Similarity=0.198 Sum_probs=86.3
Q ss_pred CCCc-EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEG-VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~-~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.+.. ++|-+|||.-.++..+.+.+- ..++.+|+|+.+++..............+...|+.. ..+++.+||+|+.
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~-~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~----l~fedESFdiVId 120 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGF-EDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQ----LVFEDESFDIVID 120 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCC-CCceeccccHHHHHHHHhccccCCcceEEEEecchh----ccCCCcceeEEEe
Confidence 3444 999999999999988887764 489999999999999988754334567888888887 6788889999999
Q ss_pred chhhcCCCcc-h-------HHHHHHHHHHhccCCeEEEEEecC
Q psy1107 157 IFVLSAIHPN-K-------FSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 157 ~~~l~~~~~~-~-------~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
-..++++..+ + ....+..+.+++++||+++...++
T Consensus 121 kGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 121 KGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred cCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 8887776422 1 235677889999999998887763
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-05 Score=62.63 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=60.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
+...++..|||||+|.|.++..+++.+. +|+++++++..+...++... ...++.++++|+...++..-. .++.|
T Consensus 26 a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l~---~~~~v 99 (259)
T COG0030 26 ANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDFPSLA---QPYKV 99 (259)
T ss_pred cCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCcchhhc---CCCEE
Confidence 4445578999999999999999999874 89999999999999998865 346899999999885432111 35666
Q ss_pred Ee
Q psy1107 155 TL 156 (218)
Q Consensus 155 ~~ 156 (218)
++
T Consensus 100 Va 101 (259)
T COG0030 100 VA 101 (259)
T ss_pred EE
Confidence 65
|
|
| >KOG1269|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.1e-07 Score=71.93 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=87.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++..++|+|||.|.....++... .+.++|+|+++..+..+........ .+..+..+|+.+ .+++++.||
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~----~~fedn~fd 180 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGK----MPFEDNTFD 180 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhc----CCCCccccC
Confidence 445666789999999999998887653 4689999999988888776643222 334446666655 578888999
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+.+..+..|.+ +...++.+++++++|||++++.++.
T Consensus 181 ~v~~ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 181 GVRFLEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cEEEEeecccCC--cHHHHHHHHhcccCCCceEEeHHHH
Confidence 999999999996 7888999999999999999987644
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-06 Score=66.19 Aligned_cols=123 Identities=15% Similarity=0.204 Sum_probs=78.4
Q ss_pred chHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC
Q psy1107 66 TVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ 145 (218)
Q Consensus 66 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 145 (218)
+...+..+....+++.+|+|||||.-.++..+....++..|+++|++...++.........+.+..+...|+.. .
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~-----~ 166 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLS-----D 166 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTT-----S
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeec-----c
Confidence 34445555566677899999999999999999888778899999999999999998766666777788888765 3
Q ss_pred CCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 146 VPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 146 ~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
.+....|+.++.-+++.+........++. ...+ +...++++|+.....
T Consensus 167 ~~~~~~DlaLllK~lp~le~q~~g~g~~l-l~~~--~~~~~vVSfPtrSL~ 214 (251)
T PF07091_consen 167 PPKEPADLALLLKTLPCLERQRRGAGLEL-LDAL--RSPHVVVSFPTRSLG 214 (251)
T ss_dssp HTTSEESEEEEET-HHHHHHHSTTHHHHH-HHHS--CESEEEEEEES----
T ss_pred CCCCCcchhhHHHHHHHHHHHhcchHHHH-HHHh--CCCeEEEeccccccc
Confidence 34557999999888877632122122222 2222 333566666655554
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.9e-06 Score=72.24 Aligned_cols=81 Identities=21% Similarity=0.115 Sum_probs=54.0
Q ss_pred CCcEEEEecCCCchhHHHHhhcCC--------ccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCccccc-CCCC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSK--------ICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILN-QVPH 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~--------~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~-~~~~ 148 (218)
...+|||+|||+|.++..++...+ ...++++|+++.++..++.+....+ ..+.+.+.|........ .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456999999999999988876542 2578999999999999987754332 23444444443321111 1112
Q ss_pred CcccEEEechh
Q psy1107 149 NSVDIATLIFV 159 (218)
Q Consensus 149 ~~~D~i~~~~~ 159 (218)
+.||+|+++-.
T Consensus 111 ~~fD~IIgNPP 121 (524)
T TIGR02987 111 DLFDIVITNPP 121 (524)
T ss_pred CcccEEEeCCC
Confidence 47999999543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-05 Score=55.96 Aligned_cols=106 Identities=20% Similarity=0.367 Sum_probs=70.2
Q ss_pred EEEecCCCchhHHHHhhcCCc-cEEEEEeCCHHHHHHHHhCCcccCCC-ceEEeccCCCcccccCCCC-CcccEEEechh
Q psy1107 83 LLEVGCGVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDASK-MNVFPCDVTEDDILNQVPH-NSVDIATLIFV 159 (218)
Q Consensus 83 vLDiGcG~G~~~~~~~~~~~~-~~v~~~D~s~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~-~~~D~i~~~~~ 159 (218)
++|+|||+|... .+....+. ..++++|+++.++..+.......... +.+...|.... ..++.. ..+|++.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG--VLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccC--CCCCCCCCceeEEeeeee
Confidence 999999999976 33333222 37888999999998855543321111 56777766542 123444 47999943333
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.++.. ....+..+.+.++|+|.+++.......
T Consensus 129 ~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 129 LHLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hhcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 44442 678999999999999999997755443
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.4e-06 Score=63.39 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=63.4
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc----------ccCCCceEEeccCCCccccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL----------YDASKMNVFPCDVTEDDILN 144 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~----------~~~~~i~~~~~d~~~~~~~~ 144 (218)
....+....+|+|||.|......+...+-.+.+|+++.+...+.|..... ....++.+.++|+.+.+...
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK 117 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence 34567889999999999998888766543469999999988877765311 12356788888887754321
Q ss_pred CCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 145 QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
.+ -...|+|+++... +++ +....+......||+|-+++.
T Consensus 118 ~~-~s~AdvVf~Nn~~--F~~-~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 118 DI-WSDADVVFVNNTC--FDP-DLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HH-GHC-SEEEE--TT--T-H-HHHHHHHHHHTTS-TT-EEEE
T ss_pred hh-hcCCCEEEEeccc--cCH-HHHHHHHHHHhcCCCCCEEEE
Confidence 11 0246999997653 343 444555677778899987765
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.9e-06 Score=62.50 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=78.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCccc--CCCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYD--ASKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....|+.+|||-|.|+|.++..+++. +|..+++.+|+.....+.|.+-++.. ++++.+.+.|+....+ ...+..+
T Consensus 101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF--~~ks~~a 178 (314)
T KOG2915|consen 101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF--LIKSLKA 178 (314)
T ss_pred hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc--ccccccc
Confidence 55689999999999999999999877 68889999999988888888776654 4799999999988432 2224678
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCe-EEEE
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGG-IILF 187 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG-~li~ 187 (218)
|.|++. +| .+...+..+..+||.+| +|+.
T Consensus 179 DaVFLD-----lP--aPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 179 DAVFLD-----LP--APWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred ceEEEc-----CC--ChhhhhhhhHHHhhhcCceEEe
Confidence 999863 33 33445666777887766 4443
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.2e-06 Score=63.52 Aligned_cols=106 Identities=15% Similarity=0.179 Sum_probs=65.5
Q ss_pred CCcEEEEecCCCchhHHHHhh-c-CCccEEEEEeCCHHHHHHHHhCCc---ccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLS-W-SKICYIHACDISPRAVNFFKLNPL---YDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~-~-~~~~~v~~~D~s~~~~~~~~~~~~---~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
.+.+|+=||||+=.++..+.. . ++...+.++|+++.+++.+++... ....++.|+..|+.+.. ..-..||+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~----~dl~~~Dv 195 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT----YDLKEYDV 195 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-----GG----SE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc----cccccCCE
Confidence 356999999998777655543 2 456789999999999999987654 23467899999986632 12237999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+....+. +..+....++..+.+.++||..+++..
T Consensus 196 V~lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 196 VFLAALVG-MDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEhhhcc-cccchHHHHHHHHHhhCCCCcEEEEec
Confidence 98865432 333578899999999999999999975
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.3e-05 Score=71.17 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=75.2
Q ss_pred CCCcEEEEecCCCchhHHHHhhcC------------------------------------------CccEEEEEeCCHHH
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWS------------------------------------------KICYIHACDISPRA 115 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~------------------------------------------~~~~v~~~D~s~~~ 115 (218)
.++..++|++||+|.+.++.+... ...+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 456899999999999998887521 11369999999999
Q ss_pred HHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEechhhcC-CC-cchHHHHHHHHHHhc---cCCeEEEEE
Q psy1107 116 VNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSA-IH-PNKFSTVVKNLFIML---KSGGIILFR 188 (218)
Q Consensus 116 ~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~-~~-~~~~~~~l~~~~~~L---k~gG~li~~ 188 (218)
++.|+.++...+ ..+.+.++|+.+.. .+...+++|+|+++-.... +. ..+...+...+.+.+ .+|+.+++.
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~--~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ll 346 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLK--NPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALF 346 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcc--cccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 999999977655 35889999987732 1222347999998754321 11 123334444444444 388888776
Q ss_pred ec
Q psy1107 189 DY 190 (218)
Q Consensus 189 ~~ 190 (218)
..
T Consensus 347 t~ 348 (702)
T PRK11783 347 SS 348 (702)
T ss_pred eC
Confidence 63
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.9e-06 Score=64.42 Aligned_cols=113 Identities=19% Similarity=0.148 Sum_probs=81.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++..|||+|++.|.-+..++.... ...+++.|++...+...+.+....+ .++.....|..... .......||
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~--~~~~~~~fd 158 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLD--PKKPESKFD 158 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHH--HHHHTTTEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccc--ccccccccc
Confidence 5567788999999999999998887743 5699999999999999998876665 56677666665421 112223599
Q ss_pred EEEech------hhcCCCc-------c-------hHHHHHHHHHHhc----cCCeEEEEEe
Q psy1107 153 IATLIF------VLSAIHP-------N-------KFSTVVKNLFIML----KSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~------~l~~~~~-------~-------~~~~~l~~~~~~L----k~gG~li~~~ 189 (218)
.|++-. ++..-|. + .+..+++.+.+.+ ||||.++.+.
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 998822 2222221 1 1458889999999 9999999865
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.5e-05 Score=66.39 Aligned_cols=81 Identities=20% Similarity=0.253 Sum_probs=62.3
Q ss_pred hccCCCcccchHHHHHHh---hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceE
Q psy1107 57 TKFFKDRNWTVNEFHEFV---NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNV 132 (218)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~ 132 (218)
..||+.+.-..+.+...+ +..+.+..++|++||+|.++..+++.. .+|+|+++++.+++.|..++..++ .|..|
T Consensus 358 ~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~F 435 (534)
T KOG2187|consen 358 GAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATF 435 (534)
T ss_pred chhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceee
Confidence 344455444444444444 556677899999999999999888754 499999999999999999988776 78999
Q ss_pred EeccCCC
Q psy1107 133 FPCDVTE 139 (218)
Q Consensus 133 ~~~d~~~ 139 (218)
+++-..+
T Consensus 436 i~gqaE~ 442 (534)
T KOG2187|consen 436 IVGQAED 442 (534)
T ss_pred eecchhh
Confidence 9995444
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.7e-06 Score=66.82 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=53.7
Q ss_pred hccCCCcccchHHHHHHh---hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceE
Q psy1107 57 TKFFKDRNWTVNEFHEFV---NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNV 132 (218)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~ 132 (218)
..|++.+......+...+ ....+. .+||+.||.|.++..++... .+|+|+|+++.+++.|+.++..++ .|+.|
T Consensus 172 ~sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f 248 (352)
T PF05958_consen 172 GSFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEF 248 (352)
T ss_dssp TS---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEE
T ss_pred CcCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceE
Confidence 455565555555444443 222333 89999999999999999876 499999999999999999987766 68999
Q ss_pred EeccCC
Q psy1107 133 FPCDVT 138 (218)
Q Consensus 133 ~~~d~~ 138 (218)
...+..
T Consensus 249 ~~~~~~ 254 (352)
T PF05958_consen 249 IRGDAE 254 (352)
T ss_dssp EE--SH
T ss_pred EEeecc
Confidence 887654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.5e-05 Score=55.84 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=59.5
Q ss_pred EEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcch---------HHHHHH
Q psy1107 105 YIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNK---------FSTVVK 173 (218)
Q Consensus 105 ~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~---------~~~~l~ 173 (218)
+|+++|+.+.+++.++++....+ .++.+++.+-.+. ...++.+++|+++.+ +.++|..| ....++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l--~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENL--DEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGG--GGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHH--HhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHH
Confidence 58999999999999999866543 4688877765442 233444578988854 45666433 457888
Q ss_pred HHHHhccCCeEEEEEecCCCchhh
Q psy1107 174 NLFIMLKSGGIILFRDYGLHDMAQ 197 (218)
Q Consensus 174 ~~~~~Lk~gG~li~~~~~~~~~~~ 197 (218)
.+.++|+|||++.+..|.+.+.+.
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH~gG~ 100 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGHPGGK 100 (140)
T ss_dssp HHHHHEEEEEEEEEEE--STCHHH
T ss_pred HHHHhhccCCEEEEEEeCCCCCCH
Confidence 999999999999999998877653
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.6e-06 Score=57.73 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=48.2
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCC
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTE 139 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~ 139 (218)
++||+|||.|..+..++..++..+++++|+++.+.+.++++...++ .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 4899999999999999988887799999999999999998865443 457777766554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.98 E-value=2e-05 Score=59.26 Aligned_cols=96 Identities=19% Similarity=0.117 Sum_probs=62.5
Q ss_pred EEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCc-ccEEEechh
Q psy1107 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNS-VDIATLIFV 159 (218)
Q Consensus 83 vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~-~D~i~~~~~ 159 (218)
|.||||..|.+...+++.+...+++++|+++..++.|+++....+ .++.+..+|... .++.+. .|.|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-----~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-----VLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-----G--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-----ccCCCCCCCEEEEecC
Confidence 689999999999999999876689999999999999999866544 568888888654 333333 677766432
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
-. .....++......+++...|++
T Consensus 76 GG----~lI~~ILe~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 76 GG----ELIIEILEAGPEKLSSAKRLIL 99 (205)
T ss_dssp -H----HHHHHHHHHTGGGGTT--EEEE
T ss_pred CH----HHHHHHHHhhHHHhccCCeEEE
Confidence 11 2344555555555544444444
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00013 Score=53.92 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=79.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+||-+|+.+|.....++.-.+...+++++.|+....-....+... .|+.-+..|+..+.-...+-+ ..|+|
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-~Ni~PIL~DA~~P~~Y~~~Ve-~VDvi 149 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-PNIIPILEDARKPEKYRHLVE-KVDVI 149 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-CCceeeecccCCcHHhhhhcc-cccEE
Confidence 4467889999999999999888887666678999999998766655543322 577777788877532222323 68999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+.. -..|+...-+...+...||+||.+++.
T Consensus 150 y~D----VAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 150 YQD----VAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EEe----cCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 862 224567777889999999999977774
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=59.66 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=78.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCc--------------------------------c-------EEEEEeCCHHH
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKI--------------------------------C-------YIHACDISPRA 115 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~--------------------------------~-------~v~~~D~s~~~ 115 (218)
....++..++|.=||+|.+.++.|...++ + .++|+|+++.+
T Consensus 187 agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 187 AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 44456679999999999999999876532 1 27799999999
Q ss_pred HHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEechhhc-CCC-cc----hHHHHHHHHHHhccCCeEEEE
Q psy1107 116 VNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLS-AIH-PN----KFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 116 ~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~-~~~-~~----~~~~~l~~~~~~Lk~gG~li~ 187 (218)
++.|+.|+...+ ..|.|.+.|+.... .++ ..+|+|+|+-... -+. .. ....+.+.+.+.++.-+.+++
T Consensus 267 i~~Ak~NA~~AGv~d~I~f~~~d~~~l~--~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~ 342 (381)
T COG0116 267 IEGAKANARAAGVGDLIEFKQADATDLK--EPL--EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVF 342 (381)
T ss_pred HHHHHHHHHhcCCCceEEEEEcchhhCC--CCC--CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 999999977655 57999999998732 222 5799999854321 111 11 233455566677777777777
Q ss_pred Ee
Q psy1107 188 RD 189 (218)
Q Consensus 188 ~~ 189 (218)
..
T Consensus 343 tt 344 (381)
T COG0116 343 TT 344 (381)
T ss_pred Ec
Confidence 65
|
|
| >KOG3115|consensus | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.9e-05 Score=56.53 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=68.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-------C-CCceEEeccCCCcccccCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-------A-SKMNVFPCDVTEDDILNQV 146 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-------~-~~i~~~~~d~~~~~~~~~~ 146 (218)
....+...+.|||||.|.++..++..+|+.-+.|++|.-.+-++.+.++... . .|+.+...+..... +.-+
T Consensus 56 ~~~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l-pn~f 134 (249)
T KOG3115|consen 56 RALNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL-PNFF 134 (249)
T ss_pred hhccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc-cchh
Confidence 3344567889999999999999999999999999998877776666653211 1 34555555432210 0112
Q ss_pred CCCcccEEEechhhcCCCc------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 147 PHNSVDIATLIFVLSAIHP------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~~------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..+...-++..+.--|+.. -....++.+..-+|++||.++...
T Consensus 135 ~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 135 EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred hhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 2222222222111111110 002256778888999999998764
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.2e-06 Score=56.24 Aligned_cols=100 Identities=22% Similarity=0.223 Sum_probs=42.6
Q ss_pred EEecCCCchhHHHHhhcCCc---cEEEEEeCCHH---HHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 84 LEVGCGVGNFIFPLLSWSKI---CYIHACDISPR---AVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 84 LDiGcG~G~~~~~~~~~~~~---~~v~~~D~s~~---~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
||+|+..|..+..+++..+. .+++++|..+. ..+..++ .....++.++.++..+. ...++..++|+|+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~--l~~~~~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDF--LPSLPDGPIDLIFID 76 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHH--HHHHHH--EEEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHH--HHHcCCCCEEEEEEC
Confidence 68999999998888765432 26999999984 3333322 12235788999887542 123334589999874
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.. |. .+.....+..+.+.|+|||++++-|+
T Consensus 77 g~--H~-~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 77 GD--HS-YEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp S------HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred CC--CC-HHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 31 11 23566778889999999999888653
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=58.95 Aligned_cols=88 Identities=19% Similarity=0.262 Sum_probs=61.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.++||+||++|.++..+++.+ .+|+++|..+-.-. .. ..+++.....|.... .+ +.+.+|.++|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~-L~-----~~~~V~h~~~d~fr~---~p-~~~~vDwvVc 276 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQS-LM-----DTGQVEHLRADGFKF---RP-PRKNVDWLVC 276 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHh-hh-----CCCCEEEEeccCccc---CC-CCCCCCEEEE
Confidence 3578899999999999999999887 59999996542211 11 225677776665441 11 1457999998
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSG 182 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~g 182 (218)
-.+ +.+.++...+.++|..|
T Consensus 277 Dmv------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 277 DMV------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ecc------cCHHHHHHHHHHHHhcC
Confidence 544 24567777788888665
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=4e-05 Score=54.31 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=60.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhCCcccC----CCceEEeccCCCcccccCCCCC
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLNPLYDA----SKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
.+...|+|+|||.|.++..++.. .++.+|+++|.++..++.+..+..... .++.+...++... ....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 98 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE-----SSSD 98 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh-----cccC
Confidence 56789999999999999999871 266899999999999888887754332 3445544443321 1133
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHH
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFI 177 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~ 177 (218)
..++++..+.-..+ -..+++.+.+
T Consensus 99 ~~~~~vgLHaCG~L----s~~~l~~~~~ 122 (141)
T PF13679_consen 99 PPDILVGLHACGDL----SDRALRLFIR 122 (141)
T ss_pred CCeEEEEeecccch----HHHHHHHHHH
Confidence 56777765544433 2344444444
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00038 Score=54.62 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=65.7
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++..|||+|+|.|.++..+++.+ .+++++|+++...+..++... ...++.++..|+..-+....+. .....|+
T Consensus 27 ~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~~~~~-~~~~~vv 102 (262)
T PF00398_consen 27 DLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWDLYDLLK-NQPLLVV 102 (262)
T ss_dssp TCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSCGGGHCS-SSEEEEE
T ss_pred CCCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh-hcccceeeecchhccccHHhhc-CCceEEE
Confidence 34478999999999999999999887 599999999999999998765 4478999999998744322121 2334555
Q ss_pred echhhcCCCcchHHHHHHHHHH
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFI 177 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~ 177 (218)
++ +|...-..++.++..
T Consensus 103 ~N-----lPy~is~~il~~ll~ 119 (262)
T PF00398_consen 103 GN-----LPYNISSPILRKLLE 119 (262)
T ss_dssp EE-----ETGTGHHHHHHHHHH
T ss_pred EE-----ecccchHHHHHHHhh
Confidence 43 232334455555555
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.8e-05 Score=55.39 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=59.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCC----C
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVP----H 148 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~----~ 148 (218)
.-++..|+|+|.-.|..+..+|.. ++.++|+++|++...........-....++.++++|..+.+...... .
T Consensus 30 ~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 30 ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 346789999999999888777643 36789999999654332221111001268999999988765433321 1
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
....+|+.- . +|.. +.....++....++++|+++++-|
T Consensus 110 ~~~vlVilD-s-~H~~-~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 110 PHPVLVILD-S-SHTH-EHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp -SSEEEEES-S------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CCceEEEEC-C-CccH-HHHHHHHHHhCccCCCCCEEEEEe
Confidence 233455543 2 2222 466778888999999999999966
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG3201|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=1.9e-05 Score=56.11 Aligned_cols=113 Identities=14% Similarity=0.060 Sum_probs=72.6
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc----CCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD----ASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
..+..|||+|.| +|..+..+|...|...|...|-++.++...+.....+ ...+.....+.... .+......||
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a--qsq~eq~tFD 105 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA--QSQQEQHTFD 105 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh--HHHHhhCccc
Confidence 356899999999 5555666666677789999999999988877542111 11222222222111 0122234899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+|+|...+-.- +-...+++.+..+|+|.|.-++....+.+
T Consensus 106 iIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 106 IILAADCLFFD--EHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred EEEeccchhHH--HHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 99998754322 45567888899999999987776644444
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00079 Score=52.92 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=62.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc-cCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL-NQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~~D 152 (218)
....++...+|.--|.|..+..+++.++ ..+++++|-++.+++.|++.....+.++.+++.++.+.... .....+++|
T Consensus 19 L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vD 98 (314)
T COG0275 19 LAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVD 98 (314)
T ss_pred cccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCcee
Confidence 3455678999999999999999998876 34699999999999999998776667888888877654221 122234667
Q ss_pred EEEe
Q psy1107 153 IATL 156 (218)
Q Consensus 153 ~i~~ 156 (218)
.|++
T Consensus 99 GiL~ 102 (314)
T COG0275 99 GILL 102 (314)
T ss_pred EEEE
Confidence 6665
|
|
| >KOG1122|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00037 Score=56.98 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=80.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
..+.++-+|||+|+-+|.-+..+|.. .....|++.|.+...+.....++...+ .+......|...... ..++. +||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~-~~~~~-~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPE-KEFPG-SFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccc-cccCc-ccc
Confidence 55678899999999999988888765 223589999999999999988876655 455555566654210 12444 899
Q ss_pred EEEechhhcC--CC--c----------------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSA--IH--P----------------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~--~~--~----------------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
-|++-...+. +- + ..+++++..+..++++||+|+.+.
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 9987443332 10 0 125688888999999999999865
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00044 Score=52.49 Aligned_cols=104 Identities=20% Similarity=0.283 Sum_probs=71.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
.-..++..+||+|+.+|.++-.+.+.+. .+|+++|.....+..-.++ .+.-+.+...|+....- ..+.. ..|++
T Consensus 75 ~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~---d~rV~~~E~tN~r~l~~-~~~~~-~~d~~ 148 (245)
T COG1189 75 ELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRN---DPRVIVLERTNVRYLTP-EDFTE-KPDLI 148 (245)
T ss_pred CcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhc---CCcEEEEecCChhhCCH-HHccc-CCCeE
Confidence 3456788999999999999999988875 4999999877665544433 12234444555554211 12222 67888
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|.-.+ + -...++..+..+++++|.++..-
T Consensus 149 v~DvSF--I---SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 149 VIDVSF--I---SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred EEEeeh--h---hHHHHHHHHHHhcCCCceEEEEe
Confidence 875433 2 35678889999999999888754
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00078 Score=54.24 Aligned_cols=104 Identities=17% Similarity=0.276 Sum_probs=74.2
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCC--c------ccCCCceEEeccCCCcccccCCCC
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNP--L------YDASKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~--~------~~~~~i~~~~~d~~~~~~~~~~~~ 148 (218)
....++|-+|.|.|--++++.+. | ..+++-+|.+|++++.++.+. . ..+.+++++.-|..+ +..-..
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~---wlr~a~ 363 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ---WLRTAA 363 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH---HHHhhc
Confidence 55679999999999999999865 5 459999999999999998541 1 123567777777654 222333
Q ss_pred CcccEEEechhhcCCCcch-------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSAIHPNK-------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~-------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..||.|+.... .|+. -..+...+.+.|+++|++++-.
T Consensus 364 ~~fD~vIVDl~----DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 364 DMFDVVIVDLP----DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccccEEEEeCC----CCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 48999987321 1221 1356677889999999888854
|
|
| >KOG1099|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=7.8e-05 Score=56.03 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=72.1
Q ss_pred CcEEEEecCCCchhHHHHhhcC----Cc-----cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc----cccCC
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS----KI-----CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD----ILNQV 146 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~----~~-----~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~ 146 (218)
-.+++|+|+-+|.|+..+.+.. +. ..++++|+.+-+ --..+.-+++|++... +...|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----------PI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----------PIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----------ccCceEEeecccCCHhHHHHHHHHh
Confidence 4689999999999998877651 11 138999984421 0135677788888753 22346
Q ss_pred CCCcccEEEechh--hcCCCc-------chHHHHHHHHHHhccCCeEEEEEecCCCchhhh
Q psy1107 147 PHNSVDIATLIFV--LSAIHP-------NKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQM 198 (218)
Q Consensus 147 ~~~~~D~i~~~~~--l~~~~~-------~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~~ 198 (218)
...+.|+|+|.+. +..++. +.+...+.....+|||||.|+.--|..++...+
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslL 172 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLL 172 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHH
Confidence 6678999999553 222221 123355566678999999999877777775543
|
|
| >KOG2198|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00049 Score=55.44 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=76.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCc----cEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCccccc-----
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKI----CYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILN----- 144 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~----~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~----- 144 (218)
....|+.+|||+|+-+|.-+.++.+.... ..+++=|.++..+..........+ .++.+...|+.......
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCc
Confidence 55689999999999999999888876432 278888999988888876654333 34555555544322111
Q ss_pred CCCCCcccEEEechhhc------CCC---------------cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 145 QVPHNSVDIATLIFVLS------AIH---------------PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~------~~~---------------~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
......||-|+|--... ..+ +..+..++....++||+||.|+.+.
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 11223689888721111 000 1224578888999999999999876
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0002 Score=57.18 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=68.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCccc-CCCceEEeccCCCcccccCCCC-Cccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYD-ASKMNVFPCDVTEDDILNQVPH-NSVD 152 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~-~~~D 152 (218)
....+.+|||+|.|+|.-+...-...|+. +++.++.|+..-+..-...... ......-..|++.. ..+++. ..|+
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~d--Rl~lp~ad~yt 187 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTED--RLSLPAADLYT 187 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchh--ccCCCccceee
Confidence 34567789999999988775555555544 5666777776544443322111 11111222233322 123332 3677
Q ss_pred EEEechhhcCCC-cchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 153 IATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 153 ~i~~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+|++..-+-+.. +..+...++.+..++.|||.|++.+-|...
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 777665444332 223445889999999999999999866433
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.001 Score=49.94 Aligned_cols=95 Identities=11% Similarity=0.048 Sum_probs=65.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCC-CcccE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPH-NSVDI 153 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~-~~~D~ 153 (218)
...+..+.||||..+.+...+...++...+++.|+++..++.|.++....+ ..+....+|... ++.. ..+|+
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-----~l~~~d~~d~ 88 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-----VLELEDEIDV 88 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-----ccCccCCcCE
Confidence 345556999999999999999999988899999999999999998876544 445555555533 3333 36888
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhcc
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLK 180 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk 180 (218)
|+..++-. .....++++....|+
T Consensus 89 ivIAGMGG----~lI~~ILee~~~~l~ 111 (226)
T COG2384 89 IVIAGMGG----TLIREILEEGKEKLK 111 (226)
T ss_pred EEEeCCcH----HHHHHHHHHhhhhhc
Confidence 87643211 234455555555444
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=3.9e-05 Score=54.06 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=41.8
Q ss_pred cCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 144 NQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 144 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..|.+++.|+|++..+++|+..+.-..+++.+.+.|||||+|.++-
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 5677789999999999999998888899999999999999999865
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00061 Score=50.86 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=64.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCc--cEEEEEeCCHHHHHHHHhCC--------------------------------
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKI--CYIHACDISPRAVNFFKLNP-------------------------------- 123 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~--~~v~~~D~s~~~~~~~~~~~-------------------------------- 123 (218)
..+.++.|.|||+|.++..+.-.... ..+++.|+++.+++.|++|.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 45679999999999998777654322 38999999999999999874
Q ss_pred ---------ccc--CCCceEEeccCCCcccccCCCC-CcccEEEechhhcCCC-------cchHHHHHHHHHHhccCCeE
Q psy1107 124 ---------LYD--ASKMNVFPCDVTEDDILNQVPH-NSVDIATLIFVLSAIH-------PNKFSTVVKNLFIMLKSGGI 184 (218)
Q Consensus 124 ---------~~~--~~~i~~~~~d~~~~~~~~~~~~-~~~D~i~~~~~l~~~~-------~~~~~~~l~~~~~~Lk~gG~ 184 (218)
... .......+.|+++.......+. ...|+|+..-...++. .+-...++..+..+|-+++.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 011 1235566777777433211222 1359988733322221 12356899999999966666
Q ss_pred EEEEe
Q psy1107 185 ILFRD 189 (218)
Q Consensus 185 li~~~ 189 (218)
+.+.+
T Consensus 210 V~v~~ 214 (246)
T PF11599_consen 210 VAVSD 214 (246)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66654
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0012 Score=50.09 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=72.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHH----HHHHHhCCcccCCCceEEeccCCCcccccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRA----VNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~----~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
.+..|+.+||-+|+++|.....+..- +|...|++++.|... +.+|+++ .|+.-+.-|++.+.... ..-+
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-----tNiiPIiEDArhP~KYR-mlVg 225 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-----TNIIPIIEDARHPAKYR-MLVG 225 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-----CCceeeeccCCCchhee-eeee
Confidence 56789999999999999887777654 688899999998854 4444443 45666666666632111 1112
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
-.|+|++. -.+|+..+.+...+...||+||-++++-
T Consensus 226 mVDvIFaD----vaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 226 MVDVIFAD----VAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eEEEEecc----CCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 46777752 2234566666788899999999999854
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0018 Score=53.27 Aligned_cols=112 Identities=14% Similarity=0.195 Sum_probs=67.3
Q ss_pred CCcEEEEecCCCchhHHHHhhc---------------CCccEEEEEeCCHHHHHHHHhCCcc--------------cCCC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSW---------------SKICYIHACDISPRAVNFFKLNPLY--------------DASK 129 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~---------------~~~~~v~~~D~s~~~~~~~~~~~~~--------------~~~~ 129 (218)
+..+|+|+|||+|..+..+... .|..+++.-|.-..-....-..... .+.+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4679999999999887665432 1345666666443222222221110 0111
Q ss_pred ceEE---eccCCCcccccCCCCCcccEEEechhhcCCC--cc----------------------------------hHHH
Q psy1107 130 MNVF---PCDVTEDDILNQVPHNSVDIATLIFVLSAIH--PN----------------------------------KFST 170 (218)
Q Consensus 130 i~~~---~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~--~~----------------------------------~~~~ 170 (218)
..|. .+.+.. .-+|.++.+++++...+|+++ |+ |+..
T Consensus 143 ~~f~~gvpGSFY~----RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~ 218 (386)
T PLN02668 143 SYFAAGVPGSFYR----RLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAG 218 (386)
T ss_pred ceEEEecCccccc----cccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHH
Confidence 1122 233443 457888999999999999886 22 1234
Q ss_pred HHHHHHHhccCCeEEEEEecCCCc
Q psy1107 171 VVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 171 ~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+|+.-.+-|.|||.+++.-.++.+
T Consensus 219 FL~~Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 219 FLRARAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHHHHHhccCcEEEEEEecCCC
Confidence 455556788999999998877654
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0013 Score=52.49 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=61.5
Q ss_pred hHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc-cC
Q psy1107 67 VNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL-NQ 145 (218)
Q Consensus 67 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~ 145 (218)
..+..+.+ ...++..++|.-.|.|..+..+++..+.++++|+|-++.+++.++++......++.+++.++.+.... ..
T Consensus 9 l~Evl~~L-~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 9 LKEVLEAL-NPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHHHHH-T--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred HHHHHHhh-CcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence 33444442 35667899999999999999999988779999999999999999998776667899999988764321 12
Q ss_pred C-CCCcccEEEe
Q psy1107 146 V-PHNSVDIATL 156 (218)
Q Consensus 146 ~-~~~~~D~i~~ 156 (218)
. ...++|.|++
T Consensus 88 ~~~~~~~dgiL~ 99 (310)
T PF01795_consen 88 LNGINKVDGILF 99 (310)
T ss_dssp TTTTS-EEEEEE
T ss_pred ccCCCccCEEEE
Confidence 2 3347888877
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.003 Score=48.26 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=62.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
-.+++||-+|-+- ..++.++..++..+|+.+|+++..++..+..++..+.++..+..|+.+.- +..+ .++||++++.
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~L-P~~~-~~~fD~f~TD 119 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPL-PEEL-RGKFDVFFTD 119 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTT-SS-BSEEEE-
T ss_pred ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccC-CHHH-hcCCCEEEeC
Confidence 3578999998553 23334444444569999999999999999888777767999999988731 1112 3699999874
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
-. . .++...-++.+....||..|...+..++..
T Consensus 120 PP-y--T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 120 PP-Y--TPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp ---S--SHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred CC-C--CHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 21 1 124567788999999987663334343333
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0023 Score=47.12 Aligned_cols=109 Identities=16% Similarity=0.101 Sum_probs=65.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHH----------HHHHHHhCCcccCCCceEEeccCCCcccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPR----------AVNFFKLNPLYDASKMNVFPCDVTEDDIL 143 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~----------~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 143 (218)
....++.+|+|+-.|.|.++.-++.. +|...|+++-..+. +-..+++... .|+..+..+...
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~---aN~e~~~~~~~A---- 116 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY---ANVEVIGKPLVA---- 116 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh---hhhhhhCCcccc----
Confidence 55678999999999999999888765 56667777643332 1111111100 122222222222
Q ss_pred cCCCCCcccEEEechhhc-----CCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 144 NQVPHNSVDIATLIFVLS-----AIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 144 ~~~~~~~~D~i~~~~~l~-----~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.. +....|++......| .+++.....+...+++.|||||.+++.++.
T Consensus 117 ~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 117 LG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 11 233456555532222 233567788999999999999999998744
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0022 Score=52.12 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=63.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc--------C--------CccEEEEEeCCHHHHHHHHhCCccc------CCCc--e
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW--------S--------KICYIHACDISPRAVNFFKLNPLYD------ASKM--N 131 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~--------~--------~~~~v~~~D~s~~~~~~~~~~~~~~------~~~i--~ 131 (218)
......+|+|+||.+|..+..+... + |..+++--|.-..-....-...... ..++ .
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 3456679999999999988777643 1 2346777775443322222221111 1222 2
Q ss_pred EEeccCCCcccccCCCCCcccEEEechhhcCCC--cch-----------------------------------HHHHHHH
Q psy1107 132 VFPCDVTEDDILNQVPHNSVDIATLIFVLSAIH--PNK-----------------------------------FSTVVKN 174 (218)
Q Consensus 132 ~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~--~~~-----------------------------------~~~~l~~ 174 (218)
-+.+.+.. .-+|.++.|++++...+|+++ |.. +..+|+.
T Consensus 93 gvpgSFy~----rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~ 168 (334)
T PF03492_consen 93 GVPGSFYG----RLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKA 168 (334)
T ss_dssp EEES-TTS------S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhh----ccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33455655 567888999999998888886 211 2244455
Q ss_pred HHHhccCCeEEEEEecCCCc
Q psy1107 175 LFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 175 ~~~~Lk~gG~li~~~~~~~~ 194 (218)
=.+-|+|||++++.-.++.+
T Consensus 169 Ra~ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 169 RAEELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HHHHEEEEEEEEEEEEE-ST
T ss_pred hhheeccCcEEEEEEeeccc
Confidence 56778999999998877666
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG2793|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0042 Score=47.93 Aligned_cols=113 Identities=17% Similarity=-0.002 Sum_probs=68.3
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC------CcccCCCceEEeccCCCcccccCCCCCccc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN------PLYDASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~------~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
+..+||++|+|+|-.+..++... ...|...|...........+ ....+..+.....+..+...........+|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 56689999999997777776644 35888888744332222221 111223555555555443222222221289
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+|++..++..- +....++..++.+|-.+|.+++.-.-+++
T Consensus 165 lilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~~lr~~ 204 (248)
T KOG2793|consen 165 LILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAYPLRRD 204 (248)
T ss_pred EEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEEecccc
Confidence 99999887755 46667777788888888855555444443
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00053 Score=57.42 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=64.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHH----HHHHHHhCCcccCCCceEEeccCCCcccccCCCCCccc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPR----AVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~----~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
...-..|+|+.+|.|.++..+.+. .|+.+..-+. .+...-.+ -+.-...|..+ ..+....+||
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~----~VWVMNVVP~~~~ntL~vIydR------GLIG~yhDWCE---~fsTYPRTYD 429 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD----PVWVMNVVPVSGPNTLPVIYDR------GLIGVYHDWCE---AFSTYPRTYD 429 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC----CceEEEecccCCCCcchhhhhc------ccchhccchhh---ccCCCCcchh
Confidence 345679999999999999888754 2444443332 11111111 11111123333 1233345899
Q ss_pred EEEechhhcCCC-cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|.+..++.... .-+...++-++-|+|+|+|.+++.|
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 999998887654 3467788999999999999999977
|
; GO: 0008168 methyltransferase activity |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0012 Score=52.33 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=44.4
Q ss_pred CcEEEEecCCCchh-HHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-C--CCceEEeccCCCcccccC--CCCCcccE
Q psy1107 80 EGVLLEVGCGVGNF-IFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-A--SKMNVFPCDVTEDDILNQ--VPHNSVDI 153 (218)
Q Consensus 80 ~~~vLDiGcG~G~~-~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-~--~~i~~~~~d~~~~~~~~~--~~~~~~D~ 153 (218)
..++||||+|.... .+..+..+ +++++|.|+++.+++.|+.+...+ . .+|.+....-.. .++.. .+...||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~-~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPD-NIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST--SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcc-ccchhhhcccceeeE
Confidence 56899999997644 22223333 589999999999999999987665 2 567776553211 11111 22358999
Q ss_pred EEechhhcCCC
Q psy1107 154 ATLIFVLSAIH 164 (218)
Q Consensus 154 i~~~~~l~~~~ 164 (218)
.+|+-.++...
T Consensus 181 tmCNPPFy~s~ 191 (299)
T PF05971_consen 181 TMCNPPFYSSQ 191 (299)
T ss_dssp EEE-----SS-
T ss_pred EecCCccccCh
Confidence 99987666443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG2798|consensus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0062 Score=48.19 Aligned_cols=37 Identities=19% Similarity=0.461 Sum_probs=30.6
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
++||+|+..+.+... .+....++.+..+|||||.++=
T Consensus 258 ~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred CccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEe
Confidence 479999887776655 5788899999999999998774
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.008 Score=51.47 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=70.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCC----ccEEEEEeCCHHHHHHHHhCCcccCCC--ceEEeccCCCccccc-CCCCCc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSK----ICYIHACDISPRAVNFFKLNPLYDASK--MNVFPCDVTEDDILN-QVPHNS 150 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~----~~~v~~~D~s~~~~~~~~~~~~~~~~~--i~~~~~d~~~~~~~~-~~~~~~ 150 (218)
.+..+|+|..||+|.+.....+... ...++|.|+++.....|+.+.--.+.+ +.....|-....... ......
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 4566999999999999877765531 367999999999999999885544322 344444433321111 123357
Q ss_pred ccEEEechhhc--------------------C-CCc--chHHHHHHHHHHhccCCeEEEE
Q psy1107 151 VDIATLIFVLS--------------------A-IHP--NKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 151 ~D~i~~~~~l~--------------------~-~~~--~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
||.|+++-.+. . +++ .....++..+...|+|||...+
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 89888844332 0 111 1225788999999999885544
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0023 Score=49.27 Aligned_cols=74 Identities=14% Similarity=0.257 Sum_probs=54.7
Q ss_pred CCCc--EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-------C---CCceEEeccCCCcccccC
Q psy1107 78 VGEG--VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-------A---SKMNVFPCDVTEDDILNQ 145 (218)
Q Consensus 78 ~~~~--~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-------~---~~i~~~~~d~~~~~~~~~ 145 (218)
.++. +|||+.+|.|..+..++..+ ++|+++|-++......+...... . .++++++.|.... ...
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~--L~~ 160 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA--LTD 160 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH--Hhh
Confidence 4444 99999999999999999886 68999999998887777654331 1 3577777776542 222
Q ss_pred CCCCcccEEEe
Q psy1107 146 VPHNSVDIATL 156 (218)
Q Consensus 146 ~~~~~~D~i~~ 156 (218)
.+. +||+|++
T Consensus 161 ~~~-~fDVVYl 170 (250)
T PRK10742 161 ITP-RPQVVYL 170 (250)
T ss_pred CCC-CCcEEEE
Confidence 333 7999998
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00041 Score=46.21 Aligned_cols=39 Identities=21% Similarity=0.491 Sum_probs=30.7
Q ss_pred cccEEEechhhcCCC----cchHHHHHHHHHHhccCCeEEEEE
Q psy1107 150 SVDIATLIFVLSAIH----PNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~----~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
.||+|+|..|.-+++ ++....+++.+.+.|+|||.|++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 489999988766553 355778999999999999999884
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG1562|consensus | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0044 Score=48.63 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=79.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc-----ccCCCceEEeccCCCcccccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL-----YDASKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~-----~~~~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
....+++++|-||.|.|...+..+..-.-..+..+|++...++..++-.. ..+.++.++.+|... +....+.+
T Consensus 117 ~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~--fl~~~~~~ 194 (337)
T KOG1562|consen 117 CSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL--FLEDLKEN 194 (337)
T ss_pred ccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH--HHHHhccC
Confidence 33457789999999999999888876333478899999999998887643 234678888887654 22345567
Q ss_pred cccEEEechhhcCCCc--chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHP--NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~--~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+||+|+.-..=--.|. --...++..+.+.||++|+++...
T Consensus 195 ~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9999997432111110 013577788899999999888754
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0038 Score=50.46 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=74.6
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-CCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-ASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
..+|||.=+|+|.=++.++...+..+++.=|+|+.+++..+.|...+ +.+...+..|..... .-....||+|=..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm---~~~~~~fd~IDiD- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALL---HELHRAFDVIDID- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHH---HhcCCCccEEecC-
Confidence 78999999999999988887765458999999999999999997765 445555555543311 1112578888542
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|...+..+++.+.+.++.||+|.+..
T Consensus 129 -----PFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 -----PFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred -----CCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 22345578899999999999998854
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0028 Score=52.28 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=71.5
Q ss_pred CCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC--C-CceEEeccCCCcccccCCCCCcccEE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA--S-KMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~--~-~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
.+.++||.=+|+|.=++.++.. ....+|++-|+|+.+++..+.|...++ . .+.+.+.|+.... ......||+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll---~~~~~~fD~I 125 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL---YSRQERFDVI 125 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH---CHSTT-EEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh---hhccccCCEE
Confidence 4579999999999998888876 333589999999999999999866554 2 3566676765421 1234589999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
=.. |..-+..+++.+.+.++.||+|.+..
T Consensus 126 DlD------PfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 126 DLD------PFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EE--------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred EeC------CCCCccHhHHHHHHHhhcCCEEEEec
Confidence 652 22456689999999999999999965
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.018 Score=44.19 Aligned_cols=113 Identities=17% Similarity=0.159 Sum_probs=77.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhCC-cccC-CCceEEeccCCCcccccCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLNP-LYDA-SKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~~-~~~~-~~i~~~~~d~~~~~~~~~~~~ 148 (218)
+..-.+...+|+|+|+..-++.+... +...+++.+|+|...+....... ..++ -.+.-+++|.... + ..++.
T Consensus 74 a~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~-L-a~~~~ 151 (321)
T COG4301 74 ASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELA-L-AELPR 151 (321)
T ss_pred HHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHH-H-hcccC
Confidence 33445789999999998877766654 33469999999998776554432 2222 3455556665432 1 12333
Q ss_pred CcccE-EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDI-ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~-i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+--+ ++....+..+.|++...++.++...++||-++++..
T Consensus 152 ~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 33333 444567889999999999999999999999999854
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0072 Score=47.38 Aligned_cols=109 Identities=11% Similarity=0.083 Sum_probs=71.8
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc----cCCCceEEeccCCCcccccC-----CCCCc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY----DASKMNVFPCDVTEDDILNQ-----VPHNS 150 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~----~~~~i~~~~~d~~~~~~~~~-----~~~~~ 150 (218)
..+|+.+|||.-.-...+.. .+...++-+|. +.+++.-++.... ...+.+++.+|+. .++... +....
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCC
Confidence 46899999997555544421 22346666665 3444444443332 2357889999988 443222 33334
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
--++++.+++.+++++....++..+.+...||+.+++-...
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 45888889999999889999999999888788877775433
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0091 Score=43.94 Aligned_cols=119 Identities=13% Similarity=0.204 Sum_probs=80.8
Q ss_pred HHHhhhcCCCcEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-
Q psy1107 71 HEFVNQDVGEGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ- 145 (218)
Q Consensus 71 ~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~- 145 (218)
.+++ ...++..|+|+|.-.|..++.+|.. +...++.++|++-...+-+... .+.+.|+.++-.+.+..++
T Consensus 62 Qell-w~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----~p~i~f~egss~dpai~eqi 136 (237)
T COG3510 62 QELL-WELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----VPDILFIEGSSTDPAIAEQI 136 (237)
T ss_pred HHHH-HhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----CCCeEEEeCCCCCHHHHHHH
Confidence 4443 3446779999999998877776653 5557999999988765554432 2579999999888665332
Q ss_pred --CCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 146 --VPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 146 --~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
..++.--+.+|...-|+. +...+.++-+..+|..|-++++-|-..++.+
T Consensus 137 ~~~~~~y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 137 RRLKNEYPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred HHHhcCCCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 222222455565655655 4566777878899999999999775544443
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.021 Score=46.25 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=69.9
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....|+.+|+=+|+| .|..+.++++..- ++|+++|.+++..+.|++.-. .+++... +.+....... .+|+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA-----d~~i~~~--~~~~~~~~~~-~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA-----DHVINSS--DSDALEAVKE-IADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC-----cEEEEcC--CchhhHHhHh-hCcE
Confidence 345678899888886 6688888887532 799999999999999998722 2233221 2111122222 3899
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
|+.. . . ...+....+.|+++|.+++.....
T Consensus 233 ii~t-----v---~-~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 233 IIDT-----V---G-PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred EEEC-----C---C-hhhHHHHHHHHhcCCEEEEECCCC
Confidence 9853 2 2 456788889999999999988774
|
|
| >KOG1253|consensus | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0018 Score=54.08 Aligned_cols=109 Identities=13% Similarity=0.033 Sum_probs=81.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCc-cEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~-~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....++.+|||.=|++|.-++.++...++ .++++-|.++.+++..+.+...+. .-+...+.|+...++........|
T Consensus 105 ~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 105 KREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred hhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcccccccc
Confidence 44567789999999999999999877554 389999999999999999876553 234455566655444444445689
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|-+. |......+++.+.+.++.||+|++..
T Consensus 185 DvIDLD------PyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLD------PYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecC------CCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 988642 23455679999999999999999965
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.01 Score=47.36 Aligned_cols=107 Identities=12% Similarity=0.115 Sum_probs=75.8
Q ss_pred CcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC----CCceEEeccCCCcccccCCC-----CC
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA----SKMNVFPCDVTEDDILNQVP-----HN 149 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~-----~~ 149 (218)
..+|+-+|||-- ++.+.-..| ...++-+|. |+.++.=++.....+ ...+++.+|+.+.++...+. ..
T Consensus 93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 689999999863 333322333 357777776 566666555554433 37899999999766654444 33
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.--++++.+++.+++++...+++..+.....||-.+++.-
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 4458888999999999999999999999988888666643
|
|
| >KOG4058|consensus | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.012 Score=41.42 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=72.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc--cCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY--DASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
.++..+.+|+|+|.|......++.+ -...+|+++++-.+.+++-.+-. ......|...|+-+.++ . .|..+
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl----~--dy~~v 142 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL----R--DYRNV 142 (199)
T ss_pred CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc----c--ccceE
Confidence 4556799999999999998888776 35789999999998888765332 23567787777765332 1 24333
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+...+- +....+-.++..-+..|..++..-|....
T Consensus 143 viFgae-----s~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 143 VIFGAE-----SVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred EEeehH-----HHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 332221 23334556777788888888887766544
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.017 Score=45.76 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=52.6
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhc
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLS 161 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~ 161 (218)
+++|+.||.|.++.-+...+- ..++++|+++.+++..+.+... ...+.|+.+.... .+ ...+|+++......
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~~-----~~~~~Di~~~~~~-~~-~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFPN-----KLIEGDITKIDEK-DF-IPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCCC-----CCccCccccCchh-hc-CCCCCEEEeCCCCh
Confidence 689999999999888887763 3688899999999999887542 1455676663211 11 24689999855444
Q ss_pred CC
Q psy1107 162 AI 163 (218)
Q Consensus 162 ~~ 163 (218)
.+
T Consensus 74 ~f 75 (275)
T cd00315 74 PF 75 (275)
T ss_pred hh
Confidence 33
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0058 Score=45.26 Aligned_cols=95 Identities=12% Similarity=0.203 Sum_probs=58.4
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC----CCceEEeccCCCccccc-----CCCCCc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA----SKMNVFPCDVTEDDILN-----QVPHNS 150 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~-----~~~~~~ 150 (218)
..+|+.+|||.-.....+....+...++-+|. +.+++.-++.....+ .+.+++.+|+.+..+.. .+..+.
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 44999999998777766665444567777886 444444444433221 34678999999765432 233445
Q ss_pred ccEEEechhhcCCCcchHHHHHHHH
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNL 175 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~ 175 (218)
.-++++.+++.+++++....++..+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 5688888999999877777776654
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.024 Score=37.68 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=26.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCH
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISP 113 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~ 113 (218)
.+....+|+|||+|.+..-+.+.+ ..=.|+|...
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EG--y~G~GiD~R~ 90 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEG--YPGWGIDARR 90 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCC--CCcccccccc
Confidence 456789999999999998887776 3567888643
|
; GO: 0008168 methyltransferase activity |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.017 Score=43.91 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=35.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHh
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKL 121 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~ 121 (218)
....++..|||.-||+|..+..+.+.+ ++.+|+|+++...+.|++
T Consensus 187 ~~t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 187 ASTNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHS-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred hhhccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 445778999999999999998887776 689999999999998863
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0082 Score=49.67 Aligned_cols=96 Identities=18% Similarity=0.145 Sum_probs=61.3
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
..-+||||.|+|.++...+..+.+ .+++++.-..+.+.|+.....++ .++.++.-.-++.. ..+....|+++..
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~---vg~~~RadI~v~e 142 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK---VGGSSRADIAVRE 142 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee---ecCcchhhhhhHh
Confidence 356899999999999888877755 79999999999999998766555 56666654333311 1122346777654
Q ss_pred hhhcCCCcchHHHHHHHHHHhc
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIML 179 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~L 179 (218)
.+...+--+.....++.+.+.|
T Consensus 143 ~fdtEligeGalps~qhAh~~L 164 (636)
T KOG1501|consen 143 DFDTELIGEGALPSLQHAHDML 164 (636)
T ss_pred hhhhhhhccccchhHHHHHHHh
Confidence 3333222222334555555554
|
|
| >KOG2671|consensus | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0089 Score=47.93 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=74.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHH-------HhCCcccC---CCceEEeccCCCccccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFF-------KLNPLYDA---SKMNVFPCDVTEDDILN 144 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~-------~~~~~~~~---~~i~~~~~d~~~~~~~~ 144 (218)
+...++..|+|.-.|+|.+....+..+ +-|+|.||+-.++... +.+++.++ .=+.++..|+.+..+..
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FG--a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhc--ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 667889999999999999998888776 5899999998887632 22333333 22556677887754432
Q ss_pred CCCCCcccEEEech------------------------hhcCCCc-------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 145 QVPHNSVDIATLIF------------------------VLSAIHP-------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 145 ~~~~~~~D~i~~~~------------------------~l~~~~~-------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.-.||.|+|.- -..|.|. +.....+.-..+.|..||++++.-
T Consensus 282 ---n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 282 ---NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred ---cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 45899999910 0112221 112355566789999999999864
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.023 Score=45.19 Aligned_cols=48 Identities=6% Similarity=-0.163 Sum_probs=41.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL 124 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~ 124 (218)
....++..|||.-||+|..+....+.+ ++++|+|++++..+.|+.++.
T Consensus 204 ~~S~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 204 ASSNPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HhCCCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHH
Confidence 445789999999999999998777765 699999999999999998853
|
|
| >KOG0822|consensus | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.034 Score=47.19 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=74.3
Q ss_pred CcEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhC-CcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLN-PLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...|.-+|+|.|.+.....+. ....++++++=+|.++...+.. ......++.++.+|++. ...|....|++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~----w~ap~eq~DI~ 443 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRK----WNAPREQADII 443 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccc----cCCchhhccch
Confidence 457789999999887655443 3346899999999998888764 33445789999999987 23333578988
Q ss_pred EechhhcCCCc-chHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 155 TLIFVLSAIHP-NKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 155 ~~~~~l~~~~~-~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
++ ..+..+.+ +.-..-+.-+.+.|||+|+.+-..|..
T Consensus 444 VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtS 481 (649)
T KOG0822|consen 444 VS-ELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTS 481 (649)
T ss_pred HH-HhhccccCccCCHHHHHHHHhhcCCCceEccchhhh
Confidence 76 22222221 223356677788999999877665443
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.03 Score=43.70 Aligned_cols=47 Identities=23% Similarity=0.218 Sum_probs=35.0
Q ss_pred CCcEEEEecCCCchhHHHHhhcC--------CccEEEEEeCCHHHHHHHHhCCcc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS--------KICYIHACDISPRAVNFFKLNPLY 125 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~--------~~~~v~~~D~s~~~~~~~~~~~~~ 125 (218)
.+.+|+|+|+|+|.++..++... ...+++.+|+|+...+.-++....
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 35799999999999998887642 235899999999988777776544
|
; PDB: 4F3N_A 1ZKD_B. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.027 Score=38.67 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=40.4
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL 124 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~ 124 (218)
-++.+|+|||++.|..++.++..+.. .|++++.++...+..+.+.+
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK-~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGAS-FVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCcc-EEEEeccCHHHHHHHHHHhh
Confidence 36789999999999999999988754 99999999999999988654
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.031 Score=46.22 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=55.0
Q ss_pred CCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 128 SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 128 ~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.++.++..++.+. ....+.+++|.++++....+++++.....+..+.+.++|||.+++.......
T Consensus 275 drv~i~t~si~~~--L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEV--LRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHH--HHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 5788888887662 3346678999999999999999999999999999999999999998866444
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.071 Score=41.36 Aligned_cols=110 Identities=17% Similarity=0.183 Sum_probs=62.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhc-----CCccEEEEEeCCH--------------------------HHHHHHHhCCcc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSW-----SKICYIHACDISP--------------------------RAVNFFKLNPLY 125 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~-----~~~~~v~~~D~s~--------------------------~~~~~~~~~~~~ 125 (218)
..-+..|+|+||-.|..+..++.. .++.+++++|.-. ...+..+.++..
T Consensus 72 ~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~ 151 (248)
T PF05711_consen 72 EDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR 151 (248)
T ss_dssp TTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred cCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence 345679999999999877655322 2456888988321 234555556554
Q ss_pred cC---CCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 126 DA---SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 126 ~~---~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
.+ .++.++.+.+.+. + ...+..++-++.+-. .+ .+-....|..++..|.|||++++-||+.
T Consensus 152 ~gl~~~~v~~vkG~F~dT-L-p~~p~~~IAll~lD~---Dl-YesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 152 YGLLDDNVRFVKGWFPDT-L-PDAPIERIALLHLDC---DL-YESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp TTTSSTTEEEEES-HHHH-C-CC-TT--EEEEEE------S-HHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred cCCCcccEEEECCcchhh-h-ccCCCccEEEEEEec---cc-hHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 33 5788888877442 1 122233333332211 11 1345678888999999999999999886
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >KOG2539|consensus | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.089 Score=44.07 Aligned_cols=114 Identities=16% Similarity=0.013 Sum_probs=69.7
Q ss_pred cCCCcEEEEecCCCchh--HHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCC-Ccc
Q psy1107 77 DVGEGVLLEVGCGVGNF--IFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPH-NSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~--~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~-~~~ 151 (218)
...+..+.|+|.|.|.- +....-......++.||.+..+......+..... ........-+.. ...+.+. ..|
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r--~~~pi~~~~~y 275 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR--QRLPIDIKNGY 275 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc--ccCCCCcccce
Confidence 34567888998886644 4444333445689999999999888877655411 112121211211 1233333 459
Q ss_pred cEEEechhhcCCC-cchHHHHHH-HHHHhccCCeEEEEEecCC
Q psy1107 152 DIATLIFVLSAIH-PNKFSTVVK-NLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 152 D~i~~~~~l~~~~-~~~~~~~l~-~~~~~Lk~gG~li~~~~~~ 192 (218)
|+|++.+.++++. ......+.. .++...++||.+++.+-+.
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 9999999998886 233333443 3466678999999987443
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.11 Score=35.70 Aligned_cols=104 Identities=21% Similarity=0.263 Sum_probs=52.2
Q ss_pred HHHHhhhcCCCcEEEEecCCCch-hHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCC
Q psy1107 70 FHEFVNQDVGEGVLLEVGCGVGN-FIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 70 ~~~~~~~~~~~~~vLDiGcG~G~-~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 148 (218)
+.+.+....+..+|+|+|-|.=. .+..+.+.+ ..++++|+.+.. + +..+.++.-|++++... +-
T Consensus 4 ~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~~---a-------~~g~~~v~DDif~P~l~--iY- 68 (127)
T PF03686_consen 4 FAEYIARLNNYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPRK---A-------PEGVNFVVDDIFNPNLE--IY- 68 (127)
T ss_dssp HHHHHHHHS-SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S--------------STTEE---SSS--HH--HH-
T ss_pred HHHHHHHhCCCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECcccc---c-------ccCcceeeecccCCCHH--Hh-
Confidence 44444545566799999999654 355555555 699999998871 1 13578888888885431 11
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
...|+|.+... |++....+ ..+.+. -|.-+++...+....
T Consensus 69 ~~a~lIYSiRP----P~El~~~i-l~lA~~--v~adlii~pL~~e~~ 108 (127)
T PF03686_consen 69 EGADLIYSIRP----PPELQPPI-LELAKK--VGADLIIRPLGGESP 108 (127)
T ss_dssp TTEEEEEEES------TTSHHHH-HHHHHH--HT-EEEEE-BTTB--
T ss_pred cCCcEEEEeCC----ChHHhHHH-HHHHHH--hCCCEEEECCCCCCC
Confidence 25789987532 23334444 444443 356688877775554
|
; PDB: 2K4M_A. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.059 Score=42.92 Aligned_cols=110 Identities=20% Similarity=0.180 Sum_probs=70.2
Q ss_pred CcEEEEecCCCchhHHHHhhcC--------------------CccEEEEEeCCH--HHHHHHHhCCccc-----------
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS--------------------KICYIHACDISP--RAVNFFKLNPLYD----------- 126 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~--------------------~~~~v~~~D~s~--~~~~~~~~~~~~~----------- 126 (218)
..+||-||.|.|.-...++... +...++.+|+.. ..++.....+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999986555554332 124899999876 2333333321111
Q ss_pred -----C--CCceEEeccCCCccccc---CCCCCcccEEEechhhcCCC---cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 127 -----A--SKMNVFPCDVTEDDILN---QVPHNSVDIATLIFVLSAIH---PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 127 -----~--~~i~~~~~d~~~~~~~~---~~~~~~~D~i~~~~~l~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+ -++.|.+.|+....... -+...+.++|.+.+.+..+- .....+++..+...++||-+|+|+|
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 1 35788888887743211 11223578888877655432 2345688899999999999999987
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.12 Score=42.31 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=66.1
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEec-cCCCcccccCCCC-CcccEE
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPC-DVTEDDILNQVPH-NSVDIA 154 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~-~~~D~i 154 (218)
.++.+|+=+||| .|.++..+++.....+++++|.++..++.|++..... .+..... +... . ...... ..+|++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~--~~~~~~~~~~~~-~-~~~~t~g~g~D~v 242 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD--VVVNPSEDDAGA-E-ILELTGGRGADVV 242 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe--EeecCccccHHH-H-HHHHhCCCCCCEE
Confidence 344499999999 5666677777655569999999999999998842211 0000000 0000 0 011112 268988
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+-... ....+..+.++++|+|.+++.......
T Consensus 243 ie~~G--------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 243 IEAVG--------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EECCC--------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 84321 234788899999999999997755444
|
|
| >KOG2920|consensus | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.015 Score=45.47 Aligned_cols=108 Identities=13% Similarity=0.175 Sum_probs=60.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHH-hCCcc-------cCCC---ceEEeccCCCcccccC
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFK-LNPLY-------DASK---MNVFPCDVTEDDILNQ 145 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~-~~~~~-------~~~~---i~~~~~d~~~~~~~~~ 145 (218)
...+++|||+|||+|...+.+...+. ..+...|++...+..-. .+... ...+ ..+...+..+ ....
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~d--g~~~ 190 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSD--GVFN 190 (282)
T ss_pred EecCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhcccceecccccccc--chhh
Confidence 45788999999999998888776553 47788888887763221 11100 0001 1111110101 0000
Q ss_pred CCC-CcccEEEechhhcCCCcchHHHH-HHHHHHhccCCeEEEEEe
Q psy1107 146 VPH-NSVDIATLIFVLSAIHPNKFSTV-VKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 146 ~~~-~~~D~i~~~~~l~~~~~~~~~~~-l~~~~~~Lk~gG~li~~~ 189 (218)
... ..||+|.....+.... ....+ ......+++++|.++++.
T Consensus 191 ~t~~~~ydlIlsSetiy~~~--~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 191 HTERTHYDLILSSETIYSID--SLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred hccccchhhhhhhhhhhCcc--hhhhhHhhhhhhcCCccchhhhhh
Confidence 111 2789998877665442 33333 455566778999887754
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.11 Score=43.11 Aligned_cols=107 Identities=12% Similarity=0.113 Sum_probs=66.3
Q ss_pred hcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc-----ccccCCCCC
Q psy1107 76 QDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED-----DILNQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~~~ 149 (218)
...++.+||..|||. |..+..+++.....++++++.++...+.++.... ..++. .... .+.......
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~-----~~vi~--~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG-----AETIN--FEEVDDVVEALRELTGGR 253 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-----cEEEc--CCcchHHHHHHHHHcCCC
Confidence 345678899999987 8888888877533369999999999999887521 11111 1111 011112223
Q ss_pred cccEEEechhhc-----------CC--CcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLS-----------AI--HPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~-----------~~--~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+|+|+....-. |. +..+....+..+.+.++++|.++...
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 689887632100 00 11123457788899999999998864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.06 Score=43.38 Aligned_cols=74 Identities=24% Similarity=0.271 Sum_probs=52.5
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhc
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLS 161 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~ 161 (218)
+++|+.||.|.+..-+...+- -.+.++|+++.+.+.-+.+.. .....|+.+.+. ..++. .+|+++......
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~-~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~-~~l~~-~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF-EVVWAVEIDPDACETYKANFP------EVICGDITEIDP-SDLPK-DVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE-EEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHH-HHHHH-T-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCc-EEEEEeecCHHHHHhhhhccc------cccccccccccc-ccccc-cceEEEeccCCc
Confidence 799999999999998888773 378899999999998887743 667788877542 13443 599999866555
Q ss_pred CCC
Q psy1107 162 AIH 164 (218)
Q Consensus 162 ~~~ 164 (218)
.++
T Consensus 73 ~fS 75 (335)
T PF00145_consen 73 GFS 75 (335)
T ss_dssp TTS
T ss_pred eEe
Confidence 544
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.026 Score=40.42 Aligned_cols=107 Identities=15% Similarity=0.080 Sum_probs=58.9
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
+++.+-+|+.. .+...++-.+-..++..+++++-.+..-.+ ..-.++...|+... .....++||.+.|..+
T Consensus 2 ~~~g~V~GS~~-PwvEv~aL~~GA~~iltveyn~L~i~~~~~-----dr~ssi~p~df~~~---~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQ-PWVEVMALQHGAAKILTVEYNKLEIQEEFR-----DRLSSILPVDFAKN---WQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCC-chhhHHHHHcCCceEEEEeecccccCcccc-----cccccccHHHHHHH---HHHhhccchhhheech
Confidence 45667777764 333334333333578888876522111100 00112222333221 1122358999999888
Q ss_pred hcCCC---------cchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 160 LSAIH---------PNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 160 l~~~~---------~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
++|+- |....+.+.++..+|||||.|++.-.-+.+.
T Consensus 73 iEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~ 117 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDA 117 (177)
T ss_pred hccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcc
Confidence 88773 1223466778899999999999966433443
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.091 Score=40.33 Aligned_cols=47 Identities=9% Similarity=-0.048 Sum_probs=40.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL 124 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~ 124 (218)
...++..|||.-||+|..+....+.+ .+++|+|+++.-.+.+.++..
T Consensus 160 ~s~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 160 FTHPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred hCCCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHH
Confidence 45688899999999999998887765 589999999999998887743
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.053 Score=41.59 Aligned_cols=75 Identities=23% Similarity=0.346 Sum_probs=44.0
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHh-------CCcc---cCCCceEEeccCCCcccccCCCCCc
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKL-------NPLY---DASKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~-------~~~~---~~~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
.+|||.-+|-|..+..++..+ ++|++++-|+......+. .... .-.++.+++.|..+- ...+..+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~---L~~~~~s 151 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY---LRQPDNS 151 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH---CCCHSS-
T ss_pred CEEEECCCcchHHHHHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH---HhhcCCC
Confidence 499999999999999988765 689999999866544442 1111 013688888887662 3355679
Q ss_pred ccEEEechhh
Q psy1107 151 VDIATLIFVL 160 (218)
Q Consensus 151 ~D~i~~~~~l 160 (218)
+|+|++--++
T Consensus 152 ~DVVY~DPMF 161 (234)
T PF04445_consen 152 FDVVYFDPMF 161 (234)
T ss_dssp -SEEEE--S-
T ss_pred CCEEEECCCC
Confidence 9999984443
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.19 Score=33.86 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=62.2
Q ss_pred CCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCc
Q psy1107 88 CGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHP 165 (218)
Q Consensus 88 cG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~ 165 (218)
||.|..+..+++.. ....++.+|.++..++.+... .+.++.+|..+...+....-.+.+.+++.. +.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----~~ 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------GVEVIYGDATDPEVLERAGIEKADAVVILT-----DD 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------TSEEEES-TTSHHHHHHTTGGCESEEEEES-----SS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------ccccccccchhhhHHhhcCccccCEEEEcc-----CC
Confidence 56666777776542 224899999999999988865 367889999987655444445788777642 22
Q ss_pred chHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 166 NKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 166 ~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+.....+-...+.+.|...+++.-.....
T Consensus 73 d~~n~~~~~~~r~~~~~~~ii~~~~~~~~ 101 (116)
T PF02254_consen 73 DEENLLIALLARELNPDIRIIARVNDPEN 101 (116)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 33344445556777788888876644333
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >KOG0024|consensus | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.13 Score=41.15 Aligned_cols=110 Identities=11% Similarity=0.087 Sum_probs=68.9
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEec-c-CCC--cccccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPC-D-VTE--DDILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~-d-~~~--~~~~~~~~~~ 149 (218)
.....+.+||-+|+| .|..+...++..-..+|+.+|.++..++.|++. ... .+..... + ... ......+...
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga~--~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GAT--VTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CCe--EEeeccccccHHHHHHHHHhhcccc
Confidence 445678999999999 466666666664445999999999999999984 211 1111100 0 000 0000122223
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
.+|+.+-.. .....++.+...++++|.+++..++....
T Consensus 242 ~~d~~~dCs--------G~~~~~~aai~a~r~gGt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 242 QPDVTFDCS--------GAEVTIRAAIKATRSGGTVVLVGMGAEEI 279 (354)
T ss_pred CCCeEEEcc--------CchHHHHHHHHHhccCCEEEEeccCCCcc
Confidence 477777432 34456777788999999999888775554
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.1 Score=39.77 Aligned_cols=96 Identities=9% Similarity=0.050 Sum_probs=54.7
Q ss_pred hHHHHHHh-----hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCC
Q psy1107 67 VNEFHEFV-----NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVT 138 (218)
Q Consensus 67 ~~~~~~~~-----~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~ 138 (218)
.+.+.+++ ....+..++||||.|.-..=-.+-..-...+.+|.|+++.+++.|+.....++ ..+......=
T Consensus 61 ih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~- 139 (292)
T COG3129 61 IHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKD- 139 (292)
T ss_pred HHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccC-
Confidence 34556665 22246678999998864321111111123689999999999999998765543 2333332210
Q ss_pred CcccccC-C-CCCcccEEEechhhcCC
Q psy1107 139 EDDILNQ-V-PHNSVDIATLIFVLSAI 163 (218)
Q Consensus 139 ~~~~~~~-~-~~~~~D~i~~~~~l~~~ 163 (218)
...++.. . .+..||+.+|+-.+|..
T Consensus 140 ~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 140 SDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccccccccccceeeeEecCCCcchh
Confidence 0111122 1 24589999998766643
|
|
| >KOG2651|consensus | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.12 Score=42.27 Aligned_cols=47 Identities=21% Similarity=0.091 Sum_probs=38.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~ 122 (218)
....+..+++|+|.|.|+++..+.-.+ +..|.+||-|....+.|+..
T Consensus 149 ~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 149 SDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHHH
Confidence 444567899999999999998886554 46999999998887777654
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.097 Score=46.74 Aligned_cols=109 Identities=15% Similarity=0.055 Sum_probs=60.4
Q ss_pred CCCcEEEEecCCCchhHHHHhhc-------CC-----ccEEEEEeCCH---HHHHHHHhCC-----------ccc-----
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSW-------SK-----ICYIHACDISP---RAVNFFKLNP-----------LYD----- 126 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~-------~~-----~~~v~~~D~s~---~~~~~~~~~~-----------~~~----- 126 (218)
.+..+|+|+|.|+|......... .| ..+++.+|..+ ..+..+.... ...
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 44579999999999865554422 23 35899999644 2222222110 000
Q ss_pred --------CC--CceEEeccCCCcccccCCCCCcccEEEechhhcCCCcch-HHHHHHHHHHhccCCeEEEEEe
Q psy1107 127 --------AS--KMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNK-FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 127 --------~~--~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~-~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.. ++.+..+|+.+. ...+. ..+|++++-..--.-.|+. -..++..+.++++|||.|.-..
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~--~~~~~-~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANEL--LPQLD-ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHH--HHhcc-ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 01 233444555431 11122 4689998743211111222 2478899999999999888543
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.61 Score=40.22 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=64.1
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc---------ccc---
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD---------ILN--- 144 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~--- 144 (218)
.++.+|+=+||| .|..++..+... .+.|+++|.++..++.++..- ..+...|..+.+ ...
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslG------A~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMG------AEFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC------CeEEEeccccccccccchhhhcchhHH
Confidence 478999999999 566666666553 358999999999999998741 122212211100 000
Q ss_pred -----CCCC--CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 145 -----QVPH--NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 145 -----~~~~--~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+.. ..+|+|+.......-+ .+..+.+.+.+.+||||.++....
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~--aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKP--APKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCccc--CcchHHHHHHHhcCCCCEEEEEcc
Confidence 0011 3589998754322110 122335889999999998887654
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.11 Score=42.24 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=36.8
Q ss_pred CCCcEEEEecCCCchhHHHHhhc----CC----ccEEEEEeCCHHHHHHHHhCCc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSW----SK----ICYIHACDISPRAVNFFKLNPL 124 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~----~~----~~~v~~~D~s~~~~~~~~~~~~ 124 (218)
+.+..++|+|.|.|.++..++.. .| ..++..+++|++..+.=++..+
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 44678999999999998887754 33 4699999999988777666543
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.83 Score=37.20 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=58.0
Q ss_pred CCCcEEEEecCC-CchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+||-+||| .|..+..+++. ....+++++|.++..++.++.. .. .... -+..+ ...+|+|+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~-~~----~~~~-~~~~~--------~~g~d~vi 227 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFA-DE----TYLI-DDIPE--------DLAVDHAF 227 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhc-Cc----eeeh-hhhhh--------ccCCcEEE
Confidence 567899999986 45555666653 3235899999999888888641 11 1100 01111 11478887
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
-. .........+..+.++|+++|.+++...
T Consensus 228 D~-----~G~~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 228 EC-----VGGRGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred EC-----CCCCccHHHHHHHHHhCcCCcEEEEEee
Confidence 42 1100123567888899999999988664
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.72 Score=33.58 Aligned_cols=109 Identities=15% Similarity=0.005 Sum_probs=58.3
Q ss_pred ecCCCchhHHHHhhcCC-ccEEEEEeCCHHH--HHHHH---hCCccc--CCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 86 VGCGVGNFIFPLLSWSK-ICYIHACDISPRA--VNFFK---LNPLYD--ASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 86 iGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~--~~~~~---~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
||=|.=.++..++.... ...+++.-++... .+.-. .+.... ..-.-.+..|++............||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 44444455666666543 4466665444332 11111 111111 1122234567766432223356789999987
Q ss_pred hhhcCCC-----------cchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 158 FVLSAIH-----------PNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 158 ~~l~~~~-----------~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+.-.... ......++..+..+|+++|.+.+.--...+
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 7533310 112457788899999999999886544333
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.9 Score=36.96 Aligned_cols=98 Identities=13% Similarity=0.251 Sum_probs=58.9
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc-CCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN-QVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~~~D~i~ 155 (218)
.++.+||=.||| .|..+.++++..-..+++++|.++..++.+++.-. . .++ |..+.+... ....+.+|+|+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa----~-~vi--~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGA----D-KLV--NPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCC----c-EEe--cCCcccHHHHhccCCCCCEEE
Confidence 356788888886 56666667665322278999999999999886421 1 111 111111100 01123589887
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.. .. ....+..+.+.|++||.+++...
T Consensus 241 d~-----~G---~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 241 EV-----SG---HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EC-----CC---CHHHHHHHHHHhhcCCEEEEEcc
Confidence 42 21 12356778889999999998654
|
|
| >KOG1227|consensus | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.095 Score=41.45 Aligned_cols=95 Identities=19% Similarity=0.254 Sum_probs=60.9
Q ss_pred CCCcEEEEecCCCchhHH-HHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 78 VGEGVLLEVGCGVGNFIF-PLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~-~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..+..|+|+-+|-|.++. .+...+. ..|+++|.++.+++..++++..++ .....+.+|-. ..-+....|-|
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R-----~~~~~~~AdrV 266 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNR-----NPKPRLRADRV 266 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccc-----ccCccccchhe
Confidence 345789999999999998 5555553 489999999999999999876553 12233333322 23344567777
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGI 184 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~ 184 (218)
.+.. +| + -++-+..+.++|||.|-
T Consensus 267 nLGL----lP-S-se~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 267 NLGL----LP-S-SEQGWPTAIKALKPEGG 290 (351)
T ss_pred eecc----cc-c-cccchHHHHHHhhhcCC
Confidence 6642 22 1 12344456677777443
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.33 Score=33.29 Aligned_cols=88 Identities=22% Similarity=0.201 Sum_probs=58.5
Q ss_pred CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc----cccCCCCCcccEEEechhhcCCC
Q psy1107 89 GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD----ILNQVPHNSVDIATLIFVLSAIH 164 (218)
Q Consensus 89 G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~~~~~D~i~~~~~l~~~~ 164 (218)
|.|..+..+++..- .+++++|.++..++.+++.-. ..+ .|..+.+ +....+...+|+|+-. ..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga-----~~~--~~~~~~~~~~~i~~~~~~~~~d~vid~-----~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGA-----DHV--IDYSDDDFVEQIRELTGGRGVDVVIDC-----VG 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTE-----SEE--EETTTSSHHHHHHHHTTTSSEEEEEES-----SS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcc-----ccc--ccccccccccccccccccccceEEEEe-----cC
Confidence 35778888887754 799999999999999987621 111 1111211 1112233479999842 31
Q ss_pred cchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 165 PNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 165 ~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
-...++.+..+|+++|.+++.....
T Consensus 68 ---~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ---SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ---SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ---cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2468888999999999999987665
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=93.17 E-value=1.6 Score=31.56 Aligned_cols=100 Identities=10% Similarity=0.109 Sum_probs=62.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc-ccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI-LNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~~D~i~ 155 (218)
..+..+|+-|||=+-.....- ...+..++...|++...... +.+ .|..-|...... +..+ .+++|+|+
T Consensus 23 ~~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~--------~~~-~F~fyD~~~p~~~~~~l-~~~~d~vv 91 (162)
T PF10237_consen 23 ALDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQF--------GGD-EFVFYDYNEPEELPEEL-KGKFDVVV 91 (162)
T ss_pred cCCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhc--------CCc-ceEECCCCChhhhhhhc-CCCceEEE
Confidence 345689999999774444332 13455689999998765332 223 455555555321 1223 46999999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+--.+ +..+.+..+...+..++++++.+++..
T Consensus 92 ~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 92 IDPPF--LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred ECCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 85443 444555666666777778888888765
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.7 Score=41.07 Aligned_cols=104 Identities=18% Similarity=0.125 Sum_probs=59.1
Q ss_pred cEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhC---Cccc-------CCCceEEeccCCCccccc--
Q psy1107 81 GVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLN---PLYD-------ASKMNVFPCDVTEDDILN-- 144 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~---~~~~-------~~~i~~~~~d~~~~~~~~-- 144 (218)
..|+-+|+|.|.+.....+. +-..++++++=++.++...+.+ .... +..+.++..|+..-....
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 57899999999887666543 3456999999986543333222 1111 346899999988742211
Q ss_pred -----CCCCCcccEEEec----hhhcCCCcchHHHHHHHHHHhccCCeE
Q psy1107 145 -----QVPHNSVDIATLI----FVLSAIHPNKFSTVVKNLFIMLKSGGI 184 (218)
Q Consensus 145 -----~~~~~~~D~i~~~----~~l~~~~~~~~~~~l~~~~~~Lk~gG~ 184 (218)
+..-+++|+|++. +.-.-++|+.++.+-+.+..+.+.+|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 1112479999872 122233455544443333322223665
|
|
| >KOG2078|consensus | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.088 Score=43.60 Aligned_cols=61 Identities=26% Similarity=0.438 Sum_probs=49.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDV 137 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~ 137 (218)
....++..|+|+.||.|.++..++..+ ++|++-|.++++++..+.+.+.+- .++..+..|+
T Consensus 245 g~fk~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 245 GLFKPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred hccCCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence 335678899999999999999998876 899999999999999999876432 3366666554
|
|
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.19 Score=42.48 Aligned_cols=112 Identities=16% Similarity=0.085 Sum_probs=72.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCccc---ccCCCCCcccE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDI---LNQVPHNSVDI 153 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~---~~~~~~~~~D~ 153 (218)
.-...+|-+|-|.|.+...+....|..+++++++++.+++.+...+.... .+..++..|....-. -..-....||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 34568888899999998888777888899999999999999998865322 223333333322100 01123347888
Q ss_pred EEech---hhcCC--Ccc--hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIF---VLSAI--HPN--KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~---~l~~~--~~~--~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++..- -.+.+ ||. ....++..+...|.|.|.+++.-
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 87611 12222 111 23466778899999999988754
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.63 Score=41.19 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=63.7
Q ss_pred cEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
..|+=+|+| ..+..+++. ..+..++.+|.+++.++.+++. ....+.+|.++.+......-.+.|++++.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vv~~- 471 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY------GYKVYYGDATQLELLRAAGAEKAEAIVIT- 471 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------CCeEEEeeCCCHHHHHhcCCccCCEEEEE-
Confidence 355555554 455444432 1234899999999999988753 36678899998766544444568887763
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
.+.+.....+-...+.+.|...+++.........
T Consensus 472 ----~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~ 505 (601)
T PRK03659 472 ----CNEPEDTMKIVELCQQHFPHLHILARARGRVEAH 505 (601)
T ss_pred ----eCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence 2212222233334555778888888775544433
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.48 Score=38.54 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=54.1
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
..+++|+.||.|.+..-+...+-. -+.++|+++.+++.-+.+... ..+...|+..... ..+....+|+++....
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~-~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~-~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFE-IVFANEIDPPAVATYKANFPH----GDIILGDIKELDG-EALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCe-EEEEEecCHHHHHHHHHhCCC----CceeechHhhcCh-hhccccCCCEEEeCCC
Confidence 468999999999999888877743 788899999999998887552 3444555544211 1121116888888655
Q ss_pred hcCCC
Q psy1107 160 LSAIH 164 (218)
Q Consensus 160 l~~~~ 164 (218)
...++
T Consensus 77 CQ~FS 81 (328)
T COG0270 77 CQDFS 81 (328)
T ss_pred Ccchh
Confidence 55443
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.36 Score=38.99 Aligned_cols=72 Identities=18% Similarity=0.166 Sum_probs=49.3
Q ss_pred EEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcC
Q psy1107 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSA 162 (218)
Q Consensus 83 vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~ 162 (218)
|+|+.||.|.++.-+...+-. -+.++|+++.+.+..+.+... .+...|+.+... ..++ .+|+++.......
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~-~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~-~~~~--~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFK-CVFASEIDKYAQKTYEANFGN-----KVPFGDITKISP-SDIP--DFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHcCCe-EEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhh-hhCC--CcCEEEecCCCcc
Confidence 589999999999888777632 467799999999998887532 334567665321 1122 5788887554443
Q ss_pred C
Q psy1107 163 I 163 (218)
Q Consensus 163 ~ 163 (218)
+
T Consensus 72 f 72 (315)
T TIGR00675 72 F 72 (315)
T ss_pred c
Confidence 3
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0821|consensus | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.28 Score=37.24 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=48.2
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED 140 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 140 (218)
...-|.+||.|.|..++.+.+.+- .+...++.++..+.-.+-..+..+.+..+++.|+...
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcch-hheeeeeeccccChHHHHHhhcCCcceEEecccccee
Confidence 456889999999999999998764 4788888888887777776665667788888887654
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=91.55 E-value=2.8 Score=28.39 Aligned_cols=101 Identities=17% Similarity=0.280 Sum_probs=60.2
Q ss_pred HHhhhcCCCcEEEEecCCCc-hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCc
Q psy1107 72 EFVNQDVGEGVLLEVGCGVG-NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 72 ~~~~~~~~~~~vLDiGcG~G-~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
+.++......+|+|+|-|.= ..+..+++.+ +.++++|+++. +. +..+.++.-|++++.. .+- ..
T Consensus 6 ~~iAre~~~gkVvEVGiG~~~~VA~~L~e~g--~dv~atDI~~~-------~a---~~g~~~v~DDitnP~~--~iY-~~ 70 (129)
T COG1255 6 EYIARENARGKVVEVGIGFFLDVAKRLAERG--FDVLATDINEK-------TA---PEGLRFVVDDITNPNI--SIY-EG 70 (129)
T ss_pred HHHHHHhcCCcEEEEccchHHHHHHHHHHcC--CcEEEEecccc-------cC---cccceEEEccCCCccH--HHh-hC
Confidence 33444455669999999854 3355555555 68999999876 11 2458889999988543 111 24
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.|+|.+.- ||.+....+-.+.+.+ |.-+++......+
T Consensus 71 A~lIYSiR-----pppEl~~~ildva~aV--ga~l~I~pL~Ge~ 107 (129)
T COG1255 71 ADLIYSIR-----PPPELQSAILDVAKAV--GAPLYIKPLTGEP 107 (129)
T ss_pred ccceeecC-----CCHHHHHHHHHHHHhh--CCCEEEEecCCCC
Confidence 68887632 3334444444455544 3446665544444
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.48 E-value=1.4 Score=34.76 Aligned_cols=100 Identities=17% Similarity=0.106 Sum_probs=57.3
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+||=+|+| .|..+..+++..-...++++|.++...+.++..-.. .++..+-.............+|+++-
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~-----~~i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT-----ALAEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc-----EecCchhhHHHHHHHhCCCCCCEEEE
Confidence 367788888875 455566666553212488899999888888765210 11100000000001112235898874
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
. .. -...+..+.+.|+++|.+++...
T Consensus 194 ~-----~G---~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 194 F-----SG---ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred C-----CC---ChHHHHHHHHHhcCCCEEEEecc
Confidence 2 21 12467778899999999988663
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.47 E-value=2.1 Score=33.55 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=31.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCH
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISP 113 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~ 113 (218)
....++...+|+|+.+|.++.++.+++ ..|+++|--+
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr~--m~V~aVDng~ 243 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKRN--MRVYAVDNGP 243 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhcc--eEEEEeccch
Confidence 445788999999999999999999876 6999999644
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.93 Score=35.55 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=42.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcC-----CccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCccc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWS-----KICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDI 142 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~-----~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~ 142 (218)
..+...++|+|||.|.++..++... +...++.||-.......=. ...... ..+.-+.+|+.+.++
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~-~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN-KIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh-hhhccCCCCceEEEEEEeeccch
Confidence 3566799999999999999998765 4568899996443221111 111111 356666778877654
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >KOG3924|consensus | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.43 Score=39.27 Aligned_cols=110 Identities=13% Similarity=0.145 Sum_probs=70.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC----------CcccCCCceEEeccCCCccccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN----------PLYDASKMNVFPCDVTEDDILN 144 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~----------~~~~~~~i~~~~~d~~~~~~~~ 144 (218)
...++.....|+|+|.|+.....+..+....-+|+++....-..+..+ +...+..+..+++++.......
T Consensus 188 l~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~ 267 (419)
T KOG3924|consen 188 LKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT 267 (419)
T ss_pred hccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence 456788899999999999988887664333556666555444443332 2223456778888887755433
Q ss_pred CCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 145 QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
.+.. ..++|+.+.+. ++|+...+.- ++..-+++|-.++-.
T Consensus 268 eI~~-eatvi~vNN~~--Fdp~L~lr~~-eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 268 EIQT-EATVIFVNNVA--FDPELKLRSK-EILQKCKDGTRIISS 307 (419)
T ss_pred HHhh-cceEEEEeccc--CCHHHHHhhH-HHHhhCCCcceEecc
Confidence 3333 56788876653 3444444444 778888888877654
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.29 Score=38.93 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=36.4
Q ss_pred CceEEeccCCCcccccCCCCCcccEEEechhhcC------C----Cc----chHHHHHHHHHHhccCCeEEEEE
Q psy1107 129 KMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSA------I----HP----NKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 129 ~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~------~----~~----~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+..++++|..+. ...++++++|+|++.-.... . .. +....++..+.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~--l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTE--LKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHH--HHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 445677776652 13456678999988432110 0 00 11246889999999999999874
|
|
| >KOG2918|consensus | Back alignment and domain information |
|---|
Probab=91.35 E-value=4.3 Score=32.60 Aligned_cols=122 Identities=16% Similarity=0.266 Sum_probs=73.7
Q ss_pred HhhhcCCCcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCC--cc--------------------cCC
Q psy1107 73 FVNQDVGEGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNP--LY--------------------DAS 128 (218)
Q Consensus 73 ~~~~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~--~~--------------------~~~ 128 (218)
.+.+.....+|+.+|||.-.....+...+ +...++-+|+++.....+.... .. ..+
T Consensus 81 Fl~~~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~ 160 (335)
T KOG2918|consen 81 FLEQTDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSG 160 (335)
T ss_pred HHHhcCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccC
Confidence 33445677899999999998888887765 5568888898776655552110 00 013
Q ss_pred CceEEeccCCCccccc------CCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 129 KMNVFPCDVTEDDILN------QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 129 ~i~~~~~d~~~~~~~~------~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+.+...+|+.+..... ....+-.-++++-.++.+++|+.-..+++-+.......+.+..-...+.|
T Consensus 161 ~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D 232 (335)
T KOG2918|consen 161 RYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPND 232 (335)
T ss_pred ceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCC
Confidence 4455556665432110 11112234556666888998877777888777766666555544444333
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=91.29 E-value=1.6 Score=34.96 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=54.4
Q ss_pred CCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.++|=+||| .|.++.++++......+.++|.++..++.+... .+ .|..+ . ....+|+|+-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~--------~~--i~~~~-----~-~~~g~Dvvid~ 207 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY--------EV--LDPEK-----D-PRRDYRAIYDA 207 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc--------cc--cChhh-----c-cCCCCCEEEEC
Confidence 45678888886 667777777654322477788888776666432 01 11111 0 12358988843
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.. -...+..+.+.|+++|.+++...
T Consensus 208 -----~G---~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 208 -----SG---DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -----CC---CHHHHHHHHHhhhcCcEEEEEee
Confidence 21 12456778899999999998654
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.84 Score=35.94 Aligned_cols=106 Identities=14% Similarity=0.092 Sum_probs=66.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
-.+..|+-+| ..-..++.++..+-.-++..+|+++..++...+-++..+ .++..+..|+.++- +..+ ..+||+++.
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~pl-pe~~-~~kFDvfiT 227 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPL-PEDL-KRKFDVFIT 227 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccC-hHHH-HhhCCeeec
Confidence 3567899998 333344444443433499999999999999988877777 45888888887721 1112 258998875
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCC---eEEEEEe
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSG---GIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~g---G~li~~~ 189 (218)
. ....+ .....++.+-...||.- |++.+.-
T Consensus 228 D-PpeTi--~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 228 D-PPETI--KALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred C-chhhH--HHHHHHHhccHHHhcCCCccceEeeee
Confidence 2 11111 23445666666677665 6666643
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=90.68 E-value=3.7 Score=33.50 Aligned_cols=97 Identities=9% Similarity=0.070 Sum_probs=58.2
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeC---CHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDI---SPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~---s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
.++.+||=+|+| .|.++.++++.. .+++++++. ++...+.+++.-. .++ +..+.+.........+|+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga------~~v--~~~~~~~~~~~~~~~~d~ 241 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGA------TYV--NSSKTPVAEVKLVGEFDL 241 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCC------EEe--cCCccchhhhhhcCCCCE
Confidence 366788888886 566677776654 348988886 6777787775411 111 111111000001236898
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|+-. .. -...+..+.+.|+++|.+++....
T Consensus 242 vid~-----~g---~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 242 IIEA-----TG---VPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred EEEC-----cC---CHHHHHHHHHHccCCcEEEEEecC
Confidence 8853 21 123677888999999999876543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=90.61 E-value=1.4 Score=39.24 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=63.2
Q ss_pred CcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 80 EGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 80 ~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
..+|+=+||| .|......... .+..++.+|.+++.++.+++. ....+.+|.++.+......-.+.|++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vvv~- 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS-SGVKMTVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLINA- 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHhc------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE-
Confidence 3577777777 34433332222 124899999999999988753 35678899998766544444467877763
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.+.++....+-...+.+.|+-.+++.......
T Consensus 472 ----~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~ 503 (621)
T PRK03562 472 ----IDDPQTSLQLVELVKEHFPHLQIIARARDVDH 503 (621)
T ss_pred ----eCCHHHHHHHHHHHHHhCCCCeEEEEECCHHH
Confidence 22223333333445556787777776644333
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=90.38 E-value=1.8 Score=33.87 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=45.9
Q ss_pred HHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHH
Q psy1107 94 IFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVK 173 (218)
Q Consensus 94 ~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~ 173 (218)
+..+.+.++..+|+++|.++..++.+.+.-. +.-...+. ..+ ..+|+|+.. .|++....+++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~-----~~~~~~~~------~~~--~~~Dlvvla-----vP~~~~~~~l~ 63 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELGI-----IDEASTDI------EAV--EDADLVVLA-----VPVSAIEDVLE 63 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS-----SSEEESHH------HHG--GCCSEEEE------S-HHHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC-----eeeccCCH------hHh--cCCCEEEEc-----CCHHHHHHHHH
Confidence 4556667777899999999999999976511 10000100 011 146888863 45566778888
Q ss_pred HHHHhccCCeEEE
Q psy1107 174 NLFIMLKSGGIIL 186 (218)
Q Consensus 174 ~~~~~Lk~gG~li 186 (218)
++...+++|+.+.
T Consensus 64 ~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 64 EIAPYLKPGAIVT 76 (258)
T ss_dssp HHHCGS-TTSEEE
T ss_pred HhhhhcCCCcEEE
Confidence 8888888887554
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.07 E-value=1.7 Score=36.12 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=35.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~ 122 (218)
....++.+||-|.+ .|..+..++..+|. +|++||+|+..+..+.=+
T Consensus 31 L~i~~~d~vl~ItS-aG~N~L~yL~~~P~-~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 31 LNIGPDDRVLTITS-AGCNALDYLLAGPK-RIHAVDLNPAQNALLELK 76 (380)
T ss_pred hCCCCCCeEEEEcc-CCchHHHHHhcCCc-eEEEEeCCHHHHHHHHHH
Confidence 56678889999954 56666666777774 999999999887766543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=90.02 E-value=1.7 Score=34.96 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=59.9
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc---ccCCCCCccc
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI---LNQVPHNSVD 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~~~~D 152 (218)
..++.+||..|+| .|..+..++... ..++++++.++...+.++..- .. .++.. .+... ........+|
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g----~~-~~~~~--~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELG----AD-EVLNS--LDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhC----CC-EEEcC--CCcCHHHHHHHhcCCCce
Confidence 4566788888876 477777777654 357999999998888876531 11 11111 11000 0112334689
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+++.. . .....+..+.+.|+++|.++....
T Consensus 235 ~vid~-----~---g~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 235 VIFDF-----V---GTQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred EEEEC-----C---CCHHHHHHHHHHhhcCCEEEEECC
Confidence 88742 1 113467788899999999987643
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=89.79 E-value=2.1 Score=37.60 Aligned_cols=97 Identities=12% Similarity=-0.014 Sum_probs=57.7
Q ss_pred cEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
..++=+||| ..+..+++.. .+..++.+|.+++.++.+++. ....+.+|.++........-.+.|.+++.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~~~L~~a~i~~a~~viv~- 488 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER------GIRAVLGNAANEEIMQLAHLDCARWLLLT- 488 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC------CCeEEEcCCCCHHHHHhcCccccCEEEEE-
Confidence 455656665 4555555431 124899999999998888753 47788999998655443333478866542
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+.++....+-.+.+...|...++....
T Consensus 489 ----~~~~~~~~~iv~~~~~~~~~~~iiar~~ 516 (558)
T PRK10669 489 ----IPNGYEAGEIVASAREKRPDIEIIARAH 516 (558)
T ss_pred ----cCChHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 1211222222223344567777777653
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.42 E-value=6.1 Score=33.87 Aligned_cols=58 Identities=16% Similarity=0.199 Sum_probs=42.1
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE 139 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~ 139 (218)
..+++|+.||.|.+..-+...+- -.+.++|+++.+.+.-+.+.... ...+.+..|+.+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~~-p~~~~~~~DI~~ 145 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYCD-PATHRFNEDIRD 145 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCCC-CccceeccChhh
Confidence 56999999999999988877653 36788999999988887774211 233444555554
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=89.37 E-value=2 Score=35.11 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=59.2
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc----ccCCCCC
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI----LNQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~ 149 (218)
...++.+||=.|+| .|..+.++++.. .. +++++|.++...+.++..-. . .++ +..+.+. .......
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga----~-~~i--~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGA----T-HTV--NSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCC----c-eEE--cCCCcCHHHHHHHHhCCC
Confidence 34567888888875 456666676654 24 59999999999888875411 1 111 1111111 0111223
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+|+|+-. .. . ...+..+.+.+++||.+++...
T Consensus 245 g~d~vid~-----~g--~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 245 GADVVIDA-----VG--R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCEEEEC-----CC--C-HHHHHHHHHHhccCCEEEEECC
Confidence 58988742 21 1 2356677889999999987654
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=88.75 E-value=1.1 Score=35.71 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=52.8
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC------CCCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ------VPHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~------~~~~ 149 (218)
.+..||==|.|+| ..+.++++++ +.+...|++........+..+.. ++++...||+.+.+-... -.-+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg--~~~vl~Din~~~~~etv~~~~~~-g~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG--AKLVLWDINKQGNEETVKEIRKI-GEAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC--CeEEEEeccccchHHHHHHHHhc-CceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 4678888888877 4566667766 47888998887665555544333 378999999988642111 1225
Q ss_pred cccEEEechhh
Q psy1107 150 SVDIATLIFVL 160 (218)
Q Consensus 150 ~~D~i~~~~~l 160 (218)
..|+++.+..+
T Consensus 114 ~V~ILVNNAGI 124 (300)
T KOG1201|consen 114 DVDILVNNAGI 124 (300)
T ss_pred CceEEEecccc
Confidence 78888886643
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.36 E-value=6.9 Score=31.67 Aligned_cols=93 Identities=15% Similarity=0.107 Sum_probs=57.8
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+||=.|+| .|..+.++++.. .+++++++.++...+.+++.-. . ++ .+..+ . ....+|++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga---~--~v--i~~~~----~--~~~~~d~~ 227 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGA---A--SA--GGAYD----T--PPEPLDAA 227 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCC---c--ee--ccccc----c--CcccceEE
Confidence 34567899988875 455566666553 3579999999988888876521 1 11 11111 0 11247766
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+.... . ...+....+.|+++|.+++...
T Consensus 228 i~~~~---~-----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 228 ILFAP---A-----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EECCC---c-----HHHHHHHHHhhCCCcEEEEEec
Confidence 53211 1 2367788899999999988664
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=87.94 E-value=3 Score=34.32 Aligned_cols=98 Identities=12% Similarity=0.100 Sum_probs=57.9
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc---cCCCCCcc
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL---NQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~~~~~ 151 (218)
..++.+||=.|+| .|..+..+++.. .+ .++++|.++...+.++..-. ..++ +..+.+.. .....+.+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~Ga-----~~~i--~~~~~~~~~~i~~~~~~g~ 260 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARELGA-----TATV--NAGDPNAVEQVRELTGGGV 260 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHcCC-----ceEe--CCCchhHHHHHHHHhCCCC
Confidence 4566788878876 456666666553 24 69999999999988875411 1111 11111100 01112258
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+|+-. .. ....+..+.+.|+++|.+++...
T Consensus 261 d~vid~-----~G---~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 261 DYAFEM-----AG---SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CEEEEC-----CC---ChHHHHHHHHHHhcCCEEEEEcc
Confidence 988842 11 12456777889999999887653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=87.75 E-value=11 Score=32.59 Aligned_cols=44 Identities=14% Similarity=0.384 Sum_probs=33.7
Q ss_pred CCcEEEEecCCCchhHHHHhhc---C-CccEEEEEeCCHHHHHHHHhC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSW---S-KICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~---~-~~~~v~~~D~s~~~~~~~~~~ 122 (218)
+...+.|+.||+|.+....... + ....++|.+..+.+...+..+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mn 264 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMN 264 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHH
Confidence 4568999999999998765432 1 123689999999998888876
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >KOG1098|consensus | Back alignment and domain information |
|---|
Probab=86.69 E-value=1.1 Score=39.31 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=63.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~~~ 149 (218)
....+...|||+||-+|.|+...++..| ..-|+|+|+-|-. -.+++.-.+.|++...... .+..-
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik----------p~~~c~t~v~dIttd~cr~~l~k~l~t~ 109 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK----------PIPNCDTLVEDITTDECRSKLRKILKTW 109 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc----------cCCccchhhhhhhHHHHHHHHHHHHHhC
Confidence 4456788999999999999977776654 3478999985521 1134444445554432111 11122
Q ss_pred cccEEEechhhcCCCc----------chHHHHHHHHHHhccCCeEEEEEecCCCchhh
Q psy1107 150 SVDIATLIFVLSAIHP----------NKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQ 197 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~----------~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~ 197 (218)
+.|+|+.-+. +.+.. ......++.+...|..||.++--.+...+...
T Consensus 110 ~advVLhDga-pnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ 166 (780)
T KOG1098|consen 110 KADVVLHDGA-PNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNG 166 (780)
T ss_pred CCcEEeecCC-CccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchH
Confidence 4476664221 11110 11224556667888899986665555555543
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.32 E-value=4.9 Score=31.93 Aligned_cols=89 Identities=18% Similarity=0.037 Sum_probs=53.5
Q ss_pred cEEEEecCC--CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCG--VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG--~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.+|+=+|.| -|.++..+...+....+++.|.+....+.+...- +.....+ + . ........|+|+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg------v~d~~~~--~--~-~~~~~~~aD~Viva- 71 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG------VIDELTV--A--G-LAEAAAEADLVIVA- 71 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC------ccccccc--c--h-hhhhcccCCEEEEe-
Confidence 467778877 3445556666677668899999998888877541 1111100 0 0 01112247888874
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEE
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGII 185 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l 185 (218)
.|......+++++...|++|.++
T Consensus 72 ----vPi~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 72 ----VPIEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred ----ccHHHHHHHHHHhcccCCCCCEE
Confidence 34345567778887778888633
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=86.23 E-value=0.94 Score=34.80 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=32.2
Q ss_pred EEeccCCCcccccCCCCCcccEEEechhhc----C-----CC----cchHHHHHHHHHHhccCCeEEEEE
Q psy1107 132 VFPCDVTEDDILNQVPHNSVDIATLIFVLS----A-----IH----PNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 132 ~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~----~-----~~----~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
++++|..+ +...++++++|+|+..-... . +. .+-...++.++.++|||||.+++.
T Consensus 4 l~~gD~le--~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 4 FILGNCID--VMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred EEechHHH--HHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 44455443 12356667778777642211 0 00 012357889999999999988763
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.20 E-value=2.4 Score=34.12 Aligned_cols=99 Identities=12% Similarity=0.102 Sum_probs=64.0
Q ss_pred CCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+|.=+|.| .|..+..++... .+.|+.+|.|...+......+. .+++.......+ +.... .+.|+++..
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~---~rv~~~~st~~~--iee~v--~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG---GRVHTLYSTPSN--IEEAV--KKADLVIGA 238 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC---ceeEEEEcCHHH--HHHHh--hhccEEEEE
Confidence 45677778888 566676776543 4699999999988877766533 345554443322 11111 268998875
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
-.+... ..+.-+.+++.+.+|||+.++=
T Consensus 239 VLIpga--kaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 239 VLIPGA--KAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEecCC--CCceehhHHHHHhcCCCcEEEE
Confidence 433333 3556677888999999996663
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.76 E-value=7.4 Score=32.84 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=81.9
Q ss_pred cCCCcEEEEecC-CCc------hhHHHHhhcCCccEEEEEe-CCHHHHHHHHhCCcccCCCceEEeccCCCccc------
Q psy1107 77 DVGEGVLLEVGC-GVG------NFIFPLLSWSKICYIHACD-ISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI------ 142 (218)
Q Consensus 77 ~~~~~~vLDiGc-G~G------~~~~~~~~~~~~~~v~~~D-~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------ 142 (218)
..++..|+=+|- |+| -++..+.+.+...-+++.| +.|.+++.++...... ++.|+..+-.....
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~--~v~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQV--GVPFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHc--CCceecCCCCCCHHHHHHHH
Confidence 345678888876 665 3344444445445677788 4567788887764432 45555442222111
Q ss_pred ccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh---hhccCCCCccCccceeccCC
Q psy1107 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA---QMRFKPGHKISENLYMRQDK 216 (218)
Q Consensus 143 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 216 (218)
...+....+|+|++--.-.+--++..-.-+..+...++|.=.|++.|-...... -..|.....++...--|-||
T Consensus 175 l~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 175 LEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred HHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEcccC
Confidence 112334578999986654443345566677888999999999999884433322 13345555566555555555
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.74 E-value=1.2 Score=31.65 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=24.1
Q ss_pred EecCCCc--hhHHHHh--hcCCccEEEEEeCCHHHHHHHHhC
Q psy1107 85 EVGCGVG--NFIFPLL--SWSKICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 85 DiGcG~G--~~~~~~~--~~~~~~~v~~~D~s~~~~~~~~~~ 122 (218)
|||++.| .....++ ...+..+++++|+++...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5544443 346777999999999988877766
|
; PDB: 2PY6_A. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=85.44 E-value=3.4 Score=35.79 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=60.7
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc-------------ccc
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED-------------DIL 143 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------------~~~ 143 (218)
.++.+++=+|+| .|..+..++... .+.++++|.++..++.++..- ..++..|..+. +..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~lG------a~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSMG------AEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC------CeEEeccccccccccccceeecCHHHH
Confidence 357899999998 455555555542 357999999999988887641 12222222110 000
Q ss_pred ----cCCC--CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 144 ----NQVP--HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 144 ----~~~~--~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
..++ -..+|+|+....+..-+ .+.-+.+++.+.+|||+.++=
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~--aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKP--APKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCC--CCeeehHHHHhhCCCCCEEEE
Confidence 0011 23689998765443332 223466778899999997664
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.42 E-value=7.7 Score=31.51 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=56.2
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC-cccccCCCCCccc-
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE-DDILNQVPHNSVD- 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~~~~D- 152 (218)
..++.+||=.|+| .|..+..+++.. .. .+++++.++...+.++..-. ..++..+-.. ..+........+|
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~Ga-----~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSLGA-----MQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCC-----ceEecCcccCHHHHHHHhcCCCCCe
Confidence 3467788888875 455666666553 24 47889999988888764311 1111111000 0011112223567
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|+- ... -...+..+.+.|++||.+++...
T Consensus 232 ~v~d-----~~G---~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 232 LILE-----TAG---VPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred EEEE-----CCC---CHHHHHHHHHHhhcCCEEEEEcc
Confidence 5553 221 12467778899999999998753
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=84.58 E-value=5.5 Score=30.56 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=58.2
Q ss_pred CCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc---CCCCCcccE
Q psy1107 78 VGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN---QVPHNSVDI 153 (218)
Q Consensus 78 ~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~~~~~D~ 153 (218)
.++.+||-.|+|. |..+..++... ..++++++.++...+.++.... ..++ +........ ......+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~-----~~~~--~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGA-----DHVI--DYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCC-----ceec--cCCcCCHHHHHHHhcCCCCCE
Confidence 5678999999985 66666666553 2689999999888777754311 0111 111110000 112346899
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++.. .. . ...+..+.+.|+++|.++...
T Consensus 205 vi~~-----~~--~-~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDA-----VG--G-PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEC-----CC--C-HHHHHHHHHhcccCCEEEEEc
Confidence 8853 21 1 135666778899999988755
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=83.64 E-value=5.9 Score=31.98 Aligned_cols=98 Identities=18% Similarity=0.132 Sum_probs=56.8
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccE-EEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc---ccccCCCCCcc
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICY-IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED---DILNQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~-v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~~~~~ 151 (218)
..++.+||=.|+| .|..+.++++.. .++ +++++.++...+.+++.-. ..++ +..+. .+........+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~ga-----~~~i--~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKALGA-----DFVI--NSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCC-----CEEE--cCCcchHHHHHHHhCCCCC
Confidence 3557788888875 455566666553 245 9999999988888865411 1111 11110 01011122368
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+|+.. .. -...+..+.+.|+++|.+++...
T Consensus 233 d~vid~-----~g---~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 233 DVAIEC-----SG---NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CEEEEC-----CC---CHHHHHHHHHHhhcCCEEEEEcC
Confidence 988842 11 12345667789999999987553
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=83.43 E-value=11 Score=31.23 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=58.0
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc---ccCCCCCcc
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI---LNQVPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~~~~ 151 (218)
...++.+||=+|+| .|..+..+++..-..+++++|.++..++.+++.-. . .++...-.+.++ ......+.+
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga----~-~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI----T-DFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC----c-EEEecccccchHHHHHHHHhCCCC
Confidence 34567889988886 45556666655322269999999999998876411 1 122111000000 011112258
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEec
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDY 190 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~ 190 (218)
|+|+-. .. -...+..+...++++ |.+++...
T Consensus 270 dvvid~-----~G---~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 270 DYSFEC-----AG---NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CEEEEC-----CC---ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 988742 21 124566777788886 88877554
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.89 E-value=6.4 Score=32.01 Aligned_cols=77 Identities=8% Similarity=0.021 Sum_probs=45.7
Q ss_pred CcEEEEecCCCchhHHHH----hhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC------CCC
Q psy1107 80 EGVLLEVGCGVGNFIFPL----LSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV------PHN 149 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~----~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~------~~~ 149 (218)
+.++|=.|++.| ++..+ ++.+ .+++.++-++..++.........+.++.++.+|+.+..-.... .-+
T Consensus 8 ~k~vlITGas~g-IG~~la~~la~~G--~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 8 RQVVVITGASAG-VGRATARAFARRG--AKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 457777776544 33333 3444 5888888887766655443333345788889999875321110 014
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
.+|+++.+..
T Consensus 85 ~iD~lInnAg 94 (334)
T PRK07109 85 PIDTWVNNAM 94 (334)
T ss_pred CCCEEEECCC
Confidence 6898887553
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.26 E-value=6.7 Score=32.74 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=45.4
Q ss_pred cEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 81 GVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 81 ~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.+||=|||| .|......+......+|+..|-+....+.+..... .++....+|+.+.+-....-. .+|+|+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---~~v~~~~vD~~d~~al~~li~-~~d~VIn 74 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---GKVEALQVDAADVDALVALIK-DFDLVIN 74 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---ccceeEEecccChHHHHHHHh-cCCEEEE
Confidence 478999996 44443333223333699999999888777765532 378899999887522111111 3588875
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.18 E-value=13 Score=29.55 Aligned_cols=79 Identities=11% Similarity=0.118 Sum_probs=44.5
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C--CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~~~ 149 (218)
++.++|-.|++.| ..+..+++.+ .+++.++-++..++........ +..+..+.+|+.+..-... . .-+
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARG--AKLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4567887776544 2233333334 5888888888766655443221 2345666788887531110 0 114
Q ss_pred cccEEEechhh
Q psy1107 150 SVDIATLIFVL 160 (218)
Q Consensus 150 ~~D~i~~~~~l 160 (218)
.+|+++.+..+
T Consensus 85 ~id~vI~nAG~ 95 (296)
T PRK05872 85 GIDVVVANAGI 95 (296)
T ss_pred CCCEEEECCCc
Confidence 68999886543
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=81.65 E-value=9.2 Score=31.66 Aligned_cols=100 Identities=13% Similarity=0.149 Sum_probs=56.7
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC--ccc---ccCCCCC
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE--DDI---LNQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~---~~~~~~~ 149 (218)
...++.+||-.|+| .|..+.++++..-...++++|.++...+.++..-. . .++ +..+ ... ......+
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa----~-~~i--~~~~~~~~~~~~v~~~~~~ 262 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV----T-DFI--NPNDLSEPIQQVIKRMTGG 262 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC----c-EEE--cccccchHHHHHHHHHhCC
Confidence 34567889888875 45555666654322258889988988888865411 1 111 1111 000 0111122
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~ 190 (218)
.+|+|+-. .. ....+..+.+.+++| |.+++...
T Consensus 263 g~d~vid~-----~G---~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 263 GADYSFEC-----VG---DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CCCEEEEC-----CC---ChHHHHHHHHhhccCCCEEEEECC
Confidence 58888742 21 123566778889998 99887543
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=80.97 E-value=7.2 Score=32.55 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=58.6
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEec---cCCCcccccCCCCCccc
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPC---DVTEDDILNQVPHNSVD 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~~~~~~~~D 152 (218)
..++.+||=.|+| .|..+..+++..-...++++|.++..++.+++.-. . .+... ++.. .+........+|
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga----~-~v~~~~~~~~~~-~v~~~~~~~g~D 256 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC----E-TVDLSKDATLPE-QIEQILGEPEVD 256 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC----e-EEecCCcccHHH-HHHHHcCCCCCc
Confidence 4556677667775 55556666654322246677888888888876411 1 11111 1100 011112223589
Q ss_pred EEEechhhcC------CCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 153 IATLIFVLSA------IHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 153 ~i~~~~~l~~------~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+++-...... .........+..+.+++++||.+++....
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 8875321100 00011124788889999999999986653
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.74 E-value=8.5 Score=30.53 Aligned_cols=79 Identities=18% Similarity=0.113 Sum_probs=41.1
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHH-HHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----C
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPR-AVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----H 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~-~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~ 148 (218)
++.++|-.|++.| ..+..+++.+ .+++.++.+.. ..+.........+.++.++.+|+.+...... +. -
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G--~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEG--ADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567888876544 2333344444 47777766532 2222222222223567888999887532111 10 1
Q ss_pred CcccEEEechh
Q psy1107 149 NSVDIATLIFV 159 (218)
Q Consensus 149 ~~~D~i~~~~~ 159 (218)
+..|+++....
T Consensus 123 ~~iD~lI~~Ag 133 (290)
T PRK06701 123 GRLDILVNNAA 133 (290)
T ss_pred CCCCEEEECCc
Confidence 35788876543
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.68 E-value=9.5 Score=34.42 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=44.6
Q ss_pred CcEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----CCCcc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----PHNSV 151 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~~~~~ 151 (218)
+.++|=.|++ |..+..++.. ....+|+++|.++...+.+....... .++.++.+|+.+..-... + ..+.+
T Consensus 422 gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i 499 (681)
T PRK08324 422 GKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAFGGV 499 (681)
T ss_pred CCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4677877754 3333333322 11258999999887766554432211 367888899887532111 1 11368
Q ss_pred cEEEechh
Q psy1107 152 DIATLIFV 159 (218)
Q Consensus 152 D~i~~~~~ 159 (218)
|+|+....
T Consensus 500 DvvI~~AG 507 (681)
T PRK08324 500 DIVVSNAG 507 (681)
T ss_pred CEEEECCC
Confidence 98887553
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.64 E-value=15 Score=27.81 Aligned_cols=109 Identities=10% Similarity=0.047 Sum_probs=56.5
Q ss_pred CCcEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----CCCc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----PHNS 150 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~~~~ 150 (218)
++.+||-.|++. ..+..+++. ....+|++++-++.....+....... .+++++.+|+.+..-... + .-+.
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-GNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 356888888753 333333322 12358999988877655443221111 357888999887532110 0 0134
Q ss_pred ccEEEechhhcCCC-cch--------------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 151 VDIATLIFVLSAIH-PNK--------------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 151 ~D~i~~~~~l~~~~-~~~--------------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|.++......... ..+ ...+++.+...++++|.+++..
T Consensus 82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 67777644321111 011 1123455556667788777655
|
|
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=80.39 E-value=2.4 Score=30.14 Aligned_cols=54 Identities=22% Similarity=0.181 Sum_probs=30.8
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE 139 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~ 139 (218)
..-|||+|-|+|..=..+.+..|+.+|+++|-.-. ....-.+..-.++.+|+.+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~------~hp~~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALA------CHPSSTPPEEDLILGDIRE 82 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--------S-GGG---GGGEEES-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecc------cCCCCCCchHheeeccHHH
Confidence 47899999999999989999999999999995221 1111123456677777755
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 9e-13
Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 11/141 (7%)
Query: 47 YWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYI 106
+ +Y E KF R ++ G +L++GCG G F+ +
Sbjct: 9 HTSDYYFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCK--EEGIES 66
Query: 107 HACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPN 166
DI+ + F + K NV D E L +P +D + + + P
Sbjct: 67 IGVDINEDMIKFCE-------GKFNVVKSDAIEY--LKSLPDKYLDGVMISHFVEHLDPE 117
Query: 167 KFSTVVKNLFIMLKSGGIILF 187
+ ++ + +K I+
Sbjct: 118 RLFELLSLCYSKMKYSSYIVI 138
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Length = 289 | Back alignment and structure |
|---|
Score = 62.1 bits (150), Expect = 9e-12
Identities = 29/186 (15%), Positives = 49/186 (26%), Gaps = 42/186 (22%)
Query: 45 KKYWDLFYKRNETKFFKDR---NWTVNEFHE-FVNQDVGEGVLLEVGCGVGNFIFPLLSW 100
+ Y Y W + + F +V L+++G G ++ LLS
Sbjct: 33 RAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPT--VYQLLSA 90
Query: 101 SKICY-IHACDISPRAVNFFKL-----NPLYDASKM------------------------ 130
I D ++ S
Sbjct: 91 CSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150
Query: 131 --NVFPCDVTEDDIL--NQVPHNSVDIATLIFVLSAIHPNK--FSTVVKNLFIMLKSGGI 184
V P DV + L D F L A+ P+ F + ++ +L+ GG
Sbjct: 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGH 210
Query: 185 ILFRDY 190
+L
Sbjct: 211 LLLIGA 216
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Length = 200 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 4e-10
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 61 KDRNWTVNEFHEFVNQDVGEGV-LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFF 119
+R T+N+F+ +V ++ +L+ GCG + ++ HA DI + F
Sbjct: 30 NERVATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAF- 88
Query: 120 KLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIH 164
L + + V + D+ L+ +L +
Sbjct: 89 ----LSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPVLK 129
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 4e-10
Identities = 23/172 (13%), Positives = 53/172 (30%), Gaps = 15/172 (8%)
Query: 33 SKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGN 92
+ ++ Y+ + F + E + G +LE+ G G
Sbjct: 5 HGLIESQLS-----YYRARASEYDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGY 59
Query: 93 FIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVD 152
+ L + A D S + A + + + + D+ + P D
Sbjct: 60 WTRHLSG--LADRVTALDGSAEMIAE--------AGRHGLDNVEFRQQDLFDWTPDRQWD 109
Query: 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGH 204
L+ + ++F +++ + GG++ F D H+ +
Sbjct: 110 AVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSE 161
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 5e-10
Identities = 22/151 (14%), Positives = 53/151 (35%), Gaps = 10/151 (6%)
Query: 67 VNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD 126
+ F ++ N+ + +L+ G G + + +IS + +
Sbjct: 11 LYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDG-YKTYGIEISDLQLKKAENF---- 65
Query: 127 ASKMNVFPCDVTEDDILN-QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGII 185
+ + N ++++ DI S+ + + N + + +LK GG+
Sbjct: 66 SRENNF-KLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLA 124
Query: 186 LFRDYGLHDMAQMRFKPGHKISENLYMRQDK 216
D R+ G KI E +++ ++
Sbjct: 125 CINFLTTKD---ERYNKGEKIGEGEFLQLER 152
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 Length = 263 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 1e-09
Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 39/180 (21%)
Query: 45 KKYWDLFYKRNETKFFKDR--NWTVNEFHE-FVNQDVGEGVLLEVGCGVGNFIFPLLSWS 101
+ Y +Y + + + + + H+ F + L+++G G I+ +L+
Sbjct: 18 RDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPT--IYQVLAAC 75
Query: 102 KIC-YIHACDISPRAVNF-----------FKLNPLYD--------------------ASK 129
I D + R + P A+
Sbjct: 76 DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAV 135
Query: 130 MNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNK--FSTVVKNLFIMLKSGGIILF 187
V CDV + L D + + + + + NL +LK GG ++
Sbjct: 136 KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVT 195
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* Length = 265 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 3e-09
Identities = 34/183 (18%), Positives = 60/183 (32%), Gaps = 39/183 (21%)
Query: 45 KKYWDLFYKRNETKFFKD--RNWTVNEFHE-FVNQDVGEGVLLEVGCGVGNFIFPLLSWS 101
+ Y + +Y ++ + + F V +L+++G G I+ LLS
Sbjct: 19 RDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPT--IYQLLSAC 76
Query: 102 KIC-YIHACDISPRAVNFFK--LNPLYDA-----------------------------SK 129
+ I D + + + + L A +
Sbjct: 77 ESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAI 136
Query: 130 MNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNK--FSTVVKNLFIMLKSGGIILF 187
V CDVT+ L V D L A P+ + T ++NL +LK GG ++
Sbjct: 137 KQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVM 196
Query: 188 RDY 190
D
Sbjct: 197 VDA 199
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 5e-09
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKL------NPLYDASKMNVFPCD 136
++++GCG GN + LL I D+S + K P ++++F
Sbjct: 33 VIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS 92
Query: 137 VTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186
+ D + D AT+I V+ + N+ K LF + +I+
Sbjct: 93 LVYRDK----RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Length = 281 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 7e-09
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 61 KDRNWTVNEFHEFVNQDVGE-GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFF 119
++R ++EF+ + + + L ++ CG+ P + A DI R V F
Sbjct: 113 RERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGF- 171
Query: 120 KLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHP 165
++ + P D+L D + +L +
Sbjct: 172 -VDEALTRLNV---PHRTNVADLLEDRLDEPAD---VTLLLKTLPC 210
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 5e-08
Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 16/156 (10%)
Query: 46 KYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICY 105
+D F + + ++ + + + VN+ G +LE G G GN LL
Sbjct: 14 HTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGN--VLEFGVGTGNLTNKLLL--AGRT 69
Query: 106 IHACDISPRAVNFFKLNPLYDASKMNVFPCDVT--EDDILNQVPHNSVDIATLIFVLSAI 163
++ + S K P + + E D L+ S+D + +
Sbjct: 70 VYGIEPSREMRMIAKEK----------LPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHL 119
Query: 164 HPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMR 199
++ + + +L GG I+F D D
Sbjct: 120 TDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYD 155
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 5e-08
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 12/138 (8%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+LE GCG+G L + I + DISP ++ + N K + + +I
Sbjct: 41 VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAREN----TEKNGIKNVKFLQANI 96
Query: 143 LN-QVPHNSVDIATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRF 200
+ +S D + FVL H + +K+L +LK GG I + D F
Sbjct: 97 FSLPFEDSSFDHIFVCFVL--EHLQSP-EEALKSLKKVLKPGGTITVIEG---DHGSCYF 150
Query: 201 KPGHKISENLYMRQDKTR 218
P K + + + +
Sbjct: 151 HPEGKKAIEAWNCLIRVQ 168
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Length = 253 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-07
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 61 KDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFK 120
K+R ++ ++F+ +L++ CG+ I + CDI +
Sbjct: 87 KERLAELDTLYDFIFSAETPRRVLDIACGLNPLALY---ERGIASVWGCDIHQGLGDV-- 141
Query: 121 LNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVL 160
+ P D+L P + D+A + +L
Sbjct: 142 ITPFAREKDW---DFTFALQDVLCAPPAEAGDLALIFKLL 178
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-07
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 6/117 (5%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+L++G G G L+ D+S + + K E D
Sbjct: 48 ILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNR------FRGNLKVKYIEADY 101
Query: 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMR 199
D+ + + + K + +LK GI + D + A +
Sbjct: 102 SKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIE 158
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-07
Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 18/135 (13%)
Query: 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED 140
GV+++ GCG G + LL ++ Y DI+ A+ K D
Sbjct: 19 GVIVDYGCGNGFYCKYLLEFATKLY--CIDINVIAL---------KEVKEKFDSVITLSD 67
Query: 141 DILNQVPHNSVDIATLIFVLSAI-HPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMR 199
++P NSVD + + + +LK G ++ D+ +
Sbjct: 68 PK--EIPDNSVDFILFANSFHDMDDKQHV---ISEVKRILKDDGRVIIIDWRKENTGIGP 122
Query: 200 FKPGHKISENLYMRQ 214
++ E YM
Sbjct: 123 -PLSIRMDEKDYMGW 136
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 4e-07
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF------FKLNPLYDASKMNVFPCD 136
++++GCG GN + LL S I D+S R++ P ++ +
Sbjct: 33 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA 92
Query: 137 VTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186
+T D + D AT+I V+ + ++ + LF + +I+
Sbjct: 93 LTYQDK----RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIV 138
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-06
Identities = 25/184 (13%), Positives = 55/184 (29%), Gaps = 20/184 (10%)
Query: 24 LERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVN------QD 77
+E+ ++ ++ + N W+ ++ + W N V
Sbjct: 2 MEKLSA-------IKKPDINVADAWEQYWNK-TLVNSTPVLWDANVERAVVVDLPRFELL 53
Query: 78 VGEGV-LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCD 136
+ L++ CG G L + D+S A+ A+ ++ D
Sbjct: 54 FNPELPLIDFACGNGTQTKFLS--QFFPRVIGLDVSKSALEIAAKE--NTAANISYRLLD 109
Query: 137 VTEDDILNQVPHNSVDIATLI-FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195
+ Q+ D + I K + ++L I+L G + + G +
Sbjct: 110 GLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCI 169
Query: 196 AQMR 199
Sbjct: 170 DFFN 173
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-06
Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 12/144 (8%)
Query: 46 KYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICY 105
+Y+D Y+R + + ++ F E ++V +L++ CG G L + Y
Sbjct: 10 EYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRR--VLDLACGTGIPTLELA---ERGY 64
Query: 106 -IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF-VLSAI 163
+ D+ + + A + N+ + + D+L N D T+ F +
Sbjct: 65 EVVGLDLHEEMLRVARRK----AKERNL-KIEFLQGDVLEIAFKNEFDAVTMFFSTIMYF 119
Query: 164 HPNKFSTVVKNLFIMLKSGGIILF 187
+ + LK GG+ +
Sbjct: 120 DEEDLRKLFSKVAEALKPGGVFIT 143
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-06
Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 12/154 (7%)
Query: 45 KKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGV-LLEVGCGVGNFIFPLLSWSKI 103
K+Y+ +F + + R+ + + + + + +L++ CGVG F F L
Sbjct: 4 KEYYRVFPTYTDINSQEYRSR-IETLEPLLMKYMKKRGKVLDLACGVGGFSFLL---EDY 59
Query: 104 CY-IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN-QVPHNSVDIATLIFVLS 161
+ + DIS + + A + D + D I +
Sbjct: 60 GFEVVGVDISEDMIRKAREY----AKSRES-NVEFIVGDARKLSFEDKTFDYVIFIDSIV 114
Query: 162 AIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195
P + + V K + +LK G + L ++
Sbjct: 115 HFEPLELNQVFKEVRRVLKPSGKFIMYFTDLREL 148
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 2e-06
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 83 LLEVGCGVGNFIFPLLS-WSKICYIHACDISPRAVNFFK--LNPLYDASKMNVFPCDVTE 139
L++ GCG G+ + LL + + I DISP+ + L+ + NV + +
Sbjct: 725 LVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD 784
Query: 140 DDILNQVPH-NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186
IL + VDI T + V+ + ++ + + + +I+
Sbjct: 785 GSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-06
Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 23/166 (13%)
Query: 38 EEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPL 97
+ ++ F E F R ++E + V + EG +E+G G G F PL
Sbjct: 7 HHHHHHMWHIFERFVNEYERWFLVHRFAYLSEL-QAVKCLLPEGRGVEIGVGTGRFAVPL 65
Query: 98 LSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN-QVPHNSVDIATL 156
+ S R A K V V + N + S D A +
Sbjct: 66 KI------KIGVEPSERMAEI--------ARKRGV---FVLKGTAENLPLKDESFDFALM 108
Query: 157 IFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFK 201
+ + + P + +K + +LK GG ++ ++
Sbjct: 109 VTTICFVDDPER---ALKEAYRILKKGGYLIVGIVDRESFLGREYE 151
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 3e-06
Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 20/162 (12%)
Query: 44 KKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGV-LLEVGCGVGNFIFPLLSWSK 102
+ +YWD Y+ D + F + ++ +L +GCG + L
Sbjct: 6 EVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFL-GG 64
Query: 103 ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSA 162
+ + D S V + ++ DV + D P S D+ L A
Sbjct: 65 FPNVTSVDYSSVVVAAMQAC-YAHVPQLRWETMDVRKLDF----PSASFDVVLEKGTLDA 119
Query: 163 IHPNKFST-------------VVKNLFIMLKSGGIILFRDYG 191
+ + V+ + +L GG +
Sbjct: 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 5e-06
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE 139
EG ++++GCG G LL + + D SP AV +LN + + C+
Sbjct: 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLN-VETNMPEALDRCEFMI 281
Query: 140 DDILNQVPHNSVD 152
++ L+ V +
Sbjct: 282 NNALSGVEPFRFN 294
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 6e-06
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 13/137 (9%)
Query: 51 FYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACD 110
FY+ N T + +R +F+ + +LE+GCG G +L+ + A D
Sbjct: 16 FYRGNATAYA-ERQPRSATLTKFLGELPAGAKILELGCGAGYQAEAMLA--AGFDVDATD 72
Query: 111 ISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFST 170
SP V ++ D L + ++ +
Sbjct: 73 GSPELAAEASRRL----------GRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDELAD 122
Query: 171 VVKNLFIMLKSGGIILF 187
V+K ++ LK GG+
Sbjct: 123 VLKLIWRALKPGGLFYA 139
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 6e-06
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 10/114 (8%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFF-KLNPLYDASKMNVFPCDVTEDD 141
+L++G G+G + + H DI VN + + +D
Sbjct: 59 VLDIGSGLGGGCMYINEKYG-AHTHGIDICSNIVNMANERVSGNN-------KIIFEAND 110
Query: 142 ILN-QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194
IL + P N+ D+ + A+ + + + + LK G +L DY +
Sbjct: 111 ILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE 164
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 6e-06
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 9/119 (7%)
Query: 81 GVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFK-LNPLYDASKMNVF----P 134
+L++VGCG G + I D+S + + + + NV
Sbjct: 38 KLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISS 97
Query: 135 CDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193
D + + V +D +I + H F ++ + L+ G I Y
Sbjct: 98 SDDFKFLGADSVDKQKID---MITAVECAHWFDFEKFQRSAYANLRKDGTIAIWGYADP 153
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 6e-06
Identities = 27/172 (15%), Positives = 60/172 (34%), Gaps = 23/172 (13%)
Query: 48 WDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLS--WSKICY 105
WD + ++E + + N + + Q G +L + G G L S +
Sbjct: 2 WDERFSQSEYVYGTEPNDFLVSVANQIPQ----GKILCLAEGEGRNACFLASLGYE---- 53
Query: 106 IHACDISPRAVNFFKLNPLYDASKMNV--FPCDVTEDDILNQVPHNSVDIATLIFVLSAI 163
+ A D S + K L + + ++ + DI ++ + IF +
Sbjct: 54 VTAVDQSSVGLA--KAKQLAQEKGVKITTVQSNLADFDI----VADAWEGIVSIFC--HL 105
Query: 164 HPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQD 215
+ + ++ LK GG+ + Q+++ G +L + +
Sbjct: 106 PSSLRQQLYPKVYQGLKPGGVFI---LEGFAPEQLQYNTGGPKDLDLLPKLE 154
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-05
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 31/171 (18%)
Query: 40 IEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGV-----------LLEVGC 88
+ + KY + F + F + + EF+++ + + +L +G
Sbjct: 8 LFSDHGKYVESF------RRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGG 61
Query: 89 GVGNFIFPLLS------WSKICYIHACDISPRAVNFFK----LNPLYDASKMNVFPCDVT 138
G G +LS + S + +K + K +
Sbjct: 62 GAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSS 121
Query: 139 E--DDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
E +L + D +I +L + +K +L + +L
Sbjct: 122 EYQSRMLEKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLI 170
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-05
Identities = 24/189 (12%), Positives = 65/189 (34%), Gaps = 11/189 (5%)
Query: 9 NSVVAPILTDDLNKNLERQNSRLVSKHVAEEI-EQNKKKYWDLFYKRNETKFFKDRNW-- 65
N + I + + S + I +Q K N + F +
Sbjct: 97 NRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGE 156
Query: 66 -TVNEFHEFVNQ-DVGEG-VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122
+ + + +++ + + + +++G GVG + + + + + + + + + +
Sbjct: 157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETM 216
Query: 123 PLYDASKMNVF-----PCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFI 177
M + + D L++ + ++IFV + + +K F
Sbjct: 217 DREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFA 276
Query: 178 MLKSGGIIL 186
+K GG I+
Sbjct: 277 NMKEGGRIV 285
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-05
Identities = 23/149 (15%), Positives = 38/149 (25%), Gaps = 14/149 (9%)
Query: 40 IEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLS 99
I +N + + D + G LLE+G G+F L
Sbjct: 4 ISRNYDQEIKDTAGHK-YAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQ- 61
Query: 100 WSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159
I + S A++ A + D L V
Sbjct: 62 -EHFNDITCVEASEEAISH--------AQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHV 112
Query: 160 LSAIH-PNKFSTVVKNLFIMLKSGGIILF 187
L H + + + + L GG +
Sbjct: 113 LE--HIDDPVALLKRINDDWLAEGGRLFL 139
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-05
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 14/142 (9%)
Query: 77 DVGEG-VLLEVGCGVGNFIFPLLSWSKIC----YIHACDISPRAVNFFKLNPLYDASKMN 131
+ EG +L+VG G G ++ L SK+ ++A D+ VN+ + N
Sbjct: 34 GLKEGMTVLDVGTGAGFYLPYL---SKMVGEKGKVYAIDVQEEMVNYAWEK-VNKLGLKN 89
Query: 132 VFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191
V E+ I +P N+VD + F + ++ L + K + D+
Sbjct: 90 VEVLKSEENKI--PLPDNTVDFIFMAFTFHEL-SEP-LKFLEELKRVAKPFAYLAIIDWK 145
Query: 192 LHDMAQMRFKPGHKISENLYMR 213
+ + P SE
Sbjct: 146 KEERDKGP-PPEEVYSEWEVGL 166
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-05
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 17/109 (15%)
Query: 84 LEVGCGVGNFIFPLLSWSKICY-IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
LE+GC G F L + C + D+ PRA+ ++ DI
Sbjct: 56 LEIGCAAGAFTEKL---APHCKRLTVIDVMPRAIGRACQRT---KRWSHI---SWAATDI 106
Query: 143 LNQVPHNSVDIATLIFVLSAIH----PNKFSTVVKNLFIMLKSGGIILF 187
L D LI V ++ + T + N+ ML GG ++F
Sbjct: 107 LQFSTAELFD---LIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 5e-05
Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 14/135 (10%)
Query: 71 HEFVNQDVGEG-VLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDAS 128
H+++ V EG +++ CG GN L S + + DI +A+
Sbjct: 13 HDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL 72
Query: 129 KMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAI---------HPNKFSTVVKNLFIML 179
V + +D N + + ++F L + P + +L
Sbjct: 73 IDRV---TLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELL 129
Query: 180 KSGGIILFRDYGLHD 194
+GGII Y D
Sbjct: 130 VTGGIITVVIYYGGD 144
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 5e-05
Identities = 29/142 (20%), Positives = 46/142 (32%), Gaps = 9/142 (6%)
Query: 51 FYKRNETKFFKDRNWTV--NEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHA 108
R+E F T +E E V + V G L++GCG G L + + A
Sbjct: 3 MVIRDENYFTDKYELTRTHSEVLEAV-KVVKPGKTLDLGCGNGRNSLYLAA--NGYDVDA 59
Query: 109 CDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKF 168
D + ++ + S N+ D+ N D VL +
Sbjct: 60 WDKNAMSIANVERI----KSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTI 115
Query: 169 STVVKNLFIMLKSGGIILFRDY 190
++ N+ K GG L
Sbjct: 116 PGLIANMQRCTKPGGYNLIVAA 137
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 1e-04
Identities = 28/174 (16%), Positives = 61/174 (35%), Gaps = 15/174 (8%)
Query: 39 EIEQNK---KKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIF 95
+++NK K +++ + + +K +E + + D + +L++GCG G
Sbjct: 2 SLKENKYDDKHFFEQYSQMPRSKEGLKAAGEWHELKKML-PDFNQKTVLDLGCGFGWHCI 60
Query: 96 PLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155
+ + D+S R + K + ED + ++ ++
Sbjct: 61 -YAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVC---YEQKAIEDIAI---EPDAYNVVL 113
Query: 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISEN 209
L + F + K ++I LKS G +F H + + E
Sbjct: 114 SSLALH--YIASFDDICKKVYINLKSSGSFIFSV--EHPVFTADGRQDWYTDET 163
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 1e-04
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 10/108 (9%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+ +G G LLS ++ +I P + + V +V D
Sbjct: 126 AVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKV----IEGLGVDGVNVITGDE 181
Query: 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190
+ D+ ++ A V +N+ + + I++R Y
Sbjct: 182 TV-IDGLEFDV-----LMVAALAEPKRRVFRNIHRYVDTETRIIYRTY 223
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 1e-04
Identities = 21/153 (13%), Positives = 53/153 (34%), Gaps = 19/153 (12%)
Query: 46 KYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICY 105
+ W L+ ++ + + W + + V L+V CG G L+ + +
Sbjct: 29 RVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRV-----LDVACGTGVDSIMLV---EEGF 80
Query: 106 -IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPHNSVDIATLIF-- 158
+ + D S + + + + + E + L + + D +
Sbjct: 81 SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNS 140
Query: 159 ----VLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
S ++ +KN+ M++ GG+++
Sbjct: 141 FAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 2e-04
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 25 ERQNSRLVSKHVAE-----EIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHE--FVNQ 76
E Q RL A E + KK + + +R + ++N N + F Q
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ--VEKNKINNRIADKAFYQQ 148
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 2e-04
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+L +G G + + ++A + +PR + +L A + N+ P + D
Sbjct: 78 ILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMR--ELLDAC-AERENIIP--ILGDAN 132
Query: 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186
Q N V+ +I+ A PN+ ++KN LK GG +
Sbjct: 133 KPQEYANIVEKVDVIYEDVA-QPNQAEILIKNAKWFLKKGGYGM 175
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 2e-04
Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 14/133 (10%)
Query: 71 HEFVNQDVGEG-VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASK 129
H+F+ + + + ++++ G GN L SK ++A D+ +A+ L D
Sbjct: 13 HDFLAEVLDDESIVVDATMGNGNDTAFLAGLSK--KVYAFDVQEQALGKTSQR-LSDLGI 69
Query: 130 MNV-FPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFST-------VVKNLFIMLKS 181
N D E+ L+ + A T ++ + L+
Sbjct: 70 ENTELILDGHEN--LDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEV 127
Query: 182 GGIILFRDYGLHD 194
GG + Y HD
Sbjct: 128 GGRLAIMIYYGHD 140
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 3e-04
Identities = 21/174 (12%), Positives = 53/174 (30%), Gaps = 12/174 (6%)
Query: 23 NLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV-----NQD 77
+ E ++ +++++ +R + + + + F+
Sbjct: 2 DSSSPLKTFRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLY 61
Query: 78 VGEG-VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCD 136
G +L++GCG G + + I + DI+ ++N + K
Sbjct: 62 TKRGDSVLDLGCGKGGDLLKYER-AGIGEYYGVDIAEVSINDAR--VRARNMKRRFKVFF 118
Query: 137 VTEDDILNQV-PHNSVDIATLIFVLSAIHPNK--FSTVVKNLFIMLKSGGIILF 187
+D + D+ + F +N+ L+ GG +
Sbjct: 119 RAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 3e-04
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 12/108 (11%)
Query: 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED 140
GV+L+VG G G + L S I + + R V + ++
Sbjct: 43 GVILDVGSGTGRWTGHLASLG--HQIEGLEPATRLV---------ELARQTHPSVTFHHG 91
Query: 141 DILN-QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
I + + L + P + + L + ++ GG +L
Sbjct: 92 TITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM 139
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 3e-04
Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 18/159 (11%)
Query: 38 EEIEQNKKKYWDL---FYKRNETKFFKDRNWTVNEFHEFVNQDVGEGV-LLEVGCGVGNF 93
++ +K WD F+ +N + + + + + F Q V + +L+VGCG G
Sbjct: 10 FNWHESAEKKWDSSAEFWNQNSQEMW--DSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYG 67
Query: 94 IFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN-QVPHNSVD 152
+ L DIS + K ++ + D+ + + +
Sbjct: 68 TYKLS--RTGYKAVGVDISEVMIQKGKER----GEGPDL---SFIKGDLSSLPFENEQFE 118
Query: 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191
I L + + + +LKS G G
Sbjct: 119 AIMAINSLE--WTEEPLRALNEIKRVLKSDGYACIAILG 155
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 30/145 (20%)
Query: 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNV----FPC 135
+G +L+VGCG G S + CD+S AV +AS+ +
Sbjct: 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAV---------EASRATLAANGVEG 247
Query: 136 DVTEDDILNQVPHNSVDIATLIFVLS--AIHPNKFST--VVKNLFI----MLKSGGIILF 187
+V ++ ++V D ++S H ++ + L L SGG +
Sbjct: 248 EVFASNVFSEVK-GRFD-----MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRI 301
Query: 188 ---RDYGLHDMAQMRFKPGHKISEN 209
D+ F I++
Sbjct: 302 VANAFLPYPDVLDETFGFHEVIAQT 326
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 4e-04
Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 6/114 (5%)
Query: 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED 140
L+ G G+G LL+ + + K L +
Sbjct: 95 SRALDCGAGIGRITKNLLTK-LYATTDLLEPVKHMLEEAKRE-LAGMPVGKFILASMETA 152
Query: 141 DILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194
+ P N+ D+ + + + F K+ L G I F++
Sbjct: 153 TL----PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG 202
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 4e-04
Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 19/144 (13%)
Query: 45 KKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKIC 104
+ Y+ ++ N + + ++ E +L++GC G +
Sbjct: 3 NSPKNSLYEEKSGHYYNAVN---PNLLKHIKKEWKE--VLDIGCSSGALGAAIK--ENGT 55
Query: 105 YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIH 164
+ + P A K +V D+ D+ D VL +
Sbjct: 56 RVSGIEAFPEAAEQAKEKLD------HVVLGDIETMDM--PYEEEQFDCVIFGDVLEHLF 107
Query: 165 -PNKFSTVVKNLFIMLKSGGIILF 187
P ++ + +K G+IL
Sbjct: 108 DPWAV---IEKVKPYIKQNGVILA 128
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 4e-04
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 17/157 (10%)
Query: 40 IEQNKKKYWDLFYKR----NETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIF 95
+ +NKKK+ K ++T F + G +++G G G
Sbjct: 2 MSENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFG--ITAGTCIDIGSGPGALSI 59
Query: 96 PLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFP-CDVTEDDILN-QVPHNSVDI 153
L+ I A D S N + N+ + + D+ N + N D+
Sbjct: 60 -ALAKQSDFSIRALDFSKHMNEIALKN----IADANLNDRIQIVQGDVHNIPIEDNYADL 114
Query: 154 ATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRD 189
+ + +T + ++ +LKSGG
Sbjct: 115 IVSRGSV--FFWEDV-ATAFREIYRILKSGGKTYIGG 148
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 6e-04
Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 8/132 (6%)
Query: 59 FFKDRNWTVNEFHEFVNQDVGE-GVLLEVGCGVGNFIFPLLSWSKICY-IHACDISPRAV 116
+D + T +E EF + G +LE+ G+G FP L + + + A ++S +
Sbjct: 62 LIQDADGT-SEAREFATRTGPVSGPVLELAAGMGRLTFPFL---DLGWEVTALELSTSVL 117
Query: 117 NFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF-VLSAIHPNKFSTVVKNL 175
F+ L +A C + + D+ + ++ + + ++
Sbjct: 118 AAFRKR-LAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSINELDEADRRGLYASV 176
Query: 176 FIMLKSGGIILF 187
L+ GG L
Sbjct: 177 REHLEPGGKFLL 188
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 6e-04
Identities = 19/140 (13%), Positives = 41/140 (29%), Gaps = 19/140 (13%)
Query: 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFF-KLNPLYDASKMNVFPC 135
D +L++GCG G + D+S A+ K P +
Sbjct: 83 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRL 142
Query: 136 DVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195
S+D I+ L ++K GG ++ G +
Sbjct: 143 P---------FSDTSMDAIIRIYAPCKAEE---------LARVVKPGGWVITATPGPRHL 184
Query: 196 AQMRFKPGHKISENLYMRQD 215
+++ +++ + +
Sbjct: 185 MELKGLIYNEVHLHAPHAEQ 204
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 7e-04
Identities = 28/161 (17%), Positives = 47/161 (29%), Gaps = 17/161 (10%)
Query: 43 NKKKYWDLFYKRNETKFFKDRNW-------TVNEFHEFVNQDVGEGVLLEVGCGVGNFIF 95
N F +FK + F+N+ + + ++GCG G
Sbjct: 3 NNNTSIHDFDFSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTL 62
Query: 96 PLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFP-CDVTEDDILN-QVPHNSVDI 153
L + K I D+ P + F N A K N + N + +D+
Sbjct: 63 FLADYVK-GQITGIDLFPDFIEIFNEN----AVKANCADRVKGITGSMDNLPFQNEELDL 117
Query: 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194
+ I + + LK GG I +
Sbjct: 118 IWSEGAIYNIGFER---GMNEWSKYLKKGGFIAVSEASWFT 155
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 8e-04
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 17/118 (14%)
Query: 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL 143
L++GCG G + + D + + + ++ N D
Sbjct: 62 LDLGCGTGQLTEKIA--QSGAEVLGTDNAATMI---------EKARQNYPHLHFDVADAR 110
Query: 144 NQVPHNSVDIATLIFVLSAIH--PNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMR 199
N +D +F + +H + ++ LKSGG + G ++ +
Sbjct: 111 NFRVDKPLD---AVFSNAMLHWVKEP-EAAIASIHQALKSGGRFVAEFGGKGNIKYIL 164
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 218 | |||
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.84 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.83 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.81 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.8 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.79 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.79 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.79 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.78 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.78 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.78 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.78 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.77 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.76 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.75 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.75 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.75 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.75 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.75 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.75 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.75 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.75 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.75 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.75 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.74 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.74 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.74 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.74 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.74 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.73 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.73 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.73 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.73 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.72 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.72 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.72 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.72 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.72 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.72 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.72 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.71 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.71 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.71 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.71 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.71 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.7 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.7 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.7 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.7 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.69 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.69 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.69 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.69 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.69 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.69 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.69 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.68 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.68 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.68 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.68 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.68 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.68 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.68 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.68 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.68 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.68 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.68 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.68 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.67 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.67 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.66 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.66 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.66 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.66 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.66 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.66 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.66 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.66 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.65 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.65 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.65 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.65 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.65 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.64 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.64 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.64 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.63 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.63 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.63 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.63 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.63 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.62 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.62 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.62 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.62 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.62 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.61 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.61 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.61 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.61 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.61 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.61 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.6 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.6 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.6 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.59 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.59 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.59 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.59 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.59 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.59 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.58 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.58 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.58 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.58 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.58 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.57 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.57 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.57 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.57 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.57 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.57 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.56 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.56 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.56 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.55 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.55 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.54 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.54 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.54 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.54 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.54 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.54 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.54 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.54 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.54 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.53 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.53 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.53 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.53 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.53 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.53 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.53 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.52 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.52 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.52 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.52 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.52 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.52 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.52 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.52 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.52 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.52 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.51 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.51 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.51 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.51 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.51 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.51 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.51 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.51 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.51 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.51 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.51 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.51 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.51 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.5 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.5 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.5 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.5 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.5 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.5 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.5 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.49 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.49 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.49 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.49 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.49 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.48 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.48 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.48 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.47 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.47 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.47 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.47 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.47 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.47 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.46 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.45 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.45 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.45 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.45 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.45 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.45 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.44 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.44 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.44 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.44 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.44 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.43 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.43 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.43 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.43 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.43 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.43 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.42 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.42 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.42 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.42 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.41 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.41 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.41 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.4 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.39 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.38 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.38 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.38 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.37 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.37 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.37 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.35 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.35 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.35 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.34 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.34 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.33 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.32 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.32 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.31 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.31 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.31 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.31 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.3 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.29 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.29 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.29 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.28 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.28 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.28 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.27 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.26 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.22 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.21 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.2 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.2 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.19 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.18 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.14 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.1 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.09 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.07 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.07 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.07 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.07 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.04 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.04 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 99.03 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.02 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.02 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.01 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.98 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.96 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.91 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.9 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.88 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.88 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.84 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.79 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.79 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.78 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.78 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.76 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.75 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.74 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.74 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.73 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.72 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.71 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.7 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.69 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.67 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.66 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.64 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.63 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.61 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.59 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.51 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.43 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.42 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.32 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.31 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.29 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.18 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.17 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.04 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.0 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.94 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.69 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.69 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.62 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.54 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.51 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.37 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.17 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.05 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.79 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.69 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.55 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 96.44 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.34 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.32 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.07 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.82 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.8 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.79 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.51 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.43 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.35 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.19 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.08 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.02 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.98 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.71 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.68 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.56 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 94.54 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.43 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.41 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 94.36 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 94.32 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.07 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.07 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.01 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.01 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 93.82 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 93.77 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 93.66 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.62 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 93.29 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 93.27 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 93.17 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.14 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.04 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.98 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 92.94 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 92.81 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 92.62 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 92.4 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.36 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.18 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 92.12 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 92.12 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 92.08 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.02 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 92.01 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 92.0 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 91.9 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 91.7 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 91.63 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 91.62 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 91.36 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 91.21 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 91.04 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 91.04 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 91.02 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 90.95 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 90.93 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 90.75 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 90.67 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 90.26 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 90.24 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 90.06 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 90.06 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 90.04 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 90.0 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 89.99 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 89.91 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 89.82 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 89.79 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 89.6 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 89.55 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.43 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.31 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 89.27 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 89.26 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 89.25 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 89.2 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 89.09 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 88.97 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 88.61 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 88.55 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 88.54 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 88.37 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 88.34 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 88.3 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 88.22 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 88.06 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 87.99 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 87.93 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 87.8 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 87.77 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 87.77 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 87.73 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 87.51 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 87.35 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 87.33 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 87.17 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 87.17 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 87.13 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 86.95 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 86.75 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 86.54 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 86.49 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 86.34 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 86.18 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 86.04 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 85.96 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 85.5 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 85.43 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 85.41 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 85.39 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 85.26 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 85.17 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 85.13 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 85.04 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 84.92 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 84.62 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 84.57 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 84.56 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 84.09 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 83.92 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 83.86 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 83.78 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 83.74 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 83.54 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 83.47 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 83.45 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 83.42 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 83.34 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 83.31 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 83.29 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 83.27 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 83.12 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 82.96 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 82.89 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 82.79 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 82.72 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 82.67 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 82.65 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 82.65 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 82.61 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 82.35 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 82.24 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 81.46 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 81.2 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 80.73 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 80.5 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 80.06 |
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=145.27 Aligned_cols=140 Identities=11% Similarity=0.072 Sum_probs=106.0
Q ss_pred hhhHhhHHHHHHHhhhccCCCcccchHHHHHHh---hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHH
Q psy1107 42 QNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV---NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF 118 (218)
Q Consensus 42 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~ 118 (218)
....++|+..|......|... .....+...+ ....++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.
T Consensus 30 ~~~~~~Wd~~y~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G--~~V~gvD~S~~~i~~ 105 (252)
T 2gb4_A 30 VLTLEDWKEKWVTRHISFHQE--QGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRG--HTVVGVEISEIGIRE 105 (252)
T ss_dssp CCCHHHHHHHHHHTCCTTCCT--TCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTT--CEEEEECSCHHHHHH
T ss_pred cCCHHHHHHHHhcCCCCcccC--CCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCC--CeEEEEECCHHHHHH
Confidence 345678999998765554221 1222233332 122467899999999999999999876 599999999999999
Q ss_pred HHhCCcc------------------cCCCceEEeccCCCcccccCCC-CCcccEEEechhhcCCCcchHHHHHHHHHHhc
Q psy1107 119 FKLNPLY------------------DASKMNVFPCDVTEDDILNQVP-HNSVDIATLIFVLSAIHPNKFSTVVKNLFIML 179 (218)
Q Consensus 119 ~~~~~~~------------------~~~~i~~~~~d~~~~~~~~~~~-~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L 179 (218)
|+++... ...++.+.++|+.+. +.. .++||+|++..+++++++++...++.++.++|
T Consensus 106 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l----~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~L 181 (252)
T 2gb4_A 106 FFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL----PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLL 181 (252)
T ss_dssp HHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG----GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTE
T ss_pred HHHhcccccccccccccccccccccCCCceEEEECccccC----CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHc
Confidence 9765421 235799999999873 332 26899999999999998888889999999999
Q ss_pred cCCeEEEEEe
Q psy1107 180 KSGGIILFRD 189 (218)
Q Consensus 180 k~gG~li~~~ 189 (218)
||||.|++..
T Consensus 182 kpGG~l~l~~ 191 (252)
T 2gb4_A 182 RKEFQYLVAV 191 (252)
T ss_dssp EEEEEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9999997544
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-20 Score=142.87 Aligned_cols=112 Identities=16% Similarity=0.275 Sum_probs=94.9
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
...++.+|||+|||+|..+..+++.. ++++|+|+|+|+.+++.|+++....+ .++.++++|+.+ .++ ++|
T Consensus 67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~----~~~--~~~ 140 (261)
T 4gek_A 67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD----IAI--ENA 140 (261)
T ss_dssp HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT----CCC--CSE
T ss_pred hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc----ccc--ccc
Confidence 35788999999999999999998763 56799999999999999998755433 579999999876 233 469
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
|+|++..+++++++.+...++++++++|||||.|++.+....
T Consensus 141 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~ 182 (261)
T 4gek_A 141 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 182 (261)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred ccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence 999999999999887888999999999999999999875443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-19 Score=135.48 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=98.4
Q ss_pred HHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcc
Q psy1107 72 EFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 72 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
.++....++.+|||+|||+|.++..++...|..+++++|+|+.+++.++.+....+ ++.+.++|+.+ .+++ ++|
T Consensus 37 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~----~~~~-~~f 110 (234)
T 3dtn_A 37 SIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSK----YDFE-EKY 110 (234)
T ss_dssp HTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTT----CCCC-SCE
T ss_pred HHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhc----cCCC-CCc
Confidence 33333567789999999999999999998877899999999999999998876554 89999999877 3344 689
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
|+|++..+++|+++.....+++++.++|+|||.+++.+.....
T Consensus 111 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 153 (234)
T 3dtn_A 111 DMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGE 153 (234)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred eEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence 9999999999997556667999999999999999998855433
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-20 Score=142.37 Aligned_cols=147 Identities=15% Similarity=0.191 Sum_probs=105.1
Q ss_pred hhHhhHHHHHHHhhhccCCC--cccchHHHHHHh-hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHH
Q psy1107 43 NKKKYWDLFYKRNETKFFKD--RNWTVNEFHEFV-NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFF 119 (218)
Q Consensus 43 ~~~~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~ 119 (218)
....+|+.+|......+..+ ..|..+.+..++ ....++.+|||||||+|.++..++..+. .+|+|+|+|+.+++.|
T Consensus 16 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a 94 (263)
T 2a14_A 16 LPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREEL 94 (263)
T ss_dssp CHHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHH
T ss_pred CHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHH
Confidence 45678998886654443222 456666666664 2345678999999999988877665542 3799999999999999
Q ss_pred HhCCcccC------------------------------CCce-EEeccCCCcccccCCCCCcccEEEechhhcCCCc--c
Q psy1107 120 KLNPLYDA------------------------------SKMN-VFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHP--N 166 (218)
Q Consensus 120 ~~~~~~~~------------------------------~~i~-~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~--~ 166 (218)
++++...+ .++. ++++|+.+.....+...++||+|++..+++|+.+ +
T Consensus 95 ~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~ 174 (263)
T 2a14_A 95 EKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLD 174 (263)
T ss_dssp HHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHH
T ss_pred HHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHH
Confidence 87532211 0122 7889988732111223468999999999998632 5
Q ss_pred hHHHHHHHHHHhccCCeEEEEEec
Q psy1107 167 KFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 167 ~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+...++.++.++|||||.|++...
T Consensus 175 ~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 175 AYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEe
Confidence 677899999999999999999864
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-19 Score=136.36 Aligned_cols=104 Identities=19% Similarity=0.284 Sum_probs=89.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
......+|||||||+|..+..++..+ .+|+|+|+|+.+++.|++. .++.+.++|+.+ .++++++||+|+
T Consensus 36 ~~~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~-----~~v~~~~~~~e~----~~~~~~sfD~v~ 104 (257)
T 4hg2_A 36 VAPARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRH-----PRVTYAVAPAED----TGLPPASVDVAI 104 (257)
T ss_dssp HSSCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCC-----TTEEEEECCTTC----CCCCSSCEEEEE
T ss_pred hcCCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhc-----CCceeehhhhhh----hcccCCcccEEE
Confidence 34556799999999999999999877 4899999999999877643 579999999877 577888999999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+..++|++ +...++.++.++|||||.|++..++..
T Consensus 105 ~~~~~h~~---~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 105 AAQAMHWF---DLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp ECSCCTTC---CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred EeeehhHh---hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 99999888 466899999999999999999887644
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=133.44 Aligned_cols=141 Identities=19% Similarity=0.227 Sum_probs=108.5
Q ss_pred hHhhHHHHHHHhhhccCCCcccchHHHHHHh-hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC
Q psy1107 44 KKKYWDLFYKRNETKFFKDRNWTVNEFHEFV-NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 44 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~ 122 (218)
...+|+..|......|... .....+..++ ....++.+|||+|||+|.++..++.. ..+++++|+|+.+++.++++
T Consensus 32 ~~~~w~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~ 107 (235)
T 3lcc_A 32 EEGGWEKCWEEEITPWDQG--RATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANET 107 (235)
T ss_dssp HHHHHHHHHHTTCCTTCCS--SCCHHHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCcccC--CCCHHHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHH
Confidence 3567998887765555322 1223333333 12334569999999999999998764 46999999999999999988
Q ss_pred Cccc--CCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 123 PLYD--ASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 123 ~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
.... ..++.+.++|+.+. . +..+||+|++..+++++++++...++..+.++|+|||.|++.++...
T Consensus 108 ~~~~~~~~~v~~~~~d~~~~----~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 175 (235)
T 3lcc_A 108 YGSSPKAEYFSFVKEDVFTW----R-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPIT 175 (235)
T ss_dssp HTTSGGGGGEEEECCCTTTC----C-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCS
T ss_pred hhccCCCcceEEEECchhcC----C-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccc
Confidence 6542 25799999998772 2 34489999999999999888999999999999999999999886543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.1e-19 Score=134.61 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=99.0
Q ss_pred HHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCC
Q psy1107 69 EFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 69 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 148 (218)
.+..++....++.+|||+|||+|.++..++..++ +|+++|+|+.+++.++++.. ..++.+.+.|+.+......++.
T Consensus 46 ~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~~~ 121 (245)
T 3ggd_A 46 DLPRFELLFNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT--AANISYRLLDGLVPEQAAQIHS 121 (245)
T ss_dssp HHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC--CTTEEEEECCTTCHHHHHHHHH
T ss_pred HHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc--ccCceEEECccccccccccccc
Confidence 3344445567788999999999999999998876 89999999999999998763 2479999999987432222211
Q ss_pred -CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 149 -NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 149 -~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
..||+|++..+++++++++...++..+.++|||||.+++.++...+
T Consensus 122 ~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 168 (245)
T 3ggd_A 122 EIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC 168 (245)
T ss_dssp HHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH
T ss_pred ccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence 2489999999999998888999999999999999999998876544
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-19 Score=132.85 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=87.2
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-------------cCCCceEEeccCCCccccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-------------DASKMNVFPCDVTEDDILN 144 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-------------~~~~i~~~~~d~~~~~~~~ 144 (218)
.++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.|+++... ...++.+.++|+.+ .
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g--~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~----l 94 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQG--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA----L 94 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS----S
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCC--CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc----C
Confidence 467899999999999999999875 5999999999999999876432 13579999999977 3
Q ss_pred CCCC-CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 145 QVPH-NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 145 ~~~~-~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
+++. ++||+|++..+++++++++...+++++.++|||||.+++
T Consensus 95 ~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l 138 (203)
T 1pjz_A 95 TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL 138 (203)
T ss_dssp THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred CcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 3332 589999999999999877778899999999999998444
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=129.95 Aligned_cols=109 Identities=21% Similarity=0.253 Sum_probs=92.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++.... .++.+.+.|+.+. . +.++||+|
T Consensus 47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~----~-~~~~fD~v 118 (216)
T 3ofk_A 47 LSSGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRW-SHISWAATDILQF----S-TAELFDLI 118 (216)
T ss_dssp TTTSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTC-SSEEEEECCTTTC----C-CSCCEEEE
T ss_pred cccCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccC-CCeEEEEcchhhC----C-CCCCccEE
Confidence 445567899999999999999998876 49999999999999999886653 3899999999772 2 46689999
Q ss_pred EechhhcCCC-cchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 155 TLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 155 ~~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
++..+++|++ ++....++..+.++|+|||.+++....
T Consensus 119 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 119 VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp EEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 9999999997 355678899999999999999997643
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=130.01 Aligned_cols=141 Identities=19% Similarity=0.275 Sum_probs=108.1
Q ss_pred hHhhHHHHHHHhhh----ccCCCcccchHHHHHHh-hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHH
Q psy1107 44 KKKYWDLFYKRNET----KFFKDRNWTVNEFHEFV-NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF 118 (218)
Q Consensus 44 ~~~~w~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~ 118 (218)
..++|+.+|..... .++.. ...+..++ ....++.+|||+|||+|.++..++..++. +++++|+|+.+++.
T Consensus 6 ~~~~W~~~y~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~ 80 (215)
T 2pxx_A 6 EVEYWDQRYQGAADSAPYDWFGD----FSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAA 80 (215)
T ss_dssp CHHHHHHHTTTTTTSCCCCTTCC----HHHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHH
T ss_pred chhHHHHHhccCCCCCCcccccC----HHHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHH
Confidence 45689998876542 22122 12333333 33467789999999999999999988754 89999999999999
Q ss_pred HHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCC-------------cchHHHHHHHHHHhccCCeEE
Q psy1107 119 FKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIH-------------PNKFSTVVKNLFIMLKSGGII 185 (218)
Q Consensus 119 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~-------------~~~~~~~l~~~~~~Lk~gG~l 185 (218)
++.+... ..++.+...|+.+ .+++.++||+|++..+++++. ..+...++..+.++|+|||.+
T Consensus 81 a~~~~~~-~~~i~~~~~d~~~----~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 155 (215)
T 2pxx_A 81 MQACYAH-VPQLRWETMDVRK----LDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRF 155 (215)
T ss_dssp HHHHTTT-CTTCEEEECCTTS----CCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred HHHhccc-CCCcEEEEcchhc----CCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEE
Confidence 9987653 3578999999877 355667899999988876654 346789999999999999999
Q ss_pred EEEecCCCc
Q psy1107 186 LFRDYGLHD 194 (218)
Q Consensus 186 i~~~~~~~~ 194 (218)
++.++....
T Consensus 156 i~~~~~~~~ 164 (215)
T 2pxx_A 156 ISMTSAAPH 164 (215)
T ss_dssp EEEESCCHH
T ss_pred EEEeCCCcH
Confidence 999987654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=133.25 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=98.4
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||+|||+|.++..++... ..+++++|+|+.+++.++++.... .++.+.+.|+.+ .+++.++||+|+
T Consensus 52 ~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~----~~~~~~~fD~v~ 125 (266)
T 3ujc_A 52 ELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN-NKIIFEANDILT----KEFPENNFDLIY 125 (266)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC-TTEEEEECCTTT----CCCCTTCEEEEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEECcccc----CCCCCCcEEEEe
Confidence 34567899999999999999999874 369999999999999999987654 689999999987 456677999999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+..+++|+++.+...++..+.++|+|||.+++.++....
T Consensus 126 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 164 (266)
T 3ujc_A 126 SRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE 164 (266)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESC
T ss_pred HHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 999999998779999999999999999999998865443
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=124.70 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=95.5
Q ss_pred HHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCC
Q psy1107 69 EFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 69 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 148 (218)
.+...+....++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++.. ...++.+.++|+.+ . ++.
T Consensus 36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~---~~~~~~~~~~d~~~----~-~~~ 105 (218)
T 3ou2_A 36 AALERLRAGNIRGDVLELASGTGYWTRHLSGLA--DRVTALDGSAEMIAEAGRH---GLDNVEFRQQDLFD----W-TPD 105 (218)
T ss_dssp HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHGGG---CCTTEEEEECCTTS----C-CCS
T ss_pred HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHhc---CCCCeEEEeccccc----C-CCC
Confidence 344444545677899999999999999998874 5999999999999999982 22579999999876 2 566
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
++||+|++..+++|+++.....+++.+.++|+|||.+++.+...
T Consensus 106 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 106 RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 79999999999999986556899999999999999999988665
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-18 Score=130.90 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=91.7
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-CCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-ASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+|||+|||+|.++..++..+ ..+++++|+|+.+++.++++.... ..++.+...|+.+ .+++.++||+|++.
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~~~~~fD~v~~~ 153 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQD----FTPEPDSYDVIWIQ 153 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGG----CCCCSSCEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhh----cCCCCCCEEEEEEc
Confidence 57899999999999999988776 359999999999999999887654 3468888998766 34556689999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+++|+++.....++..+.++|+|||.+++.+..
T Consensus 154 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 187 (241)
T 2ex4_A 154 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM 187 (241)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 9999997555678999999999999999997754
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-18 Score=130.18 Aligned_cols=108 Identities=16% Similarity=0.196 Sum_probs=93.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+ ..+++++|+|+.+++.++++.... .++.+.+.|+.. .+++.++||+|++
T Consensus 91 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~----~~~~~~~fD~v~~ 164 (254)
T 1xtp_A 91 GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMET----ATLPPNTYDLIVI 164 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGG----CCCCSSCEEEEEE
T ss_pred ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHH----CCCCCCCeEEEEE
Confidence 3467899999999999999998876 348999999999999999876543 578899998876 3456678999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
..+++|+++.+...++..+.++|+|||.+++.+.
T Consensus 165 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 165 QWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 9999999877789999999999999999999874
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=125.89 Aligned_cols=105 Identities=21% Similarity=0.263 Sum_probs=89.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+ .+++++|+++.+++.++.+.. .++.+..+|+.+ .+++ ++||+|++
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~----~~~~-~~fD~v~~ 112 (220)
T 3hnr_A 43 NKSFGNVLEFGVGTGNLTNKLLLAG--RTVYGIEPSREMRMIAKEKLP---KEFSITEGDFLS----FEVP-TSIDTIVS 112 (220)
T ss_dssp HTCCSEEEEECCTTSHHHHHHHHTT--CEEEEECSCHHHHHHHHHHSC---TTCCEESCCSSS----CCCC-SCCSEEEE
T ss_pred ccCCCeEEEeCCCCCHHHHHHHhCC--CeEEEEeCCHHHHHHHHHhCC---CceEEEeCChhh----cCCC-CCeEEEEE
Confidence 3477899999999999999998874 599999999999999998755 578999999877 3444 68999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
..+++|+++.....++.++.++|||||.+++.+..
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 99999997544455999999999999999998744
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-18 Score=127.10 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=94.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||+|..+..++.. +..+++++|+|+.+++.++++....+.++.+.+.|+.+ .+++.++||+|
T Consensus 19 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~~~~fD~v 93 (209)
T 2p8j_A 19 NESNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRK----LPFKDESMSFV 93 (209)
T ss_dssp HHSSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTS----CCSCTTCEEEE
T ss_pred hccCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhh----CCCCCCceeEE
Confidence 45567889999999999985444333 33699999999999999998765445678999999877 45666789999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
++..+++|+++.+...+++.+.++|+|||.+++.++...+
T Consensus 94 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 133 (209)
T 2p8j_A 94 YSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKD 133 (209)
T ss_dssp EECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTS
T ss_pred EEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccc
Confidence 9999999998778999999999999999999998876544
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.7e-18 Score=127.14 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=92.6
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC------CCceEEeccCCCcccccCCCCCc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA------SKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~------~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
..++.+|||+|||+|.++..++..++..+++++|+|+.+++.++++....+ .++.+.++|+.. ...+.++
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~ 102 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTY----QDKRFHG 102 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTS----CCGGGCS
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccc----ccccCCC
Confidence 346789999999999999999988776799999999999999998754332 279999999855 3344468
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
||+|++..+++|+++.+...+++.+.++|||||.+++...
T Consensus 103 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 103 YDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp CSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred cCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 9999999999999766778999999999999998877664
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=130.35 Aligned_cols=109 Identities=18% Similarity=0.280 Sum_probs=91.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++.+ +.+..+|+.+. ..++++++||+|
T Consensus 37 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~-------~~~~~~d~~~~--~~~~~~~~fD~i 105 (240)
T 3dli_A 37 PYFKGCRRVLDIGCGRGEFLELCKEEG--IESIGVDINEDMIKFCEGK-------FNVVKSDAIEY--LKSLPDKYLDGV 105 (240)
T ss_dssp GGTTTCSCEEEETCTTTHHHHHHHHHT--CCEEEECSCHHHHHHHHTT-------SEEECSCHHHH--HHTSCTTCBSEE
T ss_pred hhhcCCCeEEEEeCCCCHHHHHHHhCC--CcEEEEECCHHHHHHHHhh-------cceeeccHHHH--hhhcCCCCeeEE
Confidence 445677899999999999999998875 4899999999999999876 67777776552 125677899999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
++..+++|+++.+...++.++.++|||||.+++.......
T Consensus 106 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 145 (240)
T 3dli_A 106 MISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS 145 (240)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS
T ss_pred EECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch
Confidence 9999999998778899999999999999999998765443
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=126.45 Aligned_cols=109 Identities=18% Similarity=0.144 Sum_probs=93.9
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||+|||+|.++..++..+ .+++++|+++.+++.++.+.. ..++.+++.|+.+ .+++.++||+|+
T Consensus 50 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~----~~~~~~~fD~v~ 121 (242)
T 3l8d_A 50 YVKKEAEVLDVGCGDGYGTYKLSRTG--YKAVGVDISEVMIQKGKERGE--GPDLSFIKGDLSS----LPFENEQFEAIM 121 (242)
T ss_dssp HSCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHTTTC--BTTEEEEECBTTB----CSSCTTCEEEEE
T ss_pred HcCCCCeEEEEcCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhcc--cCCceEEEcchhc----CCCCCCCccEEE
Confidence 34578899999999999999999875 599999999999999998852 3579999999887 456677999999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+..+++|++ +...++..+.++|+|||.+++..+....
T Consensus 122 ~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 158 (242)
T 3l8d_A 122 AINSLEWTE--EPLRALNEIKRVLKSDGYACIAILGPTA 158 (242)
T ss_dssp EESCTTSSS--CHHHHHHHHHHHEEEEEEEEEEEECTTC
T ss_pred EcChHhhcc--CHHHHHHHHHHHhCCCeEEEEEEcCCcc
Confidence 999999994 7789999999999999999998865443
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=125.50 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=94.8
Q ss_pred hHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC
Q psy1107 67 VNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV 146 (218)
Q Consensus 67 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 146 (218)
...+..++....++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++.+. ++.+...|+.. .+
T Consensus 31 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~----~~- 98 (211)
T 3e23_A 31 SATLTKFLGELPAGAKILELGCGAGYQAEAMLAAG--FDVDATDGSPELAAEASRRL-----GRPVRTMLFHQ----LD- 98 (211)
T ss_dssp CHHHHHHHTTSCTTCEEEESSCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH-----TSCCEECCGGG----CC-
T ss_pred hHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHcC--CeEEEECCCHHHHHHHHHhc-----CCceEEeeecc----CC-
Confidence 44555555566778899999999999999998874 59999999999999999864 46777788766 23
Q ss_pred CCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 147 PHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+.++||+|++..+++|+++++...++..+.++|+|||.+++....
T Consensus 99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 99 AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 567899999999999998778899999999999999999997643
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.75 E-value=9.1e-18 Score=126.88 Aligned_cols=110 Identities=22% Similarity=0.316 Sum_probs=92.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC------CCceEEeccCCCcccccCCCCCc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA------SKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~------~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
..++.+|||+|||+|.++..++..++..+++++|+|+.+++.++++....+ .++.+.+.|+.. .+.+.++
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~ 102 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY----RDKRFSG 102 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS----CCGGGTT
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc----cccccCC
Confidence 356789999999999999999988876799999999999999998754322 278999999855 3444568
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
||+|++..+++|+++.+...+++.+.++|||||+++....
T Consensus 103 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 103 YDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp CSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred CCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence 9999999999999766668999999999999997776654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=123.56 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=90.8
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++....+ .++.+...|+.+ .++ .++||+|++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~-~~~~D~v~~ 103 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANG--YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN----LTF-DRQYDFILS 103 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG----CCC-CCCEEEEEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh----CCC-CCCceEEEE
Confidence 466799999999999999998874 599999999999999998755443 378999999876 233 568999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
..+++|+++++...++..+.++|+|||.+++.+.
T Consensus 104 ~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 104 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 9999999878899999999999999999887653
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=124.18 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=92.3
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
+.+|||+|||+|.++..++..+ .+++++|+|+.+++.++.+. .++.+.++|+.+ .+++.++||+|++..+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~----~~~~~~~fD~v~~~~~ 111 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLG--HQIEGLEPATRLVELARQTH----PSVTFHHGTITD----LSDSPKRWAGLLAWYS 111 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTT--CCEEEECCCHHHHHHHHHHC----TTSEEECCCGGG----GGGSCCCEEEEEEESS
T ss_pred CCeEEEecCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHhC----CCCeEEeCcccc----cccCCCCeEEEEehhh
Confidence 7899999999999999998875 48999999999999999863 378999999876 3455679999999999
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
++|+++++...+++.+.++|+|||.+++..+....
T Consensus 112 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 146 (203)
T 3h2b_A 112 LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPS 146 (203)
T ss_dssp STTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSS
T ss_pred HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCc
Confidence 99998789999999999999999999998865544
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-18 Score=127.88 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=96.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|.++..++..+ |..+++++|+|+.+++.++.+....+ .++.+...|+.+ .+++.++||+
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~~~~~fD~ 109 (219)
T 3dh0_A 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK----IPLPDNTVDF 109 (219)
T ss_dssp TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTB----CSSCSSCEEE
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccccc----CCCCCCCeeE
Confidence 34567899999999999999999885 66799999999999999998865444 479999999876 4566778999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
|++..++++++ +...+++.+.++|+|||.+++.++...
T Consensus 110 v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~ 147 (219)
T 3dh0_A 110 IFMAFTFHELS--EPLKFLEELKRVAKPFAYLAIIDWKKE 147 (219)
T ss_dssp EEEESCGGGCS--SHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred EEeehhhhhcC--CHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence 99999999994 788999999999999999999875544
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=124.04 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=91.2
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
+.+|||+|||+|.++..++.. +..+++++|+|+.+++.++.+....+ .++.+.+.|+.+ .+++.++||+|++.
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~v~~~ 118 (219)
T 3dlc_A 44 AGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN----IPIEDNYADLIVSR 118 (219)
T ss_dssp EEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB----CSSCTTCEEEEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH----CCCCcccccEEEEC
Confidence 349999999999999999887 56799999999999999998865443 479999999977 45667799999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+++|+ .+...+++.+.++|+|||.+++.+..
T Consensus 119 ~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 119 GSVFFW--EDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp SCGGGC--SCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred chHhhc--cCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 999999 47889999999999999999998644
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=129.54 Aligned_cols=108 Identities=17% Similarity=0.218 Sum_probs=92.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++..++ +++++|+|+.+++.++++....+ .++.+..+|+.+ .++++++||+|
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~----l~~~~~~fD~V 107 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ----MPFTDERFHIV 107 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C----CCSCTTCEEEE
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh----CCCCCCCEEEE
Confidence 345778999999999999999998774 99999999999999988754433 579999999877 45677799999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
++..+++|++ +...++.++.++|||||.|++.+..
T Consensus 108 ~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 108 TCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEhhhhHhcC--CHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 9999999995 7789999999999999999997644
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=125.30 Aligned_cols=111 Identities=21% Similarity=0.368 Sum_probs=93.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC------CceEEeccCCCcccccCCCCCc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS------KMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~------~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
..++.+|||+|||+|.++..++..+ .+++++|+++.+++.++.+....+. ++.+...|+.. .+++.++
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~ 101 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASKG--YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASS----LSFHDSS 101 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTS----CCSCTTC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccc----cCCCCCc
Confidence 4578899999999999999998874 5999999999999999987654332 57889999876 4556779
Q ss_pred ccEEEechhhcCCC-cchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 151 VDIATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 151 ~D~i~~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
||+|++..++++++ +.....+++.+.++|+|||.+++.++...
T Consensus 102 ~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (235)
T 3sm3_A 102 FDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN 145 (235)
T ss_dssp EEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred eeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 99999999999996 34455899999999999999999886543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.1e-18 Score=131.19 Aligned_cols=109 Identities=23% Similarity=0.286 Sum_probs=94.8
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++..+|..+++++|+++.+++.++.+....+ .++.+...|+.. .+++.++||+|
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~~~~~fD~v 109 (276)
T 3mgg_A 34 VYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS----LPFEDSSFDHI 109 (276)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG----CCSCTTCEEEE
T ss_pred cCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccccc----CCCCCCCeeEE
Confidence 3467889999999999999999998877899999999999999998765443 579999999876 45667799999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
++..+++|++ +...++..+.++|+|||.+++.+.
T Consensus 110 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 110 FVCFVLEHLQ--SPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEechhhhcC--CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999999995 677999999999999999999763
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=126.53 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=92.6
Q ss_pred HHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcc
Q psy1107 72 EFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 72 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
..+....++.+|||+|||+|.++..++..++ +++|+|+|+.+++.++++... ++.+.+.|+.+. .++++|
T Consensus 35 ~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~~-----~~~~~f 104 (250)
T 2p7i_A 35 RAFTPFFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKD---GITYIHSRFEDA-----QLPRRY 104 (250)
T ss_dssp HHHGGGCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGC-----CCSSCE
T ss_pred HHHHhhcCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHHc-----CcCCcc
Confidence 3334445678999999999999999998775 899999999999999987543 789999988762 356689
Q ss_pred cEEEechhhcCCCcchHHHHHHHHH-HhccCCeEEEEEecCCC
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLF-IMLKSGGIILFRDYGLH 193 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~-~~Lk~gG~li~~~~~~~ 193 (218)
|+|++..+++|++ +...+++++. ++|||||.+++......
T Consensus 105 D~v~~~~~l~~~~--~~~~~l~~~~~~~LkpgG~l~i~~~~~~ 145 (250)
T 2p7i_A 105 DNIVLTHVLEHID--DPVALLKRINDDWLAEGGRLFLVCPNAN 145 (250)
T ss_dssp EEEEEESCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred cEEEEhhHHHhhc--CHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence 9999999999995 6789999999 99999999999875443
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=131.67 Aligned_cols=112 Identities=14% Similarity=0.232 Sum_probs=91.2
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC------------------------------
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA------------------------------ 127 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~------------------------------ 127 (218)
.++.+|||||||+|.++..++...+..+|+|+|+|+.+++.|+++.....
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 46789999999999999999998766799999999999999998854322
Q ss_pred -----------------------------CCceEEeccCCCccc-ccCCCCCcccEEEechhhcCC----CcchHHHHHH
Q psy1107 128 -----------------------------SKMNVFPCDVTEDDI-LNQVPHNSVDIATLIFVLSAI----HPNKFSTVVK 173 (218)
Q Consensus 128 -----------------------------~~i~~~~~d~~~~~~-~~~~~~~~~D~i~~~~~l~~~----~~~~~~~~l~ 173 (218)
.++.|.++|+..... ...+..++||+|+|..+++|+ .++....+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 479999999876321 123456799999999998777 3457889999
Q ss_pred HHHHhccCCeEEEEEe
Q psy1107 174 NLFIMLKSGGIILFRD 189 (218)
Q Consensus 174 ~~~~~Lk~gG~li~~~ 189 (218)
++.++|+|||+|++..
T Consensus 205 ~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 205 RIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHEEEEEEEEEEC
T ss_pred HHHHHhCCCcEEEEec
Confidence 9999999999999964
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-17 Score=129.32 Aligned_cols=110 Identities=16% Similarity=0.126 Sum_probs=95.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCc-cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~-~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||+|||+|.++..++...|. .+++++|+|+.+++.++++....+.++.+.+.|+.+ .+++ ++||+
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~----~~~~-~~fD~ 92 (284)
T 3gu3_A 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE----IELN-DKYDI 92 (284)
T ss_dssp SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTT----CCCS-SCEEE
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhh----cCcC-CCeeE
Confidence 34567889999999999999999988763 799999999999999998866555689999999986 3333 48999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|++..++++++ +...++.++.++|+|||.+++.+..
T Consensus 93 v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 93 AICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEECChhhcCC--CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 99999999995 7789999999999999999998754
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.2e-17 Score=125.01 Aligned_cols=105 Identities=23% Similarity=0.349 Sum_probs=91.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++.+......++.+..+|+.+ .++++++||+|+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~~~~fD~v~ 109 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARG--YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARA----IPLPDESVHGVI 109 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTT--CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTS----CCSCTTCEEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhhccCCceEEEEccccc----CCCCCCCeeEEE
Confidence 45677899999999999999998874 599999999999999998863334689999999876 456677899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+..++++++ +...++.++.++|+|||.+++.
T Consensus 110 ~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 110 VVHLWHLVP--DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp EESCGGGCT--THHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCchhhcC--CHHHHHHHHHHHCCCCcEEEEE
Confidence 999999995 6889999999999999999987
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=123.62 Aligned_cols=140 Identities=15% Similarity=0.209 Sum_probs=99.0
Q ss_pred HhhHHHHHHH---hhhccCCCcccchHHHHHHhhhcCCCcEEEEecCCCch----hHHHHhhcCC----ccEEEEEeCCH
Q psy1107 45 KKYWDLFYKR---NETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGN----FIFPLLSWSK----ICYIHACDISP 113 (218)
Q Consensus 45 ~~~w~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~----~~~~~~~~~~----~~~v~~~D~s~ 113 (218)
.+.|..+... +.+.||++..... .+...+....++.+|||+|||+|. ++..+++..+ ..+|+|+|+|+
T Consensus 69 ~~e~~~l~~~lt~~~t~FfRd~~~f~-~l~~~llp~~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~ 147 (274)
T 1af7_A 69 SAEWQAFINALTTNLTAFFREAHHFP-ILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDT 147 (274)
T ss_dssp CTHHHHHHHHHCCCCCCTTTTTTHHH-HHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCH
T ss_pred HHHHHHHHHHHhhcCccccCChHHHH-HHHHHccCCCCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCH
Confidence 4466655432 3456666544322 222222111346799999999998 4555555422 36999999999
Q ss_pred HHHHHHHhCCcc-----------------------cC---------CCceEEeccCCCcccccCCC-CCcccEEEechhh
Q psy1107 114 RAVNFFKLNPLY-----------------------DA---------SKMNVFPCDVTEDDILNQVP-HNSVDIATLIFVL 160 (218)
Q Consensus 114 ~~~~~~~~~~~~-----------------------~~---------~~i~~~~~d~~~~~~~~~~~-~~~~D~i~~~~~l 160 (218)
.+++.|++.... .+ .++.|.+.|+.+ .+++ .++||+|+|..++
T Consensus 148 ~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~----~~~~~~~~fDlI~crnvl 223 (274)
T 1af7_A 148 EVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLE----KQYNVPGPFDAIFCRNVM 223 (274)
T ss_dssp HHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTC----SSCCCCCCEEEEEECSSG
T ss_pred HHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCC----CCCCcCCCeeEEEECCch
Confidence 999999987310 00 258899999876 2333 4589999999999
Q ss_pred cCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 161 SAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.|++++....++..+.+.|+|||+|++..
T Consensus 224 iyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 224 IYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp GGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred HhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 99987778999999999999999999854
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-17 Score=130.12 Aligned_cols=112 Identities=17% Similarity=0.245 Sum_probs=92.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCccc---CCCceEEeccCCCccccc--CCCCCc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYD---ASKMNVFPCDVTEDDILN--QVPHNS 150 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~---~~~i~~~~~d~~~~~~~~--~~~~~~ 150 (218)
..++.+|||+|||+|..+..++... +..+++|+|+|+.+++.++++.... ..++.+.++|+.+..... .+..++
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK 113 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence 3578899999999999999999754 6679999999999999999876544 468999999998733211 122378
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
||+|++..+++|+ ++..++.++.++|+|||.|++..+.
T Consensus 114 fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 114 IDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp EEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9999999999999 7889999999999999999995543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.9e-17 Score=125.03 Aligned_cols=104 Identities=12% Similarity=0.223 Sum_probs=89.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++.. ++.++++|+.+ .++ .++||+|++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~----~~~-~~~fD~v~~ 116 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNP----DAVLHHGDMRD----FSL-GRRFSAVTC 116 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCT----TSEEEECCTTT----CCC-SCCEEEEEE
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC----CCEEEECChHH----CCc-cCCcCEEEE
Confidence 3566899999999999999999876 489999999999999998743 78999999877 233 568999999
Q ss_pred ch-hhcCCC-cchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 157 IF-VLSAIH-PNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 157 ~~-~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.. +++|++ +++...++..+.++|+|||.|++..+.
T Consensus 117 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 153 (263)
T 3pfg_A 117 MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWW 153 (263)
T ss_dssp CTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred cCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 98 999996 367889999999999999999997543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-17 Score=127.10 Aligned_cols=108 Identities=19% Similarity=0.293 Sum_probs=92.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|.++..++..++. +++++|+|+.+++.++++....+ .++.+.+.|+.+ .+++.++||
T Consensus 42 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~fD 116 (257)
T 3f4k_A 42 NELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDN----LPFQNEELD 116 (257)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS----CSSCTTCEE
T ss_pred hcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh----CCCCCCCEE
Confidence 34567789999999999999999998764 99999999999999998765444 359999999966 456677999
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|++..+++|+ +...++..+.++|+|||.+++.+.
T Consensus 117 ~v~~~~~l~~~---~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 117 LIWSEGAIYNI---GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp EEEEESCSCCC---CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred EEEecChHhhc---CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999999998 477899999999999999999873
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-17 Score=127.78 Aligned_cols=106 Identities=14% Similarity=0.229 Sum_probs=92.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++.. +..+++++|+|+.+++.++++....+ .++.+.+.|+.+ .+++.++||+|
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~i 118 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD----LPFRNEELDLI 118 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS----CCCCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhh----CCCCCCCEEEE
Confidence 467889999999999999999987 55699999999999999998765443 469999999976 45567799999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
++..+++++ +...+++.+.++|+|||.+++.+.
T Consensus 119 ~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 119 WSEGAIYNI---GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp EESSCGGGT---CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred EEcCCceec---CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999999999 568899999999999999999874
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=129.66 Aligned_cols=146 Identities=19% Similarity=0.291 Sum_probs=101.5
Q ss_pred hHhhHHHHHHHhhhccCCC--cccchHHHHHHhh-hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHH
Q psy1107 44 KKKYWDLFYKRNETKFFKD--RNWTVNEFHEFVN-QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFK 120 (218)
Q Consensus 44 ~~~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~ 120 (218)
...+|+.+|......+... ..+....+..++. ...++.+|||+|||+|.++..++..++ .+|+++|+|+.+++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~ 96 (265)
T 2i62_A 18 PRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQ 96 (265)
T ss_dssp HHHHHHHHHCCCSSCHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhCcCCcchhHHHHHHhhHHHHHHHhcccccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHH
Confidence 4568888875543222110 0111112223322 234668999999999999999887764 48999999999999998
Q ss_pred hCCcccCC------------------------------Cc-eEEeccCCCcccccCCCCCcccEEEechhhcCCCcc--h
Q psy1107 121 LNPLYDAS------------------------------KM-NVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPN--K 167 (218)
Q Consensus 121 ~~~~~~~~------------------------------~i-~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~--~ 167 (218)
++....+. ++ .+..+|+.+.........++||+|++..+++++++. +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 176 (265)
T 2i62_A 97 KWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPA 176 (265)
T ss_dssp HHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHH
T ss_pred HHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHH
Confidence 76543211 16 889999887322112222789999999999966543 7
Q ss_pred HHHHHHHHHHhccCCeEEEEEec
Q psy1107 168 FSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 168 ~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
...++.++.++|||||.|++.+.
T Consensus 177 ~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 177 YRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhCCCCcEEEEEec
Confidence 88999999999999999999773
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-17 Score=125.26 Aligned_cols=103 Identities=18% Similarity=0.293 Sum_probs=91.2
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..++. +++++|+|+.+++.++++.. ..++.+..+|+.+ .+++.++||+|++.
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~----~~~~~~~fD~v~~~ 115 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIED----IAIEPDAYNVVLSS 115 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGG----CCCCTTCEEEEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhh----CCCCCCCeEEEEEc
Confidence 46789999999999999999988754 99999999999999998765 4689999999876 45667799999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+++|+ .+...+++.+.++|+|||.+++..
T Consensus 116 ~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 116 LALHYI--ASFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp SCGGGC--SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhh--hhHHHHHHHHHHHcCCCcEEEEEe
Confidence 999999 478899999999999999999975
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=124.91 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=94.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||+|||+|.++..++..++ +++++|+|+.+++.++.+....+ .++.+...|+.. .+++.++||+
T Consensus 17 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~ 90 (239)
T 1xxl_A 17 AECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES----LPFPDDSFDI 90 (239)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB----CCSCTTCEEE
T ss_pred hCcCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccccc----CCCCCCcEEE
Confidence 4456788999999999999999998774 99999999999999988755433 578999999876 4566779999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
|++..+++|++ +...++.++.++|+|||.+++.+...
T Consensus 91 v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 91 ITCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp EEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred EEECCchhhcc--CHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 99999999995 78899999999999999999987544
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-17 Score=122.44 Aligned_cols=110 Identities=20% Similarity=0.271 Sum_probs=92.8
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||+|||+|.++..++..++ +++++|+|+.+++.++++....+.++.+.++|+.+ .+++.++||+|+
T Consensus 35 ~~~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~v~ 108 (227)
T 1ve3_A 35 YMKKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK----LSFEDKTFDYVI 108 (227)
T ss_dssp SCCSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS----CCSCTTCEEEEE
T ss_pred hcCCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc----CCCCCCcEEEEE
Confidence 344578999999999999999988875 99999999999999998765545689999999876 345567899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+..++++.+..+...++..+.++|+|||.+++.+..
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 109 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp EESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 998866665567889999999999999999998754
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-17 Score=125.17 Aligned_cols=103 Identities=16% Similarity=0.295 Sum_probs=89.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++. +..+++|+|+|+.+++.++.+. ++.+.+.|+.+ .++++++||+|++
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~d~~~----~~~~~~~fD~v~~ 100 (261)
T 3ege_A 32 LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP-----QVEWFTGYAEN----LALPDKSVDGVIS 100 (261)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT-----TEEEECCCTTS----CCSCTTCBSEEEE
T ss_pred CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc-----CCEEEECchhh----CCCCCCCEeEEEE
Confidence 46788999999999999999987 4479999999999998887653 79999999876 4566779999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
..+++|+ .++..+++++.++|| ||.+++.++...
T Consensus 101 ~~~l~~~--~~~~~~l~~~~~~Lk-gG~~~~~~~~~~ 134 (261)
T 3ege_A 101 ILAIHHF--SHLEKSFQEMQRIIR-DGTIVLLTFDIR 134 (261)
T ss_dssp ESCGGGC--SSHHHHHHHHHHHBC-SSCEEEEEECGG
T ss_pred cchHhhc--cCHHHHHHHHHHHhC-CcEEEEEEcCCc
Confidence 9999999 488899999999999 998888876543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.9e-17 Score=127.19 Aligned_cols=110 Identities=16% Similarity=0.022 Sum_probs=93.8
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|.++..++.... .+++++|+|+.+++.++++....+ .++.+.++|+.+ .++++++||+
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~fD~ 153 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE----IPCEDNSYDF 153 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS----CSSCTTCEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc----CCCCCCCEeE
Confidence 446788999999999999999988742 599999999999999988754333 579999999877 4566779999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
|++..+++|++ +...++.++.++|||||.|++.+...
T Consensus 154 v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 154 IWSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMK 190 (297)
T ss_dssp EEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEecchhhhcC--CHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 99999999996 58899999999999999999987543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=123.86 Aligned_cols=104 Identities=18% Similarity=0.144 Sum_probs=90.6
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++...|..+++++|+|+.+++.++.+ ..++.+...|+.+ .+ +.++||+|++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~----~~~~~~~~~d~~~----~~-~~~~fD~v~~ 101 (259)
T 2p35_A 31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR----LPNTNFGKADLAT----WK-PAQKADLLYA 101 (259)
T ss_dssp CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH----STTSEEEECCTTT----CC-CSSCEEEEEE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----CCCcEEEECChhh----cC-ccCCcCEEEE
Confidence 4567899999999999999999887767999999999999999876 2478999999876 23 4668999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
..+++|++ +...++.++.++|+|||.+++....
T Consensus 102 ~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 102 NAVFQWVP--DHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp ESCGGGST--THHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred eCchhhCC--CHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 99999994 7889999999999999999998754
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-17 Score=119.61 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=93.6
Q ss_pred HHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCC
Q psy1107 70 FHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 70 ~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
+..++....++ +|||+|||+|.++..++..+ .+++++|+|+.+++.++++....+.++.+.+.|+.+ .+++.+
T Consensus 21 l~~~~~~~~~~-~vLdiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~~~ 93 (202)
T 2kw5_A 21 LVSVANQIPQG-KILCLAEGEGRNACFLASLG--YEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLAD----FDIVAD 93 (202)
T ss_dssp HHHHHHHSCSS-EEEECCCSCTHHHHHHHTTT--CEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTT----BSCCTT
T ss_pred HHHHHHhCCCC-CEEEECCCCCHhHHHHHhCC--CeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhh----cCCCcC
Confidence 33343344556 99999999999999998764 599999999999999998765444578899999877 345667
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
+||+|++. +.|+++.+...++..+.++|+|||.+++..+.....
T Consensus 94 ~fD~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 137 (202)
T 2kw5_A 94 AWEGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQL 137 (202)
T ss_dssp TCSEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTG
T ss_pred CccEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence 89999985 345666788999999999999999999988765443
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=123.68 Aligned_cols=106 Identities=17% Similarity=0.130 Sum_probs=90.4
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|..+..++... ..+++++|+|+.+++.++++....+ .++.+.+.|+.+ .++ .++||+
T Consensus 33 ~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~----~~~-~~~fD~ 106 (256)
T 1nkv_A 33 RMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG----YVA-NEKCDV 106 (256)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT----CCC-SSCEEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh----CCc-CCCCCE
Confidence 35677899999999999999998775 3599999999999999998765433 479999999877 233 568999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++..+++|++ +...+++++.++|||||.+++.+
T Consensus 107 V~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 107 AACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp EEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred EEECCChHhcC--CHHHHHHHHHHHcCCCeEEEEec
Confidence 99999999985 67889999999999999999976
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-17 Score=127.11 Aligned_cols=105 Identities=15% Similarity=0.279 Sum_probs=91.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++.+....+.++.+.++|+.+. .. .++||+|++.
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~-~~~fD~i~~~ 191 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLG--YDVTSWDHNENSIAFLNETKEKENLNISTALYDINAA----NI-QENYDFIVST 191 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGC----CC-CSCEEEEEEC
T ss_pred cCCCcEEEECCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccc----cc-cCCccEEEEc
Confidence 378899999999999999999875 5999999999999999988665555899999998762 23 5689999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+++|+++.....++..+.++|+|||.+++..
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 192 VVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp SSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999988888899999999999999977755
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.7e-17 Score=132.52 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=94.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCccc---------CCCceEEeccCCCcccc--c
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYD---------ASKMNVFPCDVTEDDIL--N 144 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~---------~~~i~~~~~d~~~~~~~--~ 144 (218)
..++.+|||+|||+|.++..++... +..+|+++|+|+.+++.++++.... ..++.+++.|+.+.... .
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 4577899999999999999998774 6679999999999999999885422 26899999999873111 1
Q ss_pred CCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 145 QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
++++++||+|++..++++++ ++..++.++.++|||||.|++.+..
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~ 205 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLST--NKLALFKEIHRVLRDGGELYFSDVY 205 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcCC--CHHHHHHHHHHHcCCCCEEEEEEec
Confidence 66778999999999999985 6889999999999999999998744
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.3e-17 Score=126.37 Aligned_cols=109 Identities=19% Similarity=0.320 Sum_probs=91.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++....+ .++.++++|+.+. ..++.++||+|+
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~~fD~v~ 141 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAERG--HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDV---ASHLETPVDLIL 141 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGT---GGGCSSCEEEEE
T ss_pred CCCCEEEEeCCcchHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHh---hhhcCCCceEEE
Confidence 346799999999999999998874 599999999999999998765443 4789999998772 224567999999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+..+++|++ +...++..+.++|+|||.+++..+...
T Consensus 142 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (285)
T 4htf_A 142 FHAVLEWVA--DPRSVLQTLWSVLRPGGVLSLMFYNAH 177 (285)
T ss_dssp EESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEEBHH
T ss_pred ECchhhccc--CHHHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 999999995 678999999999999999999876543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.7e-17 Score=127.31 Aligned_cols=113 Identities=15% Similarity=0.219 Sum_probs=89.4
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----cCCCceEEeccCCCcccccCCCCCc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----DASKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
...++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.++++... ...++.+...|+....- ..++.++
T Consensus 54 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~ 130 (293)
T 3thr_A 54 RQHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK-DVPAGDG 130 (293)
T ss_dssp HHTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH-HSCCTTC
T ss_pred cccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc-ccccCCC
Confidence 34567899999999999999999876 4999999999999999875311 11467778888766210 0056679
Q ss_pred ccEEEec-hhhcCCCc-----chHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 151 VDIATLI-FVLSAIHP-----NKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 151 ~D~i~~~-~~l~~~~~-----~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
||+|++. .+++|+++ ++...+++.+.++|||||.+++....
T Consensus 131 fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 131 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9999998 79999975 45899999999999999999987643
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.2e-17 Score=125.23 Aligned_cols=109 Identities=18% Similarity=0.242 Sum_probs=92.9
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++... ..+++++|+|+.+++.++.+....+ .++.+..+|+.+ .++++++||+|
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~fD~v 133 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD----LPFEDASFDAV 133 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS----CCSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc----CCCCCCCccEE
Confidence 4577899999999999999998765 3699999999999999988755433 469999999877 45667799999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
++..+++|++ +...++.++.++|+|||.+++.++..
T Consensus 134 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 134 WALESLHHMP--DRGRALREMARVLRPGGTVAIADFVL 169 (273)
T ss_dssp EEESCTTTSS--CHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred EEechhhhCC--CHHHHHHHHHHHcCCCeEEEEEEeec
Confidence 9999999995 67899999999999999999987543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.6e-17 Score=123.37 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=88.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||||||+|..+..+++..+ .+++++|+|+.+++.|+++....+.++.++..|+... ...+++++||.|++
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~--~~~~~~~~FD~i~~ 134 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV--APTLPDGHFDGILY 134 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH--GGGSCTTCEEEEEE
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhh--cccccccCCceEEE
Confidence 46788999999999999999988766 4899999999999999998776667788888876542 24567778999975
Q ss_pred -----chhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 -----IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 -----~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
...+.|. .+...+++++.++|||||.|++..
T Consensus 135 D~~~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 135 DTYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred eeeecccchhhh--cchhhhhhhhhheeCCCCEEEEEe
Confidence 3344455 478899999999999999998754
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.69 E-value=9.6e-17 Score=123.70 Aligned_cols=104 Identities=17% Similarity=0.270 Sum_probs=86.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++....+.++.+.++|+.+ .+.+ ++||+|++.
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~----~~~~-~~fD~v~~~ 112 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE----IAFK-NEFDAVTMF 112 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG----CCCC-SCEEEEEEC
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh----cccC-CCccEEEEc
Confidence 456899999999999999998875 599999999999999998765555578999999876 2333 479999986
Q ss_pred h-hhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 158 F-VLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 158 ~-~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
. .++++++++...++..+.++|+|||.+++.
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 113 FSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp SSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4 556666677889999999999999998874
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-17 Score=128.44 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=86.8
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC-------CceEEeccCCCcc----cccCC
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS-------KMNVFPCDVTEDD----ILNQV 146 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~-------~i~~~~~d~~~~~----~~~~~ 146 (218)
.++.+|||||||+|..+..++..+ ..+|+|+|+|+.+++.|+.+....+. ++.|.+.|+.... +...+
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 346899999999998777666543 35899999999999999987543322 2567777774432 12235
Q ss_pred CCCcccEEEechhhcCC-CcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 147 PHNSVDIATLIFVLSAI-HPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~-~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
+.++||+|+|.++++++ .+++...+++.+.++|||||.|++.....
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 66799999999999875 33467899999999999999999877543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=126.09 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=94.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|.++..++...+ .+++++|+|+.+++.++++....+ .++.+..+|+.+ . .++||+
T Consensus 69 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~---~~~fD~ 140 (302)
T 3hem_A 69 NLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE----F---DEPVDR 140 (302)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG----C---CCCCSE
T ss_pred CCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH----c---CCCccE
Confidence 346778999999999999999998754 699999999999999998865443 479999999865 1 568999
Q ss_pred EEechhhcCCC-------cchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 154 ATLIFVLSAIH-------PNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 154 i~~~~~l~~~~-------~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
|++..+++|++ .++...++..+.++|||||.+++.++...+.
T Consensus 141 v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 189 (302)
T 3hem_A 141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDK 189 (302)
T ss_dssp EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCH
T ss_pred EEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCc
Confidence 99999999994 3567899999999999999999988665443
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=117.96 Aligned_cols=113 Identities=14% Similarity=0.099 Sum_probs=84.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|+++....+ .++.+++.+.... ..+..++||+|
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l---~~~~~~~fD~v 93 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENL---DHYVREPIRAA 93 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGG---GGTCCSCEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHH---HhhccCCcCEE
Confidence 3457889999999999999999987 3699999999999999998866544 5788888665441 22345689999
Q ss_pred Eech-hhcCC------CcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 155 TLIF-VLSAI------HPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 155 ~~~~-~l~~~------~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
++.. .+.+. .++....++..+.++|||||.+++..+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 139 (185)
T 3mti_A 94 IFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGH 139 (185)
T ss_dssp EEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC---
T ss_pred EEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCC
Confidence 8763 22210 224566888999999999999999887543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.5e-17 Score=127.33 Aligned_cols=115 Identities=15% Similarity=0.068 Sum_probs=94.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHh-hcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLL-SWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~-~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....++.+|||+|||+|..+..++ ...+..+++++|+|+.+++.++.+....+ .++.++++|+.+ .+++ ++|
T Consensus 114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~-~~f 188 (305)
T 3ocj_A 114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK----LDTR-EGY 188 (305)
T ss_dssp HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG----CCCC-SCE
T ss_pred hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc----CCcc-CCe
Confidence 335678899999999999999986 45677899999999999999998865544 348999999877 3445 689
Q ss_pred cEEEechhhcCCC-cchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 152 DIATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 152 D~i~~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
|+|++..+++|++ +.....++..+.++|+|||.+++.++....
T Consensus 189 D~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 232 (305)
T 3ocj_A 189 DLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPP 232 (305)
T ss_dssp EEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCT
T ss_pred EEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCC
Confidence 9999999999986 344456899999999999999998866543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=122.21 Aligned_cols=106 Identities=9% Similarity=0.058 Sum_probs=83.2
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc-ccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI-LNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.++++.... ++..++.+... ......++||+|
T Consensus 42 ~l~~g~~VLDlGcGtG~~a~~La~~g--~~V~gvD~S~~ml~~Ar~~~~~~-----~v~~~~~~~~~~~~~~~~~~fD~V 114 (261)
T 3iv6_A 42 NIVPGSTVAVIGASTRFLIEKALERG--ASVTVFDFSQRMCDDLAEALADR-----CVTIDLLDITAEIPKELAGHFDFV 114 (261)
T ss_dssp TCCTTCEEEEECTTCHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTSSS-----CCEEEECCTTSCCCGGGTTCCSEE
T ss_pred CCCCcCEEEEEeCcchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhc-----cceeeeeecccccccccCCCccEE
Confidence 45677899999999999999999876 59999999999999999886543 23333333111 001113589999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++..+++|+++++...++..+.++| |||.+++..
T Consensus 115 v~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 115 LNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred EEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 9999999998778889999999999 999999864
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=124.33 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=91.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCC-CCCcccE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQV-PHNSVDI 153 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~-~~~~~D~ 153 (218)
..++.+|||+|||+|.++..++..+ ..+++++|+|+.+++.++.+....+ .++.+.++|+.+ .++ +.++||+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~fD~ 136 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG----RHMDLGKEFDV 136 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT----SCCCCSSCEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccc----cccCCCCCcCE
Confidence 4678899999999999999888764 3599999999999999998755433 368999999877 334 4668999
Q ss_pred EEechhhcC--CCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 154 ATLIFVLSA--IHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 154 i~~~~~l~~--~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
|++..++++ .+..+...++..+.++|+|||.+++.....
T Consensus 137 v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 137 ISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp EEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 999999887 445678899999999999999999987543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8e-17 Score=123.16 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=88.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++...+ .+++++|+|+.+++.|+++....+.++.++++|+.+. ..++++++||+|++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~fD~V~~ 134 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV--APTLPDGHFDGILY 134 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH--GGGSCTTCEEEEEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHh--hcccCCCceEEEEE
Confidence 35678999999999999999976554 4899999999999999998765556789999988762 12567789999998
Q ss_pred -chhh--cCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 157 -IFVL--SAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 157 -~~~l--~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+.+ +.........++.++.++|||||.|++.++.
T Consensus 135 d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 135 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred CCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 4432 2222345667899999999999999987643
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-16 Score=127.51 Aligned_cols=112 Identities=10% Similarity=0.196 Sum_probs=95.4
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.+..+|||||||+|.++..+++.+|..+++++|+ +.+++.++++....+ .++.+..+|+.+.. .+++ ++||+|+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~p-~~~D~v~ 253 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRD--VPFP-TGFDAVW 253 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSS--CCCC-CCCSEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccC--CCCC-CCcCEEE
Confidence 4668999999999999999999999899999999 999999998755433 47999999997731 0345 5899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+..+++++++++...+++++++.|+|||.|++.+....
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (363)
T 3dp7_A 254 MSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWD 291 (363)
T ss_dssp EESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred EechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccC
Confidence 99999999877778999999999999999999885443
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=126.89 Aligned_cols=110 Identities=12% Similarity=0.099 Sum_probs=93.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++... ..+++++|+++.+++.++++....+ .++.+..+|+.+ .+++.++||+|
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~V 189 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLD----TPFDKGAVTAS 189 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS----CCCCTTCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhc----CCCCCCCEeEE
Confidence 4577899999999999999998873 3599999999999999998765444 479999999977 45667799999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
++..+++|++ ...++..+.++|||||.+++.+....+
T Consensus 190 ~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~ 226 (312)
T 3vc1_A 190 WNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNP 226 (312)
T ss_dssp EEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred EECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccc
Confidence 9999999993 889999999999999999998754443
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=123.93 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=92.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++...+ .+++++|+|+.+++.++++....+ .++.+..+|+.+ ++ ++||+|
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~-~~fD~v 133 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ------FD-EPVDRI 133 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG------CC-CCCSEE
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh------CC-CCeeEE
Confidence 45778999999999999999985543 499999999999999998754333 478899998854 22 689999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
++..+++|+++.+...++.++.++|||||.+++.+.....
T Consensus 134 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 173 (287)
T 1kpg_A 134 VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLH 173 (287)
T ss_dssp EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECC
T ss_pred EEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 9999999998778899999999999999999998765443
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-16 Score=117.90 Aligned_cols=106 Identities=19% Similarity=0.330 Sum_probs=90.5
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||+|||+|.++..++..+. .+++++|+|+.+++.++.+... .++.+.+.|+.. .+++.++||+|+
T Consensus 40 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~d~~~----~~~~~~~fD~v~ 112 (243)
T 3bkw_A 40 PEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPD--TGITYERADLDK----LHLPQDSFDLAY 112 (243)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCS--SSEEEEECCGGG----CCCCTTCEEEEE
T ss_pred cccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhccc--CCceEEEcChhh----ccCCCCCceEEE
Confidence 345678999999999999999988753 2899999999999999988653 368899998876 345667899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+..+++|++ +...+++.+.++|+|||.+++...
T Consensus 113 ~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 113 SSLALHYVE--DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp EESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Eeccccccc--hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 999999995 788999999999999999999763
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-16 Score=119.85 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=89.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++.+....+.++.+.++|+.+ .+++ ++||+|++.
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~-~~fD~v~~~ 108 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN----LNIN-RKFDLITCC 108 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG----CCCS-CCEEEEEEC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCC--CcEEEEECCHHHHHHHHHHHhhcCCCeEEEeccccc----CCcc-CCceEEEEc
Confidence 367899999999999999998875 489999999999999998765444478999998876 3344 689999999
Q ss_pred h-hhcCCC-cchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 158 F-VLSAIH-PNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 158 ~-~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
. +++|++ +.+...++..+.++|+|||.+++...
T Consensus 109 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 109 LDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 8 999995 36788999999999999999998543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-16 Score=119.79 Aligned_cols=104 Identities=13% Similarity=0.251 Sum_probs=87.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..++ +++++|+|+.+++.++++. .++.+...|+.+ .+. .++||+|+|.
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~----~~~~~~~~d~~~----~~~-~~~~D~v~~~ 107 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL----PDATLHQGDMRD----FRL-GRKFSAVVSM 107 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC----TTCEEEECCTTT----CCC-SSCEEEEEEC
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC----CCCEEEECCHHH----ccc-CCCCcEEEEc
Confidence 5678999999999999999998875 8999999999999998764 368899999876 233 4589999964
Q ss_pred h-hhcCCC-cchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 158 F-VLSAIH-PNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 158 ~-~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
. +++|++ +++...+++.+.++|+|||.+++.++..
T Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 108 FSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred CchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 4 888885 3678899999999999999999976543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.4e-16 Score=121.63 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=93.6
Q ss_pred CCCcEEEEecCCC---chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc-------cCCC
Q psy1107 78 VGEGVLLEVGCGV---GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL-------NQVP 147 (218)
Q Consensus 78 ~~~~~vLDiGcG~---G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-------~~~~ 147 (218)
.+..+|||||||+ |..+..+....|..+|+++|+|+.+++.++++... ..++.++.+|+.+.... ..++
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-DPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-CTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-CCCeEEEEeeCCCchhhhccchhhccCC
Confidence 3457999999999 98877666667778999999999999999987532 35799999999764211 1233
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
-.+||+|++..+++|+++++...+++++.++|+|||.|++.++..
T Consensus 155 ~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 347999999999999986678999999999999999999988765
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=114.46 Aligned_cols=103 Identities=21% Similarity=0.354 Sum_probs=88.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+ .+++++|+++.+++.++++ ..++.+...| .+++.++||+|++
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----~~~v~~~~~d-------~~~~~~~~D~v~~ 81 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK----FDSVITLSDP-------KEIPDNSVDFILF 81 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH----CTTSEEESSG-------GGSCTTCEEEEEE
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh----CCCcEEEeCC-------CCCCCCceEEEEE
Confidence 4577899999999999999999877 3999999999999999987 3478888887 2345678999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
..+++|++ +...+++++.++|+|||.+++.++....
T Consensus 82 ~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 117 (170)
T 3i9f_A 82 ANSFHDMD--DKQHVISEVKRILKDDGRVIIIDWRKEN 117 (170)
T ss_dssp ESCSTTCS--CHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred ccchhccc--CHHHHHHHHHHhcCCCCEEEEEEcCccc
Confidence 99999994 7889999999999999999998866543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-16 Score=121.73 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=89.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++. +..+++++|+|+.+++.++.+. .++.+..+|+.. .++ .++||+|++
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~----~~~-~~~fD~v~~ 123 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY----PHLHFDVADARN----FRV-DKPLDAVFS 123 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC----TTSCEEECCTTT----CCC-SSCEEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC----CCCEEEECChhh----CCc-CCCcCEEEE
Confidence 45678999999999999999988 4579999999999999998764 478899999876 233 458999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
..++++++ ++..++.++.++|+|||.+++......
T Consensus 124 ~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 124 NAMLHWVK--EPEAAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp ESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred cchhhhCc--CHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 99999995 788999999999999999999776543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.1e-16 Score=117.05 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=87.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|.++..+ .. +++++|+|+.+++.++++. .++.+.+.|+.+ .+++.++||+|++
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~----~~~~~~~fD~v~~ 101 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEA----LPFPGESFDVVLL 101 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTS----CCSCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEccccc----CCCCCCcEEEEEE
Confidence 37789999999999998777 24 8999999999999999875 468888888876 4566778999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
..+++|++ +...++.++.++|+|||.+++.......
T Consensus 102 ~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 102 FTTLEFVE--DVERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp ESCTTTCS--CHHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred cChhhhcC--CHHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 99999995 7889999999999999999998866543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-16 Score=124.10 Aligned_cols=111 Identities=14% Similarity=0.216 Sum_probs=92.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC----CCceEEeccCCCcccccCCCCCcccE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA----SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
.++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.++++....+ .++.++++|+.+ .++ .++||+
T Consensus 81 ~~~~~vLDlGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~----~~~-~~~fD~ 153 (299)
T 3g2m_A 81 PVSGPVLELAAGMGRLTFPFLDLG--WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA----FAL-DKRFGT 153 (299)
T ss_dssp CCCSCEEEETCTTTTTHHHHHTTT--CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB----CCC-SCCEEE
T ss_pred CCCCcEEEEeccCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc----CCc-CCCcCE
Confidence 344599999999999999999875 589999999999999998866544 579999999987 333 468998
Q ss_pred EEec-hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 154 ATLI-FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 154 i~~~-~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
|++. .+++++++++...++..+.++|+|||.|++..+.....
T Consensus 154 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 196 (299)
T 3g2m_A 154 VVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAA 196 (299)
T ss_dssp EEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred EEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence 8865 56777776778999999999999999999988665543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=114.00 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=88.5
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++..+|..+++++|+|+.+++.++++....+ .++.+...|+.+. ....++||+|
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~D~i 112 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG----LDDLPDPDRV 112 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT----CTTSCCCSEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhh----hhcCCCCCEE
Confidence 4567789999999999999999998887899999999999999998865444 5789999988652 1122579999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
++..+++ +...+++.+.++|+|||.+++.....
T Consensus 113 ~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~ 145 (204)
T 3e05_A 113 FIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL 145 (204)
T ss_dssp EESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH
T ss_pred EECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 9876543 57789999999999999999986543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.2e-16 Score=123.67 Aligned_cols=110 Identities=13% Similarity=0.075 Sum_probs=93.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++... ..+++++|+|+.+++.++++....+ .++.+...|+.+ . + ++||+|
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~--~-~~fD~v 159 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED----F--A-EPVDRI 159 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG----C--C-CCCSEE
T ss_pred CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH----C--C-CCcCEE
Confidence 4567899999999999999998874 3599999999999999998755433 468899998855 1 2 589999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
++..+++|+++.+...++.++.++|+|||.+++.+.....
T Consensus 160 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 160 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred EEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 9999999998778999999999999999999998866544
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=117.35 Aligned_cols=106 Identities=13% Similarity=0.094 Sum_probs=84.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|..+..++...+..+|+++|+|+.+++.++++....+ .++.++++|+.+.... ....++||+|++
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~V~~ 147 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-KDVRESYDIVTA 147 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-TTTTTCEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc-ccccCCccEEEE
Confidence 46789999999999999999876677799999999999999998765544 4699999988652110 111458999998
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.. + .+...++..+.++|+|||.+++...
T Consensus 148 ~~----~--~~~~~~l~~~~~~LkpgG~l~~~~g 175 (240)
T 1xdz_A 148 RA----V--ARLSVLSELCLPLVKKNGLFVALKA 175 (240)
T ss_dssp EC----C--SCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred ec----c--CCHHHHHHHHHHhcCCCCEEEEEeC
Confidence 65 2 3678899999999999999998753
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=113.98 Aligned_cols=98 Identities=20% Similarity=0.307 Sum_probs=84.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++.. +++|+|+.+++.++.+ ++.+..+|+.. .+++.++||+|++.
T Consensus 46 ~~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~------~~~~~~~d~~~----~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 46 LPEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR------GVFVLKGTAEN----LPLKDESFDFALMV 109 (219)
T ss_dssp CCSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT------TCEEEECBTTB----CCSCTTCEEEEEEE
T ss_pred CCCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc------CCEEEEccccc----CCCCCCCeeEEEEc
Confidence 34889999999999999888653 9999999999999986 57888888866 34566789999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
.++++++ +...++..+.++|+|||.+++......
T Consensus 110 ~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~ 143 (219)
T 1vlm_A 110 TTICFVD--DPERALKEAYRILKKGGYLIVGIVDRE 143 (219)
T ss_dssp SCGGGSS--CHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred chHhhcc--CHHHHHHHHHHHcCCCcEEEEEEeCCc
Confidence 9999994 678999999999999999999876543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=112.22 Aligned_cols=102 Identities=14% Similarity=0.032 Sum_probs=84.3
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+|||+|||+|..+..++...|..+++++|+|+.+++.++.+....+ .++.+.++|+.+. . +.++||+|++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~-~~~~~D~i~~~ 139 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF----P-SEPPFDGVISR 139 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS----C-CCSCEEEEECS
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhC----C-ccCCcCEEEEe
Confidence 4789999999999999999988777899999999999999998765444 3589999998762 1 34589999975
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
. + .+...++..+.++|+|||.+++....
T Consensus 140 ~----~--~~~~~~l~~~~~~L~~gG~l~~~~~~ 167 (207)
T 1jsx_A 140 A----F--ASLNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp C----S--SSHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred c----c--CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 3 2 35678999999999999999997644
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.2e-16 Score=118.36 Aligned_cols=107 Identities=19% Similarity=0.340 Sum_probs=88.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||+|.++..++.. .+++++|+|+.+++.++++....+.++.+.+.|+.+ .+++ ++||+|
T Consensus 29 ~~~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~-~~fD~v 100 (243)
T 3d2l_A 29 EQVEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE----LELP-EPVDAI 100 (243)
T ss_dssp HHSCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG----CCCS-SCEEEE
T ss_pred HHcCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh----cCCC-CCcCEE
Confidence 33456789999999999999999876 599999999999999998765444678999999876 2333 589999
Q ss_pred Eech-hhcCCC-cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIF-VLSAIH-PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~-~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++.. +++|+. +.+...+++.+.++|+|||.+++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 101 TILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9986 888884 4678899999999999999999854
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.2e-16 Score=116.01 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=86.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++ .++.+...|+.+.......+..+||+|++
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~ 122 (227)
T 3e8s_A 50 GRQPERVLDLGCGEGWLLRALADRG--IEAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEAKVPVGKDYDLICA 122 (227)
T ss_dssp HTCCSEEEEETCTTCHHHHHHHTTT--CEEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCCCEEEEEE
T ss_pred cCCCCEEEEeCCCCCHHHHHHHHCC--CEEEEEcCCHHHHHHHHHh-----cccccchhhHHhhcccccccCCCccEEEE
Confidence 3456899999999999999998874 5999999999999999987 45677777766532112233446999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
..+++ . .+...+++.+.++|+|||.+++.+.....
T Consensus 123 ~~~l~-~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 157 (227)
T 3e8s_A 123 NFALL-H--QDIIELLSAMRTLLVPGGALVIQTLHPWS 157 (227)
T ss_dssp ESCCC-S--SCCHHHHHHHHHTEEEEEEEEEEECCTTT
T ss_pred Cchhh-h--hhHHHHHHHHHHHhCCCeEEEEEecCccc
Confidence 99888 3 46778999999999999999998865543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.6e-15 Score=115.38 Aligned_cols=106 Identities=16% Similarity=0.094 Sum_probs=86.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||||||+|.++..++...+.++|+++|+|+.+++.|+++....+ .++.+.++|+.+ . +.++||+
T Consensus 118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~----l--~d~~FDv 191 (298)
T 3fpf_A 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV----I--DGLEFDV 191 (298)
T ss_dssp TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG----G--GGCCCSE
T ss_pred cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh----C--CCCCcCE
Confidence 56678999999999999877555444456899999999999999999865433 689999999866 2 2568999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|++... . .+...+++.+.++|||||.|++....
T Consensus 192 V~~~a~---~--~d~~~~l~el~r~LkPGG~Lvv~~~~ 224 (298)
T 3fpf_A 192 LMVAAL---A--EPKRRVFRNIHRYVDTETRIIYRTYT 224 (298)
T ss_dssp EEECTT---C--SCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred EEECCC---c--cCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence 997543 2 47789999999999999999998743
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=6.1e-16 Score=121.73 Aligned_cols=111 Identities=18% Similarity=0.243 Sum_probs=81.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC-----------------------------
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS----------------------------- 128 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~----------------------------- 128 (218)
.++.+|||||||+|.....++.. +..+|+|+|+|+.+++.++++....+.
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 36789999999999955444432 235999999999999998874321100
Q ss_pred --CceEEeccCCCc-ccc-cCCCCCcccEEEechhhcCCCcc--hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 129 --KMNVFPCDVTED-DIL-NQVPHNSVDIATLIFVLSAIHPN--KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 129 --~i~~~~~d~~~~-~~~-~~~~~~~~D~i~~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+.++.+|+.+. .+. ..++.++||+|++..++++++++ ++..++.++.++|||||.|++..
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 134566687662 111 12445679999999999996644 78899999999999999999974
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-16 Score=120.15 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=87.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.+..+|||||||+|.++..++..+|...++|+|+|+.+++.++.++...+ .++.++++|+.+. +...++.+++|.|++
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~-l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEV-LHKMIPDNSLRMVQL 111 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHH-HHHHSCTTCEEEEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHH-HHHHcCCCChheEEE
Confidence 35679999999999999999999888899999999999999998865444 5799999998652 011256779999998
Q ss_pred chhhcCCCcchH------HHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPNKF------STVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~~~------~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+...+...... ..++..+.++|||||.|++..
T Consensus 112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 754333221111 258999999999999999976
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.1e-16 Score=116.53 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=86.4
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||||||+|.++..++...|..+++|+|+|+.+++.|+.++...+ .++.++++|+.+ +...++.++||.|++
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~--l~~~~~~~~~d~v~~ 114 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT--LTDVFEPGEVKRVYL 114 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG--HHHHCCTTSCCEEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH--HHhhcCcCCcCEEEE
Confidence 45679999999999999999998888899999999999999998765444 579999999876 212256678999987
Q ss_pred chhhcCCCcc------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPN------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+...+.... ....++..+.++|+|||.|++..
T Consensus 115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 6533222100 13578999999999999999875
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-16 Score=123.24 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=93.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.+..+|||+|||+|..+..+++.+|..+++++|+ +.+++.++++....+ .++.+...|+.+ +++. +||+|+
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~p~-~~D~v~ 240 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-----PLPA-GAGGYV 240 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-----CCCC-SCSEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-----CCCC-CCcEEE
Confidence 3467999999999999999999888889999999 999999988754433 579999999863 2333 799999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+..++++++++....+++++++.|+|||.|++.+....+
T Consensus 241 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 279 (332)
T 3i53_A 241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD 279 (332)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred EehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence 999999998666789999999999999999998865443
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-17 Score=117.26 Aligned_cols=112 Identities=12% Similarity=0.151 Sum_probs=88.3
Q ss_pred HHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCc
Q psy1107 71 HEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 71 ~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
..+.....++.+|||+|||+|.++..++...|..+|+++|+|+.+++.+++++...+....+..+|... ..+.++
T Consensus 41 ~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~-----~~~~~~ 115 (200)
T 3fzg_A 41 TYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKES-----DVYKGT 115 (200)
T ss_dssp HHHHHHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHH-----HHTTSE
T ss_pred HHHHhhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccc-----cCCCCC
Confidence 333344577889999999999999999988888899999999999999999976655332333355533 245568
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
||+|++..++|++ ++....+..+.+.|+|||+++--+
T Consensus 116 ~DvVLa~k~LHlL--~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 116 YDVVFLLKMLPVL--KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp EEEEEEETCHHHH--HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred cChhhHhhHHHhh--hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999999 455566668999999999777654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=114.91 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=87.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|.++..++...|..+++|+|+|+.+++.|+.++...+ .++.++++|+.+ +...++.++||+|++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~D~i~~ 117 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD--LTDYFEDGEIDRLYL 117 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC--GGGTSCTTCCSEEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH--HHhhcCCCCCCEEEE
Confidence 45779999999999999999998888899999999999999998865444 589999999876 222356678999998
Q ss_pred chhhcCCCcc------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPN------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.....+.... ....++..+.++|+|||.+++..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 7543222100 23579999999999999999875
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-15 Score=110.89 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=89.6
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+ .+++++|+++.+++.++.+. .++.+...|+.+ .+++.++||+|++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~----~~~~~~~~d~~~----~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQG--HDVLGTDLDPILIDYAKQDF----PEARWVVGDLSV----DQISETDFDLIVS 113 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHC----TTSEEEECCTTT----SCCCCCCEEEEEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCC--CcEEEEcCCHHHHHHHHHhC----CCCcEEEccccc----CCCCCCceeEEEE
Confidence 4577899999999999999998874 59999999999999999865 358899999876 3455678999999
Q ss_pred c-hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 157 I-FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 157 ~-~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
. .+++++++++...++..+.++|+|||.+++....
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~ 149 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA 149 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 8 6888887677889999999999999999986643
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=111.45 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=85.8
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|.++..++...+..+++++|+++.+++.++++....+ .++ ++..|..+. .+...++||+
T Consensus 22 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~---~~~~~~~~D~ 97 (178)
T 3hm2_A 22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRA---FDDVPDNPDV 97 (178)
T ss_dssp CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGG---GGGCCSCCSE
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhh---hhccCCCCCE
Confidence 3456789999999999999999988777899999999999999998755443 267 777776541 1222258999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
|++..++++ ..+++.+.++|+|||.+++.......
T Consensus 98 i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~~~ 132 (178)
T 3hm2_A 98 IFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVTVES 132 (178)
T ss_dssp EEECC-TTC------TTHHHHHHHTCCTTCEEEEEECSHHH
T ss_pred EEECCcccH------HHHHHHHHHhcCCCCEEEEEeecccc
Confidence 999887765 46889999999999999998765444
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=113.59 Aligned_cols=114 Identities=15% Similarity=0.103 Sum_probs=89.1
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
...++.+|||+|||+|.++..++... +..+++++|+++.+++.++++....+ .++.+++.|+.+. .....++||
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~~fD 95 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNM---DKYIDCPVK 95 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGG---GGTCCSCEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH---hhhccCCce
Confidence 45677899999999999999998873 55699999999999999998865543 4789999998662 223446899
Q ss_pred EEEechhhcC-------CCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 153 IATLIFVLSA-------IHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 153 ~i~~~~~l~~-------~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
+|++...+.. ..+.+...++..+.++|+|||.+++..+..
T Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 9998764411 112355679999999999999999987654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.1e-16 Score=123.06 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=94.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.+..+|||+|||+|..+..+++..|..+++++|++ .+++.++++....+ .++.+..+|+.+ .+++. .||+|+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~-~~D~v~ 237 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFE----VDYGN-DYDLVL 237 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTT----SCCCS-CEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEeccccc----CCCCC-CCcEEE
Confidence 56789999999999999999998888899999999 99999988754333 369999999876 23444 499999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+..+++++++.+...+++++.++|+|||.+++.+....+
T Consensus 238 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 276 (335)
T 2r3s_A 238 LPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNS 276 (335)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCT
T ss_pred EcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Confidence 999999998777789999999999999999998866543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=112.76 Aligned_cols=110 Identities=12% Similarity=0.036 Sum_probs=87.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|.++..++..+ ..+++++|+|+.+++.++++....+ .++.+++.|+.+.. ..++.++||+|++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~fD~i~~ 119 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRG-AASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVV--AAGTTSPVDLVLA 119 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHH--HHCCSSCCSEEEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHH--hhccCCCccEEEE
Confidence 567899999999999999887754 3489999999999999999866544 57999999986621 1234568999999
Q ss_pred chhhcCCCcchHHHHHHHHHH--hccCCeEEEEEecC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFI--MLKSGGIILFRDYG 191 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~--~Lk~gG~li~~~~~ 191 (218)
..++++. ..+...++..+.+ +|+|||.+++....
T Consensus 120 ~~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 120 DPPYNVD-SADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp CCCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCCCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 7765543 2467889999998 99999999997644
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=120.54 Aligned_cols=110 Identities=14% Similarity=0.126 Sum_probs=81.3
Q ss_pred CCCcEEEEecCCCchhHHHH----hhcCCccEE--EEEeCCHHHHHHHHhCCccc--CCCceEE--eccCCCcccc----
Q psy1107 78 VGEGVLLEVGCGVGNFIFPL----LSWSKICYI--HACDISPRAVNFFKLNPLYD--ASKMNVF--PCDVTEDDIL---- 143 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~----~~~~~~~~v--~~~D~s~~~~~~~~~~~~~~--~~~i~~~--~~d~~~~~~~---- 143 (218)
.++.+|||||||+|..+..+ +..++...+ +++|+|+.+++.++++.... ..++.+. ..++.+ +.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~ 128 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSE--YQSRML 128 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHH--HHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhh--hhhhhc
Confidence 45679999999999765433 334455544 99999999999998875322 1345443 333322 11
Q ss_pred cCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 144 NQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 144 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.++++++||+|++..+++|++ ++..+++++.++|||||.|++....
T Consensus 129 ~~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 129 EKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp TTTCCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cccCCCceeEEEEeeeeeecC--CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 124567899999999999995 7889999999999999999997644
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-16 Score=121.56 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=85.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|..+..++...|..+++++|+|+.+++.++.+....+ .++.+.++|+.+. ++.++||+|++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-----~~~~~fD~Iv~ 182 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-----LAGQQFAMIVS 182 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-----GTTCCEEEEEE
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-----cccCCccEEEE
Confidence 56779999999999999999987777899999999999999998865544 4799999998662 23458999999
Q ss_pred ch-------------hhcCCCc----------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IF-------------VLSAIHP----------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~-------------~l~~~~~----------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+. +++|.|. +....++..+.++|+|||.+++..
T Consensus 183 npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 183 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 73 2323221 346788999999999999998864
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=122.34 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=94.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..+..+|||+|||+|.++..+++.+|..+++++|+ +.+++.++++....+ .++.+..+|+.. +++. .||+|
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-----~~p~-~~D~v 272 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-----TIPD-GADVY 272 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-----CCCS-SCSEE
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-----CCCC-CceEE
Confidence 35678999999999999999999998889999999 999999998754332 579999999873 3344 79999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
++..+++++++.....+++++.+.|+|||.|++.+....+
T Consensus 273 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 312 (369)
T 3gwz_A 273 LIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE 312 (369)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred EhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 9999999998666678999999999999999998855443
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=120.64 Aligned_cols=114 Identities=16% Similarity=0.189 Sum_probs=90.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc--------CCCceEEeccCCCcccccCCC--
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD--------ASKMNVFPCDVTEDDILNQVP-- 147 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~--------~~~i~~~~~d~~~~~~~~~~~-- 147 (218)
.++.+|||+|||+|.++..++.. +..+++++|+|+.+++.++.+.... ..++.+++.|+.......+++
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 46789999999999999998874 3469999999999999998864321 236899999998743222343
Q ss_pred CCcccEEEechhhcCC--CcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 148 HNSVDIATLIFVLSAI--HPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~--~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
.++||+|++..+++++ +..+...++.++.++|+|||.+++.....
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 3589999999999887 33567899999999999999999987654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=112.97 Aligned_cols=107 Identities=15% Similarity=0.097 Sum_probs=77.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|..+..++...+..+|+|+|+|+.+++.+.+.+... .++.++..|+.......++. ++||+|++
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~ 132 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQ 132 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEE
Confidence 35678999999999999999988765569999999998765444332211 36788888876632112333 68999998
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.. ..+.....++.++.++|||||.|++..
T Consensus 133 ~~----~~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 133 DI----AQKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CC----CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ec----cChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 62 122345566899999999999999973
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=123.13 Aligned_cols=110 Identities=13% Similarity=0.215 Sum_probs=92.7
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
+.+|||||||+|.++..+++.+|..+++++|+ +.+++.++++....+ .++.+..+|+.+.. .+..+.||+|++.
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~D~v~~~ 255 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDAR---NFEGGAADVVMLN 255 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGG---GGTTCCEEEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCc---ccCCCCccEEEEe
Confidence 78999999999999999999988889999999 889998887654333 46999999987732 1123469999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
.+++++++.+...+++++.+.|+|||.|++.+....
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (352)
T 3mcz_A 256 DCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMN 291 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCC
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 999999877788999999999999999999885443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=114.32 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=86.7
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||+||| +|.++..++... ..+++++|+++.+++.++.+....+.++.+.++|+.. ...++.++||+
T Consensus 51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~---~~~~~~~~fD~ 126 (230)
T 3evz_A 51 TFLRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGI---IKGVVEGTFDV 126 (230)
T ss_dssp TTCCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCS---STTTCCSCEEE
T ss_pred hhcCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchh---hhhcccCceeE
Confidence 345678899999999 999999998874 3699999999999999998876555589999999754 23455578999
Q ss_pred EEechhhcCCCc-----------------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHP-----------------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~-----------------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++...+.+.+. +....++..+.++|+|||.+++..
T Consensus 127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (230)
T 3evz_A 127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL 179 (230)
T ss_dssp EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 998755443321 124788999999999999999864
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=120.81 Aligned_cols=110 Identities=19% Similarity=0.300 Sum_probs=93.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..+..+|||+|||+|.++..+++.+|..+++++|+ +.+++.++++....+ .++.+..+|+.+ .+++. .|+|
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~--~D~v 260 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK----ESYPE--ADAV 260 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTT----SCCCC--CSEE
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCcccc----CCCCC--CCEE
Confidence 45678999999999999999999988889999999 999999998754332 459999999877 23433 4999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
++..++++++++....+++++.++|+|||.+++.++...
T Consensus 261 ~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 299 (359)
T 1x19_A 261 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 299 (359)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred EEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence 999999999866789999999999999999999885543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=114.50 Aligned_cols=112 Identities=12% Similarity=0.195 Sum_probs=82.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc-------ccCCCceEEeccCCCcccccCCCCC
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL-------YDASKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~-------~~~~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
..+..+|||||||+|.++..++...|...++|+|+|+.+++.|+.++. ....++.++++|+.+. +...++.+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~-l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH-LPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC-HHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh-hhhhCCCc
Confidence 345679999999999999999998888899999999999998876532 1225899999998651 11125677
Q ss_pred cccEEEechhhcCCCc-c-----hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHP-N-----KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~-~-----~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++|.|++.+...+... . ....++..+.++|+|||.|++..
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 8999987543222100 0 01468999999999999999865
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.4e-15 Score=110.72 Aligned_cols=109 Identities=16% Similarity=0.092 Sum_probs=88.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....|+.+|||+|||+|.++..++.. +|..+|+++|+++.+++.+++++... .++..+..|...... .+....++|+
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-~ni~~V~~d~~~p~~-~~~~~~~vDv 150 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-RNIFPILGDARFPEK-YRHLVEGVDG 150 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-TTEEEEESCTTCGGG-GTTTCCCEEE
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-cCeeEEEEeccCccc-cccccceEEE
Confidence 44678999999999999999999976 78889999999999999998876543 478888888876443 2344568999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++.. .+ +.+...++.++.+.|||||.+++..
T Consensus 151 Vf~d~--~~--~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 151 LYADV--AQ--PEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEECC--CC--TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEec--cC--ChhHHHHHHHHHHhccCCCEEEEEE
Confidence 88632 22 2577889999999999999999864
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=117.23 Aligned_cols=113 Identities=15% Similarity=0.171 Sum_probs=89.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHH------HHHHHHhCCcccC--CCceEEecc-CCCcccccCC
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPR------AVNFFKLNPLYDA--SKMNVFPCD-VTEDDILNQV 146 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~------~~~~~~~~~~~~~--~~i~~~~~d-~~~~~~~~~~ 146 (218)
..++.+|||||||+|.++..++.. +|..+++++|+|+. +++.++++....+ .++.+..+| +... ..++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~ 118 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD--LGPI 118 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC--CGGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc--cCCC
Confidence 467789999999999999999987 46679999999997 8888888754433 478899887 3321 1345
Q ss_pred CCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 147 PHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+.++||+|++..+++|++ +...+++.+..+++|||.+++.++...
T Consensus 119 ~~~~fD~v~~~~~l~~~~--~~~~~~~~~~~l~~~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 119 ADQHFDRVVLAHSLWYFA--SANALALLFKNMAAVCDHVDVAEWSMQ 163 (275)
T ss_dssp TTCCCSEEEEESCGGGSS--CHHHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred CCCCEEEEEEccchhhCC--CHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 667899999999999996 445577777788888999999886543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-15 Score=115.86 Aligned_cols=103 Identities=12% Similarity=0.145 Sum_probs=84.8
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++.. . .+...|+.+ .+++.++||+|++.
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~---~--~~~~~d~~~----~~~~~~~fD~v~~~ 121 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQERG--FEVVLVDPSKEMLEVAREKGV---K--NVVEAKAED----LPFPSGAFEAVLAL 121 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTT--CEEEEEESCHHHHHHHHHHTC---S--CEEECCTTS----CCSCTTCEEEEEEC
T ss_pred CCCCeEEEeCCCcCHHHHHHHHcC--CeEEEEeCCHHHHHHHHhhcC---C--CEEECcHHH----CCCCCCCEEEEEEc
Confidence 367899999999999999998875 589999999999999998754 1 277888876 34667789999998
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
.++.|+.+ +...+++++.++|+|||.+++.....
T Consensus 122 ~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 122 GDVLSYVE-NKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp SSHHHHCS-CHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred chhhhccc-cHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 76666543 48899999999999999999976543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=126.36 Aligned_cols=110 Identities=16% Similarity=0.318 Sum_probs=91.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCc------c-cCCCceEEeccCCCcccccCCCC
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPL------Y-DASKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~------~-~~~~i~~~~~d~~~~~~~~~~~~ 148 (218)
..++.+|||+|||+|.++..++..+ +..+|+|+|+|+.+++.|+++.. . ...++.+.++|+.+ .++..
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d----Lp~~d 794 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE----FDSRL 794 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS----CCTTS
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh----CCccc
Confidence 3478899999999999999999887 45699999999999999987321 1 12579999999987 45566
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
++||+|++..+++|+++.....++..+.++|||| .+++....
T Consensus 795 ~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 795 HDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp CSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred CCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 7899999999999998666667999999999999 77776643
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=108.63 Aligned_cols=106 Identities=11% Similarity=-0.010 Sum_probs=83.9
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-C-CceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-S-KMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~-~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|.++..++.. ..+|+++|+++.+++.|+++....+ . ++.++..|+.+. .....+||+
T Consensus 52 ~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~~~~~~~D~ 125 (204)
T 3njr_A 52 APRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA----LADLPLPEA 125 (204)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG----GTTSCCCSE
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh----cccCCCCCE
Confidence 3467789999999999999999887 4699999999999999998865444 3 799999998762 111237999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
|++...+ +.. ++..+.++|+|||.+++.......
T Consensus 126 v~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~~~~~ 159 (204)
T 3njr_A 126 VFIGGGG------SQA-LYDRLWEWLAPGTRIVANAVTLES 159 (204)
T ss_dssp EEECSCC------CHH-HHHHHHHHSCTTCEEEEEECSHHH
T ss_pred EEECCcc------cHH-HHHHHHHhcCCCcEEEEEecCccc
Confidence 9976522 345 899999999999999998755433
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-15 Score=121.13 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=91.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++..+|..+++++|+ +.+++.++++....+ .++.+..+|+.+ .++. .||+|
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~-~~D~v 252 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-----PLPV-TADVV 252 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-----CCSC-CEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-----cCCC-CCCEE
Confidence 45678999999999999999999888889999999 999999998754333 479999999865 2233 49999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
++..+++++++.....+++++.++|+|||.+++.+.
T Consensus 253 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 253 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999765667899999999999999999887
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.4e-15 Score=119.99 Aligned_cols=108 Identities=18% Similarity=0.200 Sum_probs=90.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.++.+....+.++.+++.|+.+ ...+.++||+|+++
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g--~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~----~~~~~~~fD~Ii~n 305 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMG--AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDE----ALTEEARFDIIVTN 305 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTT--CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT----TSCTTCCEEEEEEC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhh----ccccCCCeEEEEEC
Confidence 367899999999999999999875 599999999999999999876655568999999877 23334689999998
Q ss_pred hhhcC---CCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSA---IHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~---~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.++++ ...+....++..+.++|+|||.+++....
T Consensus 306 pp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 306 PPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp CCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred CchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 88776 33467789999999999999999997644
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8e-15 Score=112.94 Aligned_cols=105 Identities=15% Similarity=0.067 Sum_probs=85.4
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|..+..++...|..+|+++|+|+.+++.++++....+ .++.++++|+.+... .....++||+|++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~-~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAR-EAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTT-STTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhc-ccccCCCceEEEE
Confidence 46789999999999999999988888899999999999999999876555 469999999866211 1122368999998
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..+ .+...++..+.++|||||.+++..
T Consensus 158 ~a~------~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 158 RAV------APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp ESS------CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCc------CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 643 256789999999999999998866
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-15 Score=118.45 Aligned_cols=107 Identities=20% Similarity=0.182 Sum_probs=86.9
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc--cCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY--DASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..+..+|||||||+|..+..+++.+|..+++++|+ +.++. +++... ...++.+..+|+.+ +++ +||+|
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-----~~p--~~D~v 251 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-----EVP--HADVH 251 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-----CCC--CCSEE
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-----CCC--CCcEE
Confidence 45678999999999999999999988889999999 44444 333322 23579999999863 233 79999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
++..++|++++.+...++++++++|||||.|++.+....
T Consensus 252 ~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 290 (348)
T 3lst_A 252 VLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVP 290 (348)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBC
T ss_pred EEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 999999999866668999999999999999999886443
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-16 Score=116.59 Aligned_cols=114 Identities=15% Similarity=0.071 Sum_probs=67.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..++..+++++|+|+.+++.++.+....+.++.+.++|+.+.........++||+|++.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 67889999999999999999998877899999999999999998876544477888888765110000112689999995
Q ss_pred hhhc------CCCcch------------------HHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLS------AIHPNK------------------FSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~------~~~~~~------------------~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
..+. ++++.. ...++..+.++|+|||.+++...+
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 4332 222111 167888899999999995555543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=110.07 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=83.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|..+..++...+..+|+++|+|+.+++.++.++... .++.++..|+.......++. ++||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYANIV-EKVDVIY- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTS-CCEEEEE-
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCcccccccC-ccEEEEE-
Confidence 35678999999999999999998865569999999999999998876544 68999999987632212333 5899998
Q ss_pred chhhcCCC-cchHHHHHHHHHHhccCCeEEEEE
Q psy1107 157 IFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 157 ~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
++++ ++....++..+.++|+|||.+++.
T Consensus 149 ----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 149 ----EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp ----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 3333 334477899999999999999996
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-15 Score=113.56 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=83.7
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||+|||+|.++..++..+ .+++++|+++.+++.++.+....+ ++.+...|+... ....++||+|+
T Consensus 67 ~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~~~~----~~~~~~fD~v~ 139 (231)
T 1vbf_A 67 DLHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGTLG----YEEEKPYDRVV 139 (231)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGGGC----CGGGCCEEEEE
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCcccc----cccCCCccEEE
Confidence 45677899999999999999998876 599999999999999998865444 789999988651 11245899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
+..++++++ ..+.++|+|||.+++.....
T Consensus 140 ~~~~~~~~~--------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 140 VWATAPTLL--------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp ESSBBSSCC--------HHHHHTEEEEEEEEEEECSS
T ss_pred ECCcHHHHH--------HHHHHHcCCCcEEEEEEcCC
Confidence 999998885 25788999999999986443
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-15 Score=118.98 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=91.4
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc--CCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD--ASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.+|||+|||+|..+..++..+|..+++++|+ +.+++.++++.... ..++.+..+|+.+ +++ ++||+|++..
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~-~~~D~v~~~~ 241 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-----EVP-SNGDIYLLSR 241 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-----CCC-SSCSEEEEES
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-----CCC-CCCCEEEEch
Confidence 8999999999999999999888889999999 99999998876533 2579999999866 233 4799999999
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+++++++.....+++++.+.|+|||.+++.+....
T Consensus 242 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 276 (334)
T 2ip2_A 242 IIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS 276 (334)
T ss_dssp CGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 99999866777999999999999999999886543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=109.72 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=86.2
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++.. + .+++++|+++.+++.++.+. ..+...|+.+. ..++++++||+|++.
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~------~~~~~~d~~~~--~~~~~~~~fD~v~~~ 100 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL------DHVVLGDIETM--DMPYEEEQFDCVIFG 100 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS------SEEEESCTTTC--CCCSCTTCEEEEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC------CcEEEcchhhc--CCCCCCCccCEEEEC
Confidence 56789999999999999999887 3 69999999999999998764 26777887652 134556789999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+++|++ +...++..+.++|+|||.+++....
T Consensus 101 ~~l~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 101 DVLEHLF--DPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp SCGGGSS--CHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred ChhhhcC--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9999995 6679999999999999999997644
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.6e-15 Score=108.21 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=88.9
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CC--ceEEeccCCCcccccCCCCCcccE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SK--MNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~--i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
..++.+|||+|||+|.++..++.. ..+++++|+++.+++.++.+....+ .+ +.+...|+.+ ..+.++||+
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~D~ 122 (194)
T 1dus_A 50 VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-----NVKDRKYNK 122 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-----TCTTSCEEE
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-----ccccCCceE
Confidence 347789999999999999999887 3699999999999999998765443 33 8999998866 223558999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
|++..++++. ......++..+.++|+|||.+++.......
T Consensus 123 v~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 162 (194)
T 1dus_A 123 IITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQTKQG 162 (194)
T ss_dssp EEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEESTHH
T ss_pred EEECCCcccc-hhHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 9997766542 356788999999999999999998866543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=118.19 Aligned_cols=109 Identities=18% Similarity=0.144 Sum_probs=87.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC----CCceEEeccCCCcccccCCCCCcccE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA----SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
.++.+|||+|||+|.++..++..+|..+|+++|+|+.+++.++.+....+ .++.+...|+.+ .++.++||+
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-----~~~~~~fD~ 295 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-----GVEPFRFNA 295 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-----TCCTTCEEE
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-----cCCCCCeeE
Confidence 34589999999999999999999888899999999999999998866543 257788898866 345668999
Q ss_pred EEechhhcC---CCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 154 ATLIFVLSA---IHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 154 i~~~~~l~~---~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|++...+++ +.......++..+.++|+|||.+++....
T Consensus 296 Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 296 VLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp EEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred EEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 999877764 23345567899999999999999997643
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.9e-15 Score=111.61 Aligned_cols=103 Identities=14% Similarity=0.034 Sum_probs=84.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||+|||+|.++..++..+ .+++++|+++.+++.++++....+ .++.+...|+.+. ....++||+
T Consensus 73 l~~~~~~~vLdiG~G~G~~~~~la~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~D~ 146 (210)
T 3lbf_A 73 LELTPQSRVLEIGTGSGYQTAILAHLV--QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQG----WQARAPFDA 146 (210)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----CGGGCCEEE
T ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccC----CccCCCccE
Confidence 345678899999999999999998874 599999999999999998765443 4789999998762 223468999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|++..+++++++ .+.++|+|||.+++....
T Consensus 147 i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 147 IIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred EEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 999999888862 478899999999997654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=112.39 Aligned_cols=114 Identities=14% Similarity=0.180 Sum_probs=88.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc---cC--CCceEEeccCCCccc---ccCCC
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY---DA--SKMNVFPCDVTEDDI---LNQVP 147 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~---~~--~~i~~~~~d~~~~~~---~~~~~ 147 (218)
...++.+|||+|||+|.++..++...|..+++++|+++.+++.|+++... .+ .++.+++.|+.+... ...++
T Consensus 33 ~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~ 112 (260)
T 2ozv_A 33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP 112 (260)
T ss_dssp CCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred cccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence 34567899999999999999999988878999999999999999998765 44 358999999977310 01345
Q ss_pred CCcccEEEechhhcC----------------CCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 148 HNSVDIATLIFVLSA----------------IHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~----------------~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.++||+|+++-.+.. ........++..+.++|+|||.|++..
T Consensus 113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 678999999733221 112346788999999999999998865
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=107.67 Aligned_cols=92 Identities=21% Similarity=0.356 Sum_probs=76.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||+|.++..++ .+++++|+++. ++.+..+|+.+ .+++.++||+|
T Consensus 63 ~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------------~~~~~~~d~~~----~~~~~~~fD~v 119 (215)
T 2zfu_A 63 RQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------------DPRVTVCDMAQ----VPLEDESVDVA 119 (215)
T ss_dssp HTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------------STTEEESCTTS----CSCCTTCEEEE
T ss_pred hccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------------CceEEEecccc----CCCCCCCEeEE
Confidence 444677899999999999988773 48999999886 46778888876 45666789999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
++..++++ .+...++..+.++|+|||.+++.++..
T Consensus 120 ~~~~~l~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~ 154 (215)
T 2zfu_A 120 VFCLSLMG---TNIRDFLEEANRVLKPGGLLKVAEVSS 154 (215)
T ss_dssp EEESCCCS---SCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred EEehhccc---cCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 99998863 478899999999999999999987654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=118.16 Aligned_cols=104 Identities=17% Similarity=0.232 Sum_probs=88.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.++.. .++.+..+|+.+ +++.+ |+|++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~p~~--D~v~~ 267 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-----SGVEHLGGDMFD-----GVPKG--DAIFI 267 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-----CCCCC--SEEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-----CCCEEEecCCCC-----CCCCC--CEEEE
Confidence 34568999999999999999999999899999999 8887766543 579999999875 23433 99999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
..++|++++++...++++++++|+|||.|++.+....
T Consensus 268 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 268 KWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILP 304 (368)
T ss_dssp ESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred echhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 9999999877788999999999999999999886543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.4e-15 Score=118.97 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=91.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++..+|..+++++|+ +.+++.++++....+ .++.+..+|+.+ .++. .||+|
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~-~~D~v 253 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-----PLPR-KADAI 253 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-----CCSS-CEEEE
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-----CCCC-CccEE
Confidence 45678999999999999999999888889999999 999999988754433 479999999865 2333 49999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
++..+++++++.+...+++++.++|+|||.+++.+..
T Consensus 254 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 254 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 9999999997666678999999999999999998866
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=116.77 Aligned_cols=105 Identities=20% Similarity=0.251 Sum_probs=89.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.++.. .++.+..+|+.+ +++.+ |+|++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-----~~p~~--D~v~~ 265 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-----PGVTHVGGDMFK-----EVPSG--DTILM 265 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-----CCCCC--SEEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-----CCeEEEeCCcCC-----CCCCC--CEEEe
Confidence 45678999999999999999999999899999999 8877666542 579999999875 23333 99999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
..++|++++++...+++++++.|+|||.|++.+....+
T Consensus 266 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 303 (364)
T 3p9c_A 266 KWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPV 303 (364)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred hHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 99999998778889999999999999999998865443
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-14 Score=115.44 Aligned_cols=110 Identities=23% Similarity=0.272 Sum_probs=93.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..+..+|||||||+|.++..+++.+|..+++..|. +.+++.+++...... .++.+..+|+.. .+.+ .+|+++
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~----~~~~--~~D~~~ 249 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFK----DPLP--EADLYI 249 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTT----SCCC--CCSEEE
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCcccc----CCCC--CceEEE
Confidence 34567999999999999999999999999999997 888999987755433 689999999876 2333 579999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+..++|++++++...+++++++.|+|||.|++.+....
T Consensus 250 ~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~ 287 (353)
T 4a6d_A 250 LARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLD 287 (353)
T ss_dssp EESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred eeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence 99999999877888999999999999999999986543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.56 E-value=6.5e-15 Score=109.88 Aligned_cols=109 Identities=17% Similarity=0.093 Sum_probs=84.2
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCCCc-ccEE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPHNS-VDIA 154 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~-~D~i 154 (218)
++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|+.++...+ .++.+++.|+.+. ....+.++ ||+|
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~fD~I 129 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDF--LKQPQNQPHFDVV 129 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHH--TTSCCSSCCEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHH--HHhhccCCCCCEE
Confidence 568999999999999998776654 489999999999999998865544 4789999987652 11223458 9999
Q ss_pred EechhhcCCCcchHHHHHHHH--HHhccCCeEEEEEecCCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNL--FIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~--~~~Lk~gG~li~~~~~~~ 193 (218)
++...++ . .....++..+ .++|+|||.+++......
T Consensus 130 ~~~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 130 FLDPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp EECCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred EECCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 9876643 2 4677788888 668999999998765433
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-15 Score=111.06 Aligned_cols=105 Identities=16% Similarity=0.009 Sum_probs=84.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCC-CCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVP-HNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~-~~~~ 151 (218)
....++.+|||+|||+|.++..++... +..+++++|+++.+++.++++....+ .++.+...|+.. .++ .++|
T Consensus 73 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~f 147 (215)
T 2yxe_A 73 LDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTL-----GYEPLAPY 147 (215)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGG-----CCGGGCCE
T ss_pred hCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc-----CCCCCCCe
Confidence 345677899999999999999998875 55699999999999999998755433 468888888743 222 4579
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
|+|++..++++++ ..+.++|+|||.+++.....
T Consensus 148 D~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 148 DRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp EEEEESSBBSSCC--------HHHHHTEEEEEEEEEEESSS
T ss_pred eEEEECCchHHHH--------HHHHHHcCCCcEEEEEECCC
Confidence 9999999998885 37889999999999977543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.9e-15 Score=111.29 Aligned_cols=106 Identities=13% Similarity=0.149 Sum_probs=85.8
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccC-CCCCccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQ-VPHNSVD 152 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~-~~~~~~D 152 (218)
...++.+|||+|||+|..+..++...+..+++++|+++.+++.|++++...+ .++.++.+|+.+. .+ ...++||
T Consensus 68 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~~~fD 144 (232)
T 3ntv_A 68 RMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQ---FENVNDKVYD 144 (232)
T ss_dssp HHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC---HHHHTTSCEE
T ss_pred hhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH---HHhhccCCcc
Confidence 3456789999999999999999987777899999999999999998865544 4799999998762 11 1146899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++... ......+++.+.++|+|||+|++.+
T Consensus 145 ~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 145 MIFIDAA-----KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp EEEEETT-----SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEEEcCc-----HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 9997532 2467789999999999999998844
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-14 Score=107.79 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=82.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..++.+|||+|||+|.++..++.. ++..+++++|+++.+++.+++++... .++.++..|+.+.......+ ++||+|+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~ 148 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPEEYRALV-PKVDVIF 148 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGGGGTTTC-CCEEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEccCCCcchhhccc-CCceEEE
Confidence 456789999999999999999876 45569999999999998888765544 68999999987643212233 4899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+... .++....++..+.++|+|||.+++.
T Consensus 149 ~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 149 EDVA----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp ECCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCC----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 7533 2234455699999999999999987
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=117.78 Aligned_cols=115 Identities=10% Similarity=0.125 Sum_probs=86.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc-------cc---CCCceEEeccCCCccccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL-------YD---ASKMNVFPCDVTEDDILN 144 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~-------~~---~~~i~~~~~d~~~~~~~~ 144 (218)
....++.+|||||||+|..++.++...+..+++|+|+++.+++.|+.+.. .. ..++.|+++|+.+..+..
T Consensus 169 l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d 248 (438)
T 3uwp_A 169 IKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE 248 (438)
T ss_dssp HCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc
Confidence 34567889999999999999999876554469999999999999986431 11 257999999998743211
Q ss_pred CCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 145 QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.+ ..+|+|+++.++ +. .+....+.++++.|||||.|++.+....+
T Consensus 249 ~~--~~aDVVf~Nn~~--F~-pdl~~aL~Ei~RvLKPGGrIVssE~f~p~ 293 (438)
T 3uwp_A 249 RI--ANTSVIFVNNFA--FG-PEVDHQLKERFANMKEGGRIVSSKPFAPL 293 (438)
T ss_dssp HH--HTCSEEEECCTT--CC-HHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred cc--CCccEEEEcccc--cC-chHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence 11 268999987654 22 46777888999999999999998744443
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-14 Score=110.26 Aligned_cols=109 Identities=7% Similarity=-0.012 Sum_probs=86.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCC-CCCc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQV-PHNS 150 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~-~~~~ 150 (218)
....++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...+ .++.+..+|+.+.. ... ..++
T Consensus 59 ~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l--~~~~~~~~ 136 (248)
T 3tfw_A 59 VRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSL--ESLGECPA 136 (248)
T ss_dssp HHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH--HTCCSCCC
T ss_pred HhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH--HhcCCCCC
Confidence 3445778999999999999999998866 6799999999999999998865443 47999999886521 122 2348
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
||+|++.. +......+++.+.++|+|||+|++.+.
T Consensus 137 fD~V~~d~-----~~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 137 FDLIFIDA-----DKPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp CSEEEECS-----CGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred eEEEEECC-----chHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 99999853 234667899999999999999988653
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.7e-15 Score=110.38 Aligned_cols=106 Identities=11% Similarity=0.104 Sum_probs=78.9
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHH----HHhCCcccC-CCceEEeccCCCcccccCCCCCcc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF----FKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~----~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
..++.+|||+|||+|.++..++..+|..+|+++|+|+.+++. ++++....+ .++.+.++|+.+ .+++.+.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~----l~~~~~~- 99 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER----LPPLSGV- 99 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT----CCSCCCE-
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh----CCCCCCC-
Confidence 457789999999999999999999888899999999998775 333332222 489999999987 3444444
Q ss_pred cEEEec---hhhc--CCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLI---FVLS--AIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~---~~l~--~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|.|++. ...+ |++ +...++.++.++|||||.+++..
T Consensus 100 d~v~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 100 GELHVLMPWGSLLRGVLG--SSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp EEEEEESCCHHHHHHHHT--SSSHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEEEccchhhhhhhhc--cHHHHHHHHHHHcCCCcEEEEEe
Confidence 665532 2221 332 34689999999999999999843
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-14 Score=110.53 Aligned_cols=112 Identities=19% Similarity=0.246 Sum_probs=86.8
Q ss_pred hhcC-CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDV-GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~-~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
.... ++.+|||+|||+|.++..++..++. +++++|+++.+++.|++++...+ .++.+++.|+.+.. ..++.++|
T Consensus 44 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~--~~~~~~~f 120 (259)
T 3lpm_A 44 SYLPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT--DLIPKERA 120 (259)
T ss_dssp CCCCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGG--GTSCTTCE
T ss_pred hcCCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhh--hhhccCCc
Confidence 3445 6789999999999999999988764 99999999999999999866544 36999999987732 23556799
Q ss_pred cEEEechhhcCC------------------CcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAI------------------HPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~------------------~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|+++..+... .......++..+.++|+|||.+++..
T Consensus 121 D~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 121 DIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp EEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 999996443221 01235679999999999999999865
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-15 Score=119.61 Aligned_cols=108 Identities=20% Similarity=0.261 Sum_probs=88.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..+|..+++++|+|+.+++.++.+....+.+..+...|+.. ...++||+|++.
T Consensus 195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~------~~~~~fD~Iv~~ 268 (343)
T 2pjd_A 195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFS------EVKGRFDMIISN 268 (343)
T ss_dssp TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT------TCCSCEEEEEEC
T ss_pred CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccc------cccCCeeEEEEC
Confidence 35679999999999999999998887899999999999999998866555556777888754 124589999998
Q ss_pred hhhcCC---CcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSAI---HPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~---~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.++++. ..+....++..+.++|+|||.+++....
T Consensus 269 ~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 269 PPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred CCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 887752 2346788999999999999999997644
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=110.69 Aligned_cols=116 Identities=14% Similarity=0.188 Sum_probs=87.6
Q ss_pred CCCcEEEEecCCC--chhHHHHhh-cCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCC--CCcc
Q psy1107 78 VGEGVLLEVGCGV--GNFIFPLLS-WSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVP--HNSV 151 (218)
Q Consensus 78 ~~~~~vLDiGcG~--G~~~~~~~~-~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~--~~~~ 151 (218)
....+|||||||. +..+..++. ..|.++|+++|.|+.+++.++.+....+ .++.|++.|+.+.......+ ...|
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 3557999999997 555566654 4678899999999999999998755433 47999999998742111101 1234
Q ss_pred c-----EEEechhhcCCCcch-HHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 152 D-----IATLIFVLSAIHPNK-FSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 152 D-----~i~~~~~l~~~~~~~-~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
| .|++..++||+++.+ +..++..+.+.|+|||+|++.+....
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 4 588889999998644 68899999999999999999886654
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=115.88 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=84.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..+++.+ ..+|+|+|+| .+++.|+++....+ .++.++++|+.+ .+++.++||+|
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g-~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~I 137 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEE----VELPVEKVDII 137 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTT-CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTT----CCCSSSCEEEE
T ss_pred cCCCCEEEEEeccchHHHHHHHHCC-CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHH----ccCCCCceEEE
Confidence 4577899999999999999999874 3599999999 49999988765443 359999999987 35666799999
Q ss_pred EechhhcCCC-cchHHHHHHHHHHhccCCeEEEE
Q psy1107 155 TLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 155 ~~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
++..+.+++. ......++..+.++|||||.++.
T Consensus 138 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 138 ISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp EECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 9976544442 35788899999999999999874
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-15 Score=107.01 Aligned_cols=111 Identities=10% Similarity=0.108 Sum_probs=83.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++.. +..+++++|+++.+++.++.+....+ .++.++..|+.+. .+...++||+|
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~fD~i 104 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA---IDCLTGRFDLV 104 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH---HHHBCSCEEEE
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh---HHhhcCCCCEE
Confidence 456789999999999999999877 34599999999999999998865544 3688998887652 11123469999
Q ss_pred EechhhcCCCcchHHHHHHHHH--HhccCCeEEEEEecCCCc
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLF--IMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~--~~Lk~gG~li~~~~~~~~ 194 (218)
++..+++. .....++..+. ++|+|||.+++.......
T Consensus 105 ~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 143 (177)
T 2esr_A 105 FLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKTVL 143 (177)
T ss_dssp EECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred EECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence 98654321 34556677776 999999999997755443
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=107.09 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=85.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..++.+|||+|||+|.++..++.. +..+++++|+++.+++.++++....+ .++.+...|+.+. ..++||+|+
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~------~~~~fD~i~ 130 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD------VDGKFDLIV 130 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT------CCSCEEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc------CCCCceEEE
Confidence 457789999999999999998875 34599999999999999998865444 3489999998651 246899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+..+++ ....+++.+.++|+|||.+++.++....
T Consensus 131 ~~~~~~-----~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 164 (205)
T 3grz_A 131 ANILAE-----ILLDLIPQLDSHLNEDGQVIFSGIDYLQ 164 (205)
T ss_dssp EESCHH-----HHHHHGGGSGGGEEEEEEEEEEEEEGGG
T ss_pred ECCcHH-----HHHHHHHHHHHhcCCCCEEEEEecCccc
Confidence 976554 3568899999999999999997655444
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-14 Score=109.16 Aligned_cols=111 Identities=15% Similarity=0.218 Sum_probs=83.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc--------C-CCceEEeccCCCcccccCCCC
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD--------A-SKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~--------~-~~i~~~~~d~~~~~~~~~~~~ 148 (218)
.++.+|||+|||+|.++..++..+|...++|+|+|+.+++.+++++... + .++.++.+|+.+. +...++.
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~-l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF-LPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC-GGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH-HHHhccc
Confidence 4678999999999999999999888789999999999999998764432 2 5799999998762 1123566
Q ss_pred CcccEEEechhhcCCCc------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSAIHP------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+++|.|++.+.-.+... .....++..+.++|+|||.|++..
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 78999986432111000 001478999999999999999864
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=116.45 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=86.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..+..+|||+|||+|.++..+++.+|..+++++|+ +.+++.++.. .++.+..+|+.+ +++. ||+|++
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~~~--~D~v~~ 273 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-----SGIEHVGGDMFA-----SVPQ--GDAMIL 273 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-----CCCC--EEEEEE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-----CCCEEEeCCccc-----CCCC--CCEEEE
Confidence 34678999999999999999999998889999999 8888776542 468999999865 2333 999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
..+++++++.....++++++++|+|||.|++.++.
T Consensus 274 ~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 274 KAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 99999997555669999999999999999998754
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=110.81 Aligned_cols=113 Identities=17% Similarity=0.233 Sum_probs=83.4
Q ss_pred CCcEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCccc---C--CC----------------------
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYD---A--SK---------------------- 129 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~---~--~~---------------------- 129 (218)
++.+|||+|||+|.++..++.. .+..+++|+|+|+.+++.|+.+.... + .+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999999877 55679999999999999999764432 1 11
Q ss_pred ---ce-------------EEeccCCCcccccCC-CCCcccEEEechhhcCCCc-------chHHHHHHHHHHhccCCeEE
Q psy1107 130 ---MN-------------VFPCDVTEDDILNQV-PHNSVDIATLIFVLSAIHP-------NKFSTVVKNLFIMLKSGGII 185 (218)
Q Consensus 130 ---i~-------------~~~~d~~~~~~~~~~-~~~~~D~i~~~~~l~~~~~-------~~~~~~l~~~~~~Lk~gG~l 185 (218)
+. +.+.|+.+....... ...+||+|++..++.+... +....++..+.++|+|||.+
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 56 888988662100000 2347999999765544431 45668999999999999999
Q ss_pred EEEecC
Q psy1107 186 LFRDYG 191 (218)
Q Consensus 186 i~~~~~ 191 (218)
++.+..
T Consensus 211 ~~~~~~ 216 (250)
T 1o9g_A 211 AVTDRS 216 (250)
T ss_dssp EEEESS
T ss_pred EEeCcc
Confidence 996543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-14 Score=101.98 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=78.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..+ +++++|+|+.+++. ..++.+.++|+.+ +++.++||+|+++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~--------~~~~~~~~~d~~~-----~~~~~~fD~i~~n 85 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES--------HRGGNLVRADLLC-----SINQESVDVVVFN 85 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT--------CSSSCEEECSTTT-----TBCGGGCSEEEEC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc--------ccCCeEEECChhh-----hcccCCCCEEEEC
Confidence 466799999999999999998876 99999999999887 2468899999876 2333689999998
Q ss_pred hhhcCCCcc-------hHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 158 FVLSAIHPN-------KFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 158 ~~l~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
..+++.++. +...++..+.+.+ |||.+++......
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~ 127 (170)
T 3q87_B 86 PPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN 127 (170)
T ss_dssp CCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG
T ss_pred CCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC
Confidence 777655422 3456788888888 9999999775433
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-14 Score=114.85 Aligned_cols=104 Identities=15% Similarity=0.164 Sum_probs=87.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..+..+|||+|||+|..+..+++.+|..+++++|+ +.+++.++.. .++.+..+|+.+ +++ .||+|++
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~p--~~D~v~~ 252 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-----NNLTYVGGDMFT-----SIP--NADAVLL 252 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-----TTEEEEECCTTT-----CCC--CCSEEEE
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-----CCcEEEeccccC-----CCC--CccEEEe
Confidence 34668999999999999999999888889999999 9888776642 358999999865 223 3999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccC---CeEEEEEecCCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKS---GGIILFRDYGLH 193 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~---gG~li~~~~~~~ 193 (218)
..+++++++.....++++++++|+| ||.|++.+....
T Consensus 253 ~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 292 (352)
T 1fp2_A 253 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID 292 (352)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred ehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence 9999999755566999999999999 999999886543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.53 E-value=9.8e-15 Score=107.26 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=83.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+|||+|||+|.++..++..+ ..+++++|+++.+++.++.+....+ .++.++++|+.+.....+...++||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 467899999999999999887753 3599999999999999998865544 4689999988662110111245899999
Q ss_pred echhhcCCCcchHHHHHHHH--HHhccCCeEEEEEecCCC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNL--FIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~--~~~Lk~gG~li~~~~~~~ 193 (218)
+..+++. ......+..+ .++|+|||.+++......
T Consensus 122 ~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 122 LDPPYAK---QEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp ECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred ECCCCCc---hhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 9766442 2445566666 888999999998764433
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-14 Score=108.50 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=81.6
Q ss_pred cEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.+|||+|||+|..+..++... +..+++++|+++.+++.|++++...+ .++.++++|+.+. ...++.++||+|++
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~--l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV--MSRLANDSYQLVFG 135 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH--GGGSCTTCEEEEEE
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHH--HHHhcCCCcCeEEE
Confidence 499999999999999999864 36799999999999999998865543 3699999887652 12343568999997
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
... ......+++.+.++|+|||.+++.+
T Consensus 136 d~~-----~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 136 QVS-----PMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CCC-----TTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred cCc-----HHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 532 2456779999999999999999844
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-15 Score=107.14 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=81.8
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
++.+|||+|||+|.++..++..++ .++++|+|+.+++.++.+....+.++.+.+.|+.+..........+||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 678999999999999999998875 499999999999999987654434788888887652100111123799999986
Q ss_pred hhcCCCcchHHHHHHHHH--HhccCCeEEEEEecCCCch
Q psy1107 159 VLSAIHPNKFSTVVKNLF--IMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~--~~Lk~gG~li~~~~~~~~~ 195 (218)
+++ . ....++..+. ++|+|||.+++........
T Consensus 119 ~~~-~---~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~~ 153 (171)
T 1ws6_A 119 PYA-M---DLAALFGELLASGLVEAGGLYVLQHPKDLYL 153 (171)
T ss_dssp CTT-S---CTTHHHHHHHHHTCEEEEEEEEEEEETTSCC
T ss_pred CCc-h---hHHHHHHHHHhhcccCCCcEEEEEeCCccCC
Confidence 654 1 2334555555 9999999999977554443
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=107.03 Aligned_cols=112 Identities=12% Similarity=0.062 Sum_probs=88.7
Q ss_pred HHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCC
Q psy1107 70 FHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVP 147 (218)
Q Consensus 70 ~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~ 147 (218)
+..+.....++.+|||+|||+|.+++.++..+|..+|+++|+++.+++.|+.++...+ .++.+..+|..+ +++
T Consensus 6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-----~l~ 80 (225)
T 3kr9_A 6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-----AFE 80 (225)
T ss_dssp HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-----GCC
T ss_pred HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh-----hcc
Confidence 3344445567889999999999999999998887899999999999999999977655 368999998855 333
Q ss_pred CC-cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 148 HN-SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 148 ~~-~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+ +||+|+...+ .......++..+...|+++|.|++...
T Consensus 81 ~~~~~D~IviaG~----Gg~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 81 ETDQVSVITIAGM----GGRLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp GGGCCCEEEEEEE----CHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred cCcCCCEEEEcCC----ChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 33 6998886433 213467889999999999999998664
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=109.16 Aligned_cols=94 Identities=17% Similarity=0.194 Sum_probs=78.6
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCC-CCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVP-HNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~~~D~i~ 155 (218)
..++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++.+ ..++.++++|+.+. .+++ +++||+|+
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----~~~~~~~~~d~~~~---~~~~~~~~fD~v~ 116 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQA--ARWAAYDFSPELLKLARAN----APHADVYEWNGKGE---LPAGLGAPFGLIV 116 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHH----CTTSEEEECCSCSS---CCTTCCCCEEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHh----CCCceEEEcchhhc---cCCcCCCCEEEEE
Confidence 4677899999999999999999874 5999999999999999987 34799999998642 4455 67999999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
+. .+...++..+.++|||||.++.
T Consensus 117 ~~--------~~~~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 117 SR--------RGPTSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp EE--------SCCSGGGGGHHHHEEEEEEEEE
T ss_pred eC--------CCHHHHHHHHHHHcCCCcEEEE
Confidence 86 1345688899999999999983
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-14 Score=109.53 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=84.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcc--cccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDD--ILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~--~~~~~~~~ 149 (218)
....++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++++...+ .++.++++|+.+.. .......+
T Consensus 54 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 133 (221)
T 3u81_A 54 IREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVD 133 (221)
T ss_dssp HHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCC
T ss_pred HHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCC
Confidence 334567899999999999999999864 36799999999999999998865444 36999999875421 00111226
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+||+|++....++. .....++..+ ++|+|||.+++.+..
T Consensus 134 ~fD~V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 134 TLDMVFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp CCSEEEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred ceEEEEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 89999987655444 2334566666 999999999986644
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-14 Score=111.04 Aligned_cols=105 Identities=15% Similarity=0.264 Sum_probs=84.9
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|.++..++..++. +|+++|+|+.+++.+++++...+ .++.++++|+.+. .. .++||+
T Consensus 122 ~~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~----~~-~~~fD~ 195 (278)
T 2frn_A 122 VAKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF----PG-ENIADR 195 (278)
T ss_dssp HCCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC----CC-CSCEEE
T ss_pred hCCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHh----cc-cCCccE
Confidence 3456889999999999999999988764 89999999999999998866444 3488999998772 22 568999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
|++.. |.....++..+.++|+|||.+++.+...
T Consensus 196 Vi~~~------p~~~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 196 ILMGY------VVRTHEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp EEECC------CSSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEECC------chhHHHHHHHHHHHCCCCeEEEEEEeec
Confidence 99842 2344678889999999999999987653
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-15 Score=116.85 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=81.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.++.++...+ .++.++++|+.+. . +.++||
T Consensus 74 ~~~~~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~-~~~~~D 146 (241)
T 3gdh_A 74 SQSFKCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL----A-SFLKAD 146 (241)
T ss_dssp HHHSCCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----G-GGCCCS
T ss_pred hhccCCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHh----c-ccCCCC
Confidence 334478899999999999999999876 699999999999999998866555 4799999998762 1 345899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
+|++..++++.. .....+..+.++|+|||.+++
T Consensus 147 ~v~~~~~~~~~~--~~~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 147 VVFLSPPWGGPD--YATAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp EEEECCCCSSGG--GGGSSSBCTTTSCSSCHHHHH
T ss_pred EEEECCCcCCcc--hhhhHHHHHHhhcCCcceeHH
Confidence 999988777663 333355566777788877554
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-14 Score=109.02 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=75.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCC-HHHHHHH---HhCCcccC-CCceEEeccCCCcccccCCCCCcc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDIS-PRAVNFF---KLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s-~~~~~~~---~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
..++.+|||||||+|.++..++...+..+|+|+|+| +.+++.| +++....+ .++.+.+.|+.... ..+. +.+
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~--~~~~-d~v 98 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLP--FELK-NIA 98 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCC--GGGT-TCE
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhh--hhcc-CeE
Confidence 356789999999999999999877777899999999 5666655 77655444 57899999887621 1111 244
Q ss_pred cEEEechhhcCCC---cchHHHHHHHHHHhccCCeEEEEE
Q psy1107 152 DIATLIFVLSAIH---PNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 152 D~i~~~~~l~~~~---~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
|.|.+.+...... ..+...++.++.++|||||.+++.
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 99 DSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp EEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred EEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence 5554432111100 012246789999999999999983
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-14 Score=108.41 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=80.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..++.+|||+|||+|.++..++... +..+++++|+|+.+++.+.+++... .++.+..+|+.+... .+...++||+|+
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~-~~~~~~~~D~V~ 152 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHK-YRMLIAMVDVIF 152 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGG-GGGGCCCEEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhh-hcccCCcEEEEE
Confidence 4567899999999999999998873 5679999999988666555443322 578999999876321 123345899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+... .++....++..+.++|||||.+++..
T Consensus 153 ~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 153 ADVA----QPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp ECCC----CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCC----CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 8433 33455667888999999999999954
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-14 Score=106.90 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=91.0
Q ss_pred HHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccC
Q psy1107 68 NEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQ 145 (218)
Q Consensus 68 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~ 145 (218)
+.+..+.....++.+|+|+|||+|.+++.++..+|..+|+++|+++.+++.|+.+....+ .++.+..+|..+. .
T Consensus 10 ~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~----~ 85 (230)
T 3lec_A 10 KRLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSA----F 85 (230)
T ss_dssp HHHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG----C
T ss_pred HHHHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c
Confidence 344445455677889999999999999999998887799999999999999999976655 4699999998662 2
Q ss_pred CCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 146 VPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 146 ~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+..+||+|+...+.. +....++......|+++|.|++....
T Consensus 86 ~~~~~~D~IviaGmGg----~lI~~IL~~~~~~l~~~~~lIlqp~~ 127 (230)
T 3lec_A 86 EEADNIDTITICGMGG----RLIADILNNDIDKLQHVKTLVLQPNN 127 (230)
T ss_dssp CGGGCCCEEEEEEECH----HHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred ccccccCEEEEeCCch----HHHHHHHHHHHHHhCcCCEEEEECCC
Confidence 2223699987644322 35678888899999999999987743
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.52 E-value=8e-14 Score=105.81 Aligned_cols=107 Identities=18% Similarity=0.130 Sum_probs=76.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..++.+|||+|||+|.++..++.. ++..+|+++|+++.+++.+...+.. ..++.++.+|+........+ .++||+|+
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-r~nv~~i~~Da~~~~~~~~~-~~~~D~I~ 151 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-RPNIFPLLADARFPQSYKSV-VENVDVLY 151 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-CTTEEEEECCTTCGGGTTTT-CCCEEEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-cCCeEEEEcccccchhhhcc-ccceEEEE
Confidence 567899999999999999999876 5667999999999876433222111 14799999998764321222 34899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.... ++....+...+.++|||||.|++..
T Consensus 152 ~d~a~----~~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 152 VDIAQ----PDQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp ECCCC----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ecCCC----hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence 86432 2344444556677999999999875
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-14 Score=105.99 Aligned_cols=106 Identities=10% Similarity=-0.034 Sum_probs=82.1
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.++++....+ .++.+++.|+.+. .+...++||+|++.
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~---~~~~~~~fD~V~~~ 129 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF---LAQKGTPHNIVFVD 129 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH---HSSCCCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH---HhhcCCCCCEEEEC
Confidence 568999999999999998777653 399999999999999998866544 4789999987652 23345589999987
Q ss_pred hhhcCCCcchHHHHHHHHHH--hccCCeEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFI--MLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~--~Lk~gG~li~~~~~ 191 (218)
..++ . .....++..+.+ +|+|||.+++....
T Consensus 130 ~p~~-~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 130 PPFR-R--GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp CSSS-T--TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCCC-C--CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 6533 2 356677777765 59999999987644
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-14 Score=103.82 Aligned_cols=110 Identities=13% Similarity=0.156 Sum_probs=83.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc----cccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD----ILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~~~ 149 (218)
....++.+|||+|||+|.++..++.. ++..+++++|+++ ++.. .++.+...|+.+.. +...++.+
T Consensus 18 ~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 18 KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------VGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred CCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------CcEEEEEcccccchhhhhhhccCCCC
Confidence 33567789999999999999999887 4667999999998 5421 46888899987732 00014556
Q ss_pred cccEEEechhhcCCCcc---h------HHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 150 SVDIATLIFVLSAIHPN---K------FSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~---~------~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+||+|++..++++.... . ...++..+.++|+|||.+++..+....
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 141 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc
Confidence 89999998877766421 1 168899999999999999998765544
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.2e-14 Score=112.73 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=83.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|.++..+++.+ ..+|+++|+|+ +++.|+++....+ .++.++.+|+.+ .+++.++||+
T Consensus 61 ~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~~D~ 134 (340)
T 2fyt_A 61 HIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEE----VHLPVEKVDV 134 (340)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT----SCCSCSCEEE
T ss_pred hhcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHH----hcCCCCcEEE
Confidence 34677899999999999999998875 34999999996 8999888755443 579999999877 3556668999
Q ss_pred EEechhhcCC-CcchHHHHHHHHHHhccCCeEEE
Q psy1107 154 ATLIFVLSAI-HPNKFSTVVKNLFIMLKSGGIIL 186 (218)
Q Consensus 154 i~~~~~l~~~-~~~~~~~~l~~~~~~Lk~gG~li 186 (218)
|++..+...+ .......++..+.++|||||.++
T Consensus 135 Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 135 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 9986632222 22467789999999999999987
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=109.25 Aligned_cols=103 Identities=21% Similarity=0.168 Sum_probs=82.5
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCC-CcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPH-NSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~-~~~D~ 153 (218)
...++.+|||+|||+|.++..++...+ .+++++|+++.+++.++++....+ .++.+..+|+.. .++. .+||+
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~fD~ 161 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK-----GFPPKAPYDV 161 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-----CCGGGCCEEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc-----CCCCCCCccE
Confidence 456778999999999999999998876 699999999999999998765443 468888888722 2332 35999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
|++..++++++ ..+.+.|+|||.+++.....
T Consensus 162 Ii~~~~~~~~~--------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 162 IIVTAGAPKIP--------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEEEEEEECSS
T ss_pred EEECCcHHHHH--------HHHHHhcCCCcEEEEEEecC
Confidence 99998888775 25788999999999977543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.7e-14 Score=107.25 Aligned_cols=111 Identities=12% Similarity=-0.014 Sum_probs=85.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCccccc-CCCCCc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILN-QVPHNS 150 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~-~~~~~~ 150 (218)
....++.+|||+|||+|..+..++...| ..+++++|+++.+++.+++++...+ .++.++++|+.+..... ....++
T Consensus 54 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 133 (223)
T 3duw_A 54 VQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEP 133 (223)
T ss_dssp HHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCC
T ss_pred HHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence 3445778999999999999999998866 6799999999999999998865433 36899999886521000 011147
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
||+|++... ......++..+.++|+|||.+++.+.
T Consensus 134 fD~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 134 FDFIFIDAD-----KQNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp CSEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred cCEEEEcCC-----cHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999997543 24667899999999999998888653
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-14 Score=102.84 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=83.7
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++. +..+++++|+++.+++.++.+....+ .++.+.+.|+.+ .++.++||+|
T Consensus 32 ~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~D~i 104 (183)
T 2yxd_A 32 NLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-----VLDKLEFNKA 104 (183)
T ss_dssp CCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-----HGGGCCCSEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-----cccCCCCcEE
Confidence 345678999999999999999987 55799999999999999998865444 478999998865 2233589999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
++..+ .+...++..+.++ |||.+++.......
T Consensus 105 ~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~~~~~ 136 (183)
T 2yxd_A 105 FIGGT------KNIEKIIEILDKK--KINHIVANTIVLEN 136 (183)
T ss_dssp EECSC------SCHHHHHHHHHHT--TCCEEEEEESCHHH
T ss_pred EECCc------ccHHHHHHHHhhC--CCCEEEEEeccccc
Confidence 99766 3567888888888 99999998755443
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=107.45 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=82.2
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++...+..+++++|+|+.+++.++++. .++.+...|+.+ .++++++||+|++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~----~~~~~~~fD~v~~~ 155 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHR----LPFSDTSMDAIIRI 155 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTS----CSBCTTCEEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcchhh----CCCCCCceeEEEEe
Confidence 5678999999999999999998766679999999999999998763 467888888876 34566789999986
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.+. ..+.++.++|+|||.+++.......
T Consensus 156 ~~~---------~~l~~~~~~L~pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 156 YAP---------CKAEELARVVKPGGWVITATPGPRH 183 (269)
T ss_dssp SCC---------CCHHHHHHHEEEEEEEEEEEECTTT
T ss_pred CCh---------hhHHHHHHhcCCCcEEEEEEcCHHH
Confidence 441 2478899999999999998866544
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-14 Score=115.94 Aligned_cols=107 Identities=15% Similarity=0.169 Sum_probs=85.8
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|.++..+++.+. .+|+++|+| .+++.++++....+ .++.++++|+.+ ..++ ++||+
T Consensus 60 ~~~~~~~VLDlGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~-~~~D~ 132 (376)
T 3r0q_C 60 HHFEGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVED----ISLP-EKVDV 132 (376)
T ss_dssp TTTTTCEEEEESCTTTHHHHHHHHTTC-SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGG----CCCS-SCEEE
T ss_pred ccCCCCEEEEeccCcCHHHHHHHhcCC-CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhh----cCcC-CcceE
Confidence 346788999999999999999998764 399999999 99999988765444 458999999976 2333 68999
Q ss_pred EEechhhcCCC-cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++..+.+++. ......++..+.++|+|||.+++..
T Consensus 133 Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 133 IISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp EEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred EEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 99966555443 2467889999999999999998744
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.6e-14 Score=113.09 Aligned_cols=105 Identities=14% Similarity=0.041 Sum_probs=85.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|.++..++..++ ..+|+++|+|+.+++.++++....+ .++.+...|+.+. ..+.++||
T Consensus 71 l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~----~~~~~~fD 146 (317)
T 1dl5_A 71 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG----VPEFSPYD 146 (317)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----CGGGCCEE
T ss_pred cCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc----cccCCCeE
Confidence 3456788999999999999999998765 3679999999999999998865444 4689999988662 22345899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+|++..++++++ ..+.++|||||.+++....
T Consensus 147 ~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 147 VIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp EEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred EEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 999999998885 4678899999999997643
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-14 Score=104.62 Aligned_cols=108 Identities=14% Similarity=0.197 Sum_probs=78.6
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCC--ccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc------------
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSK--ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI------------ 142 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~--~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------------ 142 (218)
..++.+|||+|||+|.++..++...+ ..+++++|+|+.+ ...++.+.+.|+.+...
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~ 89 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PIPNVYFIQGEIGKDNMNNIKNINYIDNM 89 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CCTTCEEEECCTTTTSSCCC---------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CCCCceEEEccccchhhhhhccccccccc
Confidence 45678999999999999999998866 5799999999831 12468888998876320
Q ss_pred ---------ccCCCCCcccEEEechhhcCCCc---ch------HHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 143 ---------LNQVPHNSVDIATLIFVLSAIHP---NK------FSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 143 ---------~~~~~~~~~D~i~~~~~l~~~~~---~~------~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
...++..+||+|++...+++... +. ...++..+.++|+|||.|++..+....
T Consensus 90 ~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 159 (201)
T 2plw_A 90 NNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQ 159 (201)
T ss_dssp --CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTT
T ss_pred cchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCC
Confidence 00034568999999776655321 11 124788899999999999997766444
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-14 Score=108.30 Aligned_cols=102 Identities=11% Similarity=0.114 Sum_probs=79.1
Q ss_pred CCcEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
++.+|||||||+|..+..+++. ++..+|+++|+++.+++.|+. ...++.++++|+.+..........+||+|
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~~~v~~~~gD~~~~~~l~~~~~~~fD~I 156 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DMENITLHQGDCSDLTTFEHLREMAHPLI 156 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cCCceEEEECcchhHHHHHhhccCCCCEE
Confidence 5679999999999999999886 567899999999999887762 23579999999876311111223379999
Q ss_pred EechhhcCCCcchHHHHHHHHHH-hccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFI-MLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~-~Lk~gG~li~~~ 189 (218)
++... |. +...++..+.+ +|||||+|++.+
T Consensus 157 ~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 157 FIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp EEESS--CS---SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred EECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEe
Confidence 98654 22 56778999997 999999999965
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-14 Score=106.58 Aligned_cols=112 Identities=10% Similarity=0.071 Sum_probs=85.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcc--cccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDD--ILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~--~~~~~~~~ 149 (218)
....++.+|||+|||+|..+..++...+ ..+++++|+++.+++.++++....+ .++.++++|+.+.. .......+
T Consensus 60 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 139 (225)
T 3tr6_A 60 VKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAW 139 (225)
T ss_dssp HHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTT
T ss_pred HHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCC
Confidence 3445678999999999999999998765 6799999999999999998865444 45999999875521 00011115
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+||+|++.. +......++..+.++|+|||++++.+..
T Consensus 140 ~fD~v~~~~-----~~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 140 QYDLIYIDA-----DKANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp CEEEEEECS-----CGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred CccEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 899999643 2346778999999999999999986643
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-14 Score=108.28 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=90.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||.|.++..++...|...|+++|+++.+++.++.++...+....+.+.|... ..+.++||++
T Consensus 128 ~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~-----~~p~~~~Dva 202 (281)
T 3lcv_B 128 RHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLE-----DRLDEPADVT 202 (281)
T ss_dssp GGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTT-----SCCCSCCSEE
T ss_pred hccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecc-----cCCCCCcchH
Confidence 34466889999999999999999988888999999999999999999987767678888888755 4456689999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++.-+++++..+.....+ .+...|+++|+++--+
T Consensus 203 L~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 203 LLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFP 236 (281)
T ss_dssp EETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEE
T ss_pred HHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEecc
Confidence 999999999644444666 8999999999776644
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.9e-14 Score=110.12 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=86.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCccc-C-CCceEEeccCCCcccccCCCCCccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYD-A-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~-~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
...++.+|||+|||+|.++..++.. .|..+++++|+++.+++.++++.... + .++.+..+|+.+ .++.++||
T Consensus 107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-----~~~~~~fD 181 (275)
T 1yb2_A 107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-----FISDQMYD 181 (275)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-----CCCSCCEE
T ss_pred CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-----cCcCCCcc
Confidence 4567789999999999999999987 56679999999999999999886544 3 578999998865 33456899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
+|++ +++ +...+++.+.++|+|||.+++.....
T Consensus 182 ~Vi~-----~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 182 AVIA-----DIP--DPWNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp EEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred EEEE-----cCc--CHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 9997 333 44678999999999999999987543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.9e-14 Score=106.83 Aligned_cols=116 Identities=5% Similarity=-0.007 Sum_probs=90.3
Q ss_pred HHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccC
Q psy1107 68 NEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQ 145 (218)
Q Consensus 68 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~ 145 (218)
..+..+.....++.+|||||||+|.+++.++..+|..+++++|+++.+++.|++++...+ .++.+..+|..+. .
T Consensus 10 ~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~----~ 85 (244)
T 3gnl_A 10 KRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAV----I 85 (244)
T ss_dssp HHHHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG----C
T ss_pred HHHHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhc----c
Confidence 344445455677889999999999999999998887799999999999999999976655 3589999998662 2
Q ss_pred CCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 146 VPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 146 ~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+..+||+|+...+ ..+....++......|+++|.|++....
T Consensus 86 ~~~~~~D~Iviagm----Gg~lI~~IL~~~~~~L~~~~~lIlq~~~ 127 (244)
T 3gnl_A 86 EKKDAIDTIVIAGM----GGTLIRTILEEGAAKLAGVTKLILQPNI 127 (244)
T ss_dssp CGGGCCCEEEEEEE----CHHHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred CccccccEEEEeCC----chHHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 22225999886433 2235678889999999999999987643
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-14 Score=108.76 Aligned_cols=107 Identities=20% Similarity=0.302 Sum_probs=87.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||+|||+|.++..++..++..+|+++|+++.+++.+++++...+ .++.++++|+.+. +. .++||+
T Consensus 115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~----~~-~~~~D~ 189 (272)
T 3a27_A 115 FISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV----EL-KDVADR 189 (272)
T ss_dssp TSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC----CC-TTCEEE
T ss_pred HhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc----Cc-cCCceE
Confidence 44567889999999999999999988766799999999999999999876555 5788999998762 22 458999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
|++... .....++..+.+.|+|||.+++.++..
T Consensus 190 Vi~d~p------~~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 190 VIMGYV------HKTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp EEECCC------SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEECCc------ccHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 997532 245678899999999999999988665
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=106.25 Aligned_cols=104 Identities=10% Similarity=0.000 Sum_probs=82.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
..++.+|||+|||+|..+..++...+ ..+++++|+++.+++.++++....+ .++.++.+|+.+. .+...+ ||+
T Consensus 54 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~-fD~ 129 (210)
T 3c3p_A 54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI---AAGQRD-IDI 129 (210)
T ss_dssp HHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH---HTTCCS-EEE
T ss_pred hhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH---hccCCC-CCE
Confidence 34678999999999999999998765 6799999999999999998765433 3688999887651 122235 999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++... ......+++.+.++|+|||.+++.+
T Consensus 130 v~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 130 LFMDCD-----VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EEEETT-----TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred EEEcCC-----hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 998632 2467789999999999999998854
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-14 Score=112.90 Aligned_cols=105 Identities=21% Similarity=0.242 Sum_probs=84.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..+++.+ ..+|+++|+|+ +++.++++....+ .++.++.+|+.+. .++ ++||+|
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~~~-~~~D~I 120 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV----SLP-EQVDII 120 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC----CCS-SCEEEE
T ss_pred cCCcCEEEEcCCCccHHHHHHHhCC-CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhC----CCC-CceeEE
Confidence 4577899999999999999988764 35999999996 7788877654433 5799999998772 333 479999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
++..+++|+..+.....+..+.++|+|||.+++.
T Consensus 121 vs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 121 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 9988877776566777888899999999999853
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-14 Score=120.00 Aligned_cols=105 Identities=11% Similarity=0.139 Sum_probs=80.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.++++... .....+...+... .++++++||+|++
T Consensus 105 ~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~~~~~~----l~~~~~~fD~I~~ 177 (416)
T 4e2x_A 105 TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREKGIR-VRTDFFEKATADD----VRRTEGPANVIYA 177 (416)
T ss_dssp CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTTTCC-EECSCCSHHHHHH----HHHHHCCEEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHcCCC-cceeeechhhHhh----cccCCCCEEEEEE
Confidence 3567899999999999999999875 4999999999999999976110 0011111111111 2234568999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
..+++|++ ++..+++.+.++|||||.+++...
T Consensus 178 ~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 178 ANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp ESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999995 889999999999999999999753
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-14 Score=110.30 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=84.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..++ +++++|+++.+++.++.+....+..+.+...|+.+. ++.++||+|++
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-----~~~~~fD~Vv~ 190 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-----LPFGPFDLLVA 190 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-----GGGCCEEEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-----CcCCCCCEEEE
Confidence 46778999999999999999988775 999999999999999988655443378888877551 33458999998
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+... +....++..+.++|+|||.+++.......
T Consensus 191 n~~~-----~~~~~~l~~~~~~LkpgG~lils~~~~~~ 223 (254)
T 2nxc_A 191 NLYA-----ELHAALAPRYREALVPGGRALLTGILKDR 223 (254)
T ss_dssp ECCH-----HHHHHHHHHHHHHEEEEEEEEEEEEEGGG
T ss_pred CCcH-----HHHHHHHHHHHHHcCCCCEEEEEeeccCC
Confidence 6433 34568899999999999999997754443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.4e-14 Score=108.50 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=86.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....++.+|||+|||+|.++..++.. +|..+++++|+++.+++.|+++....+ .++.+...|+.+ .++.++|
T Consensus 89 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~ 163 (255)
T 3mb5_A 89 AGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE-----GIEEENV 163 (255)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG-----CCCCCSE
T ss_pred hCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh-----ccCCCCc
Confidence 44567889999999999999999988 777899999999999999998865444 348999999875 3556689
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|+|++. .+ +...++..+.++|+|||.+++....
T Consensus 164 D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 164 DHVILD-----LP--QPERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp EEEEEC-----SS--CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CEEEEC-----CC--CHHHHHHHHHHHcCCCCEEEEEECC
Confidence 999973 32 4457899999999999999997644
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.6e-14 Score=107.52 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=85.7
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|..+..++...|..+++++|+++.+++.++.+....+ .++.+..+|+.+... .....++||+
T Consensus 51 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~ 129 (233)
T 2gpy_A 51 KMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGE-KLELYPLFDV 129 (233)
T ss_dssp HHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHH-HHTTSCCEEE
T ss_pred hccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH-hcccCCCccE
Confidence 3456789999999999999999988777799999999999999998865443 368899988865210 0111358999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++.... .+...++..+.++|+|||.+++.+
T Consensus 130 I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 130 LFIDAAK-----GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEEGGG-----SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred EEECCCH-----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 9986653 256789999999999999999965
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.6e-14 Score=109.93 Aligned_cols=109 Identities=11% Similarity=0.013 Sum_probs=85.3
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-CCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-ASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
.+|||||||.|..+..+++..|..+++++|+++.+++.+++++... ..++.++..|.... ....+.++||+|++...
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~--l~~~~~~~fDvIi~D~~ 168 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMV--AESFTPASRDVIIRDVF 168 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHH--HHTCCTTCEEEEEECCS
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHH--HhhccCCCCCEEEECCC
Confidence 4999999999999999998778789999999999999999986543 36899999998652 22344568999998543
Q ss_pred hcCCCcch--HHHHHHHHHHhccCCeEEEEEecC
Q psy1107 160 LSAIHPNK--FSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 160 l~~~~~~~--~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.....+.. ...+++.+.++|+|||+|++....
T Consensus 169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 22222222 267899999999999999986643
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=9.9e-14 Score=102.00 Aligned_cols=107 Identities=21% Similarity=0.296 Sum_probs=85.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCC-Cccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPH-NSVD 152 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~-~~~D 152 (218)
...++.+|||+|||+|.++..++..+ .+++++|+++.+++.++.+....+ .++.+.+.|+.+. ++. ++||
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D 102 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA-----LCKIPDID 102 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH-----HTTSCCEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh-----cccCCCCC
Confidence 45677899999999999999998877 699999999999999998754433 4788888887541 111 3799
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+|++..+++ ....++..+.++|+|||.+++.......
T Consensus 103 ~v~~~~~~~-----~~~~~l~~~~~~l~~gG~l~~~~~~~~~ 139 (192)
T 1l3i_A 103 IAVVGGSGG-----ELQEILRIIKDKLKPGGRIIVTAILLET 139 (192)
T ss_dssp EEEESCCTT-----CHHHHHHHHHHTEEEEEEEEEEECBHHH
T ss_pred EEEECCchH-----HHHHHHHHHHHhcCCCcEEEEEecCcch
Confidence 999876543 4578999999999999999998755433
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-14 Score=116.35 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=82.5
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHH-------HhCCcccC---CCceEEeccCCCcccccC
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFF-------KLNPLYDA---SKMNVFPCDVTEDDILNQ 145 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~-------~~~~~~~~---~~i~~~~~d~~~~~~~~~ 145 (218)
...++.+|||+|||+|.++..++...+..+++|+|+++.+++.| +.++...+ .++.++++|.........
T Consensus 239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~ 318 (433)
T 1u2z_A 239 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA 318 (433)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccc
Confidence 45678899999999999999999876555899999999999888 66654333 578888875432110000
Q ss_pred CCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 146 VPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 146 ~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
...++||+|++..++ +. .+....+.++.+.|||||.+++.+
T Consensus 319 ~~~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 319 ELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp HHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEee
Confidence 012479999987555 22 467778899999999999999975
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-14 Score=124.11 Aligned_cols=110 Identities=17% Similarity=0.122 Sum_probs=84.8
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||||||.|.++..+++.+ ++|+|+|+++.+++.|+.++...+ .++.|.++++.+. ......++||+|
T Consensus 63 ~~~~~~~vLDvGCG~G~~~~~la~~g--a~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~v 138 (569)
T 4azs_A 63 ALGRPLNVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEV--IAALEEGEFDLA 138 (569)
T ss_dssp HHTSCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHH--HHHCCTTSCSEE
T ss_pred hcCCCCeEEEECCCCcHHHHHHHhCC--CEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHH--hhhccCCCccEE
Confidence 34677899999999999999999987 599999999999999998876555 5799999988662 123456689999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|+.+++|++.......+..+.+.|+++|..++..
T Consensus 139 ~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 139 IGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp EEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred EECcchhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence 99999999963222223344666777777666544
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.6e-14 Score=112.46 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=82.7
Q ss_pred chHHHHHHhh-hcCCCcEEEEecCC------CchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccC
Q psy1107 66 TVNEFHEFVN-QDVGEGVLLEVGCG------VGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDV 137 (218)
Q Consensus 66 ~~~~~~~~~~-~~~~~~~vLDiGcG------~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~ 137 (218)
....+..++. ...++.+||||||| +|..+..++.. +|..+|+++|+|+.+. ....++.|+++|+
T Consensus 202 y~~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~~~rI~fv~GDa 273 (419)
T 3sso_A 202 FTPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VDELRIRTIQGDQ 273 (419)
T ss_dssp CHHHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GCBTTEEEEECCT
T ss_pred HHHHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hcCCCcEEEEecc
Confidence 3444555442 23467899999999 67777777654 5778999999999872 1235899999999
Q ss_pred CCcccccCC--CCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 138 TEDDILNQV--PHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 138 ~~~~~~~~~--~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+..+...+ ..++||+|++... +++ .+....+.+++++|||||++++.+..
T Consensus 274 ~dlpf~~~l~~~d~sFDlVisdgs-H~~--~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 274 NDAEFLDRIARRYGPFDIVIDDGS-HIN--AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp TCHHHHHHHHHHHCCEEEEEECSC-CCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred cccchhhhhhcccCCccEEEECCc-ccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 873221000 0468999998643 333 57788999999999999999998744
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.48 E-value=7.9e-14 Score=111.57 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=84.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----cCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----DASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.++.+|||||||+|..+..+++..+..+++++|+|+.+++.|++++.. ...++.++.+|+.+. ....+.++||
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~--l~~~~~~~fD 196 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF--LKNAAEGSYD 196 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH--HHTSCTTCEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH--HHhccCCCcc
Confidence 466899999999999999999876667999999999999999988653 235799999997652 1223456899
Q ss_pred EEEechhhcCCCcch--HHHHHHHHHHhccCCeEEEEE
Q psy1107 153 IATLIFVLSAIHPNK--FSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~--~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+|++.......++.. ...+++.+.++|+|||.|++.
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999854311111121 468999999999999999985
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=109.35 Aligned_cols=111 Identities=19% Similarity=0.157 Sum_probs=82.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----cCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----DASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.++.+|||+|||+|..+..+++..+..+++++|+++.+++.+++++.. ...++.++..|+... ....+.++||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~--~~~~~~~~fD 171 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAF--VRQTPDNTYD 171 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH--HHSSCTTCEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH--HHhccCCcee
Confidence 466899999999999999999876667999999999999999987631 236799999988652 1111356899
Q ss_pred EEEechhhcCCCcchH--HHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAIHPNKF--STVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~--~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|++.......+.... ..+++.+.++|+|||.+++...
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999654433322222 5789999999999999998653
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=110.02 Aligned_cols=104 Identities=19% Similarity=0.270 Sum_probs=82.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+|||+|||+|.++..+++.+ ..+|+++|++ .+++.|+++....+ .++.++.+|+.+ ..++.++||+|+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~g-~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~~D~Iv 110 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLED----VHLPFPKVDIII 110 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTT----SCCSSSCEEEEE
T ss_pred cCCCEEEEecCccHHHHHHHHHCC-CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhh----ccCCCCcccEEE
Confidence 467899999999999999988874 3499999999 58888887755433 468999999877 345556899999
Q ss_pred echhhcCCC-cchHHHHHHHHHHhccCCeEEEE
Q psy1107 156 LIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 156 ~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
+..+.+++. ......++..+.++|+|||.++.
T Consensus 111 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 975544332 34677899999999999999873
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=106.99 Aligned_cols=107 Identities=13% Similarity=0.084 Sum_probs=86.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCccc-C-CCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYD-A-SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~-~-~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....++.+|||+|||+|.++..++.. +|..+++++|+++.+++.++++.... + .++.+...|+.+ .+++.++|
T Consensus 92 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~----~~~~~~~~ 167 (258)
T 2pwy_A 92 LDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE----AELEEAAY 167 (258)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG----CCCCTTCE
T ss_pred cCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh----cCCCCCCc
Confidence 34567889999999999999999987 66679999999999999999875443 3 578999999876 24556689
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
|+|++. .+ +...++..+.++|+|||.+++.....
T Consensus 168 D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 168 DGVALD-----LM--EPWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp EEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred CEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 999973 22 44578999999999999999987543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=103.91 Aligned_cols=104 Identities=16% Similarity=0.071 Sum_probs=82.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCccc------CCCceEEeccCCCcccccCCCC
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYD------ASKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~------~~~i~~~~~d~~~~~~~~~~~~ 148 (218)
...++.+|||+|||+|..+..++.. ++..+++++|+++.+++.++++.... ..++.+...|+... ....
T Consensus 74 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~~ 149 (226)
T 1i1n_A 74 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG----YAEE 149 (226)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC----CGGG
T ss_pred hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC----cccC
Confidence 3567889999999999999999876 45569999999999999998875432 24788999988652 2234
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
++||+|++..+++++. ..+.++|+|||.+++....
T Consensus 150 ~~fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 150 APYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred CCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 5799999987776553 5678999999999997643
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=104.72 Aligned_cols=108 Identities=15% Similarity=0.088 Sum_probs=83.1
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC-----CccEEEEEeCCHHHHHHHHhCCcccC------CCceEEeccCCCccccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS-----KICYIHACDISPRAVNFFKLNPLYDA------SKMNVFPCDVTEDDILN 144 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~-----~~~~v~~~D~s~~~~~~~~~~~~~~~------~~i~~~~~d~~~~~~~~ 144 (218)
...++.+|||+|||+|.++..++... |..+++++|+++.+++.++++....+ .++.+...|+.......
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 45678899999999999999998864 45699999999999999998755432 47899999886621000
Q ss_pred CCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 145 QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
....++||+|++...++++ +..+.++|+|||.+++....
T Consensus 157 ~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEcc
Confidence 0224579999998877665 36678999999999987643
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-14 Score=111.83 Aligned_cols=108 Identities=10% Similarity=0.031 Sum_probs=84.4
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCC----C
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQV----P 147 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~----~ 147 (218)
....++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.|++++...+ .++.++.+|+.+.. ..+ .
T Consensus 56 ~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l--~~~~~~~~ 133 (242)
T 3r3h_A 56 IRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL--HSLLNEGG 133 (242)
T ss_dssp HHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH--HHHHHHHC
T ss_pred HhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH--HHHhhccC
Confidence 3445678999999999999999998764 6799999999999888887765443 47999999876521 111 1
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.++||+|++... ......+++.+.++|+|||++++.+
T Consensus 134 ~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 134 EHQFDFIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp SSCEEEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCEeEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 358999998542 3567789999999999999999865
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=108.36 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=84.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-----CCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-----ASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.++.+|||+|||+|..+..+++..+..+++++|+++.+++.+++++... ..++.++..|+.+. .....++||
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~---l~~~~~~fD 153 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF---LENVTNTYD 153 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH---HHHCCSCEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH---HHhCCCCce
Confidence 4568999999999999999998766679999999999999999876532 36789999987652 111245899
Q ss_pred EEEechhhcCCCcchH--HHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPNKF--STVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~--~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++.......+.... ..+++.+.++|+|||.+++..
T Consensus 154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 9998543222222222 689999999999999999874
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=110.03 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=88.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|.+++.++... +..+++|+|+++.+++.|+.++...+ .++.+.+.|+.+ .+.+...||
T Consensus 199 ~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~----~~~~~~~~D 274 (354)
T 3tma_A 199 ADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARH----LPRFFPEVD 274 (354)
T ss_dssp TTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGG----GGGTCCCCS
T ss_pred hCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhh----CccccCCCC
Confidence 344677899999999999999999876 77799999999999999999876544 379999999877 233344689
Q ss_pred EEEechhhcCCCc------chHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 153 IATLIFVLSAIHP------NKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 153 ~i~~~~~l~~~~~------~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+|+++..+..... .....++..+.++|+|||.+++....
T Consensus 275 ~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 275 RILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp EEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred EEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9999654332111 12467889999999999999998754
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.2e-14 Score=107.16 Aligned_cols=108 Identities=16% Similarity=0.089 Sum_probs=84.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCC-----
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQV----- 146 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~----- 146 (218)
....++.+|||+|||+|..+..++...| ..+++++|+++.+++.+++++...+ .++.++.+|+.+.. ..+
T Consensus 75 ~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l--~~l~~~~~ 152 (247)
T 1sui_A 75 LKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVL--DEMIKDEK 152 (247)
T ss_dssp HHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHH--HHHHHSGG
T ss_pred HHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHH--HHHHhccC
Confidence 3445678999999999999999998765 6799999999999999998765443 46889999876521 111
Q ss_pred CCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 147 PHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.++||+|++... ......+++.+.++|+|||++++.+
T Consensus 153 ~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 153 NHGSYDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp GTTCBSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred CCCCEEEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 1458999998532 2467789999999999999998854
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=109.94 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=80.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-----CCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-----ASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.++.+|||||||+|..+..+++..+..+++++|+++.+++.|++++... ..++.++..|+... .....++||
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~---l~~~~~~fD 183 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF---LKNHKNEFD 183 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH---HHHCTTCEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH---HHhcCCCce
Confidence 4568999999999999999998766679999999999999999886532 45789999987652 111345899
Q ss_pred EEEechhhcCCCc-ch-H-HHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHP-NK-F-STVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~-~~-~-~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++... .++.+ .. . ..+++.+.++|+|||.+++..
T Consensus 184 ~Ii~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 184 VIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EEEECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 9998543 22221 11 1 688999999999999999864
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=106.62 Aligned_cols=110 Identities=17% Similarity=0.099 Sum_probs=83.2
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----cCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----DASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.++.+|||+|||+|..+..+++..+..+++++|+++.+++.|++++.. ...++.++..|+... .....++||
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~---l~~~~~~fD 150 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH---IAKSENQYD 150 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH---HHTCCSCEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH---HhhCCCCee
Confidence 356899999999999999998875557999999999999999987632 236799999997652 112245899
Q ss_pred EEEechhhcCCCcc--hHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAIHPN--KFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|++.......++. ....+++.+.++|+|||.+++...
T Consensus 151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 99985433222111 125789999999999999998753
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-13 Score=109.80 Aligned_cols=102 Identities=22% Similarity=0.271 Sum_probs=85.2
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.+..+|||||||+|.++..+++.+|..+++++|+ +.+++.++.. .++.+..+|+.+ +++ +||+|++.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~~--~~D~v~~~ 258 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN-----ENLNFVGGDMFK-----SIP--SADAVLLK 258 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC-----SSEEEEECCTTT-----CCC--CCSEEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC-----CCcEEEeCccCC-----CCC--CceEEEEc
Confidence 4568999999999999999999988889999999 7777665532 358999998865 223 49999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccC---CeEEEEEecCC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKS---GGIILFRDYGL 192 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~---gG~li~~~~~~ 192 (218)
.++|++++.....+++++.++|+| ||.|++.++..
T Consensus 259 ~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 296 (358)
T 1zg3_A 259 WVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISI 296 (358)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence 999999755566999999999999 99999988653
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=109.02 Aligned_cols=109 Identities=14% Similarity=0.103 Sum_probs=81.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----cCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----DASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.++.+|||||||+|..+..+++..+..+++++|+++.+++.|++++.. ...++.++..|+.+. .....++||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~---l~~~~~~fD 170 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF---MKQNQDAFD 170 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH---HHTCSSCEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH---HhhCCCCce
Confidence 456899999999999999999876667999999999999999988653 246799999987541 122345899
Q ss_pred EEEechhhcCCCcc--hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPN--KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++.......++. ....+++.+.++|+|||.+++..
T Consensus 171 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 171 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 99985432211111 23468999999999999999865
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-13 Score=102.61 Aligned_cols=108 Identities=16% Similarity=0.205 Sum_probs=77.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CCC---CC
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QVP---HN 149 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~---~~ 149 (218)
..++.+|||+|||+|.++..+++. ..+|+++|+++.. ...++.++++|+.+..... .+. .+
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME----------EIAGVRFIRCDIFKETIFDDIDRALREEGIE 90 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC----------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc----------cCCCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence 457889999999999999999887 4699999998741 1247999999998743211 011 13
Q ss_pred cccEEEechhhcCCC---c------chHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 150 SVDIATLIFVLSAIH---P------NKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~---~------~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
+||+|++........ . .....++..+.++|||||.|++..+......
T Consensus 91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~ 146 (191)
T 3dou_A 91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTN 146 (191)
T ss_dssp SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHH
T ss_pred cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHH
Confidence 899999864322111 0 1235678889999999999999887766543
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=104.74 Aligned_cols=109 Identities=16% Similarity=0.106 Sum_probs=83.4
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCC--Cc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPH--NS 150 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~--~~ 150 (218)
...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.|+++....+ .++.+...|+.+.....+... ++
T Consensus 69 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~ 148 (232)
T 3cbg_A 69 SLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPE 148 (232)
T ss_dssp HHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred HhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence 344677999999999999999998765 5799999999999999998754433 368888888654210111222 58
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
||+|++... ......+++.+.++|+|||.+++.+
T Consensus 149 fD~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 149 FDLIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEEEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred cCEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 999997532 2467789999999999999999865
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=108.91 Aligned_cols=108 Identities=20% Similarity=0.265 Sum_probs=82.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-----CCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-----ASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.++.+|||+|||+|..+..+++..+..+++++|+|+.+++.++++.... ..++.++..|+.+. .....++||
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~---l~~~~~~fD 191 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF---LENVTNTYD 191 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH---HHHCCSCEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH---HhhcCCCce
Confidence 4568999999999999999998766679999999999999999886541 35789999987652 111245899
Q ss_pred EEEechhhcCCCc-chH--HHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHP-NKF--STVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~-~~~--~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++... ..+.+ ... ..+++.+.+.|+|||.+++..
T Consensus 192 vIi~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 192 VIIVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EEEEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9998542 12211 121 688999999999999999865
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-13 Score=106.57 Aligned_cols=106 Identities=18% Similarity=0.216 Sum_probs=85.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCccc----CCCceEEeccCCCcccccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYD----ASKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
....++.+|||+|||+|.++..++.. +|..+++++|+++.+++.++++.... ..++.+...|+.+ ..++.+
T Consensus 95 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~----~~~~~~ 170 (280)
T 1i9g_A 95 GDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD----SELPDG 170 (280)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG----CCCCTT
T ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh----cCCCCC
Confidence 34567789999999999999999885 56679999999999999999876543 3578999999876 344566
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+||+|++. ++ +...++..+.++|+|||.+++....
T Consensus 171 ~~D~v~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 171 SVDRAVLD-----ML--APWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred ceeEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 89999973 22 3447889999999999999997744
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=108.72 Aligned_cols=109 Identities=15% Similarity=0.093 Sum_probs=84.4
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc------cCCCceEEeccCCCcccccCCCCCcc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY------DASKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~------~~~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
.++.+|||||||+|..+..+++..+..+++++|+++.+++.|++++.. ...++.++..|+.+. .....++|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~---l~~~~~~f 152 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY---LERTEERY 152 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH---HHHCCCCE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH---HHhcCCCc
Confidence 456899999999999999999876667999999999999999987643 136799999988652 11134589
Q ss_pred cEEEechhhcC---CCcch--HHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSA---IHPNK--FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~---~~~~~--~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|++....+. -++.. ...+++.+.++|+|||.+++..
T Consensus 153 D~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99999654433 11111 3688999999999999999864
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-13 Score=109.45 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=79.9
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||||||+|.++..+++.+. .+|+++|.|+ +++.|++....++ .++.++++|+.+. .++ .++|+|
T Consensus 81 ~~~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~----~lp-e~~Dvi 153 (376)
T 4hc4_A 81 ALRGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV----ELP-EQVDAI 153 (376)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC----CCS-SCEEEE
T ss_pred hcCCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee----cCC-ccccEE
Confidence 34788999999999999988888775 3899999986 7778877655444 5799999998873 344 389999
Q ss_pred EechhhcCCC-cchHHHHHHHHHHhccCCeEEEE
Q psy1107 155 TLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 155 ~~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
++...-..+. ......++....++|+|||.++.
T Consensus 154 vsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 154 VSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp ECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred EeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 9854433332 23677888888899999998774
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-13 Score=106.40 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=84.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
...++.+|||+|||+|.++..++.. +|..+++++|+++.+++.++++....+ .++.+...|+.+. ++.++||
T Consensus 109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~D 183 (277)
T 1o54_A 109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-----FDEKDVD 183 (277)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-----CSCCSEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-----ccCCccC
Confidence 4456789999999999999999987 667899999999999999998865443 4688888888652 4556899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+|++. .+ +...++..+.++|+|||.+++....
T Consensus 184 ~V~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 184 ALFLD-----VP--DPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp EEEEC-----CS--CGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred EEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99973 22 4457889999999999999998753
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.2e-13 Score=106.23 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=84.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|..+..++... +..+++++|+++.+++.++.+....+ .++.+++.|+.... . ..++||
T Consensus 114 l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~---~-~~~~fD 189 (315)
T 1ixk_A 114 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG---E-LNVEFD 189 (315)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG---G-GCCCEE
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcc---c-ccccCC
Confidence 345677899999999999999999874 34699999999999999998876544 47899999887632 1 245799
Q ss_pred EEEechh------hcCCC-------cc-------hHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFV------LSAIH-------PN-------KFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~------l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|++... +.+.+ ++ ....++..+.++|||||.|++...
T Consensus 190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 9998432 22211 01 125889999999999999999764
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-13 Score=103.22 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=82.1
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCC------ccEEEEEeCCHHHHHHHHhCCccc------CCCceEEeccCCCcccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSK------ICYIHACDISPRAVNFFKLNPLYD------ASKMNVFPCDVTEDDIL 143 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~------~~~v~~~D~s~~~~~~~~~~~~~~------~~~i~~~~~d~~~~~~~ 143 (218)
...++.+|||+|||+|.++..++.... ..+++++|+++.+++.++++.... ..++.+...|+..
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~---- 156 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK---- 156 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG----
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc----
Confidence 456778999999999999999987543 249999999999999999875432 2478899998865
Q ss_pred cCCCC-CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 144 NQVPH-NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 144 ~~~~~-~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.++. ++||+|++..++++++ ..+.+.|+|||.+++....
T Consensus 157 -~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 157 -GYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp -CCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred -CCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEec
Confidence 2222 5899999988887764 5678999999999997754
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-13 Score=107.08 Aligned_cols=107 Identities=13% Similarity=0.059 Sum_probs=80.4
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----------cCCCceEEeccCCCcccccCC
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----------DASKMNVFPCDVTEDDILNQV 146 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----------~~~~i~~~~~d~~~~~~~~~~ 146 (218)
.++.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++.. ...++.++..|+.+. ...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~--l~~- 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF--IKN- 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH--HHH-
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHH--hcc-
Confidence 45689999999999999999987 667999999999999999987611 235788999887542 111
Q ss_pred CCCcccEEEechhhcCCCcch--HHHHHHHHHHhccCCeEEEEEe
Q psy1107 147 PHNSVDIATLIFVLSAIHPNK--FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~~~~--~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.++||+|++.......++.. ...+++.+.++|+|||.+++..
T Consensus 150 -~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 150 -NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp -CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 45899999854422111122 2678999999999999999864
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-13 Score=104.15 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=80.8
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeC-CHHHHHHHHhCC-----cccC------CCceEEeccCCCcc--cc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDI-SPRAVNFFKLNP-----LYDA------SKMNVFPCDVTEDD--IL 143 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~-s~~~~~~~~~~~-----~~~~------~~i~~~~~d~~~~~--~~ 143 (218)
.++.+|||+|||+|.++..++..+. .+|+++|+ ++.+++.++.+. ...+ .++.+...|..+.. +.
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~-~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGA-DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTC-SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCC-CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 4678999999999999998887653 48999999 899999999876 3222 25777766654421 10
Q ss_pred cCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhcc---C--CeEEEEE
Q psy1107 144 NQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLK---S--GGIILFR 188 (218)
Q Consensus 144 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk---~--gG~li~~ 188 (218)
..++.++||+|++..++++. .+...++..+.++|+ | ||.+++.
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 00134589999998888875 578899999999999 9 9987664
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-13 Score=101.84 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=84.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcc-----------
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDD----------- 141 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~----------- 141 (218)
...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.++++....+ .++.+..+|+.+..
T Consensus 57 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 57 KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS 136 (239)
T ss_dssp HHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred HhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence 345678999999999999999998865 5799999999999999998765433 34888888875421
Q ss_pred cccCCCC--CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 142 ILNQVPH--NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 142 ~~~~~~~--~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+...++. ++||+|++... ......+++.+.++|+|||.+++.+
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 1112333 68999998643 2456788999999999999999865
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-13 Score=103.45 Aligned_cols=110 Identities=19% Similarity=0.128 Sum_probs=84.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcc--cc-cCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDD--IL-NQVPH 148 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~--~~-~~~~~ 148 (218)
....++.+|||+|||+|..+..++...| ..+++++|+++.+++.+++++...+ .++.++.+|+.+.. +. ...+.
T Consensus 66 ~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~ 145 (237)
T 3c3y_A 66 LKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESE 145 (237)
T ss_dssp HHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCT
T ss_pred HHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCC
Confidence 3445678999999999999999998765 6799999999999999998765443 36889998876521 00 00124
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++||+|++.. .......+++.+.++|+|||.+++.+
T Consensus 146 ~~fD~I~~d~-----~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 146 GSYDFGFVDA-----DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp TCEEEEEECS-----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCcCEEEECC-----chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 5899999752 23467889999999999999988854
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-13 Score=104.87 Aligned_cols=117 Identities=15% Similarity=0.023 Sum_probs=86.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCc-cEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~-~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|..+..++...++ .+++++|+++.+++.++++....+ .++.+.+.|+...........++||
T Consensus 79 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD 158 (274)
T 3ajd_A 79 LNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFD 158 (274)
T ss_dssp HCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCC
Confidence 34567889999999999999999886544 699999999999999998866544 4789999988652110000245799
Q ss_pred EEEechhhcCCC----------------cchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 153 IATLIFVLSAIH----------------PNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 153 ~i~~~~~l~~~~----------------~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+|++........ ......++..+.++|||||.+++....
T Consensus 159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 999863222110 024578999999999999999997643
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=113.88 Aligned_cols=104 Identities=21% Similarity=0.240 Sum_probs=83.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..+++. +..+|+++|+|+ +++.|+++....+ .++.++.+|+.+. .++ ++||+|
T Consensus 156 ~~~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~----~~~-~~fD~I 228 (480)
T 3b3j_A 156 DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV----SLP-EQVDII 228 (480)
T ss_dssp GTTTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC----CCS-SCEEEE
T ss_pred hcCCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC----ccC-CCeEEE
Confidence 346789999999999999988875 446999999998 8888887755443 5799999998762 333 479999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
++..+++++..+.....+..+.++|+|||.+++
T Consensus 229 vs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 229 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp ECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred EEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 998776666545666777888999999999985
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.8e-13 Score=107.99 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=81.2
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCccc------------CCCceEEeccCCCccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYD------------ASKMNVFPCDVTEDDI 142 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~------------~~~i~~~~~d~~~~~~ 142 (218)
...++.+|||+|||+|.++..++.. ++..+++++|+++.+++.|+++.... ..++.+...|+.+..
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~- 180 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT- 180 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc-
Confidence 4567889999999999999999987 67679999999999999999875431 257999999987631
Q ss_pred ccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 143 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
..++.++||+|++... ....++..+.++|+|||.|++.....
T Consensus 181 -~~~~~~~fD~V~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~~~ 222 (336)
T 2b25_A 181 -EDIKSLTFDAVALDML-------NPHVTLPVFYPHLKHGGVCAVYVVNI 222 (336)
T ss_dssp --------EEEEEECSS-------STTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred -cccCCCCeeEEEECCC-------CHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 1345568999998421 22237899999999999999877543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-13 Score=100.69 Aligned_cols=103 Identities=14% Similarity=0.154 Sum_probs=84.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||.|.++..+. +...|+++|+++.+++.++.+....+.+..+..+|... .+. .+++|+|++.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~----~~~-~~~~DvvLll 175 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLC----APP-AEAGDLALIF 175 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTT----SCC-CCBCSEEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeccc----CCC-CCCcchHHHH
Confidence 678899999999999998887 56799999999999999999876666788899999876 333 4489999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
-+++++........+ .+...|+++|.++-..
T Consensus 176 k~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 176 KLLPLLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp SCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HHHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 888888644444555 7778999999776644
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-13 Score=105.65 Aligned_cols=109 Identities=12% Similarity=0.103 Sum_probs=81.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----cCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----DASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.++.+|||+|||+|..+..+++..+..+++++|+++.+++.+++++.. ...++.++..|+... .....++||
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~---l~~~~~~fD 165 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY---VRKFKNEFD 165 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH---GGGCSSCEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH---HhhCCCCce
Confidence 456899999999999999999875667999999999999999988642 136799999987552 112245899
Q ss_pred EEEechhhcCCCc-c--hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHP-N--KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~-~--~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++.....+..+ . ....+++.+.++|+|||.+++..
T Consensus 166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9998532110211 0 22678999999999999999864
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-13 Score=102.32 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=84.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCC----
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVP---- 147 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~---- 147 (218)
....++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...+ .++.++..|+.+.. ..++
T Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~~~~~ 142 (229)
T 2avd_A 65 ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL--DELLAAGE 142 (229)
T ss_dssp HHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHH--HHHHHTTC
T ss_pred HHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHH--HHHHhcCC
Confidence 3445778999999999999999998755 5799999999999999998765433 47899999875421 1111
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.++||+|++... ......+++.+.++|+|||.+++.+
T Consensus 143 ~~~~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 143 AGTFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp TTCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 158999998432 3467789999999999999999865
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-13 Score=103.50 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=80.2
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcc---cE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSV---DI 153 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~---D~ 153 (218)
++.+|||+|||+|.++..++.. |..+++++|+|+.+++.|+.+....+ .++.++++|+.+. ++ ++| |+
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-----~~-~~f~~~D~ 195 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-----FK-EKFASIEM 195 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-----GG-GGTTTCCE
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-----cc-cccCCCCE
Confidence 5679999999999999999988 77899999999999999999876544 2499999998762 11 368 99
Q ss_pred EEechhhc-----------CCCc------chHHHHHHHHH-HhccCCeEEEEEe
Q psy1107 154 ATLIFVLS-----------AIHP------NKFSTVVKNLF-IMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~-----------~~~~------~~~~~~l~~~~-~~Lk~gG~li~~~ 189 (218)
|+++-... |-|. .+...+++.+. +.|+|||.+++..
T Consensus 196 IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 196 ILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp EEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred EEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 99962111 1110 11226889999 9999999998844
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.8e-13 Score=107.67 Aligned_cols=110 Identities=11% Similarity=-0.062 Sum_probs=80.8
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-C--CceEEeccCCCcccccCCCCCcccEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-S--KMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~--~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+++.+++++...+ . ++.+++.|+.+..........+||+|
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 4567999999999999999998763 99999999999999999866544 2 48899998865210000013479999
Q ss_pred EechhhcCCC--------cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIH--------PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~--------~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++.-...... ..+...++..+.++|+|||.+++..
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~ 272 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 272 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 9843211110 1356788999999999999977754
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-12 Score=106.13 Aligned_cols=117 Identities=13% Similarity=0.079 Sum_probs=88.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCc-cEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~-~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|..+..++...++ .+++++|+++.+++.++.+....+ .++.+.+.|+.... ..++.++||
T Consensus 255 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~--~~~~~~~fD 332 (450)
T 2yxl_A 255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAP--EIIGEEVAD 332 (450)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCS--SSSCSSCEE
T ss_pred cCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcc--hhhccCCCC
Confidence 34567789999999999999999987554 699999999999999998866544 47899999987621 124446899
Q ss_pred EEEec------hhhcCCCc-------ch-------HHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 153 IATLI------FVLSAIHP-------NK-------FSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 153 ~i~~~------~~l~~~~~-------~~-------~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+|++. .+++..|. ++ ...++..+.++|||||.|++.+....
T Consensus 333 ~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp EEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred EEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99962 23333321 11 25789999999999999998775443
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=98.99 Aligned_cols=103 Identities=16% Similarity=0.103 Sum_probs=82.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|.++..++.. ..+++++|+++.+++.++++....+ .++.+...|+.+. ..+.++||+
T Consensus 88 ~~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~ 161 (248)
T 2yvl_A 88 NLNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA----EVPEGIFHA 161 (248)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTS----CCCTTCBSE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhc----ccCCCcccE
Confidence 3457789999999999999999887 3699999999999999998754433 5788888888662 114458999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|++. .+ +...++..+.++|+|||.+++....
T Consensus 162 v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 162 AFVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp EEEC-----SS--CGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred EEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9973 22 4457889999999999999998754
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=95.58 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=77.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCc---------cEEEEEeCCHHHHHHHHhCCcccCCCceEE-eccCCCcccc---
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKI---------CYIHACDISPRAVNFFKLNPLYDASKMNVF-PCDVTEDDIL--- 143 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~---------~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~-~~d~~~~~~~--- 143 (218)
..++.+|||+|||+|.++..++...+. .+++++|+++.. ...++.+. ..|+......
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~~~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------PLEGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------CCTTCEEECSCCTTSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------cCCCCeEEEeccCCCHHHHHHH
Confidence 456789999999999999999987543 699999999832 11357788 8887653211
Q ss_pred -cCCCCCcccEEEechhhcCCCc--chH-------HHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 144 -NQVPHNSVDIATLIFVLSAIHP--NKF-------STVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 144 -~~~~~~~~D~i~~~~~l~~~~~--~~~-------~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
..++..+||+|++...++.... .+. ..++..+.++|+|||.|++..+....
T Consensus 90 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 150 (196)
T 2nyu_A 90 LEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ 150 (196)
T ss_dssp HHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG
T ss_pred HHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 1133458999998654433210 111 47889999999999999998876554
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=102.28 Aligned_cols=100 Identities=12% Similarity=0.201 Sum_probs=71.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCce-EEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMN-VFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.+.++. .++. +...++.... ...++..+||+|++
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga-~~V~aVDvs~~mL~~a~r~~----~rv~~~~~~ni~~l~-~~~l~~~~fD~v~~ 157 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGA-KLVYAVDVGTNQLVWKLRQD----DRVRSMEQYNFRYAE-PVDFTEGLPSFASI 157 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSSSCSCHHHHTC----TTEEEECSCCGGGCC-GGGCTTCCCSEEEE
T ss_pred ccccEEEecCCCccHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhC----cccceecccCceecc-hhhCCCCCCCEEEE
Confidence 3567999999999999998887743 49999999999998855431 1222 2223332211 12244446999998
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
..+++++ ..++..+.++|+|||.+++.
T Consensus 158 d~sf~sl-----~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 158 DVSFISL-----NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp CCSSSCG-----GGTHHHHHHHSCTTCEEEEE
T ss_pred EeeHhhH-----HHHHHHHHHHcCcCCEEEEE
Confidence 7666544 57899999999999999997
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.5e-12 Score=94.73 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=72.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+ ..+++++|+|+.+++.++.+.. ++.++++|+.+. + ++||+|++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~d~~~~------~-~~~D~v~~ 116 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEI------S-GKYDTWIM 116 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGGC------C-CCEEEEEE
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhcC----CCEEEECcHHHC------C-CCeeEEEE
Confidence 3467899999999999999998773 3479999999999999998765 788999998661 2 48999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
..++++........++..+.+.+ |+++++
T Consensus 117 ~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~ 145 (200)
T 1ne2_A 117 NPPFGSVVKHSDRAFIDKAFETS--MWIYSI 145 (200)
T ss_dssp CCCC-------CHHHHHHHHHHE--EEEEEE
T ss_pred CCCchhccCchhHHHHHHHHHhc--CcEEEE
Confidence 98888775433457888888888 443333
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-12 Score=100.10 Aligned_cols=107 Identities=15% Similarity=0.278 Sum_probs=84.1
Q ss_pred HhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCc
Q psy1107 73 FVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 73 ~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
+.....++.+|||+|||+|.+++.++..+. .+|+++|+|+.+++.++.++..++ .++.++++|..+. .+.+.
T Consensus 119 i~~~~~~g~~VlD~~aG~G~~~i~~a~~g~-~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~-----~~~~~ 192 (278)
T 3k6r_A 119 MAKVAKPDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF-----PGENI 192 (278)
T ss_dssp HHHHCCTTCEEEETTCTTTTTTHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC-----CCCSC
T ss_pred HHHhcCCCCEEEEecCcCcHHHHHHHHhcC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHh-----ccccC
Confidence 334467889999999999999999998763 589999999999999999877655 4688999998662 23458
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
||.|++.. | .....++..+.++||+||.+.+.++.
T Consensus 193 ~D~Vi~~~-----p-~~~~~~l~~a~~~lk~gG~ih~~~~~ 227 (278)
T 3k6r_A 193 ADRILMGY-----V-VRTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp EEEEEECC-----C-SSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred CCEEEECC-----C-CcHHHHHHHHHHHcCCCCEEEEEeee
Confidence 99998642 2 23346788889999999998876543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=4e-12 Score=105.25 Aligned_cols=115 Identities=16% Similarity=0.094 Sum_probs=87.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||+|..+..++...++.+++++|+++.+++.++.+....+.++.+.+.|+.... ..++.++||+|
T Consensus 242 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~--~~~~~~~fD~V 319 (429)
T 1sqg_A 242 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPS--QWCGEQQFDRI 319 (429)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTH--HHHTTCCEEEE
T ss_pred cCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhch--hhcccCCCCEE
Confidence 3456778999999999999999998877679999999999999999887655556788888887632 11344689999
Q ss_pred Eec------hhhcCCCc-------ch-------HHHHHHHHHHhccCCeEEEEEecC
Q psy1107 155 TLI------FVLSAIHP-------NK-------FSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 155 ~~~------~~l~~~~~-------~~-------~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
++. .++++.+. ++ +..++..+.++|||||.|++.+..
T Consensus 320 l~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 320 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred EEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 962 23333321 11 257899999999999999997633
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.3e-13 Score=103.43 Aligned_cols=82 Identities=12% Similarity=0.018 Sum_probs=63.2
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCC---CCcccE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVP---HNSVDI 153 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~---~~~~D~ 153 (218)
++.+|||+|||+|.++..++...+..+++++|+|+.+++.|+.+....+ .++.+++.|+.+.. ...++ +++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL-MDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS-TTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhh-hhhhhcccCCcccE
Confidence 5679999999999999999887655799999999999999998865444 35899999876521 11333 258999
Q ss_pred EEechhhc
Q psy1107 154 ATLIFVLS 161 (218)
Q Consensus 154 i~~~~~l~ 161 (218)
|++...++
T Consensus 144 i~~npp~~ 151 (254)
T 2h00_A 144 CMCNPPFF 151 (254)
T ss_dssp EEECCCCC
T ss_pred EEECCCCc
Confidence 99975433
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.2e-12 Score=103.69 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=81.2
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..+. .|+++|+|+.+++.+++++..++....+.+.|+.+. ...... .||+|++.
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~--l~~~~~-~fD~Ii~d 287 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPT--LRGLEG-PFHHVLLD 287 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHH--HHTCCC-CEEEEEEC
T ss_pred cCCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHH--HHHhcC-CCCEEEEC
Confidence 3488999999999999999998764 599999999999999998765554445667777652 112233 49999985
Q ss_pred hhhcCCCc-------chHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 158 FVLSAIHP-------NKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 158 ~~l~~~~~-------~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
.....-.. .....++..+.++|+|||.|++.+....
T Consensus 288 pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 288 PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 32111000 2456788899999999999997664433
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=91.99 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=79.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+. .+++++|+++.+++.++.+....+.++.++++|+.+. + .+||+|++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~------~-~~~D~v~~ 118 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF------N-SRVDIVIM 118 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC------C-CCCSEEEE
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHc------C-CCCCEEEE
Confidence 34678999999999999999988754 3899999999999999998765545789999988662 2 37999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
...++.........+++.+.+++ ||.+++
T Consensus 119 ~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~ 147 (207)
T 1wy7_A 119 NPPFGSQRKHADRPFLLKAFEIS--DVVYSI 147 (207)
T ss_dssp CCCCSSSSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred cCCCccccCCchHHHHHHHHHhc--CcEEEE
Confidence 87766654344557788888887 554443
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-12 Score=104.22 Aligned_cols=108 Identities=13% Similarity=0.205 Sum_probs=83.6
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCc-----cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKI-----CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~-----~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
..++.+|||+|||+|.++..+++..+. .+++|+|+++.+++.|+.+....+.++.+.++|.... .+..+|
T Consensus 128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-----~~~~~f 202 (344)
T 2f8l_A 128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-----LLVDPV 202 (344)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-----CCCCCE
T ss_pred CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-----cccCCc
Confidence 345689999999999999998876542 6899999999999999987654444688888887652 234589
Q ss_pred cEEEechhhcCCCcch---------------H-HHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNK---------------F-STVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~---------------~-~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|+++-.+.+++.++ . ..++..+.+.|+|||.+++..
T Consensus 203 D~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 203 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999987655443211 1 258899999999999998876
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.6e-12 Score=103.09 Aligned_cols=105 Identities=13% Similarity=0.039 Sum_probs=81.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccC-CCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQ-VPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~-~~~~~~D~i~ 155 (218)
.++.+|||+| |+|.++..++..++..+++++|+++.+++.|++++...+ .++.++.+|+.+. .+ ...++||+|+
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~---l~~~~~~~fD~Vi 246 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKP---LPDYALHKFDTFI 246 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSC---CCTTTSSCBSEEE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhh---chhhccCCccEEE
Confidence 3578999999 999999999888776799999999999999999866544 3799999998761 11 1235899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEE-EEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGII-LFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l-i~~~ 189 (218)
+..+++.. ....++..+.++|+|||.+ ++..
T Consensus 247 ~~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 247 TDPPETLE---AIRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp ECCCSSHH---HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred ECCCCchH---HHHHHHHHHHHHcccCCeEEEEEE
Confidence 87543322 3578899999999999944 4443
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-12 Score=106.43 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=83.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-C--CceEEeccCCCcccccCCCCCcccEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-S--KMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~--~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
.++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|++++..++ . ++.++++|+.+..-.......+||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga-~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 5678999999999999999987652 389999999999999999876554 2 78999999865210001113479999
Q ss_pred Eechhh-----cCCC--cchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 155 TLIFVL-----SAIH--PNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 155 ~~~~~l-----~~~~--~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
++.-.. .... ......++..+.++|+|||.|++.....
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 985332 1221 1234567788899999999999977543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.2e-12 Score=98.33 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=77.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----cCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----DASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.++.+|||||||+|..+..+++. + .+++++|+++.+++.|+++... ...++.++..|.... . ++||
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~-----~--~~fD 141 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-----I--KKYD 141 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC-----C--CCEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH-----H--hhCC
Confidence 35679999999999999999887 6 7999999999999999987643 135788888887651 1 5899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++. .+ ++..+++.+.+.|+|||.+++..
T Consensus 142 ~Ii~d-----~~--dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 142 LIFCL-----QE--PDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp EEEES-----SC--CCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEEC-----CC--ChHHHHHHHHHhcCCCcEEEEEc
Confidence 99985 21 23348999999999999999854
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-12 Score=100.65 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=74.9
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc---ccCCCceEE--eccCCCcccccCCCCCcc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL---YDASKMNVF--PCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~---~~~~~i~~~--~~d~~~~~~~~~~~~~~~ 151 (218)
..++.+|||+|||+|.++..+++. .+|+|+|+++ ++..++.... ..+.++.++ ++|+.. ++.++|
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~------l~~~~f 149 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTK------MEPFQA 149 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGG------CCCCCC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhh------CCCCCc
Confidence 456789999999999999999876 4899999998 4332222211 111267888 888765 235689
Q ss_pred cEEEechhhcCCCc---chH--HHHHHHHHHhccCCe--EEEEEecCCCc
Q psy1107 152 DIATLIFVLSAIHP---NKF--STVVKNLFIMLKSGG--IILFRDYGLHD 194 (218)
Q Consensus 152 D~i~~~~~l~~~~~---~~~--~~~l~~~~~~Lk~gG--~li~~~~~~~~ 194 (218)
|+|+|..+ .+.+. +.. ..++..+.++|+||| .|++..+.+..
T Consensus 150 D~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~ 198 (276)
T 2wa2_A 150 DTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYS 198 (276)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCS
T ss_pred CEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCc
Confidence 99999766 33221 111 137888999999999 99997776443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-12 Score=104.13 Aligned_cols=116 Identities=17% Similarity=0.111 Sum_probs=85.6
Q ss_pred HhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcc
Q psy1107 73 FVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 73 ~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
.+... ++.+|||+|||+|.++..++.. ..+++++|+|+.+++.++.++..++ .++.+++.|+.+..........+|
T Consensus 204 ~~~~~-~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~f 280 (382)
T 1wxx_A 204 YMERF-RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERF 280 (382)
T ss_dssp HGGGC-CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred HHHhc-CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCe
Confidence 33444 7789999999999999999887 3599999999999999999876554 458999998865211000113589
Q ss_pred cEEEechhhcCCCc-------chHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 152 DIATLIFVLSAIHP-------NKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 152 D~i~~~~~l~~~~~-------~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|+|++.-.....+. .....++..+.++|+|||.|++....
T Consensus 281 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 281 DLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp EEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred eEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 99998432211111 34567889999999999999998754
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-12 Score=103.83 Aligned_cols=115 Identities=16% Similarity=0.063 Sum_probs=85.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC---CceEEeccCCCcccccCCCCCcccE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS---KMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~---~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
..++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++++..++. ++.++..|+.+..........+||+
T Consensus 218 ~~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~ 296 (396)
T 3c0k_A 218 YVENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_dssp HCTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCE
Confidence 3577899999999999999999875 34999999999999999998765543 7899999986621100001347999
Q ss_pred EEechhhcCCC-------cchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 154 ATLIFVLSAIH-------PNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 154 i~~~~~l~~~~-------~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
|++.-.....+ ......++..+.++|+|||.+++.....
T Consensus 297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99853211110 1467788999999999999999977443
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.7e-12 Score=94.88 Aligned_cols=99 Identities=10% Similarity=0.137 Sum_probs=66.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc----CCCceEEeccCCCcccccCCCCCccc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD----ASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
..++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.++++.... ..++.+... ..++...+|
T Consensus 35 ~~~g~~VLDiGcGtG~~t~~la~~g~-~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~d 105 (232)
T 3opn_A 35 EINGKTCLDIGSSTGGFTDVMLQNGA-KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVL--------ADFEQGRPS 105 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCG--------GGCCSCCCS
T ss_pred CCCCCEEEEEccCCCHHHHHHHhcCC-CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCH--------hHcCcCCCC
Confidence 34567999999999999999988753 39999999999999987753311 012222221 111111234
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+.+..++.++ ..++..+.++|||||.+++..
T Consensus 106 ~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 106 FTSIDVSFISL-----DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp EEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE
Confidence 44443333332 568999999999999999863
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.9e-12 Score=103.72 Aligned_cols=112 Identities=21% Similarity=0.132 Sum_probs=83.8
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC--CceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS--KMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~--~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
++.+|||+|||+|.++..++..+ ..+++++|+|+.+++.++.++..++. ++.+++.|+.+..........+||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g-~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 77899999999999999999874 34999999999999999998765542 7899999886521100112458999998
Q ss_pred chhhcCCCc-------chHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 157 IFVLSAIHP-------NKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 157 ~~~l~~~~~-------~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.......+. .....++..+.++|+|||.+++.+..
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 532211111 34667889999999999999887654
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-12 Score=99.40 Aligned_cols=106 Identities=11% Similarity=0.017 Sum_probs=74.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc---ccCCCceEE--eccCCCcccccCCCCCcc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL---YDASKMNVF--PCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~---~~~~~i~~~--~~d~~~~~~~~~~~~~~~ 151 (218)
..++.+|||+|||+|.++..+++. .+|+++|+++ ++..+..... ..+.++.++ ++|+.+ ++..+|
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~------l~~~~f 141 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHT------LPVERT 141 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTT------SCCCCC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhH------CCCCCC
Confidence 457789999999999999988876 4899999998 4322221110 111267888 888866 235689
Q ss_pred cEEEechhhcCCCc---chH--HHHHHHHHHhccCCe--EEEEEecCCC
Q psy1107 152 DIATLIFVLSAIHP---NKF--STVVKNLFIMLKSGG--IILFRDYGLH 193 (218)
Q Consensus 152 D~i~~~~~l~~~~~---~~~--~~~l~~~~~~Lk~gG--~li~~~~~~~ 193 (218)
|+|+|..+ ++.+. +.. ..++..+.++|+||| .|++..+...
T Consensus 142 D~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~ 189 (265)
T 2oxt_A 142 DVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPY 189 (265)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTT
T ss_pred cEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCC
Confidence 99999766 33321 111 137888999999999 9999877633
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-12 Score=104.93 Aligned_cols=112 Identities=11% Similarity=0.044 Sum_probs=83.4
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||+|||+|..+..++...+ ...|+++|+++.+++.+++++...+..+.+.+.|+.... ....++||+
T Consensus 97 L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~---~~~~~~FD~ 173 (464)
T 3m6w_A 97 LDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALA---EAFGTYFHR 173 (464)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHH---HHHCSCEEE
T ss_pred cCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhh---hhccccCCE
Confidence 3456788999999999999999997743 369999999999999999987665533888888876521 112458999
Q ss_pred EEech------hhcCCC-------cc-------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIF------VLSAIH-------PN-------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~------~l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++.. ++...+ ++ .+..++..+.++|||||.|+++.
T Consensus 174 Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT 229 (464)
T 3m6w_A 174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST 229 (464)
T ss_dssp EEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99621 222222 11 13678999999999999999865
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=100.67 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=81.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.+++.++..++..+++|+|+|+.+++.|+.++...+ .++.+.++|+.+ .+.+.++||+|
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~----~~~~~~~fD~I 290 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ----LSQYVDSVDFA 290 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGG----GGGTCSCEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhh----CCcccCCcCEE
Confidence 567889999999999999999988765689999999999999999876555 479999999987 34445689999
Q ss_pred EechhhcCCC------cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIH------PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+++..+.... .+....+++.+.++| +|.+++..
T Consensus 291 i~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~ 329 (373)
T 3tm4_A 291 ISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT 329 (373)
T ss_dssp EEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEE
T ss_pred EECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 9965433211 122367788888888 44444444
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.1e-12 Score=110.29 Aligned_cols=116 Identities=13% Similarity=0.097 Sum_probs=86.8
Q ss_pred HHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCC
Q psy1107 72 EFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 72 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~ 148 (218)
..+....++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.+++++..++ .++.+++.|+.+. .....
T Consensus 532 ~~l~~~~~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~---l~~~~ 607 (703)
T 3v97_A 532 RMLGQMSKGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAW---LREAN 607 (703)
T ss_dssp HHHHHHCTTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHH---HHHCC
T ss_pred HHHHHhcCCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH---HHhcC
Confidence 3334445788999999999999999987664 479999999999999999876554 3689999998662 12234
Q ss_pred CcccEEEechhhcC--------CC-cchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 149 NSVDIATLIFVLSA--------IH-PNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 149 ~~~D~i~~~~~l~~--------~~-~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
++||+|++.-.... +. ..+...++..+.++|+|||.|++..-.
T Consensus 608 ~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 608 EQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 58999998542110 00 135667899999999999999987633
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=102.35 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=82.9
Q ss_pred CCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
++.+|||+|||+|..+..++... +...|+++|+++.+++.+++++...+ .++.+.+.|+.... ....++||.|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~---~~~~~~fD~Il~ 193 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFG---AAVPEMFDAILL 193 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHH---HHSTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhh---hhccccCCEEEE
Confidence 78899999999999999999874 34699999999999999999876544 47889999887621 112358999998
Q ss_pred c------hhhcCCC-------cc-------hHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 I------FVLSAIH-------PN-------KFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~------~~l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
. .++...+ ++ ....++..+.++|||||.|+++..
T Consensus 194 D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 194 DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 3 2232222 11 135788999999999999998753
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-12 Score=94.20 Aligned_cols=92 Identities=11% Similarity=0.045 Sum_probs=73.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||. +++|+|+.+++.++++.. .++.+.+.|+.+... .++++++||+|++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~---~~~~~~~~d~~~~~~-~~~~~~~fD~V~~ 69 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG---NEGRVSVENIKQLLQ-SAHKESSFDIILS 69 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT---TTSEEEEEEGGGGGG-GCCCSSCEEEEEE
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc---cCcEEEEechhcCcc-ccCCCCCEeEEEE
Confidence 56788999999986 138999999999998753 258999999876321 1236779999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..+++|++ .+...++++++++|||||.|++.+
T Consensus 70 ~~~l~~~~-~~~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 70 GLVPGSTT-LHSAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp CCSTTCCC-CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CChhhhcc-cCHHHHHHHHHHHCCCCEEEEEEc
Confidence 99999983 245789999999999999999954
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.1e-12 Score=99.92 Aligned_cols=101 Identities=22% Similarity=0.297 Sum_probs=81.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++.. +. + ..+++++|+|+.+++.+++++..++ .++.+++.|+.+. . ++||+|
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~-~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~----~---~~fD~V 262 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CK-N-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV----D---VKGNRV 262 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TT-T-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC----C---CCEEEE
T ss_pred cCCCCEEEEccCccCHHHHh-cc-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh----c---CCCcEE
Confidence 35788999999999999999 77 3 4699999999999999999876554 4789999998762 1 589999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
++.. |.....++..+.++|+|||.+++.++...
T Consensus 263 i~dp------P~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 263 IMNL------PKFAHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp EECC------TTTGGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred EECC------cHhHHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 9842 22234788889999999999999776554
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.3e-12 Score=103.81 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=83.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|..+..++...+ ...|+++|+++.+++.+++++...+ .++.+.+.|..... ....++||
T Consensus 101 L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~---~~~~~~FD 177 (456)
T 3m4x_A 101 AAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV---PHFSGFFD 177 (456)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH---HHHTTCEE
T ss_pred cCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh---hhccccCC
Confidence 4456788999999999999999987633 3699999999999999999876555 56888888876521 11235899
Q ss_pred EEEechh------hcCCC-------c-------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFV------LSAIH-------P-------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~------l~~~~-------~-------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++... +..-+ + .....++..+.++|||||.|+++.
T Consensus 178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 234 (456)
T 3m4x_A 178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234 (456)
T ss_dssp EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9997432 11111 0 112378899999999999999865
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=97.48 Aligned_cols=105 Identities=13% Similarity=0.061 Sum_probs=71.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeC----CHHHHHHHHhCCccc-CCCceEEec-cCCCcccccCCCCCc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDI----SPRAVNFFKLNPLYD-ASKMNVFPC-DVTEDDILNQVPHNS 150 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~----s~~~~~~~~~~~~~~-~~~i~~~~~-d~~~~~~~~~~~~~~ 150 (218)
..++.+|||+|||+|.++..+++. .+|+++|+ ++.+++.+ ..... ..++.+.+. |+.. ++..+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~------l~~~~ 148 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFF------IPPER 148 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTT------SCCCC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEecccccc------CCcCC
Confidence 456789999999999999999877 37999999 55443211 11111 145788877 7754 22458
Q ss_pred ccEEEechhhcCCC--cch--HHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 151 VDIATLIFVLSAIH--PNK--FSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 151 ~D~i~~~~~l~~~~--~~~--~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
||+|+|...+.... .+. ...++..+.++|||||.|++..+..
T Consensus 149 fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 149 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 99999976543111 111 1147888899999999999876655
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=96.36 Aligned_cols=100 Identities=18% Similarity=0.118 Sum_probs=75.6
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|+.++...+..+.|...|+.+. .+. +||+|++
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~--~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~-----~~~-~fD~Vv~ 359 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRG--FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREV-----SVK-GFDTVIV 359 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTC-----CCT-TCSEEEE
T ss_pred cCCCCEEEEeeccchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHc-----Ccc-CCCEEEE
Confidence 5677899999999999999998865 4999999999999999998765443388999998762 122 7999998
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.-.-..+ ...+++.+. .|+|+|++++..
T Consensus 360 dPPr~g~----~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 360 DPPRAGL----HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp CCCTTCS----CHHHHHHHH-HHCCSEEEEEES
T ss_pred cCCccch----HHHHHHHHH-hcCCCcEEEEEC
Confidence 5332222 123445444 589999999875
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-11 Score=99.20 Aligned_cols=102 Identities=14% Similarity=0.050 Sum_probs=79.5
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc---------------C-CCceEEeccCCCccc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD---------------A-SKMNVFPCDVTEDDI 142 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~---------------~-~~i~~~~~d~~~~~~ 142 (218)
++.+|||+|||+|..++.++...+..+|+++|+++.+++.++++...+ + .++.+++.|+....
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~- 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM- 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH-
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH-
Confidence 678999999999999999998755568999999999999999987655 4 24888888876521
Q ss_pred ccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 143 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
... ...||+|++. |+.....++..+.+.|++||++++..
T Consensus 126 -~~~-~~~fD~I~lD------P~~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 126 -AER-HRYFHFIDLD------PFGSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp -HHS-TTCEEEEEEC------CSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred -Hhc-cCCCCEEEeC------CCCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 111 3479999963 22233578889999999999888764
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-11 Score=96.28 Aligned_cols=76 Identities=29% Similarity=0.362 Sum_probs=61.2
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|.++..++..+ .+++++|+++.+++.++++....+ .++.++++|+.+. +++ +||+
T Consensus 25 ~~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~----~~~--~fD~ 96 (285)
T 1zq9_A 25 ALRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT----DLP--FFDT 96 (285)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS----CCC--CCSE
T ss_pred CCCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc----cch--hhcE
Confidence 34567899999999999999999876 489999999999999998754333 4789999998763 232 6999
Q ss_pred EEechh
Q psy1107 154 ATLIFV 159 (218)
Q Consensus 154 i~~~~~ 159 (218)
|+++..
T Consensus 97 vv~nlp 102 (285)
T 1zq9_A 97 CVANLP 102 (285)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 998543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-10 Score=95.41 Aligned_cols=105 Identities=19% Similarity=0.234 Sum_probs=77.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..++.+|||+|||+|.++..++... .+|+++|+|+.+++.|+.++...+ .++.|++.|+.+.....+++.++||+|+
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 3466899999999999999998873 599999999999999998876544 4799999998763211123456899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.-... ....+++.+.+ ++|+++++++.
T Consensus 362 ~dPPr~-----g~~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 362 LDPARA-----GAAGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp ECCCTT-----CCHHHHHHHHH-HCCSEEEEEES
T ss_pred ECCCCc-----cHHHHHHHHHh-cCCCeEEEEEC
Confidence 843222 12345554443 68999888865
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.8e-11 Score=98.77 Aligned_cols=108 Identities=17% Similarity=0.245 Sum_probs=80.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcC-------------CccEEEEEeCCHHHHHHHHhCCcccCC---CceEEeccCCCc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWS-------------KICYIHACDISPRAVNFFKLNPLYDAS---KMNVFPCDVTED 140 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~-------------~~~~v~~~D~s~~~~~~~~~~~~~~~~---~i~~~~~d~~~~ 140 (218)
..++.+|||+|||+|.++..+++.. +...++|+|+++.+++.|+.++...+. +..+.++|....
T Consensus 169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~ 248 (445)
T 2okc_A 169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK 248 (445)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCC
Confidence 4556799999999999998887642 235899999999999999887543332 678888887663
Q ss_pred ccccCCCCCcccEEEechhhcCCCcc---------------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 141 DILNQVPHNSVDIATLIFVLSAIHPN---------------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 141 ~~~~~~~~~~~D~i~~~~~l~~~~~~---------------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.. ..+||+|+++-.+...... ....++..+.++|+|||.+.++.
T Consensus 249 ----~~-~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 249 ----EP-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp ----CC-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----cc-cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 22 2389999997655543211 12478899999999999988765
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-10 Score=96.47 Aligned_cols=99 Identities=17% Similarity=0.249 Sum_probs=73.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.| .++.++++|+... .+.++||+|++
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------~~~~~~~~D~~~~-----~~~~~fD~Ii~ 104 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------PWAEGILADFLLW-----EPGEAFDLILG 104 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------TTEEEEESCGGGC-----CCSSCEEEEEE
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------CCCcEEeCChhhc-----CccCCCCEEEE
Confidence 346699999999999999998764 456999999999987665 3688889988652 22458999999
Q ss_pred chhhcC----------CCcc-----------------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSA----------IHPN-----------------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~----------~~~~-----------------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+-.... ++.+ ....++..+.++|+|||.+++..
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~ 164 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 164 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 532211 1111 12366889999999999988865
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-10 Score=88.37 Aligned_cols=99 Identities=16% Similarity=0.084 Sum_probs=69.7
Q ss_pred cCCCcEEEEecCCC------chhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccCCCceE-EeccCCCcccccCCCC
Q psy1107 77 DVGEGVLLEVGCGV------GNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDASKMNV-FPCDVTEDDILNQVPH 148 (218)
Q Consensus 77 ~~~~~~vLDiGcG~------G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~-~~~d~~~~~~~~~~~~ 148 (218)
..++.+|||+|||+ |. ..++...+ ..+|+++|+++. + .++.+ +++|+.+. +++
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-----------~~v~~~i~gD~~~~----~~~- 121 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-----------SDADSTLIGDCATV----HTA- 121 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-----------CSSSEEEESCGGGC----CCS-
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-----------CCCEEEEECccccC----Ccc-
Confidence 45678999999955 66 33444433 579999999987 1 26888 99998762 222
Q ss_pred CcccEEEechhhcC--------CC-cchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 149 NSVDIATLIFVLSA--------IH-PNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 149 ~~~D~i~~~~~l~~--------~~-~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
++||+|++...... .. ......+++.+.++|||||.|++..+....
T Consensus 122 ~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~ 176 (290)
T 2xyq_A 122 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 176 (290)
T ss_dssp SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 57999998643211 10 123568899999999999999997765443
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.7e-10 Score=91.14 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=80.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCc--------------------------------------cEEEEEeCCHHHH
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKI--------------------------------------CYIHACDISPRAV 116 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~--------------------------------------~~v~~~D~s~~~~ 116 (218)
....++..|||++||+|.+++.++....+ .+++|+|+++.++
T Consensus 197 ~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al 276 (393)
T 3k0b_A 197 TSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLI 276 (393)
T ss_dssp SCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHH
T ss_pred hCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHH
Confidence 33456789999999999999888765322 4699999999999
Q ss_pred HHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEechhhcC-CC-cchHHHHHHHHHHhccC--CeEEEEEec
Q psy1107 117 NFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSA-IH-PNKFSTVVKNLFIMLKS--GGIILFRDY 190 (218)
Q Consensus 117 ~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~-~~-~~~~~~~l~~~~~~Lk~--gG~li~~~~ 190 (218)
+.|+.++...+ .++.+.+.|+.+. ..+ .+||+|+++-.+.. +. ......+...+.+.||+ ||.+++...
T Consensus 277 ~~Ar~Na~~~gl~~~I~~~~~D~~~~----~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 277 EIAKQNAVEAGLGDLITFRQLQVADF----QTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp HHHHHHHHHTTCTTCSEEEECCGGGC----CCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCCceEEEECChHhC----CCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 99999876554 3599999998772 223 38999998643211 10 12344555666666665 888888764
Q ss_pred CCC
Q psy1107 191 GLH 193 (218)
Q Consensus 191 ~~~ 193 (218)
...
T Consensus 352 ~~~ 354 (393)
T 3k0b_A 352 YEL 354 (393)
T ss_dssp CTT
T ss_pred CHH
Confidence 433
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-09 Score=89.00 Aligned_cols=119 Identities=8% Similarity=0.001 Sum_probs=84.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCc--------------------------------------cEEEEEeCCHHHH
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKI--------------------------------------CYIHACDISPRAV 116 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~--------------------------------------~~v~~~D~s~~~~ 116 (218)
....++..+||++||+|.+++..+....+ .+++|+|+++.++
T Consensus 190 ~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al 269 (384)
T 3ldg_A 190 SNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMV 269 (384)
T ss_dssp TTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHH
T ss_pred hCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHH
Confidence 34456789999999999999888765332 4699999999999
Q ss_pred HHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEechhhc-CCC-cchHHHHHHHHHHhccC--CeEEEEEec
Q psy1107 117 NFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLS-AIH-PNKFSTVVKNLFIMLKS--GGIILFRDY 190 (218)
Q Consensus 117 ~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~-~~~-~~~~~~~l~~~~~~Lk~--gG~li~~~~ 190 (218)
+.|+.++...+ ..+.+.+.|+.+. ..+ .+||+|+++-.+. -+. ..+...+...+.+.||+ ||.+++...
T Consensus 270 ~~Ar~Na~~~gl~~~I~~~~~D~~~l----~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 270 EIARKNAREVGLEDVVKLKQMRLQDF----KTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp HHHHHHHHHTTCTTTEEEEECCGGGC----CCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHHcCCCCceEEEECChHHC----Ccc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 99999876554 3589999998772 223 3899999864322 121 23455666777777766 888888775
Q ss_pred CCCchhhh
Q psy1107 191 GLHDMAQM 198 (218)
Q Consensus 191 ~~~~~~~~ 198 (218)
...-...+
T Consensus 345 ~~~l~~~~ 352 (384)
T 3ldg_A 345 DTDFEQKF 352 (384)
T ss_dssp CTTHHHHH
T ss_pred CHHHHHHh
Confidence 43333333
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-10 Score=89.67 Aligned_cols=77 Identities=25% Similarity=0.436 Sum_probs=57.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++..+ .+++++|+++.+++.++.+....+ .++.++++|+... ++ .+||+|
T Consensus 39 ~~~~~~~VLDiG~G~G~lt~~La~~~--~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~----~~--~~~D~V 110 (299)
T 2h1r_A 39 KIKSSDIVLEIGCGTGNLTVKLLPLA--KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT----VF--PKFDVC 110 (299)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHTTTS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSS----CC--CCCSEE
T ss_pred CCCCcCEEEEEcCcCcHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhC----Cc--ccCCEE
Confidence 34567899999999999999998874 599999999999999998754333 5789999998762 22 379999
Q ss_pred Eechhh
Q psy1107 155 TLIFVL 160 (218)
Q Consensus 155 ~~~~~l 160 (218)
+++...
T Consensus 111 v~n~py 116 (299)
T 2h1r_A 111 TANIPY 116 (299)
T ss_dssp EEECCG
T ss_pred EEcCCc
Confidence 986443
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-11 Score=92.22 Aligned_cols=104 Identities=11% Similarity=0.045 Sum_probs=74.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCC-CCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVP-HNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~~~D~i~ 155 (218)
..++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++.. ...++.++++|+.+. +++ .++| .|+
T Consensus 27 ~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~-~~~~v~~~~~D~~~~----~~~~~~~f-~vv 98 (245)
T 1yub_A 27 LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK-LNTRVTLIHQDILQF----QFPNKQRY-KIV 98 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT-TCSEEEECCSCCTTT----TCCCSSEE-EEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhc-cCCceEEEECChhhc----CcccCCCc-EEE
Confidence 4567899999999999999999876 599999999999999888765 235789999998773 333 2478 555
Q ss_pred echhhcCCCcchHH----------HHH----HHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFS----------TVV----KNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~----------~~l----~~~~~~Lk~gG~li~~~ 189 (218)
++-.. +....... .++ +.+.++|+|||.+.+..
T Consensus 99 ~n~Py-~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 99 GNIPY-HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EECCS-SSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred EeCCc-cccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 54221 11111111 223 66889999999877644
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-10 Score=93.06 Aligned_cols=103 Identities=16% Similarity=0.079 Sum_probs=79.8
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCc-cEEEEEeCCHHHHHHHHhCCcccC-CC--ceEEeccCCCccccc-CCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDA-SK--MNVFPCDVTEDDILN-QVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~~v~~~D~s~~~~~~~~~~~~~~~-~~--i~~~~~d~~~~~~~~-~~~~~~~D 152 (218)
.++.+|||++||+|.+++.++..... .+|+++|+++.+++.++++++.++ .+ +.+++.|+.+. .. .. ...||
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~--l~~~~-~~~fD 127 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF--LRKEW-GFGFD 127 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH--HHSCC-SSCEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH--HHHhh-CCCCc
Confidence 45789999999999999999886432 489999999999999999987665 33 88888887652 11 22 34799
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++.- +.....++..+.+.|++||+|++..
T Consensus 128 ~V~lDP------~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 128 YVDLDP------FGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEEECC------SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECC------CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 999753 1223468888999999999888866
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-10 Score=86.81 Aligned_cols=110 Identities=12% Similarity=0.076 Sum_probs=70.4
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCC-cccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNP-LYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....+..+|||+|||+|.|+..++...+...+.++|+.... ...... ...+.++..+..++.. ..++..++|+
T Consensus 70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl--~~~pi~~~~~g~~ii~~~~~~dv----~~l~~~~~Dl 143 (277)
T 3evf_A 70 GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDG--HEKPMNVQSLGWNIITFKDKTDI----HRLEPVKCDT 143 (277)
T ss_dssp TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT--CCCCCCCCBTTGGGEEEECSCCT----TTSCCCCCSE
T ss_pred CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccC--cccccccCcCCCCeEEEecccee----hhcCCCCccE
Confidence 34567789999999999999888776544578888886432 000110 1111245555555422 3455678999
Q ss_pred EEechhhcCCCc---chH--HHHHHHHHHhccCC-eEEEEEecC
Q psy1107 154 ATLIFVLSAIHP---NKF--STVVKNLFIMLKSG-GIILFRDYG 191 (218)
Q Consensus 154 i~~~~~l~~~~~---~~~--~~~l~~~~~~Lk~g-G~li~~~~~ 191 (218)
|++....+ ..- +.. ..+++.+.++|+|| |.|++--|.
T Consensus 144 VlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 144 LLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp EEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred EEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 99966544 211 111 13467889999999 999998877
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-10 Score=91.30 Aligned_cols=100 Identities=19% Similarity=0.159 Sum_probs=72.4
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCC----------
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPH---------- 148 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~---------- 148 (218)
+.+|||+|||+|.++..++... .+|+++|+++.+++.|+.++..++ .++.|+.+|+.+.. ..+..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~--~~~~~~~~~~~l~~~ 289 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT--QAMNGVREFNRLQGI 289 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHH--HHHSSCCCCTTGGGS
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHH--HHHhhcccccccccc
Confidence 5789999999999999988754 489999999999999999876554 57999999886521 11111
Q ss_pred ----CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 149 ----NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 149 ----~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+||+|++.-.-. .+...+.+.|+++|.+++.+..
T Consensus 290 ~~~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 290 DLKSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp CGGGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEESC
T ss_pred ccccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEECC
Confidence 3799998742111 1234455666788888877644
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-09 Score=84.29 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=62.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||||||+|.++..++..+ .+|+++|+++.+++.++++.. ...++.++++|+.+. .++..+||.|+
T Consensus 47 ~~~~~~~VLEIG~G~G~lT~~La~~~--~~V~aVEid~~li~~a~~~~~-~~~~v~vi~gD~l~~----~~~~~~fD~Iv 119 (295)
T 3gru_A 47 NLTKDDVVLEIGLGKGILTEELAKNA--KKVYVIEIDKSLEPYANKLKE-LYNNIEIIWGDALKV----DLNKLDFNKVV 119 (295)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCGGGHHHHHHHHH-HCSSEEEEESCTTTS----CGGGSCCSEEE
T ss_pred CCCCcCEEEEECCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhc-cCCCeEEEECchhhC----CcccCCccEEE
Confidence 44567899999999999999999875 599999999999999998765 235899999999873 33444799999
Q ss_pred ech
Q psy1107 156 LIF 158 (218)
Q Consensus 156 ~~~ 158 (218)
++.
T Consensus 120 ~Nl 122 (295)
T 3gru_A 120 ANL 122 (295)
T ss_dssp EEC
T ss_pred EeC
Confidence 753
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=89.22 Aligned_cols=115 Identities=11% Similarity=0.044 Sum_probs=81.9
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCc--------------------------------------cEEEEEeCCHHHHH
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKI--------------------------------------CYIHACDISPRAVN 117 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~--------------------------------------~~v~~~D~s~~~~~ 117 (218)
...++..|||++||+|.+++.++....+ ..++|+|+++.+++
T Consensus 192 ~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~ 271 (385)
T 3ldu_A 192 PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESID 271 (385)
T ss_dssp CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHH
T ss_pred CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHH
Confidence 3456789999999999999988765321 47999999999999
Q ss_pred HHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEechhhcC-CC-cchHHHHHHHHHHhccC--CeEEEEEecC
Q psy1107 118 FFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSA-IH-PNKFSTVVKNLFIMLKS--GGIILFRDYG 191 (218)
Q Consensus 118 ~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~-~~-~~~~~~~l~~~~~~Lk~--gG~li~~~~~ 191 (218)
.|+.++...+ .++.+.+.|+.+. .. ..+||+|+++-.+.. +. ......+...+.+.|++ ||.+++....
T Consensus 272 ~Ar~Na~~~gl~~~i~~~~~D~~~l----~~-~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 346 (385)
T 3ldu_A 272 IARENAEIAGVDEYIEFNVGDATQF----KS-EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSY 346 (385)
T ss_dssp HHHHHHHHHTCGGGEEEEECCGGGC----CC-SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESC
T ss_pred HHHHHHHHcCCCCceEEEECChhhc----Cc-CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 9999876554 3689999998772 22 248999998644321 11 12445566667777766 8888877644
Q ss_pred CCch
Q psy1107 192 LHDM 195 (218)
Q Consensus 192 ~~~~ 195 (218)
..-.
T Consensus 347 ~~l~ 350 (385)
T 3ldu_A 347 EDFE 350 (385)
T ss_dssp TTHH
T ss_pred HHHH
Confidence 3333
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.9e-09 Score=83.47 Aligned_cols=112 Identities=12% Similarity=0.016 Sum_probs=78.4
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCC-CCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVP-HNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~-~~~~ 151 (218)
....++.+|||+|||+|..+..++.. .+..+|+++|+++.+++.+++++...+ .++.+++.|+.+... ..+ ..+|
T Consensus 98 l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~--~~~~~~~f 175 (309)
T 2b9e_A 98 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP--SDPRYHEV 175 (309)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT--TCGGGTTE
T ss_pred hCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCc--cccccCCC
Confidence 44567889999999999999999876 344699999999999999999876555 578999999866311 111 1479
Q ss_pred cEEEech------hhcCC---------Ccch-------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIF------VLSAI---------HPNK-------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~------~l~~~---------~~~~-------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|.|++.. ++..- ++++ +..++..+.++|+ ||.|+++.
T Consensus 176 D~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT 234 (309)
T 2b9e_A 176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST 234 (309)
T ss_dssp EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred CEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence 9999721 22111 1112 2356777777786 89888754
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.96 E-value=5.6e-09 Score=80.36 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=60.8
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||||||+|.++..++..+ .+++++|+++.+++.++++... ..++.++++|+.+.++......++|| |+
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~-~~~v~~i~~D~~~~~~~~~~~~~~~~-vv 101 (255)
T 3tqs_A 26 HPQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQ-QKNITIYQNDALQFDFSSVKTDKPLR-VV 101 (255)
T ss_dssp CCCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTT-CTTEEEEESCTTTCCGGGSCCSSCEE-EE
T ss_pred CCCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhh-CCCcEEEEcchHhCCHHHhccCCCeE-EE
Confidence 34567899999999999999999876 5999999999999999987553 35899999999885543222234688 44
Q ss_pred e
Q psy1107 156 L 156 (218)
Q Consensus 156 ~ 156 (218)
+
T Consensus 102 ~ 102 (255)
T 3tqs_A 102 G 102 (255)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.6e-09 Score=83.29 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=64.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc-ccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI-LNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~~D~i~ 155 (218)
..++.+|||+|||+|..+..++...+..+++++|.|+.+++.|+++....+.++.++++|+.+... .......+||.|+
T Consensus 24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl 103 (301)
T 1m6y_A 24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGIL 103 (301)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEEE
Confidence 456789999999999999999988766799999999999999999876655689999999876321 1111114799998
Q ss_pred ec
Q psy1107 156 LI 157 (218)
Q Consensus 156 ~~ 157 (218)
+.
T Consensus 104 ~D 105 (301)
T 1m6y_A 104 MD 105 (301)
T ss_dssp EE
T ss_pred Ec
Confidence 74
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.8e-08 Score=75.29 Aligned_cols=60 Identities=17% Similarity=0.310 Sum_probs=52.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE 139 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~ 139 (218)
..++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++.... .++.++++|+.+
T Consensus 28 ~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~-~~v~~~~~D~~~ 87 (244)
T 1qam_A 28 LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDH-DNFQVLNKDILQ 87 (244)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTC-CSEEEECCCGGG
T ss_pred CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccC-CCeEEEEChHHh
Confidence 4567899999999999999999886 59999999999999999876532 579999999877
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.6e-09 Score=90.68 Aligned_cols=111 Identities=12% Similarity=0.074 Sum_probs=79.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC------------------CccEEEEEeCCHHHHHHHHhCCcccC-CC-----ce
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS------------------KICYIHACDISPRAVNFFKLNPLYDA-SK-----MN 131 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~------------------~~~~v~~~D~s~~~~~~~~~~~~~~~-~~-----i~ 131 (218)
...++.+|||+|||+|.++..++... ....++|+|+++.++..|+.++...+ .. ..
T Consensus 166 ~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~ 245 (541)
T 2ar0_A 166 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA 245 (541)
T ss_dssp CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBS
T ss_pred ccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCC
Confidence 34556799999999999988877542 12379999999999999987754333 22 67
Q ss_pred EEeccCCCcccccCCCCCcccEEEechhhcCCCc------------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 132 VFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHP------------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 132 ~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~------------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.++|..... ..+..+||+|+++-.+..... .....++..+.++|+|||++.++.
T Consensus 246 I~~gDtL~~~---~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 246 IRLGNTLGSD---GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp EEESCTTSHH---HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEeCCCcccc---cccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 8888876532 123357999999755443211 123468899999999999988764
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-08 Score=79.00 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=82.9
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc------ccCCCceEEeccCCCcccccCCCCCc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL------YDASKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~------~~~~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
.+++.+||-||.|.|..++.+++..+..+++.+|+++.+++.+++.+. ....++.++..|.... ......+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~---l~~~~~~ 157 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNF---VNQTSQT 157 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTT---TSCSSCC
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHH---Hhhcccc
Confidence 356789999999999999999987666699999999999999998753 2246899999998762 2334568
Q ss_pred ccEEEechhhcCCCcc--hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 151 VDIATLIFVLSAIHPN--KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
||+|+.-..-..-++. -...+++.+++.|+|||+++...
T Consensus 158 yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 158 FDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred CCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 9999974321111111 12478899999999999988743
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-09 Score=82.78 Aligned_cols=110 Identities=12% Similarity=0.044 Sum_probs=70.1
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...+..+|||+|||+|.|+..++...+..++.++|+.......+.. ....+.++.....+... ..++..++|+|+
T Consensus 87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~~~~g~~ii~~~~~~dv----~~l~~~~~DvVL 161 (282)
T 3gcz_A 87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-RTTLGWNLIRFKDKTDV----FNMEVIPGDTLL 161 (282)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCG----GGSCCCCCSEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-cccCCCceEEeeCCcch----hhcCCCCcCEEE
Confidence 3457789999999999999888866555689999987653111111 01112234433332211 234556899999
Q ss_pred echhhcCCCc---ch--HHHHHHHHHHhccCC--eEEEEEecC
Q psy1107 156 LIFVLSAIHP---NK--FSTVVKNLFIMLKSG--GIILFRDYG 191 (218)
Q Consensus 156 ~~~~l~~~~~---~~--~~~~l~~~~~~Lk~g--G~li~~~~~ 191 (218)
|..... ..- +. ...++..+.++|+|| |.|++--|.
T Consensus 162 SDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 162 CDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp ECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred ecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 966544 211 11 123577778999999 999998887
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.1e-08 Score=79.99 Aligned_cols=112 Identities=13% Similarity=0.158 Sum_probs=75.8
Q ss_pred CCcEEEEecCCCchhHHHHhh--------cC-------CccEEEEEeCCHHHHHHHHhCCccc-------------CCCc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLS--------WS-------KICYIHACDISPRAVNFFKLNPLYD-------------ASKM 130 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~--------~~-------~~~~v~~~D~s~~~~~~~~~~~~~~-------------~~~i 130 (218)
...+|+|+|||+|..+..++. .+ |..+++.-|+........-...... ..+.
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 358999999999999887732 11 6678888887665443332221110 0011
Q ss_pred eEEe---ccCCCcccccCCCCCcccEEEechhhcCCC--cc----------------------------------hHHHH
Q psy1107 131 NVFP---CDVTEDDILNQVPHNSVDIATLIFVLSAIH--PN----------------------------------KFSTV 171 (218)
Q Consensus 131 ~~~~---~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~--~~----------------------------------~~~~~ 171 (218)
.|.. +.+.. ..+|++++|+|+++.++|+++ |. |+..+
T Consensus 132 ~f~~gvpgSFy~----rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~f 207 (374)
T 3b5i_A 132 YFVAGVPGSFYR----RLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEF 207 (374)
T ss_dssp SEEEEEESCTTS----CCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhc----ccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 2322 23333 457888999999999999986 21 45567
Q ss_pred HHHHHHhccCCeEEEEEecCCCc
Q psy1107 172 VKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 172 l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
++...+.|+|||.+++.-.++.+
T Consensus 208 L~~ra~eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 208 LRARAAEVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HHHHHHHEEEEEEEEEEEEECCC
T ss_pred HHHHHHHhCCCCEEEEEEecCCC
Confidence 88889999999999998766654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-07 Score=72.35 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=53.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 142 (218)
...++.+|||+|||+|.++..++..+ ..+++++|+++.+++.++.+ . ..++.++++|+.+.++
T Consensus 28 ~~~~~~~VLDiG~G~G~lt~~L~~~~-~~~v~avEid~~~~~~~~~~-~--~~~v~~i~~D~~~~~~ 90 (249)
T 3ftd_A 28 NIEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSI-G--DERLEVINEDASKFPF 90 (249)
T ss_dssp TCCTTCEEEEEESCHHHHHHHHTTSC-CSEEEEECCCHHHHHHHTTS-C--CTTEEEECSCTTTCCG
T ss_pred CCCCcCEEEEEcCchHHHHHHHHHcC-CCeEEEEECCHHHHHHHHhc-c--CCCeEEEEcchhhCCh
Confidence 34567899999999999999999873 35999999999999999987 2 3589999999987543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.3e-08 Score=76.66 Aligned_cols=76 Identities=13% Similarity=0.043 Sum_probs=60.2
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++ +|||||||+|.++..++..+ .+|+++|+++.+++.++++.. ..++.++++|+.+.++... ..+|.|+
T Consensus 44 ~~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~--~~~v~vi~~D~l~~~~~~~---~~~~~iv 115 (271)
T 3fut_A 44 RPFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLS--GLPVRLVFQDALLYPWEEV---PQGSLLV 115 (271)
T ss_dssp CCCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTT--TSSEEEEESCGGGSCGGGS---CTTEEEE
T ss_pred CCCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcC--CCCEEEEECChhhCChhhc---cCccEEE
Confidence 34566 99999999999999999876 589999999999999998765 2589999999987433211 1578887
Q ss_pred echh
Q psy1107 156 LIFV 159 (218)
Q Consensus 156 ~~~~ 159 (218)
++-.
T Consensus 116 ~NlP 119 (271)
T 3fut_A 116 ANLP 119 (271)
T ss_dssp EEEC
T ss_pred ecCc
Confidence 6543
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-08 Score=86.31 Aligned_cols=107 Identities=13% Similarity=0.136 Sum_probs=74.2
Q ss_pred CcEEEEecCCCchhHHHHhhcCC---------------ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCccc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSK---------------ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDI 142 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~---------------~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~ 142 (218)
..+|||++||+|.++..++.... ...++|+|+++.++..|+.++...+ .++.+.++|....
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~-- 322 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLD-- 322 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTS--
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcC--
Confidence 34999999999999887754311 3589999999999999998754333 2333466776542
Q ss_pred ccCCCCCcccEEEechhhcC-------------------------CCcc--hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 143 LNQVPHNSVDIATLIFVLSA-------------------------IHPN--KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 143 ~~~~~~~~~D~i~~~~~l~~-------------------------~~~~--~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
...+..+||+|+++-.+.. +++. .-..++..+.+.|+|||.+.++-
T Consensus 323 -~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVl 395 (544)
T 3khk_A 323 -DQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLL 395 (544)
T ss_dssp -CSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -cccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEe
Confidence 2234568999999654332 2211 11258899999999999987754
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.76 E-value=9.7e-08 Score=80.92 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=79.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcC---CccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCCCcc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWS---KICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~---~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
.++.+|||++||+|.++..++... ....++|+|+++.++..|+.++...+ .++.+.++|....+++ .....+|
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p-~~~~~~f 298 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWP-TQEPTNF 298 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSC-CSSCCCB
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccc-ccccccc
Confidence 467799999999999998887662 24689999999999999988754333 2567888888764221 1345689
Q ss_pred cEEEechhhcC-------------------CCc-c-hHHHHHHHHHHhcc-CCeEEEEEe
Q psy1107 152 DIATLIFVLSA-------------------IHP-N-KFSTVVKNLFIMLK-SGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~-------------------~~~-~-~~~~~l~~~~~~Lk-~gG~li~~~ 189 (218)
|+|+++-.+.. +++ . .-..++..+.+.|+ |||++.++.
T Consensus 299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence 99998533221 111 0 11247899999999 999987754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.7e-08 Score=86.12 Aligned_cols=113 Identities=12% Similarity=0.049 Sum_probs=78.2
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC------------------------------------------CccEEEEEeCCH
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS------------------------------------------KICYIHACDISP 113 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~------------------------------------------~~~~v~~~D~s~ 113 (218)
...++..+||++||+|.+++..+... +...++|+|+++
T Consensus 187 ~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~ 266 (703)
T 3v97_A 187 GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDA 266 (703)
T ss_dssp TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCH
T ss_pred CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCH
Confidence 34567899999999999998877542 124899999999
Q ss_pred HHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEechhhcC-C-CcchHHHHHHHH---HHhccCCeEEE
Q psy1107 114 RAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSA-I-HPNKFSTVVKNL---FIMLKSGGIIL 186 (218)
Q Consensus 114 ~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~-~-~~~~~~~~l~~~---~~~Lk~gG~li 186 (218)
.+++.|+.++...+ ..+.|.++|+.+.. .+...++||+|+++-.... + .......+...+ .+.+.|||.++
T Consensus 267 ~av~~A~~N~~~agv~~~i~~~~~D~~~~~--~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ 344 (703)
T 3v97_A 267 RVIQRARTNARLAGIGELITFEVKDVAQLT--NPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLS 344 (703)
T ss_dssp HHHHHHHHHHHHTTCGGGEEEEECCGGGCC--CSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHHHHcCCCCceEEEECChhhCc--cccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEE
Confidence 99999999976555 34899999987721 2233347999999743321 1 112334444444 44456899999
Q ss_pred EEec
Q psy1107 187 FRDY 190 (218)
Q Consensus 187 ~~~~ 190 (218)
+...
T Consensus 345 ilt~ 348 (703)
T 3v97_A 345 LFSA 348 (703)
T ss_dssp EEES
T ss_pred EEeC
Confidence 8763
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.6e-09 Score=81.57 Aligned_cols=81 Identities=19% Similarity=0.241 Sum_probs=61.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCH-------HHHHHHHhCCcccC--CCceEEeccCCCcccccCCC
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISP-------RAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVP 147 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~-------~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~ 147 (218)
..++.+|||+|||+|.++..++..+ .+|+++|+++ .+++.++.+....+ .++.+++.|+.+. ...++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~g--~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~--l~~~~ 156 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASLG--LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQ--MPALV 156 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHTT--CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHH--HHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHhC--CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHH--HHhhh
Confidence 3456799999999999999999864 5899999999 99999988765433 3489999988652 11122
Q ss_pred C--CcccEEEechhhc
Q psy1107 148 H--NSVDIATLIFVLS 161 (218)
Q Consensus 148 ~--~~~D~i~~~~~l~ 161 (218)
. .+||+|++.-.+.
T Consensus 157 ~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 157 KTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHCCCSEEEECCCC-
T ss_pred ccCCCccEEEECCCCC
Confidence 2 4799999865443
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=81.60 Aligned_cols=117 Identities=12% Similarity=0.099 Sum_probs=83.5
Q ss_pred HHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-------CCCceEEeccCCCccc
Q psy1107 70 FHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-------ASKMNVFPCDVTEDDI 142 (218)
Q Consensus 70 ~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-------~~~i~~~~~d~~~~~~ 142 (218)
+...+....++.+|||+|+|+|.-+..++.......+++.|+++..+..++++.... +.++.+...|....
T Consensus 139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~-- 216 (359)
T 4fzv_A 139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKW-- 216 (359)
T ss_dssp HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGH--
T ss_pred HHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhc--
Confidence 344446677889999999999999999998877678999999999988887764322 23567777776552
Q ss_pred ccCCCCCcccEEEechhhcC-------CCc--------c-------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 143 LNQVPHNSVDIATLIFVLSA-------IHP--------N-------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 143 ~~~~~~~~~D~i~~~~~l~~-------~~~--------~-------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.....+.||.|++-...+. -.+ + .+..++..+.++|||||.|+.+.
T Consensus 217 -~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT 284 (359)
T 4fzv_A 217 -GELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST 284 (359)
T ss_dssp -HHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -chhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 2233458999997322111 011 1 13478888999999999999865
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-08 Score=86.58 Aligned_cols=102 Identities=22% Similarity=0.239 Sum_probs=70.1
Q ss_pred CCcEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhCCccc--CCCceEEeccCCCcccccCCCCCccc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLNPLYD--ASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
+...|||+|||+|.++...+.+ +...+|+++|-|+.+.. +++....+ +.+|.++++|+++- .+|+ ++|
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~-a~~~v~~N~~~dkVtVI~gd~eev----~LPE-KVD 430 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVV-TLENWQFEEWGSQVTVVSSDMREW----VAPE-KAD 430 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHH-HHHHHHHHTTGGGEEEEESCTTTC----CCSS-CEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHH-HHHHHHhccCCCeEEEEeCcceec----cCCc-ccC
Confidence 4468999999999995544443 22347999999986554 44333322 36799999999883 3343 899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEE
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li 186 (218)
+|++-..-..+-.+....++....++|||||+++
T Consensus 431 IIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 431 IIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 9999554333333344567777789999999765
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.72 E-value=7.8e-08 Score=77.18 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=82.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhc----------------CCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEec---c
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSW----------------SKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPC---D 136 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~----------------~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~---d 136 (218)
+...+|+|+||++|..+..++.. .|..+++.-|........+........ .+..|..+ .
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999888776654 356788999988887777776644211 12234333 3
Q ss_pred CCCcccccCCCCCcccEEEechhhcCCCc---c----------------------------hHHHHHHHHHHhccCCeEE
Q psy1107 137 VTEDDILNQVPHNSVDIATLIFVLSAIHP---N----------------------------KFSTVVKNLFIMLKSGGII 185 (218)
Q Consensus 137 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~---~----------------------------~~~~~l~~~~~~Lk~gG~l 185 (218)
+.. ..+|.+++|+|+++..+|+++. . |+..+|+...+.|+|||.+
T Consensus 130 Fy~----rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~m 205 (359)
T 1m6e_X 130 FYG----RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRM 205 (359)
T ss_dssp SSS----CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEE
T ss_pred hhh----ccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 333 5678889999999999999852 1 3446688889999999999
Q ss_pred EEEecCCCch
Q psy1107 186 LFRDYGLHDM 195 (218)
Q Consensus 186 i~~~~~~~~~ 195 (218)
++.-.++.+.
T Consensus 206 vl~~~gr~~~ 215 (359)
T 1m6e_X 206 VLTILGRRSE 215 (359)
T ss_dssp EEEEEECSSS
T ss_pred EEEEecCCCC
Confidence 9987666553
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.8e-08 Score=75.63 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=53.4
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCc--cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKI--CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~--~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 142 (218)
...++.+|||||||+|.++..++..++. .+++++|+++.+++.++++. ..++.++++|+.+.++
T Consensus 39 ~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~~~v~~i~~D~~~~~~ 104 (279)
T 3uzu_A 39 RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---GELLELHAGDALTFDF 104 (279)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---GGGEEEEESCGGGCCG
T ss_pred CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---CCCcEEEECChhcCCh
Confidence 3456789999999999999999987642 34999999999999999872 4579999999988544
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-08 Score=87.27 Aligned_cols=107 Identities=14% Similarity=0.075 Sum_probs=71.8
Q ss_pred CcEEEEecCCCchhHHHHhhc----C---------CccEEEEEeCCHHHHHHHHhCCc-ccCCCceEEeccCCCccccc-
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSW----S---------KICYIHACDISPRAVNFFKLNPL-YDASKMNVFPCDVTEDDILN- 144 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~----~---------~~~~v~~~D~s~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~~~~- 144 (218)
...|||+|||+|.++...+.+ + ...+|+++|-|+.++..++.... .....|.++.+|+++...+.
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 568999999999996433222 2 23499999999987766555433 22357999999998743210
Q ss_pred CCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEE
Q psy1107 145 QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li 186 (218)
.-...++|+|++...-.....+.....+..+.++|||||+++
T Consensus 490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 001348999998554333222345567777789999999766
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-07 Score=69.55 Aligned_cols=102 Identities=12% Similarity=0.039 Sum_probs=72.2
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC----CCceEEeccCCCcc------------
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA----SKMNVFPCDVTEDD------------ 141 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~------------ 141 (218)
.+..+|||+||| ..+..+++. ++.+|+.+|.++...+.+++++...+ .++.++.+|+....
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 457899999985 566666654 35799999999999999998766543 47899999865420
Q ss_pred -ccc------CC-CCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 142 -ILN------QV-PHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 142 -~~~------~~-~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.. .. ..++||+|+.-.- .....+..+.+.|+|||++++-+
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSSCEEEEETT
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCCCeEEEEeC
Confidence 000 12 2358999997531 22356666789999999887744
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.8e-08 Score=67.18 Aligned_cols=115 Identities=14% Similarity=0.100 Sum_probs=71.0
Q ss_pred CCCcEEEEecCCCc-hhHHHHhh-cCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVG-NFIFPLLS-WSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G-~~~~~~~~-~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+|||||||+| ..+..+++ .+ ..|+++|+++.++. +++.|+++.... . -..||+|.
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~g--~~V~atDInp~Av~--------------~v~dDiF~P~~~--~-Y~~~DLIY 94 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHSK--VDLVLTDIKPSHGG--------------IVRDDITSPRME--I-YRGAALIY 94 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHSC--CEEEEECSSCSSTT--------------EECCCSSSCCHH--H-HTTEEEEE
T ss_pred CCCCcEEEEccCCChHHHHHHHHhCC--CeEEEEECCccccc--------------eEEccCCCCccc--c-cCCcCEEE
Confidence 44679999999999 58888886 44 68999999987655 777788763221 0 02799997
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchhhh-ccCCCCccCccceeccCCCC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQM-RFKPGHKISENLYMRQDKTR 218 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 218 (218)
+.. ||.++...+..+.+. -|.-+++...+......- ..+....-+..||.-..++|
T Consensus 95 sir-----PP~El~~~i~~lA~~--v~adliI~pL~~E~~~~~~~~kl~ny~g~~fY~~~~~~~ 151 (153)
T 2k4m_A 95 SIR-----PPAEIHSSLMRVADA--VGARLIIKPLTGEDIVTERKMKLVNYGRTYFYEYIAEVR 151 (153)
T ss_dssp EES-----CCTTTHHHHHHHHHH--HTCEEEEECBTTBCCCCCTTCEEEEETTEEEEEEECCCC
T ss_pred EcC-----CCHHHHHHHHHHHHH--cCCCEEEEcCCCCcCCCCCceEEEecCCceEEEEehhhc
Confidence 643 333444444444443 356688877665543211 12222233566776555543
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-07 Score=83.20 Aligned_cols=108 Identities=16% Similarity=0.180 Sum_probs=72.8
Q ss_pred CCcEEEEecCCCchhHHHHhhcCC---ccEEEEEeCCHHHHHHH--HhCCcc----cC-CCceEEeccCCCcccccCCCC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSK---ICYIHACDISPRAVNFF--KLNPLY----DA-SKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~---~~~v~~~D~s~~~~~~~--~~~~~~----~~-~~i~~~~~d~~~~~~~~~~~~ 148 (218)
++.+|||+|||+|.++..++...+ ..+++|+|+++.+++.| +.+... .+ ....+...|+... .....
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~---~~~~~ 397 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSL---NPEDF 397 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGC---CGGGG
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcc---ccccc
Confidence 567999999999999999887653 35899999999999999 433322 11 1224444444431 12234
Q ss_pred CcccEEEechhhcC-CC-c-------------------------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSA-IH-P-------------------------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~-~~-~-------------------------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+||+|+++-.+.. .. + +....++..+.++|++||.+.+.-
T Consensus 398 ~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl 465 (878)
T 3s1s_A 398 ANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM 465 (878)
T ss_dssp TTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence 57999999654421 11 0 113457788999999999988865
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.2e-07 Score=73.52 Aligned_cols=114 Identities=16% Similarity=0.090 Sum_probs=73.4
Q ss_pred CcEEEEecCCCchhHHHHhhc-----------------CCccEEEEEeCC-----------HHHHHHHHhCCcccCCCce
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSW-----------------SKICYIHACDIS-----------PRAVNFFKLNPLYDASKMN 131 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~-----------------~~~~~v~~~D~s-----------~~~~~~~~~~~~~~~~~i~ 131 (218)
..+|+|+||++|..+..++.. .|..+++.-|+. +...+.+...... ..+..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~-~~~~~ 131 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR-KIGSC 131 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC-CTTSE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC-CCCce
Confidence 689999999999998877654 255678888876 2222222221110 01234
Q ss_pred EEeccCCCcccccCCCCCcccEEEechhhcCCC--cch-----------------------------------HHHHHHH
Q psy1107 132 VFPCDVTEDDILNQVPHNSVDIATLIFVLSAIH--PNK-----------------------------------FSTVVKN 174 (218)
Q Consensus 132 ~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~--~~~-----------------------------------~~~~l~~ 174 (218)
|..+.... -+-..+|.+++|+|+++.++|+++ |.. +..+|+.
T Consensus 132 f~~gvpgS-Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~ 210 (384)
T 2efj_A 132 LIGAMPGS-FYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRI 210 (384)
T ss_dssp EEEECCSC-TTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchh-hhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44442221 111467889999999999999986 211 1123666
Q ss_pred HHHhccCCeEEEEEecCCCch
Q psy1107 175 LFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 175 ~~~~Lk~gG~li~~~~~~~~~ 195 (218)
..+.|+|||.+++.-.++.+.
T Consensus 211 Ra~eL~pGG~mvl~~~gr~~~ 231 (384)
T 2efj_A 211 HSEELISRGRMLLTFICKEDE 231 (384)
T ss_dssp HHHHEEEEEEEEEEEECCCTT
T ss_pred HHHHhccCCeEEEEEecCCCc
Confidence 689999999999988776554
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=5.2e-08 Score=75.25 Aligned_cols=115 Identities=11% Similarity=0.044 Sum_probs=70.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+||++|.|+..+++..+...+.++|+.......... ....+.++.....++.. ..+....+|+|
T Consensus 77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~~iv~~~~~~di----~~l~~~~~DlV 151 (300)
T 3eld_A 77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGWNIVKFKDKSNV----FTMPTEPSDTL 151 (300)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCT----TTSCCCCCSEE
T ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCCceEEeecCcee----eecCCCCcCEE
Confidence 34567899999999999999999876555588899986432100000 00111233333222111 23445689999
Q ss_pred EechhhcCCCc---ch--HHHHHHHHHHhccCC-eEEEEEecC--CCch
Q psy1107 155 TLIFVLSAIHP---NK--FSTVVKNLFIMLKSG-GIILFRDYG--LHDM 195 (218)
Q Consensus 155 ~~~~~l~~~~~---~~--~~~~l~~~~~~Lk~g-G~li~~~~~--~~~~ 195 (218)
++..... ... +. ...++..+..+|+|| |.|++--|. ..+.
T Consensus 152 lsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~ 199 (300)
T 3eld_A 152 LCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDV 199 (300)
T ss_dssp EECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHH
T ss_pred eecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccH
Confidence 9965443 211 11 124577778999999 999998877 4443
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-08 Score=83.20 Aligned_cols=75 Identities=12% Similarity=0.007 Sum_probs=60.0
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc--C-CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD--A-SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~--~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
++.+|||+|||+|..+..++..+ .+|+++|+|+.+++.++.++... + .++.++++|+.+.. ...+..+||+|+
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L--~~~~~~~fDvV~ 168 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYL--PLIKTFHPDYIY 168 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSH--HHHHHHCCSEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhh--hhccCCCceEEE
Confidence 47899999999999999988765 59999999999999999987654 4 57999999987621 111224799999
Q ss_pred ec
Q psy1107 156 LI 157 (218)
Q Consensus 156 ~~ 157 (218)
+.
T Consensus 169 lD 170 (410)
T 3ll7_A 169 VD 170 (410)
T ss_dssp EC
T ss_pred EC
Confidence 83
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-07 Score=72.94 Aligned_cols=63 Identities=10% Similarity=0.224 Sum_probs=50.1
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD 141 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 141 (218)
...++.+|||||||+|.++. +. .+...+++++|+++.+++.++++.... .++.++++|+...+
T Consensus 18 ~~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~-~~v~~i~~D~~~~~ 80 (252)
T 1qyr_A 18 NPQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLG-PKLTIYQQDAMTFN 80 (252)
T ss_dssp CCCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTG-GGEEEECSCGGGCC
T ss_pred CCCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccC-CceEEEECchhhCC
Confidence 34567899999999999999 65 343223999999999999999886543 47999999987743
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.51 E-value=7.5e-08 Score=74.04 Aligned_cols=80 Identities=13% Similarity=0.202 Sum_probs=56.8
Q ss_pred CCC--cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHH-------HHHHHhCCcccC---CCceEEeccCCCcccccC
Q psy1107 78 VGE--GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRA-------VNFFKLNPLYDA---SKMNVFPCDVTEDDILNQ 145 (218)
Q Consensus 78 ~~~--~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~-------~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~ 145 (218)
.++ .+|||+|||+|..+..++..+ .+|+++|.++.+ ++.++.+....+ .++.+++.|..+. ...
T Consensus 85 ~~g~~~~VLDl~~G~G~dal~lA~~g--~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~--L~~ 160 (258)
T 2oyr_A 85 KGDYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA--LTD 160 (258)
T ss_dssp BTTBCCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH--STT
T ss_pred cCCCCCEEEEcCCcCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHH--HHh
Confidence 455 799999999999999999875 489999999975 444444333322 4688999987652 122
Q ss_pred CCCCcccEEEechhhcC
Q psy1107 146 VPHNSVDIATLIFVLSA 162 (218)
Q Consensus 146 ~~~~~~D~i~~~~~l~~ 162 (218)
++. +||+|++.-.+.+
T Consensus 161 ~~~-~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 161 ITP-RPQVVYLDPMFPH 176 (258)
T ss_dssp CSS-CCSEEEECCCCCC
T ss_pred Ccc-cCCEEEEcCCCCC
Confidence 333 6999998654443
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.3e-07 Score=70.47 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=68.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhc-------CCc-----cEEEEEeCCH---HHHH-----------HHHhCCcc-----
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSW-------SKI-----CYIHACDISP---RAVN-----------FFKLNPLY----- 125 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~-------~~~-----~~v~~~D~s~---~~~~-----------~~~~~~~~----- 125 (218)
..+..+|||+|+|+|..+..++.. .|. .+++++|..+ ..+. .++.....
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~ 137 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL 137 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence 345679999999999988776543 453 5899999876 3333 23322111
Q ss_pred ----------cCCCceEEeccCCCcccccCCCC---CcccEEEechhhcCCCcc-hHHHHHHHHHHhccCCeEEEE
Q psy1107 126 ----------DASKMNVFPCDVTEDDILNQVPH---NSVDIATLIFVLSAIHPN-KFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 126 ----------~~~~i~~~~~d~~~~~~~~~~~~---~~~D~i~~~~~l~~~~~~-~~~~~l~~~~~~Lk~gG~li~ 187 (218)
...++.+..+|+.+. ....+. ..||+|+....-..-.|+ -...++..+.++|+|||.|+.
T Consensus 138 ~g~~r~~~~~~~~~l~l~~GDa~~~--l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 138 PGCHRLLLDEGRVTLDLWFGDINEL--ISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp SEEEEEEEC--CEEEEEEESCHHHH--GGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred cchhheeccCCceEEEEEECcHHHH--HhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 113566777887652 112222 279999984211111112 135789999999999998886
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.42 E-value=5.2e-07 Score=70.12 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=77.5
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC-----CccEEEEEeCCHH--------------------------HHHHHHhCCc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS-----KICYIHACDISPR--------------------------AVNFFKLNPL 124 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~-----~~~~v~~~D~s~~--------------------------~~~~~~~~~~ 124 (218)
....+..|||+|+..|..+..++... ++.+++++|.... .++.+++++.
T Consensus 103 ~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~ 182 (282)
T 2wk1_A 103 GNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFR 182 (282)
T ss_dssp HTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHH
T ss_pred hcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHH
Confidence 34567899999999999988887542 4679999996421 2444555544
Q ss_pred cc---CCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 125 YD---ASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 125 ~~---~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.. ..++.++.+|+.+. ...++.++||+|+.-.-. .+.....++.+...|+|||++++-++.
T Consensus 183 ~~gl~~~~I~li~Gda~et--L~~~~~~~~d~vfIDaD~----y~~~~~~Le~~~p~L~pGGiIv~DD~~ 246 (282)
T 2wk1_A 183 NYDLLDEQVRFLPGWFKDT--LPTAPIDTLAVLRMDGDL----YESTWDTLTNLYPKVSVGGYVIVDDYM 246 (282)
T ss_dssp HTTCCSTTEEEEESCHHHH--STTCCCCCEEEEEECCCS----HHHHHHHHHHHGGGEEEEEEEEESSCT
T ss_pred HcCCCcCceEEEEeCHHHH--HhhCCCCCEEEEEEcCCc----cccHHHHHHHHHhhcCCCEEEEEcCCC
Confidence 33 25799999988552 223445689999875321 123457889999999999999987764
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=9e-07 Score=71.18 Aligned_cols=110 Identities=11% Similarity=0.026 Sum_probs=75.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc---------CCCceEEeccCCCcccccCCCC
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD---------ASKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~---------~~~i~~~~~d~~~~~~~~~~~~ 148 (218)
.++.+||-||.|.|..++.+++..+ .+++.+|+++.+++.+++.+... ..++.++..|.........-..
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 4568999999999999999987654 69999999999999999864321 1347777787654110001123
Q ss_pred CcccEEEechhhc---CCC--cc---hHHHHHHHHHHhccCCeEEEEE
Q psy1107 149 NSVDIATLIFVLS---AIH--PN---KFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 149 ~~~D~i~~~~~l~---~~~--~~---~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
.+||+|+.-..-. ..+ +. -...+++.+++.|+|||+++.-
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4799999742111 111 01 1246788899999999988763
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.4e-06 Score=72.40 Aligned_cols=115 Identities=13% Similarity=0.128 Sum_probs=74.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc----C---------CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW----S---------KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTED 140 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~----~---------~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~ 140 (218)
....++.+|+|++||+|.++..+.+. . ....++|+|+++.+...|+-++-..+ ....+.++|....
T Consensus 213 ~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~ 292 (530)
T 3ufb_A 213 MDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRF 292 (530)
T ss_dssp HCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCS
T ss_pred hccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccC
Confidence 34556779999999999998776543 1 12369999999999999987644333 2345666766543
Q ss_pred ccccCCCCCcccEEEechhhcCC-------------Cc-chHHHHHHHHHHhcc-------CCeEEEEEe
Q psy1107 141 DILNQVPHNSVDIATLIFVLSAI-------------HP-NKFSTVVKNLFIMLK-------SGGIILFRD 189 (218)
Q Consensus 141 ~~~~~~~~~~~D~i~~~~~l~~~-------------~~-~~~~~~l~~~~~~Lk-------~gG~li~~~ 189 (218)
......+..+||+|+++-.+..- +. .....++..+.+.|| +||++.++-
T Consensus 293 ~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 293 PLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp CGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred chhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 22222334579999996544211 00 112356677777776 699887754
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.29 E-value=3.3e-06 Score=65.15 Aligned_cols=85 Identities=16% Similarity=0.055 Sum_probs=63.8
Q ss_pred chHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc-cc
Q psy1107 66 TVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI-LN 144 (218)
Q Consensus 66 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~ 144 (218)
+.....+.+ ...++..+||.+||.|..+..+++. ..+++|+|.++.+++.+++ ... .++.+++.++.+... ..
T Consensus 10 Ll~e~le~L-~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~--~rv~lv~~~f~~l~~~L~ 83 (285)
T 1wg8_A 10 LYQEALDLL-AVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL--PGLTVVQGNFRHLKRHLA 83 (285)
T ss_dssp THHHHHHHH-TCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC--TTEEEEESCGGGHHHHHH
T ss_pred HHHHHHHhh-CCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc--CCEEEEECCcchHHHHHH
Confidence 334444442 3456789999999999999999987 4699999999999999998 554 589999999877431 11
Q ss_pred CCCCCcccEEEe
Q psy1107 145 QVPHNSVDIATL 156 (218)
Q Consensus 145 ~~~~~~~D~i~~ 156 (218)
....+++|.|++
T Consensus 84 ~~g~~~vDgIL~ 95 (285)
T 1wg8_A 84 ALGVERVDGILA 95 (285)
T ss_dssp HTTCSCEEEEEE
T ss_pred HcCCCCcCEEEe
Confidence 222347898886
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=59.85 Aligned_cols=111 Identities=15% Similarity=0.120 Sum_probs=72.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEec-cCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPC-DVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~-d~~~~~~~~~~~~~~~D~ 153 (218)
...+..+|||+||++|.++..++......+|+++|+-..--+.-+ .....+ ..+.|..+ |+.. .+..++|+
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn~v~fk~gvDv~~------~~~~~~Dt 147 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWNIVKLMSGKDVFY------LPPEKCDT 147 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTTSEEEECSCCGGG------CCCCCCSE
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcCceEEEeccceee------cCCccccE
Confidence 346778999999999999987877654458999998553221000 112223 45788877 8643 22246999
Q ss_pred EEechhhcCCCcc-hH---HHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 154 ATLIFVLSAIHPN-KF---STVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 154 i~~~~~l~~~~~~-~~---~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
|+|...-..-.+. +. ..+++.+.++|++ |-++|--+.+..
T Consensus 148 llcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 148 LLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp EEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred EEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 9995543222221 22 3467777899998 788887776666
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.8e-05 Score=63.48 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=63.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.++||+||++|.|+..+++.+ .+|+++|..+-. ..+.. ..++.++..|... ...+..++|+|+|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg--~~V~aVD~~~l~-~~l~~-----~~~V~~~~~d~~~----~~~~~~~~D~vvs 276 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRN--MWVYSVDNGPMA-QSLMD-----TGQVTWLREDGFK----FRPTRSNISWMVC 276 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTT--CEEEEECSSCCC-HHHHT-----TTCEEEECSCTTT----CCCCSSCEEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCC--CEEEEEEhhhcC-hhhcc-----CCCeEEEeCcccc----ccCCCCCcCEEEE
Confidence 4678999999999999999998876 699999976422 11111 2578898988776 3334568999998
Q ss_pred chhhcCCCcchHHHHHHHHHHhcc---CCeEEEEEe
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLK---SGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk---~gG~li~~~ 189 (218)
..+. .+..+...+.++|. .++.++..-
T Consensus 277 Dm~~------~p~~~~~l~~~wl~~~~~~~aI~~lK 306 (375)
T 4auk_A 277 DMVE------KPAKVAALMAQWLVNGWCRETIFNLK 306 (375)
T ss_dssp CCSS------CHHHHHHHHHHHHHTTSCSEEEEEEE
T ss_pred cCCC------ChHHhHHHHHHHHhccccceEEEEEE
Confidence 6542 23344444444444 446555443
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-05 Score=59.57 Aligned_cols=107 Identities=12% Similarity=0.040 Sum_probs=62.5
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCc---eEEec-cCCCcccccCCCCCcc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKM---NVFPC-DVTEDDILNQVPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i---~~~~~-d~~~~~~~~~~~~~~~ 151 (218)
...++.+|||+||++|.|+..++..-....+.|.++.... .. .-.......+ .|..+ |+++ +...++
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~--~~-~P~~~~~~Gv~~i~~~~G~Df~~------~~~~~~ 140 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG--HE-EPMLMQSYGWNIVTMKSGVDVFY------KPSEIS 140 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT--SC-CCCCCCSTTGGGEEEECSCCGGG------SCCCCC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc--cc-CCCcccCCCceEEEeeccCCccC------CCCCCC
Confidence 4567899999999999999888876211233444332210 00 0011010233 33335 8865 223479
Q ss_pred cEEEechhhcCCC--cchHH---HHHHHHHHhccCCe-EEEEEecCC
Q psy1107 152 DIATLIFVLSAIH--PNKFS---TVVKNLFIMLKSGG-IILFRDYGL 192 (218)
Q Consensus 152 D~i~~~~~l~~~~--~~~~~---~~l~~~~~~Lk~gG-~li~~~~~~ 192 (218)
|+|+|-..-. .. .-|.. .++.-+.++|+||| -|++--|.+
T Consensus 141 DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 141 DTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 9999965432 21 11111 25677789999999 999987774
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.00 E-value=6.2e-05 Score=59.98 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=83.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc----------------------CCCceEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD----------------------ASKMNVFPC 135 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~----------------------~~~i~~~~~ 135 (218)
.+..+|+.+|||.......+...++...++-+|. |.+++.-++.+... ..+.+++.+
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 5678999999999998888876556678888887 76666655543221 257889999
Q ss_pred cCCCcccc----cCC-CCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 136 DVTEDDIL----NQV-PHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 136 d~~~~~~~----~~~-~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|+.+.++. ... ......++++..++.+++++....+++.+.... |+|.+++.++-
T Consensus 175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i 234 (334)
T 1rjd_A 175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPI 234 (334)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEecc
Confidence 99985431 222 234568999999999999999999999888876 78877766643
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.3e-05 Score=58.41 Aligned_cols=109 Identities=11% Similarity=0.048 Sum_probs=68.4
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEec-cCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPC-DVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~-d~~~~~~~~~~~~~~~D~ 153 (218)
...+...|||+||++|.++..++......+|+|+|+-..--+.- ......+ .-+.+... |+.. ++..++|+
T Consensus 91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w~lV~~~~~~Dv~~------l~~~~~D~ 163 (321)
T 3lkz_A 91 FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGWNIVTMKSGVDVFY------RPSECCDT 163 (321)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTGGGEEEECSCCTTS------SCCCCCSE
T ss_pred CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCCcceEEEeccCHhh------CCCCCCCE
Confidence 34677899999999999998787765445899999855411000 0011122 22556554 6644 12246999
Q ss_pred EEechhhcCCC-cc-h---HHHHHHHHHHhccCC-eEEEEEecCC
Q psy1107 154 ATLIFVLSAIH-PN-K---FSTVVKNLFIMLKSG-GIILFRDYGL 192 (218)
Q Consensus 154 i~~~~~l~~~~-~~-~---~~~~l~~~~~~Lk~g-G~li~~~~~~ 192 (218)
|+|... ..-+ +. + ...+|+.+.++|++| |-|+|--+.+
T Consensus 164 ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 164 LLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred EEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 998544 2222 11 2 234677778999999 8899877766
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00013 Score=57.61 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=63.3
Q ss_pred cchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc
Q psy1107 65 WTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL 143 (218)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 143 (218)
.+..+..+. ....++..++|..||.|..+..+++. +|..+++|+|.++.+++.++ +. ...++.+++.++.+..-.
T Consensus 44 VLl~Evl~~-L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~~~Rv~lv~~nF~~l~~~ 119 (347)
T 3tka_A 44 VLLDEAVNG-LNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--DDPRFSIIHGPFSALGEY 119 (347)
T ss_dssp TTTHHHHHH-TCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--CCTTEEEEESCGGGHHHH
T ss_pred ccHHHHHHh-hCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--cCCcEEEEeCCHHHHHHH
Confidence 344444444 23567889999999999999999877 57789999999999999995 33 246889999988764211
Q ss_pred c---CCCCCcccEEEe
Q psy1107 144 N---QVPHNSVDIATL 156 (218)
Q Consensus 144 ~---~~~~~~~D~i~~ 156 (218)
. .+. +++|.|++
T Consensus 120 L~~~g~~-~~vDgILf 134 (347)
T 3tka_A 120 VAERDLI-GKIDGILL 134 (347)
T ss_dssp HHHTTCT-TCEEEEEE
T ss_pred HHhcCCC-CcccEEEE
Confidence 1 121 25888887
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.69 E-value=3.8e-05 Score=60.24 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=41.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY 125 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~ 125 (218)
..++..|||++||+|..+..++..+ .+++|+|+++.+++.+++++..
T Consensus 233 ~~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 233 SFVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHH
Confidence 3578899999999999999988876 5999999999999999987543
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00016 Score=57.07 Aligned_cols=112 Identities=12% Similarity=0.070 Sum_probs=81.0
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc----cCCCceEEeccCCCcccccC-----CCCC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY----DASKMNVFPCDVTEDDILNQ-----VPHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~----~~~~i~~~~~d~~~~~~~~~-----~~~~ 149 (218)
...+|+++|||--.....+.. .+...++-+| .|.+++..++.... ...+.+++.+|+.+ ++... +...
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPS 178 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTT
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCC
Confidence 346899999997666544431 2236899999 58888887776542 23578899999987 44322 2223
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
.-=++++..++++++++....+++.+...+.||+.+++......
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~ 222 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLH 222 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCC
Confidence 34578888899999988889999999998889998888665543
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=3.7e-05 Score=75.63 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=52.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcC---C--ccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWS---K--ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~---~--~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.+..+|||||.|+|..+..+.... + ..+|+..|+|+...+.++++++.. .+.....|..+ ..++...+||
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~--di~~~~~d~~~---~~~~~~~~yd 1313 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL--HVTQGQWDPAN---PAPGSLGKAD 1313 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH--TEEEECCCSSC---CCC-----CC
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc--ccccccccccc---cccCCCCcee
Confidence 467899999999998776654432 1 247999999987776666554321 12221122221 0122345799
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++..+++.. .+....+..++++|||||++++.+
T Consensus 1314 lvia~~vl~~t--~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1314 LLVCNCALATL--GDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp EEEEECC----------------------CCEEEEEE
T ss_pred EEEEccccccc--ccHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999988755 366788999999999999998865
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00028 Score=56.52 Aligned_cols=60 Identities=13% Similarity=-0.012 Sum_probs=50.0
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED 140 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 140 (218)
++..|||||.|.|.++..+++.....+++++|+++..+..++... . ..++.++.+|+.+.
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-GSPLQILKRDPYDW 117 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-TSSCEEECSCTTCH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-CCCEEEEECCccch
Confidence 358999999999999999997632248999999999999998765 2 36899999999764
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00025 Score=54.73 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=79.3
Q ss_pred HHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCC
Q psy1107 69 EFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 69 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 148 (218)
.+..++... ++..+||+-+|||.+++++++.. -+++.+|.++..++..++++.. ..++.++..|.........-+.
T Consensus 82 ~yf~~l~~~-n~~~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl~~-~~~~~V~~~D~~~~L~~l~~~~ 157 (283)
T 2oo3_A 82 EYISVIKQI-NLNSTLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHF-NKKVYVNHTDGVSKLNALLPPP 157 (283)
T ss_dssp HHHHHHHHH-SSSSSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCT-TSCEEEECSCHHHHHHHHCSCT
T ss_pred HHHHHHHHh-cCCCceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHhCc-CCcEEEEeCcHHHHHHHhcCCC
Confidence 344444332 45678999999999999998844 4999999999999999999865 4578888888654211111223
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHH--hccCCeEEEEE
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFI--MLKSGGIILFR 188 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~--~Lk~gG~li~~ 188 (218)
.+||+|++--.... .++...++..+.+ .+.|+|.+++.
T Consensus 158 ~~fdLVfiDPPYe~--k~~~~~vl~~L~~~~~r~~~Gi~v~W 197 (283)
T 2oo3_A 158 EKRGLIFIDPSYER--KEEYKEIPYAIKNAYSKFSTGLYCVW 197 (283)
T ss_dssp TSCEEEEECCCCCS--TTHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCccEEEECCCCCC--CcHHHHHHHHHHHhCccCCCeEEEEE
Confidence 47999998533221 1356677766654 45689988885
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00061 Score=52.62 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=65.2
Q ss_pred cCCCcEEEEecC------CCchhHHHHhhcCCc-cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCC
Q psy1107 77 DVGEGVLLEVGC------GVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 77 ~~~~~~vLDiGc------G~G~~~~~~~~~~~~-~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
.+.+.+|||+|+ -+|.+ .+.+.+|. +.++++|+.+-. .... .++++|..... ..+
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~----------sda~-~~IqGD~~~~~-----~~~ 168 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV----------SDAD-STLIGDCATVH-----TAN 168 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB----------CSSS-EEEESCGGGEE-----ESS
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc----------cCCC-eEEEccccccc-----cCC
Confidence 356789999997 46663 33344665 599999996632 0112 45888865411 135
Q ss_pred cccEEEechhh--c-CCC------cchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 150 SVDIATLIFVL--S-AIH------PNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 150 ~~D~i~~~~~l--~-~~~------~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
+||+|++-..- . +.. ..-.+..+.-+.+.|+|||-|++--+.....
T Consensus 169 k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~ 223 (344)
T 3r24_A 169 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN 223 (344)
T ss_dssp CEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC
T ss_pred CCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCH
Confidence 89999984321 1 111 1135677788899999999999987766653
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00055 Score=52.54 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=40.6
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL 124 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~ 124 (218)
..++..|||+.||+|..+..+...+ .+++|+|+++..++.+++++.
T Consensus 210 ~~~~~~vlD~f~GsGtt~~~a~~~g--r~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 210 SNPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHH
Confidence 4678899999999999999888776 699999999999999988754
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0079 Score=48.64 Aligned_cols=79 Identities=14% Similarity=-0.051 Sum_probs=57.0
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CCCCCcccEEEe
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QVPHNSVDIATL 156 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~~~~~D~i~~ 156 (218)
.+++|+.||.|.++..+...+-. .+.++|+++.+++..+.+.. +..+++.|+.+..... ......+|+|+.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~-~v~avE~d~~a~~t~~~N~~----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~g 77 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFD-VKMAVEIDQHAINTHAINFP----RSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIG 77 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCE-EEEEECSCHHHHHHHHHHCT----TSEEECCCGGGCCHHHHHHHHCSCCCCCEEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCc-EEEEEeCCHHHHHHHHHhCC----CCceEecChhhcCHHHHHhhcccCCCeeEEEe
Confidence 58999999999999999887732 67799999999998887643 4567778887642110 013357999998
Q ss_pred chhhcCCC
Q psy1107 157 IFVLSAIH 164 (218)
Q Consensus 157 ~~~l~~~~ 164 (218)
......++
T Consensus 78 gpPCQ~fS 85 (376)
T 3g7u_A 78 GPPCQGFS 85 (376)
T ss_dssp CCCCCTTC
T ss_pred cCCCCCcc
Confidence 65544443
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0063 Score=46.44 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=71.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhc-------CCccEEEEEe-----CCHH----------------------HHHH---HH
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSW-------SKICYIHACD-----ISPR----------------------AVNF---FK 120 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~-------~~~~~v~~~D-----~s~~----------------------~~~~---~~ 120 (218)
.-+..|+|+|+-.|..+..++.. ++..+++++| ..+. .+.. ..
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 44679999999999988876542 4567999999 2210 0111 11
Q ss_pred hC---CcccCCCceEEeccCCCcc--cccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 121 LN---PLYDASKMNVFPCDVTEDD--ILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 121 ~~---~~~~~~~i~~~~~d~~~~~--~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
++ ......++.++.+++.+.. +....+..++|+|..-.- . .+.....++.+...|+|||++++-+|.
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D---~-Y~~t~~~le~~~p~l~~GGvIv~DD~~ 219 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD---L-YEPTKAVLEAIRPYLTKGSIVAFDELD 219 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC---C-HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc---c-cchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 12 1112367999999876531 111234557999987542 1 234556788899999999999998874
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0031 Score=50.35 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=54.5
Q ss_pred CcEEEEecCCCchhHHHHhhcCCc-cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~-~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
..+++|+.||.|.++..+...+.. ..++++|+++.+++..+.+.. +..++..|+.+... ..++...+|+++...
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~----~~~~~~~Di~~~~~-~~~~~~~~D~l~~gp 76 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP----HTQLLAKTIEGITL-EEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----TSCEECSCGGGCCH-HHHHHHCCSEEEECC
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc----ccccccCCHHHccH-hHcCcCCcCEEEEcC
Confidence 468999999999999999877632 368999999999999998854 34466778766321 011112589999865
Q ss_pred hhcCC
Q psy1107 159 VLSAI 163 (218)
Q Consensus 159 ~l~~~ 163 (218)
....+
T Consensus 77 PCq~f 81 (343)
T 1g55_A 77 PCQPF 81 (343)
T ss_dssp C----
T ss_pred CCcch
Confidence 54433
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.033 Score=44.19 Aligned_cols=110 Identities=13% Similarity=0.106 Sum_probs=73.4
Q ss_pred CCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcc------------------------cCCCceEE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLY------------------------DASKMNVF 133 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~------------------------~~~~i~~~ 133 (218)
+..+|+-+|||.-.....+... .+...++=+|. |..++.=++.... ...+.+++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 5679999999987776666543 23467888887 4444432221110 13578899
Q ss_pred eccCCCcccc------cCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 134 PCDVTEDDIL------NQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 134 ~~d~~~~~~~------~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+|+.+.... ..+.....-++++..++.+++++....+++.+.... |+|.+++.+.
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~ 230 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQ 230 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEec
Confidence 9999874321 124444556888889999999989999999888876 4555555553
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0074 Score=47.82 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=53.1
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
..+++|+.||.|.++..+...+- -.+.++|+++.+++..+.+.... . +.|+.+... ..++ .+|+|+....
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~-~~v~~~e~d~~a~~t~~~N~~~~---~---~~Di~~~~~-~~~~--~~D~l~~gpP 80 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEK---P---EGDITQVNE-KTIP--DHDILCAGFP 80 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCC---C---BSCGGGSCG-GGSC--CCSEEEEECC
T ss_pred CCcEEEECCCcCHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHcCCC---C---cCCHHHcCH-hhCC--CCCEEEECCC
Confidence 46999999999999999988764 36888999999999988874321 1 567665321 1122 5899998655
Q ss_pred hcCC
Q psy1107 160 LSAI 163 (218)
Q Consensus 160 l~~~ 163 (218)
...+
T Consensus 81 CQ~f 84 (327)
T 2c7p_A 81 CQAF 84 (327)
T ss_dssp CTTT
T ss_pred CCCc
Confidence 4444
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.014 Score=45.61 Aligned_cols=108 Identities=14% Similarity=0.108 Sum_probs=60.3
Q ss_pred CCCcEEEEecCCCchhHHHHh----hcCCcc--EEEEEeCCH------------HHHHHHHhCC-cccCC--CceEEecc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLL----SWSKIC--YIHACDISP------------RAVNFFKLNP-LYDAS--KMNVFPCD 136 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~----~~~~~~--~v~~~D~s~------------~~~~~~~~~~-~~~~~--~i~~~~~d 136 (218)
.+..+|||+|.|+|....... +..|.. +++.+|-.+ .......... ...+. .+.+..+|
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 455799999999998654322 224443 566666321 1111111111 11122 34456667
Q ss_pred CCCcccccCCCCCcccEEEechhhcCCCcchH-HHHHHHHHHhccCCeEEEE
Q psy1107 137 VTEDDILNQVPHNSVDIATLIFVLSAIHPNKF-STVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 137 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~-~~~l~~~~~~Lk~gG~li~ 187 (218)
+.+. ...++...+|+++.-..--.-.|+.+ ..++..++++++|||.|.-
T Consensus 175 a~~~--l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 175 ARKR--IKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp HHHH--GGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred HHHH--HhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 6542 22344557999998432111112322 4788999999999998775
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0037 Score=49.48 Aligned_cols=50 Identities=10% Similarity=-0.013 Sum_probs=42.7
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA 127 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~ 127 (218)
...++..|||.-||+|..+......+ ++.+|+|+++...+.++.+.....
T Consensus 249 ~~~~~~~VlDpF~GsGtt~~aa~~~g--r~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 249 LTEPDDLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp HCCTTCEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGGSCSC
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHhcc
Confidence 35678899999999999998888776 699999999999999998865433
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.013 Score=45.79 Aligned_cols=78 Identities=9% Similarity=-0.015 Sum_probs=54.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccE-EEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCC-CCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICY-IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVP-HNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~-v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~~~D~ 153 (218)
......+++|+.||.|.++..+...+-... +.++|+++.+.+..+.+.. ...+...|+.+.... .++ .+.+|+
T Consensus 12 ~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~----~~~~~~~DI~~i~~~-~i~~~~~~Dl 86 (295)
T 2qrv_A 12 EKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ----GKIMYVGDVRSVTQK-HIQEWGPFDL 86 (295)
T ss_dssp CCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT----TCEEEECCGGGCCHH-HHHHTCCCSE
T ss_pred ccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC----CCceeCCChHHccHH-HhcccCCcCE
Confidence 345667999999999999988887764333 6999999999888776642 345667787764211 111 136899
Q ss_pred EEech
Q psy1107 154 ATLIF 158 (218)
Q Consensus 154 i~~~~ 158 (218)
++...
T Consensus 87 l~ggp 91 (295)
T 2qrv_A 87 VIGGS 91 (295)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 98854
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.01 Score=48.51 Aligned_cols=49 Identities=6% Similarity=0.010 Sum_probs=40.8
Q ss_pred cCCCcEEEEecCCCchhHHHHh-hcCC-ccEEEEEeCCHHHHHHHHhCCcc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLL-SWSK-ICYIHACDISPRAVNFFKLNPLY 125 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~-~~~~-~~~v~~~D~s~~~~~~~~~~~~~ 125 (218)
..++..++|+|++.|..+..++ ...+ ..+|+++|+++...+.++++...
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4678899999999999999887 4444 36999999999999999887543
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.013 Score=46.46 Aligned_cols=80 Identities=14% Similarity=-0.010 Sum_probs=55.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCc-cEE-EEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKI-CYI-HACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~~v-~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.+..+++|+.||.|.++.-+...+-. -.+ .++|+++.+.+..+.+... . ++..|+.+... ..++...+|+++
T Consensus 8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~---~--~~~~DI~~~~~-~~i~~~~~Dil~ 81 (327)
T 3qv2_A 8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE---E--VQVKNLDSISI-KQIESLNCNTWF 81 (327)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC---C--CBCCCTTTCCH-HHHHHTCCCEEE
T ss_pred CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC---C--cccCChhhcCH-HHhccCCCCEEE
Confidence 34679999999999999988877632 256 7999999999988877432 1 45677766321 112223689999
Q ss_pred echhhcCC
Q psy1107 156 LIFVLSAI 163 (218)
Q Consensus 156 ~~~~l~~~ 163 (218)
.......+
T Consensus 82 ggpPCQ~f 89 (327)
T 3qv2_A 82 MSPPCQPY 89 (327)
T ss_dssp ECCCCTTC
T ss_pred ecCCccCc
Confidence 86554444
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.05 Score=37.17 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=60.4
Q ss_pred cEEEEecCCC-chhHH-HHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGV-GNFIF-PLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~-G~~~~-~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.+|+=+|||. |.... .+...+ ..++++|.++..++.++.. .+.++.+|..+...+....-..+|++++.
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g--~~v~vid~~~~~~~~~~~~------g~~~i~gd~~~~~~l~~a~i~~ad~vi~~- 78 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASD--IPLVVIETSRTRVDELRER------GVRAVLGNAANEEIMQLAHLECAKWLILT- 78 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHHT------TCEEEESCTTSHHHHHHTTGGGCSEEEEC-
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHc------CCCEEECCCCCHHHHHhcCcccCCEEEEE-
Confidence 5788888863 33322 222223 5899999999998887753 46678888877544332223468888753
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
.+.+.....+-...+.+.|+..++......
T Consensus 79 ----~~~~~~n~~~~~~a~~~~~~~~iiar~~~~ 108 (140)
T 3fwz_A 79 ----IPNGYEAGEIVASARAKNPDIEIIARAHYD 108 (140)
T ss_dssp ----CSCHHHHHHHHHHHHHHCSSSEEEEEESSH
T ss_pred ----CCChHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 232222233344556677888877766443
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.023 Score=45.69 Aligned_cols=100 Identities=16% Similarity=0.099 Sum_probs=63.7
Q ss_pred hcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc---cCCCCCcc
Q psy1107 76 QDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL---NQVPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~~~~~ 151 (218)
...++.+||-+|+|. |..+.++++..-...|+++|.++..++.++..-. ..++ |..+.++. .....+.+
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-----~~vi--~~~~~~~~~~~~~~~~gg~ 259 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-----THVI--NSKTQDPVAAIKEITDGGV 259 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-----SEEE--ETTTSCHHHHHHHHTTSCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-----CEEe--cCCccCHHHHHHHhcCCCC
Confidence 456788999999985 7788888765321279999999999998876411 1111 11111110 11112269
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+|+.. .. ....+..+.+.|+++|.+++...
T Consensus 260 D~vid~-----~g---~~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 260 NFALES-----TG---SPEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp EEEEEC-----SC---CHHHHHHHHHTEEEEEEEEECCC
T ss_pred cEEEEC-----CC---CHHHHHHHHHHHhcCCEEEEeCC
Confidence 999853 21 12467888999999999988653
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.092 Score=41.34 Aligned_cols=74 Identities=12% Similarity=0.026 Sum_probs=53.1
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhh
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVL 160 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l 160 (218)
.+|||+-||.|.++.-+.+.+-. .+.++|+++.+.+..+.+.. ..++..|+.+... ..++ .+|+++.....
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~-~v~a~e~d~~a~~ty~~N~~-----~~~~~~DI~~i~~-~~~~--~~D~l~ggpPC 71 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFR-IICANEYDKSIWKTYESNHS-----AKLIKGDISKISS-DEFP--KCDGIIGGPPS 71 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCE-EEEEEECCTTTHHHHHHHCC-----SEEEESCGGGCCG-GGSC--CCSEEECCCCG
T ss_pred CeEEEeCcCccHHHHHHHHCCCE-EEEEEeCCHHHHHHHHHHCC-----CCcccCChhhCCH-hhCC--cccEEEecCCC
Confidence 37999999999999888777643 67799999999998887743 3566788876432 1232 58999885544
Q ss_pred cCC
Q psy1107 161 SAI 163 (218)
Q Consensus 161 ~~~ 163 (218)
..+
T Consensus 72 Q~f 74 (331)
T 3ubt_Y 72 QSW 74 (331)
T ss_dssp GGT
T ss_pred CCc
Confidence 433
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.1 Score=41.74 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=62.7
Q ss_pred CCcEEEEec-CC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc--ccccCCCCCcccEE
Q psy1107 79 GEGVLLEVG-CG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED--DILNQVPHNSVDIA 154 (218)
Q Consensus 79 ~~~~vLDiG-cG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~~D~i 154 (218)
++.+||=.| +| .|..+.++++....++|++++.++..++.+++.-. . .++ |..+. ........+.+|+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGa----d-~vi--~~~~~~~~~v~~~~~~g~Dvv 243 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGA----H-HVI--DHSKPLAAEVAALGLGAPAFV 243 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTC----S-EEE--CTTSCHHHHHHTTCSCCEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCC----C-EEE--eCCCCHHHHHHHhcCCCceEE
Confidence 677899998 54 68888888875224699999999999999876421 1 111 11111 00112233479988
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+.. . .-...+..+.+.|+++|.+++.
T Consensus 244 id~-----~---g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 244 FST-----T---HTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEC-----S---CHHHHHHHHHHHSCTTCEEEEC
T ss_pred EEC-----C---CchhhHHHHHHHhcCCCEEEEE
Confidence 852 2 2235678888999999999886
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.055 Score=43.89 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=65.8
Q ss_pred hhcCCCcEEEEecCCC-chhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc-c----cCCC
Q psy1107 75 NQDVGEGVLLEVGCGV-GNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI-L----NQVP 147 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~----~~~~ 147 (218)
....++.+||-+|+|. |..+.++++.. .+ +|+++|.++..++.++.. +. ..+ |..+.+. . ....
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l----Ga--~~i--~~~~~~~~~~~~~~~~~ 251 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLSDA----GF--ETI--DLRNSAPLRDQIDQILG 251 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHTT----TC--EEE--ETTSSSCHHHHHHHHHS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHc----CC--cEE--cCCCcchHHHHHHHHhC
Confidence 3456788999999975 88888888753 24 899999999999998754 11 222 2222111 0 0111
Q ss_pred CCcccEEEechhhcCCC------cchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 148 HNSVDIATLIFVLSAIH------PNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
...+|+|+....-.... .......+..+.+.|+++|.+++...
T Consensus 252 g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 252 KPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp SSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred CCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence 22699998643211000 00112467888899999999887543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.044 Score=43.19 Aligned_cols=47 Identities=11% Similarity=-0.102 Sum_probs=40.5
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCH---HHHHHHHhCCc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISP---RAVNFFKLNPL 124 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~---~~~~~~~~~~~ 124 (218)
...++..|||.-||+|..+......+ .+.+|+|+++ ..++.+.++..
T Consensus 239 ~~~~~~~vlDpF~GsGtt~~aa~~~~--r~~ig~e~~~~~~~~~~~~~~Rl~ 288 (319)
T 1eg2_A 239 LSHPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLTFLQ 288 (319)
T ss_dssp HSCTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHHHC-
T ss_pred hCCCCCEEEecCCCCCHHHHHHHHcC--CcEEEEECCccHHHHHHHHHHHHH
Confidence 35678899999999999998888776 6999999999 99999988765
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.02 Score=45.41 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=54.2
Q ss_pred CcEEEEecCCCchhHHHHhhcCCc-cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~-~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
..+++|+.||.|.++.-+...+.. -.+.++|+++.+.+..+.+.. ...++..|+.+... ..++...+|+++...
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~----~~~~~~~DI~~~~~-~~~~~~~~D~l~ggp 77 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP----ETNLLNRNIQQLTP-QVIKKWNVDTILMSP 77 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----TSCEECCCGGGCCH-HHHHHTTCCEEEECC
T ss_pred CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC----CCceeccccccCCH-HHhccCCCCEEEecC
Confidence 358999999999999888877642 257899999999998887753 33456677765321 112223589888754
Q ss_pred hhcCC
Q psy1107 159 VLSAI 163 (218)
Q Consensus 159 ~l~~~ 163 (218)
....+
T Consensus 78 PCQ~f 82 (333)
T 4h0n_A 78 PCQPF 82 (333)
T ss_dssp CCCCS
T ss_pred CCcch
Confidence 43333
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.071 Score=42.52 Aligned_cols=98 Identities=12% Similarity=0.099 Sum_probs=63.5
Q ss_pred hcCCCcEEEEecCCC-chhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCC---Ccc----cccCC
Q psy1107 76 QDVGEGVLLEVGCGV-GNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVT---EDD----ILNQV 146 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~---~~~----~~~~~ 146 (218)
...++.+||-+|+|. |..+.++++.. .+ +|+++|.++..++.++..-. . .++ |.. ..+ +....
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa----~-~vi--~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGA----D-LVL--QISKESPQEIARKVEGQL 239 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTC----S-EEE--ECSSCCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCC----C-EEE--cCcccccchHHHHHHHHh
Confidence 456788999999874 77888887754 34 89999999999998876521 1 121 111 011 10111
Q ss_pred CCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 147 PHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
. ..+|+|+.. .. ....+..+.++|+++|.+++...
T Consensus 240 ~-~g~D~vid~-----~g---~~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 240 G-CKPEVTIEC-----TG---AEASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp T-SCCSEEEEC-----SC---CHHHHHHHHHHSCTTCEEEECSC
T ss_pred C-CCCCEEEEC-----CC---ChHHHHHHHHHhcCCCEEEEEec
Confidence 1 368999853 21 12456778899999999988654
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.044 Score=43.46 Aligned_cols=102 Identities=9% Similarity=0.028 Sum_probs=65.6
Q ss_pred hcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEecc--CCCcccccCCCCCccc
Q psy1107 76 QDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCD--VTEDDILNQVPHNSVD 152 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d--~~~~~~~~~~~~~~~D 152 (218)
...++.+||-+|+|. |..+.++++.....+|+++|.++..++.+++.-. ..++..+ ..+ .+........+|
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa-----~~~i~~~~~~~~-~v~~~t~g~g~d 241 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA-----DAAVKSGAGAAD-AIRELTGGQGAT 241 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC-----SEEEECSTTHHH-HHHHHHGGGCEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-----CEEEcCCCcHHH-HHHHHhCCCCCe
Confidence 456788999999874 7788888765423699999999999999987521 1111111 000 000011122689
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+|+-. .. -...+..+.+.|+++|.+++....
T Consensus 242 ~v~d~-----~G---~~~~~~~~~~~l~~~G~iv~~G~~ 272 (345)
T 3jv7_A 242 AVFDF-----VG---AQSTIDTAQQVVAVDGHISVVGIH 272 (345)
T ss_dssp EEEES-----SC---CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred EEEEC-----CC---CHHHHHHHHHHHhcCCEEEEECCC
Confidence 88842 21 124678889999999999986543
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.091 Score=42.17 Aligned_cols=101 Identities=14% Similarity=0.137 Sum_probs=64.8
Q ss_pred hhcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc---cC---CC
Q psy1107 75 NQDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL---NQ---VP 147 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~---~~ 147 (218)
....++.+||-.|+|. |..+.++++..-..+|+++|.++...+.++..-. . .. .|....++. .. ..
T Consensus 178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~-~v--i~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGA----T-AT--VDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC----S-EE--ECTTSSCHHHHHHSTTSSS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC----C-EE--ECCCCcCHHHHHHhhhhcc
Confidence 3456788999999874 7778888775422289999999999998876411 1 11 122221110 11 22
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+.+|+|+.. .. ....+..+.+.|+++|.+++...
T Consensus 251 ~gg~Dvvid~-----~G---~~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 251 PGGVDVVIEC-----AG---VAETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp TTCEEEEEEC-----SC---CHHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCCEEEEC-----CC---CHHHHHHHHHHhccCCEEEEEec
Confidence 3479999852 21 12467888899999999988653
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.13 Score=41.67 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=34.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhc-------CCccEEEEEeCCHHHHHHHHhCC
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSW-------SKICYIHACDISPRAVNFFKLNP 123 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~-------~~~~~v~~~D~s~~~~~~~~~~~ 123 (218)
+.+..|+|+|.|+|.++..++.. ....+|..+|+|+...+.-++..
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L 131 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL 131 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence 34568999999999998777643 12358999999998776555443
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.089 Score=41.60 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=64.7
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC--CCCccc
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV--PHNSVD 152 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~--~~~~~D 152 (218)
...++.+||-.|+| .|..+.++++.. .++|+++|.++..++.+++.-. . ..+ |..+.+....+ ..+.+|
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa----~-~~i--~~~~~~~~~~~~~~~g~~d 234 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGA----E-VAV--NARDTDPAAWLQKEIGGAH 234 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC----S-EEE--ETTTSCHHHHHHHHHSSEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCC----C-EEE--eCCCcCHHHHHHHhCCCCC
Confidence 45678899999997 488888888764 3599999999999999887521 1 111 22221111000 112688
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+|+... .....+..+.+.|+++|.+++....
T Consensus 235 ~vid~~--------g~~~~~~~~~~~l~~~G~iv~~G~~ 265 (340)
T 3s2e_A 235 GVLVTA--------VSPKAFSQAIGMVRRGGTIALNGLP 265 (340)
T ss_dssp EEEESS--------CCHHHHHHHHHHEEEEEEEEECSCC
T ss_pred EEEEeC--------CCHHHHHHHHHHhccCCEEEEeCCC
Confidence 887531 1134678888999999999886543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.14 Score=44.78 Aligned_cols=108 Identities=18% Similarity=0.267 Sum_probs=70.3
Q ss_pred CCcEEEEecCCCchhHHHHhhcCC--------ccEEEEEeCCHHHHHHHHhCCcc-------------------------
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSK--------ICYIHACDISPRAVNFFKLNPLY------------------------- 125 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~--------~~~v~~~D~s~~~~~~~~~~~~~------------------------- 125 (218)
+..+|+-+|||.-.....+....+ ...++=+|.. ..++.-++.+..
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p-~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYS-DLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECH-HHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccH-HHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 568999999998777777755433 4566777763 333222221110
Q ss_pred cCCCceEEeccCCCcccc------cCC-CCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 126 DASKMNVFPCDVTEDDIL------NQV-PHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 126 ~~~~i~~~~~d~~~~~~~------~~~-~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
...+.+++.+|+.+.... ..+ ....--++++..++.+++++....+++.+.+. ++|.+++.+
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e 254 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILE 254 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEE
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEE
Confidence 013678889999874221 122 33344578888899999999999999988864 677777655
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.42 Score=32.26 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=57.4
Q ss_pred CcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
..+|+=+|+|. .+..++... ...+|+++|.++..++.+... ...++.+|..+........-..+|+|++.
T Consensus 6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~------~~~~~~gd~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLEDE------GFDAVIADPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT------TCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC------CCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence 35788888863 444443321 135899999999988877653 35677888887544332333468888763
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
. +.......+-...+.+. .+.++.....
T Consensus 78 ~-----~~~~~n~~~~~~a~~~~-~~~iia~~~~ 105 (141)
T 3llv_A 78 G-----SDDEFNLKILKALRSVS-DVYAIVRVSS 105 (141)
T ss_dssp C-----SCHHHHHHHHHHHHHHC-CCCEEEEESC
T ss_pred c-----CCHHHHHHHHHHHHHhC-CceEEEEEcC
Confidence 2 22233333344444455 5666665543
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.18 Score=41.21 Aligned_cols=103 Identities=16% Similarity=0.085 Sum_probs=65.7
Q ss_pred CcEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
..+|+=+|+|. ++..+++. ..+..|+++|.++..++.++.. .+.++.+|.++.+.+....-...|+|++.
T Consensus 4 ~~~viIiG~Gr--~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~------g~~vi~GDat~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 4 GMRVIIAGFGR--FGQITGRLLLSSGVKMVVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT------TCCCEESCTTCHHHHHHTTTTTCSEEEEC
T ss_pred CCeEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC------CCeEEEcCCCCHHHHHhcCCCccCEEEEC
Confidence 35678888763 33333322 1235899999999999988753 35678899988765444434468888763
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
++.+.....+-...+.+.|+..+++........
T Consensus 76 -----~~~~~~n~~i~~~ar~~~p~~~Iiara~~~~~~ 108 (413)
T 3l9w_A 76 -----IDDPQTNLQLTEMVKEHFPHLQIIARARDVDHY 108 (413)
T ss_dssp -----CSSHHHHHHHHHHHHHHCTTCEEEEEESSHHHH
T ss_pred -----CCChHHHHHHHHHHHHhCCCCeEEEEECCHHHH
Confidence 232334445555667778988888876544433
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.07 E-value=0.039 Score=44.70 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=65.5
Q ss_pred hhcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc-----cccCCCC
Q psy1107 75 NQDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD-----ILNQVPH 148 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~~ 148 (218)
....++.+||-+|+|. |..+.++++..-...|+++|.++..++.++..- . .. .|..+.+ +......
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lG----a--~~--i~~~~~~~~~~~v~~~t~g 252 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG----F--EI--ADLSLDTPLHEQIAALLGE 252 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT----C--EE--EETTSSSCHHHHHHHHHSS
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcC----C--cE--EccCCcchHHHHHHHHhCC
Confidence 3456788999999874 788888887642227999999999999997651 1 11 1222111 1001122
Q ss_pred CcccEEEechhhcCC-------CcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSAI-------HPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~-------~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..+|+|+........ ...+....+..+.++|+++|.+++..
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 253 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 368999864321100 00112346788899999999998755
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.096 Score=45.69 Aligned_cols=108 Identities=17% Similarity=0.079 Sum_probs=62.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhc-------CC-----ccEEEEEeC---CHHHHHHHHhCCc-----------cc-----
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSW-------SK-----ICYIHACDI---SPRAVNFFKLNPL-----------YD----- 126 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~-------~~-----~~~v~~~D~---s~~~~~~~~~~~~-----------~~----- 126 (218)
.+..+|+|+|.|+|.....+.+. +| ..+++.++. +...+..+..... ..
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 45679999999999877666443 12 257999998 4455544332211 00
Q ss_pred --------C--CCceEEeccCCCcccccCCC---CCcccEEEechhhcCCCcch-HHHHHHHHHHhccCCeEEEE
Q psy1107 127 --------A--SKMNVFPCDVTEDDILNQVP---HNSVDIATLIFVLSAIHPNK-FSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 127 --------~--~~i~~~~~d~~~~~~~~~~~---~~~~D~i~~~~~l~~~~~~~-~~~~l~~~~~~Lk~gG~li~ 187 (218)
. ..+.+..+|+.+. ...+. ...+|.+++...--.-.|+. ...++..+.++++|||.+..
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~--l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTL--LPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHH--GGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred CceEEEecCCcEEEEEEccCHHHH--HhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 0 1344555565442 12222 35799998743211111222 25788999999999997664
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.01 E-value=0.038 Score=44.01 Aligned_cols=101 Identities=15% Similarity=0.057 Sum_probs=64.6
Q ss_pred hhcCCCcEEEEecCCC-chhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc----ccCCCC
Q psy1107 75 NQDVGEGVLLEVGCGV-GNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI----LNQVPH 148 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~ 148 (218)
....++.+||-+|+|. |..+.++++.. .+ +|+++|.++..++.+++.-. ..++ |..+.++ ......
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa-----~~vi--~~~~~~~~~~v~~~t~g 233 (352)
T 3fpc_A 162 ANIKLGDTVCVIGIGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIALEYGA-----TDII--NYKNGDIVEQILKATDG 233 (352)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHHHHTC-----CEEE--CGGGSCHHHHHHHHTTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCC-----ceEE--cCCCcCHHHHHHHHcCC
Confidence 3456788999999874 77788887764 34 79999999998888876521 1111 1111111 111223
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
..+|+|+.. .. -...+..+.+.|+++|.+++....
T Consensus 234 ~g~D~v~d~-----~g---~~~~~~~~~~~l~~~G~~v~~G~~ 268 (352)
T 3fpc_A 234 KGVDKVVIA-----GG---DVHTFAQAVKMIKPGSDIGNVNYL 268 (352)
T ss_dssp CCEEEEEEC-----SS---CTTHHHHHHHHEEEEEEEEECCCC
T ss_pred CCCCEEEEC-----CC---ChHHHHHHHHHHhcCCEEEEeccc
Confidence 369999852 21 113677788999999999986543
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.11 Score=45.28 Aligned_cols=108 Identities=15% Similarity=0.090 Sum_probs=62.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhc-------CC-----ccEEEEEeC---CHHHHHHHHhCCcc-----------cC----
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSW-------SK-----ICYIHACDI---SPRAVNFFKLNPLY-----------DA---- 127 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~-------~~-----~~~v~~~D~---s~~~~~~~~~~~~~-----------~~---- 127 (218)
.+..+|+|+|.|+|......... +| ..++++++. +...+..+...... .+
T Consensus 65 ~~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (676)
T 3ps9_A 65 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 144 (676)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCS
T ss_pred CCceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCC
Confidence 34579999999999776555432 11 247999998 77776644432110 11
Q ss_pred -----------CCceEEeccCCCcccccCCC---CCcccEEEechhhcCCCcch-HHHHHHHHHHhccCCeEEEE
Q psy1107 128 -----------SKMNVFPCDVTEDDILNQVP---HNSVDIATLIFVLSAIHPNK-FSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 128 -----------~~i~~~~~d~~~~~~~~~~~---~~~~D~i~~~~~l~~~~~~~-~~~~l~~~~~~Lk~gG~li~ 187 (218)
..+.+..+|+.+. ...+. ...+|++++-..-....|+. -..++..+.++++|||.+..
T Consensus 145 ~~~~~~~~~~~~~l~l~~gd~~~~--l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 145 GCHRLLLDAGRVTLDLWFGDINEL--TSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEEEGGGTEEEEEEESCHHHH--GGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred CceEEEecCCcEEEEEecCCHHHH--HHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 1122333444331 11121 35799998743211111222 24788999999999997765
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=93.82 E-value=0.38 Score=40.11 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=56.0
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc--CC----------
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN--QV---------- 146 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~---------- 146 (218)
...+++|+.||.|.++.-+...+- -.+.++|+++.+.+.-+.+.... ....++..|+.+..... .+
T Consensus 87 ~~~~viDLFaG~GGlslG~~~aG~-~~v~avE~d~~A~~ty~~N~~~~-p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~ 164 (482)
T 3me5_A 87 YAFRFIDLFAGIGGIRRGFESIGG-QCVFTSEWNKHAVRTYKANHYCD-PATHHFNEDIRDITLSHQEGVSDEAAAEHIR 164 (482)
T ss_dssp CSEEEEEESCTTSHHHHHHHTTTE-EEEEEECCCHHHHHHHHHHSCCC-TTTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred ccceEEEecCCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHhcccC-CCcceeccchhhhhhccccccchhhHHhhhh
Confidence 357999999999999988877663 25889999999988888775322 24456667776532100 00
Q ss_pred -CCCcccEEEechhhcCCC
Q psy1107 147 -PHNSVDIATLIFVLSAIH 164 (218)
Q Consensus 147 -~~~~~D~i~~~~~l~~~~ 164 (218)
....+|+++.......++
T Consensus 165 ~~~~~~Dvl~gGpPCQ~FS 183 (482)
T 3me5_A 165 QHIPEHDVLLAGFPCQPFS 183 (482)
T ss_dssp HHSCCCSEEEEECCCCCC-
T ss_pred hcCCCCCEEEecCCCcchh
Confidence 013589998866555444
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.1 Score=41.45 Aligned_cols=94 Identities=12% Similarity=0.036 Sum_probs=63.2
Q ss_pred hcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+||-+|+|. |..+.++++.. .++|++++.++...+.+++.- .. .++ .+. ..+.. .+|+|
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lG----a~-~v~-~~~------~~~~~-~~D~v 238 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMG----VK-HFY-TDP------KQCKE-ELDFI 238 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTT----CS-EEE-SSG------GGCCS-CEEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcC----CC-eec-CCH------HHHhc-CCCEE
Confidence 456788999999874 77788887764 359999999999999888641 11 122 221 11222 79999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+.. .... ..+..+.+.|+++|.+++....
T Consensus 239 id~-----~g~~---~~~~~~~~~l~~~G~iv~~G~~ 267 (348)
T 3two_A 239 IST-----IPTH---YDLKDYLKLLTYNGDLALVGLP 267 (348)
T ss_dssp EEC-----CCSC---CCHHHHHTTEEEEEEEEECCCC
T ss_pred EEC-----CCcH---HHHHHHHHHHhcCCEEEEECCC
Confidence 853 2111 2456778899999999987544
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.18 Score=40.20 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=65.4
Q ss_pred hhcCCCcEEEEecCCC-chhHHHHhhcCCccE-EEEEeCCHHHHHHHHhCCcccCCCceEEeccCC-Cccc----ccCCC
Q psy1107 75 NQDVGEGVLLEVGCGV-GNFIFPLLSWSKICY-IHACDISPRAVNFFKLNPLYDASKMNVFPCDVT-EDDI----LNQVP 147 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~-v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~----~~~~~ 147 (218)
....++.+||=+|+|. |..+.++++.. .++ |+++|.++..++.+++. . ..+.....+.. ..++ .....
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-~---~~~~~~~~~~~~~~~~~~~v~~~t~ 249 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI-C---PEVVTHKVERLSAEESAKKIVESFG 249 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH-C---TTCEEEECCSCCHHHHHHHHHHHTS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-c---hhcccccccccchHHHHHHHHHHhC
Confidence 3456778899899873 77888887764 244 99999999999999875 2 12211121111 1111 11122
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
...+|+|+.. .. -...+..+.+.|+++|.+++....
T Consensus 250 g~g~Dvvid~-----~g---~~~~~~~~~~~l~~~G~iv~~G~~ 285 (363)
T 3m6i_A 250 GIEPAVALEC-----TG---VESSIAAAIWAVKFGGKVFVIGVG 285 (363)
T ss_dssp SCCCSEEEEC-----SC---CHHHHHHHHHHSCTTCEEEECCCC
T ss_pred CCCCCEEEEC-----CC---ChHHHHHHHHHhcCCCEEEEEccC
Confidence 3478999852 21 124677888999999999986543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.22 Score=39.56 Aligned_cols=99 Identities=11% Similarity=0.088 Sum_probs=62.9
Q ss_pred hcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC-ccc----ccCCC--
Q psy1107 76 QDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE-DDI----LNQVP-- 147 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~----~~~~~-- 147 (218)
...++.+||-+|+|. |..+.++++.. .++|+++|.++..++.++..-. . ..+ |..+ .+. .....
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa----~-~~~--~~~~~~~~~~~i~~~~~~~ 236 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGA----D-VTL--VVDPAKEEESSIIERIRSA 236 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC----S-EEE--ECCTTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCC----C-EEE--cCcccccHHHHHHHHhccc
Confidence 456788999999873 77777777653 3579999999999998876421 1 111 2111 111 00111
Q ss_pred -CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 148 -HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 148 -~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
...+|+|+.. .. ....+..+.+.|+++|.+++...
T Consensus 237 ~g~g~D~vid~-----~g---~~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 237 IGDLPNVTIDC-----SG---NEKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp SSSCCSEEEEC-----SC---CHHHHHHHHHHSCTTCEEEECSC
T ss_pred cCCCCCEEEEC-----CC---CHHHHHHHHHHHhcCCEEEEEec
Confidence 2368999853 21 12356778899999999988653
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.29 E-value=0.26 Score=37.69 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=62.9
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCC------------HHHHHHHHhCCcccCCCceEEeccCCCcccc
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDIS------------PRAVNFFKLNPLYDASKMNVFPCDVTEDDIL 143 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s------------~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 143 (218)
.++++|=.|++.| ..+..+++.+ .+|+.+|.+ ...++.+.......+.++.++.+|+.+..-.
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEG--ADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC--CeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence 4567887777655 2344444444 589999876 5554444433333346788999999875321
Q ss_pred cC-CC-----CCcccEEEechhhcC----CCcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 144 NQ-VP-----HNSVDIATLIFVLSA----IHPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 144 ~~-~~-----~~~~D~i~~~~~l~~----~~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
.. +. -+..|+++.+..+.. .+.+++. .+++.+...++.+|.++...
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 11 00 136899888654332 2233333 23345566667788777654
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.38 Score=36.35 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=63.0
Q ss_pred CCcEEEEecCC--Cc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccC-CC----
Q psy1107 79 GEGVLLEVGCG--VG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQ-VP---- 147 (218)
Q Consensus 79 ~~~~vLDiGcG--~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~-~~---- 147 (218)
.++++|=.|++ +| ..+..+++.+ .+|+.++-+....+.+.+.....+ .++.++.+|+.+.+-... +.
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAG--ARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCC--CEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 45688888876 33 2344555555 588888877654444443322223 378999999988642111 00
Q ss_pred -CCcccEEEechhhcC----------CCcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 148 -HNSVDIATLIFVLSA----------IHPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 -~~~~D~i~~~~~l~~----------~~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
-+.+|+++....+.. .+.+.+. .+++.+...++++|.++...
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 136788887653322 2222322 24455667777888887755
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.17 E-value=0.19 Score=40.26 Aligned_cols=98 Identities=16% Similarity=0.074 Sum_probs=61.9
Q ss_pred hcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+||-+|+|. |..+.++++.. .++|++++.++..++.+++. +.. .++ |..+.+...... ..+|+|
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~l----Ga~-~vi--~~~~~~~~~~~~-~g~Dvv 261 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL----GAD-EVV--NSRNADEMAAHL-KSFDFI 261 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH----TCS-EEE--ETTCHHHHHTTT-TCEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----CCc-EEe--ccccHHHHHHhh-cCCCEE
Confidence 456788999999974 77777877653 35899999999998888763 111 111 221211111222 479999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+..... ...+..+.+.|+++|.++....
T Consensus 262 id~~g~--------~~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 262 LNTVAA--------PHNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp EECCSS--------CCCHHHHHTTEEEEEEEEECCC
T ss_pred EECCCC--------HHHHHHHHHHhccCCEEEEecc
Confidence 853211 1135667789999999887543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.14 E-value=0.31 Score=39.04 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=62.6
Q ss_pred hcCCCcEEEEecCCC-chhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC--ccc---ccCCCC
Q psy1107 76 QDVGEGVLLEVGCGV-GNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE--DDI---LNQVPH 148 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~---~~~~~~ 148 (218)
...++.+||-+|+|. |..+.++++.. .+ +|+++|.++..++.++..-. ..++ |..+ .++ ......
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa-----~~vi--~~~~~~~~~~~~~~~~~~ 259 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVGA-----TECV--NPQDYKKPIQEVLTEMSN 259 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTC-----SEEE--CGGGCSSCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCC-----ceEe--cccccchhHHHHHHHHhC
Confidence 345778999999873 77777777654 34 79999999999998876411 1111 2211 111 011112
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEec
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDY 190 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~ 190 (218)
+.+|+|+.. .. ....+..+.+.|+++ |.+++...
T Consensus 260 ~g~D~vid~-----~g---~~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 260 GGVDFSFEV-----IG---RLDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp SCBSEEEEC-----SC---CHHHHHHHHHHBCTTTCEEEECSC
T ss_pred CCCcEEEEC-----CC---CHHHHHHHHHHhhcCCcEEEEecc
Confidence 368999853 21 124677888999999 99887653
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.27 Score=39.34 Aligned_cols=100 Identities=12% Similarity=0.003 Sum_probs=62.9
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC--cccc---cCCCCC
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE--DDIL---NQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~---~~~~~~ 149 (218)
...++.+||-+|+| .|..+.++++..-..+|+++|.++..++.+++.-. . .++ |..+ .++. .....+
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~-~vi--~~~~~~~~~~~~i~~~t~g 260 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA----T-ECL--NPKDYDKPIYEVICEKTNG 260 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC----S-EEE--CGGGCSSCHHHHHHHHTTS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC----c-EEE--ecccccchHHHHHHHHhCC
Confidence 34677899999987 47777777765321279999999999999876411 1 111 1111 1110 111123
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~ 190 (218)
.+|+|+.. .. ....+..+.+.|+++ |.+++...
T Consensus 261 g~Dvvid~-----~g---~~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 261 GVDYAVEC-----AG---RIETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp CBSEEEEC-----SC---CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCCEEEEC-----CC---CHHHHHHHHHHHhcCCCEEEEEcc
Confidence 79999852 21 124677888999999 99887653
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.25 Score=39.52 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=62.7
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC--cccc---cCCCC
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE--DDIL---NQVPH 148 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~---~~~~~ 148 (218)
...++.+||-+|+| .|..+.++++.. .+ +|+++|.++..++.+++.-. . .+ .|..+ .++. .....
T Consensus 189 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa----~-~v--i~~~~~~~~~~~~~~~~~~ 260 (374)
T 1cdo_A 189 KVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVFGA----T-DF--VNPNDHSEPISQVLSKMTN 260 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTC----C-EE--ECGGGCSSCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhCC----c-eE--EeccccchhHHHHHHHHhC
Confidence 44677899999986 477777777654 34 79999999999998876411 1 11 12211 0110 01111
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEec
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDY 190 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~ 190 (218)
+.+|+|+.. .. ....+..+.+.|+++ |.+++...
T Consensus 261 ~g~D~vid~-----~g---~~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 261 GGVDFSLEC-----VG---NVGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp SCBSEEEEC-----SC---CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCCCEEEEC-----CC---CHHHHHHHHHHhhcCCcEEEEEcC
Confidence 368999852 21 124677888999999 99888653
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.18 Score=40.49 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=63.6
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCC--Cccc---ccCCCCC
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVT--EDDI---LNQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~--~~~~---~~~~~~~ 149 (218)
...++.+||-+|+| .|..+.++++..-..+|+++|.++..++.+++.-. ..+ .|.. ..++ ......+
T Consensus 190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa-----~~v--i~~~~~~~~~~~~i~~~~~g 262 (378)
T 3uko_A 190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGV-----NEF--VNPKDHDKPIQEVIVDLTDG 262 (378)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTC-----CEE--ECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-----cEE--EccccCchhHHHHHHHhcCC
Confidence 45678899999987 47778788765322289999999999999886511 111 1211 1111 0111223
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~ 190 (218)
.+|+|+-. .. -...+..+.+.|++| |.+++...
T Consensus 263 g~D~vid~-----~g---~~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 263 GVDYSFEC-----IG---NVSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp CBSEEEEC-----SC---CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCCEEEEC-----CC---CHHHHHHHHHHhhccCCEEEEEcc
Confidence 79999853 21 124678888999996 99888654
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.075 Score=42.11 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=62.5
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC-cccccCCC-CCcc
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE-DDILNQVP-HNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~-~~~~ 151 (218)
.. ++.+||-+|+| .|..+.++++.. |.++|++++.++..++.+++.-. ..++ |..+ .+....+. ...+
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa-----~~vi--~~~~~~~~~~~~~~g~g~ 239 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGA-----DYVS--EMKDAESLINKLTDGLGA 239 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTC-----SEEE--CHHHHHHHHHHHHTTCCE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCC-----CEEe--ccccchHHHHHhhcCCCc
Confidence 45 78899999997 367777777653 24689999999999888876411 1111 1111 11101111 2268
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+|+.. .. ....+..+.+.|+++|.+++...
T Consensus 240 D~vid~-----~g---~~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 240 SIAIDL-----VG---TEETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp EEEEES-----SC---CHHHHHHHHHHEEEEEEEEECCC
T ss_pred cEEEEC-----CC---ChHHHHHHHHHhhcCCEEEEeCC
Confidence 999853 21 12367788899999999888653
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.7 Score=37.40 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=60.9
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc----ccCCCCCc
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI----LNQVPHNS 150 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~~ 150 (218)
...++.+||=+|+| .|..+.++++..-..+|+++|.++..++.+++.-. ..+ .|..+.++ ........
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa-----~~v--i~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA-----DHV--IDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC-----SEE--ECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-----CEE--EcCCCCCHHHHHHHHhCCCC
Confidence 35678899999986 47777777765422289999999999999876511 111 12222111 11122336
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhc----cCCeEEEEEecC
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIML----KSGGIILFRDYG 191 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~L----k~gG~li~~~~~ 191 (218)
+|+|+-. .. .....+..+.+.| +++|.+++....
T Consensus 283 ~D~vid~-----~g--~~~~~~~~~~~~l~~~~~~~G~iv~~G~~ 320 (404)
T 3ip1_A 283 AKLFLEA-----TG--VPQLVWPQIEEVIWRARGINATVAIVARA 320 (404)
T ss_dssp CSEEEEC-----SS--CHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred CCEEEEC-----CC--CcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence 9999852 21 1222344444455 999999986543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.33 Score=38.88 Aligned_cols=99 Identities=15% Similarity=0.018 Sum_probs=62.8
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC--cccc---cCCCC
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE--DDIL---NQVPH 148 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~---~~~~~ 148 (218)
...++.+||-+|+| .|..+.++++.. .+ +|+++|.++..++.++..-. ..++ |..+ .++. .....
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa-----~~vi--~~~~~~~~~~~~v~~~~~ 263 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKALGA-----TDCL--NPRELDKPVQDVITELTA 263 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTC-----SEEE--CGGGCSSCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCC-----cEEE--ccccccchHHHHHHHHhC
Confidence 34577899999987 477777877654 34 89999999999998876411 1111 2111 1110 01111
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEec
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDY 190 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~ 190 (218)
+.+|+|+.. .. ....+..+.+.|+++ |.+++...
T Consensus 264 ~g~Dvvid~-----~G---~~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 264 GGVDYSLDC-----AG---TAQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp SCBSEEEES-----SC---CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCccEEEEC-----CC---CHHHHHHHHHHhhcCCCEEEEECC
Confidence 368999842 21 124678888999999 99887654
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.36 E-value=0.08 Score=41.16 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=39.0
Q ss_pred CCceEEeccCCCcccccCCCCCcccEEEechhhcCCC-----c-------------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 128 SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIH-----P-------------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 128 ~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~-----~-------------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.++.++++|..+. ...+++++||+|++.-...... + .....++..+.++|+|||.+++..
T Consensus 20 ~~~~i~~gD~~~~--l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 20 GVHRLHVGDAREV--LASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp -CEEEEESCHHHH--HTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCEEEECcHHHH--HhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3567888887662 2345667899999854432110 0 112457788999999999988753
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.31 Score=38.94 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=62.2
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC--cccc---cCCCC
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE--DDIL---NQVPH 148 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~---~~~~~ 148 (218)
...++.+||-+|+| .|..+.++++.. .+ +|+++|.++..++.+++.-. ..++ |..+ .++. .....
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa-----~~vi--~~~~~~~~~~~~v~~~~~ 258 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKEFGA-----TECI--NPQDFSKPIQEVLIEMTD 258 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHHTC-----SEEE--CGGGCSSCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCC-----ceEe--ccccccccHHHHHHHHhC
Confidence 34577899999986 377777777653 24 79999999999888875411 1111 2111 1110 11112
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEec
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDY 190 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~ 190 (218)
+.+|+|+.. .. ....+..+.+.|+++ |.+++...
T Consensus 259 ~g~D~vid~-----~g---~~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 259 GGVDYSFEC-----IG---NVKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp SCBSEEEEC-----SC---CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCCCEEEEC-----CC---cHHHHHHHHHhhccCCcEEEEEec
Confidence 369999853 21 124677888999999 99888653
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.32 Score=38.66 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=58.6
Q ss_pred cEEEEecCC-CchhH-HHHh-hcCCccE-EEEEeCCHH---HHHHHHhCCcccCCCceEEeccCCCccccc--CCCCCcc
Q psy1107 81 GVLLEVGCG-VGNFI-FPLL-SWSKICY-IHACDISPR---AVNFFKLNPLYDASKMNVFPCDVTEDDILN--QVPHNSV 151 (218)
Q Consensus 81 ~~vLDiGcG-~G~~~-~~~~-~~~~~~~-v~~~D~s~~---~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~~~~~ 151 (218)
.+||-+|+| .|..+ .+++ +.. .++ |++++.++. ..+.+++.-. ... |..+.++.. .. .+.+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~lGa------~~v--~~~~~~~~~i~~~-~gg~ 243 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEELDA------TYV--DSRQTPVEDVPDV-YEQM 243 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHTTC------EEE--ETTTSCGGGHHHH-SCCE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHcCC------ccc--CCCccCHHHHHHh-CCCC
Confidence 899999986 46777 7777 653 345 999999888 7888876411 111 222211111 11 2368
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+|+-. .. -...+..+.+.|+++|.+++...
T Consensus 244 Dvvid~-----~g---~~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 244 DFIYEA-----TG---FPKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp EEEEEC-----SC---CHHHHHHHHHHEEEEEEEEECCC
T ss_pred CEEEEC-----CC---ChHHHHHHHHHHhcCCEEEEEeC
Confidence 998842 21 12357788899999999888653
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=92.12 E-value=0.43 Score=34.31 Aligned_cols=98 Identities=14% Similarity=0.050 Sum_probs=60.5
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc----cCCCCC
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~~~ 149 (218)
...++.+||..|+ |.|..+..++... ..+|+++|.++...+.++.. +.. .. .|..+.+.. ......
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~----g~~-~~--~d~~~~~~~~~~~~~~~~~ 106 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRL----GVE-YV--GDSRSVDFADEILELTDGY 106 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTT----CCS-EE--EETTCSTHHHHHHHHTTTC
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----CCC-EE--eeCCcHHHHHHHHHHhCCC
Confidence 3457789999995 4566666665442 25899999999888777653 111 11 233332111 112223
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+|+++... . ...+..+.+.|+++|.+++...
T Consensus 107 ~~D~vi~~~-----g----~~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 107 GVDVVLNSL-----A----GEAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp CEEEEEECC-----C----THHHHHHHHTEEEEEEEEECSC
T ss_pred CCeEEEECC-----c----hHHHHHHHHHhccCCEEEEEcC
Confidence 699998532 1 1356788899999999888653
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.21 Score=37.91 Aligned_cols=79 Identities=11% Similarity=0.062 Sum_probs=53.9
Q ss_pred CCcEEEEecCCCch---hHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC------CCC
Q psy1107 79 GEGVLLEVGCGVGN---FIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV------PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G~---~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~------~~~ 149 (218)
+++++|=-|++.|. .+..+++.+ ++|+.+|.+++.++.+.+.....+.++.++.+|+.+.+-...+ .-+
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~G--a~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 83 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALND--SIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYS 83 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56778888877763 344455555 6899999999888777665555567899999999886421110 015
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
+.|+++.+..
T Consensus 84 ~iDiLVNNAG 93 (254)
T 4fn4_A 84 RIDVLCNNAG 93 (254)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCc
Confidence 7899887553
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=0.33 Score=38.15 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=60.9
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC-cccc---cCCCCC
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE-DDIL---NQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~---~~~~~~ 149 (218)
...++.+||-.|+ |.|..+..++... .++++++|.++..++.++.. +.. ...|..+ .+.. .....+
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~----g~~---~~~d~~~~~~~~~~~~~~~~~ 213 (333)
T 1v3u_A 142 GVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI----GFD---AAFNYKTVNSLEEALKKASPD 213 (333)
T ss_dssp CCCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCSCHHHHHHHHCTT
T ss_pred CCCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc----CCc---EEEecCCHHHHHHHHHHHhCC
Confidence 3457789999998 4566666665543 35899999999888888543 111 1123333 1110 011124
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+|+++.... . ..+..+.+.|+++|.+++..
T Consensus 214 ~~d~vi~~~g-------~--~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 214 GYDCYFDNVG-------G--EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp CEEEEEESSC-------H--HHHHHHHTTEEEEEEEEECC
T ss_pred CCeEEEECCC-------h--HHHHHHHHHHhcCCEEEEEe
Confidence 7999885321 1 24678889999999998754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=92.01 E-value=0.14 Score=40.54 Aligned_cols=100 Identities=17% Similarity=0.158 Sum_probs=61.9
Q ss_pred hcCCCcEEEEecCC--CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc---ccCCCC-C
Q psy1107 76 QDVGEGVLLEVGCG--VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI---LNQVPH-N 149 (218)
Q Consensus 76 ~~~~~~~vLDiGcG--~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~-~ 149 (218)
...++.+||-.|+| .|..+..++.....++++++|.++..++.++.. +.. .+ .|..+.+. ...... +
T Consensus 167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~----g~~-~~--~~~~~~~~~~~~~~~~~~~ 239 (347)
T 1jvb_A 167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD-YV--INASMQDPLAEIRRITESK 239 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS-EE--EETTTSCHHHHHHHHTTTS
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCC-EE--ecCCCccHHHHHHHHhcCC
Confidence 45678899999997 455666666543135899999999888888653 111 11 12222111 011111 4
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+|+++... . ....+..+.+.|+++|.+++...
T Consensus 240 ~~d~vi~~~-----g---~~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 240 GVDAVIDLN-----N---SEKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp CEEEEEESC-----C---CHHHHTTGGGGEEEEEEEEECCS
T ss_pred CceEEEECC-----C---CHHHHHHHHHHHhcCCEEEEECC
Confidence 799988532 1 12467778899999999888553
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=92.00 E-value=0.42 Score=37.69 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=63.1
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC---CCCCcc
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ---VPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~---~~~~~~ 151 (218)
...++.+||-+|+| .|..+..++... .+++++++.++..++.++..-. . .+ .|..+.++... .. +.+
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa----~-~~--~d~~~~~~~~~~~~~~-~~~ 231 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGA----D-LV--VNPLKEDAAKFMKEKV-GGV 231 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTC----S-EE--ECTTTSCHHHHHHHHH-SSE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHCCC----C-EE--ecCCCccHHHHHHHHh-CCC
Confidence 35677899999985 567777776653 3599999999999988876411 1 11 23322211100 01 368
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|+|+.. .. ....+..+.+.|+++|.+++....
T Consensus 232 d~vid~-----~g---~~~~~~~~~~~l~~~G~~v~~g~~ 263 (339)
T 1rjw_A 232 HAAVVT-----AV---SKPAFQSAYNSIRRGGACVLVGLP 263 (339)
T ss_dssp EEEEES-----SC---CHHHHHHHHHHEEEEEEEEECCCC
T ss_pred CEEEEC-----CC---CHHHHHHHHHHhhcCCEEEEeccc
Confidence 988853 21 124667888999999998886543
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.90 E-value=0.25 Score=39.73 Aligned_cols=100 Identities=12% Similarity=0.060 Sum_probs=62.9
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCC---Ccc----cccCCCC
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVT---EDD----ILNQVPH 148 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~---~~~----~~~~~~~ 148 (218)
..++.+||-+|+| .|..+.++++..-..+|++++.++..++.++..-. -.++ |.. +.+ +......
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa-----~~vi--~~~~~~~~~~~~~v~~~~~g 265 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA-----DLTL--NRRETSVEERRKAIMDITHG 265 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC-----SEEE--ETTTSCHHHHHHHHHHHTTT
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC-----cEEE--eccccCcchHHHHHHHHhCC
Confidence 4567899999976 57777787766421499999999999999886411 1121 111 111 1111122
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
..+|+|+... . ....+..+.+.|+++|.+++....
T Consensus 266 ~g~Dvvid~~-----g---~~~~~~~~~~~l~~~G~iv~~G~~ 300 (380)
T 1vj0_A 266 RGADFILEAT-----G---DSRALLEGSELLRRGGFYSVAGVA 300 (380)
T ss_dssp SCEEEEEECS-----S---CTTHHHHHHHHEEEEEEEEECCCC
T ss_pred CCCcEEEECC-----C---CHHHHHHHHHHHhcCCEEEEEecC
Confidence 3699998532 1 113567788999999999886543
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.65 Score=36.54 Aligned_cols=102 Identities=13% Similarity=0.046 Sum_probs=62.7
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc---cC-CCCC
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL---NQ-VPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~-~~~~ 149 (218)
....++.+||=.|+| .|..+.++++..-...++++|.++..++.+++.-. .+.+ |..+.+.. .. ....
T Consensus 156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa-----~~~i--~~~~~~~~~~~~~~~~~~ 228 (346)
T 4a2c_A 156 AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGA-----MQTF--NSSEMSAPQMQSVLRELR 228 (346)
T ss_dssp TTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-----SEEE--ETTTSCHHHHHHHHGGGC
T ss_pred hccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCC-----eEEE--eCCCCCHHHHHHhhcccC
Confidence 445678899999987 45666667665433467899999999999987621 1111 11111100 00 1123
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+|+|+.. . .....++.+.++|+++|.+++....
T Consensus 229 g~d~v~d~-----~---G~~~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 229 FNQLILET-----A---GVPQTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp SSEEEEEC-----S---CSHHHHHHHHHHCCTTCEEEECCCC
T ss_pred Cccccccc-----c---cccchhhhhhheecCCeEEEEEecc
Confidence 56777642 2 1235677888999999999886543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=0.29 Score=38.49 Aligned_cols=99 Identities=10% Similarity=0.105 Sum_probs=63.3
Q ss_pred hhcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHH-HhCCcccCCCceEEeccCCCccccc---CCCC
Q psy1107 75 NQDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFF-KLNPLYDASKMNVFPCDVTEDDILN---QVPH 148 (218)
Q Consensus 75 ~~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~---~~~~ 148 (218)
....++.+||-.|+ |.|..+..++... .++|++++.++..++.+ +.. . .. .. .|..+.+... ....
T Consensus 145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~-g---~~-~~--~~~~~~~~~~~~~~~~~ 216 (336)
T 4b7c_A 145 GQPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEEL-G---FD-GA--IDYKNEDLAAGLKRECP 216 (336)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTT-C---CS-EE--EETTTSCHHHHHHHHCT
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc-C---CC-EE--EECCCHHHHHHHHHhcC
Confidence 34567889999998 4677777777653 35999999999998888 443 1 11 11 1222221110 1112
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+.+|+++.. .. ...+..+.+.|+++|.+++...
T Consensus 217 ~~~d~vi~~-----~g----~~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 217 KGIDVFFDN-----VG----GEILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp TCEEEEEES-----SC----HHHHHHHHTTEEEEEEEEECCC
T ss_pred CCceEEEEC-----CC----cchHHHHHHHHhhCCEEEEEee
Confidence 469998853 21 1367888899999999988653
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=91.62 E-value=0.4 Score=37.90 Aligned_cols=94 Identities=15% Similarity=0.107 Sum_probs=59.6
Q ss_pred CCcEEEEe-cCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc--cccCCCCCcccEE
Q psy1107 79 GEGVLLEV-GCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD--ILNQVPHNSVDIA 154 (218)
Q Consensus 79 ~~~~vLDi-GcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~~~D~i 154 (218)
++.+||=. |+| .|..+.++++.. .++|++++.++..++.+++.-. . .++ |..+.. .........+|+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa----~-~vi--~~~~~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKMGA----D-IVL--NHKESLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHHTC----S-EEE--CTTSCHHHHHHHHTCCCEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCC----c-EEE--ECCccHHHHHHHhCCCCccEE
Confidence 67889988 454 677777777653 3599999999999988886411 1 111 111110 0011123469998
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+.. . .-...+..+.+.|+++|.++..
T Consensus 222 ~d~-----~---g~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 222 FCT-----F---NTDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EES-----S---CHHHHHHHHHHHEEEEEEEEES
T ss_pred EEC-----C---CchHHHHHHHHHhccCCEEEEE
Confidence 852 2 2335678888999999998764
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=91.36 E-value=0.33 Score=36.66 Aligned_cols=109 Identities=7% Similarity=0.015 Sum_probs=59.9
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEE-eCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----C
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHAC-DISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----H 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~-D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~ 148 (218)
.++++|=.|++.| ..+..+++.+ .+|+.+ +.+....+.+.......+.++.++.+|+.+.+-... +. -
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEG--ANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF 84 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4567888887665 2344444444 477777 555555444433333334678899999987532111 10 1
Q ss_pred CcccEEEechhhc-------CCCcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLS-------AIHPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~-------~~~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
+..|+++.+.... ..+++++. .+.+.+...++++|.++...
T Consensus 85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 3689888765322 12222322 23344556666677777654
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=91.21 E-value=0.42 Score=37.04 Aligned_cols=80 Identities=13% Similarity=0.045 Sum_probs=51.3
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC-C-----CC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV-P-----HN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~-----~~ 149 (218)
.++++|=.|++.| .++..+++.+ .+|++++.++..++.+.......+.++.++.+|+.+.+-...+ . .+
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 107 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRG--ARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLG 107 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 4568888887755 3344444444 5899999998877766554433456789999999885321111 0 13
Q ss_pred cccEEEechhh
Q psy1107 150 SVDIATLIFVL 160 (218)
Q Consensus 150 ~~D~i~~~~~l 160 (218)
..|+++.+..+
T Consensus 108 ~id~lvnnAg~ 118 (301)
T 3tjr_A 108 GVDVVFSNAGI 118 (301)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 68998886543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=91.04 E-value=0.55 Score=37.40 Aligned_cols=102 Identities=9% Similarity=-0.092 Sum_probs=63.5
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc--ccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED--DILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~~ 151 (218)
....++.+||-+|+| .|..+.++++.. .+++++++.++..++.++..- . ..++..+-.+. .+........+
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lG----a-~~vi~~~~~~~~~~v~~~~~g~g~ 258 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFALG----A-DHGINRLEEDWVERVYALTGDRGA 258 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHT----C-SEEEETTTSCHHHHHHHHHTTCCE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHcC----C-CEEEcCCcccHHHHHHHHhCCCCc
Confidence 345678899999987 377777777654 359999999999988887641 1 11221110000 00011122369
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|+|+.... . ..+..+.+.|+++|.+++....
T Consensus 259 D~vid~~g----~-----~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 259 DHILEIAG----G-----AGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp EEEEEETT----S-----SCHHHHHHHEEEEEEEEEECCC
T ss_pred eEEEECCC----h-----HHHHHHHHHhhcCCEEEEEecC
Confidence 99986422 1 2456678899999999987543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.04 E-value=1.9 Score=30.44 Aligned_cols=99 Identities=16% Similarity=0.104 Sum_probs=55.9
Q ss_pred CcEEEEecCCC-chhH-HHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC-CCCcccEEE
Q psy1107 80 EGVLLEVGCGV-GNFI-FPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV-PHNSVDIAT 155 (218)
Q Consensus 80 ~~~vLDiGcG~-G~~~-~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~~~D~i~ 155 (218)
+.+|+=+|+|. |... ..+... + ..|+++|.++..++.++.. .+.++.+|..+....... .-..+|+|+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g--~~V~vid~~~~~~~~~~~~------g~~~~~gd~~~~~~l~~~~~~~~ad~vi 110 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYG--KISLGIEIREEAAQQHRSE------GRNVISGDATDPDFWERILDTGHVKLVL 110 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHC--SCEEEEESCHHHHHHHHHT------TCCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccC--CeEEEEECCHHHHHHHHHC------CCCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence 45788888862 3332 222333 3 4899999999888777643 244566676654322222 223689888
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+. .+.......+-.+.+.+.|++.+++....
T Consensus 111 ~~-----~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 141 (183)
T 3c85_A 111 LA-----MPHHQGNQTALEQLQRRNYKGQIAAIAEY 141 (183)
T ss_dssp EC-----CSSHHHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred Ee-----CCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 63 22122222333345556777777776533
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.02 E-value=0.7 Score=33.82 Aligned_cols=97 Identities=9% Similarity=0.070 Sum_probs=57.4
Q ss_pred EEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 82 VLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
+|+=+|+ |..+..++... .+..++++|.++..++..... ....++.+|..+........-...|+|++.
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~-- 72 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-----LKATIIHGDGSHKEILRDAEVSKNDVVVIL-- 72 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-----SSSEEEESCTTSHHHHHHHTCCTTCEEEEC--
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-----cCCeEEEcCCCCHHHHHhcCcccCCEEEEe--
Confidence 4566665 55555555431 235899999999988765432 135678888877543322222367888863
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+.+.....+..+.+.+.+...++....
T Consensus 73 ---~~~d~~n~~~~~~a~~~~~~~~iia~~~ 100 (218)
T 3l4b_C 73 ---TPRDEVNLFIAQLVMKDFGVKRVVSLVN 100 (218)
T ss_dssp ---CSCHHHHHHHHHHHHHTSCCCEEEECCC
T ss_pred ---cCCcHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 2323344455555565667777766543
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=3.3 Score=32.26 Aligned_cols=92 Identities=20% Similarity=0.182 Sum_probs=56.5
Q ss_pred CcEEEEecCCC-c-hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGV-G-NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~-G-~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
..+|.=||+|. | .++..++..+...+|+++|.++..++.+.+.-. +.-...|..+. . -...|+|+.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~-----~~~~~~~~~~~----~--~~~aDvVil- 100 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-----IDEGTTSIAKV----E--DFSPDFVML- 100 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-----CSEEESCTTGG----G--GGCCSEEEE-
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC-----cchhcCCHHHH----h--hccCCEEEE-
Confidence 36899999873 3 334445554533389999999998888775411 10111111110 0 124788886
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
.+|+.....++..+...++++.+++-
T Consensus 101 ----avp~~~~~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 101 ----SSPVRTFREIAKKLSYILSEDATVTD 126 (314)
T ss_dssp ----CSCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred ----eCCHHHHHHHHHHHhhccCCCcEEEE
Confidence 35656677888899999999875543
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=0.62 Score=36.72 Aligned_cols=105 Identities=14% Similarity=-0.009 Sum_probs=61.5
Q ss_pred hhcCCCcEEEEecCCCc-hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVG-NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G-~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+||=+|+|.+ ..+..++...-..+|+++|.++..++.++..-... -+.....|+.+ .+........+|.
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~--~i~~~~~~~~~-~v~~~t~g~g~d~ 235 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADV--TINSGDVNPVD-EIKKITGGLGVQS 235 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSE--EEEC-CCCHHH-HHHHHTTSSCEEE
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeE--EEeCCCCCHHH-HhhhhcCCCCceE
Confidence 34567889999999854 55555555433469999999999998888762210 01111111111 0111122224666
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
++... .-...+....+.|+++|.+++...
T Consensus 236 ~~~~~--------~~~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 236 AIVCA--------VARIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp EEECC--------SCHHHHHHHHHTEEEEEEEEECCC
T ss_pred EEEec--------cCcchhheeheeecCCceEEEEec
Confidence 65421 123467788899999999888653
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.75 E-value=0.61 Score=35.77 Aligned_cols=106 Identities=8% Similarity=0.078 Sum_probs=65.4
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC------CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV------PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~------~~~ 149 (218)
+++++|=-|++.| ..+..+++.+ ++|+.+|.+.+.++.+.+. .+.+..++.+|+.+.+-...+ .-+
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~G--a~V~i~~r~~~~l~~~~~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 102 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEG--ARVFITGRRKDVLDAAIAE---IGGGAVGIQADSANLAELDRLYEKVKAEAG 102 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---HCTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---cCCCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5778888888776 3344455555 6899999999887766543 345788889999886321110 115
Q ss_pred cccEEEechhhc------CCCcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLS------AIHPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~------~~~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.|+++.+.... .+++++++ .+.+.+.+.++.+|.++...
T Consensus 103 ~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 103 RIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp CEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred CCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 789888755322 22334444 23344566777777766543
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=90.67 E-value=0.79 Score=35.36 Aligned_cols=79 Identities=18% Similarity=0.108 Sum_probs=47.7
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCC------------HHHHHHHHhCCcccCCCceEEeccCCCcccc
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDIS------------PRAVNFFKLNPLYDASKMNVFPCDVTEDDIL 143 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s------------~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 143 (218)
.++++|=.|++.| ..+..+++.+ .+|+++|.+ ...++.+.......+.++.++.+|+.+.+-.
T Consensus 27 ~gk~~lVTGas~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 104 (299)
T 3t7c_A 27 EGKVAFITGAARGQGRSHAITLAREG--ADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAM 104 (299)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 4668888887765 2344444444 589998876 4444444333333346789999999875321
Q ss_pred cC-CC-----CCcccEEEechh
Q psy1107 144 NQ-VP-----HNSVDIATLIFV 159 (218)
Q Consensus 144 ~~-~~-----~~~~D~i~~~~~ 159 (218)
.. +. -+..|+++.+..
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg 126 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAA 126 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 11 00 136898887654
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=90.26 E-value=0.96 Score=34.82 Aligned_cols=108 Identities=13% Similarity=0.054 Sum_probs=62.3
Q ss_pred CCcEEEEecCCCc-----hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC------C
Q psy1107 79 GEGVLLEVGCGVG-----NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV------P 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G-----~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~------~ 147 (218)
.++++|=.|++.| ..+..+++.+ .+|+.++.++...+.+....... .++.++.+|+.+.+-...+ .
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAG--AELAFTYQGDALKKRVEPLAEEL-GAFVAGHCDVADAASIDAVFETLEKK 106 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTT--CEEEEEECSHHHHHHHHHHHHHH-TCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHhc-CCceEEECCCCCHHHHHHHHHHHHHh
Confidence 4678888887633 2344455555 58989988865444443332222 3578889999885321110 0
Q ss_pred CCcccEEEechhhc----------CCCcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 148 HNSVDIATLIFVLS----------AIHPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 ~~~~D~i~~~~~l~----------~~~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
-+..|+++.+..+. ..+++++. .+++.+...++.+|.++...
T Consensus 107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 14689998865432 12223332 33445566777788887755
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=90.24 E-value=0.76 Score=35.33 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=60.7
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHH-HHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----C
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPR-AVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----H 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~-~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~ 148 (218)
.++++|=.|++.| ..+..+++.+ .+|+.++.+.. ..+.+.......+.++.++.+|+.+..-... +. -
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEG--ANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL 123 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4567888887655 2344444444 58888887654 2333332222334678899999987532111 00 1
Q ss_pred CcccEEEechhhcC-------CCcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSA-------IHPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~-------~~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
+..|+++.+..... .+.+++. .+++.+...++.+|.++...
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 36898887643221 1223333 34445566777888777654
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=90.06 E-value=0.87 Score=36.25 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=62.8
Q ss_pred hcCCCcEEEEec--CCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc---cCCCCCc
Q psy1107 76 QDVGEGVLLEVG--CGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL---NQVPHNS 150 (218)
Q Consensus 76 ~~~~~~~vLDiG--cG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~~~~ 150 (218)
...++.+||-.| .|.|..+..++... .++|++++.++..++.++..- .. .++ |..+.++. .......
T Consensus 160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~G----a~-~~~--~~~~~~~~~~~~~~~~~g 231 (362)
T 2c0c_A 160 GLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLG----CD-RPI--NYKTEPVGTVLKQEYPEG 231 (362)
T ss_dssp CCCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTT----CS-EEE--ETTTSCHHHHHHHHCTTC
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHcC----Cc-EEE--ecCChhHHHHHHHhcCCC
Confidence 456788999999 35778888887654 358999999998888887641 11 111 21111110 0111236
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|+|+.. .. . ..+..+.+.|+++|.+++...
T Consensus 232 ~D~vid~-----~g--~--~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 232 VDVVYES-----VG--G--AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp EEEEEEC-----SC--T--HHHHHHHHHEEEEEEEEECCC
T ss_pred CCEEEEC-----CC--H--HHHHHHHHHHhcCCEEEEEeC
Confidence 8999853 21 1 467788899999999888653
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.06 E-value=0.44 Score=36.53 Aligned_cols=79 Identities=9% Similarity=0.025 Sum_probs=49.8
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC-C-----CC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV-P-----HN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~-----~~ 149 (218)
.++++|=.|++.| ..+..+++.+ .+|++++.++..++.+.......+.++.++.+|+.+.+-...+ . -+
T Consensus 7 ~gk~vlVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 84 (280)
T 3tox_A 7 EGKIAIVTGASSGIGRAAALLFAREG--AKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFG 84 (280)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT--CEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3567777777655 2344444444 5899999998877666554444456788999999875321111 0 13
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
..|+++.+..
T Consensus 85 ~iD~lvnnAg 94 (280)
T 3tox_A 85 GLDTAFNNAG 94 (280)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6898887654
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=90.04 E-value=0.5 Score=37.22 Aligned_cols=99 Identities=17% Similarity=0.104 Sum_probs=61.1
Q ss_pred hhcCCCcEEEEecCC--CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc----cCCCC
Q psy1107 75 NQDVGEGVLLEVGCG--VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPH 148 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG--~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~~ 148 (218)
....++.+||-.|+| .|..+..++... .+++++++.++..++.+++. +.. ..+ |..+.+.. .....
T Consensus 140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l----ga~-~~~--~~~~~~~~~~~~~~~~~ 211 (340)
T 3gms_A 140 LNLQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRL----GAA-YVI--DTSTAPLYETVMELTNG 211 (340)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH----TCS-EEE--ETTTSCHHHHHHHHTTT
T ss_pred cccCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhC----CCc-EEE--eCCcccHHHHHHHHhCC
Confidence 345678899999987 567777777653 35999999999888888764 111 111 22221111 11223
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
..+|+++.. .. .. ......+.|+++|.+++...
T Consensus 212 ~g~Dvvid~-----~g---~~-~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 212 IGADAAIDS-----IG---GP-DGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp SCEEEEEES-----SC---HH-HHHHHHHTEEEEEEEEECCC
T ss_pred CCCcEEEEC-----CC---Ch-hHHHHHHHhcCCCEEEEEee
Confidence 379999853 21 11 12334589999999988654
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=90.00 E-value=0.84 Score=34.58 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=61.0
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCC-HHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----C
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDIS-PRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----H 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~ 148 (218)
.++++|=.|++.| ..+..+++.+ .+|+.++.. ....+.........+.++.++.+|+.+..-... +. -
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRLG--AKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF 94 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4567887777655 2344444444 578877653 444443333333335678899999988532111 00 1
Q ss_pred CcccEEEechhhcCC------CcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSAI------HPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~------~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
+..|+++.+..+... +++++. .+.+.+.+.++++|.+++..
T Consensus 95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 152 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTS 152 (270)
T ss_dssp SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 367988876543322 223333 33455667777788777754
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=89.99 E-value=0.23 Score=37.76 Aligned_cols=79 Identities=15% Similarity=0.012 Sum_probs=52.0
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC------CCCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ------VPHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~------~~~~ 149 (218)
+++++|=-|++.| ..+..+++.+ ++|+..|.+++.++.+.+.....+.++.++.+|+.+.+-... -.-+
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~G--a~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAG--ARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 5667777777665 2344444545 699999999988776655544445688899999988632110 1125
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
+.|+++.+..
T Consensus 86 ~iDiLVNNAG 95 (255)
T 4g81_D 86 HVDILINNAG 95 (255)
T ss_dssp CCCEEEECCC
T ss_pred CCcEEEECCC
Confidence 7899988553
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=89.91 E-value=0.62 Score=35.89 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=60.7
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCC--HHHHHHHHhCCcccCCCceEEeccCCCcccccCC-C-----
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDIS--PRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV-P----- 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s--~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~----- 147 (218)
.++++|=.|++.| ..+..+++.+ .+|+.++.+ ....+.........+.++.++.+|+.+.+-...+ .
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREG--ADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREA 125 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4567888887655 2334444444 578888775 2333333332233346788899999875321110 0
Q ss_pred CCcccEEEechhhcC-------CCcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 148 HNSVDIATLIFVLSA-------IHPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~-------~~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
-+..|+++.+..... .+++++. .+++.+...++.+|.++...
T Consensus 126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS 185 (294)
T ss_dssp HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 136898887654322 1223333 33445566777788877754
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=89.82 E-value=0.55 Score=35.42 Aligned_cols=79 Identities=11% Similarity=0.127 Sum_probs=49.4
Q ss_pred CCcEEEEecCCCchhHHHH----hhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----C
Q psy1107 79 GEGVLLEVGCGVGNFIFPL----LSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----H 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~----~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~ 148 (218)
.+.++|=.|++.| ++..+ ++.+ .+|+.++-++..++.........+.++.++.+|+.+.+-... +. .
T Consensus 28 ~~k~vlITGas~g-IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 104 (262)
T 3rkr_A 28 SGQVAVVTGASRG-IGAAIARKLGSLG--ARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAH 104 (262)
T ss_dssp TTCEEEESSTTSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 4567887776544 44444 4444 589999999887766655444345678899999987532111 00 1
Q ss_pred CcccEEEechhh
Q psy1107 149 NSVDIATLIFVL 160 (218)
Q Consensus 149 ~~~D~i~~~~~l 160 (218)
+..|+++.+..+
T Consensus 105 g~id~lv~~Ag~ 116 (262)
T 3rkr_A 105 GRCDVLVNNAGV 116 (262)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 368988876543
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=89.79 E-value=0.79 Score=35.00 Aligned_cols=79 Identities=19% Similarity=0.098 Sum_probs=47.9
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCC----------------HHHHHHHHhCCcccCCCceEEeccCCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDIS----------------PRAVNFFKLNPLYDASKMNVFPCDVTE 139 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s----------------~~~~~~~~~~~~~~~~~i~~~~~d~~~ 139 (218)
.++++|=.|++.| ..+..+++.+ .+|+++|.+ ...++.........+.++.++.+|+.+
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 87 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEG--ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD 87 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence 4568888887765 2344444444 589998876 444444443333334678899999987
Q ss_pred cccccCC-C-----CCcccEEEechh
Q psy1107 140 DDILNQV-P-----HNSVDIATLIFV 159 (218)
Q Consensus 140 ~~~~~~~-~-----~~~~D~i~~~~~ 159 (218)
.+-...+ . -+..|+++.+..
T Consensus 88 ~~~v~~~~~~~~~~~g~id~lv~nAg 113 (286)
T 3uve_A 88 YDALKAAVDSGVEQLGRLDIIVANAG 113 (286)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 5321111 0 136899888654
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=89.60 E-value=1.1 Score=34.99 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=60.1
Q ss_pred EEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 82 VLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 82 ~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
+||=.|+ |.|..+.++++.. .++|++++.++...+.+++. +.. .++ |..+......+..+.+|+++-
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~l----Ga~-~vi--~~~~~~~~~~~~~~~~d~v~d--- 217 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSL----GAN-RIL--SRDEFAESRPLEKQLWAGAID--- 217 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHH----TCS-EEE--EGGGSSCCCSSCCCCEEEEEE---
T ss_pred eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----CCC-EEE--ecCCHHHHHhhcCCCccEEEE---
Confidence 4888887 4778888888764 35999999999999988764 111 111 111111112233357898874
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
... . ..+..+.+.|+++|.+++...
T Consensus 218 --~~g--~--~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 218 --TVG--D--KVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp --SSC--H--HHHHHHHHTEEEEEEEEECCC
T ss_pred --CCC--c--HHHHHHHHHHhcCCEEEEEec
Confidence 232 1 277888999999999988653
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=89.55 E-value=0.36 Score=38.13 Aligned_cols=95 Identities=18% Similarity=0.201 Sum_probs=59.6
Q ss_pred CCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC---CCCCcccE
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ---VPHNSVDI 153 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~---~~~~~~D~ 153 (218)
++.+||-+|+| .|..+.++++.. .+ +|++++.++..++.++.. .. .+ .|..+.++... .....+|+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a~-----~v--~~~~~~~~~~~~~~~~~~g~D~ 234 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-AD-----RL--VNPLEEDLLEVVRRVTGSGVEV 234 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-CS-----EE--ECTTTSCHHHHHHHHHSSCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-HH-----hc--cCcCccCHHHHHHHhcCCCCCE
Confidence 77899999986 467777777653 35 899999999887777653 21 11 12222111000 01236899
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+.. .. ....+..+.+.|+++|.+++...
T Consensus 235 vid~-----~g---~~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 235 LLEF-----SG---NEAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp EEEC-----SC---CHHHHHHHHHHEEEEEEEEECCC
T ss_pred EEEC-----CC---CHHHHHHHHHHHhcCCEEEEEec
Confidence 9853 21 12456788899999999888653
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.43 E-value=0.35 Score=38.05 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=39.3
Q ss_pred CCceEEeccCCCcccccCCCCCcccEEEechhhcCCC------------cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 128 SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIH------------PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 128 ~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~------------~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
....++++|..+. ...++++++|+|++.-...... .......+..+.++|+|||.+++..
T Consensus 13 ~~~~ii~gD~~~~--l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~ 84 (323)
T 1boo_A 13 SNGSMYIGDSLEL--LESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 84 (323)
T ss_dssp SSEEEEESCHHHH--GGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEeCcHHHH--HhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence 3566777776542 1235567899999853322110 0135678888999999999998854
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.31 E-value=0.67 Score=34.91 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=61.9
Q ss_pred cCCCcEEEEecCC-CchhHHHH----hhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C----
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPL----LSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V---- 146 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~----~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~---- 146 (218)
..++++||=.|++ +|.++..+ ++.+ .+|+.++.+....+.+....... ..+.++.+|+.+.+-... +
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~ 87 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREG--AELAFTYVGDRFKDRITEFAAEF-GSELVFPCDVADDAQIDALFASLK 87 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHHHHT-TCCCEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcC--CCEEEEecchhhHHHHHHHHHHc-CCcEEEECCCCCHHHHHHHHHHHH
Confidence 3457788988875 24444444 4444 58999987755444443332222 357889999988532111 0
Q ss_pred -CCCcccEEEechhhcC-----------CCcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 147 -PHNSVDIATLIFVLSA-----------IHPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 147 -~~~~~D~i~~~~~l~~-----------~~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
.-+..|+++.+..+.. .+++++. .+++.+...++++|.++...
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 0136899988654322 3333333 23344556666678777654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=89.27 E-value=0.71 Score=34.70 Aligned_cols=110 Identities=10% Similarity=-0.015 Sum_probs=59.7
Q ss_pred CCcEEEEecCCCchhHHHHhhcC---CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----CC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS---KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----HN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~---~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~~ 149 (218)
++.+||=.| |+|.++..++... ...+|++++-+....+.+.......+.++.++.+|+.+..-... +. .+
T Consensus 3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (276)
T 1wma_A 3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 81 (276)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 345677665 4555555554331 23589999988766554433322224578899999987532111 10 13
Q ss_pred cccEEEechhhcCCC------cchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIH------PNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~------~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+|+++......... ++++. .+++.+.+.++++|.+++..
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 689888755332111 12222 23444556666677777654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=89.26 E-value=0.64 Score=34.97 Aligned_cols=106 Identities=11% Similarity=0.206 Sum_probs=62.6
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC------CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV------PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~------~~~ 149 (218)
.++++|=.|++.| ..+..+++.+ .+|+.++.++..++...... +.++.++.+|+.+.+-...+ .-+
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGG--AEVLLTGRNESNIARIREEF---GPRVHALRSDIADLNEIAVLGAAAGQTLG 81 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4567888877655 2344444444 58999999987766655432 34688899999875321110 013
Q ss_pred cccEEEechhhcC------CCcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSA------IHPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~------~~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
..|+++.+..+.. .+++++. .+.+.+...++++|.++...
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 82 AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 6898887653322 2223333 23344556667788777654
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=89.25 E-value=2.3 Score=29.01 Aligned_cols=103 Identities=7% Similarity=-0.001 Sum_probs=57.3
Q ss_pred cEEEEecCCCchhHHHHhhcC--CccEEEEEeCC-HHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWS--KICYIHACDIS-PRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.+|+=+|+ |..+..++... ....|+++|.+ +...+..... ....+.++.+|..+........-...|+|++.
T Consensus 4 ~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~---~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (153)
T 1id1_A 4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQR---LGDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHH---HCTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred CcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHh---hcCCCeEEEcCCCCHHHHHHcChhhCCEEEEe
Confidence 46777776 44554444321 12589999997 4433333321 11347788888877543322222367888863
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
.+.+.....+....+.+.|...++.......
T Consensus 79 -----~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~ 109 (153)
T 1id1_A 79 -----SDNDADNAFVVLSAKDMSSDVKTVLAVSDSK 109 (153)
T ss_dssp -----SSCHHHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred -----cCChHHHHHHHHHHHHHCCCCEEEEEECCHH
Confidence 2223344555556666777777777554433
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=89.20 E-value=1 Score=35.30 Aligned_cols=98 Identities=17% Similarity=0.122 Sum_probs=62.7
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc----cCCCCC
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~~~ 149 (218)
...++.+||-.|+ |.|..+..+++.. .+++++++.++..++.+++.-. . .. .|..+.+.. ......
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga----~-~~--~~~~~~~~~~~~~~~~~~~ 216 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEYGA----E-YL--INASKEDILRQVLKFTNGK 216 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC----S-EE--EETTTSCHHHHHHHHTTTS
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC----c-EE--EeCCCchHHHHHHHHhCCC
Confidence 4567889999994 4677777777653 3599999999999988876421 1 11 122221111 111233
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+|+|+.... . ..+..+.+.|+++|.+++...
T Consensus 217 g~D~vid~~g-------~--~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 217 GVDASFDSVG-------K--DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp CEEEEEECCG-------G--GGHHHHHHHEEEEEEEEECCC
T ss_pred CceEEEECCC-------h--HHHHHHHHHhccCCEEEEEcC
Confidence 6999985321 1 356778889999999988653
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=89.09 E-value=0.37 Score=37.53 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=58.8
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+||=.|+| .|..+.++++.. .+++++++ ++...+.+++.-. ..++. | . ..+ ...+|+
T Consensus 138 ~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~lGa-----~~v~~-d--~----~~v-~~g~Dv 202 (315)
T 3goh_A 138 IPLTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKRGV-----RHLYR-E--P----SQV-TQKYFA 202 (315)
T ss_dssp SCCCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHHTE-----EEEES-S--G----GGC-CSCEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHcCC-----CEEEc-C--H----HHh-CCCccE
Confidence 344678899999996 577888887764 35999999 8888888876411 11221 3 1 222 457999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+-. .. . ..+..+.+.|+++|.+++..
T Consensus 203 v~d~-----~g--~--~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 203 IFDA-----VN--S--QNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp EECC----------------TTGGGEEEEEEEEEEC
T ss_pred EEEC-----CC--c--hhHHHHHHHhcCCCEEEEEe
Confidence 9842 21 1 12256788999999998864
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=88.97 E-value=0.89 Score=34.53 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=48.7
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCC------------HHHHHHHHhCCcccCCCceEEeccCCCcccc
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDIS------------PRAVNFFKLNPLYDASKMNVFPCDVTEDDIL 143 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s------------~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 143 (218)
.++++|=.|++.| ..+..+++.+ .+|+++|.+ ...++.........+.++.++.+|+.+.+-.
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAADG--ADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL 89 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 4567888877655 3344444444 589999876 5554444433333346789999999875321
Q ss_pred cC-CC-----CCcccEEEechhhc
Q psy1107 144 NQ-VP-----HNSVDIATLIFVLS 161 (218)
Q Consensus 144 ~~-~~-----~~~~D~i~~~~~l~ 161 (218)
.. +. -+..|+++.+..+.
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~ 113 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIA 113 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCC
Confidence 11 10 13689998866544
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.61 E-value=1.1 Score=34.11 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=48.6
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeC-------------CHHHHHHHHhCCcccCCCceEEeccCCCccc
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDI-------------SPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~-------------s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 142 (218)
.++++|=.|++.| ..+..+++.+ .+|+++|. +...++.+.......+.++.++.+|+.+.+-
T Consensus 14 ~gk~~lVTGas~gIG~a~a~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 14 QGRVAFITGAARGQGRSHAVRLAAEG--ADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA 91 (280)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 4567888877665 2344444444 58999887 5555555544433345678899999987532
Q ss_pred ccCC-C-----CCcccEEEechhh
Q psy1107 143 LNQV-P-----HNSVDIATLIFVL 160 (218)
Q Consensus 143 ~~~~-~-----~~~~D~i~~~~~l 160 (218)
...+ . -+..|+++.+...
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~ 115 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGV 115 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 1111 0 1368988886543
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=88.55 E-value=0.9 Score=35.75 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=61.9
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc-ccc---cCCCCC
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED-DIL---NQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~---~~~~~~ 149 (218)
...++.+||-.|+ |.|..+..++... .+++++++.++..++.+++... .. .. .|..+. ++. .....+
T Consensus 152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~g---~~-~~--~d~~~~~~~~~~~~~~~~~ 224 (345)
T 2j3h_A 152 SPKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKFG---FD-DA--FNYKEESDLTAALKRCFPN 224 (345)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTSC---CS-EE--EETTSCSCSHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcC---Cc-eE--EecCCHHHHHHHHHHHhCC
Confidence 3457789999997 4677777776653 3589999999998888873321 11 11 132221 110 011124
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+|+++.. .. . ..+..+.+.|+++|.+++..
T Consensus 225 ~~d~vi~~-----~g--~--~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 225 GIDIYFEN-----VG--G--KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp CEEEEEES-----SC--H--HHHHHHHTTEEEEEEEEECC
T ss_pred CCcEEEEC-----CC--H--HHHHHHHHHHhcCCEEEEEc
Confidence 68998853 21 1 36788889999999998854
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=88.54 E-value=5.1 Score=29.40 Aligned_cols=97 Identities=7% Similarity=-0.058 Sum_probs=58.9
Q ss_pred CcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
..+|+=+|+| ..+..++... ... |+++|.++..++.+. . .+.++.+|..+...+....-...|.|++.
T Consensus 9 ~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~------~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (234)
T 2aef_A 9 SRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR-S------GANFVHGDPTRVSDLEKANVRGARAVIVD 78 (234)
T ss_dssp -CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-T------TCEEEESCTTCHHHHHHTTCTTCSEEEEC
T ss_pred CCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-c------CCeEEEcCCCCHHHHHhcCcchhcEEEEc
Confidence 4578888875 5555555442 234 899999988777665 1 36788899887543322222367888863
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+.+.....+....+.+.|+..++.....
T Consensus 79 -----~~~d~~n~~~~~~a~~~~~~~~iia~~~~ 107 (234)
T 2aef_A 79 -----LESDSETIHCILGIRKIDESVRIIAEAER 107 (234)
T ss_dssp -----CSCHHHHHHHHHHHHHHCSSSEEEEECSS
T ss_pred -----CCCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 23233344445556667887677765433
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=88.37 E-value=0.97 Score=35.69 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=60.8
Q ss_pred CCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc----cCCCCCccc
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPHNSVD 152 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~~~~~D 152 (218)
++.+||-+|+| .|..+.++++.. .+ +|++++.++..++.++..-. ..+ .|..+.++. .......+|
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~~Ga-----~~~--~~~~~~~~~~~v~~~~~g~g~D 238 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKVGA-----DYV--INPFEEDVVKEVMDITDGNGVD 238 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHHTC-----SEE--ECTTTSCHHHHHHHHTTTSCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCC-----CEE--ECCCCcCHHHHHHHHcCCCCCC
Confidence 77899999996 467777777653 35 89999999998888875311 111 122221110 111223689
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|+.. .. ....+..+.+.|+++|.++....
T Consensus 239 ~vid~-----~g---~~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 239 VFLEF-----SG---APKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp EEEEC-----SC---CHHHHHHHHHHEEEEEEEEECCC
T ss_pred EEEEC-----CC---CHHHHHHHHHHHhcCCEEEEEcc
Confidence 99853 21 12466778899999999888653
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.34 E-value=0.97 Score=35.58 Aligned_cols=98 Identities=12% Similarity=-0.022 Sum_probs=62.5
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc----cCCCCC
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~~~ 149 (218)
...++.+||-.|+ |.|..+..++... .+++++++.++..++.++.. +.. .. .|..+.++. ......
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~----ga~-~~--~d~~~~~~~~~~~~~~~~~ 234 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKAL----GAD-ET--VNYTHPDWPKEVRRLTGGK 234 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----TCS-EE--EETTSTTHHHHHHHHTTTT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc----CCC-EE--EcCCcccHHHHHHHHhCCC
Confidence 3457789999998 5777777777653 35899999999988888653 111 11 233322111 111223
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+|+++.... . ..+..+.+.|+++|.+++...
T Consensus 235 ~~d~vi~~~g----~-----~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 235 GADKVVDHTG----A-----LYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp CEEEEEESSC----S-----SSHHHHHHHEEEEEEEEESSC
T ss_pred CceEEEECCC----H-----HHHHHHHHhhccCCEEEEEec
Confidence 6999986432 1 245677889999999887553
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.30 E-value=1.7 Score=34.40 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=61.5
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc----cCCCCC
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~~~ 149 (218)
...++.+||-.|+ |.|..+..++... .+++++++.++..++.++..-. . .. .|..+.+.. ......
T Consensus 167 ~~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga----~-~~--~d~~~~~~~~~~~~~~~~~ 238 (351)
T 1yb5_A 167 CVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGA----H-EV--FNHREVNYIDKIKKYVGEK 238 (351)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC----S-EE--EETTSTTHHHHHHHHHCTT
T ss_pred CCCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHcCC----C-EE--EeCCCchHHHHHHHHcCCC
Confidence 3457789999997 4566666666543 3589999999998888765411 1 11 232222111 111223
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+|+++.... ...+..+.+.|+++|.+++...
T Consensus 239 ~~D~vi~~~G---------~~~~~~~~~~l~~~G~iv~~g~ 270 (351)
T 1yb5_A 239 GIDIIIEMLA---------NVNLSKDLSLLSHGGRVIVVGS 270 (351)
T ss_dssp CEEEEEESCH---------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CcEEEEECCC---------hHHHHHHHHhccCCCEEEEEec
Confidence 6899985321 1356778899999999888653
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=88.22 E-value=2.3 Score=29.07 Aligned_cols=105 Identities=15% Similarity=0.101 Sum_probs=54.0
Q ss_pred CCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.+..+|+=+|+|. |......+... ...|+++|.++..++.++.. ....++..|..+........-..+|+|+.
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~-----~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~ 90 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSE-----FSGFTVVGDAAEFETLKECGMEKADMVFA 90 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTT-----CCSEEEESCTTSHHHHHTTTGGGCSEEEE
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhc-----CCCcEEEecCCCHHHHHHcCcccCCEEEE
Confidence 4567899998863 33322222221 25899999988765443311 12345556654432211111235788886
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
. .+.......+..+.+.+.+...++....+..
T Consensus 91 ~-----~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~ 122 (155)
T 2g1u_A 91 F-----TNDDSTNFFISMNARYMFNVENVIARVYDPE 122 (155)
T ss_dssp C-----SSCHHHHHHHHHHHHHTSCCSEEEEECSSGG
T ss_pred E-----eCCcHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 3 2222333444445555556666666554433
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=88.06 E-value=0.46 Score=37.80 Aligned_cols=100 Identities=13% Similarity=-0.025 Sum_probs=61.1
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc-ccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED-DILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~~~D~ 153 (218)
...++.+||-+|+| .|..+.++++.. .++|++++.++..++.++.. +.. .++ |..+. +....+. +.+|+
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~l----Ga~-~v~--~~~~~~~~~~~~~-~~~D~ 246 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM----GAD-HYI--ATLEEGDWGEKYF-DTFDL 246 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH----TCS-EEE--EGGGTSCHHHHSC-SCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHc----CCC-EEE--cCcCchHHHHHhh-cCCCE
Confidence 45678899999986 467777777653 25899999999888888763 111 111 11111 1111122 47999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+...... + ...+..+.+.|+++|.++....
T Consensus 247 vid~~g~~--~----~~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 247 IVVCASSL--T----DIDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp EEECCSCS--T----TCCTTTGGGGEEEEEEEEECCC
T ss_pred EEECCCCC--c----HHHHHHHHHHhcCCCEEEEecC
Confidence 98643210 0 1234556789999999887653
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=87.99 E-value=0.93 Score=35.40 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=62.7
Q ss_pred hcCCCcEEEEec-C-CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc----ccCCCCC
Q psy1107 76 QDVGEGVLLEVG-C-GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI----LNQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiG-c-G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~ 149 (218)
...++.+||-.| + |.|..+..+++.. .+++++++.++..++.++.. +.. ..+ |..+.+. .......
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----Ga~-~~~--~~~~~~~~~~~~~~~~~~ 208 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKAL----GAW-ETI--DYSHEDVAKRVLELTDGK 208 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH----TCS-EEE--ETTTSCHHHHHHHHTTTC
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----CCC-EEE--eCCCccHHHHHHHHhCCC
Confidence 356788999998 3 3677777777653 35999999999998888754 111 111 2222111 1112234
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+|+|+.. .. . ..+..+.+.|+++|.+++....
T Consensus 209 g~Dvvid~-----~g--~--~~~~~~~~~l~~~G~iv~~g~~ 241 (325)
T 3jyn_A 209 KCPVVYDG-----VG--Q--DTWLTSLDSVAPRGLVVSFGNA 241 (325)
T ss_dssp CEEEEEES-----SC--G--GGHHHHHTTEEEEEEEEECCCT
T ss_pred CceEEEEC-----CC--h--HHHHHHHHHhcCCCEEEEEecC
Confidence 69998853 21 1 3566788999999999986543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=87.93 E-value=1.3 Score=36.46 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=61.9
Q ss_pred hcCCCcEEEEecC-C-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc------------
Q psy1107 76 QDVGEGVLLEVGC-G-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD------------ 141 (218)
Q Consensus 76 ~~~~~~~vLDiGc-G-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------------ 141 (218)
...++.+||=+|+ | .|..+.++++.. .+++++++.++..++.++..-. . .++ |....+
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~lGa----~-~vi--~~~~~d~~~~~~~~~~~~ 296 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRAMGA----E-AII--DRNAEGYRFWKDENTQDP 296 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTC----C-EEE--ETTTTTCCSEEETTEECH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC----c-EEE--ecCcCcccccccccccch
Confidence 3467889999997 4 677788887654 3688999999999998876411 1 111 111100
Q ss_pred ---------cccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 142 ---------ILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 142 ---------~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+........+|+|+.. .. . ..+..+.++|+++|.+++..
T Consensus 297 ~~~~~~~~~i~~~t~g~g~Dvvid~-----~G--~--~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 297 KEWKRFGKRIRELTGGEDIDIVFEH-----PG--R--ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEEC-----SC--H--HHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEc-----CC--c--hhHHHHHHHhhCCcEEEEEe
Confidence 0001122378988842 21 1 46788889999999998854
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=87.80 E-value=0.55 Score=37.05 Aligned_cols=99 Identities=17% Similarity=0.127 Sum_probs=61.2
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc--ccccCCCCCcc
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED--DILNQVPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~~ 151 (218)
...++.+||-.|+ |.|..+..+++.. .+++++++.++..++.+++. +. ..++..+ .+. .+........+
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----ga-~~v~~~~-~~~~~~v~~~~~~~g~ 228 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSV----GA-DIVLPLE-EGWAKAVREATGGAGV 228 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH----TC-SEEEESS-TTHHHHHHHHTTTSCE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----CC-cEEecCc-hhHHHHHHHHhCCCCc
Confidence 3467889999997 3677777777653 35999999999888888764 11 1122111 110 01111222369
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+|+..... ..+..+.+.|+++|.+++...
T Consensus 229 Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~G~ 258 (342)
T 4eye_A 229 DMVVDPIGG---------PAFDDAVRTLASEGRLLVVGF 258 (342)
T ss_dssp EEEEESCC-----------CHHHHHHTEEEEEEEEEC--
T ss_pred eEEEECCch---------hHHHHHHHhhcCCCEEEEEEc
Confidence 999853211 246778889999999998653
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.77 E-value=1.4 Score=34.45 Aligned_cols=96 Identities=14% Similarity=0.196 Sum_probs=58.4
Q ss_pred CCCc-EEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc--ccccCCCCCccc
Q psy1107 78 VGEG-VLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED--DILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~-~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~~D 152 (218)
.++. +||-.|+ |.|..+.++++.. .+++++++.++..++.++..-. . .++ |..+. ..........+|
T Consensus 147 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~lGa----~-~~i--~~~~~~~~~~~~~~~~~~d 218 (328)
T 1xa0_A 147 TPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGA----K-EVL--AREDVMAERIRPLDKQRWA 218 (328)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTC----S-EEE--ECC---------CCSCCEE
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHcCC----c-EEE--ecCCcHHHHHHHhcCCccc
Confidence 4454 7999997 4677788887653 3589999999888888876411 1 111 11111 111122234689
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|+... . . ..+..+.+.|+++|.+++...
T Consensus 219 ~vid~~-----g--~--~~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 219 AAVDPV-----G--G--RTLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp EEEECS-----T--T--TTHHHHHHTEEEEEEEEECSC
T ss_pred EEEECC-----c--H--HHHHHHHHhhccCCEEEEEee
Confidence 888532 1 1 246677889999999988643
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=87.77 E-value=2.2 Score=32.04 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=50.1
Q ss_pred CCcEEEEecC-CCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-cCCCceEEeccCCCcccccC-CC-----
Q psy1107 79 GEGVLLEVGC-GVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-DASKMNVFPCDVTEDDILNQ-VP----- 147 (218)
Q Consensus 79 ~~~~vLDiGc-G~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~-~~----- 147 (218)
.++++|=.|+ |.| ..+..+++.+ .+|+.++.+...++.+...... .+.++.++.+|+.+.+-... +.
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 98 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEG--ADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK 98 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCC--CEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 4668888887 554 2344555555 5899999988776655544322 23578999999987532111 00
Q ss_pred CCcccEEEechhh
Q psy1107 148 HNSVDIATLIFVL 160 (218)
Q Consensus 148 ~~~~D~i~~~~~l 160 (218)
-+..|+++.+..+
T Consensus 99 ~g~id~li~~Ag~ 111 (266)
T 3o38_A 99 AGRLDVLVNNAGL 111 (266)
T ss_dssp HSCCCEEEECCCC
T ss_pred hCCCcEEEECCCc
Confidence 1367998886543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=87.73 E-value=0.63 Score=34.75 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=50.1
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC-C-----CC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV-P-----HN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~-----~~ 149 (218)
.++++|=.|++.| ..+..+++.+ .+|+.++.++...+.+.......+.++.++.+|+.+..-...+ . -+
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREG--AAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFG 85 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4567887887654 3344444444 5899999998877666554443446788999999885321110 0 13
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
..|+++.+..
T Consensus 86 ~id~li~~Ag 95 (253)
T 3qiv_A 86 GIDYLVNNAA 95 (253)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899888653
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.51 E-value=1.7 Score=33.12 Aligned_cols=80 Identities=13% Similarity=0.026 Sum_probs=47.1
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeC-CHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----C
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDI-SPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----H 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~-s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~ 148 (218)
.++++|=.|++.| ..+..+++.+ .+|+.++. ++...+.........+.++.++.+|+.+.+-... +. -
T Consensus 28 ~~k~~lVTGas~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 105 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIARALAASG--FDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF 105 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC--CeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4567787777655 2344444444 58888885 5555544443333334678999999988542111 10 1
Q ss_pred CcccEEEechhh
Q psy1107 149 NSVDIATLIFVL 160 (218)
Q Consensus 149 ~~~D~i~~~~~l 160 (218)
+..|+++.+..+
T Consensus 106 g~iD~lvnnAg~ 117 (280)
T 4da9_A 106 GRIDCLVNNAGI 117 (280)
T ss_dssp SCCCEEEEECC-
T ss_pred CCCCEEEECCCc
Confidence 368998886543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=87.35 E-value=0.54 Score=36.32 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=59.8
Q ss_pred cCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC-cccccCCCCCcccE
Q psy1107 77 DVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE-DDILNQVPHNSVDI 153 (218)
Q Consensus 77 ~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~~~~D~ 153 (218)
..++.+||-.|+ |.|..+..++... .+++++++.++..++.++..- .. .. .|..+ .+..... ..+|+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~g----a~-~~--~~~~~~~~~~~~~--~~~d~ 192 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALG----AE-EA--ATYAEVPERAKAW--GGLDL 192 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTT----CS-EE--EEGGGHHHHHHHT--TSEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcC----CC-EE--EECCcchhHHHHh--cCceE
Confidence 567889999998 3677777777653 359999999998888886541 11 11 12221 1111112 36899
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+. .. . ..+..+.+.|+++|.++...
T Consensus 193 vid-~g-------~--~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 193 VLE-VR-------G--KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp EEE-CS-------C--TTHHHHHTTEEEEEEEEEC-
T ss_pred EEE-CC-------H--HHHHHHHHhhccCCEEEEEe
Confidence 885 21 1 24677888999999988754
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=87.33 E-value=2.6 Score=33.04 Aligned_cols=97 Identities=8% Similarity=-0.084 Sum_probs=60.3
Q ss_pred CcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
..+++=+|+ |..+..+++.. .+. ++++|.+++.++ ++. ..+.++.+|..+.+......-...|.+++.
T Consensus 115 ~~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~------~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~ 184 (336)
T 1lnq_A 115 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLR------SGANFVHGDPTRVSDLEKANVRGARAVIVD 184 (336)
T ss_dssp -CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH------TTCEEEESCTTSHHHHHHTCSTTEEEEEEC
T ss_pred cCCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh------CCcEEEEeCCCCHHHHHhcChhhccEEEEc
Confidence 346877776 45555555432 234 999999999888 654 257889999988654433333468888763
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+.+......-...+.+.|...++.....
T Consensus 185 -----~~~d~~n~~~~~~ar~~~~~~~iiar~~~ 213 (336)
T 1lnq_A 185 -----LESDSETIHCILGIRKIDESVRIIAEAER 213 (336)
T ss_dssp -----CSSHHHHHHHHHHHHTTCTTSEEEEECSS
T ss_pred -----CCccHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 22233334444556677787777775533
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=87.17 E-value=0.85 Score=34.43 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=58.4
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCH---HHHHHHHhCCcccCCCceEEeccCCCcccccCC-C----
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISP---RAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV-P---- 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~---~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~---- 147 (218)
.++++|=.|++.| ..+..+++.+ .+|+.++.+. ..++.+.......+.++.++.+|+.+.+-...+ .
T Consensus 10 ~~k~vlVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 10 KNKVIVIAGGIKNLGALTAKTFALES--VNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEK 87 (262)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHTTSS--CEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 4567887777655 2233344444 5788876543 333333332222345788999999875321111 0
Q ss_pred -CCcccEEEechhhcC------CCcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 148 -HNSVDIATLIFVLSA------IHPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 -~~~~D~i~~~~~l~~------~~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
-+..|+++.+..+.. .+++++. .+.+.+...++++|.++...
T Consensus 88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is 147 (262)
T 3ksu_A 88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA 147 (262)
T ss_dssp HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 146899887654322 2223333 23344455566778777654
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=87.17 E-value=2.3 Score=32.01 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=47.3
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCH--HHHHHHHhCCcccCCCceEEeccCCCcccc-cCCCCCccc
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISP--RAVNFFKLNPLYDASKMNVFPCDVTEDDIL-NQVPHNSVD 152 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~--~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~~D 152 (218)
.++++|=-|.+.| ..+..+++.+ ++|+..|.+. +..+.... .+.+..++.+|+.+..-. ..+..+..|
T Consensus 8 ~GKvalVTGas~GIG~aiA~~la~~G--a~Vvi~~r~~~~~~~~~~~~----~g~~~~~~~~Dv~d~~~v~~~~~~g~iD 81 (247)
T 4hp8_A 8 EGRKALVTGANTGLGQAIAVGLAAAG--AEVVCAARRAPDETLDIIAK----DGGNASALLIDFADPLAAKDSFTDAGFD 81 (247)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCCHHHHHHHHH----TTCCEEEEECCTTSTTTTTTSSTTTCCC
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHcC--CEEEEEeCCcHHHHHHHHHH----hCCcEEEEEccCCCHHHHHHHHHhCCCC
Confidence 4667777777666 2344555555 5888888764 33333332 346788999999886432 224456899
Q ss_pred EEEechh
Q psy1107 153 IATLIFV 159 (218)
Q Consensus 153 ~i~~~~~ 159 (218)
+++.+..
T Consensus 82 iLVNNAG 88 (247)
T 4hp8_A 82 ILVNNAG 88 (247)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9988553
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=87.13 E-value=1.1 Score=34.21 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=47.9
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC-----CCCc
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV-----PHNS 150 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-----~~~~ 150 (218)
.++++|=.|++.| ..+..+++.+ .+|+.++.++...+.+.......+.++.++.+|+.+......+ ..+.
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~ 109 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAG--AHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAP 109 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 4667787776554 2333444444 5899999887665554443333356788999999875321110 0146
Q ss_pred ccEEEechh
Q psy1107 151 VDIATLIFV 159 (218)
Q Consensus 151 ~D~i~~~~~ 159 (218)
.|+++.+..
T Consensus 110 iD~lvnnAg 118 (275)
T 4imr_A 110 VDILVINAS 118 (275)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899888654
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=86.95 E-value=1.8 Score=33.28 Aligned_cols=108 Identities=13% Similarity=0.113 Sum_probs=61.5
Q ss_pred CCcEEEEecCCC-ch----hHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----
Q psy1107 79 GEGVLLEVGCGV-GN----FIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP----- 147 (218)
Q Consensus 79 ~~~~vLDiGcG~-G~----~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~----- 147 (218)
.++++|=.|++. .. .+..+++.+ .+|+.++.+....+.+....... ..+.++.+|+.+.+-... +.
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQG--AEVALTYLSETFKKRVDPLAESL-GVKLTVPCDVSDAESVDNMFKVLAEE 105 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHHHHH-TCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456888888754 23 344444544 58999998875544443332222 346788999988532111 00
Q ss_pred CCcccEEEechhhc----------CCCcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 148 HNSVDIATLIFVLS----------AIHPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 ~~~~D~i~~~~~l~----------~~~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
-+..|+++.+..+. ..+.+++. .+++.+...++.+|.++...
T Consensus 106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 14689998865432 12223333 23344566667788887754
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.75 E-value=0.42 Score=32.43 Aligned_cols=44 Identities=9% Similarity=0.009 Sum_probs=30.8
Q ss_pred cCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 144 NQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 144 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
-.++...||.|+....-..-...-...++..+...|||||.|..
T Consensus 53 VsLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 53 ITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred ccCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence 35677899999874322211012247899999999999999886
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=86.54 E-value=1.5 Score=33.13 Aligned_cols=79 Identities=9% Similarity=0.016 Sum_probs=48.3
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-cCCCceEEeccCCCcccccCC------CC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-DASKMNVFPCDVTEDDILNQV------PH 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~------~~ 148 (218)
.++++|=.|++.| ..+..+++.+ .+|+.++-+...++.+...... .+.++.++.+|+.+.+-...+ .-
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAG--ARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAF 96 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4567777776654 2333444444 5899999988776655443322 346789999999885421110 01
Q ss_pred CcccEEEechh
Q psy1107 149 NSVDIATLIFV 159 (218)
Q Consensus 149 ~~~D~i~~~~~ 159 (218)
+..|+++.+..
T Consensus 97 g~id~lv~nAg 107 (266)
T 4egf_A 97 GGLDVLVNNAG 107 (266)
T ss_dssp TSCSEEEEECC
T ss_pred CCCCEEEECCC
Confidence 36898887654
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.49 E-value=0.63 Score=36.75 Aligned_cols=99 Identities=11% Similarity=0.115 Sum_probs=61.7
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC-ccccc---CCCCC
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE-DDILN---QVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~---~~~~~ 149 (218)
...++.+||-.|+ |.|..+..++... ..++++++.++...+.++.. +.. .. .|..+ .++.. ....+
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~----g~~-~~--~d~~~~~~~~~~~~~~~~~ 237 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSI----GGE-VF--IDFTKEKDIVGAVLKATDG 237 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHT----TCC-EE--EETTTCSCHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHc----CCc-eE--EecCccHhHHHHHHHHhCC
Confidence 3457789999998 3667776666543 35899999888888877654 111 11 24331 11110 11112
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+|+++.... ....+..+.+.|+++|.+++...
T Consensus 238 ~~D~vi~~~g--------~~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 238 GAHGVINVSV--------SEAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp CEEEEEECSS--------CHHHHHHHTTSEEEEEEEEECCC
T ss_pred CCCEEEECCC--------cHHHHHHHHHHHhcCCEEEEEeC
Confidence 6899885321 12467888899999999888654
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.34 E-value=1.8 Score=32.58 Aligned_cols=79 Identities=18% Similarity=0.142 Sum_probs=46.5
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc--CCCceEEeccCCCcccccC-CC-----
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD--ASKMNVFPCDVTEDDILNQ-VP----- 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~-~~----- 147 (218)
.++++|=.|++.| ..+..+++.+ .+|++++.++...+.+....... +.++.++.+|+.+.+-... +.
T Consensus 12 ~~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 12 TDRVVLITGGGSGLGRATAVRLAAEG--AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3567887776554 2333444444 58999999887665443322211 3568888999987532111 10
Q ss_pred CCcccEEEechh
Q psy1107 148 HNSVDIATLIFV 159 (218)
Q Consensus 148 ~~~~D~i~~~~~ 159 (218)
-+.+|+++.+..
T Consensus 90 ~g~id~lv~nAg 101 (267)
T 1iy8_A 90 FGRIDGFFNNAG 101 (267)
T ss_dssp HSCCSEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 135798888654
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.18 E-value=2.8 Score=31.77 Aligned_cols=109 Identities=11% Similarity=0.069 Sum_probs=60.9
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCC-HHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----C
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDIS-PRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----H 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~ 148 (218)
.++++|=.|++.| ..+..+++.+ .+|+.++.+ ....+.........+.++.++.+|+.+.+-... +. -
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEG--AAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEAL 107 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5678888887665 2344444444 578887554 343333333223334678899999987532111 00 1
Q ss_pred CcccEEEechhhcC------CCcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSA------IHPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~------~~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
+..|+++.+..+.. .+++++. .+++.+.+.++++|.++...
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 36899888654322 2223333 33455567777788777654
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=86.04 E-value=3.2 Score=37.84 Aligned_cols=83 Identities=17% Similarity=0.087 Sum_probs=54.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc-------cc----ccCC
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED-------DI----LNQV 146 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------~~----~~~~ 146 (218)
.+..+++|+.||.|.++.-+...+-.-.+.++|+++.+.+..+.+.. +..++..|+.+. ++ ...+
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p----~~~~~~~DI~~l~~~~~~~di~~~~~~~l 613 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP----GSTVFTEDCNILLKLVMAGETTNSRGQRL 613 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT----TSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred CCCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC----CCccccccHHHHhhhccchhhhhhhhhhc
Confidence 35679999999999999888777631268899999999988877643 334444443210 00 0112
Q ss_pred C-CCcccEEEechhhcCCC
Q psy1107 147 P-HNSVDIATLIFVLSAIH 164 (218)
Q Consensus 147 ~-~~~~D~i~~~~~l~~~~ 164 (218)
+ .+.+|+|+....-..++
T Consensus 614 p~~~~vDll~GGpPCQ~FS 632 (1002)
T 3swr_A 614 PQKGDVEMLCGGPPCQGFS 632 (1002)
T ss_dssp CCTTTCSEEEECCCCTTCC
T ss_pred ccCCCeeEEEEcCCCcchh
Confidence 2 34789999866544443
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=85.96 E-value=0.54 Score=35.72 Aligned_cols=48 Identities=21% Similarity=0.390 Sum_probs=31.8
Q ss_pred CcccEEEechh----hcCCCc-ch----HHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 149 NSVDIATLIFV----LSAIHP-NK----FSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 149 ~~~D~i~~~~~----l~~~~~-~~----~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
++||+|+++.- .||... +| ...+-..+.+.|+|||.+++..|+..|-.
T Consensus 210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~ 266 (324)
T 3trk_A 210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRT 266 (324)
T ss_dssp CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHH
T ss_pred CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccc
Confidence 68999998542 122210 01 12333566789999999999999988754
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=85.50 E-value=2.8 Score=31.30 Aligned_cols=76 Identities=13% Similarity=-0.008 Sum_probs=45.5
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----CC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----HN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~~ 149 (218)
.++++|=.|++.| ..+..+++.+ .+|+.++.++...+...... +.++.++.+|+.+.+-... +. -+
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (254)
T 1hdc_A 4 SGKTVIITGGARGLGAEAARQAVAAG--ARVVLADVLDEEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREEFG 78 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh---CCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3467777776544 2233344444 58999999887766554443 2467888899887532111 10 13
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
..|+++.+..
T Consensus 79 ~iD~lv~nAg 88 (254)
T 1hdc_A 79 SVDGLVNNAG 88 (254)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6898887654
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=85.43 E-value=3 Score=31.73 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=48.0
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----CC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----HN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~~ 149 (218)
.++++|=.|++.| ..+..+++.+ .+|+++|.++...+.+.... +.++.++.+|+.+.+-... +. -+
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 102 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADEG--CHVLCADIDGDAADAAATKI---GCGAAACRVDVSDEQQIIAMVDACVAAFG 102 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHH---CSSCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHc---CCcceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4567787777655 2344444444 58999999887766554432 4578889999987532111 00 13
Q ss_pred cccEEEechhh
Q psy1107 150 SVDIATLIFVL 160 (218)
Q Consensus 150 ~~D~i~~~~~l 160 (218)
..|+++.+..+
T Consensus 103 ~iD~lvnnAg~ 113 (277)
T 3gvc_A 103 GVDKLVANAGV 113 (277)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 68998876543
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=85.41 E-value=0.51 Score=38.65 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=31.7
Q ss_pred CcEEEEecCCCchhHHHHhhcC----C-ccEEEEEeCCHHHHHHHHhC
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS----K-ICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~----~-~~~v~~~D~s~~~~~~~~~~ 122 (218)
..+|+|+|.|+|.++..++... + ..++..+|+|+...+.-++.
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~ 185 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRET 185 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHH
Confidence 5799999999999887776431 1 23899999999765544443
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.39 E-value=1.5 Score=33.19 Aligned_cols=109 Identities=15% Similarity=0.083 Sum_probs=59.7
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEe-CCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC-C-----C
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACD-ISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV-P-----H 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D-~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~-----~ 148 (218)
.++++|=.|++.| ..+..+++.+ .+++..+ -+....+.........+.++.++.+|+.+.+-...+ . -
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G--~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDG--FTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF 103 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHT--CEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4567887877665 2344455555 4777663 344444433333233345788999999875321111 0 1
Q ss_pred CcccEEEechhhcCC------CcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSAI------HPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~------~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
+..|+++.+..+... +++++. .+++.+.+.++++|.++...
T Consensus 104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 368998886543322 222232 23445566677788877754
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=85.26 E-value=6 Score=25.95 Aligned_cols=98 Identities=14% Similarity=0.018 Sum_probs=51.9
Q ss_pred CcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
..+|+=+|+| ..+..++... ...+++++|.++..++.+.... .+.++.+|..+........-..+|+|+..
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~-----~~~~~~~d~~~~~~l~~~~~~~~d~vi~~ 76 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAV 76 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc-----CcEEEEcCCCCHHHHHHcCcccCCEEEEe
Confidence 3578888875 4444443221 1258999999988776665321 24455666654322111112358988864
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+.......+..+.+.+.++ .+++...
T Consensus 77 -----~~~~~~~~~~~~~~~~~~~~-~ii~~~~ 103 (140)
T 1lss_A 77 -----TGKEEVNLMSSLLAKSYGIN-KTIARIS 103 (140)
T ss_dssp -----CSCHHHHHHHHHHHHHTTCC-CEEEECS
T ss_pred -----eCCchHHHHHHHHHHHcCCC-EEEEEec
Confidence 22223334444555667775 4555443
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=85.17 E-value=1.2 Score=34.82 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=59.2
Q ss_pred CCCc-EEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEe-ccCCCcccccCCCCCcccE
Q psy1107 78 VGEG-VLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFP-CDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 78 ~~~~-~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~~~D~ 153 (218)
.++. +||-.|+ |.|..+.++++.. .+++++++.++..++.+++. +.. ..+. .+... ..........+|+
T Consensus 148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~l----Ga~-~v~~~~~~~~-~~~~~~~~~~~d~ 220 (330)
T 1tt7_A 148 SPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQL----GAS-EVISREDVYD-GTLKALSKQQWQG 220 (330)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHH----TCS-EEEEHHHHCS-SCCCSSCCCCEEE
T ss_pred CCCCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----CCc-EEEECCCchH-HHHHHhhcCCccE
Confidence 4454 8999997 3677777777653 25899999988888887653 111 1111 11100 0111222346898
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+.. .. . ..+..+.+.|+++|.+++...
T Consensus 221 vid~-----~g--~--~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 221 AVDP-----VG--G--KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp EEES-----CC--T--HHHHHHHTTEEEEEEEEECCC
T ss_pred EEEC-----Cc--H--HHHHHHHHhhcCCCEEEEEec
Confidence 8853 22 1 357788899999999988653
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=85.13 E-value=2.9 Score=31.42 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=46.8
Q ss_pred cEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC------CCCcc
Q psy1107 81 GVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV------PHNSV 151 (218)
Q Consensus 81 ~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~------~~~~~ 151 (218)
++||=-|++.| ..+..+++.+ ++|+.+|.++...+...+. ..++.++.+|+.+.+-...+ .-++.
T Consensus 3 K~vlVTGas~GIG~aia~~la~~G--a~V~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i 76 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAG--DKVCFIDIDEKRSADFAKE----RPNLFYFHGDVADPLTLKKFVEYAMEKLQRI 76 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHTT----CTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHh----cCCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46777777766 3344555555 6899999998877665543 34688899999885321110 01578
Q ss_pred cEEEech
Q psy1107 152 DIATLIF 158 (218)
Q Consensus 152 D~i~~~~ 158 (218)
|+++.+.
T Consensus 77 DiLVNNA 83 (247)
T 3ged_A 77 DVLVNNA 83 (247)
T ss_dssp CEEEECC
T ss_pred CEEEECC
Confidence 9888754
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=85.04 E-value=0.91 Score=31.61 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=40.2
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE 139 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~ 139 (218)
-..-|||+|-|+|..-..+.+..|+.+|+++|-.- +....-.+..-.++.+|+.+
T Consensus 40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~------~~hp~~~P~~e~~ilGdi~~ 94 (174)
T 3iht_A 40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAV------ASHPDSTPPEAQLILGDIRE 94 (174)
T ss_dssp CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSC------CCCGGGCCCGGGEEESCHHH
T ss_pred CCCceEEecCCCChhHHHHHHhCCCCcEEEEEeee------ccCCCCCCchHheecccHHH
Confidence 45789999999999999999999999999999411 11111223456777787765
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=84.92 E-value=2.3 Score=33.87 Aligned_cols=95 Identities=18% Similarity=0.150 Sum_probs=59.1
Q ss_pred CCCcEEEEecCC--CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc---cCCCCCccc
Q psy1107 78 VGEGVLLEVGCG--VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL---NQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG--~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~~~~~D 152 (218)
.++.+||=.|++ .|..+.++++.. .++++++. ++..++.++..-. .+++ |..+.++. .....+.+|
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~~lGa-----~~vi--~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAKSRGA-----EEVF--DYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHTTC-----SEEE--ETTSTTHHHHHHHHTTTCCC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHHHcCC-----cEEE--ECCCchHHHHHHHHccCCcc
Confidence 567899999983 788888888764 35888875 8888888876521 1122 22221111 111223589
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhc-cCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIML-KSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~L-k~gG~li~~~ 189 (218)
+|+-. .. -...+..+.+.| +++|.+++..
T Consensus 234 ~v~d~-----~g---~~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 234 YALDC-----IT---NVESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp EEEES-----SC---SHHHHHHHHHHSCTTCEEEEESS
T ss_pred EEEEC-----CC---chHHHHHHHHHhhcCCCEEEEEe
Confidence 98842 21 124567777888 6999988754
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.62 E-value=1 Score=35.62 Aligned_cols=98 Identities=14% Similarity=0.061 Sum_probs=61.0
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc---CCCCCc
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN---QVPHNS 150 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~~~~ 150 (218)
...++.+||-.|+ |.|..+..+++.. .++|++++.++..++.+++.- .. .. .|..+.+... ......
T Consensus 164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lG----a~-~~--~~~~~~~~~~~~~~~~~~g 235 (353)
T 4dup_A 164 GLTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERLG----AK-RG--INYRSEDFAAVIKAETGQG 235 (353)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHT----CS-EE--EETTTSCHHHHHHHHHSSC
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcC----CC-EE--EeCCchHHHHHHHHHhCCC
Confidence 3467889998853 3677777777653 358999999999988887641 11 11 1222211100 011346
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|+++... .. ..+..+.+.|+++|.+++...
T Consensus 236 ~Dvvid~~-----g~----~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 236 VDIILDMI-----GA----AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp EEEEEESC-----CG----GGHHHHHHTEEEEEEEEECCC
T ss_pred ceEEEECC-----CH----HHHHHHHHHhccCCEEEEEEe
Confidence 89988532 11 246677889999999888653
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=84.57 E-value=1.7 Score=34.03 Aligned_cols=98 Identities=10% Similarity=0.071 Sum_probs=61.2
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CCCCC
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~~~ 149 (218)
...++.+||-.|+ |.|..+..++... .+++++++.++..++.++.. +.. .. .|..+.+... .....
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~----g~~-~~--~d~~~~~~~~~i~~~~~~~ 213 (333)
T 1wly_A 142 KVKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKL----GCH-HT--INYSTQDFAEVVREITGGK 213 (333)
T ss_dssp CCCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----TCS-EE--EETTTSCHHHHHHHHHTTC
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----CCC-EE--EECCCHHHHHHHHHHhCCC
Confidence 3457789999995 5677777776553 35999999999888877653 111 11 2332221110 11123
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+|+++.... . ..+..+.+.|+++|.+++...
T Consensus 214 ~~d~vi~~~g-------~--~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 214 GVDVVYDSIG-------K--DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp CEEEEEECSC-------T--TTHHHHHHTEEEEEEEEECCC
T ss_pred CCeEEEECCc-------H--HHHHHHHHhhccCCEEEEEec
Confidence 6899885421 1 356778889999999888653
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.56 E-value=2 Score=32.29 Aligned_cols=80 Identities=9% Similarity=-0.096 Sum_probs=44.4
Q ss_pred CCcEEEEecCCCchhHHHHhhcC--CccEEEEEeC-CHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----CC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS--KICYIHACDI-SPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----HN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~-s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~~ 149 (218)
++++||=.|+ +|..+..+++.. ...++++++- ++...+.........+.++.++.+|+.+.+-... +. -+
T Consensus 20 ~~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 98 (274)
T 1ja9_A 20 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG 98 (274)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3567776665 455554444331 1258888887 6655544333222224568889999987532111 11 02
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
.+|+++....
T Consensus 99 ~~d~vi~~Ag 108 (274)
T 1ja9_A 99 GLDFVMSNSG 108 (274)
T ss_dssp CEEEEECCCC
T ss_pred CCCEEEECCC
Confidence 5898887553
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=84.09 E-value=2.5 Score=33.42 Aligned_cols=97 Identities=8% Similarity=0.102 Sum_probs=60.8
Q ss_pred hcCCC--cEEEEecC--CCchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc----cCC
Q psy1107 76 QDVGE--GVLLEVGC--GVGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQV 146 (218)
Q Consensus 76 ~~~~~--~~vLDiGc--G~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~ 146 (218)
...++ .+||-.|+ |.|..+..++... .+ +|++++.++..++.++.... .. . ..|..+.+.. ...
T Consensus 155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~g---~~-~--~~d~~~~~~~~~~~~~~ 227 (357)
T 2zb4_A 155 HITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSELG---FD-A--AINYKKDNVAEQLRESC 227 (357)
T ss_dssp CCCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSC---CS-E--EEETTTSCHHHHHHHHC
T ss_pred CCCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHcC---Cc-e--EEecCchHHHHHHHHhc
Confidence 34567 89999997 3566666666543 35 89999999988888775321 11 1 1233222111 111
Q ss_pred CCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 147 PHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.. .+|+++.. .. ...+..+.+.|+++|.+++..
T Consensus 228 ~~-~~d~vi~~-----~G----~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 228 PA-GVDVYFDN-----VG----GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp TT-CEEEEEES-----CC----HHHHHHHHHTEEEEEEEEECC
T ss_pred CC-CCCEEEEC-----CC----HHHHHHHHHHhccCcEEEEEC
Confidence 22 68988853 21 156788889999999988754
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=83.92 E-value=2.4 Score=32.24 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=57.0
Q ss_pred CCcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHH-HHHHHhCCcccCCCceEEeccCCCcccccC-CC-----CC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRA-VNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----HN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~-~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~~ 149 (218)
+++++|=.|++.| ++..++... ...+|++++.+... .+.+.......+.++.++.+|+.+..-... +. -+
T Consensus 28 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 106 (283)
T 1g0o_A 28 EGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG 106 (283)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3567777766544 444444321 12588888876532 222222112224568888999887531111 00 13
Q ss_pred cccEEEechhhcCC------CcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAI------HPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~------~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
..|+++.+..+... +++++. .+++.+.+.++.+|.++...
T Consensus 107 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 107 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 67988886543322 223332 23344556666778777654
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=83.86 E-value=4.5 Score=30.29 Aligned_cols=78 Identities=9% Similarity=-0.020 Sum_probs=49.9
Q ss_pred CCcEEEEecCCC--c---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccC-C-----
Q psy1107 79 GEGVLLEVGCGV--G---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQ-V----- 146 (218)
Q Consensus 79 ~~~~vLDiGcG~--G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~-~----- 146 (218)
+++++|=-|+++ | ..+..+++.+ ++|+.++.++...+.+.+.....+ .++.++.+|+.+.+-... +
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~G--a~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLG--AKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK 82 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 567888888543 3 2345555555 689999998877766665544333 578899999987532110 0
Q ss_pred CCCcccEEEech
Q psy1107 147 PHNSVDIATLIF 158 (218)
Q Consensus 147 ~~~~~D~i~~~~ 158 (218)
.-+..|+++.+.
T Consensus 83 ~~G~iD~lvnnA 94 (256)
T 4fs3_A 83 DVGNIDGVYHSI 94 (256)
T ss_dssp HHCCCSEEEECC
T ss_pred HhCCCCEEEecc
Confidence 115789888754
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=83.78 E-value=3.3 Score=32.94 Aligned_cols=70 Identities=17% Similarity=0.106 Sum_probs=41.3
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..+..+|+=+||| .|......+... ..++..|.+...++.++.. +..+..|+.+.+-....- ...|+|+
T Consensus 13 ~g~~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~~~~~~~~~~~~-------~~~~~~d~~d~~~l~~~~-~~~DvVi 82 (365)
T 3abi_A 13 EGRHMKVLILGAGNIGRAIAWDLKDE--FDVYIGDVNNENLEKVKEF-------ATPLKVDASNFDKLVEVM-KEFELVI 82 (365)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESCHHHHHHHTTT-------SEEEECCTTCHHHHHHHH-TTCSEEE
T ss_pred cCCccEEEEECCCHHHHHHHHHHhcC--CCeEEEEcCHHHHHHHhcc-------CCcEEEecCCHHHHHHHH-hCCCEEE
Confidence 3456789999996 444433333222 4889999999988877643 344566776543211111 2578888
Q ss_pred e
Q psy1107 156 L 156 (218)
Q Consensus 156 ~ 156 (218)
.
T Consensus 83 ~ 83 (365)
T 3abi_A 83 G 83 (365)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=83.74 E-value=0.64 Score=36.94 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=57.5
Q ss_pred CCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+||-+|+| .|..+.++++.. .+++++++.++..++.+++.... . .++ |..+.+...... +.+|+|+..
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~lGa--~--~vi--~~~~~~~~~~~~-~g~D~vid~ 251 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDLGA--D--DYV--IGSDQAKMSELA-DSLDYVIDT 251 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTSCC--S--CEE--ETTCHHHHHHST-TTEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHcCC--c--eee--ccccHHHHHHhc-CCCCEEEEC
Confidence 77899999986 566777777653 35899999998888887733221 1 111 111111111111 268998853
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
..-. ..+..+.+.|+++|.++....
T Consensus 252 ~g~~--------~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 252 VPVH--------HALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp CCSC--------CCSHHHHTTEEEEEEEEECSC
T ss_pred CCCh--------HHHHHHHHHhccCCEEEEeCC
Confidence 2110 124556789999999888653
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.54 E-value=1.6 Score=33.95 Aligned_cols=98 Identities=10% Similarity=-0.007 Sum_probs=60.6
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc----cCCCCC
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~~~ 149 (218)
...++.+||-.|+ |.|..+..++... .+++++++.++..++.++.. +.. .. .|..+.+.. ......
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~----g~~-~~--~~~~~~~~~~~~~~~~~~~ 208 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA----GAW-QV--INYREEDLVERLKEITGGK 208 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH----TCS-EE--EETTTSCHHHHHHHHTTTC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----CCC-EE--EECCCccHHHHHHHHhCCC
Confidence 3457789999984 4666666666543 25899999999888887653 111 11 232222111 112223
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+|+++.... ...+..+.+.|+++|.+++...
T Consensus 209 ~~D~vi~~~g---------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 209 KVRVVYDSVG---------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp CEEEEEECSC---------GGGHHHHHHTEEEEEEEEECCC
T ss_pred CceEEEECCc---------hHHHHHHHHHhcCCCEEEEEec
Confidence 6899986421 1356778889999999888653
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=83.47 E-value=6.9 Score=25.75 Aligned_cols=96 Identities=18% Similarity=0.146 Sum_probs=49.6
Q ss_pred CcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
..+|+=+|+| ..+..++... ...+++++|.++...+.+... ...++.+|..+........-..+|+|+..
T Consensus 6 ~~~v~I~G~G--~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~------~~~~~~~d~~~~~~l~~~~~~~~d~vi~~ 77 (144)
T 2hmt_A 6 NKQFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYASY------ATHAVIANATEENELLSLGIRNFEYVIVA 77 (144)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTT------CSEEEECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred CCcEEEECCC--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh------CCEEEEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 3568888874 4444444321 124789999988765543321 23455667655322222212368988863
Q ss_pred hhhcCCCcc-hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPN-KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~-~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
. +.. .....+....+.+.+. .+++..
T Consensus 78 ~-----~~~~~~~~~~~~~~~~~~~~-~ii~~~ 104 (144)
T 2hmt_A 78 I-----GANIQASTLTTLLLKELDIP-NIWVKA 104 (144)
T ss_dssp C-----CSCHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred C-----CCchHHHHHHHHHHHHcCCC-eEEEEe
Confidence 2 211 2222334444555665 555544
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=83.45 E-value=2.7 Score=30.77 Aligned_cols=79 Identities=13% Similarity=0.055 Sum_probs=47.1
Q ss_pred CcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc-ccCCCceEEeccCCCcccccC-CCC-----C
Q psy1107 80 EGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPL-YDASKMNVFPCDVTEDDILNQ-VPH-----N 149 (218)
Q Consensus 80 ~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~~~~~-~~~-----~ 149 (218)
.+++|=.|++.| ..+..+++.+ .+|+.++-+...++.+..... ..+.++.++.+|+.+.+-... +.. +
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDG--YALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 346776776544 2333444444 589999988876655543322 234678899999988542111 111 3
Q ss_pred cccEEEechhh
Q psy1107 150 SVDIATLIFVL 160 (218)
Q Consensus 150 ~~D~i~~~~~l 160 (218)
..|+++.+..+
T Consensus 80 ~id~li~~Ag~ 90 (235)
T 3l77_A 80 DVDVVVANAGL 90 (235)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 68998886544
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=83.42 E-value=2.5 Score=31.82 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=60.3
Q ss_pred CCcEEEEecC-CCchhHHHHhhcC--CccEEEEEeCCHHH-HHHHHhCCcccCCCceEEeccCCCcccccC-CC-----C
Q psy1107 79 GEGVLLEVGC-GVGNFIFPLLSWS--KICYIHACDISPRA-VNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----H 148 (218)
Q Consensus 79 ~~~~vLDiGc-G~G~~~~~~~~~~--~~~~v~~~D~s~~~-~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~ 148 (218)
.++++|=.|+ |+|.++..++... ...+|+.++.++.. ++...... +.++.++.+|+.+.+-... +. -
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL---PAKAPLLELDVQNEEHLASLAGRVTEAI 82 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS---SSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc---CCCceEEEccCCCHHHHHHHHHHHHHHh
Confidence 3567888887 3565555555431 22588888887644 34443332 3467888999987532111 00 0
Q ss_pred C---cccEEEechhhcC-----------CCcchHHH-----------HHHHHHHhccCCeEEEEEe
Q psy1107 149 N---SVDIATLIFVLSA-----------IHPNKFST-----------VVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~---~~D~i~~~~~l~~-----------~~~~~~~~-----------~l~~~~~~Lk~gG~li~~~ 189 (218)
+ .+|+++.+..+.. .+++++.. +.+.+.+.++++|.++...
T Consensus 83 g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 148 (269)
T 2h7i_A 83 GAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD 148 (269)
T ss_dssp CTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence 2 6899887654322 22233332 3344555666678777654
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=83.34 E-value=4.9 Score=30.46 Aligned_cols=76 Identities=18% Similarity=0.102 Sum_probs=47.3
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----CC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----HN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~~ 149 (218)
.++++|=.|++.| ..+..+++.+ .+|+.+|.++..++..... .+.++.++.+|+.+.+-... +. -+
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNG--AYVVVADVNEDAAVRVANE---IGSKAFGVRVDVSSAKDAESMVEKTTAKWG 100 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHH---HCTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHH---hCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4567887777655 2344444444 5899999988766655433 24578889999987532111 10 13
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
..|+++.+..
T Consensus 101 ~iD~lv~nAg 110 (277)
T 4dqx_A 101 RVDVLVNNAG 110 (277)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6898888654
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=83.31 E-value=5.3 Score=30.97 Aligned_cols=95 Identities=21% Similarity=0.186 Sum_probs=58.2
Q ss_pred hhcCCCcEEEEec-CC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc-cccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVG-CG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD-ILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiG-cG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~~ 151 (218)
....++.+||=+| +| .|..+.++++.. .+++++++ ++...+.+++. +.. .. .|..+.+ +.... ..+
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~-~~~~~~~~~~l----Ga~-~~--i~~~~~~~~~~~~--~g~ 216 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTA-SKRNHAFLKAL----GAE-QC--INYHEEDFLLAIS--TPV 216 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE-CHHHHHHHHHH----TCS-EE--EETTTSCHHHHCC--SCE
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEe-ccchHHHHHHc----CCC-EE--EeCCCcchhhhhc--cCC
Confidence 4456788999986 54 678888888764 35888887 55557777653 111 11 1222211 11111 368
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|+.. .. -. .+..+.+.|+++|.++...
T Consensus 217 D~v~d~-----~g---~~-~~~~~~~~l~~~G~iv~~g 245 (321)
T 3tqh_A 217 DAVIDL-----VG---GD-VGIQSIDCLKETGCIVSVP 245 (321)
T ss_dssp EEEEES-----SC---HH-HHHHHGGGEEEEEEEEECC
T ss_pred CEEEEC-----CC---cH-HHHHHHHhccCCCEEEEeC
Confidence 988842 21 12 2377889999999988754
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=83.29 E-value=3.3 Score=30.54 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=44.1
Q ss_pred cEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCC-cccCCCceEEeccCCCcccccC-CC-----CCcc
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNP-LYDASKMNVFPCDVTEDDILNQ-VP-----HNSV 151 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~-~~~~~~i~~~~~d~~~~~~~~~-~~-----~~~~ 151 (218)
+++|=.|++ |..+..++... ...+|++++-++..++...... ...+.++.++.+|+.+.+-... +. -+.+
T Consensus 3 k~vlItGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (250)
T 2cfc_A 3 RVAIVTGAS-SGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI 81 (250)
T ss_dssp CEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 466766654 44444444321 1258999998887665543322 2223468888999987532111 10 0357
Q ss_pred cEEEechh
Q psy1107 152 DIATLIFV 159 (218)
Q Consensus 152 D~i~~~~~ 159 (218)
|+++....
T Consensus 82 d~li~~Ag 89 (250)
T 2cfc_A 82 DVLVNNAG 89 (250)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 98887653
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=83.27 E-value=3 Score=32.94 Aligned_cols=98 Identities=11% Similarity=0.019 Sum_probs=60.1
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc----ccCCCCC
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI----LNQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~ 149 (218)
...++.+||-.|+ |.|..+..++... .+++++++.++..++.++.. +.. .. .|..+.+. .......
T Consensus 159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g~~-~~--~~~~~~~~~~~~~~~~~~~ 230 (354)
T 2j8z_A 159 NVQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKL----GAA-AG--FNYKKEDFSEATLKFTKGA 230 (354)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH----TCS-EE--EETTTSCHHHHHHHHTTTS
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----CCc-EE--EecCChHHHHHHHHHhcCC
Confidence 3456789999984 4666666666553 35899999999888888543 111 11 22222211 1112223
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+|+++.... . ..+..+.+.|+++|.+++...
T Consensus 231 ~~d~vi~~~G-------~--~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 231 GVNLILDCIG-------G--SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp CEEEEEESSC-------G--GGHHHHHHHEEEEEEEEECCC
T ss_pred CceEEEECCC-------c--hHHHHHHHhccCCCEEEEEec
Confidence 6899885421 1 145667889999999888653
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=83.12 E-value=4 Score=33.73 Aligned_cols=98 Identities=11% Similarity=0.061 Sum_probs=60.0
Q ss_pred CcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++|+=+||| ..+..+++.. .+..|+.+|.++..++.+.... .+..+.+|.++.+.+....-...|++++.
T Consensus 3 ~M~iiI~G~G--~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-----~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~ 75 (461)
T 4g65_A 3 AMKIIILGAG--QVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-----DLRVVNGHASHPDVLHEAGAQDADMLVAV 75 (461)
T ss_dssp CEEEEEECCS--HHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-----SCEEEESCTTCHHHHHHHTTTTCSEEEEC
T ss_pred cCEEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-----CcEEEEEcCCCHHHHHhcCCCcCCEEEEE
Confidence 4677777776 3444444332 2348999999999998876542 46788899988765443333468988762
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+.+...-+...+.+.+-+.-..+..-
T Consensus 76 -----t~~De~Nl~~~~~Ak~~~~~~~~iar~ 102 (461)
T 4g65_A 76 -----TNTDETNMAACQVAFTLFNTPNRIARI 102 (461)
T ss_dssp -----CSCHHHHHHHHHHHHHHHCCSSEEEEC
T ss_pred -----cCChHHHHHHHHHHHHhcCCccceeEe
Confidence 122333444455555555554455543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=82.96 E-value=3 Score=33.10 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=57.4
Q ss_pred CCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+||-+|+| .|..+.++++.. .+++++++.++..++.+.+.... . .++ |..+.+...... +.+|+|+..
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~lGa---~-~v~--~~~~~~~~~~~~-~~~D~vid~ 258 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNFGA---D-SFL--VSRDQEQMQAAA-GTLDGIIDT 258 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTSCC---S-EEE--ETTCHHHHHHTT-TCEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcCC---c-eEE--eccCHHHHHHhh-CCCCEEEEC
Confidence 67899999986 466677776653 35899999999888887633221 1 111 222111111111 368999854
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.... ..+..+.+.|+++|.++....
T Consensus 259 ~g~~--------~~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 259 VSAV--------HPLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp CSSC--------CCSHHHHHHEEEEEEEEECCC
T ss_pred CCcH--------HHHHHHHHHHhcCCEEEEEcc
Confidence 2211 123456678999999887653
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=82.89 E-value=2.7 Score=31.43 Aligned_cols=80 Identities=13% Similarity=0.022 Sum_probs=45.4
Q ss_pred CCcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC------CC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP------HN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~------~~ 149 (218)
.+++||=.|++ |.++..+++.. ...+|++++-++..++.........+.++.++.+|+.+..-... +. .+
T Consensus 13 ~~k~vlITGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 91 (266)
T 1xq1_A 13 KAKTVLVTGGT-KGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG 91 (266)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 34577766654 44444444321 12589999988776554433322223568888999887532111 10 14
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
.+|+++....
T Consensus 92 ~id~li~~Ag 101 (266)
T 1xq1_A 92 KLDILINNLG 101 (266)
T ss_dssp CCSEEEEECC
T ss_pred CCcEEEECCC
Confidence 6898887553
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=82.79 E-value=10 Score=35.78 Aligned_cols=82 Identities=17% Similarity=0.103 Sum_probs=53.3
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc-------cc----ccCCC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED-------DI----LNQVP 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------~~----~~~~~ 147 (218)
+..+++|+.||.|.++.-+...+-.-.+.++|+++.+.+..+.+.. ...++..|+... ++ ...++
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p----~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp 925 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP----GTTVFTEDCNVLLKLVMAGEVTNSLGQRLP 925 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT----TSEEECSCHHHHHHHHTTTCSBCSSCCBCC
T ss_pred CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC----CCcEeeccHHHHhHhhhccchhhhhhhhcc
Confidence 4578999999999999888776631258899999999988877642 233444443210 00 01122
Q ss_pred -CCcccEEEechhhcCCC
Q psy1107 148 -HNSVDIATLIFVLSAIH 164 (218)
Q Consensus 148 -~~~~D~i~~~~~l~~~~ 164 (218)
.+.+|+|+.......++
T Consensus 926 ~~~~vDvl~GGpPCQ~FS 943 (1330)
T 3av4_A 926 QKGDVEMLCGGPPCQGFS 943 (1330)
T ss_dssp CTTTCSEEEECCCCTTTC
T ss_pred ccCccceEEecCCCcccc
Confidence 24689999866555554
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=82.72 E-value=2.4 Score=31.93 Aligned_cols=79 Identities=11% Similarity=0.010 Sum_probs=44.6
Q ss_pred CCcEEEEecCCCchhHHHHh----hcCCccEEEEE-eCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----
Q psy1107 79 GEGVLLEVGCGVGNFIFPLL----SWSKICYIHAC-DISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP----- 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~----~~~~~~~v~~~-D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~----- 147 (218)
+..++|=.|++.| ++..++ +.+ .+|+.+ ..+....+.........+.++.++.+|+.+..-... +.
T Consensus 25 ~~k~vlITGas~g-IG~a~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (272)
T 4e3z_A 25 DTPVVLVTGGSRG-IGAAVCRLAARQG--WRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQ 101 (272)
T ss_dssp CSCEEEETTTTSH-HHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCC--CEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4557776766544 444443 434 467665 566665555444333334678899999987532111 00
Q ss_pred CCcccEEEechhh
Q psy1107 148 HNSVDIATLIFVL 160 (218)
Q Consensus 148 ~~~~D~i~~~~~l 160 (218)
-+..|+++.+..+
T Consensus 102 ~g~id~li~nAg~ 114 (272)
T 4e3z_A 102 FGRLDGLVNNAGI 114 (272)
T ss_dssp HSCCCEEEECCCC
T ss_pred CCCCCEEEECCCC
Confidence 0367988876543
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.67 E-value=9.9 Score=28.45 Aligned_cols=76 Identities=11% Similarity=0.030 Sum_probs=46.7
Q ss_pred CcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----CCc
Q psy1107 80 EGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----HNS 150 (218)
Q Consensus 80 ~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~~~ 150 (218)
++++|=.|++.| ..+..+++.+ .+|++++-++..++.+.+... .++.++.+|+.+.+-... +. -+.
T Consensus 6 ~k~vlITGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (263)
T 2a4k_A 6 GKTILVTGAASGIGRAALDLFAREG--ASLVAVDREERLLAEAVAALE---AEAIAVVADVSDPKAVEAVFAEALEEFGR 80 (263)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTCC---SSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc---CceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 457777776544 2333344444 589999998877766655432 467888999987532111 10 135
Q ss_pred ccEEEechhh
Q psy1107 151 VDIATLIFVL 160 (218)
Q Consensus 151 ~D~i~~~~~l 160 (218)
.|+++.+..+
T Consensus 81 iD~lvnnAg~ 90 (263)
T 2a4k_A 81 LHGVAHFAGV 90 (263)
T ss_dssp CCEEEEGGGG
T ss_pred CcEEEECCCC
Confidence 7999886644
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=82.65 E-value=1.6 Score=32.70 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=46.1
Q ss_pred CCcEEEEecCCCchhHHHH----hhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC------
Q psy1107 79 GEGVLLEVGCGVGNFIFPL----LSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP------ 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~----~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~------ 147 (218)
.++++|=.|++.| .+..+ ++.+ .+|++++-++..++.........+.++.++.+|+.+.+-... +.
T Consensus 8 ~~k~vlVTGas~g-iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (260)
T 2ae2_A 8 EGCTALVTGGSRG-IGYGIVEELASLG--ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF 84 (260)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567887776544 44343 4444 589999988876654433222223468888999987531111 10
Q ss_pred CCcccEEEechh
Q psy1107 148 HNSVDIATLIFV 159 (218)
Q Consensus 148 ~~~~D~i~~~~~ 159 (218)
.+..|+++.+..
T Consensus 85 ~g~id~lv~~Ag 96 (260)
T 2ae2_A 85 HGKLNILVNNAG 96 (260)
T ss_dssp TTCCCEEEECCC
T ss_pred CCCCCEEEECCC
Confidence 146899888654
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=82.65 E-value=1.4 Score=35.05 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=55.9
Q ss_pred CcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCH---HHHHHHHhCCcccCCCceEEeccCCCcccccCC--CCCcccE
Q psy1107 80 EGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISP---RAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV--PHNSVDI 153 (218)
Q Consensus 80 ~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~---~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~--~~~~~D~ 153 (218)
+.+||-+|+| .|..+..++... .++|++++.++ ...+.++.. + .... | .+ ++...+ ....+|+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~~----g--a~~v--~-~~-~~~~~~~~~~~~~d~ 249 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEET----K--TNYY--N-SS-NGYDKLKDSVGKFDV 249 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHHH----T--CEEE--E-CT-TCSHHHHHHHCCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHHh----C--Ccee--c-hH-HHHHHHHHhCCCCCE
Confidence 7899999984 355566666543 25899999987 777777643 1 1111 2 21 111110 1146899
Q ss_pred EEechhhcCCCcchHHHHH-HHHHHhccCCeEEEEEec
Q psy1107 154 ATLIFVLSAIHPNKFSTVV-KNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l-~~~~~~Lk~gG~li~~~~ 190 (218)
|+.... .+ ..+ ..+.+.|+++|.+++...
T Consensus 250 vid~~g---~~-----~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 250 IIDATG---AD-----VNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp EEECCC---CC-----THHHHHHGGGEEEEEEEEECSC
T ss_pred EEECCC---Ch-----HHHHHHHHHHHhcCCEEEEEec
Confidence 985321 11 245 778899999999888653
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.61 E-value=1.9 Score=32.67 Aligned_cols=77 Identities=13% Similarity=0.015 Sum_probs=44.4
Q ss_pred CcEEEEecCCCchhHHHH----hhcCCccEEEEEeCCHHHHHHHHhCC---cccCCCceEEeccCCCcccccC-CC----
Q psy1107 80 EGVLLEVGCGVGNFIFPL----LSWSKICYIHACDISPRAVNFFKLNP---LYDASKMNVFPCDVTEDDILNQ-VP---- 147 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~----~~~~~~~~v~~~D~s~~~~~~~~~~~---~~~~~~i~~~~~d~~~~~~~~~-~~---- 147 (218)
++++|=.|++. ..+..+ ++.+ .+|++++-++..++.+.... ...+.++.++.+|+.+.+-... +.
T Consensus 6 ~k~vlVTGas~-gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (278)
T 1spx_A 6 EKVAIITGSSN-GIGRATAVLFAREG--AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 82 (278)
T ss_dssp TCEEEETTTTS-HHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence 45677666654 444444 3444 58999998887665543322 1122467888999987532111 11
Q ss_pred -CCcccEEEechh
Q psy1107 148 -HNSVDIATLIFV 159 (218)
Q Consensus 148 -~~~~D~i~~~~~ 159 (218)
-+..|+++.+..
T Consensus 83 ~~g~id~lv~~Ag 95 (278)
T 1spx_A 83 KFGKLDILVNNAG 95 (278)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 136898887653
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=82.35 E-value=1.9 Score=32.12 Aligned_cols=80 Identities=14% Similarity=0.080 Sum_probs=46.0
Q ss_pred CCcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----CCc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----HNS 150 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~~~ 150 (218)
.++++|=.|++ |.++..++... ...+|++++.++...+.........+.++.++.+|+.+.+-... +. .+.
T Consensus 12 ~~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (260)
T 3awd_A 12 DNRVAIVTGGA-QNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGR 90 (260)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 45678877765 44444444321 12589999988766554433222224578899999987532111 11 135
Q ss_pred ccEEEechh
Q psy1107 151 VDIATLIFV 159 (218)
Q Consensus 151 ~D~i~~~~~ 159 (218)
+|+++....
T Consensus 91 id~vi~~Ag 99 (260)
T 3awd_A 91 VDILVACAG 99 (260)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 798887654
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.24 E-value=1.9 Score=32.61 Aligned_cols=80 Identities=10% Similarity=0.045 Sum_probs=47.3
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C------CC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V------PH 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~------~~ 148 (218)
.++++|=.|++.| ..+..+++.+ .+|++++-++..++.+.......+.++.++.+|+.+.+-... + -.
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 97 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLG--ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD 97 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3567887776544 2233334444 589999998876655433322224568889999987532111 0 01
Q ss_pred CcccEEEechhh
Q psy1107 149 NSVDIATLIFVL 160 (218)
Q Consensus 149 ~~~D~i~~~~~l 160 (218)
+..|+++.+...
T Consensus 98 g~id~lv~nAg~ 109 (273)
T 1ae1_A 98 GKLNILVNNAGV 109 (273)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 468998886543
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=81.46 E-value=1.4 Score=33.97 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=30.9
Q ss_pred CcccEEEechhhc--CCC-c--ch----HHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 149 NSVDIATLIFVLS--AIH-P--NK----FSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 149 ~~~D~i~~~~~l~--~~~-~--~~----~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+++|+|++.+... +.. . .| ...+++.+..+|+|||.+++-.|+..|
T Consensus 205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaD 259 (320)
T 2hwk_A 205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYAD 259 (320)
T ss_dssp CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCS
T ss_pred CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 5799999965322 111 1 11 112456678999999999999998884
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=81.20 E-value=18 Score=28.78 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=57.9
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...+||.++.+.|.++..++... ++.+.-|..+...++.+...++ ..+.+... . ... ...+|+|+
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~~----~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~-----~~~-~~~~~~v~ 105 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEHK----PYSIGDSYISELATRENLRLNGIDESSVKFLDS--T-----ADY-PQQPGVVL 105 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGGC----CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--T-----SCC-CSSCSEEE
T ss_pred CCCCEEEECCCCCHHHHhhccCC----ceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--c-----ccc-ccCCCEEE
Confidence 44689999999999987776543 2334334544444444433322 12444322 1 122 23789888
Q ss_pred echhhcCCCc--chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHP--NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~--~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
. .+|+ +.....+..+...|.+|+.+++..
T Consensus 106 ~-----~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g 136 (375)
T 4dcm_A 106 I-----KVPKTLALLEQQLRALRKVVTSDTRIIAGA 136 (375)
T ss_dssp E-----ECCSCHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred E-----EcCCCHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence 5 3443 456677788889999999998765
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=80.73 E-value=0.92 Score=34.34 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=32.7
Q ss_pred eEEeccCCCcccccCCCCCcccEEEechhhcCC--------Cc----chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 131 NVFPCDVTEDDILNQVPHNSVDIATLIFVLSAI--------HP----NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 131 ~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~--------~~----~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.++++|..+. ...++.+++|+|++.-....- .. +.....+..+.++|+|+|.+++..
T Consensus 6 ~l~~gD~~~~--l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 6 KIHQMNCFDF--LDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SEEECCHHHH--HHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHH--HHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3455554331 123445578888774322111 00 134567788899999999988863
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=80.50 E-value=3.3 Score=33.84 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=61.1
Q ss_pred hcCCCcEEEEecC-C-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC--------------
Q psy1107 76 QDVGEGVLLEVGC-G-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE-------------- 139 (218)
Q Consensus 76 ~~~~~~~vLDiGc-G-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~-------------- 139 (218)
...++.+||=.|+ | .|..+..+++.. .+++++++.++..++.+++.-.. .-+.....|+..
T Consensus 217 ~~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~~lGa~--~~i~~~~~~~~~~~~~~~~~~~~~~~ 293 (447)
T 4a0s_A 217 QMKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVRALGCD--LVINRAELGITDDIADDPRRVVETGR 293 (447)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCC--CEEEHHHHTCCTTGGGCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCC--EEEecccccccccccccccccchhhh
Confidence 3467889999997 3 567777777653 36899999999999988764110 001111111100
Q ss_pred ---cccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 140 ---DDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 140 ---~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..+.... ...+|+|+.. .. . ..+..+.+.|+++|.+++..
T Consensus 294 ~~~~~v~~~~-g~g~Dvvid~-----~G--~--~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 294 KLAKLVVEKA-GREPDIVFEH-----TG--R--VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHH-SSCCSEEEEC-----SC--H--HHHHHHHHHSCTTCEEEESC
T ss_pred HHHHHHHHHh-CCCceEEEEC-----CC--c--hHHHHHHHHHhcCCEEEEEe
Confidence 0000001 2368998853 21 1 35677888999999998865
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=80.06 E-value=2.4 Score=33.02 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=49.1
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccC-C-----C
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQ-V-----P 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~-~-----~ 147 (218)
.+.+||=.|++.| .++..+++.+ .+|++++.++..++.+.......+ .++.++.+|+.+..-... + .
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G--~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQG--CKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 3567888887655 2334444444 589999999887666554433222 278889999988532111 0 0
Q ss_pred CCcccEEEechhh
Q psy1107 148 HNSVDIATLIFVL 160 (218)
Q Consensus 148 ~~~~D~i~~~~~l 160 (218)
.+..|+++.+..+
T Consensus 85 ~g~id~lv~nAg~ 97 (319)
T 3ioy_A 85 FGPVSILCNNAGV 97 (319)
T ss_dssp TCCEEEEEECCCC
T ss_pred CCCCCEEEECCCc
Confidence 1368999886643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 218 | ||||
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 1e-20 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 1e-13 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 5e-09 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 9e-09 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 4e-07 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 4e-07 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 3e-05 | |
| d1af7a2 | 193 | c.66.1.8 (A:92-284) Chemotaxis receptor methyltran | 3e-05 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 4e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 5e-05 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 5e-05 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 2e-04 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 2e-04 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 2e-04 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 5e-04 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.002 |
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.9 bits (209), Expect = 1e-20
Identities = 31/208 (14%), Positives = 53/208 (25%), Gaps = 44/208 (21%)
Query: 43 NKKKYWDLFYKRNETKFFKDR---NWTVNEFHEFVNQDVGEGV-LLEVGCGVGNFIFPLL 98
+ Y Y W + + G L+++G G ++ LL
Sbjct: 14 EPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPT--VYQLL 71
Query: 99 SWSKICY-IHACDISPRAVNFF-----KLNPLYDASKM---------------------- 130
S I D + ++ S
Sbjct: 72 SACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131
Query: 131 ----NVFPCDVTEDDILNQVP--HNSVDIATLIFVLSAIHPN--KFSTVVKNLFIMLKSG 182
V P DV + L D F L A+ P+ F + ++ +L+ G
Sbjct: 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG 191
Query: 183 GIILFRDY--GLHDMAQMRFKPGHKISE 208
G +L +A +SE
Sbjct: 192 GHLLLIGALEESWYLAGEARLTVVPVSE 219
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.5 bits (158), Expect = 1e-13
Identities = 27/205 (13%), Positives = 57/205 (27%), Gaps = 41/205 (20%)
Query: 43 NKKKYWDLFYKRNETKFFKD--RNWTVNEFHEFVNQDVGEG-VLLEVGCGVGNFIFPLLS 99
+ Y +Y + + + + + H+ +G L+++G G I+ +L+
Sbjct: 12 LPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPT--IYQVLA 69
Query: 100 WSKIC-YIHACDISPRAVNFFKLNPLYD-------------------------------A 127
I D + R + + A
Sbjct: 70 ACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129
Query: 128 SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNK--FSTVVKNLFIMLKSGGII 185
+ V CDV + L D + + + + + NL +LK GG +
Sbjct: 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHL 189
Query: 186 LFRDYGLHD--MAQMRFKPGHKISE 208
+ M R + +
Sbjct: 190 VTTVTLRLPSYMVGKREFSCVALEK 214
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.2 bits (127), Expect = 5e-09
Identities = 27/197 (13%), Positives = 61/197 (30%), Gaps = 20/197 (10%)
Query: 9 NSVVAPILTDDLNKNLERQNSRLVSKHVAEEIEQNK--KKYWDLFYKRNETKFFKDRNWT 66
N ++ I + +LE + + + + + K K F + +
Sbjct: 141 NKMIREIPRQRIIDHLETIDK--IPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSN--YV 196
Query: 67 VNEF-HEFVNQ-----DVGEG-VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF- 118
E F++ + +G +++G GVGN + C+I A +
Sbjct: 197 YGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLT 256
Query: 119 ------FKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVV 172
K ++N + + + N + +I V + + + V
Sbjct: 257 ILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKV 316
Query: 173 KNLFIMLKSGGIILFRD 189
+ + K G I+
Sbjct: 317 EKILQTAKVGCKIISLK 333
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (124), Expect = 9e-09
Identities = 16/110 (14%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVF-----PCD 136
+ +++G GVG + + + + + + + + + + M +
Sbjct: 154 LFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT 213
Query: 137 VTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186
+ D L++ + ++IFV + + +K F +K GG I+
Sbjct: 214 LERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 263
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.2 bits (111), Expect = 4e-07
Identities = 27/183 (14%), Positives = 62/183 (33%), Gaps = 20/183 (10%)
Query: 46 KYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICY 105
+ W L+ ++ + + W + + V L+V CG G L+ +
Sbjct: 28 RVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRV-----LDVACGTGVDSIMLV--EEGFS 80
Query: 106 IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPHNSVDIATLIF--- 158
+ + D S + + + + + E + L + + D +
Sbjct: 81 VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSF 140
Query: 159 ---VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQD 215
S ++ +KN+ M++ GG+++ + P K N+Y + D
Sbjct: 141 AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGK---NIYYKSD 197
Query: 216 KTR 218
T+
Sbjct: 198 LTK 200
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 46.5 bits (109), Expect = 4e-07
Identities = 23/162 (14%), Positives = 39/162 (24%), Gaps = 9/162 (5%)
Query: 54 RNETKFFKDRNWT--VNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDI 111
R+E F + T ++ + V G L++GCG G L + +
Sbjct: 4 RDENYFTEKYGLTRTHSDVLAAA-KVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNP 62
Query: 112 SPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTV 171
+ A + T D V+ + +
Sbjct: 63 ASMANLERIKAAEGLDNLQTDLVDLNTLT------FDGEYDFILSTVVMMFLEAQTIPGL 116
Query: 172 VKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMR 213
+ N+ K GG L E R
Sbjct: 117 IANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRR 158
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 41.8 bits (97), Expect = 3e-05
Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 18/147 (12%)
Query: 45 KKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLS-WSKI 103
K DL+Y + F + W + + +++ GCG G L+ +
Sbjct: 3 KNTRDLYYNDDYVSFLVNTVWKITK----------PVHIVDYGCGYGYLGLVLMPLLPEG 52
Query: 104 CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAI 163
D + + ++ + + E D ++ DIA L +
Sbjct: 53 SKYTGIDSGETLLAEA-----RELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL--L 105
Query: 164 HPNKFSTVVKNLFIMLKSGGIILFRDY 190
H T+++ + +K GG I+ +
Sbjct: 106 HMTTPETMLQKMIHSVKKGGKIICFEP 132
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 41.0 bits (95), Expect = 3e-05
Identities = 17/169 (10%), Positives = 36/169 (21%), Gaps = 38/169 (22%)
Query: 55 NETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSW--------SKICYI 106
N T FF++ + E + GE + G + + +
Sbjct: 1 NLTAFFREAH-HFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKV 59
Query: 107 HACDISPRAVNFFKLNPLYDASKMNVFP-----------------------------CDV 137
A DI + + + + P
Sbjct: 60 FASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSS 119
Query: 138 TEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186
D V+ +++ +LK G++
Sbjct: 120 VNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLF 168
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 41.2 bits (95), Expect = 4e-05
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 7/118 (5%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+L+V G G+ + + A D++ + + + + + E
Sbjct: 19 VLDVATGGGHVANAFA--PFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 76
Query: 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRF 200
+ V H ++ V + +LK GG +L D +
Sbjct: 77 FTDERFHIVTCRIAAH-----HFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDV 129
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 40.9 bits (94), Expect = 5e-05
Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 10/143 (6%)
Query: 46 KYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICY 105
+Y+D Y+R + + ++ F E ++V +L++ CG G
Sbjct: 10 EYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRR--VLDLACGTGIPTLE-------LA 60
Query: 106 IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF-VLSAIH 164
++ ++ L +K + + D+L N D T+ F +
Sbjct: 61 ERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFD 120
Query: 165 PNKFSTVVKNLFIMLKSGGIILF 187
+ + LK GG+ +
Sbjct: 121 EEDLRKLFSKVAEALKPGGVFIT 143
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 40.7 bits (94), Expect = 5e-05
Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 7/118 (5%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+L++G G G+ + D + ++ + K
Sbjct: 20 VLDIGAGAGHTALAFS--PYVQECIGVDATK---EMVEVASSFAQEKGVENVRFQQGTAE 74
Query: 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRF 200
P +S DI T + H + V+ + +LK G L D+ + +
Sbjct: 75 SLPFPDDSFDIITCRYAAH--HFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDE 130
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 39.2 bits (90), Expect = 2e-04
Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 6/113 (5%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+L++G G G + D+S K +D
Sbjct: 37 ILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEE---LGVSERVHFIHNDA 92
Query: 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195
V + D+A + F+ + L LK GGI+L + +
Sbjct: 93 AGYVANEKCDVAACVGAT--WIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQL 143
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 38.3 bits (88), Expect = 2e-04
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 9/118 (7%)
Query: 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD 141
V ++VGCG G ++ ++A D +P A++ ++N NV + D
Sbjct: 36 VAVDVGCGTGGVTLE--LAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTL--MEGDA 91
Query: 142 ILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMR 199
+DIA + + +++ + LK GG I+ L +
Sbjct: 92 PEALCKIPDIDIAVVGGSGGELQE-----ILRIIKDKLKPGGRIIVTAILLETKFEAM 144
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 38.5 bits (89), Expect = 2e-04
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 6/105 (5%)
Query: 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD 141
+L +G G + L I+A + S + L + + + D
Sbjct: 59 RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEK-----LLELVRERNNIIPLLFDA 113
Query: 142 ILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186
V+ LI+ N+ + N LK G ++
Sbjct: 114 SKPWKYSGIVEKVDLIY-QDIAQKNQIEILKANAEFFLKEKGEVV 157
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 37.6 bits (86), Expect = 5e-04
Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 17/123 (13%)
Query: 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCD 136
D +L++GCG G + D+S A+ +
Sbjct: 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRL 141
Query: 137 VTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196
D S+D I+ + L ++K GG ++ G +
Sbjct: 142 PFSD--------TSMDAIIRIYAPCKA---------EELARVVKPGGWVITATPGPRHLM 184
Query: 197 QMR 199
+++
Sbjct: 185 ELK 187
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 35.5 bits (81), Expect = 0.002
Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 10/122 (8%)
Query: 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL 143
L +G G + + ++A + +PR + + D
Sbjct: 79 LYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDA-----CAERENIIPILGDANK 133
Query: 144 NQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL----FRDYGLHDMAQMR 199
Q N V+ +I+ A ++KN LK GG + R + +
Sbjct: 134 PQEYANIVEKVDVIYEDVAQPNQA-EILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEI 192
Query: 200 FK 201
FK
Sbjct: 193 FK 194
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 218 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.86 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.86 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.85 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.85 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.83 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.83 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.82 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.82 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.8 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.79 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.79 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.78 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.78 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.78 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.78 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.78 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.76 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.76 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.75 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.73 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.72 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.72 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.7 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.69 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.68 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.68 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.67 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.67 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.67 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.67 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.67 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.66 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.65 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.65 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.64 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.61 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.61 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.61 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.6 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.57 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.54 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.52 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.51 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.49 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.49 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.48 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.48 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.48 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.47 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.46 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.45 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.41 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.39 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.38 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.37 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.34 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.34 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.34 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.32 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.31 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.27 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.27 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.26 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.24 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.24 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.23 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.2 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.19 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.19 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 99.17 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.13 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.12 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.1 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.04 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.98 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.92 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.91 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.88 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.85 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.83 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.82 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.8 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.77 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.77 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.75 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.72 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.66 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.64 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.64 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.64 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.63 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.57 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.56 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.47 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.34 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.19 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.18 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.11 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.97 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.66 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.27 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.0 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.92 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.78 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.77 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.75 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.74 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.74 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.71 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.69 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.58 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.47 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.25 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.99 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.96 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 95.95 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.92 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.91 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.9 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.83 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.81 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.72 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.58 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.52 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.48 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.47 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.38 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 95.35 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.15 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.78 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 94.54 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.44 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.1 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.08 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.89 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.7 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.65 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.2 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 92.53 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 92.5 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 92.38 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 91.98 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.8 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 91.75 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 90.95 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 90.66 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 90.11 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 89.99 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 88.89 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 88.72 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 88.36 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 88.27 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 88.11 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 87.9 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 87.86 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 87.81 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 87.73 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 87.68 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 87.44 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 87.34 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 87.14 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 87.06 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 87.04 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 86.95 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 86.88 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 86.52 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 86.16 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 86.01 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 86.0 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.66 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 85.02 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 84.59 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 84.58 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 84.11 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 83.7 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 83.16 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 82.48 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 80.39 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.86 E-value=1.3e-21 Score=148.00 Aligned_cols=112 Identities=16% Similarity=0.191 Sum_probs=98.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.|+++....+ .++.+++.|+.+ .++++++||+
T Consensus 12 ~~~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~----~~~~~~~fD~ 85 (234)
T d1xxla_ 12 AECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES----LPFPDDSFDI 85 (234)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB----CCSCTTCEEE
T ss_pred hCCCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccccccccccccccccc----ccccccccce
Confidence 567899999999999999999999876 489999999999999998866544 579999999977 5678889999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
|+|..+++|++ ++..+++++.++|||||.+++.++....
T Consensus 86 v~~~~~l~~~~--d~~~~l~~~~r~LkpgG~~~~~~~~~~~ 124 (234)
T d1xxla_ 86 ITCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPE 124 (234)
T ss_dssp EEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred eeeeceeeccc--CHHHHHHHHHHeeCCCcEEEEEEcCCCC
Confidence 99999999995 7889999999999999999998765443
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=7.4e-22 Score=148.09 Aligned_cols=108 Identities=20% Similarity=0.289 Sum_probs=94.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..+..+|||||||+|.++..+++.+ .+++|+|+|+.+++.|+++....+.++.+++.|+.+ .++++++||+|+|
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~~--~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~----l~~~~~~fD~I~~ 108 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK----LSFEDKTFDYVIF 108 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS----CCSCTTCEEEEEE
T ss_pred cCCCCEEEEECCCcchhhhhHhhhh--cccccccccccchhhhhhhhcccccccccccccccc----ccccCcCceEEEE
Confidence 4677899999999999999999865 589999999999999998765555678888888887 5677789999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
..+++|+++.++..+++++.++|||||.+++...
T Consensus 109 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 109 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 9999999877888999999999999999988664
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.85 E-value=1.9e-21 Score=146.48 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=95.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||||||+|.++..+++.+ .+++|+|+|+.+++.|+.+....+ .++.++++|+.+ .++++++||+
T Consensus 11 ~~l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~----l~~~~~~fD~ 84 (231)
T d1vl5a_ 11 AALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ----MPFTDERFHI 84 (231)
T ss_dssp HTCCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C----CCSCTTCEEE
T ss_pred cCCCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccccccccccccccccc----cccccccccc
Confidence 566788999999999999999999887 489999999999999988765444 689999999887 5677889999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
|+|..+++|++ ++..++.++.++|||||++++.++..
T Consensus 85 v~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 85 VTCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp EEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccccccccccC--CHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99999999995 78899999999999999999987554
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=8.2e-22 Score=147.90 Aligned_cols=110 Identities=19% Similarity=0.243 Sum_probs=94.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..+..+|||+|||+|.++..++..++ .+|+|+|+|+.+++.|++++...+ .++.|+++|+.+ ..++.++||+|+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~----~~~~~~~fD~I~ 132 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQD----FTPEPDSYDVIW 132 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGG----CCCCSSCEEEEE
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccc----cccccccccccc
Confidence 45668999999999999998876654 389999999999999998876544 577999999987 455677999999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+..+++|+++.+...++.++.++|+|||.+++.+..
T Consensus 133 ~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~ 168 (222)
T d2ex4a1 133 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM 168 (222)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cccccccchhhhhhhHHHHHHHhcCCcceEEEEEcc
Confidence 999999998667788999999999999999998743
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=3.5e-20 Score=139.55 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=110.4
Q ss_pred HhhHHHHHHHhhhccCCCc--ccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC
Q psy1107 45 KKYWDLFYKRNETKFFKDR--NWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 45 ~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~ 122 (218)
-+.|+..|.....+|..+. .++.+.+..+ ....++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.+++.
T Consensus 10 ~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~-l~~~~~~rvLd~GCG~G~~a~~LA~~G--~~V~gvD~S~~ai~~a~~~ 86 (229)
T d2bzga1 10 LEEWQDKWVNGKTAFHQEQGHQLLKKHLDTF-LKGKSGLRVFFPLCGKAVEMKWFADRG--HSVVGVEISELGIQEFFTE 86 (229)
T ss_dssp HHHHHHHHHHTCCTTCCTTCCHHHHHHHHHH-HTTCCSCEEEETTCTTCTHHHHHHHTT--CEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCccCCCCHHHHHHHHHh-cCCCCCCEEEEeCCCCcHHHHHHHhCC--CcEEEEeCCHHHHHHHHHH
Confidence 4679999988776664332 2222333333 345677899999999999999999987 5999999999999998865
Q ss_pred Ccc------------------cCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeE
Q psy1107 123 PLY------------------DASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGI 184 (218)
Q Consensus 123 ~~~------------------~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~ 184 (218)
... ...++.+.++|+.+. .....+.||+|+...+++++++++...++..+.++|||||.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l---~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~ 163 (229)
T d2bzga1 87 QNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL---PRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQ 163 (229)
T ss_dssp TTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG---GGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEE
T ss_pred hhccccccchhcccccceeeecCCcEEEEEcchhhc---cccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcce
Confidence 321 124788899988762 34556789999999999999999999999999999999999
Q ss_pred EEEEecCC
Q psy1107 185 ILFRDYGL 192 (218)
Q Consensus 185 li~~~~~~ 192 (218)
+++..+..
T Consensus 164 ~~l~~~~~ 171 (229)
T d2bzga1 164 YLLCVLSY 171 (229)
T ss_dssp EEEEEEEC
T ss_pred EEEEEccc
Confidence 88876543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.83 E-value=7.3e-21 Score=145.01 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=90.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|..+..+++.+ .+++|+|+|+.+++.|+++....+.++.+.++|+.+ .+++ ++||+|+|
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~----l~~~-~~fD~I~~ 111 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE----IAFK-NEFDAVTM 111 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG----CCCC-SCEEEEEE
T ss_pred CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhh----cccc-cccchHhh
Confidence 4456799999999999999999876 489999999999999999876666689999999987 3444 48999999
Q ss_pred c-hhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 I-FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~-~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
. .+++|++..+...+++++.++|||||++++..
T Consensus 112 ~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 6 47788876788899999999999999998843
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.82 E-value=2.2e-20 Score=144.89 Aligned_cols=112 Identities=16% Similarity=0.014 Sum_probs=96.4
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||||||+|..+..+++.. .++|+|+|+|+.+++.|+++....+ .++.+.++|+.+ .+++.++||
T Consensus 63 ~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~----l~~~~~sfD 137 (282)
T d2o57a1 63 GVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE----IPCEDNSYD 137 (282)
T ss_dssp TCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS----CSSCTTCEE
T ss_pred cCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccccccccc----ccccccccc
Confidence 345788999999999999999998764 3599999999999999998765433 579999999987 567788999
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+|++..+++|++ ++..++.++.++|||||.|++.++...
T Consensus 138 ~V~~~~~l~h~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~ 176 (282)
T d2o57a1 138 FIWSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMKE 176 (282)
T ss_dssp EEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred hhhccchhhhcc--CHHHHHHHHHHhcCCCcEEEEEEeecC
Confidence 999999999995 788999999999999999999875433
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.82 E-value=7.2e-20 Score=137.42 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=92.1
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
...++.+|||+|||+|..+..+++. .|..+++|+|+|+.+++.|+++....+ .++.+...|+.+ ++...+
T Consensus 36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~------~~~~~~ 109 (225)
T d1im8a_ 36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH------VEIKNA 109 (225)
T ss_dssp HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTT------CCCCSE
T ss_pred hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhc------cccccc
Confidence 4567889999999999999999875 367899999999999999998755443 355666666543 344578
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
|+|++..++++++++++..++++++++|||||.|++.+...
T Consensus 110 d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~ 150 (225)
T d1im8a_ 110 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 150 (225)
T ss_dssp EEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred eeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence 99999999999988899999999999999999999987554
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.80 E-value=2.3e-19 Score=132.03 Aligned_cols=107 Identities=18% Similarity=0.225 Sum_probs=91.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||||||+|..+..+++.+ .+++++|+|+.+++.++.+....+ .++.+...|+.. ..+ +++||+|++
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~----~~~-~~~fD~I~~ 101 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT----LTF-DGEYDFILS 101 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTT----CCC-CCCEEEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheeccc----ccc-cccccEEEE
Confidence 345699999999999999999887 489999999999999988765544 568888888876 232 458999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
..+++|+++.....+++.+.++|+|||++++..+.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99999999888899999999999999999987643
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.79 E-value=4.1e-19 Score=134.94 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=88.6
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++....+.++.++++|+.+. .+ .++||+|+|
T Consensus 35 ~~~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~----~~-~~~fD~i~~ 107 (246)
T d1y8ca_ 35 NLVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL----NI-NRKFDLITC 107 (246)
T ss_dssp TCCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC----CC-SCCEEEEEE
T ss_pred CCCCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccCccceeeccchhhh----cc-cccccccce
Confidence 34568999999999999999999874 899999999999999987666666899999999772 33 348999998
Q ss_pred c-hhhcCCC-cchHHHHHHHHHHhccCCeEEEEE
Q psy1107 157 I-FVLSAIH-PNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 157 ~-~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
. .+++|++ ++++..+++.++++|+|||.|++.
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 6 4677774 578889999999999999998874
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=8.1e-19 Score=132.88 Aligned_cols=101 Identities=15% Similarity=0.181 Sum_probs=85.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++.. ..++.+|+.+ .++++++||+|+
T Consensus 39 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~-----~~~~~~~~~~----l~~~~~~fD~ii 107 (246)
T d2avna1 39 YLKNPCRVLDLGGGTGKWSLFLQERG--FEVVLVDPSKEMLEVAREKGV-----KNVVEAKAED----LPFPSGAFEAVL 107 (246)
T ss_dssp HCCSCCEEEEETCTTCHHHHHHHTTT--CEEEEEESCHHHHHHHHHHTC-----SCEEECCTTS----CCSCTTCEEEEE
T ss_pred hcCCCCEEEEECCCCchhcccccccc--eEEEEeecccccccccccccc-----cccccccccc----ccccccccccee
Confidence 34567899999999999999998875 599999999999999998632 2356777776 467778999999
Q ss_pred ec-hhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LI-FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~-~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+. .+++|++ ++..+++++.++|||||++++..
T Consensus 108 ~~~~~~~~~~--d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 108 ALGDVLSYVE--NKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp ECSSHHHHCS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eecchhhhhh--hHHHHHHHHHhhcCcCcEEEEEE
Confidence 85 5889995 67889999999999999999865
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.78 E-value=4.1e-19 Score=137.50 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=93.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++...+ ..+|+|+|+|+.+++.|+++....+.++.|.+.|+.+ .+++ ++||+|
T Consensus 24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~----~~~~-~~fD~v 98 (281)
T d2gh1a1 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE----IELN-DKYDIA 98 (281)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTT----CCCS-SCEEEE
T ss_pred ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccc----cccc-CCceEE
Confidence 456788999999999999999988765 3689999999999999998876666689999999876 3444 479999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++..+++|++ ++..+++++.++|||||.+++.+
T Consensus 99 ~~~~~l~~~~--d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 99 ICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp EEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEehhhhcCC--CHHHHHHHHHHHcCcCcEEEEEE
Confidence 9999999995 78899999999999999999877
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=2.6e-19 Score=135.97 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=93.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||||||+|..+..+++..+ ++++|+|+|+.+++.++++....+ .++.|...|+.+ . .++++||
T Consensus 29 ~~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~----~-~~~~~fD 102 (245)
T d1nkva_ 29 LRMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG----Y-VANEKCD 102 (245)
T ss_dssp TCCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT----C-CCSSCEE
T ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh----c-cccCcee
Confidence 5567889999999999999999887654 699999999999999998765444 469999999876 2 4567899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|++..+++|++ ++..++.++.++|||||.+++.+.
T Consensus 103 ~v~~~~~~~~~~--d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 103 VAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp EEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred EEEEEehhhccC--CHHHHHHHHHHHcCcCcEEEEEec
Confidence 999999999995 778999999999999999999764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.78 E-value=2.9e-19 Score=131.06 Aligned_cols=111 Identities=13% Similarity=0.005 Sum_probs=91.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-------------CCCceEEeccCCCccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-------------ASKMNVFPCDVTEDDI 142 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-------------~~~i~~~~~d~~~~~~ 142 (218)
...++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.|+++.... ...+.++.+|+.+.
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l-- 92 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQG--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL-- 92 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS--
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHcC--CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccc--
Confidence 35678899999999999999999886 69999999999999999864321 24567777877662
Q ss_pred ccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 143 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.......||+|++..+++++++++...++..+.++|||||.+++..+.
T Consensus 93 -~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~ 140 (201)
T d1pjza_ 93 -TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE 140 (201)
T ss_dssp -THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred -ccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence 222335799999999999999888899999999999999998886644
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.78 E-value=6e-19 Score=134.58 Aligned_cols=108 Identities=16% Similarity=0.187 Sum_probs=92.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..+..+|||+|||+|..+..++..+.. +|+++|+|+.+++.|+++.... .++.|.+.|+.+ ..++.++||+|++
T Consensus 91 ~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~-~~~~~~~~d~~~----~~~~~~~fD~I~~ 164 (254)
T d1xtpa_ 91 GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGM-PVGKFILASMET----ATLPPNTYDLIVI 164 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGG----CCCCSSCEEEEEE
T ss_pred CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhcccccc-ccceeEEccccc----cccCCCccceEEe
Confidence 346679999999999999988866543 8999999999999999875432 468899999877 4556779999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
..+++|+++.+...+++++.++|+|||.+++.+.
T Consensus 165 ~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 165 QWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eccccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 9999999876778999999999999999999764
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=1.7e-18 Score=128.20 Aligned_cols=101 Identities=20% Similarity=0.286 Sum_probs=86.5
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...+..+|||||||+|.++..+. +++|+|+|+.+++.++++ ++.+++.|+.+ .++++++||+|+
T Consensus 33 ~~~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~------~~~~~~~d~~~----l~~~~~~fD~I~ 96 (208)
T d1vlma_ 33 CLLPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR------GVFVLKGTAEN----LPLKDESFDFAL 96 (208)
T ss_dssp HHCCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT------TCEEEECBTTB----CCSCTTCEEEEE
T ss_pred hhCCCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc------ccccccccccc----cccccccccccc
Confidence 33456789999999999987763 468999999999999875 58899999877 566778999999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+..+++|++ ++..++.++.++|+|||.+++.......
T Consensus 97 ~~~~l~h~~--d~~~~l~~~~~~L~pgG~l~i~~~~~~~ 133 (208)
T d1vlma_ 97 MVTTICFVD--DPERALKEAYRILKKGGYLIVGIVDRES 133 (208)
T ss_dssp EESCGGGSS--CHHHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred ccccccccc--ccccchhhhhhcCCCCceEEEEecCCcc
Confidence 999999995 7889999999999999999998865544
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.76 E-value=1e-18 Score=133.19 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=89.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|..+..++..+. .+|+|+|+|+.+++.|+.+..... .++.+.++|+... .....++||+|
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~---~~~~~~~fD~V 97 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR---HMDLGKEFDVI 97 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS---CCCCSSCEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhh---cccccccceEE
Confidence 56788999999999999999987754 489999999999999987754333 4788999998762 12235689999
Q ss_pred EechhhcCCC--cchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIH--PNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~--~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|.++++|+. .++...++..+.++|||||+|++...
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 9999999873 35678899999999999999988653
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=3.6e-18 Score=130.90 Aligned_cols=153 Identities=15% Similarity=0.177 Sum_probs=108.2
Q ss_pred HHHhh-hhHhhHHHHHHHhhhccCCCcccch---HHHHHHh-hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCC
Q psy1107 38 EEIEQ-NKKKYWDLFYKRNETKFFKDRNWTV---NEFHEFV-NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDIS 112 (218)
Q Consensus 38 ~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s 112 (218)
..|.+ ....||+.+|......+..+..|.. +.+.+.+ ....++.++||+|||+|..+...+.... .+|+++|+|
T Consensus 8 ~~~~~f~~~~Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S 86 (263)
T d2g72a1 8 SAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFL 86 (263)
T ss_dssp HHGGGCCHHHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSC
T ss_pred HHHhhcCHHHHHHHHhCcCcccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCC
Confidence 34444 5678999999776666656654433 4455544 3445678999999999988765554443 389999999
Q ss_pred HHHHHHHHhCCcccCCC-------------------------------ceEEeccCCCcccc--cCCCCCcccEEEechh
Q psy1107 113 PRAVNFFKLNPLYDASK-------------------------------MNVFPCDVTEDDIL--NQVPHNSVDIATLIFV 159 (218)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-------------------------------i~~~~~d~~~~~~~--~~~~~~~~D~i~~~~~ 159 (218)
+.+++.++++....+.. .....+|+...... ...+.++||+|++.++
T Consensus 87 ~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~ 166 (263)
T d2g72a1 87 EVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFC 166 (263)
T ss_dssp HHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESC
T ss_pred HHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHH
Confidence 99999998754322111 12445677654332 2344568999999999
Q ss_pred hcCCCc--chHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 160 LSAIHP--NKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 160 l~~~~~--~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
++++++ +++..+++++.++|||||.|++.+..
T Consensus 167 l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~ 200 (263)
T d2g72a1 167 LEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL 200 (263)
T ss_dssp HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred HHHHccCHHHHHHHHHHHHHHcCCCCEEEEeccc
Confidence 999974 46789999999999999999997743
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=7.7e-19 Score=134.07 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=102.3
Q ss_pred hHhhHHHHHHHhhhccCCC--cccchHHHHHHh-hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHH
Q psy1107 44 KKKYWDLFYKRNETKFFKD--RNWTVNEFHEFV-NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFK 120 (218)
Q Consensus 44 ~~~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~ 120 (218)
...||+.+|......+... ..|+.+.+.+++ ....++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|+
T Consensus 13 ~~~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~ 91 (257)
T d2a14a1 13 PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELE 91 (257)
T ss_dssp HHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHH
T ss_pred hHHHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHH
Confidence 4578887775543332111 233344444443 2345678999999999999877776542 38999999999999998
Q ss_pred hCCcccCCCc-------------------------------eEEeccCCCcccccCCCCCcccEEEechhhcCCCc--ch
Q psy1107 121 LNPLYDASKM-------------------------------NVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHP--NK 167 (218)
Q Consensus 121 ~~~~~~~~~i-------------------------------~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~--~~ 167 (218)
+++....... .....++.......+++.++||+|++.++++|++. ++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~ 171 (257)
T d2a14a1 92 KWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDA 171 (257)
T ss_dssp HHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHH
T ss_pred HHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHH
Confidence 8754322111 12222333333334567789999999999999863 57
Q ss_pred HHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 168 FSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 168 ~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+..+++++.++|||||.+++.++...
T Consensus 172 ~~~~l~~i~~~LkpGG~li~~~~~~~ 197 (257)
T d2a14a1 172 YRAALCNLASLLKPGGHLVTTVTLRL 197 (257)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred HHHHHHHHHhccCCCcEEEEEEeccc
Confidence 78899999999999999999886543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.73 E-value=1.7e-17 Score=124.36 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=85.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||||||+|.++..++..+ .+|+|+|+|+.+++.|+.+.. .++.+.+.|+.+ ..+ +++||+|++.
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~---~~~~~~~~~~~~----~~~-~~~fD~I~~~ 88 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK---DGITYIHSRFED----AQL-PRRYDNIVLT 88 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC---SCEEEEESCGGG----CCC-SSCEEEEEEE
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccc---cccccccccccc----ccc-cccccccccc
Confidence 467799999999999999998876 479999999999999997643 468888888765 233 4589999999
Q ss_pred hhhcCCCcchHHHHHHHHH-HhccCCeEEEEEec
Q psy1107 158 FVLSAIHPNKFSTVVKNLF-IMLKSGGIILFRDY 190 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~-~~Lk~gG~li~~~~ 190 (218)
.+++|++ ++..++.++. ++|+|||.+++...
T Consensus 89 ~vleh~~--d~~~~l~~i~~~~Lk~gG~l~i~~p 120 (225)
T d2p7ia1 89 HVLEHID--DPVALLKRINDDWLAEGGRLFLVCP 120 (225)
T ss_dssp SCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ceeEecC--CHHHHHHHHHHHhcCCCceEEEEeC
Confidence 9999995 7888899987 78999999999753
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.72 E-value=9.4e-18 Score=127.89 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=92.9
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...+..+|||||||+|.++..+++.+|..+++++|+ +.+++.++++....+ .++.+..+|+.+ ..+ .+||+
T Consensus 77 d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-----~~~-~~~D~ 149 (253)
T d1tw3a2 77 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-----PLP-RKADA 149 (253)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-----CCS-SCEEE
T ss_pred CCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh-----hcc-cchhh
Confidence 345668999999999999999999999999999998 667888887654433 579999999865 222 36999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
|++..++|++++++...+++++++.|||||.|++.+....
T Consensus 150 v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~ 189 (253)
T d1tw3a2 150 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDL 189 (253)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBC
T ss_pred eeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 9999999999877778999999999999999999886543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.8e-17 Score=127.34 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=87.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..+++.+|+..++|+|+|+.+++.|+++. .++.+.++|+.+ .++++++||+|++
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~----~~~~~~~~d~~~----l~~~~~sfD~v~~ 153 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHR----LPFSDTSMDAIIR 153 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTS----CSBCTTCEEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc----ccccceeeehhh----ccCCCCCEEEEee
Confidence 45678999999999999999999988889999999999999998753 478999999987 6778889999998
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
.+++++ +.++.++|||||.|++...+.+...
T Consensus 154 ~~~~~~---------~~e~~rvLkpgG~l~~~~p~~~~l~ 184 (268)
T d1p91a_ 154 IYAPCK---------AEELARVVKPGGWVITATPGPRHLM 184 (268)
T ss_dssp ESCCCC---------HHHHHHHEEEEEEEEEEEECTTTTH
T ss_pred cCCHHH---------HHHHHHHhCCCcEEEEEeeCCcchH
Confidence 766554 3568899999999999887655544
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=9e-17 Score=123.81 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=89.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||||||.|.++..+++..+ ++|+|+|+|+.+++.++++....+ ..+.+...|..+ + .++||
T Consensus 48 l~l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~------~-~~~fD 119 (280)
T d2fk8a1 48 LDLKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED------F-AEPVD 119 (280)
T ss_dssp SCCCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG------C-CCCCS
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh------h-ccchh
Confidence 4567899999999999999999887753 699999999999999998865544 345665555433 2 34899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.|++..+++|++..+...+++++.++|||||.+++.+.
T Consensus 120 ~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 120 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 99999999999877889999999999999999998653
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.69 E-value=1.1e-16 Score=117.09 Aligned_cols=108 Identities=20% Similarity=0.191 Sum_probs=87.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCCCccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
...++.+|||+|||+|.++..++..++ +++++|+|+.+++.++.++...+ .++.+..+|+.+ .+++++||
T Consensus 49 ~~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-----~~~~~~fD 121 (194)
T d1dusa_ 49 VVDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-----NVKDRKYN 121 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-----TCTTSCEE
T ss_pred CcCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-----hhccCCce
Confidence 456788999999999999999988775 89999999999999998755432 458888888754 34566899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+|++..++++.. +....+++.+.++|+|||.+++....
T Consensus 122 ~Ii~~~p~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 122 KIITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp EEEECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred EEEEcccEEecc-hhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 999987765542 44578899999999999998875533
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.68 E-value=2.3e-17 Score=125.13 Aligned_cols=109 Identities=13% Similarity=0.135 Sum_probs=87.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.+++.|+++++.++.++.+.+.|+.+ .++.++||+|
T Consensus 116 ~~~~~g~~VLDiGcGsG~l~i~aa~~g--~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-----~~~~~~fD~V 188 (254)
T d2nxca1 116 RHLRPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-----ALPFGPFDLL 188 (254)
T ss_dssp HHCCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-----HGGGCCEEEE
T ss_pred hhcCccCEEEEcccchhHHHHHHHhcC--CEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-----cccccccchh
Confidence 445788999999999999999888766 489999999999999999877766677888887644 2345689999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
+++... .....++..+.++|||||+|+++++...+.
T Consensus 189 ~ani~~-----~~l~~l~~~~~~~LkpGG~lilSgil~~~~ 224 (254)
T d2nxca1 189 VANLYA-----ELHAALAPRYREALVPGGRALLTGILKDRA 224 (254)
T ss_dssp EEECCH-----HHHHHHHHHHHHHEEEEEEEEEEEEEGGGH
T ss_pred hhcccc-----ccHHHHHHHHHHhcCCCcEEEEEecchhhH
Confidence 986332 356678899999999999999987544443
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.68 E-value=8.3e-17 Score=118.26 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=88.9
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
...|||||||+|..+..+|..+|+..++|+|+++.++..+..++...+ .|+.++++|+... ...++.+++|.|++.+
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l--~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL--TDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH--HHHCCTTSCCEEEEES
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhh--hcccCchhhhcccccc
Confidence 458999999999999999999999999999999999999988766555 6899999998752 2347788999999877
Q ss_pred hhcCCCcch------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIHPNK------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~~~~------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
...+..... ...+++.+.++|||||.|++..
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 665543211 1478999999999999998864
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.67 E-value=1.2e-16 Score=121.82 Aligned_cols=108 Identities=18% Similarity=0.195 Sum_probs=91.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.++++....+ .++.+...|+.. +.+. ++|+|
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-----~~p~-~~D~v 151 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-----PLPV-TADVV 151 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-----CCSC-CEEEE
T ss_pred CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-----cccc-cchhh
Confidence 35667999999999999999999999999999997 778888887654333 568888888754 3333 69999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
++..++|++++++...+++++++.|||||.|++.+..
T Consensus 152 ~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 152 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence 9999999998778889999999999999999998853
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=8.9e-17 Score=120.62 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=86.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||||||+|..+..+++..+ .+++++|+|+.+++.|+++....+.++.++..++... ...++.++||.|+.
T Consensus 51 ~~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~i~f 127 (229)
T d1zx0a1 51 SSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV--APTLPDGHFDGILY 127 (229)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH--GGGSCTTCEEEEEE
T ss_pred ccCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhccccccccccccccc--ccccccccccceee
Confidence 35678999999999999999987754 4899999999999999998776666677777765442 24566778999874
Q ss_pred -----chhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 -----IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 -----~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
...++|+ .+...+++.+.++|||||.|++.+
T Consensus 128 D~~~~~~~~~~~--~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 128 DTYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CCCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccccc--cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 4455555 477889999999999999998743
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=9.4e-17 Score=123.99 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=89.8
Q ss_pred ccchHHHHHHh---hhcCCCcEEEEecCCCchhHHHHhhc----CC--ccEEEEEeCCHHHHHHHHhCCcccC--CCceE
Q psy1107 64 NWTVNEFHEFV---NQDVGEGVLLEVGCGVGNFIFPLLSW----SK--ICYIHACDISPRAVNFFKLNPLYDA--SKMNV 132 (218)
Q Consensus 64 ~~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~~~~~----~~--~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~ 132 (218)
.|+.+.+..++ ....+..+|||||||+|.++..++.. ++ ...++++|+|+.+++.++++..... .++.+
T Consensus 22 ~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~ 101 (280)
T d1jqea_ 22 EFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKF 101 (280)
T ss_dssp HHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEE
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccc
Confidence 34444555554 23345568999999999998877653 22 3478999999999999988744322 23333
Q ss_pred --EeccCCCc--ccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 133 --FPCDVTED--DILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 133 --~~~d~~~~--~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
...++... ......+.++||+|++..+++|++ ++..+++.+.++|+|||.+++..+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~i~~~~~~ 164 (280)
T d1jqea_ 102 AWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVSGS 164 (280)
T ss_dssp EEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred cchhhhhhhhcchhcccCCCCceeEEEEccceecCC--CHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence 23322110 112345677999999999999995 788999999999999999998775543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=1.7e-16 Score=122.63 Aligned_cols=110 Identities=14% Similarity=0.101 Sum_probs=90.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||||||.|.++..+++..+ ++++|+++|+..++.+++++...+ ..+.+...|.. ..+++||
T Consensus 57 l~l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~-------~~~~~fD 128 (291)
T d1kpia_ 57 LNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE-------EFDEPVD 128 (291)
T ss_dssp TCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG-------GCCCCCS
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc-------ccccccc
Confidence 5678899999999999999999987764 699999999999999988765443 45666666542 2356899
Q ss_pred EEEechhhcCCCc-------chHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 153 IATLIFVLSAIHP-------NKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 153 ~i~~~~~l~~~~~-------~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
.|++..+++|+++ ..+..+++++.++|||||.+++.++..
T Consensus 129 ~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~ 175 (291)
T d1kpia_ 129 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 175 (291)
T ss_dssp EEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred eEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence 9999999999974 357899999999999999999976543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.67 E-value=9.1e-17 Score=116.79 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=87.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|.++..++..+ .+|+++|+++.+++.|+++++..+ .++.++++|+.+ ...+...||
T Consensus 29 l~~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~----~~~~~~~~D 102 (186)
T d1l3ia_ 29 AEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE----ALCKIPDID 102 (186)
T ss_dssp HCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH----HHTTSCCEE
T ss_pred cCCCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhh----cccccCCcC
Confidence 556788999999999999999998765 489999999999999999876655 589999998765 233445899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
.|++....+ ....+++.+.+.|||||.+++.....
T Consensus 103 ~v~~~~~~~-----~~~~~~~~~~~~LkpgG~lvi~~~~~ 137 (186)
T d1l3ia_ 103 IAVVGGSGG-----ELQEILRIIKDKLKPGGRIIVTAILL 137 (186)
T ss_dssp EEEESCCTT-----CHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred EEEEeCccc-----cchHHHHHHHHHhCcCCEEEEEeecc
Confidence 999875433 45678999999999999999876443
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=8e-17 Score=125.14 Aligned_cols=111 Identities=15% Similarity=0.224 Sum_probs=81.9
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC-----CceEEeccCCCcccccCCCCCc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS-----KMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
...+..+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.|+++...... ...+...++...+. ......+
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~g--~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 129 (292)
T d1xvaa_ 53 RQHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK-DVPAGDG 129 (292)
T ss_dssp HHTTCCEEEESSCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH-HSCCTTC
T ss_pred hhcCCCEEEEecCCCcHHHHHHHHcC--CeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc-ccCCCCC
Confidence 33456799999999999999999876 5899999999999999876433222 23344444433221 1123458
Q ss_pred ccEEEech-hhcCCCc-----chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 151 VDIATLIF-VLSAIHP-----NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 151 ~D~i~~~~-~l~~~~~-----~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
||+|+|.+ ++.|++. ++...+++++.++|||||.|++..
T Consensus 130 fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 130 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp EEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 99999865 7888863 357789999999999999998854
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.65 E-value=5.3e-16 Score=116.01 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=87.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....|+.+|||+|||+|..+..++...|+..|+|+|+|+.+++.++.++... .++..+..|..... ......+|++
T Consensus 70 l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~-~ni~~i~~d~~~~~---~~~~~~~~v~ 145 (230)
T d1g8sa_ 70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQ---EYANIVEKVD 145 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGG---GGTTTCCCEE
T ss_pred CCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh-cccceEEEeeccCc---ccccccceeE
Confidence 4567899999999999999999999888889999999999999999886543 46777777776632 3334456776
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++...+++. .+...++.++.+.|||||.+++..
T Consensus 146 ~i~~~~~~~--~~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 146 VIYEDVAQP--NQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp EEEECCCST--THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Eeeccccch--HHHHHHHHHHHHhcccCceEEEEe
Confidence 665556655 578889999999999999999875
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.65 E-value=5.1e-16 Score=119.60 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=92.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||||||.|..+..+++.. +++|+|+++|+..++.++++....+ .++.+...|..+ + +++||
T Consensus 58 l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~------~-~~~fD 129 (285)
T d1kpga_ 58 LGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ------F-DEPVD 129 (285)
T ss_dssp TTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG------C-CCCCS
T ss_pred cCCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc------c-ccccc
Confidence 567889999999999999999988876 3799999999999999988754333 678888888754 1 24899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.|++..+++|+...+...+++++.++|||||.+++.+..
T Consensus 130 ~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 130 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred ceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 999999999997677889999999999999999986654
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.64 E-value=1.1e-15 Score=112.15 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=87.5
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
...|||||||+|.++..+|+.+|+..++|+|+++.++..|..++...+ .|+.+..+|+... ...++..++|.|++.+
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l--~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL--TDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG--GGTSCTTCCSEEEEES
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHH--hhhccCCceehhcccc
Confidence 458999999999999999999999999999999999999988766544 6899999998763 3457788999998765
Q ss_pred hhcCCCcch------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIHPNK------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~~~~------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
...+..... ...++..+.++|||||.|++.+
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 433321111 2578999999999999998854
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=3.1e-16 Score=119.81 Aligned_cols=107 Identities=20% Similarity=0.211 Sum_probs=86.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...+.+|||+|||+|..++.++...|+.+++++|+|+.+++.|++++...+ .++.+++.|+.+ +++..+||+|+
T Consensus 106 ~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-----~~~~~~fDlIv 180 (274)
T d2b3ta1 106 PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-----ALAGQQFAMIV 180 (274)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-----GGTTCCEEEEE
T ss_pred cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-----ccCCCceeEEE
Confidence 355678999999999999999999999999999999999999999987666 479999999865 34456899999
Q ss_pred echhh-------------cCCCc----------chHHHHHHHHHHhccCCeEEEEE
Q psy1107 156 LIFVL-------------SAIHP----------NKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 156 ~~~~l-------------~~~~~----------~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
++-.. .+-|. +....++..+.++|+|||.+++-
T Consensus 181 sNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE 236 (274)
T d2b3ta1 181 SNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 236 (274)
T ss_dssp ECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence 95321 11110 12457888999999999998884
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=7.9e-16 Score=113.96 Aligned_cols=103 Identities=15% Similarity=0.068 Sum_probs=84.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|..+..+++. ++...|+++|+++.+++.++++....+ .++.+.+.|..+ .....++||
T Consensus 71 l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~----~~~~~~~fD 146 (213)
T d1dl5a1 71 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY----GVPEFSPYD 146 (213)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG----CCGGGCCEE
T ss_pred hhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHH----ccccccchh
Confidence 45788999999999999999999875 466799999999999999999876554 678888888765 233455899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++..++++++. .+.+.|||||.|++..
T Consensus 147 ~I~~~~~~~~~p~--------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 147 VIFVTVGVDEVPE--------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp EEEECSBBSCCCH--------HHHHHEEEEEEEEEEB
T ss_pred hhhhhccHHHhHH--------HHHHhcCCCcEEEEEE
Confidence 9999998888852 3567899999998854
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.61 E-value=1.1e-15 Score=112.78 Aligned_cols=110 Identities=15% Similarity=0.064 Sum_probs=84.4
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....|+.+|||+|||+|..+..+++..+..+|+|+|+|+.+++.+++++... .++.++..|........ .....+|+|
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~-~ni~~i~~d~~~~~~~~-~~~~~vd~v 129 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYS-GIVEKVDLI 129 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTT-TTCCCEEEE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc-CCceEEEeeccCccccc-cccceEEEE
Confidence 4567899999999999999999998877779999999999999998876543 58889988887743211 111245555
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
++ .+.+. .+...++.++.++|||||++++...
T Consensus 130 ~~--~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 130 YQ--DIAQK--NQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp EE--CCCST--THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Ee--cccCh--hhHHHHHHHHHHHhccCCeEEEEEE
Confidence 43 23333 5778899999999999999998763
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.60 E-value=1e-15 Score=116.16 Aligned_cols=104 Identities=18% Similarity=0.249 Sum_probs=88.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcc----cCCCceEEeccCCCcccccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLY----DASKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
....|+.+|||+|||+|.++..++.. +|..+++++|+++++++.|+++... ...++.+.+.|+.+ ..++++
T Consensus 92 l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~----~~~~~~ 167 (264)
T d1i9ga_ 92 GDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD----SELPDG 167 (264)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG----CCCCTT
T ss_pred hCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc----ccccCC
Confidence 66789999999999999999999987 7888999999999999999987543 23688999999876 567788
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+||.|++ +++ ++..++..+.++|||||.+++..
T Consensus 168 ~fDaV~l-----dlp--~P~~~l~~~~~~LkpGG~lv~~~ 200 (264)
T d1i9ga_ 168 SVDRAVL-----DML--APWEVLDAVSRLLVAGGVLMVYV 200 (264)
T ss_dssp CEEEEEE-----ESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CcceEEE-----ecC--CHHHHHHHHHhccCCCCEEEEEe
Confidence 9999986 454 45678899999999999998866
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.57 E-value=2.6e-15 Score=113.23 Aligned_cols=103 Identities=17% Similarity=0.081 Sum_probs=85.4
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCccc--CCCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYD--ASKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....|+.+|||+|||+|.++..+++. ++..+|+++|.++.+++.|+++.... ..++.+...|+.+ .+++.+|
T Consensus 81 l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~-----~~~~~~f 155 (250)
T d1yb2a1 81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-----FISDQMY 155 (250)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-----CCCSCCE
T ss_pred cCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeec-----cccccee
Confidence 55688999999999999999999876 67789999999999999999986543 3689999999865 3456689
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|.|++ +++ ++..++..+.++|||||.|++..
T Consensus 156 D~V~l-----d~p--~p~~~l~~~~~~LKpGG~lv~~~ 186 (250)
T d1yb2a1 156 DAVIA-----DIP--DPWNHVQKIASMMKPGSVATFYL 186 (250)
T ss_dssp EEEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEE
T ss_pred eeeee-----cCC--chHHHHHHHHHhcCCCceEEEEe
Confidence 99986 343 34568899999999999999864
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=8.9e-15 Score=108.91 Aligned_cols=103 Identities=17% Similarity=0.078 Sum_probs=82.2
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCccc------CCCceEEeccCCCcccccCCCC
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYD------ASKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~------~~~i~~~~~d~~~~~~~~~~~~ 148 (218)
...++.+|||+|||+|..+..+++. ++..+|+++|+++.+++.|+++.... ..++.+..+|... ...+.
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~----~~~~~ 148 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM----GYAEE 148 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG----CCGGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc----ccchh
Confidence 5678899999999999999888875 56679999999999999998875432 2467888888765 33345
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+||+|++..++.++| ..+.+.|||||+|++...
T Consensus 149 ~~fD~I~~~~~~~~ip--------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 149 APYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp CCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred hhhhhhhhhcchhhcC--------HHHHhhcCCCcEEEEEEc
Confidence 6899999998888775 235688999999998653
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.52 E-value=4e-14 Score=103.09 Aligned_cols=129 Identities=12% Similarity=0.147 Sum_probs=88.0
Q ss_pred hccCCCcccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhh----c----CCccEEEEEeCCHHHHHHHHhCCccc--
Q psy1107 57 TKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLS----W----SKICYIHACDISPRAVNFFKLNPLYD-- 126 (218)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~----~----~~~~~v~~~D~s~~~~~~~~~~~~~~-- 126 (218)
+.||++... ...+.+.+....++.+|+++|||+|.-...++. . ....+++|+|+|+.+++.|+...-..
T Consensus 3 T~FFRd~~~-f~~L~~~~~~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~ 81 (193)
T d1af7a2 3 TAFFREAHH-FPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSE 81 (193)
T ss_dssp CCTTTTTTH-HHHHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGG
T ss_pred CCCcCCcHH-HHHHHHHHhccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHH
Confidence 456666532 233444444456778999999999975444432 1 23458999999999999998542000
Q ss_pred ----------------C--------------CCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHH
Q psy1107 127 ----------------A--------------SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLF 176 (218)
Q Consensus 127 ----------------~--------------~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~ 176 (218)
. ..+.+...+.... ...+.++||+|+|..|+.+++++...++++.+.
T Consensus 82 ~~~~~~~~~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~ 158 (193)
T d1af7a2 82 LKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEK---QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFV 158 (193)
T ss_dssp GTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCS---SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHG
T ss_pred HhhhhHHHHhhceeecCCCccceeehHHHHHHHHHHhhhhcccc---ccCCCCCccEEEeehhHHhcCHHHHHHHHHHHH
Confidence 0 1122333333221 223346899999999999999888899999999
Q ss_pred HhccCCeEEEEEe
Q psy1107 177 IMLKSGGIILFRD 189 (218)
Q Consensus 177 ~~Lk~gG~li~~~ 189 (218)
+.|+|||+|++..
T Consensus 159 ~~L~pGG~L~lG~ 171 (193)
T d1af7a2 159 PLLKPDGLLFAGH 171 (193)
T ss_dssp GGEEEEEEEEECT
T ss_pred HHhCCCcEEEEec
Confidence 9999999999864
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.51 E-value=7e-14 Score=103.98 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=85.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....|+.+|||+|||+|..+..+++. ++..+|+++|+++.+++.++.++... .++..+..|....... ......+|+
T Consensus 69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~-~~~~~i~~d~~~~~~~-~~~~~~vD~ 146 (227)
T d1g8aa_ 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPEEY-RALVPKVDV 146 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGGGG-TTTCCCEEE
T ss_pred cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc-CCceEEEEECCCcccc-cccccceEE
Confidence 34678999999999999999999986 67789999999999999999875543 4677777777664432 233347888
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|++. +.+ ++....++..+.+.|||||.+++..+
T Consensus 147 i~~d--~~~--~~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 147 IFED--VAQ--PTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp EEEC--CCS--TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEE--ccc--cchHHHHHHHHHHhcccCCeEEEEEE
Confidence 8753 222 25778899999999999999998753
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=2e-14 Score=109.48 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=83.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....|+.+|||+|||+|.++..+++. +|..+++++|+++.+++.|++++...+ .++.+...|+.. .++...+
T Consensus 99 l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-----~~~~~~~ 173 (266)
T d1o54a_ 99 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-----GFDEKDV 173 (266)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-----CCSCCSE
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-----cccccce
Confidence 66789999999999999999999876 577899999999999999999876544 456666666533 4555678
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|.|+. +++ ++..+++.+.++|||||.|++..
T Consensus 174 D~V~~-----d~p--~p~~~l~~~~~~LKpGG~lv~~~ 204 (266)
T d1o54a_ 174 DALFL-----DVP--DPWNYIDKCWEALKGGGRFATVC 204 (266)
T ss_dssp EEEEE-----CCS--CGGGTHHHHHHHEEEEEEEEEEE
T ss_pred eeeEe-----cCC--CHHHHHHHHHhhcCCCCEEEEEe
Confidence 98874 454 55678999999999999999865
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=3.9e-14 Score=111.51 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=80.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc--CCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD--ASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+|||||||+|.++..+++.+.. +|+++|.|+ ++..+++..... ..++.++++|+.+ ..++..++|+|+
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~-~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~----l~~~~~~~D~i~ 110 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHGAK-HVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLED----VHLPFPKVDIII 110 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCS-EEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT----SCCSSSCEEEEE
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCC-EEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhh----ccCcccceeEEE
Confidence 46789999999999999988887753 999999986 455665543333 3578999999877 456677999999
Q ss_pred echhhcCCC-cchHHHHHHHHHHhccCCeEEE
Q psy1107 156 LIFVLSAIH-PNKFSTVVKNLFIMLKSGGIIL 186 (218)
Q Consensus 156 ~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li 186 (218)
+..+.+++. ......++....++|||||.++
T Consensus 111 se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 976665554 2467788888899999999876
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.48 E-value=5.3e-14 Score=104.32 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=80.4
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||||||+|.++..++... .+|+++|+++..++.|+++.... .++.++.+|.... ....++||.|
T Consensus 66 L~l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~-~nv~~~~~d~~~g----~~~~~pfD~I 138 (224)
T d1vbfa_ 66 LDLHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYY-NNIKLILGDGTLG----YEEEKPYDRV 138 (224)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTC-SSEEEEESCGGGC----CGGGCCEEEE
T ss_pred hhhcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcc-cccccccCchhhc----chhhhhHHHH
Confidence 456789999999999999999888876 49999999999999999875433 6899999987652 2224579999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++...+.++| ..+.+.|+|||+|++.-
T Consensus 139 iv~~a~~~ip--------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 139 VVWATAPTLL--------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp EESSBBSSCC--------HHHHHTEEEEEEEEEEE
T ss_pred Hhhcchhhhh--------HHHHHhcCCCCEEEEEE
Confidence 9988877775 23457899999998854
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=8.2e-14 Score=108.83 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=81.4
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-cCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-DASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||||||+|.++..+++.++ .+|+++|.|+.+...++..... ...++.++++|+.+ ...+..+||+|
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~----l~~~~~~~D~I 106 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEE----VHLPVEKVDVI 106 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTT----SCCSCSCEEEE
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHH----hcCccccceEE
Confidence 345788999999999999999998876 3999999999876544332222 23678999999887 45566799999
Q ss_pred EechhhcCCCc-chHHHHHHHHHHhccCCeEEEE
Q psy1107 155 TLIFVLSAIHP-NKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 155 ~~~~~l~~~~~-~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
++..+.+++.. ..+..++....++|+|||.++.
T Consensus 107 vse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 107 ISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 99766665543 3466777777899999998874
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=6.2e-14 Score=109.75 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=80.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc--CCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD--ASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+|||||||+|.++..+++.+.. +|+++|.|+.+ ..+++..... ..++.++++|+.+ ..++.+++|+|+
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~-~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~----~~~~~~~~D~iv 105 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAGAR-KVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEE----VELPVEKVDIII 105 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCS-EEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTT----CCCSSSCEEEEE
T ss_pred CCcCEEEEEecCCcHHHHHHHHhCCC-EEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHH----cccccceeEEEe
Confidence 36789999999999999999887753 89999999865 4444432222 3579999999887 456667899999
Q ss_pred echhhcCCCc-chHHHHHHHHHHhccCCeEEEE
Q psy1107 156 LIFVLSAIHP-NKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 156 ~~~~l~~~~~-~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
+..+.+++.. .....++..+.++|||||.++-
T Consensus 106 s~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 106 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 9766665543 4678899999999999998873
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=5.9e-14 Score=109.54 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=81.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCc------------ccCCCceEEeccCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPL------------YDASKMNVFPCDVTEDD 141 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~------------~~~~~i~~~~~d~~~~~ 141 (218)
....|+.+|||+|||+|.++..++.. +|..+|+++|+++.+++.|+++.+ ....++.+.+.|+.+..
T Consensus 94 l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~ 173 (324)
T d2b25a1 94 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 173 (324)
T ss_dssp HTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred hCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcc
Confidence 56789999999999999999999876 677899999999999999998643 22368899999987631
Q ss_pred cccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 142 ILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 142 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..++...||.|++ .+| ++..++..+.++|||||.|++..
T Consensus 174 --~~~~~~~fD~V~L-----D~p--~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 174 --EDIKSLTFDAVAL-----DML--NPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp ---------EEEEEE-----CSS--STTTTHHHHGGGEEEEEEEEEEE
T ss_pred --cccCCCCcceEee-----cCc--CHHHHHHHHHHhccCCCEEEEEe
Confidence 3455668999986 333 23457899999999999999855
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=3.8e-14 Score=111.43 Aligned_cols=110 Identities=10% Similarity=0.151 Sum_probs=83.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc----------cCCCceEEeccCCCccccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY----------DASKMNVFPCDVTEDDILN 144 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~----------~~~~i~~~~~d~~~~~~~~ 144 (218)
....++.+|||+|||+|..+..++...+..+++|+|+++.+++.|+..... ...++.+.++|+.+..+..
T Consensus 147 ~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~ 226 (328)
T d1nw3a_ 147 IKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE 226 (328)
T ss_dssp SCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHH
T ss_pred cCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccc
Confidence 446788999999999999999998876656899999999999999875332 2357999999998743211
Q ss_pred CCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 145 QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+ ...|+|++... .+. .+....+.++.+.|||||.+++..
T Consensus 227 ~~--~~advi~~~~~-~f~--~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 227 RI--ANTSVIFVNNF-AFG--PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HH--HHCSEEEECCT-TTC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cc--CcceEEEEcce-ecc--hHHHHHHHHHHHhCCCCcEEEEec
Confidence 11 13477877543 344 467788999999999999998854
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.45 E-value=1.6e-13 Score=103.23 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=85.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.....+|||||||+|.++..+++++|..+++.+|. +.+++.+. ...++.+..+|+.+ +.| ..|++++
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~-----~~~ri~~~~gd~~~-----~~p--~~D~~~l 145 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP-----PLSGIEHVGGDMFA-----SVP--QGDAMIL 145 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CCTTEEEEECCTTT-----CCC--CEEEEEE
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccC-----CCCCeEEecCCccc-----ccc--cceEEEE
Confidence 35568999999999999999999999999999998 44443221 12679999999865 333 3599999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
..++|++++++...+++++++.|+|||.|++.++.
T Consensus 146 ~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v 180 (244)
T d1fp1d2 146 KAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI 180 (244)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 99999999889999999999999999999998864
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=4.4e-13 Score=97.03 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=98.8
Q ss_pred chHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc-c
Q psy1107 66 TVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL-N 144 (218)
Q Consensus 66 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~ 144 (218)
+..++.+. ....++..+||++||+|..+..+++..|+++++|+|.++.+++.++.+....+.++.+++.++.+.... .
T Consensus 11 ll~evi~~-l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 11 MVREVIEF-LKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 89 (192)
T ss_dssp THHHHHHH-HCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHHh-hCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence 44444444 345678899999999999999999988889999999999999999998877777899999988764321 2
Q ss_pred CCCCCcccEEEechhhcCC-------CcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 145 QVPHNSVDIATLIFVLSAI-------HPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~-------~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
.+..+++|.|+....++.. ........+..+.++|+|||.+++..|.....
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Ed 147 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLED 147 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHH
T ss_pred HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHH
Confidence 3445689999874332110 11345678888999999999999999776554
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.39 E-value=3e-13 Score=99.61 Aligned_cols=102 Identities=22% Similarity=0.170 Sum_probs=83.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||||||+|..+..++.... .+|+++|.++..++.++++....+ .|+.++++|... .....++||.
T Consensus 74 L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~----g~~~~~pfD~ 148 (215)
T d1jg1a_ 74 ANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK----GFPPKAPYDV 148 (215)
T ss_dssp HTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG----CCGGGCCEEE
T ss_pred hccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECcccc----CCcccCccee
Confidence 5678899999999999999998887642 479999999999999999877655 789999999876 2233468999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++...+.++|. .+...|+|||++++.-
T Consensus 149 Iiv~~a~~~ip~--------~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 149 IIVTAGAPKIPE--------PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp EEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred EEeecccccCCH--------HHHHhcCCCCEEEEEE
Confidence 999888887752 2456799999998854
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.38 E-value=4.3e-13 Score=104.76 Aligned_cols=115 Identities=17% Similarity=0.086 Sum_probs=85.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++++..++ .++.+++.|+.+..........+||+
T Consensus 141 ~~~~~g~rVLDl~~gtG~~s~~~a~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~ 218 (318)
T d1wxxa2 141 MERFRGERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDL 218 (318)
T ss_dssp GGGCCEEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred HHHhCCCeeeccCCCCcHHHHHHHhcC--CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCE
Confidence 444578999999999999999887543 599999999999999999987666 57889999876532112223458999
Q ss_pred EEechhhcCCCc-------chHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 154 ATLIFVLSAIHP-------NKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 154 i~~~~~l~~~~~-------~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|++.-....... .....++..+.++|+|||.|++..-.
T Consensus 219 Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 219 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 998543221111 12446788899999999999987643
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.37 E-value=2.8e-13 Score=94.78 Aligned_cols=111 Identities=10% Similarity=0.145 Sum_probs=81.4
Q ss_pred HHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCC
Q psy1107 72 EFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 72 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
.++.+.-++.+|||+|||+|.+++.++.++.. +++++|.++.+++.+++++...+ .++.+++.|+... .....+
T Consensus 7 n~l~~~~~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~---l~~~~~ 82 (152)
T d2esra1 7 NMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA---IDCLTG 82 (152)
T ss_dssp HHHCSCCCSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH---HHHBCS
T ss_pred HHHHhhCCCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhccccccc---cccccc
Confidence 33344456889999999999999999888764 99999999999999999876554 4688889887652 223456
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHH--HhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLF--IMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~--~~Lk~gG~li~~~ 189 (218)
+||+|++.-... .......+..+. ++|+|+|.+++..
T Consensus 83 ~fDiIf~DPPy~---~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 83 RFDLVFLDPPYA---KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp CEEEEEECCSSH---HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ccceeEechhhc---cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 899999742111 123445666553 5799999988754
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=1.1e-12 Score=104.85 Aligned_cols=110 Identities=14% Similarity=0.152 Sum_probs=77.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc----------CCCceE-EeccCCCcccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD----------ASKMNV-FPCDVTEDDIL 143 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~----------~~~i~~-~~~d~~~~~~~ 143 (218)
....++.++||+|||.|..+..++...+..+++|+|+++.+++.|+.+.... .....+ ..+++......
T Consensus 212 l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~ 291 (406)
T d1u2za_ 212 CQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRV 291 (406)
T ss_dssp TTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHH
T ss_pred hCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccc
Confidence 4568889999999999999999998866558999999999999998764321 122232 23333332110
Q ss_pred -cCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 144 -NQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 144 -~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..+ ..+|+|++... .+. .+....+.++.+.|||||.+++.+
T Consensus 292 d~~~--~~adVV~inn~-~f~--~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 292 AELI--PQCDVILVNNF-LFD--EDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HHHG--GGCSEEEECCT-TCC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccc--ccceEEEEecc-cCc--hHHHHHHHHHHHhcCCCcEEEEec
Confidence 111 24678877542 233 477889999999999999998865
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.34 E-value=1.9e-12 Score=98.10 Aligned_cols=106 Identities=15% Similarity=0.291 Sum_probs=83.1
Q ss_pred HhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCc
Q psy1107 73 FVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 73 ~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
+.....++.+|||+|||+|.++..++..+. ++|+++|+|+.+++.+++++..++ .++.++++|+.+. .+.+.
T Consensus 101 i~~~~~~g~~VlD~~aG~G~~~l~~a~~~~-~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~-----~~~~~ 174 (260)
T d2frna1 101 MAKVAKPDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF-----PGENI 174 (260)
T ss_dssp HHHHCCTTCEEEETTCTTTTTHHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC-----CCCSC
T ss_pred HHhhcCCccEEEECcceEcHHHHHHHHhCC-cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHh-----ccCCC
Confidence 334557889999999999999999998753 599999999999999999877655 4689999998762 23457
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
||.|++.. | .....++..+.++|++||.+.+.++
T Consensus 175 ~D~Ii~~~-----p-~~~~~~l~~a~~~l~~gG~lh~~~~ 208 (260)
T d2frna1 175 ADRILMGY-----V-VRTHEFIPKALSIAKDGAIIHYHNT 208 (260)
T ss_dssp EEEEEECC-----C-SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred CCEEEECC-----C-CchHHHHHHHHhhcCCCCEEEEEec
Confidence 99988642 2 2334577888999999999877553
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.34 E-value=5.5e-13 Score=104.48 Aligned_cols=114 Identities=20% Similarity=0.123 Sum_probs=85.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.+++++..++ .++++.+.|+.+..........+||+|
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 46789999999999999999988765 489999999999999999977665 468898998765321122234589999
Q ss_pred EechhhcCCCc-------chHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 155 TLIFVLSAIHP-------NKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 155 ~~~~~l~~~~~-------~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
++.-....... .....++..+.++|+|||.|++..-.
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 98543221111 12456788889999999999987633
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.32 E-value=1.5e-12 Score=96.49 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=80.1
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC------CccEEEEEeCCHHHHHHHHhCCccc------CCCceEEeccCCCcccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS------KICYIHACDISPRAVNFFKLNPLYD------ASKMNVFPCDVTEDDIL 143 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~------~~~~v~~~D~s~~~~~~~~~~~~~~------~~~i~~~~~d~~~~~~~ 143 (218)
...++.+|||||||+|..+..++... +..+|+++|.++..++.++++.... ..++.+..+|...
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~---- 152 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK---- 152 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG----
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccc----
Confidence 56788999999999999998887652 2348999999999999998764321 2578999999876
Q ss_pred cCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 144 NQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 144 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
...+.++||.|++...+.++|. .+.+.|+|||++++.-.
T Consensus 153 ~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 153 GYPPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVPVG 191 (223)
T ss_dssp CCGGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEEES
T ss_pred ccccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEEEe
Confidence 2334558999999988877752 35679999999988643
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.31 E-value=4.5e-12 Score=95.21 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=83.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
....+|||||||+|.++..+++.+|..+++++|. +.+++.+. ...++.+..+|+.+ +.+ .+|++++.
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~-----~~~rv~~~~gD~f~-----~~p--~aD~~~l~ 145 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS-----GSNNLTYVGGDMFT-----SIP--NADAVLLK 145 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CBTTEEEEECCTTT-----CCC--CCSEEEEE
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc-----ccCceEEEecCccc-----CCC--CCcEEEEE
Confidence 4557899999999999999999999999999998 44443221 23689999999866 222 57999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCC---eEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSG---GIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~g---G~li~~~~~ 191 (218)
.++|++++++...+++++++.|+|| |.+++.+.-
T Consensus 146 ~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~ 182 (244)
T d1fp2a2 146 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 182 (244)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred eecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence 9999999888999999999999998 778887743
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.27 E-value=2.4e-12 Score=91.66 Aligned_cols=108 Identities=15% Similarity=0.120 Sum_probs=72.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||+|||+|.+++.++.++ ++++++|.|+.+++.++++++..+.+..+...+.............+||+|+
T Consensus 38 ~~~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If 115 (171)
T d1ws6a1 38 RYPRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAF 115 (171)
T ss_dssp HCTTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred cccCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeE
Confidence 34578899999999999999988876 4899999999999999998776553334443333221111223345899999
Q ss_pred echhhcCCCcchHHHHHHHH--HHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNL--FIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~--~~~Lk~gG~li~~~ 189 (218)
+.-.+. . +....+..+ ..+|+|||++++..
T Consensus 116 ~DPPY~-~---~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 116 MAPPYA-M---DLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp ECCCTT-S---CTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred Eccccc-c---CHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 853322 1 122233333 35799999887754
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.27 E-value=7e-12 Score=94.21 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=82.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.+..+|||||||+|.++..+++.+|+.+++++|..+. ++.+. ...++.+...|+.+ ++|. .|++++.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~-----~~~r~~~~~~d~~~-----~~P~--ad~~~l~ 146 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAP-----SYPGVEHVGGDMFV-----SIPK--ADAVFMK 146 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCC-----CCTTEEEEECCTTT-----CCCC--CSCEECS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhcc-----cCCceEEecccccc-----cCCC--cceEEEE
Confidence 4467999999999999999999999999999998543 22211 22578999999865 2333 5778888
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+++.+++++...+++++++.|+|||.+++.+.-
T Consensus 147 ~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 147 WICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred EEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence 9999999889999999999999999999998743
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.26 E-value=3.7e-12 Score=98.18 Aligned_cols=114 Identities=11% Similarity=-0.035 Sum_probs=80.4
Q ss_pred HhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCCC
Q psy1107 73 FVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 73 ~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
.+....++.+|||++||+|.++..++..+ ++|+++|.|..+++.|++++..++ .++.|++.|+.+..-.......
T Consensus 126 ~~~~~~~~~rVLdlf~~tG~~sl~aa~~G--A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~ 203 (309)
T d2igta1 126 AVETADRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGS 203 (309)
T ss_dssp HHHHSSSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTC
T ss_pred HHhhccCCCeEEEecCCCcHHHHHHHhCC--CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCC
Confidence 33455678899999999999999998766 589999999999999999876543 3588999988652111112235
Q ss_pred cccEEEechh-hcCCC-------cchHHHHHHHHHHhccCCeEEEEE
Q psy1107 150 SVDIATLIFV-LSAIH-------PNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 150 ~~D~i~~~~~-l~~~~-------~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+||+|++.-. +..-+ .+....++..+..+|+|||.+++.
T Consensus 204 ~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~ 250 (309)
T d2igta1 204 TYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 250 (309)
T ss_dssp CBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred CCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 8999998321 10000 123455667788999999865554
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=8.3e-12 Score=89.78 Aligned_cols=107 Identities=10% Similarity=-0.013 Sum_probs=81.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..-.+.+|||++||+|.++++++.++.. +++.+|.++.+++.+++++.... .+..++..|+... ......+||+|
T Consensus 40 ~~~~~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~---l~~~~~~fDlI 115 (183)
T d2fpoa1 40 PVIVDAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF---LAQKGTPHNIV 115 (183)
T ss_dssp HHHTTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH---HSSCCCCEEEE
T ss_pred cccchhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeeccccc---ccccccccCEE
Confidence 3346789999999999999999998864 99999999999999999866543 5788888887652 23345689999
Q ss_pred EechhhcCCCcchHHHHHHHHHH--hccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFI--MLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~--~Lk~gG~li~~~ 189 (218)
++.-.... .....++..+.+ +|+++|++++-.
T Consensus 116 f~DPPY~~---~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 116 FVDPPFRR---GLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp EECCSSST---TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred EEcCcccc---chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 98543221 245666666654 699999888853
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.24 E-value=5.3e-12 Score=98.24 Aligned_cols=118 Identities=12% Similarity=0.111 Sum_probs=85.2
Q ss_pred HHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCC
Q psy1107 72 EFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 72 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~ 148 (218)
.++....++.+|||++||+|.++..++..+. .+|+++|+|+.+++.+++++..++ .++.++..|+.+..-......
T Consensus 137 ~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~ 215 (317)
T d2b78a2 137 ELINGSAAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHH 215 (317)
T ss_dssp HHHHTTTBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTT
T ss_pred HHHHHhhCCCceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhc
Confidence 3445566789999999999999988877654 489999999999999999876443 468899998865211111223
Q ss_pred CcccEEEechhh-----cCCC--cchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 149 NSVDIATLIFVL-----SAIH--PNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 149 ~~~D~i~~~~~l-----~~~~--~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+||+|++.-.- .... ..+...++..+.++|+|||.|++...
T Consensus 216 ~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 216 LTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp CCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 589999984210 0000 02456788899999999999999764
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.23 E-value=8e-12 Score=94.84 Aligned_cols=108 Identities=17% Similarity=0.156 Sum_probs=74.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.+..+++|+|||+|..+..++. .|+.+|+++|+|+.+++.|++|++..+ .++.+...|+.+. .....++||+|+
T Consensus 109 ~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~---~~~~~~~fDlIV 184 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---FKEKFASIEMIL 184 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---GGGGTTTCCEEE
T ss_pred ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccc---cccccCcccEEE
Confidence 3456899999999999988875 578899999999999999999987655 3566677777652 122235899999
Q ss_pred echhhc----CCC------c--------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLS----AIH------P--------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~----~~~------~--------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++-..- .++ | +....+-+-+.++|+|||.+++-.
T Consensus 185 sNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 185 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 236 (271)
T ss_dssp ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred EcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence 952200 000 0 001222233567899999877744
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2.2e-11 Score=89.80 Aligned_cols=112 Identities=14% Similarity=0.123 Sum_probs=87.1
Q ss_pred HhhhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcc--cccCCC
Q psy1107 73 FVNQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDD--ILNQVP 147 (218)
Q Consensus 73 ~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~--~~~~~~ 147 (218)
.+....++.+|||+|||+|..+..++...+ +.+++++|.++...+.|+.++...+ .++.++.+|+.+.. ......
T Consensus 53 ~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~ 132 (219)
T d2avda1 53 NLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGE 132 (219)
T ss_dssp HHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTC
T ss_pred HHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcc
Confidence 335667788999999999999999998754 6799999999999999998865444 57889988875531 112233
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.++||+|+.. + ..+.....++.+.++|+|||++++-+
T Consensus 133 ~~~fD~ifiD----~-dk~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 133 AGTFDVAVVD----A-DKENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp TTCEEEEEEC----S-CSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCccEEEEe----C-CHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 4589999973 2 33567788899999999999888855
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.19 E-value=1e-11 Score=89.11 Aligned_cols=118 Identities=13% Similarity=0.118 Sum_probs=84.5
Q ss_pred HHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccC
Q psy1107 68 NEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQ 145 (218)
Q Consensus 68 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~ 145 (218)
+.+..++.+..++.+|||++||+|.++.+++.++.. +++.+|.++.+++.++.++...+ .++.+++.|+........
T Consensus 30 ealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~ 108 (182)
T d2fhpa1 30 ESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFY 108 (182)
T ss_dssp HHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhc
Confidence 344445455567899999999999999999998864 89999999999999999866443 468888998765211011
Q ss_pred CCCCcccEEEechhhcCCCcchHHHHHHHHH--HhccCCeEEEEEe
Q psy1107 146 VPHNSVDIATLIFVLSAIHPNKFSTVVKNLF--IMLKSGGIILFRD 189 (218)
Q Consensus 146 ~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~--~~Lk~gG~li~~~ 189 (218)
....+||+|++.-... .......+..+. .+|+++|++++-.
T Consensus 109 ~~~~~fDlIflDPPY~---~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 109 EEKLQFDLVLLDPPYA---KQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp HTTCCEEEEEECCCGG---GCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ccCCCcceEEechhhh---hhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 1234799999853321 134566777765 4799999887643
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.19 E-value=6.7e-11 Score=86.15 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=62.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
-++.+|||+|||+|.+++.++..+. .+|+++|+++.+++.++++....+.+..+...|+.. + ..+||+|+++
T Consensus 45 l~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~------~-~~~fD~Vi~n 116 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE------F-NSRVDIVIMN 116 (201)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG------C-CCCCSEEEEC
T ss_pred CCCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhh------h-CCcCcEEEEc
Confidence 4678999999999999998887765 499999999999999999988777788888888755 1 3479999986
Q ss_pred hhh
Q psy1107 158 FVL 160 (218)
Q Consensus 158 ~~l 160 (218)
-..
T Consensus 117 PP~ 119 (201)
T d1wy7a1 117 PPF 119 (201)
T ss_dssp CCC
T ss_pred Ccc
Confidence 544
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=5.4e-10 Score=81.25 Aligned_cols=101 Identities=14% Similarity=0.030 Sum_probs=83.6
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+++|+|+|.|.-++.++-..|+.+++.+|.+...+..++......+ .++.+++.++.+. ....+||+|++.
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~-----~~~~~fD~V~sR 139 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF-----PSEPPFDGVISR 139 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS-----CCCSCEEEEECS
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhh-----ccccccceehhh
Confidence 4579999999999999999988999999999999999999888766555 5899998887662 123479999985
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
. + .....++..+...++++|.+++.-.
T Consensus 140 A----~--~~~~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 140 A----F--ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp C----S--SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred h----h--cCHHHHHHHHHHhcCCCcEEEEECC
Confidence 4 3 3567888999999999999998753
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.13 E-value=9.2e-11 Score=84.75 Aligned_cols=70 Identities=23% Similarity=0.250 Sum_probs=57.8
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
-.+.+|||+|||+|.+++.++..++ .+|+++|+++.+++.|+++.. ++.+.++|+.+ + .++||+|+++
T Consensus 47 l~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~----~~~~~~~D~~~------l-~~~fD~Vi~N 114 (197)
T d1ne2a_ 47 IGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCG----GVNFMVADVSE------I-SGKYDTWIMN 114 (197)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCT----TSEEEECCGGG------C-CCCEEEEEEC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccc----cccEEEEehhh------c-CCcceEEEeC
Confidence 3678999999999999988887765 389999999999999998753 68899999865 1 2489999986
Q ss_pred hh
Q psy1107 158 FV 159 (218)
Q Consensus 158 ~~ 159 (218)
-.
T Consensus 115 PP 116 (197)
T d1ne2a_ 115 PP 116 (197)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.3e-10 Score=86.07 Aligned_cols=84 Identities=13% Similarity=0.019 Sum_probs=63.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCccc--ccCCCCCcccE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDI--LNQVPHNSVDI 153 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~--~~~~~~~~~D~ 153 (218)
.+..++||+|||+|..+..++...|+++++|+|+|+.+++.|++++..++ .++.+.+.+...... ......++||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 44579999999999999999988888999999999999999999977655 456666655433211 11234568999
Q ss_pred EEechhhc
Q psy1107 154 ATLIFVLS 161 (218)
Q Consensus 154 i~~~~~l~ 161 (218)
|+|+-.+.
T Consensus 140 ivsNPPY~ 147 (250)
T d2h00a1 140 CMCNPPFF 147 (250)
T ss_dssp EEECCCCC
T ss_pred EEecCccc
Confidence 99965443
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=4e-11 Score=88.18 Aligned_cols=110 Identities=11% Similarity=0.186 Sum_probs=79.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcc--cccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDD--ILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~--~~~~~~~~ 149 (218)
....++.+|||+|||+|..+..++... ++.+++++|.++...+.++.+....+ .++.++.+|..+.. +.......
T Consensus 52 v~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~ 131 (214)
T d2cl5a1 52 IREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVD 131 (214)
T ss_dssp HHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCC
T ss_pred HHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccc
Confidence 445567899999999999999998764 45799999999999999998766544 46899998876531 11123445
Q ss_pred cccEEEechhhcCCCcchH--HHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHPNKF--STVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~--~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+||+|++.. .. +.. ...+....++|+|||++++-+
T Consensus 132 ~~D~ifiD~----~~-~~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 132 TLDMVFLDH----WK-DRYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp CEEEEEECS----CG-GGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred ccceeeecc----cc-cccccHHHHHHHhCccCCCcEEEEeC
Confidence 799998742 21 222 234566778899999877643
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.04 E-value=1.4e-10 Score=85.84 Aligned_cols=113 Identities=15% Similarity=0.077 Sum_probs=85.8
Q ss_pred HHhhhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccc---cC
Q psy1107 72 EFVNQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDIL---NQ 145 (218)
Q Consensus 72 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~---~~ 145 (218)
..+....++.+|||+|+++|..+..++...| +++++.+|.++...+.|++++...+ .++.++.+++.+..-. ..
T Consensus 52 ~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~ 131 (227)
T d1susa1 52 SMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDE 131 (227)
T ss_dssp HHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCG
T ss_pred HHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhcc
Confidence 3335556788999999999999999997754 5799999999999999998876544 5688888887542100 01
Q ss_pred CCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 146 VPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 146 ~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
...++||+|+... ..+.....++.+.++|+|||++++-+
T Consensus 132 ~~~~~fD~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 132 KNHGSYDFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp GGTTCBSEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred ccCCceeEEEecc-----chhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 1245799999742 22567789999999999999888744
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.98 E-value=3.9e-09 Score=78.11 Aligned_cols=105 Identities=13% Similarity=0.102 Sum_probs=82.1
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
...+++|+|+|.|.-++.++-..|+.+++.+|.+...+...+......+ .++.+++..+.+.... .-...+||+|++.
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~-~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-KDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-TTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcccc-ccccccceEEEEh
Confidence 4579999999999999999988899999999999999998887655555 5788877766542111 1113489999995
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
. + .....++..+..++++||.+++.-.
T Consensus 149 A----v--a~l~~ll~~~~~~l~~~g~~i~~KG 175 (239)
T d1xdza_ 149 A----V--ARLSVLSELCLPLVKKNGLFVALKA 175 (239)
T ss_dssp C----C--SCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred h----h--hCHHHHHHHHhhhcccCCEEEEECC
Confidence 4 3 3567889999999999999998653
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.92 E-value=1.3e-09 Score=84.34 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=81.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc------cCCCceEEeccCCCcccccCCCCCc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY------DASKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~------~~~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
.+.+.+||.||.|.|..+..+++..+..+++++|+++.+++.|++.+.. ...++.++..|.... ..-...+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~---l~~~~~~ 151 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY---LERTEER 151 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH---HHHCCCC
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHH---hhhcCCc
Confidence 3567899999999999999998877777999999999999999987532 236789999988762 1123458
Q ss_pred ccEEEechh--hc-CCCcc--hHHHHHHHHHHhccCCeEEEEE
Q psy1107 151 VDIATLIFV--LS-AIHPN--KFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 151 ~D~i~~~~~--l~-~~~~~--~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
||+|++... .. ..++. -...+++.+++.|+|||++++.
T Consensus 152 yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred ccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 999996431 11 11111 1257889999999999998874
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.91 E-value=1.6e-09 Score=84.71 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=79.5
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc-----CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW-----SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~-----~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
...++.+|||+|||+|.++..+... .+...++|+|+++.++..|+.+.........+.+.|... ..+..+
T Consensus 114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~-----~~~~~~ 188 (328)
T d2f8la1 114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-----NLLVDP 188 (328)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-----CCCCCC
T ss_pred CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccc-----cccccc
Confidence 3456789999999999999887643 344589999999999999988766555667777776544 334458
Q ss_pred ccEEEechhhcCCCc----------------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 151 VDIATLIFVLSAIHP----------------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~----------------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
||+|+++-.+..... .....++..+.+.|+|||.+++.-
T Consensus 189 fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~ 243 (328)
T d2f8la1 189 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 243 (328)
T ss_dssp EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEe
Confidence 999999754322110 113357889999999999877654
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.88 E-value=3.6e-09 Score=75.65 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=78.8
Q ss_pred HHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCC
Q psy1107 70 FHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQV 146 (218)
Q Consensus 70 ~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~ 146 (218)
+..++.+.-.+.+|||+.||+|.++.+.+.++.. +++.+|.+..+++.++++++..+ ....+...|+.... ....
T Consensus 34 lFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l-~~~~ 111 (183)
T d2ifta1 34 LFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL-KQPQ 111 (183)
T ss_dssp HHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT-TSCC
T ss_pred HHHHhhhhcccceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccc-cccc
Confidence 3333333346779999999999999999999864 99999999999999998865433 23455555543311 1223
Q ss_pred CCCcccEEEechhhcCCCcchHHHHHHHHH--HhccCCeEEEEEe
Q psy1107 147 PHNSVDIATLIFVLSAIHPNKFSTVVKNLF--IMLKSGGIILFRD 189 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~--~~Lk~gG~li~~~ 189 (218)
...+||+|++.-.... .....++..+. .+|+++|++++-.
T Consensus 112 ~~~~fDlIFlDPPY~~---~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 112 NQPHFDVVFLDPPFHF---NLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp SSCCEEEEEECCCSSS---CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cCCcccEEEechhHhh---hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 3447999987533221 34566777765 4799999888744
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=1.4e-08 Score=80.15 Aligned_cols=124 Identities=16% Similarity=0.185 Sum_probs=86.7
Q ss_pred ccCCCcccchHHHHHHh---hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEE
Q psy1107 58 KFFKDRNWTVNEFHEFV---NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVF 133 (218)
Q Consensus 58 ~~~~~~~~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~ 133 (218)
.|++.+....+.+...+ ....+..+|||+.||+|.++..+++.+ .+|+|+|.++.+++.|+.++..++ .|+.|+
T Consensus 188 sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~ 265 (358)
T d1uwva2 188 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFY 265 (358)
T ss_dssp SCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceee
Confidence 45555544444444333 345567899999999999999998876 499999999999999999877666 689999
Q ss_pred eccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 134 PCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 134 ~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..+..+...........+|+|++.- |......++..+.+. +|.-+++++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~d~vilDP-----PR~G~~~~~~~l~~~-~~~~ivYVSC 315 (358)
T d1uwva2 266 HENLEEDVTKQPWAKNGFDKVLLDP-----ARAGAAGVMQQIIKL-EPIRIVYVSC 315 (358)
T ss_dssp ECCTTSCCSSSGGGTTCCSEEEECC-----CTTCCHHHHHHHHHH-CCSEEEEEES
T ss_pred ecchhhhhhhhhhhhccCceEEeCC-----CCccHHHHHHHHHHc-CCCEEEEEeC
Confidence 9987764222223345789998731 112233556666554 7777888876
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.83 E-value=3.8e-09 Score=80.74 Aligned_cols=109 Identities=12% Similarity=0.096 Sum_probs=80.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----cCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----DASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
+.+.+||-||.|.|..+..+++..+..+++++|+++.+++.+++.+.. ...++.++..|.... ..-...+||
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~---l~~~~~~yD 164 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY---VRKFKNEFD 164 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH---GGGCSSCEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHH---HhcCCCCCC
Confidence 457899999999999999998876667999999999999999987542 236889999987652 222345899
Q ss_pred EEEechhhcC-CCcc--hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSA-IHPN--KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~-~~~~--~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++...-.. .+.. -...+++.+.+.|+|||++++..
T Consensus 165 vIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 165 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 9997432111 1111 13578899999999999888854
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.82 E-value=3.5e-09 Score=80.53 Aligned_cols=107 Identities=14% Similarity=0.094 Sum_probs=78.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----------cCCCceEEeccCCCcccccC
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----------DASKMNVFPCDVTEDDILNQ 145 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----------~~~~i~~~~~d~~~~~~~~~ 145 (218)
..++.+||-+|+|.|..+..++...+ .+++++|+++.+++.|+..+.. ...+++++..|.... ..
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~--l~- 145 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF--IK- 145 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH--HH-
T ss_pred CCCCceEEEecCCchHHHHHHHHhCC-ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHH--Hh-
Confidence 45678999999999999999887544 5899999999999999875432 135788999987652 11
Q ss_pred CCCCcccEEEechhhcCCCc-c--hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 146 VPHNSVDIATLIFVLSAIHP-N--KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 146 ~~~~~~D~i~~~~~l~~~~~-~--~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
...+||+|++... ....+ . -...+++.+++.|+|+|.+++..
T Consensus 146 -~~~~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 146 -NNRGFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp -HCCCEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -ccCCCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 1357999997432 21111 1 12478999999999999988754
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.80 E-value=8.2e-09 Score=78.24 Aligned_cols=110 Identities=17% Similarity=0.115 Sum_probs=82.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc-----ccCCCceEEeccCCCcccccCCCCCcc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL-----YDASKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~-----~~~~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
..++.+||-+|.|.|..+..+++..+..+++++|+++.+++.|+.... ....++.++..|.... ......+|
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~---l~~~~~~y 149 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH---IAKSENQY 149 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH---HHTCCSCE
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHH---HhhcCCCC
Confidence 356789999999999999999887666699999999999999998753 1236788988887652 22234589
Q ss_pred cEEEechhhcCCCcc--hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPN--KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|+....-..-++. -...+++.+.+.|+|+|.++...
T Consensus 150 DvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 150 DVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp EEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 999974321111111 14578899999999999888754
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=7.6e-09 Score=73.60 Aligned_cols=131 Identities=11% Similarity=0.117 Sum_probs=86.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc----cCCCCCcc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~~~~~ 151 (218)
..+..+|||+||++|.|+..+++. .+...++++|+.+- . ...++.++.+|+.+.... .....+++
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~-~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------D-PIVGVDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------C-CCTTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------c-ccCCceEeecccccchhhhhhhhhccCcce
Confidence 467889999999999999888765 44468999997541 1 125788999998775321 12344689
Q ss_pred cEEEechhhcCCCcc---------hHHHHHHHHHHhccCCeEEEEEecCCCchhhhccCCCCccCccceeccCCC
Q psy1107 152 DIATLIFVLSAIHPN---------KFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQDKT 217 (218)
Q Consensus 152 D~i~~~~~l~~~~~~---------~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (218)
|+|++-......... .....+.-+.++|++||.+++=-|...+...+.......+.....+|+.+.
T Consensus 90 DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~F~~V~~~KP~aS 164 (180)
T d1ej0a_ 90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSS 164 (180)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEEEEEECCTTS
T ss_pred eEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhhcCEEEEECCCCc
Confidence 999986543322111 123566667899999999999888766655444433444444445555443
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.1e-08 Score=77.94 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=80.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc-----ccCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL-----YDASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~-----~~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
+.+.+||-+|.|.|..+..+.+..+..+++++|+++.+++.|++... ....++.++..|.... ..-...+||
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~---l~~~~~~yD 153 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF---MKQNQDAFD 153 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH---HHTCSSCEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHH---HhcCCCCCC
Confidence 45689999999999999999877666799999999999999998753 2346899999987652 222345899
Q ss_pred EEEechhhcCCCcc--hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPN--KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++...-..-++. -...+++.+++.|+|||.+++..
T Consensus 154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 99984321111111 12367899999999999998865
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.75 E-value=1.6e-08 Score=77.16 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=82.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc-----ccCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL-----YDASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~-----~~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
+++.+||-+|.|.|..+..+++..+..+++++|+++.+++.++.... ..+.++.++..|.... ......++||
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~--l~~~~~~~yD 156 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF--LKNAAEGSYD 156 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH--HHTSCTTCEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHH--HhhccccCcc
Confidence 45679999999999999999887666699999999999999998653 2246888888887652 2234445899
Q ss_pred EEEechhhcCCCcc--hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPN--KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|+....-...++. -...+++.+++.|+|||++++..
T Consensus 157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 99973221111111 13578899999999999998864
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.72 E-value=1.2e-08 Score=78.40 Aligned_cols=110 Identities=17% Similarity=0.106 Sum_probs=78.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----cCCCceEEeccCCCcccccCCCCCcc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----DASKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
...+.+||-+|.|.|..+..+++..+..+++++|+++.+++.++..... ...++.++..|.... ......+|
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~---l~~~~~~y 180 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF---LKNHKNEF 180 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH---HHHCTTCE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHH---HHhCCCCC
Confidence 3457899999999999999999876666999999999999999986532 236788888887652 12234589
Q ss_pred cEEEechhhcCCCcc--hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPN--KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|++...-..-++. -...+++.+.+.|+|||+++...
T Consensus 181 DvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 181 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp EEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred CEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 999984321111111 23477899999999999888854
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.66 E-value=2e-07 Score=68.86 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=54.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED 140 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 140 (218)
....++.+|||||||+|.++..+++.+ .+++++|+++..++.++.+... ..++.++++|+.+.
T Consensus 17 ~~~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~-~~n~~i~~~D~l~~ 79 (235)
T d1qama_ 17 IRLNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD-HDNFQVLNKDILQF 79 (235)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT-CCSEEEECCCGGGC
T ss_pred cCCCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhc-ccchhhhhhhhhhc
Confidence 345688999999999999999999876 4899999999999999987543 36899999999874
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.64 E-value=3.6e-08 Score=72.70 Aligned_cols=107 Identities=9% Similarity=0.074 Sum_probs=71.4
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
...++.+|||+|++.|..+..++.. +++++++++|+++...... .....++.++.+|..+......+....+
T Consensus 77 ~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~----~~~~~~I~~i~gDs~~~~~~~~l~~~~~ 152 (232)
T d2bm8a1 77 WELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP----ASDMENITLHQGDCSDLTTFEHLREMAH 152 (232)
T ss_dssp HHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC----GGGCTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred HHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh----hccccceeeeecccccHHHHHHHHhcCC
Confidence 3346789999999999887766543 4667999999977532211 1223689999999877655445555568
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+|+.-.. |.. ......+ .+..+|++||++++-|.
T Consensus 153 dlIfID~~--H~~-~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 153 PLIFIDNA--HAN-TFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp SEEEEESS--CSS-HHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred CEEEEcCC--cch-HHHHHHH-HHhcccCcCCEEEEEcC
Confidence 88876432 332 1222223 35689999999999773
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.64 E-value=9.4e-08 Score=67.83 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=87.3
Q ss_pred HHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc-cCC
Q psy1107 68 NEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL-NQV 146 (218)
Q Consensus 68 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~ 146 (218)
.++... ....++..++|..+|.|..+..+++.+ .+++|+|.++.++..++... ..++.+++.++.+.... ...
T Consensus 8 ~Evl~~-l~~~~g~~~vD~T~G~GGhs~~iL~~~--~~viaiD~D~~ai~~a~~~~---~~~~~~~~~~f~~~~~~l~~~ 81 (182)
T d1wg8a2 8 QEALDL-LAVRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKGLH---LPGLTVVQGNFRHLKRHLAAL 81 (182)
T ss_dssp HHHHHH-HTCCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHTC---CTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHh-cCCCCCCEEEEeCCCCcHHHHHHhccc--CcEEEEhhhhhHHHHHhhcc---ccceeEeehHHHHHHHHHHHc
Confidence 334343 345678899999999999999998864 59999999999999998763 35788888877664221 123
Q ss_pred CCCcccEEEechhhcCCC-------cchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 147 PHNSVDIATLIFVLSAIH-------PNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~-------~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
..+++|.|++...+..+. .+.....+.....+|+|||.+++..|.....
T Consensus 82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed 137 (182)
T d1wg8a2 82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLED 137 (182)
T ss_dssp TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHH
T ss_pred CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchh
Confidence 345799998743222110 0234457888899999999999998765543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.64 E-value=6.1e-08 Score=73.87 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=79.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEe-ccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFP-CDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||+|+|.|.-+..+++...+..++++|.++..+..++.+.+..+.+..... .|.... .......||.
T Consensus 98 L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~---~~~~~~~fd~ 174 (284)
T d1sqga2 98 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPS---QWCGEQQFDR 174 (284)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTH---HHHTTCCEEE
T ss_pred cCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccc---hhcccccccE
Confidence 556788999999999999999998877667999999999999999888766654333333 332221 1223357999
Q ss_pred EEec------hhhcCCC-------cch-------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLI------FVLSAIH-------PNK-------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~------~~l~~~~-------~~~-------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++- +++..-| +.+ +..++..+.++|||||.|+.+.
T Consensus 175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT 230 (284)
T d1sqga2 175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 230 (284)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 9982 2222111 111 4588889999999999998865
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.63 E-value=2.4e-08 Score=74.41 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=61.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||||||+|.++..+++.+ .+++++|+++.+++.++.+.... .++.++++|+.+. .++....+.|
T Consensus 25 ~~~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~~-~n~~ii~~D~l~~----~~~~~~~~~v 97 (245)
T d1yuba_ 25 LNLKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLN-TRVTLIHQDILQF----QFPNKQRYKI 97 (245)
T ss_dssp CCCCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTC-SEEEECCSCCTTT----TCCCSSEEEE
T ss_pred cCCCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhhc-cchhhhhhhhhcc----ccccceeeeE
Confidence 345678899999999999999999876 48999999999988887765432 5899999999873 3444455555
Q ss_pred EechhhcCCC
Q psy1107 155 TLIFVLSAIH 164 (218)
Q Consensus 155 ~~~~~l~~~~ 164 (218)
+. ....+++
T Consensus 98 v~-NLPY~Is 106 (245)
T d1yuba_ 98 VG-NIPYHLS 106 (245)
T ss_dssp EE-ECCSSSC
T ss_pred ee-eeehhhh
Confidence 54 3334554
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.57 E-value=1.2e-07 Score=73.21 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=79.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|.-+..++.. .....+++.|.++..+..++.+....+ .++.....|... .......||
T Consensus 112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~----~~~~~~~fD 187 (313)
T d1ixka_ 112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLH----IGELNVEFD 187 (313)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGG----GGGGCCCEE
T ss_pred ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccc----ccccccccc
Confidence 55678899999999999998888765 334689999999999999888766544 566666666544 223345799
Q ss_pred EEEechh------hcCCC-------cc-------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFV------LSAIH-------PN-------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~------l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.|++... +..-| ++ .+..++..+.+.|||||.++.+.
T Consensus 188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT 244 (313)
T d1ixka_ 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST 244 (313)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence 9988222 11111 11 13478888999999999988865
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.56 E-value=8.7e-08 Score=70.13 Aligned_cols=102 Identities=18% Similarity=0.259 Sum_probs=68.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||+|||+|.++..+.+..+ ...++|+|+++.++..+ ....+.+.|... ......||+
T Consensus 15 ~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~--------~~~~~~~~~~~~-----~~~~~~fd~ 81 (223)
T d2ih2a1 15 AEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------PWAEGILADFLL-----WEPGEAFDL 81 (223)
T ss_dssp CCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------TTEEEEESCGGG-----CCCSSCEEE
T ss_pred cCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc--------ccceeeeeehhc-----cccccccce
Confidence 3456778999999999999888876533 35799999998654332 234556666544 223457999
Q ss_pred EEechhhcCCCc---------------------------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHP---------------------------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~---------------------------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++......... +....++..+.+.|++||++.+..
T Consensus 82 ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 82 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 998544321100 013466788899999999988764
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.47 E-value=1.1e-07 Score=75.03 Aligned_cols=123 Identities=13% Similarity=0.041 Sum_probs=85.4
Q ss_pred ccCCCcccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC---------
Q psy1107 58 KFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS--------- 128 (218)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~--------- 128 (218)
-||.......+.+.-++....++.+|||..||+|..++.++...+..+|++.|+|+.+++.++++.+.++.
T Consensus 24 vFYNp~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~ 103 (375)
T d2dula1 24 VFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGR 103 (375)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSE
T ss_pred cccCHHHhhhhHHHHHHHHHhCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCcccccccccc
Confidence 45444455556665555555578899999999999999877655555999999999999999988654321
Q ss_pred -------CceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 129 -------KMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 129 -------~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+.+.+.|+... .......||+|.+. |......+++.+.+.++.||+|.+..
T Consensus 104 ~~~~~~~~~~~~~~Da~~~---~~~~~~~fDvIDiD------PfGs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 104 AILKGEKTIVINHDDANRL---MAERHRYFHFIDLD------PFGSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp EEEESSSEEEEEESCHHHH---HHHSTTCEEEEEEC------CSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccceeEeehhhhhhh---hHhhcCcCCcccCC------CCCCcHHHHHHHHHHhccCCEEEEEe
Confidence 233444443221 11123469998874 22345679999999999999999965
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=9.9e-07 Score=67.29 Aligned_cols=81 Identities=12% Similarity=0.003 Sum_probs=61.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|+|+|.-+..++.. .....++++|+++..+..++.++...+ .++.+...|........+ ..+.||
T Consensus 90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~-~~~~fD 168 (293)
T d2b9ea1 90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDP-RYHEVH 168 (293)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCG-GGTTEE
T ss_pred cCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccc-ccceee
Confidence 55678889999999999999888865 345699999999999999988877665 678888888765221111 124799
Q ss_pred EEEe
Q psy1107 153 IATL 156 (218)
Q Consensus 153 ~i~~ 156 (218)
.|++
T Consensus 169 ~VL~ 172 (293)
T d2b9ea1 169 YILL 172 (293)
T ss_dssp EEEE
T ss_pred EEee
Confidence 9988
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.34 E-value=6.3e-07 Score=72.03 Aligned_cols=110 Identities=18% Similarity=0.262 Sum_probs=75.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC----C---------ccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS----K---------ICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVT 138 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~----~---------~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~ 138 (218)
....++.+|+|++||+|.++..+.+.. . ...++|+|+++.+...|+.+....+ ....+...|..
T Consensus 158 l~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l 237 (425)
T d2okca1 158 INPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSL 237 (425)
T ss_dssp HCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTT
T ss_pred ccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchh
Confidence 344567899999999999998876541 1 1259999999999999887643222 23455666654
Q ss_pred CcccccCCCCCcccEEEechhhcCCCc---------------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 139 EDDILNQVPHNSVDIATLIFVLSAIHP---------------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 139 ~~~~~~~~~~~~~D~i~~~~~l~~~~~---------------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
. ..+..+||+|+++-.+..-.. .....++..+..+|++||.+.++-
T Consensus 238 ~-----~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 238 E-----KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp T-----SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred h-----hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 4 234458999999655432110 113468899999999999877754
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.19 E-value=2.9e-06 Score=62.14 Aligned_cols=112 Identities=12% Similarity=0.078 Sum_probs=66.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCc-eEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKM-NVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...+..+|+|+|||.|.++..++...+...+.|+++--..-+ .-......+.++ .+... .++ ...+....|+|
T Consensus 63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~~ni~~~~~~----~dv-~~l~~~~~D~v 136 (257)
T d2p41a1 63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYGWNLVRLQSG----VDV-FFIPPERCDTL 136 (257)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTTGGGEEEECS----CCT-TTSCCCCCSEE
T ss_pred CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCccccccccccccchhh----hhH-HhcCCCcCCEE
Confidence 346778999999999999999988766567888876321100 000001111121 12111 111 33455689999
Q ss_pred EechhhcCCCc----chHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 155 TLIFVLSAIHP----NKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 155 ~~~~~l~~~~~----~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+|...-..-.+ .....+++.+.++|+|||-|++--+.++
T Consensus 137 lcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py 179 (257)
T d2p41a1 137 LCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY 179 (257)
T ss_dssp EECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred EeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC
Confidence 99654321111 1223677888899999999998765544
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1e-05 Score=60.83 Aligned_cols=90 Identities=29% Similarity=0.351 Sum_probs=65.4
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++..|||||+|.|.++..+++.+ .+++++++++..++.+++...... .++.++.+|+...+ ++ .++
T Consensus 17 ~~~~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~----~~--~~~ 88 (278)
T d1zq9a1 17 AALRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD----LP--FFD 88 (278)
T ss_dssp TCCCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC----CC--CCS
T ss_pred hCCCCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh----hh--hhh
Confidence 345578899999999999999999886 399999999999999987654332 57899999998743 22 234
Q ss_pred EEEechhhcCCCcchHHHHHHHHHH
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFI 177 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~ 177 (218)
.|+. .+|..-.-.++..+..
T Consensus 89 ~vV~-----NLPY~Iss~il~~~~~ 108 (278)
T d1zq9a1 89 TCVA-----NLPYQISSPFVFKLLL 108 (278)
T ss_dssp EEEE-----ECCGGGHHHHHHHHHH
T ss_pred hhhc-----chHHHHHHHHHHHHHh
Confidence 5553 4554444455555443
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=2.2e-06 Score=63.69 Aligned_cols=63 Identities=11% Similarity=0.228 Sum_probs=53.2
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD 141 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 141 (218)
...++..|||||||.|.++..+++.+ .+++++|+++..++.++..... ..++.++.+|+...+
T Consensus 18 ~~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~-~~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 18 NPQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFL-GPKLTIYQQDAMTFN 80 (252)
T ss_dssp CCCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTT-GGGEEEECSCGGGCC
T ss_pred CCCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhh-ccchhHHhhhhhhhc
Confidence 45678899999999999999999876 4899999999999999886543 258999999998743
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=5.2e-06 Score=68.32 Aligned_cols=117 Identities=10% Similarity=0.067 Sum_probs=72.2
Q ss_pred HHHHHhhhcCCCcEEEEecCCCchhHHHHhhcC----C--------------ccEEEEEeCCHHHHHHHHhCCcccCCCc
Q psy1107 69 EFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWS----K--------------ICYIHACDISPRAVNFFKLNPLYDASKM 130 (218)
Q Consensus 69 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~----~--------------~~~v~~~D~s~~~~~~~~~~~~~~~~~i 130 (218)
.+..+ ....++.+|+|++||+|.++..+.+.. . ...++|+|+++.+...|+-++-..+...
T Consensus 155 ~mv~l-l~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~ 233 (524)
T d2ar0a1 155 TIIHL-LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 233 (524)
T ss_dssp HHHHH-HCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred hhhhc-ccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccc
Confidence 33343 344567799999999999987765431 0 1258999999999998886533222111
Q ss_pred ------eEEeccCCCcccccCCCCCcccEEEechhhcCCCc------------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 131 ------NVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHP------------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 131 ------~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~------------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+...+.... ......+||+|+++-.+..-.. ..-..++..+.+.|++||++.++-
T Consensus 234 ~i~~~~~~~~~~~l~~---d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 234 NLDHGGAIRLGNTLGS---DGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp BGGGTBSEEESCTTSH---HHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhhhhhhhh---cccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 2222332221 1122347999998654321110 112358899999999999877754
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.66 E-value=0.00024 Score=55.03 Aligned_cols=113 Identities=13% Similarity=0.137 Sum_probs=75.4
Q ss_pred CCcEEEEecCCCchhHHHHhhc----------------CCccEEEEEeCCHHHHHHHHhCCcccC---CC--ceEEeccC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSW----------------SKICYIHACDISPRAVNFFKLNPLYDA---SK--MNVFPCDV 137 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~----------------~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~--i~~~~~d~ 137 (218)
+..+|.|+||.+|..+..++.. .|..+++--|.-..-....-....... .+ +..+.+.+
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 3468999999999888544331 245577777865544444444432211 12 22334556
Q ss_pred CCcccccCCCCCcccEEEechhhcCCCc--c-----------------------------hHHHHHHHHHHhccCCeEEE
Q psy1107 138 TEDDILNQVPHNSVDIATLIFVLSAIHP--N-----------------------------KFSTVVKNLFIMLKSGGIIL 186 (218)
Q Consensus 138 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~--~-----------------------------~~~~~l~~~~~~Lk~gG~li 186 (218)
.. .-+|.++.+++++...+|+++. . |+..+|+.=.+-|+|||.++
T Consensus 131 Y~----rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mv 206 (359)
T d1m6ex_ 131 YG----RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMV 206 (359)
T ss_dssp SS----CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEE
T ss_pred hh----hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 55 5678899999999999998751 1 24467777788999999999
Q ss_pred EEecCCCch
Q psy1107 187 FRDYGLHDM 195 (218)
Q Consensus 187 ~~~~~~~~~ 195 (218)
+.-.++.+.
T Consensus 207 l~~~gr~~~ 215 (359)
T d1m6ex_ 207 LTILGRRSE 215 (359)
T ss_dssp EEEEECSSS
T ss_pred EEEeccCCC
Confidence 988776654
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.27 E-value=0.00026 Score=54.22 Aligned_cols=59 Identities=14% Similarity=0.017 Sum_probs=49.2
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE 139 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~ 139 (218)
++..|||||+|.|.++..+.+.+...+++++|+++...+..+.... +.++.+++.|+..
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--GSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--TSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--CCCcEEEeCchhh
Confidence 5678999999999999999876422489999999999999988754 3578888998865
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.00 E-value=0.00023 Score=49.50 Aligned_cols=102 Identities=18% Similarity=0.157 Sum_probs=66.4
Q ss_pred hhcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc----ccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI----LNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~ 149 (218)
....++.+||=+|||. |..+.++++..-..+|+++|.++..++.+++.-. .+++ |..+... .......
T Consensus 23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa-----~~~i--~~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA-----TDIL--NYKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC-----SEEE--CGGGSCHHHHHHHHTTTS
T ss_pred hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc-----cccc--cccchhHHHHHHHHhhcc
Confidence 4567788999999985 7888888876422379999999999999986411 1221 2222111 1112233
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+|+|+-. .. -...++.+.++++|+|.+++....
T Consensus 96 G~D~vid~-----~g---~~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 96 GVDRVIMA-----GG---GSETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp CEEEEEEC-----SS---CTTHHHHHHHHEEEEEEEEECCCC
T ss_pred CcceEEEc-----cC---CHHHHHHHHHHHhcCCEEEEEeec
Confidence 58988743 21 124567788999999999997643
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.92 E-value=0.00033 Score=49.61 Aligned_cols=109 Identities=13% Similarity=0.049 Sum_probs=68.5
Q ss_pred hhcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc----cCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~~~ 149 (218)
....++.+||-+|||. |..+..+++.....+++++|.++..++.+++.-. .++ .+..+.++. .-....
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga-----~~~--~~~~~~~~~~~i~~~t~g~ 93 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF-----EIA--DLSLDTPLHEQIAALLGEP 93 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-----EEE--ETTSSSCHHHHHHHHHSSS
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc-----cEE--EeCCCcCHHHHHHHHhCCC
Confidence 4567889999999997 6666777665434599999999999999987621 111 111111110 111233
Q ss_pred cccEEEechhhc-------CCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 150 SVDIATLIFVLS-------AIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~-------~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+|+++-.-... .+........++.+.+.++|+|.+++...
T Consensus 94 g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 94 EVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp CEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred CcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 588887532111 00111234688999999999999998653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.78 E-value=0.0021 Score=44.58 Aligned_cols=101 Identities=13% Similarity=0.072 Sum_probs=64.8
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc-------cccCCC
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD-------ILNQVP 147 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~ 147 (218)
...++.+||-+|+| .|..+..+++..-..+|+++|.++..++.+++.-. ..++ |..+.+ ......
T Consensus 25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa-----~~vi--~~~~~~~~~~~~~i~~~~~ 97 (182)
T d1vj0a2 25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA-----DLTL--NRRETSVEERRKAIMDITH 97 (182)
T ss_dssp SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC-----SEEE--ETTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccc-----eEEE--eccccchHHHHHHHHHhhC
Confidence 34578899999998 47777788766422389999999999999987621 1111 111111 011122
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
...+|+|+.. .. -...++.+.+.|++||.+++....
T Consensus 98 ~~g~Dvvid~-----vG---~~~~~~~a~~~l~~~G~iv~~G~~ 133 (182)
T d1vj0a2 98 GRGADFILEA-----TG---DSRALLEGSELLRRGGFYSVAGVA 133 (182)
T ss_dssp TSCEEEEEEC-----SS---CTTHHHHHHHHEEEEEEEEECCCC
T ss_pred CCCceEEeec-----CC---chhHHHHHHHHhcCCCEEEEEeec
Confidence 3358998843 21 123567788999999999886543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.77 E-value=0.00092 Score=46.33 Aligned_cols=106 Identities=12% Similarity=0.003 Sum_probs=69.0
Q ss_pred hhcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc---cccCCCCCc
Q psy1107 75 NQDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD---ILNQVPHNS 150 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~~~~ 150 (218)
....++.+||=+|||. |..+..+++..-...++++|.++..++.+++.-. ..++...-.+.. .......+.
T Consensus 24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga-----~~~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA-----TDCLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----SEEECGGGCSSCHHHHHHHHHTSC
T ss_pred hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC-----CcccCCccchhhhhhhHhhhhcCC
Confidence 4456788999999985 8888888877533489999999999999998621 111111111100 001112346
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEecCCC
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDYGLH 193 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~~~~ 193 (218)
+|+++-. . .-...+..+.+.+++| |.+++......
T Consensus 99 ~d~vie~-----~---G~~~~~~~a~~~~~~g~G~~v~vG~~~~ 134 (174)
T d1e3ia2 99 VDYSLDC-----A---GTAQTLKAAVDCTVLGWGSCTVVGAKVD 134 (174)
T ss_dssp BSEEEES-----S---CCHHHHHHHHHTBCTTTCEEEECCCSSS
T ss_pred CcEEEEe-----c---ccchHHHHHHHHhhcCCeEEEecCCCCC
Confidence 8988742 2 2345788899999996 99998765443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.75 E-value=0.0012 Score=45.64 Aligned_cols=101 Identities=17% Similarity=0.093 Sum_probs=65.1
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc---cCCCCCc
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL---NQVPHNS 150 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~~~~ 150 (218)
....++.+||=+||| .|..+..+++......++++|.++..++.+++.-. .+++.. .+.+.. ..+.++.
T Consensus 24 ~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga-----~~~i~~--~~~~~~~~i~~~t~gg 96 (174)
T d1f8fa2 24 LKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-----THVINS--KTQDPVAAIKEITDGG 96 (174)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-----SEEEET--TTSCHHHHHHHHTTSC
T ss_pred hCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC-----eEEEeC--CCcCHHHHHHHHcCCC
Confidence 346788899999997 44566666655333478899999999999987511 122222 221111 1123347
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|+|+-. . .....++.+.++++|+|.+++...
T Consensus 97 ~D~vid~-----~---G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 97 VNFALES-----T---GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEEEEEC-----S---CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred CcEEEEc-----C---CcHHHHHHHHhcccCceEEEEEee
Confidence 9998842 2 123577888999999999988653
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.74 E-value=0.0094 Score=40.56 Aligned_cols=90 Identities=21% Similarity=0.212 Sum_probs=59.5
Q ss_pred EEEEecCCC-c-hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 82 VLLEVGCGV-G-NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 82 ~vLDiGcG~-G-~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
+|+=||||. | .++..+.+.++..+++++|.++..++.+++... +.....+... ......|+|++
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-----~~~~~~~~~~------~~~~~~dlIil--- 68 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-----IDEGTTSIAK------VEDFSPDFVML--- 68 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-----CSEEESCGGG------GGGTCCSEEEE---
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-----chhhhhhhhh------hhccccccccc---
Confidence 577899983 3 345556666666799999999999999987621 1111111111 11125688885
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
..|++....++..+...++++..++-
T Consensus 69 --a~p~~~~~~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 69 --SSPVRTFREIAKKLSYILSEDATVTD 94 (171)
T ss_dssp --CSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred --cCCchhhhhhhhhhhccccccccccc
Confidence 45666778889999999998875554
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.74 E-value=0.0037 Score=42.83 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=64.8
Q ss_pred hhcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc-c---ccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD-I---LNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~---~~~~~~~ 149 (218)
....++.+||=+|||. |..+..+++.....+++++|.++..++.+++.-. . .++..+-.+.. . .......
T Consensus 22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga----~-~~~~~~~~~~~~~~~~~~~~~g~ 96 (171)
T d1pl8a2 22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA----D-LVLQISKESPQEIARKVEGQLGC 96 (171)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----S-EEEECSSCCHHHHHHHHHHHHTS
T ss_pred hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCC----c-ccccccccccccccccccccCCC
Confidence 3456788999999984 4555566655322389999999999999987621 1 11111111100 0 0001123
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
.+|+|+.. . .-...++.+.+++++||.+++.....
T Consensus 97 g~Dvvid~-----~---G~~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 97 KPEVTIEC-----T---GAEASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp CCSEEEEC-----S---CCHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred CceEEEec-----c---CCchhHHHHHHHhcCCCEEEEEecCC
Confidence 68988852 2 12357888999999999999976543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.71 E-value=0.0072 Score=41.18 Aligned_cols=104 Identities=12% Similarity=0.122 Sum_probs=66.6
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc------ccCCC
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI------LNQVP 147 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------~~~~~ 147 (218)
....++.+||-+||| .|..+..+++.. .++++++|.++..++.+++.-. .. .+..+-...+. .....
T Consensus 22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga----~~-~~~~~~~~~~~~~~~~~~~~~~ 95 (170)
T d1e3ja2 22 AGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGA----DV-TLVVDPAKEEESSIIERIRSAI 95 (170)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC----SE-EEECCTTTSCHHHHHHHHHHHS
T ss_pred hCCCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCC----cE-EEeccccccccchhhhhhhccc
Confidence 345678899999998 667777777654 4699999999999999987622 11 11111111100 00111
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
...+|+|+-. . .-...+..+.++++++|.+++.....
T Consensus 96 g~g~D~vid~-----~---g~~~~~~~a~~~~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 96 GDLPNVTIDC-----S---GNEKCITIGINITRTGGTLMLVGMGS 132 (170)
T ss_dssp SSCCSEEEEC-----S---CCHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred ccCCceeeec-----C---CChHHHHHHHHHHhcCCceEEEecCC
Confidence 2368988742 2 12356788889999999999876443
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.69 E-value=0.00034 Score=51.31 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=53.7
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc---cc-------CCCceEEeccCCCcccccCCCCC
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL---YD-------ASKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~---~~-------~~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
..+|||..||.|..+..++..+ ++|+++|-++......+.... .. ..++.+++.|..+. ..-...
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~---L~~~~~ 163 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA---LTDITP 163 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH---STTCSS
T ss_pred CCEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH---HhccCC
Confidence 3489999999999999999887 589999999977655554321 11 13678888886551 222244
Q ss_pred cccEEEechhh
Q psy1107 150 SVDIATLIFVL 160 (218)
Q Consensus 150 ~~D~i~~~~~l 160 (218)
+||+|++--++
T Consensus 164 ~~DvIYlDPMF 174 (250)
T d2oyra1 164 RPQVVYLDPMF 174 (250)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999984433
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.58 E-value=0.00059 Score=46.97 Aligned_cols=103 Identities=14% Similarity=-0.033 Sum_probs=64.2
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+||-+|+| .|..+.++++.. .++++++|.++..++.+++.-. . +++... .+....... .+.+|.
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa----~-~~i~~~-~~~~~~~~~-~~~~d~ 94 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGA----D-HYIATL-EEGDWGEKY-FDTFDL 94 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTC----S-EEEEGG-GTSCHHHHS-CSCEEE
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCC----c-EEeecc-chHHHHHhh-hcccce
Confidence 345688999999998 677777777653 4699999999999999987511 1 222111 011111112 236898
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
++......+ ...+..+.+.|+|+|.+++....
T Consensus 95 vi~~~~~~~------~~~~~~~~~~l~~~G~iv~~G~~ 126 (168)
T d1piwa2 95 IVVCASSLT------DIDFNIMPKAMKVGGRIVSISIP 126 (168)
T ss_dssp EEECCSCST------TCCTTTGGGGEEEEEEEEECCCC
T ss_pred EEEEecCCc------cchHHHHHHHhhccceEEEeccc
Confidence 875321111 01234577899999999987543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.47 E-value=0.0029 Score=47.58 Aligned_cols=48 Identities=10% Similarity=-0.022 Sum_probs=42.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL 124 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~ 124 (218)
....++..|||+-||+|..+..+.+.+ ++.+|+|+++..++.++.++.
T Consensus 246 ~~s~~gdiVlDpF~GSGTT~~AA~~lg--R~~Ig~El~~~y~~~a~~Rl~ 293 (320)
T d1booa_ 246 MLTEPDDLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRFL 293 (320)
T ss_dssp HHCCTTCEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGGS
T ss_pred hcccCCCEEEecCCCCcHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHHH
Confidence 446788999999999999998887776 699999999999999998754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.25 E-value=0.0079 Score=41.13 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=64.2
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc---ccCCCCCccc
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI---LNQVPHNSVD 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~~~~D 152 (218)
..++.+||-+|+| .|..+..+++..-...++++|.++..++.+++... .+++.. .+... ........+|
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga-----~~~i~~--~~~~~~~~~~~~~~~g~d 102 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA-----DHVVDA--RRDPVKQVMELTRGRGVN 102 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC-----SEEEET--TSCHHHHHHHHTTTCCEE
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc-----ceeecC--cccHHHHHHHhhCCCCce
Confidence 4678899999998 44556666654323489999999999999987622 122221 11111 1112234689
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+|+.. . .-...++...+.|+++|.+++...+
T Consensus 103 ~vid~-----~---g~~~~~~~a~~~l~~~G~iv~~G~~ 133 (172)
T d1h2ba2 103 VAMDF-----V---GSQATVDYTPYLLGRMGRLIIVGYG 133 (172)
T ss_dssp EEEES-----S---CCHHHHHHGGGGEEEEEEEEECCCS
T ss_pred EEEEe-----c---CcchHHHHHHHHHhCCCEEEEEeCc
Confidence 88842 2 1234678889999999999986643
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.99 E-value=0.0072 Score=43.84 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=40.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~ 122 (218)
....++..|||.-||+|..+..+.+.+ ++.+|+|+++..++.|+.+
T Consensus 208 ~~s~~gd~VlDpF~GSGTT~~aa~~~~--R~~ig~El~~~y~~~a~~R 253 (256)
T d1g60a_ 208 ASSNPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFV 253 (256)
T ss_dssp HHCCTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHH
T ss_pred HhCCCCCEEEECCCCchHHHHHHHHcC--CeEEEEeCCHHHHHHHHHH
Confidence 335778999999999999998887766 6999999999999999875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.96 E-value=0.0064 Score=41.28 Aligned_cols=100 Identities=11% Similarity=0.078 Sum_probs=61.8
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc---CCCCCc
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN---QVPHNS 150 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~~~~ 150 (218)
....++.+||=+|+| .|..+..+++.. ..+++++|.++..++.+++.-. .+++ |..+.+... ....+.
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga-----~~~i--~~~~~~~~~~~~~~~~g~ 94 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGA-----SLTV--NARQEDPVEAIQRDIGGA 94 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC-----SEEE--ETTTSCHHHHHHHHHSSE
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCc-----cccc--cccchhHHHHHHHhhcCC
Confidence 345678889889997 566677776654 3699999999999999987521 1222 112211111 011223
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+.|++. . -...+..+.+.|+|+|.+++....
T Consensus 95 ~~~i~~~-----~----~~~~~~~~~~~l~~~G~iv~~G~~ 126 (166)
T d1llua2 95 HGVLVTA-----V----SNSAFGQAIGMARRGGTIALVGLP 126 (166)
T ss_dssp EEEEECC-----S----CHHHHHHHHTTEEEEEEEEECCCC
T ss_pred ccccccc-----c----cchHHHHHHHHhcCCcEEEEEEec
Confidence 3444431 1 124677888999999999986543
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.95 E-value=0.032 Score=42.27 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=73.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCC----------------------cccCCCceEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNP----------------------LYDASKMNVFP 134 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~----------------------~~~~~~i~~~~ 134 (218)
..+..+|+-+|||.-.....+....++..++=+|... .++.=+..+ .....+.+.+.
T Consensus 94 ~~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~ 172 (328)
T d1rjda_ 94 ANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNE-SVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA 172 (328)
T ss_dssp HCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHH-HHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred HCCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHH-HHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEe
Confidence 3566799999999987777776666666777777633 322221110 01125678888
Q ss_pred ccCCCccccc-----CCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 135 CDVTEDDILN-----QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 135 ~d~~~~~~~~-----~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|+.+..... .+.....-++++..++.+++++....+++.+.+... +|.+++.+.
T Consensus 173 ~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~ 232 (328)
T d1rjda_ 173 CDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDP 232 (328)
T ss_dssp CCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEE
T ss_pred cCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEecc
Confidence 9988753321 223333458888889999999888999998887764 565666553
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.92 E-value=0.0065 Score=41.77 Aligned_cols=104 Identities=10% Similarity=-0.045 Sum_probs=61.6
Q ss_pred hhcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEe---ccCCCcccccCCCCCc
Q psy1107 75 NQDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFP---CDVTEDDILNQVPHNS 150 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~---~d~~~~~~~~~~~~~~ 150 (218)
....++.+||=+|||. |..+..+++..-..+|+++|.++..++.+++.-. .+++. .|............+.
T Consensus 23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa-----~~~i~~~~~d~~~~~~~~~~~~~G 97 (174)
T d1p0fa2 23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA-----TECLNPKDYDKPIYEVICEKTNGG 97 (174)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC-----SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCC-----cEEEcCCCchhHHHHHHHHhcCCC
Confidence 4467889999999984 4555566655333589999999999999987621 22221 1110000111122346
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhcc-CCeEEEEEecC
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLK-SGGIILFRDYG 191 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk-~gG~li~~~~~ 191 (218)
+|.++-. . .....+......++ ++|.+++....
T Consensus 98 ~d~vid~-----~---g~~~~~~~~~~~~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 98 VDYAVEC-----A---GRIETMMNALQSTYCGSGVTVVLGLA 131 (174)
T ss_dssp BSEEEEC-----S---CCHHHHHHHHHTBCTTTCEEEECCCC
T ss_pred CcEEEEc-----C---CCchHHHHHHHHHHHhcCceEEEEEe
Confidence 8888742 2 12245555666665 56988886654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.91 E-value=0.019 Score=37.13 Aligned_cols=93 Identities=9% Similarity=-0.048 Sum_probs=63.3
Q ss_pred CCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcch
Q psy1107 88 CGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNK 167 (218)
Q Consensus 88 cG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~ 167 (218)
||.|..+..+++......+..+|.++...+.+... .+.++.+|.++.+.+....-.+.+.+++. .+.+.
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~-----~~~d~ 74 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS------GANFVHGDPTRVSDLEKANVRGARAVIVN-----LESDS 74 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT------TCEEEESCTTSHHHHHHTTCTTCSEEEEC-----CSSHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc------CccccccccCCHHHHHHhhhhcCcEEEEe-----ccchh
Confidence 56677888888776556889999999988877643 57888999988765544434467777753 12233
Q ss_pred HHHHHHHHHHhccCCeEEEEEecC
Q psy1107 168 FSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 168 ~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
....+-...+.+.|...++.....
T Consensus 75 ~n~~~~~~~r~~~~~~~iia~~~~ 98 (129)
T d2fy8a1 75 ETIHCILGIRKIDESVRIIAEAER 98 (129)
T ss_dssp HHHHHHHHHHHHCSSSCEEEECSS
T ss_pred hhHHHHHHHHHHCCCceEEEEEcC
Confidence 334445556778888877776544
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.90 E-value=0.033 Score=41.58 Aligned_cols=107 Identities=11% Similarity=0.116 Sum_probs=72.2
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc----CCCceEEeccCCCccccc-----CCCCC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD----ASKMNVFPCDVTEDDILN-----QVPHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~----~~~i~~~~~d~~~~~~~~-----~~~~~ 149 (218)
...+|+.+|||.-.-...+ ...+...++-+|. +.+++.-++..... ..+.+++..|+.+. +.. .+...
T Consensus 89 g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~-~~~~L~~~g~d~~ 165 (297)
T d2uyoa1 89 GIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQD-WPPALRSAGFDPS 165 (297)
T ss_dssp TCCEEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSC-HHHHHHHTTCCTT
T ss_pred CCCeEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccch-HHHHHHhcCCCCC
Confidence 3457777999876555443 2244567888885 66666544443221 24567788888753 211 23333
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
.--++++.+++.+++++....++..+.....||+.+++-
T Consensus 166 ~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 166 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 445778888999999999999999999999999987774
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.83 E-value=0.0064 Score=41.45 Aligned_cols=104 Identities=16% Similarity=0.104 Sum_probs=64.8
Q ss_pred hhcCCCcEEEEecC-C-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc--ccccCCCCCc
Q psy1107 75 NQDVGEGVLLEVGC-G-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED--DILNQVPHNS 150 (218)
Q Consensus 75 ~~~~~~~~vLDiGc-G-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~ 150 (218)
....++.+||=+|| | .|..+..++.......|+++|.++..++.+++.-. . .++..+-.+. ..........
T Consensus 23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga----~-~~i~~~~~~~~~~~~~~~~~~~ 97 (170)
T d1jvba2 23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA----D-YVINASMQDPLAEIRRITESKG 97 (170)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC----S-EEEETTTSCHHHHHHHHTTTSC
T ss_pred hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC----c-eeeccCCcCHHHHHHHHhhccc
Confidence 34567889999997 3 55666666655333589999999999999986411 1 1222111110 0111123346
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+|+|+.. . .-...++.+.+.++|+|.+++....
T Consensus 98 ~d~vid~-----~---g~~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 98 VDAVIDL-----N---NSEKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp EEEEEES-----C---CCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred chhhhcc-----c---ccchHHHhhhhhcccCCEEEEeccc
Confidence 8988853 1 1235667788999999999987544
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.018 Score=39.29 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=64.7
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc----cCCCCC
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~~~ 149 (218)
...++.+||-.|+ |.|..+.++++.. .+++++++.+++..+.+++.-. -.+ .|..+.++. ......
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga-----~~v--i~~~~~~~~~~i~~~t~~~ 96 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGA-----HEV--FNHREVNYIDKIKKYVGEK 96 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-----SEE--EETTSTTHHHHHHHHHCTT
T ss_pred CCCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCc-----ccc--cccccccHHHHhhhhhccC
Confidence 4567889999996 3677788887664 4689999989988888886521 112 122222211 112344
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+|+|+.. . -...++...+.|+|+|.++...
T Consensus 97 g~d~v~d~-----~----g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 97 GIDIIIEM-----L----ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp CEEEEEES-----C----HHHHHHHHHHHEEEEEEEEECC
T ss_pred CceEEeec-----c----cHHHHHHHHhccCCCCEEEEEe
Confidence 69999853 2 1246788889999999999853
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.72 E-value=0.0091 Score=40.44 Aligned_cols=100 Identities=11% Similarity=0.062 Sum_probs=60.6
Q ss_pred hhcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc---cCCCCCc
Q psy1107 75 NQDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL---NQVPHNS 150 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~~~~ 150 (218)
....++.+||=.|+|+ |..+..+++.. ..++++++.++..++.++..-. . .+ .+..+.+.. .....+.
T Consensus 23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~~Ga----~-~~--~~~~~~~~~~~~~~~~~~~ 94 (168)
T d1rjwa2 23 TGAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGA----D-LV--VNPLKEDAAKFMKEKVGGV 94 (168)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTC----S-EE--ECTTTSCHHHHHHHHHSSE
T ss_pred hCCCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhhcCc----c-ee--cccccchhhhhcccccCCC
Confidence 3456788999999974 45555555543 4589999999999999987521 1 11 111111110 0111223
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+|+|++. . -...+..+.+.|+|+|.+++....
T Consensus 95 ~~~v~~~-----~----~~~~~~~a~~~l~~~G~i~~~g~~ 126 (168)
T d1rjwa2 95 HAAVVTA-----V----SKPAFQSAYNSIRRGGACVLVGLP 126 (168)
T ss_dssp EEEEESS-----C----CHHHHHHHHHHEEEEEEEEECCCC
T ss_pred ceEEeec-----C----CHHHHHHHHHHhccCCceEecccc
Confidence 4444431 1 135678899999999999986543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.58 E-value=0.065 Score=39.85 Aligned_cols=74 Identities=12% Similarity=0.029 Sum_probs=53.1
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhh
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVL 160 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l 160 (218)
.+|||+-||.|.+..-+...+-. .+.++|+++.+.+..+.+.. -.++..|+.+.+. ..++ ..|+++.....
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~-~~~a~e~d~~a~~~~~~N~~-----~~~~~~Di~~~~~-~~~~--~~dll~~g~PC 71 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFR-IICANEYDKSIWKTYESNHS-----AKLIKGDISKISS-DEFP--KCDGIIGGPPC 71 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCE-EEEEEECCHHHHHHHHHHCC-----SEEEESCTTTSCG-GGSC--CCSEEEECCCC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCE-EEEEEeCCHHHHHHHHHHCC-----CCCccCChhhCCH-hHcc--cccEEeecccc
Confidence 37999999999999888776642 56799999999988877642 3456788877432 2232 58999886554
Q ss_pred cCC
Q psy1107 161 SAI 163 (218)
Q Consensus 161 ~~~ 163 (218)
..+
T Consensus 72 q~f 74 (324)
T d1dcta_ 72 QSW 74 (324)
T ss_dssp TTT
T ss_pred ccc
Confidence 444
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.52 E-value=0.0064 Score=44.72 Aligned_cols=48 Identities=10% Similarity=0.037 Sum_probs=41.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL 124 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~ 124 (218)
....++..|||.-||+|..+......+ ++.+|+|+++...+.+.+++.
T Consensus 203 ~~s~~gdiVLDpF~GSGTT~~Aa~~lg--R~~ig~El~~~y~~~a~~Ri~ 250 (279)
T d1eg2a_ 203 ALSHPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLT 250 (279)
T ss_dssp HHSCTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHH
T ss_pred hhcCCCCEEEecCCCCcHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHH
Confidence 345688999999999999998888776 699999999999999998754
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.48 E-value=0.07 Score=35.77 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=55.4
Q ss_pred EEEEecCCC-c-hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 82 VLLEVGCGV-G-NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 82 ~vLDiGcG~-G-~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
+|.=||+|. | .++..+.+.+ .+|+++|.++..++.+++.-. +.....+. ... ...|+|+.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g--~~V~~~d~~~~~~~~a~~~~~-----~~~~~~~~------~~~--~~~DiIil--- 63 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRG--HYLIGVSRQQSTCEKAVERQL-----VDEAGQDL------SLL--QTAKIIFL--- 63 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTS-----CSEEESCG------GGG--TTCSEEEE---
T ss_pred EEEEEeecHHHHHHHHHHHHCC--CEEEEEECCchHHHHHHHhhc-----cceeeeec------ccc--cccccccc---
Confidence 567788872 2 3444555544 589999999999988876521 11111111 111 25798885
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
..|++....+++++...++++-+++-
T Consensus 64 --avp~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 64 --CTPIQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp --CSCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred --cCcHhhhhhhhhhhhhhcccccceee
Confidence 34667788999999999999986654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.47 E-value=0.0073 Score=41.62 Aligned_cols=48 Identities=13% Similarity=-0.007 Sum_probs=37.2
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~ 122 (218)
....++.+|+=+||| .|..+..+++..-..+|+++|.+++.++.|++.
T Consensus 25 ~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 25 GKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred hCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence 346778899999998 445566666554335899999999999999986
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0056 Score=46.49 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=51.8
Q ss_pred CcEEEEecCCCchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
+.+|+|+.||.|.+..-+...+-.. -+.++|+++.+.+..+.+.. ...++..|+.+... ..++...+|+++...
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~----~~~~~~~di~~~~~-~~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP----HTQLLAKTIEGITL-EEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----TSCEECSCGGGCCH-HHHHHHCCSEEEECC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC----CCCcccCchhhCCH-hHcCCCCccEEEeec
Confidence 5789999999999988776665333 36789999999998887642 34555666655321 122223689998865
Q ss_pred hhcCCC
Q psy1107 159 VLSAIH 164 (218)
Q Consensus 159 ~l~~~~ 164 (218)
....++
T Consensus 77 PCq~fS 82 (343)
T d1g55a_ 77 PCQPFT 82 (343)
T ss_dssp C-----
T ss_pred cccccc
Confidence 544443
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=95.35 E-value=0.0067 Score=44.21 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=70.4
Q ss_pred CCCcEEEEecCCCchhHHHHhhcC----C------------------------------------ccEEEEEeCCHHHHH
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWS----K------------------------------------ICYIHACDISPRAVN 117 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~----~------------------------------------~~~v~~~D~s~~~~~ 117 (218)
..+..++|..||+|.+.++.+... | ...++|.|+++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 456689999999999988876521 0 024678888888888
Q ss_pred HHH---hCCccc--CCCceEEeccCCCcccccC-CCCCcccEEEechhhcC-C------CcchHHHHHHHHHHhccCCeE
Q psy1107 118 FFK---LNPLYD--ASKMNVFPCDVTEDDILNQ-VPHNSVDIATLIFVLSA-I------HPNKFSTVVKNLFIMLKSGGI 184 (218)
Q Consensus 118 ~~~---~~~~~~--~~~i~~~~~d~~~~~~~~~-~~~~~~D~i~~~~~l~~-~------~~~~~~~~l~~~~~~Lk~gG~ 184 (218)
.++ .++... ...+++...|+++..-... .+....++|+++-.... + +.+....+...+.+.+.....
T Consensus 129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~ 208 (249)
T d1o9ga_ 129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 208 (249)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcE
Confidence 874 333322 2568888999876432111 12345789998543221 1 112356677778888876666
Q ss_pred EEEEe
Q psy1107 185 ILFRD 189 (218)
Q Consensus 185 li~~~ 189 (218)
+++.+
T Consensus 209 ~~it~ 213 (249)
T d1o9ga_ 209 IAVTD 213 (249)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 66654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.15 E-value=0.047 Score=35.26 Aligned_cols=92 Identities=15% Similarity=0.057 Sum_probs=57.4
Q ss_pred EEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 82 VLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
+|+=+|+ |..+..+++.. .+..|+++|.++..++.+... ....++.+|..+...+....-...|.+++.
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~-----~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-- 72 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-----IDALVINGDCTKIKTLEDAGIEDADMYIAV-- 72 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----CSSEEEESCTTSHHHHHHTTTTTCSEEEEC--
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh-----hhhhhccCcccchhhhhhcChhhhhhhccc--
Confidence 4555665 55666565431 235899999999998877653 146788899988766544444467888763
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEE
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGII 185 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~l 185 (218)
.+.+....+.....+.+.+.-.+
T Consensus 73 ---t~~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 73 ---TGKEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp ---CSCHHHHHHHHHHHHHTTCCCEE
T ss_pred ---CCcHHHHHHHHHHHHHcCCceEE
Confidence 22223334445555667776443
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.78 E-value=0.029 Score=42.14 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=52.3
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.+.+|||+-||.|.++.-+...+-. -+.++|+++.+++..+.+.... .+.|+.+... ..+ ..+|+++...
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~-~v~a~e~d~~a~~~~~~N~~~~------~~~Di~~~~~-~~~--~~~Dll~ggp 79 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAE-CVYSNEWDKYAQEVYEMNFGEK------PEGDITQVNE-KTI--PDHDILCAGF 79 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCE-EEEEECCCHHHHHHHHHHHSCC------CBSCGGGSCG-GGS--CCCSEEEEEC
T ss_pred CCCeEEEECccccHHHHHHHHCCCe-EEEEEeCCHHHHHHHHHHCCCC------CcCchhcCch-hhc--ceeeeeeccc
Confidence 5689999999999999888777632 5677999999999988774321 2356655321 122 2589998855
Q ss_pred hhcCC
Q psy1107 159 VLSAI 163 (218)
Q Consensus 159 ~l~~~ 163 (218)
....+
T Consensus 80 PCq~f 84 (327)
T d2c7pa1 80 PCQAF 84 (327)
T ss_dssp CCTTT
T ss_pred ccchh
Confidence 44444
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=94.54 E-value=0.053 Score=34.98 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=52.2
Q ss_pred CCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcc
Q psy1107 89 GVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPN 166 (218)
Q Consensus 89 G~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~ 166 (218)
|.|.++..+++.. .+..|+++|.+++.++.+... ....+.+|.++...+....-...|.+++. ++.+
T Consensus 7 G~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~------~~~~~~gd~~~~~~l~~a~i~~a~~vi~~-----~~~~ 75 (134)
T d2hmva1 7 GLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY------ATHAVIANATEENELLSLGIRNFEYVIVA-----IGAN 75 (134)
T ss_dssp CCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT------CSEEEECCTTCTTHHHHHTGGGCSEEEEC-----CCSC
T ss_pred CCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh------CCcceeeecccchhhhccCCccccEEEEE-----cCch
Confidence 4455655555431 235899999999998887643 23566788887655433322357776652 2322
Q ss_pred hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 167 KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 167 ~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+....+-.+.+.+.+.+.++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~iiar~ 98 (134)
T d2hmva1 76 IQASTLTTLLLKELDIPNIWVKA 98 (134)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHhHHHHHHHHHHcCCCcEEeec
Confidence 33334444444455666776654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.44 E-value=0.061 Score=36.27 Aligned_cols=99 Identities=16% Similarity=0.042 Sum_probs=63.2
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+||=+|+| .|.++.++++.. .++++++|.++...+.+++.-. ..++ |..+... .......+|+
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGa-----d~~i--~~~~~~~-~~~~~~~~D~ 96 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGA-----DEVV--NSRNADE-MAAHLKSFDF 96 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTC-----SEEE--ETTCHHH-HHTTTTCEEE
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCC-----cEEE--ECchhhH-HHHhcCCCce
Confidence 445778899999997 577777777654 4688899999998888876411 1222 2222111 1122246898
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
++..-. . ...+....++++++|.+++...
T Consensus 97 vid~~g---~-----~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 97 ILNTVA---A-----PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp EEECCS---S-----CCCHHHHHTTEEEEEEEEECCC
T ss_pred eeeeee---c-----chhHHHHHHHHhcCCEEEEecc
Confidence 875321 1 1235667789999999998653
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.10 E-value=0.03 Score=38.38 Aligned_cols=100 Identities=12% Similarity=0.187 Sum_probs=62.4
Q ss_pred cCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+||=-|+ |.|..+.++++.. .++++++--+++..+.++..-.. +.+.-+-...........+.+|+|
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~-----~vi~~~~~~~~~~~~~~~~gvD~v 102 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAK-----EVLAREDVMAERIRPLDKQRWAAA 102 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCS-----EEEECC---------CCSCCEEEE
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccc-----eeeecchhHHHHHHHhhccCcCEE
Confidence 345678888875 4668888888764 46899999999999999876221 111111011111123344589988
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+-. +. ...+....+.|++||.+++....
T Consensus 103 id~-----vg----g~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 103 VDP-----VG----GRTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp EEC-----ST----TTTHHHHHHTEEEEEEEEECSCC
T ss_pred EEc-----CC----chhHHHHHHHhCCCceEEEeecc
Confidence 842 21 13577788999999999986543
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.08 E-value=0.074 Score=40.78 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=34.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcC-------CccEEEEEeCCHHHHHHHHhCC
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWS-------KICYIHACDISPRAVNFFKLNP 123 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~-------~~~~v~~~D~s~~~~~~~~~~~ 123 (218)
++..+|||+|+|+|.++..++... ...+++.+|.|+...+.-+...
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l 130 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL 130 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh
Confidence 355789999999999988775531 2347999999998776666543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.89 E-value=0.063 Score=36.60 Aligned_cols=97 Identities=14% Similarity=0.053 Sum_probs=62.3
Q ss_pred hhcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc----cCCCC
Q psy1107 75 NQDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPH 148 (218)
Q Consensus 75 ~~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~~ 148 (218)
....++.+||=.|. |.|..+.++++.. .++++++.-+++..+.+++.-. . +.+ |..+.++. .....
T Consensus 21 ~~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga----~-~vi--~~~~~~~~~~v~~~t~~ 92 (183)
T d1pqwa_ 21 GRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGV----E-YVG--DSRSVDFADEILELTDG 92 (183)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCC----S-EEE--ETTCSTHHHHHHHHTTT
T ss_pred hCCCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccccc----c-ccc--cCCccCHHHHHHHHhCC
Confidence 34567788988773 3677888888663 3688888888888888886521 1 111 22222211 11233
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
..+|+|+.. .. ...++.+.+.|+++|.++..
T Consensus 93 ~g~d~v~d~-----~g----~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 93 YGVDVVLNS-----LA----GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp CCEEEEEEC-----CC----THHHHHHHHTEEEEEEEEEC
T ss_pred CCEEEEEec-----cc----chHHHHHHHHhcCCCEEEEE
Confidence 479999863 21 13667788999999998885
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.70 E-value=0.065 Score=36.35 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=61.7
Q ss_pred hhcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEe-ccCCCc--ccccCCCCCc
Q psy1107 75 NQDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFP-CDVTED--DILNQVPHNS 150 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~-~d~~~~--~~~~~~~~~~ 150 (218)
....++.+||=+|+|. |..+..++...-..+|+++|.++...+.+++.-. .+.+. .+..+. ........+.
T Consensus 24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga-----~~~i~~~~~~~~~~~~~~~~~~~G 98 (176)
T d2jhfa2 24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA-----TECVNPQDYKKPIQEVLTEMSNGG 98 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred hCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC-----eeEEecCCchhHHHHHHHHHhcCC
Confidence 4467889999999974 3455555555444699999999999999987632 11111 111110 0011123347
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEecC
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDYG 191 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~~ 191 (218)
+|+++-. . .....++.+...++++ |.+++....
T Consensus 99 ~D~vid~-----~---G~~~~~~~a~~~~~~~~g~~~~~~~~ 132 (176)
T d2jhfa2 99 VDFSFEV-----I---GRLDTMVTALSCCQEAYGVSVIVGVP 132 (176)
T ss_dssp BSEEEEC-----S---CCHHHHHHHHHHBCTTTCEEEECSCC
T ss_pred CCEEEec-----C---CchhHHHHHHHHHhcCCcceEEecCC
Confidence 8988853 2 1234566677788775 666665543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.65 E-value=0.11 Score=35.02 Aligned_cols=102 Identities=15% Similarity=0.004 Sum_probs=62.0
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc---cccCCCCCc
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD---ILNQVPHNS 150 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~~~~ 150 (218)
....++.+||=.||| .|..+.++++..-...|+++|.++...+.+++.-. .+++...-.... .......+.
T Consensus 24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa-----~~~i~~~~~~~~~~~~~~~~~~~g 98 (176)
T d2fzwa2 24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA-----TECINPQDFSKPIQEVLIEMTDGG 98 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC-----SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred hCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC-----cEEEeCCchhhHHHHHHHHHcCCC
Confidence 346788899999987 55666666665333589999999999999987521 112111100000 001112346
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|+|+-. . .....++.+..++++||.+++..
T Consensus 99 ~D~vid~-----~---G~~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 99 VDYSFEC-----I---GNVKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp BSEEEEC-----S---CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred CcEeeec-----C---CCHHHHHHHHHhhcCCceeEEEE
Confidence 8999852 2 12356778889999987766543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.20 E-value=0.092 Score=37.81 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=56.9
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC------CCCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ------VPHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~------~~~~ 149 (218)
.++.+|=-|++.| ..+..+++.+ .+|+..|.+.+.++.........+.++.++.+|+++.+-... -..+
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G--~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLK--SKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG 83 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 4667787788777 4556666666 589999999988887776655566789999999998642111 1224
Q ss_pred cccEEEechhhc
Q psy1107 150 SVDIATLIFVLS 161 (218)
Q Consensus 150 ~~D~i~~~~~l~ 161 (218)
..|+++.+..+.
T Consensus 84 ~idilinnag~~ 95 (244)
T d1yb1a_ 84 DVSILVNNAGVV 95 (244)
T ss_dssp CCSEEEECCCCC
T ss_pred CCceeEeecccc
Confidence 689888865444
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.53 E-value=0.19 Score=36.28 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=52.1
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc--CCCceEEeccCCCcccccC----C--C
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD--ASKMNVFPCDVTEDDILNQ----V--P 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~----~--~ 147 (218)
+++++|=.|++.| ..+..+++.+ ++|+.++.++..++.+.+..... +.++.++.+|+.+.+-... . .
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G--~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQG--LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 5778899998877 3344455555 58999999998877766543332 2468888999988642111 0 1
Q ss_pred CCcccEEEechh
Q psy1107 148 HNSVDIATLIFV 159 (218)
Q Consensus 148 ~~~~D~i~~~~~ 159 (218)
-+..|+++.+..
T Consensus 87 ~g~iD~lVnnAg 98 (257)
T d1xg5a_ 87 HSGVDICINNAG 98 (257)
T ss_dssp HCCCSEEEECCC
T ss_pred cCCCCEEEeccc
Confidence 156898887543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=92.50 E-value=0.13 Score=35.07 Aligned_cols=101 Identities=13% Similarity=0.111 Sum_probs=64.7
Q ss_pred hhcCCCcEEEEecCC--CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc-ccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCG--VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED-DILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG--~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~~~ 151 (218)
....++.+||=.|++ .|..+.++++.. .++++++.-+++..+.++..-. ...+...+-... ..........+
T Consensus 25 ~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~Ga----~~vi~~~~~~~~~~~~~~~~~~Gv 99 (182)
T d1v3va2 25 CGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGF----DAAFNYKTVNSLEEALKKASPDGY 99 (182)
T ss_dssp TCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC----SEEEETTSCSCHHHHHHHHCTTCE
T ss_pred hCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhhhh----hhhcccccccHHHHHHHHhhcCCC
Confidence 445678899988875 457777777764 3699999999999888887621 111111111100 01112233469
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|+. ... ...++...+.|+++|.+++..
T Consensus 100 d~v~D-----~vG----~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 100 DCYFD-----NVG----GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp EEEEE-----SSC----HHHHHHHGGGEEEEEEEEECC
T ss_pred ceeEE-----ecC----chhhhhhhhhccCCCeEEeec
Confidence 99884 332 347788999999999988853
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=92.38 E-value=0.014 Score=39.63 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=60.0
Q ss_pred CCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+|+=+|+| .|..++..+... .+.|+++|.+...++..+.... .++.....+-.. +...+ ...|+|+..
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~---~~~~~~~~~~~~--l~~~~--~~aDivI~a 102 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG---SRVELLYSNSAE--IETAV--AEADLLIGA 102 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG---GGSEEEECCHHH--HHHHH--HTCSEEEEC
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhc---ccceeehhhhhh--HHHhh--ccCcEEEEe
Confidence 67899999999 566666666553 3699999999999988876532 233333222111 11111 257999985
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEE
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li 186 (218)
..+..-. -+.-+-+.+.+.+|||..++
T Consensus 103 alipG~~--aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 103 VLVPGRR--APILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp CCCTTSS--CCCCBCHHHHTTSCTTCEEE
T ss_pred eecCCcc--cCeeecHHHHhhcCCCcEEE
Confidence 4322221 12223467888999998443
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=91.98 E-value=0.1 Score=35.31 Aligned_cols=97 Identities=9% Similarity=-0.024 Sum_probs=63.3
Q ss_pred hcCCCcEEEEecCC--CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CCCCC
Q psy1107 76 QDVGEGVLLEVGCG--VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGcG--~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~~~ 149 (218)
...++.+||=.|+| .|..+.++++.. .+++++++.++...+.+++.-. . ++ .|..+.++.. .....
T Consensus 25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~lGa----~-~v--i~~~~~d~~~~v~~~t~g~ 96 (179)
T d1qora2 25 EIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGA----W-QV--INYREEDLVERLKEITGGK 96 (179)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTC----S-EE--EETTTSCHHHHHHHHTTTC
T ss_pred CCCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhcCC----e-EE--EECCCCCHHHHHHHHhCCC
Confidence 45678899888665 567888887764 3699999999999999886521 1 22 2333322211 12334
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+|+|+.. ... ..+......++++|.+++..
T Consensus 97 g~d~v~d~-----~g~----~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 97 KVRVVYDS-----VGR----DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp CEEEEEEC-----SCG----GGHHHHHHTEEEEEEEEECC
T ss_pred CeEEEEeC-----ccH----HHHHHHHHHHhcCCeeeecc
Confidence 68988753 221 24567888999999887754
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.80 E-value=0.31 Score=32.66 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=58.5
Q ss_pred hhcCCCcEEEEecCCCchh-HHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc---ccccCCCCCc
Q psy1107 75 NQDVGEGVLLEVGCGVGNF-IFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED---DILNQVPHNS 150 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~-~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~~~~ 150 (218)
....++.+||=+|+|.+.. +..++...-...|+++|.++..++.+++.-. .+++...-.+. ..........
T Consensus 24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA-----d~~in~~~~~~~~~~~~~~~~~~G 98 (175)
T d1cdoa2 24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA-----TDFVNPNDHSEPISQVLSKMTNGG 98 (175)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----CEEECGGGCSSCHHHHHHHHHTSC
T ss_pred hCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC-----cEEEcCCCcchhHHHHHHhhccCC
Confidence 4567889999999987544 4444444333589999999999999987621 12221110000 0011112246
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEec
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDY 190 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~ 190 (218)
+|+++-. . -....+..+..+++++ |.+++...
T Consensus 99 ~d~vid~-----~---G~~~~~~~a~~~~~~g~~~~~~~g~ 131 (175)
T d1cdoa2 99 VDFSLEC-----V---GNVGVMRNALESCLKGWGVSVLVGW 131 (175)
T ss_dssp BSEEEEC-----S---CCHHHHHHHHHTBCTTTCEEEECSC
T ss_pred cceeeee-----c---CCHHHHHHHHHHhhCCCcceeEEEe
Confidence 8888742 2 1234556666776665 55555443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=91.75 E-value=0.025 Score=38.47 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=59.7
Q ss_pred hhcCCCcEEEEecC-C-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGC-G-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGc-G-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+||=.|. | .|..+.++++.. .+++++++.++...+.+++.-. . +.+ |..+... .......+|
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~lGa----~-~~i--~~~~~~~-~~~~~~g~D 93 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGA----E-EAA--TYAEVPE-RAKAWGGLD 93 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTC----S-EEE--EGGGHHH-HHHHTTSEE
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccccccc----c-eee--ehhhhhh-hhhcccccc
Confidence 34567889998884 3 467777787764 3699999999988888887521 1 111 2111100 111123689
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|+-. .. ..+....+.|+|+|.+++..
T Consensus 94 ~v~d~-----~G-----~~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 94 LVLEV-----RG-----KEVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp EEEEC-----SC-----TTHHHHHTTEEEEEEEEEC-
T ss_pred ccccc-----cc-----hhHHHHHHHHhcCCcEEEEe
Confidence 88742 11 12466788999999998753
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.95 E-value=0.14 Score=37.00 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=47.9
Q ss_pred EEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C--CCCcccE
Q psy1107 83 LLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--PHNSVDI 153 (218)
Q Consensus 83 vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~~~~~D~ 153 (218)
+|=-|++.| ..+..+++.+ ++|+.+|.++..++.+.+.....+.++.++.+|+++.+-... . .-++.|+
T Consensus 4 alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 81 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKDG--FAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV 81 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEcCCccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence 455666655 2344444445 689999999988877766555455688899999988642111 0 1157898
Q ss_pred EEech
Q psy1107 154 ATLIF 158 (218)
Q Consensus 154 i~~~~ 158 (218)
++.+.
T Consensus 82 lVnnA 86 (255)
T d1gega_ 82 IVNNA 86 (255)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 88754
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.66 E-value=0.34 Score=34.76 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=51.0
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCC-cccCCCceEEeccCCCcccccC----C--CC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNP-LYDASKMNVFPCDVTEDDILNQ----V--PH 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~-~~~~~~i~~~~~d~~~~~~~~~----~--~~ 148 (218)
+++++|=-|++.| ..+..+++.+ ++|+.+|.+.+.++.+.... ...+.++.++.+|+.+.+-... . .-
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAG--CSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678888888766 3345555555 58999999987766554432 3345678889999987532111 0 11
Q ss_pred CcccEEEechh
Q psy1107 149 NSVDIATLIFV 159 (218)
Q Consensus 149 ~~~D~i~~~~~ 159 (218)
++.|+++.+..
T Consensus 82 g~iDiLVnnAG 92 (251)
T d1vl8a_ 82 GKLDTVVNAAG 92 (251)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 47899887543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.11 E-value=0.26 Score=35.82 Aligned_cols=109 Identities=8% Similarity=-0.060 Sum_probs=65.7
Q ss_pred CcEEEEecCCCchhHHH----HhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CC--CCC
Q psy1107 80 EGVLLEVGCGVGNFIFP----LLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV--PHN 149 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~----~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~--~~~ 149 (218)
+++|.=|-.|++.++.. +++.+ ...|+..+-+...++.+.+.....+.++.++.+|+.+.+-.. .. ..+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~-g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLF-SGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHS-SSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 34554343344444433 44432 358999999998887776665555568899999998854211 11 115
Q ss_pred cccEEEechhhcCCCc------chHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHP------NKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~------~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
..|+++.+..+....+ +++. .+.+.+...|+++|.++...
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 7999998764432211 1222 34455677888899877654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=89.99 E-value=0.21 Score=35.99 Aligned_cols=76 Identities=14% Similarity=0.066 Sum_probs=49.1
Q ss_pred cEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC------CCCCcc
Q psy1107 81 GVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ------VPHNSV 151 (218)
Q Consensus 81 ~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~------~~~~~~ 151 (218)
+.+|=-|++.| ..+..+++.+ ++|+.+|.++..++.+.+.....+.++.++.+|+.+.+-... -.-++.
T Consensus 3 KValITGas~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 80 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEG--LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV 80 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 44566666555 2344444445 689999999988877766555555688999999988642111 012578
Q ss_pred cEEEech
Q psy1107 152 DIATLIF 158 (218)
Q Consensus 152 D~i~~~~ 158 (218)
|+++.+.
T Consensus 81 DilVnnA 87 (257)
T d2rhca1 81 DVLVNNA 87 (257)
T ss_dssp SEEEECC
T ss_pred CEEEecc
Confidence 9888754
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=88.89 E-value=0.26 Score=38.08 Aligned_cols=47 Identities=9% Similarity=0.095 Sum_probs=37.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCC--ccEEEEEeCCHHHHHHHHhCC
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSK--ICYIHACDISPRAVNFFKLNP 123 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~--~~~v~~~D~s~~~~~~~~~~~ 123 (218)
..+...++|+|+-.|..+..++...+ ..+|+++|+++...+.++.+.
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi 258 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVL 258 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHH
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHH
Confidence 45678999999999998887765432 358999999999988887653
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=88.72 E-value=0.24 Score=33.85 Aligned_cols=45 Identities=18% Similarity=0.102 Sum_probs=35.0
Q ss_pred CCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCC
Q psy1107 78 VGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNP 123 (218)
Q Consensus 78 ~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~ 123 (218)
-++.+|+=||+|. |..+...+... .+.|+++|.++..++..+...
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~ 72 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLG 72 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTT
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhh
Confidence 3678999999995 55565555443 469999999999999998764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=88.36 E-value=0.5 Score=34.01 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=53.3
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C--CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~~~ 149 (218)
+++++|=-|.+.| ..+..+++.+ ++|+.+|.+++.++.+.+.....+.++..+.+|+.+.+-... . .-+
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEG--TAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG 81 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5678887787766 2455555555 589999999988887776655556688999999987532110 0 114
Q ss_pred cccEEEech
Q psy1107 150 SVDIATLIF 158 (218)
Q Consensus 150 ~~D~i~~~~ 158 (218)
..|+++.+.
T Consensus 82 ~iDilVnna 90 (260)
T d1zema1 82 KIDFLFNNA 90 (260)
T ss_dssp CCCEEEECC
T ss_pred CCCeehhhh
Confidence 689888653
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=88.27 E-value=2.4 Score=29.82 Aligned_cols=106 Identities=11% Similarity=0.091 Sum_probs=64.4
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----CC--CC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----VP--HN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~~--~~ 149 (218)
.++++|=.|++.| ..+..+++.+ ++|+..+.+...++...+.. +.++.++.+|+.+..-... .. -+
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dls~~~~i~~~~~~i~~~~g 78 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREG--ASLVAVDREERLLAEAVAAL---EAEAIAVVADVSDPKAVEAVFAEALEEFG 78 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTC---CSSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHc---CCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4678888888765 3344444444 69999999998877766653 4578889999987532111 11 15
Q ss_pred cccEEEechhhcCCC------cchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIH------PNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~------~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.|+++.+....... .+++. .+.+.+...++.++.+++..
T Consensus 79 ~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~s 135 (241)
T d2a4ka1 79 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTG 135 (241)
T ss_dssp CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecc
Confidence 789888865433222 22222 23344456666666665543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=88.11 E-value=1 Score=29.92 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=56.5
Q ss_pred cEEEEecCCCchh--HHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc---cC-CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 81 GVLLEVGCGVGNF--IFPLLSWSKICYIHACDISPRAVNFFKLNPLY---DA-SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 81 ~~vLDiGcG~G~~--~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~---~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
++|.=+|+|.... +..+++.+ .+|+.+|.++..++..+..-.. .+ ............ +..... ...|+|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~--~~aD~i 76 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTS-DIGLAV--KDADVI 76 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEES-CHHHHH--TTCSEE
T ss_pred CEEEEECccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhh-hhHhHh--cCCCEE
Confidence 4777889985433 33344444 5899999999888877654211 11 111111110000 000111 257888
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
++. .+......+++++...++++-.+++.
T Consensus 77 ii~-----v~~~~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 77 LIV-----VPAIHHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp EEC-----SCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred EEE-----EchhHHHHHHHHhhhccCCCCEEEEe
Confidence 863 34456788999999999999876654
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=87.90 E-value=0.21 Score=33.58 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=61.3
Q ss_pred CCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 79 GEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 79 ~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
++..||=-|+ |.|..+.++++.. .++++++.-+++..+.++..-. ..+ +..-|..... ......+.+|+|+-
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~lGa---d~v-i~~~~~~~~~-~~~~~~~gvd~vid 96 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGA---SEV-ISREDVYDGT-LKALSKQQWQGAVD 96 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTC---SEE-EEHHHHCSSC-CCSSCCCCEEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhhcc---cce-Eeccchhchh-hhcccCCCceEEEe
Confidence 3445766554 4778888888774 3699999998888888876521 111 1111221111 12233457998874
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+. ...+....+.|+++|.+++....
T Consensus 97 -----~vg----g~~~~~~~~~l~~~G~iv~~G~~ 122 (167)
T d1tt7a2 97 -----PVG----GKQLASLLSKIQYGGSVAVSGLT 122 (167)
T ss_dssp -----SCC----THHHHHHHTTEEEEEEEEECCCS
T ss_pred -----cCc----HHHHHHHHHHhccCceEEEeecc
Confidence 232 24678889999999999886533
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=87.86 E-value=0.78 Score=32.69 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=46.1
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CC--CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV--PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~--~~~ 149 (218)
+++++|=-|++.| ..+..+++.+ ++|+..|.+++..+.++.. +..++.+|+.+.+-.. .. .-+
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~~~G 75 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFAREG--ALVALCDLRPEGKEVAEAI------GGAFFQVDLEDERERVRFVEEAAYALG 75 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSTTHHHHHHHH------TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHc------CCeEEEEeCCCHHHHHHHHHHHHHhcC
Confidence 5678888887666 3344555555 5899999998877766542 3467789998753111 00 115
Q ss_pred cccEEEech
Q psy1107 150 SVDIATLIF 158 (218)
Q Consensus 150 ~~D~i~~~~ 158 (218)
+.|+++.+.
T Consensus 76 ~iDiLVnnA 84 (248)
T d2d1ya1 76 RVDVLVNNA 84 (248)
T ss_dssp CCCEEEECC
T ss_pred CCCeEEEeC
Confidence 789888754
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=87.81 E-value=0.82 Score=32.67 Aligned_cols=76 Identities=16% Similarity=0.081 Sum_probs=48.4
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C--CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~~~ 149 (218)
+++++|=-|++.| ..+..+++.+ ++|+.+|.++..++.+.+. .+.+..++.+|+.+..-... . .-+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G--a~V~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 79 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEG--AKVAFSDINEAAGQQLAAE---LGERSMFVRHDVSSEADWTLVMAAVQRRLG 79 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHH---HCTTEEEECCCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---hCCCeEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4677887776665 3344444445 6899999999887766543 24567788899887532111 0 115
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
..|+++.+..
T Consensus 80 ~iDilVnnAG 89 (253)
T d1hxha_ 80 TLNVLVNNAG 89 (253)
T ss_dssp SCCEEEECCC
T ss_pred CCCeEEeccc
Confidence 6898887553
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=87.73 E-value=0.59 Score=30.49 Aligned_cols=101 Identities=8% Similarity=-0.001 Sum_probs=57.1
Q ss_pred EEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHH-HHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 82 VLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVN-FFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~-~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.|+=+|+| ..+..+++. ..+..++.+|.++.... .+... ....+.++.+|..+...+....-...|.+++..
T Consensus 5 HiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~---~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 5 HFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQR---LGDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHH---HCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred EEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHh---hcCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 46666664 455445433 12348899998875432 22221 124688899999887654433334678887631
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
+.+......-...+-+.|...+++.....
T Consensus 80 -----~~d~~n~~~~~~~r~~~~~~~iia~~~~~ 108 (153)
T d1id1a_ 80 -----DNDADNAFVVLSAKDMSSDVKTVLAVSDS 108 (153)
T ss_dssp -----SCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred -----ccHHHHHHHHHHHHHhCCCCceEEEEcCH
Confidence 22233333344556667887777765443
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.68 E-value=0.88 Score=32.78 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=63.0
Q ss_pred CCcEEEEecCCCch---hHHHHhhcCCccEEEEEeCC-HHHHHHHHhCCcccCCCceEEeccCCCccccc----CC--CC
Q psy1107 79 GEGVLLEVGCGVGN---FIFPLLSWSKICYIHACDIS-PRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV--PH 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G~---~~~~~~~~~~~~~v~~~D~s-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~--~~ 148 (218)
+++++|=-|++.|. .+..+++.+ ++|+..+.+ .+.++.+.......+.++.+..+|+.+..-.. .. .-
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~G--a~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 94 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRG--CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF 94 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence 46788888887662 455555555 588888876 44444444433444567889999998753211 01 11
Q ss_pred CcccEEEechhhcCC------CcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSAI------HPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~------~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
+..|+++.+...... +++++. .+.+.+...|+.+|..++..
T Consensus 95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 467888875433322 122222 33455667777777666643
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.44 E-value=0.16 Score=36.77 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=35.8
Q ss_pred eEEeccCCCcccccCCCCCcccEEEechhhcC--------CC-cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 131 NVFPCDVTEDDILNQVPHNSVDIATLIFVLSA--------IH-PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 131 ~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~--------~~-~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.|+.+|..+. +..++++++|+|+..-.... .. .+.....+.++.++|||+|.+++..
T Consensus 6 ~~~~~D~le~--l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 6 VYDVCDCLDT--LAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEEECCHHHH--HHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHH--HhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 3445565442 24567788999987432110 00 0224677889999999999998854
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=87.34 E-value=0.41 Score=34.32 Aligned_cols=78 Identities=9% Similarity=0.025 Sum_probs=50.3
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C--CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~~~ 149 (218)
+++++|=-|++.| ..+..+++.+ ++|+.+|.+++.++.+.+... .+.++.++.+|+.+.+-... . .-+
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEG--AKVMITGRHSDVGEKAAKSVG-TPDQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHC-CTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhC-CCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4667777776665 2344445545 689999999988777665543 23578899999988642110 0 115
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
..|+++.+..
T Consensus 82 ~iDiLVnnAg 91 (251)
T d1zk4a1 82 PVSTLVNNAG 91 (251)
T ss_dssp SCCEEEECCC
T ss_pred CceEEEeccc
Confidence 7898887543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.14 E-value=0.83 Score=32.44 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=50.3
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC--CCCCcccE
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ--VPHNSVDI 153 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~--~~~~~~D~ 153 (218)
.++++|=.|++.| ..+..+++.+ .+|+.+|.++..++.+.+.. ..+..+.+|+.+.+-... -.-++.|+
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G--~~V~~~~r~~~~l~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~g~iDi 79 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATG--ARVVAVSRTQADLDSLVREC----PGIEPVCVDLGDWEATERALGSVGPVDL 79 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhc----CCCeEEEEeCCCHHHHHHHHHHhCCceE
Confidence 5778888888776 3445555555 58999999998877665432 357788899987532111 11257899
Q ss_pred EEechh
Q psy1107 154 ATLIFV 159 (218)
Q Consensus 154 i~~~~~ 159 (218)
++.+..
T Consensus 80 lVnnAg 85 (244)
T d1pr9a_ 80 LVNNAA 85 (244)
T ss_dssp EEECCC
T ss_pred EEeccc
Confidence 887543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.06 E-value=0.38 Score=34.52 Aligned_cols=82 Identities=22% Similarity=0.184 Sum_probs=51.6
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc--cCCCceEEeccCCCcccccC----C--C
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY--DASKMNVFPCDVTEDDILNQ----V--P 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~----~--~ 147 (218)
+++++|=-|++.| ..+..+++.+ ++|+.+|.+.+.++.+...... .+.++.++.+|+++.+-... . .
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKG--AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 3567777787766 2344444445 6899999998877766554322 23578889999988532111 0 1
Q ss_pred CCcccEEEechhhcC
Q psy1107 148 HNSVDIATLIFVLSA 162 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~ 162 (218)
-++.|+++.+.....
T Consensus 80 ~G~iDilVnnAg~~~ 94 (254)
T d2gdza1 80 FGRLDILVNNAGVNN 94 (254)
T ss_dssp HSCCCEEEECCCCCC
T ss_pred cCCcCeecccccccc
Confidence 157899888665443
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=87.04 E-value=0.63 Score=31.43 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=59.2
Q ss_pred CcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
+..||=.|. |.|..++++++.. .++++++.-+++..+.++..-. .+++.-+ +.+....+....+|.|+-
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~lGa-----d~vi~~~--~~~~~~~l~~~~~~~vvD- 102 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLGA-----SRVLPRD--EFAESRPLEKQVWAGAID- 102 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTE-----EEEEEGG--GSSSCCSSCCCCEEEEEE-
T ss_pred CCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhhcc-----ccccccc--cHHHHHHHHhhcCCeeEE-
Confidence 346665553 3667888888764 4699999999998888876421 1222221 111122344456787752
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+. ...+....+.|+++|.++....
T Consensus 103 ----~Vg----g~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 103 ----TVG----DKVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp ----SSC----HHHHHHHHHTEEEEEEEEECCC
T ss_pred ----Ecc----hHHHHHHHHHhccccceEeecc
Confidence 332 2467888999999999998653
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.95 E-value=0.56 Score=33.64 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=62.2
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEE-eCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC------CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHAC-DISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ------VPH 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~-D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~------~~~ 148 (218)
.++++|=.|++.| ..+..+++.+ ++|+.. .-+...++.+.......+.++.++.+|+.+..-... ...
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G--~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRRG--ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 82 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence 4677886665554 4444555555 467654 566666666666555556789999999987531110 112
Q ss_pred CcccEEEechhhcCCCc------chHH-----------HHHHHHHHhccCCeEEEEE
Q psy1107 149 NSVDIATLIFVLSAIHP------NKFS-----------TVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~------~~~~-----------~~l~~~~~~Lk~gG~li~~ 188 (218)
+..|+++.+....+..+ +.+. .+.+.+...++.+|..++.
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 46888888654433321 2222 3445556666666665554
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=86.88 E-value=0.38 Score=34.65 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=51.1
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc--cCCCceEEeccCCCcccccC----C--C
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY--DASKMNVFPCDVTEDDILNQ----V--P 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~----~--~ 147 (218)
+++++|=-|++.| ..+..+++.+ ++|+.+|.+++.++.+...... .+.++.++.+|+.+.+-... . .
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEG--AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 4667888888776 3455566655 6899999999887766554322 23578889999988632111 0 1
Q ss_pred CCcccEEEech
Q psy1107 148 HNSVDIATLIF 158 (218)
Q Consensus 148 ~~~~D~i~~~~ 158 (218)
-+..|+++.+.
T Consensus 81 ~G~iDiLVnnA 91 (258)
T d1iy8a_ 81 FGRIDGFFNNA 91 (258)
T ss_dssp HSCCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 15689888754
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=86.52 E-value=0.9 Score=32.22 Aligned_cols=73 Identities=14% Similarity=0.098 Sum_probs=48.5
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C--CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~~~ 149 (218)
+++++|=-|++.| ..+..+++.+ ++|+.+|.++..++.+.+.. +..++.+|+.+.+-... . .-+
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G--~~V~~~~r~~~~l~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g 76 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEG--ARLVACDIEEGPLREAAEAV-----GAHPVVMDVADPASVERGFAEALAHLG 76 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTT-----TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHc-----CCeEEEEecCCHHHHHHHHHHHHHhcC
Confidence 4678888888776 2344444545 58999999998888776643 46778899987532111 0 114
Q ss_pred cccEEEech
Q psy1107 150 SVDIATLIF 158 (218)
Q Consensus 150 ~~D~i~~~~ 158 (218)
+.|+++.+.
T Consensus 77 ~iDilVnnA 85 (242)
T d1ulsa_ 77 RLDGVVHYA 85 (242)
T ss_dssp SCCEEEECC
T ss_pred CceEEEECC
Confidence 689888754
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=86.16 E-value=0.92 Score=32.17 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=48.3
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC------CCCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ------VPHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~------~~~~ 149 (218)
+++++|=-|++.| ..+..+++.+ ++|+.+|.++..++.+.+.. +.+...+.+|+.+.+-... -.-+
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G--~~Vv~~~r~~~~l~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 77 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARG--AKVIGTATSENGAQAISDYL---GANGKGLMLNVTDPASIESVLEKIRAEFG 77 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHh---CCCCcEEEEEecCHHHhhhhhhhhhcccC
Confidence 4667777777665 3344445545 58999999998877665432 3467788999987532110 0124
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
..|+++.+..
T Consensus 78 ~iDilVnnAg 87 (243)
T d1q7ba_ 78 EVDILVNNAG 87 (243)
T ss_dssp SCSEEEECCC
T ss_pred Ccceehhhhh
Confidence 7898887543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=86.01 E-value=0.81 Score=32.65 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=52.2
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC------CCCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ------VPHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~------~~~~ 149 (218)
+++.+|=.|++.| ..+..+++.+ ++|+.+|.++..++.+.+.....+.++.++.+|+++.+-... -.-+
T Consensus 9 enKvalITGas~GIG~a~a~~la~~G--a~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSV--SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTS--SEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4667777787665 2233444444 589999999988877776655555688999999988632110 0125
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
..|+++.+..
T Consensus 87 ~iDilvnnag 96 (251)
T d2c07a1 87 NVDILVNNAG 96 (251)
T ss_dssp CCCEEEECCC
T ss_pred Cceeeeeccc
Confidence 7898887553
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.00 E-value=1.1 Score=30.16 Aligned_cols=92 Identities=5% Similarity=0.017 Sum_probs=54.9
Q ss_pred cEEEEec--CCCchhHHHHhhcCCccEEEEEeCCHHHHH-HHHhCCcccCCCceEEeccCCCcccc---cCCCCCcccEE
Q psy1107 81 GVLLEVG--CGVGNFIFPLLSWSKICYIHACDISPRAVN-FFKLNPLYDASKMNVFPCDVTEDDIL---NQVPHNSVDIA 154 (218)
Q Consensus 81 ~~vLDiG--cG~G~~~~~~~~~~~~~~v~~~D~s~~~~~-~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~~~~~D~i 154 (218)
.+||=.| .|.|..+.++++..-...++++..+++... .++..-. ..+ .|..+.+.. .......+|+|
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga-----d~v--i~~~~~~~~~~~~~~~~~GvDvv 104 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF-----DAA--VNYKTGNVAEQLREACPGGVDVY 104 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC-----SEE--EETTSSCHHHHHHHHCTTCEEEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc-----eEE--eeccchhHHHHHHHHhccCceEE
Confidence 6788776 468899999998643236777776665544 3333311 112 122222111 11112469999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+- ... ...+....+.|+++|.+++.
T Consensus 105 ~D-----~vG----g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 105 FD-----NVG----GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp EE-----SSC----HHHHHHHHTTEEEEEEEEEC
T ss_pred Ee-----cCC----chhHHHHhhhccccccEEEe
Confidence 84 231 34678889999999999874
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=85.66 E-value=0.8 Score=32.84 Aligned_cols=78 Identities=12% Similarity=0.059 Sum_probs=53.7
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc-------CCCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN-------QVPH 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-------~~~~ 148 (218)
+++++|=.|+..| ..+..+++.+ ++|+.++.++..++.+.+.....+.+++++.+|+.+.+-.. ....
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G--~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 82 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLG--ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD 82 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 5778888888766 3344555555 58999999998877777665555677889999998864211 1112
Q ss_pred CcccEEEech
Q psy1107 149 NSVDIATLIF 158 (218)
Q Consensus 149 ~~~D~i~~~~ 158 (218)
+..|+++.+.
T Consensus 83 g~idilinna 92 (258)
T d1ae1a_ 83 GKLNILVNNA 92 (258)
T ss_dssp SCCCEEEECC
T ss_pred CCcEEEeccc
Confidence 4678888644
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=85.02 E-value=0.73 Score=33.01 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=51.5
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C--CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~~~ 149 (218)
+++++|=-|++.| ..+..+++.+ ++|+.+|.+++.++.+.+.....+.++.++.+|+.+.+-... . .-+
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAG--ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTT--CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5677787766655 2233444444 689999999988777766555556688899999988532111 0 014
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
..|+++.+..
T Consensus 88 ~iDilvnnAG 97 (255)
T d1fmca_ 88 KVDILVNNAG 97 (255)
T ss_dssp SCCEEEECCC
T ss_pred CCCEeeeCCc
Confidence 6898887543
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.59 E-value=0.8 Score=32.77 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=50.2
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC------CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV------PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~------~~~ 149 (218)
+++++|=-|++.| ..+..+++.+ ++|+.+|.+.+.++.+... .+.++.++.+|+++.+-...+ .-+
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~---~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 78 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREG--ARVAIADINLEAARATAAE---IGPAACAIALDVTDQASIDRCVAELLDRWG 78 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTT--EEEEEEESCHHHHHHHHHH---HCTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---hCCceEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 5677888887766 3344455545 6899999998877666543 346788899999886421110 115
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
..|+++.+..
T Consensus 79 ~iDilVnnAg 88 (256)
T d1k2wa_ 79 SIDILVNNAA 88 (256)
T ss_dssp CCCEEEECCC
T ss_pred CccEEEeecc
Confidence 7898887554
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.58 E-value=1.3 Score=31.27 Aligned_cols=74 Identities=14% Similarity=0.061 Sum_probs=48.2
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-CCCcccE
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-PHNSVDI 153 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-~~~~~D~ 153 (218)
+++++|=-|++.| ..+..+++.+ ++|+.+|.++..++.+.+.. ..+..+.+|+.+.+.... + .-++.|+
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~g~iDi 77 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASG--AKVVAVTRTNSDLVSLAKEC----PGIEPVCVDLGDWDATEKALGGIGPVDL 77 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhc----CCCeEEEEeCCCHHHHHHHHHHcCCCeE
Confidence 5678888887766 2344455545 68999999987776665432 357788899987532111 1 1157899
Q ss_pred EEech
Q psy1107 154 ATLIF 158 (218)
Q Consensus 154 i~~~~ 158 (218)
++.+.
T Consensus 78 lVnnA 82 (242)
T d1cyda_ 78 LVNNA 82 (242)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 88754
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=84.11 E-value=0.22 Score=35.42 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=33.8
Q ss_pred EEeccCCCcccccCCCCCcccEEEechhhcC-------C-Cc----chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 132 VFPCDVTEDDILNQVPHNSVDIATLIFVLSA-------I-HP----NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 132 ~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~-------~-~~----~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++++|..+ +...++++++|+|+..-.... . +. +.....+.++.++|+|+|.+++..
T Consensus 7 i~~gDcle--~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 7 IHQMNCFD--FLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp EEECCHHH--HHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeccHHH--HHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 55566544 223466778888887432110 0 00 123467888999999999887643
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=83.70 E-value=0.95 Score=32.43 Aligned_cols=79 Identities=16% Similarity=0.128 Sum_probs=53.2
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CC---CC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV---PH 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~---~~ 148 (218)
+++++|=-|++.| ..+..+++.+ ++|+.+|.++..++.+.......+.++.++.+|+.+.+-.. .. -.
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLG--ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 5778888887766 2344555555 58999999998887776665555567888999998753211 11 12
Q ss_pred CcccEEEechh
Q psy1107 149 NSVDIATLIFV 159 (218)
Q Consensus 149 ~~~D~i~~~~~ 159 (218)
+..|+++.+..
T Consensus 85 ~~idilvnnAG 95 (259)
T d2ae2a_ 85 GKLNILVNNAG 95 (259)
T ss_dssp TCCCEEEECCC
T ss_pred CCceEEEECCc
Confidence 36899888543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=83.16 E-value=0.57 Score=33.75 Aligned_cols=79 Identities=13% Similarity=0.006 Sum_probs=47.8
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCH-HHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----CC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISP-RAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----PH 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~-~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~~ 148 (218)
+++++|=-|++.| ..+..+++.+ ++|+.++.+. ..++.+.+.....+.++.++.+|+.+.+-... + .-
T Consensus 6 ~gK~alITGas~GIG~aia~~la~~G--~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (261)
T d1geea_ 6 EGKVVVITGSSTGLGKSMAIRFATEK--AKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5677787777766 3344555545 5898888764 34444444333345678889999987632111 0 11
Q ss_pred CcccEEEechh
Q psy1107 149 NSVDIATLIFV 159 (218)
Q Consensus 149 ~~~D~i~~~~~ 159 (218)
+..|+++.+..
T Consensus 84 G~iDiLVnnAG 94 (261)
T d1geea_ 84 GKLDVMINNAG 94 (261)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEeeccce
Confidence 46898887543
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.48 E-value=1.1 Score=32.11 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=53.4
Q ss_pred CCcEEEEecCCCch---hHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CC-C--C
Q psy1107 79 GEGVLLEVGCGVGN---FIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV-P--H 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G~---~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~-~--~ 148 (218)
+++++|=-|+++|. .+..+++.+ ++|+.+|.++..++.+.......+.++.++.+|+.+.+-.. .. . .
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~G--a~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFG--AVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG 84 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 57788888887663 445555555 58999999998877776655444567899999998753211 11 1 2
Q ss_pred CcccEEEechh
Q psy1107 149 NSVDIATLIFV 159 (218)
Q Consensus 149 ~~~D~i~~~~~ 159 (218)
+..|+++.+..
T Consensus 85 g~idilvnnAG 95 (259)
T d1xq1a_ 85 GKLDILINNLG 95 (259)
T ss_dssp TCCSEEEEECC
T ss_pred CCccccccccc
Confidence 46899888543
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=80.39 E-value=0.72 Score=32.70 Aligned_cols=77 Identities=10% Similarity=0.087 Sum_probs=47.7
Q ss_pred EEEecCCCc---hhHHHHhhcCCc-----cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC------CCC
Q psy1107 83 LLEVGCGVG---NFIFPLLSWSKI-----CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ------VPH 148 (218)
Q Consensus 83 vLDiGcG~G---~~~~~~~~~~~~-----~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~------~~~ 148 (218)
||=-|+++| ..+..+++.+.. ..++.++-++..++.+.......+.++.++.+|+++.+-... -.-
T Consensus 4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (240)
T d2bd0a1 4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVERY 83 (240)
T ss_dssp EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 455676666 234444544421 248888999888777766544455678899999998642111 012
Q ss_pred CcccEEEechh
Q psy1107 149 NSVDIATLIFV 159 (218)
Q Consensus 149 ~~~D~i~~~~~ 159 (218)
+..|+++.+..
T Consensus 84 g~iDilvnnAg 94 (240)
T d2bd0a1 84 GHIDCLVNNAG 94 (240)
T ss_dssp SCCSEEEECCC
T ss_pred CCcceeecccc
Confidence 46898887554
|