Psyllid ID: psy11104

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPPLMLT
Secondary Structure (PSIPRED)
cEEEEEEEEEcccccEEEEEEccccccEEEEEcccccEEEEEEcccccEEEEEEHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEcccccEEEEEEEcccccEEEEccccccEEEEEccHHHHHHHHHEEcHHHHHccccccccc
Coil and Loop (DISEMBL)
MFIYLSKkiaipnntkvnCLAWHqnqgwiavggddgllkvLKLDTVSLTIMIILFQErnlqdklpplmlt
Flexible Loop (DISEMBL)
MFIYLSkkiaipnnTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILfqernlqdklpplmlt
Low Complexity Region (SEG)
MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAvggddgllkvlkldTVSLTIMIILFQERNLQDKLPPLMLT
Disordered region (IsUnstruct)
*FIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQER************
Disordered Region (DISOPRED)
MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS**************DKLPPLML*
Disordered Region (DISEMBL)
MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPPLMLT
Disordered Region (DISPRO)
MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPPL*L*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPPLMLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	70	2.2.26 [Sep-21-2011]
Q8BND3	1181	WD repeat-containing prot	yes	N/A	0.642	0.038	0.666	1e-13
A6N6J5	1170	WD repeat-containing prot	yes	N/A	0.642	0.038	0.666	1e-13
Q9P2L0	1181	WD repeat-containing prot	yes	N/A	0.642	0.038	0.688	2e-13

>sp|Q8BND3|WDR35_MOUSE WD repeat-containing protein 35 OS=Mus musculus GN=Wdr35 PE=2 SV=3

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/45 (66%), Positives = 41/45 (91%)

Query: 1  MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
          MF YLSKKIA+PNN K+ C++W+++QG+IA GG+DGLLKVL+L+T
Sbjct: 1  MFFYLSKKIAVPNNVKLKCISWNKDQGFIACGGEDGLLKVLRLET 45

May promote CASP3 activation and TNF-stimulated apoptosis (By similarity). Required for ciliogenesis.
Mus musculus (taxid: 10090)

>sp|A6N6J5|WDR35_RAT WD repeat-containing protein 35 OS=Rattus norvegicus GN=Wdr35 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/45 (66%), Positives = 41/45 (91%)

Query: 1  MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
          MF YLSKKIA+PNN K+ C++W+++QG+IA GG+DGLLKVL+L+T
Sbjct: 1  MFFYLSKKIAVPNNVKLKCISWNKDQGFIACGGEDGLLKVLRLET 45

May promote CASP3 activation and TNF-stimulated apoptosis. Required for ciliogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q9P2L0|WDR35_HUMAN WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1 SV=3

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/45 (68%), Positives = 40/45 (88%)

Query: 1  MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
          MF YLSKKI+IPNN K+ C++W++ QG+IA GG+DGLLKVLKL+T
Sbjct: 1  MFFYLSKKISIPNNVKLQCVSWNKEQGFIACGGEDGLLKVLKLET 45

May promote CASP3 activation and TNF-stimulated apoptosis. Required for ciliogenesis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
118780103	1197	AGAP011562-PA [Anopheles gambiae str. PE	0.7	0.040	0.734	4e-15
242005643	1140	WD-repeat protein, putative [Pediculus h	0.642	0.039	0.822	7e-15
157119878	1185	wd-repeat protein [Aedes aegypti] gi|108	0.7	0.041	0.714	2e-14
270014596	936	hypothetical protein TcasGA2_TC004637 [T	0.628	0.047	0.795	2e-13
291225001	1176	PREDICTED: WD repeat domain 35-like [Sac	0.642	0.038	0.755	2e-13
156398925	1173	predicted protein [Nematostella vectensi	0.642	0.038	0.755	2e-13
345491192	1120	PREDICTED: WD repeat-containing protein	0.7	0.043	0.673	3e-13
21358427	1205	Oseg4, isoform A [Drosophila melanogaste	0.671	0.039	0.702	4e-13
195490544	1205	GE20921 [Drosophila yakuba] gi|194179284	0.671	0.039	0.702	4e-13
195336700	1198	GM14175 [Drosophila sechellia] gi|194128	0.671	0.039	0.702	4e-13

>gi|118780103|ref|XP_309945.3| AGAP011562-PA [Anopheles gambiae str. PEST] gi|116131270|gb|EAA05707.3| AGAP011562-PA [Anopheles gambiae str. PEST]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/49 (73%), Positives = 46/49 (93%)

Query: 1  MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT 49
          MFIYLSKKIAIPNNT++NC+AW+++QG++AVGG+DGLLKVLKL+  S T
Sbjct: 1  MFIYLSKKIAIPNNTRLNCIAWNKDQGYVAVGGEDGLLKVLKLEQASST 49

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005643|ref|XP_002423673.1| WD-repeat protein, putative [Pediculus humanus corporis] gi|212506842|gb|EEB10935.1| WD-repeat protein, putative [Pediculus humanus corporis]

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/45 (82%), Positives = 43/45 (95%)

Query: 1  MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
          MFIYLSKKIAIPNNTK+NCLAW++ QG+IAVGG DGLLK+LKLD+
Sbjct: 1  MFIYLSKKIAIPNNTKLNCLAWNKEQGYIAVGGSDGLLKILKLDS 45

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157119878|ref|XP_001659551.1| wd-repeat protein [Aedes aegypti] gi|108883135|gb|EAT47360.1| AAEL001513-PA [Aedes aegypti]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/49 (71%), Positives = 45/49 (91%)

Query: 1  MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT 49
          MFIYLSKKIAIPNNT++NC+AW++ QG++AVGG+DGLLKVLKL+  + T
Sbjct: 1  MFIYLSKKIAIPNNTRLNCIAWNKEQGYVAVGGEDGLLKVLKLEQATAT 49

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014596|gb|EFA11044.1| hypothetical protein TcasGA2_TC004637 [Tribolium castaneum]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/44 (79%), Positives = 41/44 (93%)

Query: 1  MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD 44
          MFIYLSKKIAIPNNT++N +AW++  G+IAVGGDDGLLKVLKLD
Sbjct: 1  MFIYLSKKIAIPNNTRINAIAWNKEDGYIAVGGDDGLLKVLKLD 44

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291225001|ref|XP_002732486.1| PREDICTED: WD repeat domain 35-like [Saccoglossus kowalevskii]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/45 (75%), Positives = 42/45 (93%)

Query: 1  MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
          MFIYLSKKIAIPNNTK+ C++W++ QG+IA GG+DGLLKVLKL+T
Sbjct: 1  MFIYLSKKIAIPNNTKLKCVSWNREQGYIACGGEDGLLKVLKLET 45

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|156398925|ref|XP_001638438.1| predicted protein [Nematostella vectensis] gi|156225558|gb|EDO46375.1| predicted protein [Nematostella vectensis]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/45 (75%), Positives = 42/45 (93%)

Query: 1  MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
          MFIYLSKKIAIPNNT++ CLAW++ QG+IA GG++GLLKVLKL+T
Sbjct: 1  MFIYLSKKIAIPNNTRLKCLAWNREQGYIACGGEEGLLKVLKLET 45

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|345491192|ref|XP_001607766.2| PREDICTED: WD repeat-containing protein 35-like [Nasonia vitripennis]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/49 (67%), Positives = 43/49 (87%)

Query: 1  MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT 49
          MF+YLSKKIAIPNN  +NC+AW+Q QG+IAVGG+DGLLKV++ D+ + T
Sbjct: 1  MFVYLSKKIAIPNNVHLNCIAWNQKQGYIAVGGEDGLLKVIRADSGAST 49

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21358427|ref|NP_647653.1| Oseg4, isoform A [Drosophila melanogaster] gi|442629527|ref|NP_001261278.1| Oseg4, isoform B [Drosophila melanogaster] gi|7292144|gb|AAF47556.1| Oseg4, isoform A [Drosophila melanogaster] gi|16769404|gb|AAL28921.1| LD29485p [Drosophila melanogaster] gi|220947202|gb|ACL86144.1| Oseg4-PA [synthetic construct] gi|220956734|gb|ACL90910.1| Oseg4-PA [synthetic construct] gi|440215145|gb|AGB93973.1| Oseg4, isoform B [Drosophila melanogaster]

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 41/47 (87%)

Query: 1  MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS 47
          MF+YLSKKIAIPNN K+NC+AW++ +G+IAV G DGLLKVLKLD  +
Sbjct: 1  MFVYLSKKIAIPNNVKLNCIAWNKEEGYIAVAGTDGLLKVLKLDQAT 47

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195490544|ref|XP_002093183.1| GE20921 [Drosophila yakuba] gi|194179284|gb|EDW92895.1| GE20921 [Drosophila yakuba]

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 41/47 (87%)

Query: 1  MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS 47
          MF+YLSKKIAIPNN K+NC+AW++ +G+IAV G DGLLKVLKLD  +
Sbjct: 1  MFVYLSKKIAIPNNVKLNCIAWNKEEGYIAVAGTDGLLKVLKLDQAT 47

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195336700|ref|XP_002034971.1| GM14175 [Drosophila sechellia] gi|194128064|gb|EDW50107.1| GM14175 [Drosophila sechellia]

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 41/47 (87%)

Query: 1  MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS 47
          MF+YLSKKIAIPNN K+NC+AW++ +G+IAV G DGLLKVLKLD  +
Sbjct: 1  MFVYLSKKIAIPNNVKLNCIAWNKEEGYIAVAGTDGLLKVLKLDQAT 47

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
FB|FBgn0035264	1205	Oseg4 "Oseg4" [Drosophila mela	0.428	0.024	0.7	2.6e-07
ZFIN|ZDB-GENE-060810-148	1203	wdr35 "WD repeat domain 35" [D	0.428	0.024	0.7	4.4e-06
RGD|1564116	1170	Wdr35 "WD repeat domain 35" [R	0.428	0.025	0.633	7e-06
MGI|MGI:1921932	1181	Wdr35 "WD repeat domain 35" [M	0.428	0.025	0.633	7.1e-06
UNIPROTKB|F1SCU2	1186	WDR35 "Uncharacterized protein	0.428	0.025	0.633	7.1e-06
UNIPROTKB|Q9P2L0	1181	WDR35 "WD repeat-containing pr	0.428	0.025	0.633	1.1e-05
UNIPROTKB|E1BWD7	1180	WDR35 "Uncharacterized protein	0.428	0.025	0.566	7.5e-05

FB|FBgn0035264 Oseg4 "Oseg4" [Drosophila melanogaster (taxid:7227)]

 Score = 128 (50.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
 Identities = 21/30 (70%), Positives = 28/30 (93%)

Query:     1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIA 30
             MF+YLSKKIAIPNN K+NC+AW++ +G+IA
Sbjct:     1 MFVYLSKKIAIPNNVKLNCIAWNKEEGYIA 30

GO:0003674 "molecular_function" evidence=ND

GO:0042384 "cilium assembly" evidence=ISM;IEP

GO:0035058 "nonmotile primary cilium assembly" evidence=ISS

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-060810-148 wdr35 "WD repeat domain 35" [Danio rerio (taxid:7955)]

 Score = 120 (47.3 bits), Expect = 4.4e-06, P = 4.4e-06
 Identities = 21/30 (70%), Positives = 28/30 (93%)

Query:     1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIA 30
             MFIYLSKKIAIPNNT + C++W+++QG+IA
Sbjct:     1 MFIYLSKKIAIPNNTVLKCVSWNKDQGFIA 30

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

RGD|1564116 Wdr35 "WD repeat domain 35" [Rattus norvegicus (taxid:10116)]

 Score = 118 (46.6 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 19/30 (63%), Positives = 27/30 (90%)

Query:     1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIA 30
             MF YLSKKIA+PNN K+ C++W+++QG+IA
Sbjct:     1 MFFYLSKKIAVPNNVKLKCISWNKDQGFIA 30

GO:0005813 "centrosome" evidence=ISO;ISS

GO:0005932 "microtubule basal body" evidence=ISO;ISS

GO:0030991 "intraflagellar transport particle A" evidence=ISO;ISS

GO:0035085 "cilium axoneme" evidence=ISO;ISS

GO:0042384 "cilium assembly" evidence=ISO;ISS

MGI|MGI:1921932 Wdr35 "WD repeat domain 35" [Mus musculus (taxid:10090)]

 Score = 118 (46.6 bits), Expect = 7.1e-06, P = 7.1e-06
 Identities = 19/30 (63%), Positives = 27/30 (90%)

Query:     1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIA 30
             MF YLSKKIA+PNN K+ C++W+++QG+IA
Sbjct:     1 MFFYLSKKIAVPNNVKLKCISWNKDQGFIA 30

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0030030 "cell projection organization" evidence=IEA

GO:0030991 "intraflagellar transport particle A" evidence=ISO

GO:0035085 "cilium axoneme" evidence=IDA

GO:0042384 "cilium assembly" evidence=ISO;IMP

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|F1SCU2 WDR35 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 116 (45.9 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
 Identities = 19/30 (63%), Positives = 27/30 (90%)

Query:     1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIA 30
             MF YLSKKI+IPNN K+ C++W+++QG+IA
Sbjct:     1 MFFYLSKKISIPNNVKLKCISWNKDQGFIA 30

GO:0042384 "cilium assembly" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

UNIPROTKB|Q9P2L0 WDR35 "WD repeat-containing protein 35" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 19/30 (63%), Positives = 26/30 (86%)

Query:     1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIA 30
             MF YLSKKI+IPNN K+ C++W++ QG+IA
Sbjct:     1 MFFYLSKKISIPNNVKLQCVSWNKEQGFIA 30

GO:0030991 "intraflagellar transport particle A" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0005932 "microtubule basal body" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0035085 "cilium axoneme" evidence=ISS

UNIPROTKB|E1BWD7 WDR35 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 106 (42.4 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
 Identities = 17/30 (56%), Positives = 26/30 (86%)

Query:     1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIA 30
             MFIYL KKIAIP N ++ C++W++++G+IA
Sbjct:     1 MFIYLCKKIAIPGNVRLRCISWNKDEGFIA 30

GO:0005813 "centrosome" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9P2L0	WDR35_HUMAN	No assigned EC number	0.6888	0.6428	0.0381	yes	N/A
A6N6J5	WDR35_RAT	No assigned EC number	0.6666	0.6428	0.0384	yes	N/A
Q8BND3	WDR35_MOUSE	No assigned EC number	0.6666	0.6428	0.0381	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	70
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-04

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.8 bits (83), Expect = 5e-05
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
          V  +A+  +   +A G DDG ++V
Sbjct: 14 VTSVAFSPDGNLLASGSDDGTVRV 37

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.6 bits (80), Expect = 2e-04
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
          V  +A+  +  ++A G DDG +K+
Sbjct: 15 VTSVAFSPDGKYLASGSDDGTIKL 38

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 35.4 bits (82), Expect = 6e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL 48
           V C+A+  +   +A G  DG +KV  L+T  L
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL 43

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.36
KOG0272|consensus	459		99.05
KOG0266|consensus	456		98.96
KOG0271|consensus	480		98.8
KOG1523|consensus	361		98.71
KOG0271|consensus	480		98.67
KOG0263|consensus	707		98.67
KOG0295|consensus	406		98.66
KOG0285|consensus	460		98.64
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.63
KOG0278|consensus	334		98.62
KOG0263|consensus	707		98.61
KOG0291|consensus	893		98.6
KOG0269|consensus	839		98.58
KOG0284|consensus	464		98.57
KOG0283|consensus	712		98.55
PTZ00421	493	coronin; Provisional	98.53
KOG0264|consensus	422		98.52
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.52
KOG0302|consensus	440		98.51
KOG4283|consensus	397		98.5
KOG0650|consensus	733		98.5
KOG1007|consensus	370		98.49
PTZ00421	493	coronin; Provisional	98.47
KOG2041|consensus	1189		98.47
KOG1310|consensus	758		98.46
KOG0291|consensus	893		98.44
KOG2096|consensus	420		98.42
KOG2394|consensus	636		98.42
KOG0272|consensus	459		98.42
KOG0266|consensus	456		98.41
KOG0318|consensus	603		98.41
PTZ00420	568	coronin; Provisional	98.39
KOG0279|consensus	315		98.35
KOG0645|consensus	312		98.34
KOG0315|consensus	311		98.31
PLN00181	793	protein SPA1-RELATED; Provisional	98.29
KOG0302|consensus	440		98.24
PTZ00420	568	coronin; Provisional	98.24
KOG0292|consensus	1202		98.23
KOG0286|consensus	343		98.22
KOG0275|consensus	508		98.22
KOG0293|consensus	519		98.22
KOG0296|consensus	399		98.22
KOG0308|consensus	735		98.21
KOG0279|consensus	315		98.21
KOG0269|consensus	839		98.2
KOG0319|consensus	775		98.2
KOG1539|consensus	910		98.2
KOG0276|consensus	794		98.19
KOG0315|consensus	311		98.19
KOG0319|consensus	775		98.19
KOG0283|consensus	712		98.18
KOG0292|consensus	1202		98.15
KOG0273|consensus	524		98.15
KOG0273|consensus	524		98.14
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.14
KOG0275|consensus	508		98.13
KOG1273|consensus	405		98.13
KOG0772|consensus	641		98.13
KOG0643|consensus	327		98.09
KOG0310|consensus	487		98.09
KOG0641|consensus	350		98.08
PLN00181	793	protein SPA1-RELATED; Provisional	98.08
KOG0286|consensus	343		98.06
KOG0282|consensus	503		98.06
KOG2110|consensus	391		98.05
KOG0973|consensus	942		98.04
KOG0643|consensus	327		98.02
KOG0284|consensus	464		98.01
KOG1407|consensus	313		98.0
KOG0265|consensus	338		97.99
KOG0647|consensus	347		97.98
KOG0277|consensus	311		97.98
KOG0289|consensus	506		97.98
KOG1034|consensus	385		97.98
KOG1009|consensus	434		97.96
KOG0313|consensus	423		97.96
KOG0306|consensus	888		97.96
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.95
KOG0296|consensus	399		97.94
KOG0646|consensus	476		97.92
KOG1272|consensus	545		97.92
KOG0772|consensus	641		97.91
KOG2111|consensus	346		97.89
KOG0285|consensus	460		97.87
KOG1274|consensus	933		97.87
KOG0265|consensus	338		97.86
KOG0649|consensus	325		97.85
KOG0973|consensus	942		97.85
KOG0288|consensus	459		97.85
KOG0277|consensus	311		97.85
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.83
KOG2048|consensus	691		97.8
KOG1446|consensus	311		97.8
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.77
KOG1034|consensus	385		97.77
KOG2445|consensus	361		97.76
KOG0274|consensus	537		97.76
KOG0318|consensus	603		97.75
KOG0305|consensus	484		97.75
KOG1445|consensus	1012		97.75
KOG1036|consensus	323		97.75
KOG0645|consensus	312		97.73
KOG1408|consensus	1080		97.7
KOG0316|consensus	307		97.7
KOG0294|consensus	362		97.68
KOG0305|consensus	484		97.68
KOG0303|consensus	472		97.67
KOG0322|consensus	323		97.66
KOG0267|consensus	825		97.66
KOG1274|consensus	933		97.65
KOG2096|consensus	420		97.64
KOG1332|consensus	299		97.64
KOG4283|consensus	397		97.61
KOG1188|consensus	376		97.59
KOG1538|consensus	1081		97.58
KOG0281|consensus	499		97.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.57
KOG0306|consensus	888		97.56
KOG0307|consensus	1049		97.56
KOG0270|consensus	463		97.55
KOG0276|consensus	794		97.54
KOG0289|consensus	506		97.53
KOG0640|consensus	430		97.53
KOG0267|consensus	825		97.49
KOG0274|consensus	537		97.49
KOG1009|consensus	434		97.48
KOG1446|consensus	311		97.46
KOG0281|consensus	499		97.44
KOG0264|consensus	422		97.44
KOG0316|consensus	307		97.43
KOG1334|consensus	559		97.41
KOG0268|consensus	433		97.41
KOG1407|consensus	313		97.4
KOG0282|consensus	503		97.36
KOG0293|consensus	519		97.35
KOG0295|consensus	406		97.35
KOG1524|consensus	737		97.33
KOG0290|consensus	364		97.32
KOG0640|consensus	430		97.3
KOG1332|consensus	299		97.3
KOG0299|consensus	479		97.29
KOG4328|consensus	498		97.25
KOG0294|consensus	362		97.24
KOG0268|consensus	433		97.24
KOG4227|consensus	609		97.23
KOG0647|consensus	347		97.23
KOG2919|consensus	406		97.21
KOG1063|consensus	764		97.18
KOG0642|consensus	577		97.16
KOG0974|consensus	967		97.16
KOG0301|consensus	745		97.15
KOG0771|consensus	398		97.14
KOG0310|consensus	487		97.12
KOG0308|consensus	735		97.11
KOG0278|consensus	334		97.11
KOG0303|consensus	472		97.09
KOG2445|consensus	361		97.08
KOG1524|consensus	737		97.06
KOG0313|consensus	423		97.06
KOG0300|consensus	481		97.05
COG2319	466	FOG: WD40 repeat [General function prediction only	97.03
KOG4640|consensus	665		97.02
KOG2394|consensus	636		97.01
COG2319	466	FOG: WD40 repeat [General function prediction only	96.99
KOG1445|consensus	1012		96.98
KOG3914|consensus	390		96.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.93
KOG0322|consensus	323		96.93
KOG2055|consensus	514		96.91
KOG0771|consensus	398		96.9
KOG2106|consensus	626		96.87
KOG1523|consensus	361		96.86
KOG0270|consensus	463		96.81
KOG0641|consensus	350		96.81
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	96.78
KOG1273|consensus	405		96.78
KOG1188|consensus	376		96.77
KOG1063|consensus	764		96.77
KOG1240|consensus	1431		96.76
KOG0290|consensus	364		96.72
KOG1036|consensus	323		96.71
KOG0299|consensus	479		96.7
KOG2111|consensus	346		96.67
KOG0646|consensus	476		96.66
KOG4328|consensus	498		96.61
KOG0639|consensus	705		96.54
KOG1963|consensus	792		96.53
KOG0288|consensus	459		96.45
KOG0642|consensus	577		96.43
KOG0321|consensus	720		96.39
KOG0321|consensus	720		96.36
KOG2055|consensus	514		96.29
KOG1408|consensus	1080		96.29
KOG0300|consensus	481		96.27
KOG0644|consensus	1113		96.26
KOG0301|consensus	745		96.22
KOG0639|consensus	705		96.1
PRK01742	429	tolB translocation protein TolB; Provisional	96.08
KOG1064|consensus	2439		96.08
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.99
KOG2106|consensus	626		95.96
KOG3881|consensus	412		95.85
KOG1963|consensus	792		95.83
PRK05137	435	tolB translocation protein TolB; Provisional	95.81
KOG1409|consensus	404		95.77
KOG0307|consensus	1049		95.7
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	95.66
KOG1587|consensus	555		95.51
KOG2079|consensus	1206		95.44
KOG0280|consensus	339		95.36
PRK11028	330	6-phosphogluconolactonase; Provisional	95.19
KOG4532|consensus	344		95.17
PRK02889	427	tolB translocation protein TolB; Provisional	95.09
KOG2315|consensus	566		95.08
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	95.06
KOG2048|consensus	691		94.97
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	94.96
KOG4714|consensus	319		94.93
KOG1310|consensus	758		94.88
KOG1007|consensus	370		94.85
KOG2321|consensus	703		94.83
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	94.73
KOG2110|consensus	391		94.66
KOG2139|consensus	445		94.62
KOG4378|consensus	673		94.62
KOG4378|consensus	673		94.49
KOG4227|consensus	609		94.28
PRK01742	429	tolB translocation protein TolB; Provisional	94.27
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	94.21
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.89
KOG1587|consensus	555		93.82
PRK04922	433	tolB translocation protein TolB; Provisional	93.54
KOG1334|consensus	559		93.52
PRK11028	330	6-phosphogluconolactonase; Provisional	93.49
KOG0280|consensus	339		93.47
KOG2919|consensus	406		93.38
PRK00178	430	tolB translocation protein TolB; Provisional	93.02
KOG0974|consensus	967		92.58
KOG1539|consensus	910		92.56
KOG4497|consensus	447		92.45
KOG0644|consensus	1113		92.41
PRK05137	435	tolB translocation protein TolB; Provisional	92.09
KOG4547|consensus	541		92.06
KOG1517|consensus	1387		91.74
KOG2695|consensus	425		91.59
KOG3914|consensus	390		91.42
KOG2314|consensus	698		91.38
PRK03629	429	tolB translocation protein TolB; Provisional	91.32
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	91.21
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	91.15
KOG2066|consensus	846		91.14
KOG0650|consensus	733		91.09
KOG3881|consensus	412		91.05
KOG1645|consensus	463		91.04
PRK04922	433	tolB translocation protein TolB; Provisional	90.91
KOG4714|consensus	319		90.71
KOG2321|consensus	703		90.64
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	90.54
PRK01029	428	tolB translocation protein TolB; Provisional	90.43
PRK04792	448	tolB translocation protein TolB; Provisional	90.37
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	90.12
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.09
PRK02889	427	tolB translocation protein TolB; Provisional	89.96
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	89.44
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.35
PRK03629	429	tolB translocation protein TolB; Provisional	89.19
KOG3621|consensus	726		89.01
PRK00178	430	tolB translocation protein TolB; Provisional	88.97
KOG1354|consensus	433		88.92
KOG1240|consensus	1431		88.91
KOG4497|consensus	447		88.86
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	88.81
KOG3617|consensus	1416		88.74
KOG1538|consensus	1081		87.52
KOG2066|consensus	846		87.27
KOG2695|consensus	425		86.58
KOG1409|consensus	404		86.18
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	86.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	86.05
KOG0649|consensus	325		85.97
KOG1354|consensus	433		85.92
KOG4190|consensus	1034		85.1
KOG1517|consensus	1387		85.08
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	84.87
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	84.56
PRK04792	448	tolB translocation protein TolB; Provisional	84.41
KOG0309|consensus	1081		82.31
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	81.74
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	81.45
KOG1832|consensus	1516		81.42
PRK01029	428	tolB translocation protein TolB; Provisional	81.42
KOG2315|consensus	566		80.75
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	80.63
KOG0309|consensus	1081		80.27

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.36  E-value=3.9e-12  Score=64.61  Aligned_cols=39  Identities=21%  Similarity=0.457  Sum_probs=35.7

Q ss_pred             EeeeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11104          4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLK   42 (70)
Q Consensus         4 ~~~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWd   42 (70)
                      |...+...+|.+.|++|+|+|++.+|||||.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            455667789999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0272|consensus

Probab=99.05  E-value=2.2e-10  Score=86.08  Aligned_cols=55  Identities=24%  Similarity=0.176  Sum_probs=50.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      +|..+|.+|+|+|||..|||||.|+++||||++..++...+-++.....+++|-|
T Consensus       343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p  397 (459)
T KOG0272|consen  343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP  397 (459)
T ss_pred             ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc
Confidence            7899999999999999999999999999999999999888888877777777776

>KOG0266|consensus

Probab=98.96  E-value=2.2e-09  Score=79.56  Aligned_cols=56  Identities=16%  Similarity=0.213  Sum_probs=47.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      ++|...|+|++|+|+|++++||+.|++|||||+++++..-.+..+........|+|
T Consensus       243 ~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~  298 (456)
T KOG0266|consen  243 KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP  298 (456)
T ss_pred             cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence            38999999999999999999999999999999999776666666665555555554

>KOG0271|consensus

Probab=98.80  E-value=3.8e-09  Score=79.35  Aligned_cols=58  Identities=21%  Similarity=0.219  Sum_probs=46.0

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccc-ccccccCCCC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE-RNLQDKLPPL   67 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~-~~~~~~~~~~   67 (70)
                      -+.|...|.||+|+|||+.||||+.||+|++||.+++.+..+...+|. ..+.-.+-|+
T Consensus       153 ~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~  211 (480)
T KOG0271|consen  153 CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPL  211 (480)
T ss_pred             ecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeeccc
Confidence            357999999999999999999999999999999999887776665543 2444444443

>KOG1523|consensus

Probab=98.71  E-value=8.9e-09  Score=75.70  Aligned_cols=41  Identities=34%  Similarity=0.571  Sum_probs=39.7

Q ss_pred             eEEeeeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11104          2 FIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLK   42 (70)
Q Consensus         2 ~~~~~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWd   42 (70)
                      .||.+|||++|+.+.|.|++|+|++-+||.||.|+.+|++.
T Consensus       134 dWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS  174 (361)
T KOG1523|consen  134 DWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS  174 (361)
T ss_pred             ceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence            59999999999999999999999999999999999999996

>KOG0271|consensus

Probab=98.67  E-value=2e-08  Score=75.49  Aligned_cols=54  Identities=17%  Similarity=0.138  Sum_probs=46.8

Q ss_pred             CeEEeeeeeec------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104          1 MFIYLSKKIAI------PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus         1 ~~~~~~~~I~~------~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ||+|.-+.-++      +|..-|+.|.||||+.+|||+|-|++||+||-++++...+++.
T Consensus       348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG  407 (480)
T KOG0271|consen  348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG  407 (480)
T ss_pred             EEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence            68887766663      6899999999999999999999999999999999987766554

>KOG0263|consensus

Probab=98.67  E-value=2.2e-08  Score=78.93  Aligned_cols=46  Identities=28%  Similarity=0.431  Sum_probs=40.5

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      .|..+|.++|.+++|||+|.+||||++||.|+|||+.+++....+.
T Consensus       571 RiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~  616 (707)
T KOG0263|consen  571 RIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK  616 (707)
T ss_pred             EEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh
Confidence            4667999999999999999999999999999999999987554433

>KOG0295|consensus

Probab=98.66  E-value=3.8e-08  Score=73.29  Aligned_cols=54  Identities=15%  Similarity=0.135  Sum_probs=48.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLP   65 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~   65 (70)
                      +|...|..++|+|-|+||+|+.+|+++|+||+++.++..+..++++-.++-+|+
T Consensus       332 ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh  385 (406)
T KOG0295|consen  332 GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH  385 (406)
T ss_pred             cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC
Confidence            688999999999999999999999999999999999999988876655555554

>KOG0285|consensus

Probab=98.64  E-value=4.8e-08  Score=73.13  Aligned_cols=54  Identities=20%  Similarity=0.269  Sum_probs=48.2

Q ss_pred             EeeeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccc
Q psy11104          4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE   57 (70)
Q Consensus         4 ~~~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~   57 (70)
                      |+...+-..|.+.|.||++.|-.+++|||+.|++|+|||++++..-+++..+-+
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~  194 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIE  194 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhh
Confidence            555666678999999999999999999999999999999999999988887655

>smart00320 WD40 WD40 repeats

Probab=98.63  E-value=8.7e-08  Score=44.28  Aligned_cols=31  Identities=23%  Similarity=0.446  Sum_probs=29.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLK   42 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWd   42 (70)
                      .|...|.+++|+|++.++++|+.||.+++|+
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            6788999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0278|consensus

Probab=98.62  E-value=5.4e-08  Score=70.40  Aligned_cols=38  Identities=16%  Similarity=0.323  Sum_probs=33.9

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .+.|-++|.||.|+|+|+..|+||+||+||||....++
T Consensus       263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            36799999999999999999999999999999865443

>KOG0263|consensus

Probab=98.61  E-value=4.1e-08  Score=77.40  Aligned_cols=58  Identities=17%  Similarity=0.328  Sum_probs=44.7

Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus         9 I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      |.-.|.+.|.|++||||+.|+|+||.|.+||+||+.++..+=.+..+.-.....+|-|
T Consensus       530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp  587 (707)
T KOG0263|consen  530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP  587 (707)
T ss_pred             hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC
Confidence            4457899999999999999999999999999999999987444433322344444544

>KOG0291|consensus

Probab=98.60  E-value=7.7e-08  Score=76.67  Aligned_cols=44  Identities=20%  Similarity=0.317  Sum_probs=40.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      +|...++|++++|||++||+|++||+|||||..++-+-+++..+
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH  391 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH  391 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC
Confidence            68889999999999999999999999999999998877776654

>KOG0269|consensus

Probab=98.58  E-value=6.7e-08  Score=76.87  Aligned_cols=37  Identities=35%  Similarity=0.822  Sum_probs=33.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .+|+++|.|+.||||+.+|||||.|++|||||..+.+
T Consensus       217 ~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~  253 (839)
T KOG0269|consen  217 TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR  253 (839)
T ss_pred             hcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence            4799999999999999999999999999999977544

>KOG0284|consensus

Probab=98.57  E-value=2.8e-08  Score=74.89  Aligned_cols=56  Identities=25%  Similarity=0.355  Sum_probs=50.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      .+|+-.|.|++|||.-.+|||||.|..||+||.+++.+.++++.+....+..+|-|
T Consensus       219 ~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~  274 (464)
T KOG0284|consen  219 RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP  274 (464)
T ss_pred             ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC
Confidence            47899999999999999999999999999999999999999999888777777654

>KOG0283|consensus

Probab=98.55  E-value=1.1e-07  Score=75.24  Aligned_cols=42  Identities=17%  Similarity=0.416  Sum_probs=37.9

Q ss_pred             EeeeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104          4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus         4 ~~~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      +....|..+|.+.|+|+.||+||+||||||+||.||||.+..
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie  298 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIE  298 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEec
Confidence            445567779999999999999999999999999999999876

>PTZ00421 coronin; Provisional

Probab=98.53  E-value=2.8e-07  Score=69.81  Aligned_cols=36  Identities=8%  Similarity=0.141  Sum_probs=33.1

Q ss_pred             cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q psy11104         11 IPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        11 ~~~~~~V~~va~sp-dg~~LasGg~Dg~IklWdi~~~   46 (70)
                      .+|.+.|++++|+| ++++|||||+||+|++||+.++
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~  108 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEE  108 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCC
Confidence            46899999999999 7899999999999999999765

>KOG0264|consensus

Probab=98.52  E-value=1.9e-07  Score=70.31  Aligned_cols=59  Identities=19%  Similarity=0.281  Sum_probs=43.6

Q ss_pred             eeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEEeccc-ccccccCCC
Q psy11104          8 KIAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE-RNLQDKLPP   66 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~-~~~~~~~~~   66 (70)
                      +...+|.+.|+|++|||- +..|||||.|++|+|||+++-+..+-..-.++ ..++..+-|
T Consensus       266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP  326 (422)
T KOG0264|consen  266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP  326 (422)
T ss_pred             ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC
Confidence            455689999999999997 67899999999999999988776443333333 344444433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.52  E-value=4.3e-07  Score=57.56  Aligned_cols=41  Identities=29%  Similarity=0.490  Sum_probs=36.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      .|.++|.+++|+|++++|++|+.||.|++|++.++......
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~   47 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL   47 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE
Confidence            78999999999999999999999999999999877644433

>KOG0302|consensus

Probab=98.51  E-value=1.2e-07  Score=71.05  Aligned_cols=51  Identities=14%  Similarity=0.244  Sum_probs=40.4

Q ss_pred             Eeeeeeec-CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-CeEEEEEe
Q psy11104          4 YLSKKIAI-PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTV-SLTIMIIL   54 (70)
Q Consensus         4 ~~~~~I~~-~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~-~~~~~~~~   54 (70)
                      |+...+.+ .|...|..++|||. ...|||||.||+|||||++++ +.++....
T Consensus       246 W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k  299 (440)
T KOG0302|consen  246 WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK  299 (440)
T ss_pred             eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee
Confidence            44445555 68999999999998 778999999999999999988 34444443

>KOG4283|consensus

Probab=98.50  E-value=3.3e-07  Score=67.60  Aligned_cols=48  Identities=17%  Similarity=0.396  Sum_probs=39.3

Q ss_pred             eeeecCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104          7 KKIAIPNNTKVNCLAWHQNQGW-IAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus         7 ~~I~~~~~~~V~~va~spdg~~-LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .|+--+|++.|.+|+|+|..++ |||||.||.||+||++...-.+....
T Consensus       181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD  229 (397)
T KOG4283|consen  181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLD  229 (397)
T ss_pred             eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEee
Confidence            3566689999999999999665 89999999999999987754444444

>KOG0650|consensus

Probab=98.50  E-value=2.9e-07  Score=72.17  Aligned_cols=59  Identities=17%  Similarity=0.251  Sum_probs=48.1

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCCC
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPPL   67 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~~   67 (70)
                      .+..+|.+.|.||+-+|.|++|||||+||++|||.+.++.+.-++..+ +..-|..+.|+
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~  452 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPL  452 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCC
Confidence            456789999999999999999999999999999999999876665544 34555555554

>KOG1007|consensus

Probab=98.49  E-value=7.9e-08  Score=70.51  Aligned_cols=45  Identities=20%  Similarity=0.383  Sum_probs=39.2

Q ss_pred             eeeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104          7 KKIAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus         7 ~~I~~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      ..|+.+|.+.|+.++|||+ .-+|||||+||.|||||.+..+.++.
T Consensus       207 ~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~  252 (370)
T KOG1007|consen  207 NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ  252 (370)
T ss_pred             cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence            4577789999999999999 66799999999999999988776554

>PTZ00421 coronin; Provisional

Probab=98.47  E-value=5e-07  Score=68.49  Aligned_cols=43  Identities=9%  Similarity=0.258  Sum_probs=38.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .|...|++++|+|+|.+||+|+.||+|++||+++++....+..
T Consensus       166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~  208 (493)
T PTZ00421        166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA  208 (493)
T ss_pred             CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec
Confidence            5888999999999999999999999999999998886655443

>KOG2041|consensus

Probab=98.47  E-value=2.8e-07  Score=73.98  Aligned_cols=47  Identities=64%  Similarity=1.143  Sum_probs=44.6

Q ss_pred             CeEEeeeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104          1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus         1 ~~~~~~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ||+|++|+|..|++....|++||.+..+||+||.||.+|+-.+.++.
T Consensus         1 Mfvylskki~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t   47 (1189)
T KOG2041|consen    1 MFVYLSKKIGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDT   47 (1189)
T ss_pred             CceEeecccCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccC
Confidence            99999999999999999999999999999999999999999887654

>KOG1310|consensus

Probab=98.46  E-value=1.8e-07  Score=73.05  Aligned_cols=57  Identities=26%  Similarity=0.297  Sum_probs=49.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccc-cccccCCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQER-NLQDKLPPL   67 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~-~~~~~~~~~   67 (70)
                      .+|.+.|+|++|+.||.+|||||+|-.+.|||.-..+..-.+.-+|.+ ..++||-|-
T Consensus        47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~  104 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPY  104 (758)
T ss_pred             ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeecc
Confidence            379999999999999999999999999999999988888888888777 457777663

>KOG0291|consensus

Probab=98.44  E-value=5.1e-07  Score=72.08  Aligned_cols=45  Identities=16%  Similarity=0.287  Sum_probs=38.7

Q ss_pred             eEEeeee-----eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104          2 FIYLSKK-----IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus         2 ~~~~~~~-----I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      |||..++     |-.+|.++|.+++|+|+|..|||||.|++||+||+-+.
T Consensus       461 fvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  461 FVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             EEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence            6776654     44589999999999999999999999999999997544

>KOG2096|consensus

Probab=98.42  E-value=3.1e-07  Score=68.15  Aligned_cols=36  Identities=11%  Similarity=0.140  Sum_probs=33.6

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      -++|++.|.+++|++||+.|||++.|++||||+++.
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D  117 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRD  117 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecch
Confidence            357999999999999999999999999999999876

>KOG2394|consensus

Probab=98.42  E-value=3.8e-07  Score=70.77  Aligned_cols=53  Identities=17%  Similarity=0.313  Sum_probs=44.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      -+...||+|||||++|++||+|-.|-||.....+.+++-+.++-=...++|-|
T Consensus       332 FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  332 FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            35789999999999999999999999999999999998766655455555655

>KOG0272|consensus

Probab=98.42  E-value=2.9e-07  Score=69.49  Aligned_cols=55  Identities=22%  Similarity=0.256  Sum_probs=45.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      +|...|.+++|+|||.+++|||.|.+-||||++++++...+..+-...+...|-|
T Consensus       301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP  355 (459)
T KOG0272|consen  301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP  355 (459)
T ss_pred             ccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECC
Confidence            7899999999999999999999999999999999988776655433455555554

>KOG0266|consensus

Probab=98.41  E-value=9.2e-07  Score=65.72  Aligned_cols=57  Identities=14%  Similarity=0.193  Sum_probs=43.4

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccc-cccccCCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQER-NLQDKLPPL   67 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~-~~~~~~~~~   67 (70)
                      ..|...|++++|+|+|+++++|+.|++|||||+..+........+|+. ..+..|-|.
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~  257 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD  257 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC
Confidence            368899999999999999999999999999999665455555555443 444445443

>KOG0318|consensus

Probab=98.41  E-value=6.6e-07  Score=69.21  Aligned_cols=41  Identities=17%  Similarity=0.243  Sum_probs=37.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      .+|.+.|.+|+|+||++.++|+|.|.++||||+.+.+..-.
T Consensus       232 ~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t  272 (603)
T KOG0318|consen  232 DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST  272 (603)
T ss_pred             CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE
Confidence            48999999999999999999999999999999988864443

>PTZ00420 coronin; Provisional

Probab=98.39  E-value=1e-06  Score=68.22  Aligned_cols=36  Identities=14%  Similarity=0.211  Sum_probs=33.0

Q ss_pred             cCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q psy11104         11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        11 ~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~   46 (70)
                      .+|.+.|.+++|+|+ +.+|||||.||+|+|||+.++
T Consensus        71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~  107 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHN  107 (568)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Confidence            368999999999997 899999999999999999764

>KOG0279|consensus

Probab=98.35  E-value=9e-07  Score=64.34  Aligned_cols=50  Identities=20%  Similarity=0.186  Sum_probs=44.1

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccc
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE   57 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~   57 (70)
                      +...+|++.++.+++||||.++|+||.||.+-+||++.++....+.+++.
T Consensus       186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~  235 (315)
T KOG0279|consen  186 TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDI  235 (315)
T ss_pred             hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCe
Confidence            44457899999999999999999999999999999999998777777654

>KOG0645|consensus

Probab=98.34  E-value=2.4e-06  Score=62.07  Aligned_cols=54  Identities=15%  Similarity=0.343  Sum_probs=45.0

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--eEEEEEeccccccccc
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS--LTIMIILFQERNLQDK   63 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~--~~~~~~~~~~~~~~~~   63 (70)
                      -.+|...|-||+||++|++||+||.|++|-||.+..+.  ..+.+...|.+.|+..
T Consensus       101 lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V  156 (312)
T KOG0645|consen  101 LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV  156 (312)
T ss_pred             eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE
Confidence            34788999999999999999999999999999987443  6677777777777654

>KOG0315|consensus

Probab=98.31  E-value=8.6e-07  Score=64.03  Aligned_cols=34  Identities=21%  Similarity=0.565  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      .|+..|.+|.|..+|+++.|||+||++||||+++
T Consensus        81 ~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~  114 (311)
T KOG0315|consen   81 GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS  114 (311)
T ss_pred             ccCCceEEEEEeecCeEEEecCCCceEEEEeccC
Confidence            5778999999999999999999999999999987

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.29  E-value=2.4e-06  Score=66.67  Aligned_cols=42  Identities=19%  Similarity=0.297  Sum_probs=36.0

Q ss_pred             cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         11 IPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        11 ~~~~~~V~~va~sp-dg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      ..|.+.|++++|+| ++.+|+|||.||+|++||++++.....+
T Consensus       572 ~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        572 KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            37899999999997 6899999999999999999887654433

>KOG0302|consensus

Probab=98.24  E-value=2.3e-06  Score=64.34  Aligned_cols=56  Identities=23%  Similarity=0.423  Sum_probs=41.3

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---eEEEEEecccccccccCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS---LTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~---~~~~~~~~~~~~~~~~~~~   66 (70)
                      ++|++.||.|+||.+-.+||||++||+++|||++.-+   -+..+..+....++..+-|
T Consensus       299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p  357 (440)
T KOG0302|consen  299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP  357 (440)
T ss_pred             eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecc
Confidence            5799999999999997799999999999999986544   3334444444444444433

>PTZ00420 coronin; Provisional

Probab=98.24  E-value=4e-06  Score=64.95  Aligned_cols=42  Identities=12%  Similarity=0.355  Sum_probs=36.1

Q ss_pred             cCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGW-IAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~-LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      .+|...|.+|+|||++.. |||||.||+|+|||++++.....+
T Consensus       122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i  164 (568)
T PTZ00420        122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI  164 (568)
T ss_pred             ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            468899999999999765 689999999999999988765544

>KOG0292|consensus

Probab=98.23  E-value=2.6e-06  Score=69.36  Aligned_cols=55  Identities=13%  Similarity=0.254  Sum_probs=52.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      +|-+.|+.+.||+.-.+|.|+|+|.+||||+.++.++.+.++.+.|-..|++|-|
T Consensus        91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp  145 (1202)
T KOG0292|consen   91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP  145 (1202)
T ss_pred             cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC
Confidence            7899999999999999999999999999999999999999999999999999988

>KOG0286|consensus

Probab=98.22  E-value=3.7e-06  Score=61.64  Aligned_cols=45  Identities=13%  Similarity=0.044  Sum_probs=39.4

Q ss_pred             cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         11 IPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        11 ~~~~~~V~~va~sp-dg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      .+|.+.|.+++++| +++.++|||.|++.+|||++++...-++..+
T Consensus       183 ~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh  228 (343)
T KOG0286|consen  183 HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH  228 (343)
T ss_pred             cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc
Confidence            48999999999999 7999999999999999999999665554443

>KOG0275|consensus

Probab=98.22  E-value=8.7e-07  Score=66.31  Aligned_cols=44  Identities=20%  Similarity=0.470  Sum_probs=40.1

Q ss_pred             eeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeE
Q psy11104          6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus         6 ~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      .++|+++..+.+.|..|||||++|+|||-||.|.+||+-+++..
T Consensus       205 ~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr  248 (508)
T KOG0275|consen  205 ARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR  248 (508)
T ss_pred             hhheecccccchhheeeCCCCceEeeccccceeeeehhccchhh
Confidence            46899999999999999999999999999999999999887643

>KOG0293|consensus

Probab=98.22  E-value=5.2e-07  Score=68.52  Aligned_cols=34  Identities=24%  Similarity=0.571  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q psy11104         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        12 ~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~   45 (70)
                      +|...|+||+|||. ..++||||+||+||||....
T Consensus       480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            79999999999997 67899999999999998753

>KOG0296|consensus

Probab=98.22  E-value=4.2e-06  Score=62.48  Aligned_cols=52  Identities=17%  Similarity=0.267  Sum_probs=45.0

Q ss_pred             eEEeeeeeec-----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104          2 FIYLSKKIAI-----PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus         2 ~~~~~~~I~~-----~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      |+|...+=..     .|+..|.|++||.+|.+||||+.+|.|+||+.+++...+.+.
T Consensus        89 flW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~  145 (399)
T KOG0296|consen   89 FLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD  145 (399)
T ss_pred             EEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee
Confidence            6676655433     699999999999999999999999999999999998887764

>KOG0308|consensus

Probab=98.21  E-value=3.3e-06  Score=66.61  Aligned_cols=53  Identities=15%  Similarity=0.240  Sum_probs=47.1

Q ss_pred             eeeeec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccc
Q psy11104          6 SKKIAI-PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQER   58 (70)
Q Consensus         6 ~~~I~~-~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~   58 (70)
                      ++.|+. +|...|.++-.++||..+.|||.||+||+||+.-+++..+++.+.|.
T Consensus       204 ~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~  257 (735)
T KOG0308|consen  204 KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG  257 (735)
T ss_pred             cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence            444554 89999999999999999999999999999999999999998887664

>KOG0279|consensus

Probab=98.21  E-value=3e-06  Score=61.61  Aligned_cols=56  Identities=14%  Similarity=0.097  Sum_probs=46.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      ++|...|..++.++||++..|||.||++|+||+.+++...++..+..-.++.+|-|
T Consensus        60 ~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~  115 (315)
T KOG0279|consen   60 TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST  115 (315)
T ss_pred             eccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC
Confidence            36899999999999999999999999999999999977777776655555555543

>KOG0269|consensus

Probab=98.20  E-value=1.5e-06  Score=69.33  Aligned_cols=58  Identities=19%  Similarity=0.227  Sum_probs=48.1

Q ss_pred             eecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104          9 IAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus         9 I~~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      ..+.|...+++++||+. ..+|+|||.||+||+||++..+...+....-|..-+++|-|
T Consensus       128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp  186 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP  186 (839)
T ss_pred             HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence            45579999999999998 78899999999999999999888777777666555555544

>KOG0319|consensus

Probab=98.20  E-value=1.3e-06  Score=69.37  Aligned_cols=58  Identities=19%  Similarity=0.260  Sum_probs=45.0

Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccc-cccccCCCC
Q psy11104          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQER-NLQDKLPPL   67 (70)
Q Consensus         9 I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~-~~~~~~~~~   67 (70)
                      ....|...||||+.+|+..+|||||.|++.|||++... .......+|.| .-|++|-|-
T Consensus       458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~  516 (775)
T KOG0319|consen  458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKN  516 (775)
T ss_pred             HHHhhcccccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccc
Confidence            44579999999999999999999999999999999944 44444455555 446666653

>KOG1539|consensus

Probab=98.20  E-value=2.4e-06  Score=68.68  Aligned_cols=37  Identities=14%  Similarity=0.367  Sum_probs=35.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      +|+..|++++|||||++|++++.|++||+||+-++.+
T Consensus       574 gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l  610 (910)
T KOG1539|consen  574 GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL  610 (910)
T ss_pred             ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce
Confidence            6999999999999999999999999999999988864

>KOG0276|consensus

Probab=98.19  E-value=3.9e-06  Score=66.30  Aligned_cols=60  Identities=13%  Similarity=0.043  Sum_probs=50.7

Q ss_pred             EEeeeeeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEEeccccc-cccc
Q psy11104          3 IYLSKKIAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERN-LQDK   63 (70)
Q Consensus         3 ~~~~~~I~~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~-~~~~   63 (70)
                      -|+..-+..+|...|.+|+|||. .+.+||||-|++||+|.+.+.....++. +||.+ .|..
T Consensus       129 ~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vd  190 (794)
T KOG0276|consen  129 EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVD  190 (794)
T ss_pred             ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee-ccccCcceEE
Confidence            47777888899999999999996 8899999999999999999998888887 44544 4443

>KOG0315|consensus

Probab=98.19  E-value=3.5e-06  Score=60.93  Aligned_cols=55  Identities=7%  Similarity=0.009  Sum_probs=44.7

Q ss_pred             eeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccccccc
Q psy11104          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQ   61 (70)
Q Consensus         7 ~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~   61 (70)
                      ...-..|...++..+||.||+||+|||.|+++|+|+++.+++.-....++...+|
T Consensus       251 e~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc  305 (311)
T KOG0315|consen  251 ELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC  305 (311)
T ss_pred             EEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence            3334578899999999999999999999999999999999877665555444444

>KOG0319|consensus

Probab=98.19  E-value=2.6e-06  Score=67.69  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=39.0

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      -.+|+..|+||.|+|+.+.+||+|.|++||||.+++..+.=++..
T Consensus       501 LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG  545 (775)
T KOG0319|consen  501 LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG  545 (775)
T ss_pred             eeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC
Confidence            347999999999999999999999999999999998876555443

>KOG0283|consensus

Probab=98.18  E-value=2e-06  Score=68.22  Aligned_cols=37  Identities=19%  Similarity=0.440  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCe
Q psy11104         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        12 ~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      .|+..|+||+|||. .++++||+-||.||||++...+.
T Consensus       407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V  444 (712)
T KOG0283|consen  407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV  444 (712)
T ss_pred             ecCCeeEEEEecccCCCcEeecccccceEEeecCcCee
Confidence            69999999999996 89999999999999999877653

>KOG0292|consensus

Probab=98.15  E-value=1.7e-06  Score=70.43  Aligned_cols=44  Identities=23%  Similarity=0.307  Sum_probs=40.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      .|.++|+.|+|||.+.+++|||+|-+||+|++++.++..++..+
T Consensus        49 eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GH   92 (1202)
T KOG0292|consen   49 EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH   92 (1202)
T ss_pred             ccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccc
Confidence            69999999999999999999999999999999999887776553

>KOG0273|consensus

Probab=98.15  E-value=2.5e-06  Score=65.32  Aligned_cols=44  Identities=23%  Similarity=0.370  Sum_probs=37.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      .|.++|+++.|+|.|.+|+|+|+|+++|||+...+...-.+++|
T Consensus       357 GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H  400 (524)
T KOG0273|consen  357 GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH  400 (524)
T ss_pred             cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh
Confidence            59999999999999999999999999999997766655555544

>KOG0273|consensus

Probab=98.14  E-value=2.8e-06  Score=65.09  Aligned_cols=39  Identities=23%  Similarity=0.329  Sum_probs=35.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      .|+.+|++|+|+|||+++|+|+.||.|.+|++++++..=
T Consensus       450 kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~  488 (524)
T KOG0273|consen  450 KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK  488 (524)
T ss_pred             cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence            689999999999999999999999999999998876443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.14  E-value=1.8e-05  Score=50.07  Aligned_cols=44  Identities=16%  Similarity=0.191  Sum_probs=36.7

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      ...|...+.++.|+|++++|++++.||.|++||+++++....+.
T Consensus        47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~   90 (289)
T cd00200          47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT   90 (289)
T ss_pred             EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe
Confidence            34678889999999999999999999999999998865444443

>KOG0275|consensus

Probab=98.13  E-value=4.3e-07  Score=67.90  Aligned_cols=41  Identities=22%  Similarity=0.398  Sum_probs=35.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      +...|.|++||.|.++||||+.||.||+|.++++.+.-++.
T Consensus       262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd  302 (508)
T KOG0275|consen  262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD  302 (508)
T ss_pred             cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh
Confidence            45789999999999999999999999999999987544443

>KOG1273|consensus

Probab=98.13  E-value=5.2e-06  Score=61.66  Aligned_cols=46  Identities=15%  Similarity=0.166  Sum_probs=39.3

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      +|--+|-.+|.|++||+||..|.|+|.|..|++||+..+...-++.
T Consensus        59 r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   59 RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            3444799999999999999999999999999999999888544433

>KOG0772|consensus

Probab=98.13  E-value=2.1e-06  Score=66.64  Aligned_cols=48  Identities=15%  Similarity=0.228  Sum_probs=41.7

Q ss_pred             eeeeecCCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104          6 SKKIAIPNNT--KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus         6 ~~~I~~~~~~--~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      .-+|+.+|..  .|.||+||+||++|+|=|.|+++|+||++.-++++-..
T Consensus       354 ~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~  403 (641)
T KOG0772|consen  354 VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR  403 (641)
T ss_pred             ceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence            3467778887  99999999999999999999999999999888776443

>KOG0643|consensus

Probab=98.09  E-value=8.2e-06  Score=59.43  Aligned_cols=41  Identities=15%  Similarity=0.140  Sum_probs=38.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      +|.+.|+|++.+-+..+++||+.|.++||||++++++....
T Consensus        50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~   90 (327)
T KOG0643|consen   50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW   90 (327)
T ss_pred             CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe
Confidence            79999999999999999999999999999999999976653

>KOG0310|consensus

Probab=98.09  E-value=4.8e-06  Score=63.59  Aligned_cols=48  Identities=13%  Similarity=0.205  Sum_probs=38.0

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEEecccccc
Q psy11104         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNL   60 (70)
Q Consensus        12 ~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~   60 (70)
                      +|.+.|+|.+|+|- +.+++|||.||+||+||+++.... ....+++.-+
T Consensus       151 ~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~-v~elnhg~pV  199 (487)
T KOG0310|consen  151 GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR-VVELNHGCPV  199 (487)
T ss_pred             CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce-eEEecCCCce
Confidence            79999999999997 558999999999999999988633 3344444433

>KOG0641|consensus

Probab=98.08  E-value=7.2e-06  Score=59.18  Aligned_cols=39  Identities=26%  Similarity=0.462  Sum_probs=34.2

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      .+-|++.|+|.+|||+|++||+|+.|++||+-....+.+
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~  123 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTC  123 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccc
Confidence            456889999999999999999999999999987765543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.08  E-value=7.1e-06  Score=64.12  Aligned_cols=34  Identities=12%  Similarity=0.352  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      .|.+.|.+++|+|+|++||+||.||+|+|||...
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~  514 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECES  514 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCc
Confidence            3788999999999999999999999999999753

>KOG0286|consensus

Probab=98.06  E-value=1.7e-05  Score=58.18  Aligned_cols=46  Identities=17%  Similarity=0.243  Sum_probs=41.0

Q ss_pred             EeeeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeE
Q psy11104          4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus         4 ~~~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      .+.+.+-++|...|+++.|++|.++|+|+|.||.+.|||.-+..+.
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~   90 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV   90 (343)
T ss_pred             eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce
Confidence            4567888999999999999999999999999999999998766543

>KOG0282|consensus

Probab=98.06  E-value=4.1e-06  Score=64.06  Aligned_cols=44  Identities=14%  Similarity=0.032  Sum_probs=41.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      .|+.+|..++||.+|..+.|+|.|++||+||++++++..+++.+
T Consensus       256 gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~  299 (503)
T KOG0282|consen  256 GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD  299 (503)
T ss_pred             cchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC
Confidence            79999999999999999999999999999999999999887775

>KOG2110|consensus

Probab=98.05  E-value=2e-05  Score=58.92  Aligned_cols=44  Identities=11%  Similarity=0.155  Sum_probs=39.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGL-LKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~-IklWdi~~~~~~~~~~~~   55 (70)
                      .|.+.+-|++|||+|.+|||+|+.|+ ||++.+.+++....++++
T Consensus       171 aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG  215 (391)
T KOG2110|consen  171 AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG  215 (391)
T ss_pred             ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC
Confidence            89999999999999999999999995 799999998877766654

>KOG0973|consensus

Probab=98.04  E-value=1.1e-05  Score=65.63  Aligned_cols=53  Identities=9%  Similarity=0.149  Sum_probs=45.7

Q ss_pred             EeeeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccc
Q psy11104          4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE   57 (70)
Q Consensus         4 ~~~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~   57 (70)
                      |++..+..+|.+.|..|+|+|++.+|||+|.|++|.|||-++.+ .+....+|+
T Consensus       119 wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~-~~~vl~~H~  171 (942)
T KOG0973|consen  119 WKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE-LLKVLRGHQ  171 (942)
T ss_pred             eeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce-eeeeeeccc
Confidence            78888888999999999999999999999999999999999994 444444433

>KOG0643|consensus

Probab=98.02  E-value=4e-06  Score=61.01  Aligned_cols=36  Identities=22%  Similarity=0.443  Sum_probs=32.2

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      ++|-++||+|+|||+|+..+|||+||.||+.-.+..
T Consensus       284 kGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  284 KGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             cccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence            478999999999999999999999999999865543

>KOG0284|consensus

Probab=98.01  E-value=1.8e-06  Score=65.26  Aligned_cols=61  Identities=18%  Similarity=0.383  Sum_probs=44.5

Q ss_pred             eeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104          6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus         6 ~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      .+.|.-+|.+.|+++.|+++|.+++||..||.||+|+..-...-+.-..+.|..-+..|-|
T Consensus       130 FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSp  190 (464)
T KOG0284|consen  130 FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP  190 (464)
T ss_pred             HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCC
Confidence            3456668999999999999999999999999999999765543332222224444444443

>KOG1407|consensus

Probab=98.00  E-value=4.9e-06  Score=60.34  Aligned_cols=34  Identities=18%  Similarity=0.508  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      +|.+...||+|+|+|+++|+||.|-.+.|||++.
T Consensus       187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDE  220 (313)
T ss_pred             cCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence            6888899999999999999999999999999764

>KOG0265|consensus

Probab=97.99  E-value=1.7e-05  Score=58.20  Aligned_cols=41  Identities=15%  Similarity=-0.004  Sum_probs=37.7

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      +.|++.|..+.|++|+..|.|+|.|++++.||.+++++.-.
T Consensus        87 kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk  127 (338)
T KOG0265|consen   87 KGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK  127 (338)
T ss_pred             ccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh
Confidence            48999999999999999999999999999999999976543

>KOG0647|consensus

Probab=97.98  E-value=1.9e-05  Score=58.04  Aligned_cols=37  Identities=19%  Similarity=0.274  Sum_probs=34.6

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ..|.++|.+++|+-||..+++|+.||.+++||+.++.
T Consensus        69 ~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   69 QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             hccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            4688999999999999999999999999999999883

>KOG0277|consensus

Probab=97.98  E-value=1.8e-05  Score=57.31  Aligned_cols=46  Identities=15%  Similarity=0.180  Sum_probs=41.4

Q ss_pred             cCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEEecc
Q psy11104         11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMIILFQ   56 (70)
Q Consensus        11 ~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~~~~   56 (70)
                      ++|++.|....|||. ++++|++|.||++|+||++.......+.+++
T Consensus       144 ~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~  190 (311)
T KOG0277|consen  144 NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN  190 (311)
T ss_pred             cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc
Confidence            479999999999998 8999999999999999999887777777776

>KOG0289|consensus

Probab=97.98  E-value=1.1e-05  Score=61.63  Aligned_cols=36  Identities=25%  Similarity=0.533  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      +|.++|.+|+|+-||.+||++.+|+.|++||++..+
T Consensus       387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence            699999999999999999999999999999997665

>KOG1034|consensus

Probab=97.98  E-value=9.5e-06  Score=60.25  Aligned_cols=54  Identities=9%  Similarity=0.157  Sum_probs=44.1

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEEe---cccccccccCC
Q psy11104         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMIIL---FQERNLQDKLP   65 (70)
Q Consensus        12 ~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~~---~~~~~~~~~~~   65 (70)
                      +|++.|+.|.++|+ .+++.|||.|.+||+|+++++.+.+.+..   +....++.+|-
T Consensus       133 ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~  190 (385)
T KOG1034|consen  133 GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS  190 (385)
T ss_pred             ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence            79999999999998 78999999999999999999988887654   22235555543

>KOG1009|consensus

Probab=97.96  E-value=1.1e-05  Score=60.79  Aligned_cols=53  Identities=15%  Similarity=0.305  Sum_probs=47.0

Q ss_pred             EEeeeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104          3 IYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus         3 ~~~~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      .|+.+++-..|...|..++|+||+.++++|+-|.++++||+..+........+
T Consensus       112 ~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh  164 (434)
T KOG1009|consen  112 KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH  164 (434)
T ss_pred             ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence            38888899999999999999999999999999999999999998766654443

>KOG0313|consensus

Probab=97.96  E-value=1.3e-05  Score=60.29  Aligned_cols=53  Identities=15%  Similarity=0.192  Sum_probs=41.5

Q ss_pred             ecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC-eEEEEEecccccccc
Q psy11104         10 AIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVS-LTIMIILFQERNLQD   62 (70)
Q Consensus        10 ~~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~-~~~~~~~~~~~~~~~   62 (70)
                      ..+|+..|.++.|||. ..+|+||+.||++|+||+++.. -...+..+.+..+++
T Consensus       341 ~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v  395 (423)
T KOG0313|consen  341 LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV  395 (423)
T ss_pred             eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEE
Confidence            3478999999999997 5679999999999999999988 445555554444443

>KOG0306|consensus

Probab=97.96  E-value=9.7e-06  Score=64.95  Aligned_cols=55  Identities=15%  Similarity=0.164  Sum_probs=50.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      +|.=+|.|++.|||+++|+|||.|+.||+|-++=+.+-=++++++....+.+|-|
T Consensus       548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P  602 (888)
T KOG0306|consen  548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP  602 (888)
T ss_pred             ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc
Confidence            7999999999999999999999999999999988888888888888778888766

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.95  E-value=4.8e-05  Score=41.51  Aligned_cols=33  Identities=30%  Similarity=0.657  Sum_probs=29.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      -...|.+++|+|...+||.|.+||.|.++++..
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            356799999999999999999999999999843

>KOG0296|consensus

Probab=97.94  E-value=1.7e-05  Score=59.34  Aligned_cols=53  Identities=17%  Similarity=0.206  Sum_probs=47.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKL   64 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~   64 (70)
                      .|++.|.+|+.+|+.+++||||+|..-.||++.++.+.+.+..+++..++..|
T Consensus        62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F  114 (399)
T KOG0296|consen   62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF  114 (399)
T ss_pred             hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE
Confidence            79999999999999999999999999999999999988888887776666544

>KOG0646|consensus

Probab=97.92  E-value=1.4e-05  Score=60.99  Aligned_cols=38  Identities=18%  Similarity=0.377  Sum_probs=33.5

Q ss_pred             ecCCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         10 AIPNNT--KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        10 ~~~~~~--~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .++|.+  .|.|++.|-||.+|+||++||.|+|||+.+.+
T Consensus       271 ~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  271 LVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             eccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence            345666  99999999999999999999999999987654

>KOG1272|consensus

Probab=97.92  E-value=1.6e-05  Score=61.08  Aligned_cols=43  Identities=16%  Similarity=0.128  Sum_probs=38.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      -|.++|.+|+++++|.++||.|.|..++|||++.-.+..+.+.
T Consensus       291 cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t  333 (545)
T KOG1272|consen  291 CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT  333 (545)
T ss_pred             hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence            3889999999999999999999999999999998887666555

>KOG0772|consensus

Probab=97.91  E-value=1.6e-05  Score=61.91  Aligned_cols=49  Identities=14%  Similarity=0.314  Sum_probs=40.6

Q ss_pred             eecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEEeccc
Q psy11104          9 IAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE   57 (70)
Q Consensus         9 I~~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~   57 (70)
                      +.++|...++|.+|||+ -+.+.|+|.||++||||+...+....++....
T Consensus       263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence            45689999999999998 56799999999999999987776666666533

>KOG2111|consensus

Probab=97.89  E-value=4.9e-05  Score=56.06  Aligned_cols=48  Identities=15%  Similarity=0.290  Sum_probs=43.1

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCCeEEEEEec
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDG-LLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg-~IklWdi~~~~~~~~~~~~   55 (70)
                      .|-++|.+.|.|++.+.+|.++||+|..| .|||||..+++...-++.+
T Consensus       175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG  223 (346)
T KOG2111|consen  175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG  223 (346)
T ss_pred             eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC
Confidence            45568999999999999999999999999 6999999999988877765

>KOG0285|consensus

Probab=97.87  E-value=4.5e-05  Score=57.49  Aligned_cols=48  Identities=10%  Similarity=0.178  Sum_probs=43.2

Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecc
Q psy11104          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQ   56 (70)
Q Consensus         9 I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~   56 (70)
                      .-.+|..+|..|.+.|-...++|||.|++||+||++.++.++++..++
T Consensus       272 ~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hk  319 (460)
T KOG0285|consen  272 VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHK  319 (460)
T ss_pred             EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccc
Confidence            344799999999999998899999999999999999999999887764

>KOG1274|consensus

Probab=97.87  E-value=2.8e-05  Score=63.02  Aligned_cols=41  Identities=32%  Similarity=0.411  Sum_probs=33.3

Q ss_pred             eeeeeecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104          5 LSKKIAIPNN-TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus         5 ~~~~I~~~~~-~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      .+++....+. +.+.++.|+|+|+|||+++.||.|-|||+++
T Consensus       222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  222 LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            3444444333 4499999999999999999999999999986

>KOG0265|consensus

Probab=97.86  E-value=3.3e-05  Score=56.76  Aligned_cols=39  Identities=13%  Similarity=0.254  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      .|.+.|+++.|+|+|..|||||.|..|-+|++..+.+-.
T Consensus        45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~   83 (338)
T KOG0265|consen   45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF   83 (338)
T ss_pred             CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce
Confidence            588999999999999999999999999999965554333

>KOG0649|consensus

Probab=97.85  E-value=4.8e-05  Score=55.16  Aligned_cols=45  Identities=22%  Similarity=0.230  Sum_probs=36.9

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .++|++.|.|+.--.....|.||++||++|+||.++++.+-++.-
T Consensus       152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~  196 (325)
T KOG0649|consen  152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP  196 (325)
T ss_pred             EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc
Confidence            458999999999843445678999999999999999997766554

>KOG0973|consensus

Probab=97.85  E-value=1.9e-05  Score=64.19  Aligned_cols=33  Identities=24%  Similarity=0.562  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~   44 (70)
                      .|.+.|+||-|+|||++||+||+|+.|-||+..
T Consensus        67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~   99 (942)
T KOG0973|consen   67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERA   99 (942)
T ss_pred             cccCceeEEEECCCCCeEeeccCcceEEEeeec
Confidence            588999999999999999999999999999977

>KOG0288|consensus

Probab=97.85  E-value=2.7e-05  Score=59.05  Aligned_cols=40  Identities=18%  Similarity=0.312  Sum_probs=35.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      +..+.+.|||++.|+|+||.||.|+||++.+++....+-.
T Consensus       388 sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~  427 (459)
T KOG0288|consen  388 SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL  427 (459)
T ss_pred             cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc
Confidence            4588999999999999999999999999999987665444

>KOG0277|consensus

Probab=97.85  E-value=1.7e-05  Score=57.54  Aligned_cols=59  Identities=12%  Similarity=0.132  Sum_probs=47.5

Q ss_pred             ecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCCCc
Q psy11104         10 AIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPPLM   68 (70)
Q Consensus        10 ~~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~~~   68 (70)
                      .+.|...|.+++|++- .+.+.++|-||+||||+..-.+...++..+.....+++|-|..
T Consensus       100 ~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~  159 (311)
T KOG0277|consen  100 FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI  159 (311)
T ss_pred             HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCC
Confidence            3479999999999997 7788889999999999987777666655555567777777753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.83  E-value=6.4e-05  Score=50.39  Aligned_cols=39  Identities=13%  Similarity=0.285  Sum_probs=31.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCeEEE
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTVSLTIM   51 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~D---g~IklWdi~~~~~~~~   51 (70)
                      +.+.+++|.|||+|++||.||.+   |.|.+||.++.+....
T Consensus        99 ~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~  140 (194)
T PF08662_consen   99 GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST  140 (194)
T ss_pred             cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec
Confidence            45678999999999999998754   5699999986655443

>KOG2048|consensus

Probab=97.80  E-value=5.2e-05  Score=59.93  Aligned_cols=41  Identities=22%  Similarity=0.433  Sum_probs=36.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .+.|.+|+|+|++..||+|+.||.||+||..++........
T Consensus       154 ~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~  194 (691)
T KOG2048|consen  154 KSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM  194 (691)
T ss_pred             cceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee
Confidence            48999999999999999999999999999999988774333

>KOG1446|consensus

Probab=97.80  E-value=4.5e-05  Score=55.73  Aligned_cols=39  Identities=13%  Similarity=0.096  Sum_probs=35.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      +|...|++|+-+|-++.+.|+|.|++||+||++..++.-
T Consensus        98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg  136 (311)
T KOG1446|consen   98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG  136 (311)
T ss_pred             CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce
Confidence            799999999999999999999999999999999666443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.77  E-value=0.00011  Score=48.61  Aligned_cols=42  Identities=14%  Similarity=0.238  Sum_probs=34.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCeEEEEEe
Q psy11104         13 NNTKVNCLAWHQNQGWIAVG-GDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasG-g~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      +...+.+++|+|+|++|+++ +.+|.|++||+++++..-++..
T Consensus       247 ~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       247 VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence            45678999999999998876 5799999999999886555543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1034|consensus

Probab=97.77  E-value=3e-05  Score=57.67  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      .|++.|.+|+|+++|.+|||||.|.++++|++...
T Consensus       179 gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  179 GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             cccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            69999999999999999999999999999998843

>KOG2445|consensus

Probab=97.76  E-value=5.3e-05  Score=55.96  Aligned_cols=44  Identities=11%  Similarity=0.108  Sum_probs=37.7

Q ss_pred             EeeeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104          4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus         4 ~~~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      +..+.|--.|.+-|.|+.|++.|+.+|+|+.|++|+|||..++.
T Consensus         3 ~s~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s   46 (361)
T KOG2445|consen    3 FSMAPIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS   46 (361)
T ss_pred             ccccccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC
Confidence            34566777899999999999999999999999999999964433

>KOG0274|consensus

Probab=97.76  E-value=8e-05  Score=57.41  Aligned_cols=52  Identities=15%  Similarity=-0.042  Sum_probs=45.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccccccccc
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDK   63 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~   63 (70)
                      +|.+.|+++++..-+.+|++|+.|.++|+||+.++.+...+..+++.+.+-.
T Consensus       247 GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~  298 (537)
T KOG0274|consen  247 GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLT  298 (537)
T ss_pred             CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEE
Confidence            6999999999977689999999999999999999999999887776655443

>KOG0318|consensus

Probab=97.75  E-value=9.1e-05  Score=57.65  Aligned_cols=44  Identities=18%  Similarity=0.207  Sum_probs=40.3

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ..|...|+||.|||||+++||.|.||+|.++|=+++++...+..
T Consensus       187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~  230 (603)
T KOG0318|consen  187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED  230 (603)
T ss_pred             cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC
Confidence            36888999999999999999999999999999999998887763

>KOG0305|consensus

Probab=97.75  E-value=3e-05  Score=59.40  Aligned_cols=44  Identities=16%  Similarity=0.231  Sum_probs=37.3

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ..|.+.|..++|++|+.++||||.|+.+.|||..+......+..
T Consensus       298 ~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~  341 (484)
T KOG0305|consen  298 QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE  341 (484)
T ss_pred             hcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec
Confidence            46999999999999999999999999999999966555554443

>KOG1445|consensus

Probab=97.75  E-value=3.7e-05  Score=61.45  Aligned_cols=40  Identities=20%  Similarity=0.323  Sum_probs=36.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      +|.+.|..++|||+|+.+||.+.||+||+++.++..+.+.
T Consensus       718 gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~  757 (1012)
T KOG1445|consen  718 GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY  757 (1012)
T ss_pred             cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc
Confidence            7999999999999999999999999999999888776654

>KOG1036|consensus

Probab=97.75  E-value=1.5e-05  Score=58.34  Aligned_cols=41  Identities=27%  Similarity=0.444  Sum_probs=34.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      -+|++|+|||--+.+||||.||.|.+||+.+.+.-+.+..+
T Consensus       233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~  273 (323)
T KOG1036|consen  233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY  273 (323)
T ss_pred             EEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence            37999999999999999999999999999887755444443

>KOG0645|consensus

Probab=97.73  E-value=0.00016  Score=52.74  Aligned_cols=50  Identities=14%  Similarity=0.203  Sum_probs=41.9

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCCeEEEEEeccc
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD-TVSLTIMIILFQE   57 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~-~~~~~~~~~~~~~   57 (70)
                      .+-.+|.+.|-.+.|||...+|+|+|.|.+||+|+-. .+...+.-..+.+
T Consensus       144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~  194 (312)
T KOG0645|consen  144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGH  194 (312)
T ss_pred             eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCc
Confidence            4566899999999999999999999999999999876 6666666555544

>KOG1408|consensus

Probab=97.70  E-value=3.7e-05  Score=61.99  Aligned_cols=61  Identities=16%  Similarity=0.237  Sum_probs=50.5

Q ss_pred             eeeeecCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104          6 SKKIAIPNNTKVNCLAWHQNQGWIAVGG--DDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus         6 ~~~I~~~~~~~V~~va~spdg~~LasGg--~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      +.||.+.++.++.||+|||+|+++|+|-  ..-.+|+|+++....+.-+..++-..+|+.|-|
T Consensus        70 Q~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp  132 (1080)
T KOG1408|consen   70 QSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSP  132 (1080)
T ss_pred             hhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecC
Confidence            4577888899999999999999999974  666899999999887776666655678888876

>KOG0316|consensus

Probab=97.70  E-value=0.00011  Score=53.09  Aligned_cols=47  Identities=11%  Similarity=0.047  Sum_probs=38.7

Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus         9 I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      |-..+.+.|+++.||-||++..+||.|.+||+|+...+...=+...+
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh   58 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH   58 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC
Confidence            44567899999999999999999999999999998877654444433

>KOG0294|consensus

Probab=97.68  E-value=8.4e-05  Score=54.99  Aligned_cols=54  Identities=17%  Similarity=0.171  Sum_probs=44.1

Q ss_pred             eEEeeeeee-----cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104          2 FIYLSKKIA-----IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus         2 ~~~~~~~I~-----~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      -+|+.+.-+     ++|.+.|+.|+.||.|++-.|-|.|+.+|+||+-.++.+...-..
T Consensus       110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~  168 (362)
T KOG0294|consen  110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK  168 (362)
T ss_pred             EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC
Confidence            356655443     489999999999999999999999999999999888866655444

>KOG0305|consensus

Probab=97.68  E-value=7.3e-05  Score=57.36  Aligned_cols=35  Identities=23%  Similarity=0.234  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      +|...|..+++||||+.+++|+.|.++|+|++-..
T Consensus       429 gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  429 GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            79999999999999999999999999999998653

>KOG0303|consensus

Probab=97.67  E-value=9.5e-05  Score=56.10  Aligned_cols=45  Identities=9%  Similarity=0.143  Sum_probs=39.8

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      .|...|.+.|.+++||-||.+|+|.+.|+.|||||.++++.....
T Consensus       167 li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~  211 (472)
T KOG0303|consen  167 LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG  211 (472)
T ss_pred             eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence            355679999999999999999999999999999999998766543

>KOG0322|consensus

Probab=97.66  E-value=3.1e-05  Score=56.37  Aligned_cols=33  Identities=21%  Similarity=0.309  Sum_probs=31.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKL   43 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi   43 (70)
                      +-|++.|++++|+|+.+++|.+|.|+.|.+|++
T Consensus       290 kyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  290 KYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            458899999999999999999999999999986

>KOG0267|consensus

Probab=97.66  E-value=6.1e-05  Score=60.25  Aligned_cols=42  Identities=24%  Similarity=0.455  Sum_probs=36.1

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeE
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      ++.+.|..-|+++.|+|+|.++++|++|.+++|||...++..
T Consensus       148 ~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~  189 (825)
T KOG0267|consen  148 HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS  189 (825)
T ss_pred             eeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc
Confidence            455678888999999999999999999999999998665543

>KOG1274|consensus

Probab=97.65  E-value=6.6e-05  Score=60.92  Aligned_cols=45  Identities=18%  Similarity=0.290  Sum_probs=39.3

Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus         9 I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      .-.+|.++|.+|+|+|++++||+.+.||.|++||++++.+..++.
T Consensus       133 ~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~  177 (933)
T KOG1274|consen  133 VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT  177 (933)
T ss_pred             eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence            345899999999999999999999999999999999887655443

>KOG2096|consensus

Probab=97.64  E-value=6e-05  Score=56.21  Aligned_cols=33  Identities=15%  Similarity=0.208  Sum_probs=31.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~   44 (70)
                      +|++.|.+.+||++.+.++|.|.||++||||+.
T Consensus       276 GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  276 GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             cchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            799999999999999999999999999999964

>KOG1332|consensus

Probab=97.64  E-value=4.1e-05  Score=55.29  Aligned_cols=48  Identities=27%  Similarity=0.484  Sum_probs=41.4

Q ss_pred             EEeeeeeecCCCCCeEEEEEcCC---C-----------CEEEEEeCCCcEEEEECCCCCeEE
Q psy11104          3 IYLSKKIAIPNNTKVNCLAWHQN---Q-----------GWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus         3 ~~~~~~I~~~~~~~V~~va~spd---g-----------~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      -|..++|.+.|.-.|++|+|.|-   |           +.|||||.|.+||||+..+++...
T Consensus       138 ~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~  199 (299)
T KOG1332|consen  138 GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL  199 (299)
T ss_pred             CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh
Confidence            36778999999999999999996   4           569999999999999998875433

>KOG4283|consensus

Probab=97.61  E-value=0.0001  Score=54.63  Aligned_cols=41  Identities=27%  Similarity=0.481  Sum_probs=37.5

Q ss_pred             eeeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC
Q psy11104          7 KKIAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus         7 ~~I~~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ++++.+|++.|+++...+- |+++.|||.||.|.+||++...
T Consensus        36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t   77 (397)
T KOG4283|consen   36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNAT   77 (397)
T ss_pred             cceeccCCCccceeeeccccceEEeecCCCccEEEEEecccc
Confidence            5788899999999999997 9999999999999999997654

>KOG1188|consensus

Probab=97.59  E-value=0.00011  Score=54.76  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=33.5

Q ss_pred             cCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC
Q psy11104         11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        11 ~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ..|.+.|++|.|+|+ .++|+|||-||.|.|+|++.+.
T Consensus       162 eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  162 ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            369999999999997 8899999999999999987654

>KOG1538|consensus

Probab=97.58  E-value=8.8e-05  Score=59.67  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=31.8

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~   44 (70)
                      ++|.+.|+||+|+.||+.+|||+.|+.|.+|+-+
T Consensus        50 KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k   83 (1081)
T KOG1538|consen   50 KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK   83 (1081)
T ss_pred             ccccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence            5799999999999999999999999999999854

>KOG0281|consensus

Probab=97.57  E-value=4.4e-05  Score=57.58  Aligned_cols=40  Identities=20%  Similarity=0.301  Sum_probs=34.4

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      -.+|.+.|.|+.|  +...|+|||.|.+|++||+++++..-+
T Consensus       233 L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~t  272 (499)
T KOG0281|consen  233 LTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNT  272 (499)
T ss_pred             hhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhH
Confidence            3489999999999  667999999999999999999874433

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.57  E-value=0.00028  Score=47.30  Aligned_cols=40  Identities=18%  Similarity=0.346  Sum_probs=31.6

Q ss_pred             eeeecCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCC
Q psy11104          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGD------DGLLKVLKLDTV   46 (70)
Q Consensus         7 ~~I~~~~~~~V~~va~spdg~~LasGg~------Dg~IklWdi~~~   46 (70)
                      +.|...+...+..++|+|||++|++++.      |+.++||++...
T Consensus       136 ~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  136 KKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            3445555567899999999999999864      889999998643

>KOG0306|consensus

Probab=97.56  E-value=0.00013  Score=58.67  Aligned_cols=53  Identities=15%  Similarity=0.077  Sum_probs=46.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKL   64 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~   64 (70)
                      +|...|+++.|...|..|||||.|+.|.+||+-...-.++++.+++..++..|
T Consensus       105 gHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F  157 (888)
T KOG0306|consen  105 GHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALF  157 (888)
T ss_pred             ccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhc
Confidence            69999999999999999999999999999999988888888887776555443

>KOG0307|consensus

Probab=97.56  E-value=5.4e-05  Score=62.18  Aligned_cols=41  Identities=20%  Similarity=0.255  Sum_probs=35.6

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        12 ~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      .|.+.|.+++||+. +++||||++||.|.|||+..-+.+...
T Consensus       114 ~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~  155 (1049)
T KOG0307|consen  114 KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP  155 (1049)
T ss_pred             ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC
Confidence            48999999999999 669999999999999999876655543

>KOG0270|consensus

Probab=97.55  E-value=2.9e-05  Score=59.06  Aligned_cols=43  Identities=26%  Similarity=0.369  Sum_probs=38.4

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        12 ~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .|++.|.+++||-+ -..|||||.|.+|++||+.+++....+..
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~  284 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH  284 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh
Confidence            58888999999998 67899999999999999999998877663

>KOG0276|consensus

Probab=97.54  E-value=0.00019  Score=57.01  Aligned_cols=56  Identities=13%  Similarity=0.087  Sum_probs=44.8

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccc-cccccCC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQER-NLQDKLP   65 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~-~~~~~~~   65 (70)
                      ..+|.+.|+||+-||...++.|+|+|-+||+||.+..=......-+|++ ..|..|-
T Consensus        93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fn  149 (794)
T KOG0276|consen   93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFN  149 (794)
T ss_pred             eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEec
Confidence            3489999999999999999999999999999999887666666666665 3344333

>KOG0289|consensus

Probab=97.53  E-value=9.5e-05  Score=56.55  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=31.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      .+.+.+|||||-++++|..||.+||||++++....
T Consensus       349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a  383 (506)
T KOG0289|consen  349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA  383 (506)
T ss_pred             eeEEeeEcCCceEEeccCCCceEEEEEcCCccccc
Confidence            48899999999999999999999999999987544

>KOG0640|consensus

Probab=97.53  E-value=9.3e-05  Score=55.20  Aligned_cols=33  Identities=18%  Similarity=0.433  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~   44 (70)
                      .|++++++-+|||||.++|+||.|.+|||.|+.
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildve  142 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVE  142 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCcceEEEeehh
Confidence            589999999999999999999999999999976

>KOG0267|consensus

Probab=97.49  E-value=3.1e-05  Score=61.87  Aligned_cols=40  Identities=18%  Similarity=0.406  Sum_probs=35.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      ..|.++|.||.|+++..+||.|+.||+||+||+...+..=
T Consensus        67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr  106 (825)
T KOG0267|consen   67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR  106 (825)
T ss_pred             eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh
Confidence            4689999999999999999999999999999999776443

>KOG0274|consensus

Probab=97.49  E-value=0.00023  Score=54.86  Aligned_cols=42  Identities=21%  Similarity=0.232  Sum_probs=36.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      +|.++|+|+..+  +.++++|+.||+|++||+.+.++.-.+..+
T Consensus       329 ~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH  370 (537)
T KOG0274|consen  329 GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH  370 (537)
T ss_pred             cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC
Confidence            599999999997  899999999999999999988776666654

>KOG1009|consensus

Probab=97.48  E-value=0.00013  Score=55.18  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~   44 (70)
                      .|...|++|-|+|+|++||||+++|.|-+|...
T Consensus        63 ~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~   95 (434)
T KOG1009|consen   63 RHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG   95 (434)
T ss_pred             CCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence            478899999999999999999999999999865

>KOG1446|consensus

Probab=97.46  E-value=0.00042  Score=50.76  Aligned_cols=48  Identities=17%  Similarity=0.138  Sum_probs=41.0

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      ++..+.++.|++++|+++|++++++++|.+++|+|..++++...+.-+
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk   55 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK   55 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc
Confidence            344456889999999999999999999999999999999887766554

>KOG0281|consensus

Probab=97.44  E-value=0.00012  Score=55.29  Aligned_cols=53  Identities=13%  Similarity=0.173  Sum_probs=42.6

Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccccccccc
Q psy11104          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDK   63 (70)
Q Consensus         9 I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~   63 (70)
                      +-.+|...|+.|.|  +.++|+|+|.|.+||+|++.+++..-.+.+++-...|.|
T Consensus       315 VLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ  367 (499)
T KOG0281|consen  315 VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ  367 (499)
T ss_pred             HHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehh
Confidence            33478899999999  457999999999999999999987777776666665554

>KOG0264|consensus

Probab=97.44  E-value=0.00013  Score=55.21  Aligned_cols=62  Identities=19%  Similarity=0.237  Sum_probs=45.8

Q ss_pred             eeeeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC--CCeEEEEEecccccccccCCCC
Q psy11104          6 SKKIAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDT--VSLTIMIILFQERNLQDKLPPL   67 (70)
Q Consensus         6 ~~~I~~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~--~~~~~~~~~~~~~~~~~~~~~~   67 (70)
                      .+.+...|.+.|+.|+|+|- ..+++++|+|+.+.|||+++  .+......++.--..|..|.|.
T Consensus       219 p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~  283 (422)
T KOG0264|consen  219 PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPF  283 (422)
T ss_pred             ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCC
Confidence            35677789999999999997 78899999999999999995  3333333333223556666664

>KOG0316|consensus

Probab=97.43  E-value=0.00023  Score=51.46  Aligned_cols=41  Identities=20%  Similarity=0.264  Sum_probs=35.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-eEEEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS-LTIMI   52 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~-~~~~~   52 (70)
                      .|.+.|++|.||-+...++|||.|.++|+||.++.. +++.+
T Consensus        99 gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi  140 (307)
T KOG0316|consen   99 GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI  140 (307)
T ss_pred             cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch
Confidence            799999999999999999999999999999987765 44443

>KOG1334|consensus

Probab=97.41  E-value=0.00014  Score=56.21  Aligned_cols=56  Identities=21%  Similarity=0.165  Sum_probs=48.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccc-cccccCCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQER-NLQDKLPPL   67 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~-~~~~~~~~~   67 (70)
                      +|.+.|+.|.|+..|..|+|||+|..|-+||..++....++.-+|-- .-|+||=|.
T Consensus       140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~  196 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF  196 (559)
T ss_pred             CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCC
Confidence            78999999999999999999999999999999999999888876553 456677664

>KOG0268|consensus

Probab=97.41  E-value=0.00012  Score=55.05  Aligned_cols=40  Identities=8%  Similarity=0.113  Sum_probs=35.6

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ++.+.|.+.|.+|+|||-|+-++|||.|.+|||+....+.
T Consensus       266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~  305 (433)
T KOG0268|consen  266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH  305 (433)
T ss_pred             hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence            3455788999999999999999999999999999987665

>KOG1407|consensus

Probab=97.40  E-value=0.00027  Score=51.45  Aligned_cols=48  Identities=17%  Similarity=0.220  Sum_probs=41.8

Q ss_pred             ecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEEeccc
Q psy11104         10 AIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE   57 (70)
Q Consensus        10 ~~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~   57 (70)
                      ...|.+.|..++|+|- ..++|+++.|.+||+||++++++..++....|
T Consensus        60 ~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e  108 (313)
T KOG1407|consen   60 YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE  108 (313)
T ss_pred             ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc
Confidence            3478899999999986 78999999999999999999999888776544

>KOG0282|consensus

Probab=97.36  E-value=8.1e-05  Score=57.14  Aligned_cols=51  Identities=18%  Similarity=0.328  Sum_probs=43.3

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccc
Q psy11104         12 PNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQD   62 (70)
Q Consensus        12 ~~~~~V~~va~sp-dg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~   62 (70)
                      +|+..|.++.|.| .+.+|+|||.|+.|+||++-.....++...+|...+.+
T Consensus       212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd  263 (503)
T KOG0282|consen  212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRD  263 (503)
T ss_pred             CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhh
Confidence            7999999999999 59999999999999999998877777777666554443

>KOG0293|consensus

Probab=97.35  E-value=0.00027  Score=54.04  Aligned_cols=42  Identities=19%  Similarity=0.414  Sum_probs=37.2

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      .+|..+|..|.||||.++|++||.|..+++||..++.....+
T Consensus       266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y  307 (519)
T KOG0293|consen  266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY  307 (519)
T ss_pred             ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc
Confidence            379999999999999999999999999999999998765443

>KOG0295|consensus

Probab=97.35  E-value=0.00033  Score=52.61  Aligned_cols=47  Identities=17%  Similarity=0.060  Sum_probs=42.2

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccc
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE   57 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~   57 (70)
                      .+|...|.+++|-|.|.+|+|++.|.+|+.|++.++-+.-++..+.|
T Consensus       190 ~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e  236 (406)
T KOG0295|consen  190 IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE  236 (406)
T ss_pred             cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH
Confidence            46778899999999999999999999999999999998888777655

>KOG1524|consensus

Probab=97.33  E-value=0.00017  Score=56.71  Aligned_cols=35  Identities=26%  Similarity=0.430  Sum_probs=32.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      +|.+-|.|++|||.+.+|+|||+|-.-|+||-...
T Consensus       184 AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~  218 (737)
T KOG1524|consen  184 AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA  218 (737)
T ss_pred             ccCcEEEEeecCccccceeecCCceeEEeecccCc
Confidence            69999999999999999999999999999995443

>KOG0290|consensus

Probab=97.32  E-value=0.00027  Score=52.19  Aligned_cols=34  Identities=26%  Similarity=0.474  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q psy11104         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        12 ~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~   45 (70)
                      +|++.|++|+|.|. ...|+|||+|..+-|||+..
T Consensus       285 ~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  285 NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             cCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            59999999999998 78999999999999999864

>KOG0640|consensus

Probab=97.30  E-value=0.00036  Score=52.13  Aligned_cols=45  Identities=9%  Similarity=0.130  Sum_probs=36.7

Q ss_pred             EeeeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104          4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus         4 ~~~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      |.+.+=.-.|.+.|++|.+|+.|++.++||.||.|||||=-++++
T Consensus       251 fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC  295 (430)
T KOG0640|consen  251 FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC  295 (430)
T ss_pred             eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH
Confidence            344444456899999999999999999999999999999555443

>KOG1332|consensus

Probab=97.30  E-value=0.00052  Score=49.70  Aligned_cols=37  Identities=19%  Similarity=0.153  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEEc-C-CCCEEEEEeCCCcEEEEECCCCCe
Q psy11104         12 PNNTKVNCLAWH-Q-NQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        12 ~~~~~V~~va~s-p-dg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      +|.++|..++|- | .|.+|||++.||.|.||...+++.
T Consensus        54 Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w   92 (299)
T KOG1332|consen   54 GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW   92 (299)
T ss_pred             CCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch
Confidence            699999999995 4 499999999999999999888763

>KOG0299|consensus

Probab=97.29  E-value=0.00033  Score=53.58  Aligned_cols=36  Identities=22%  Similarity=0.373  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .|...+.+++.||||++||+|+.|..|.||+.++.+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e  235 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE  235 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc
Confidence            678899999999999999999999999999988765

>KOG4328|consensus

Probab=97.25  E-value=0.00025  Score=54.34  Aligned_cols=33  Identities=18%  Similarity=0.242  Sum_probs=29.6

Q ss_pred             CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q psy11104         13 NNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        13 ~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~   45 (70)
                      |...|++|++||. -.+|||||.|++.||||++.
T Consensus       321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~  354 (498)
T KOG4328|consen  321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ  354 (498)
T ss_pred             hhcccceeecCCCCchheeecccCcceeeeehhh
Confidence            6679999999998 67799999999999999864

>KOG0294|consensus

Probab=97.24  E-value=0.00043  Score=51.30  Aligned_cols=55  Identities=16%  Similarity=0.261  Sum_probs=41.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccccccccc-CCCCc
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDK-LPPLM   68 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~-~~~~~   68 (70)
                      +|.+.+.|||-  +|.++||||.|-+|+|+|.+...+.-.+.-+.-..+.-+ .||++
T Consensus        41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S   96 (362)
T KOG0294|consen   41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS   96 (362)
T ss_pred             ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc
Confidence            58899999998  689999999999999999988776655555544444434 35553

>KOG0268|consensus

Probab=97.24  E-value=0.0001  Score=55.42  Aligned_cols=45  Identities=27%  Similarity=0.312  Sum_probs=38.0

Q ss_pred             cCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         11 IPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        11 ~~~~~~V~~va~spdg-~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      -+|...|.|++=||+. ..+|||+.||.|+|||+....+.-++.++
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH  108 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH  108 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc
Confidence            3689999999999995 88999999999999999887665555553

>KOG4227|consensus

Probab=97.23  E-value=0.00021  Score=54.80  Aligned_cols=47  Identities=23%  Similarity=0.352  Sum_probs=37.5

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CCeEEEEEeccc
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT-----VSLTIMIILFQE   57 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~-----~~~~~~~~~~~~   57 (70)
                      ..|.+.|++|.|+.++++|||||+|..+++|++..     -.++|.+-.++|
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H  104 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPH  104 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCcc
Confidence            36899999999999999999999999999998642     224555555555

>KOG0647|consensus

Probab=97.23  E-value=0.00061  Score=50.30  Aligned_cols=43  Identities=16%  Similarity=0.242  Sum_probs=36.8

Q ss_pred             CCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         12 PNNTKVNCLAWHQNQG--WIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        12 ~~~~~V~~va~spdg~--~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .|.++|.++.|=+...  .|+|||-|++||.||.+......++.+
T Consensus       111 ~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L  155 (347)
T KOG0647|consen  111 AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL  155 (347)
T ss_pred             ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence            5899999999977644  799999999999999998887776554

>KOG2919|consensus

Probab=97.21  E-value=0.00039  Score=51.95  Aligned_cols=49  Identities=18%  Similarity=0.232  Sum_probs=33.4

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCC-CCeEEEEEecccccccccCCCCc
Q psy11104         20 LAWHQNQGWIAVGGDDGLLKVLKLDT-VSLTIMIILFQERNLQDKLPPLM   68 (70)
Q Consensus        20 va~spdg~~LasGg~Dg~IklWdi~~-~~~~~~~~~~~~~~~~~~~~~~~   68 (70)
                      .+..|.|++||+|+.||.|++||++. +.++...........-..+-|.|
T Consensus       303 FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m  352 (406)
T KOG2919|consen  303 FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM  352 (406)
T ss_pred             EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc
Confidence            46678899999999999999999988 55454444333333333444443

>KOG1063|consensus

Probab=97.18  E-value=0.00028  Score=56.28  Aligned_cols=37  Identities=14%  Similarity=0.233  Sum_probs=34.1

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      .++|+.-|++.+|+|++.++||+|.|++|++|.....
T Consensus       614 ~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  614 LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             ccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            4679999999999999999999999999999998766

>KOG0642|consensus

Probab=97.16  E-value=0.00056  Score=53.37  Aligned_cols=32  Identities=25%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKL   43 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi   43 (70)
                      +|.++|.|++..++++++.|||.||+|+.|++
T Consensus       342 aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~  373 (577)
T KOG0642|consen  342 AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL  373 (577)
T ss_pred             cccCceEEEEecCCceEEEeeccCceeeeecc
Confidence            69999999999999999999999999999954

>KOG0974|consensus

Probab=97.16  E-value=0.00066  Score=55.61  Aligned_cols=41  Identities=12%  Similarity=0.134  Sum_probs=37.3

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      -..|.+.+..+.|+-||.++||.|+|.++|+|++++.+...
T Consensus       171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~  211 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG  211 (967)
T ss_pred             ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC
Confidence            34688999999999999999999999999999999988665

>KOG0301|consensus

Probab=97.15  E-value=0.00082  Score=53.61  Aligned_cols=41  Identities=22%  Similarity=0.284  Sum_probs=35.1

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      .+|...|++++..+++..++|+|+|+++|||+.....++|+
T Consensus       216 ~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~  256 (745)
T KOG0301|consen  216 HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVIT  256 (745)
T ss_pred             eccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEe
Confidence            37899999999888899999999999999999885555544

>KOG0771|consensus

Probab=97.14  E-value=0.00044  Score=52.05  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .|.+.|.+++|+|||++||+-|.| ..+||+.+++.
T Consensus       184 ~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~  218 (398)
T KOG0771|consen  184 AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA  218 (398)
T ss_pred             hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence            588999999999999999999999 99999998883

>KOG0310|consensus

Probab=97.12  E-value=0.0013  Score=50.64  Aligned_cols=42  Identities=17%  Similarity=0.283  Sum_probs=36.3

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        12 ~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      +|..+|..+-|+|+ +.++++|++|+.+++||+.+....+.+.
T Consensus       108 ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~  150 (487)
T KOG0310|consen  108 AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS  150 (487)
T ss_pred             hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec
Confidence            79999999999998 7789999999999999999988643333

>KOG0308|consensus

Probab=97.11  E-value=0.00083  Score=53.44  Aligned_cols=49  Identities=18%  Similarity=0.205  Sum_probs=42.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccccccc
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQ   61 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~   61 (70)
                      ++...|+++|-|++|..|++||..+-+|+||.+++++...+. +|+.|+.
T Consensus       169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr  217 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVR  217 (735)
T ss_pred             CCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceE
Confidence            567789999999999999999999999999999999988887 4444544

>KOG0278|consensus

Probab=97.11  E-value=0.0016  Score=47.59  Aligned_cols=43  Identities=12%  Similarity=0.200  Sum_probs=37.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      +|.+.|..+-|-...+.|.|.++|++||+||.+++..+-++..
T Consensus       141 ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~  183 (334)
T KOG0278|consen  141 GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF  183 (334)
T ss_pred             CCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec
Confidence            5888999999988878888889999999999999988776654

>KOG0303|consensus

Probab=97.09  E-value=0.00032  Score=53.33  Aligned_cols=43  Identities=16%  Similarity=0.330  Sum_probs=38.8

Q ss_pred             cCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        11 ~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      .+|...|.-|+|||. .+.|+|+|.|.+|.+||+.++...+++.
T Consensus       128 ~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~  171 (472)
T KOG0303|consen  128 YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD  171 (472)
T ss_pred             eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC
Confidence            368999999999999 7889999999999999999999887755

>KOG2445|consensus

Probab=97.08  E-value=0.00064  Score=50.36  Aligned_cols=38  Identities=24%  Similarity=0.436  Sum_probs=33.0

Q ss_pred             eeeeec--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11104          6 SKKIAI--PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKL   43 (70)
Q Consensus         6 ~~~I~~--~~~~~V~~va~spdg~~LasGg~Dg~IklWdi   43 (70)
                      ..+|..  +|+++|+.+.||--|..|+|.|+||+||+|.-
T Consensus       278 v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  278 VEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             eEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            344542  79999999999999999999999999999974

>KOG1524|consensus

Probab=97.06  E-value=0.00011  Score=57.73  Aligned_cols=47  Identities=15%  Similarity=0.333  Sum_probs=36.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccccc
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERN   59 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~   59 (70)
                      +|.+.+.|-.|||||.-|.|.|+||.||+|. +++....++..+.|..
T Consensus       102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v  148 (737)
T KOG1524|consen  102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESI  148 (737)
T ss_pred             hhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCcee
Confidence            6899999999999999999999999999998 5554444433444433

>KOG0313|consensus

Probab=97.06  E-value=0.0015  Score=49.37  Aligned_cols=43  Identities=21%  Similarity=0.207  Sum_probs=37.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      +|.++|.+|.|++ ...+.|+|.|.+||.||+.++....++.-.
T Consensus       258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~  300 (423)
T KOG0313|consen  258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN  300 (423)
T ss_pred             ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC
Confidence            6999999999987 788999999999999999999877665554

>KOG0300|consensus

Probab=97.05  E-value=0.0012  Score=49.66  Aligned_cols=43  Identities=16%  Similarity=0.312  Sum_probs=35.2

Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus         9 I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      +.-+|...|.++.|+.+ ..++|||+|.+||+||+++-+.++..
T Consensus       352 VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplAT  394 (481)
T KOG0300|consen  352 VFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLAT  394 (481)
T ss_pred             eecccccceeEEEEecC-CceeecCCCceEEEeeeccccCccee
Confidence            44589999999999865 67899999999999999876655443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=97.03  E-value=0.0041  Score=40.46  Aligned_cols=41  Identities=24%  Similarity=0.308  Sum_probs=34.5

Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCeE
Q psy11104          9 IAIPNNTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTVSLT   49 (70)
Q Consensus         9 I~~~~~~~V~~va~spdg~~LasGg~-Dg~IklWdi~~~~~~   49 (70)
                      ....|...|.+++|+|++.++++++. |+.+++|+.......
T Consensus       150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (466)
T COG2319         150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL  191 (466)
T ss_pred             EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceE
Confidence            34478899999999999999999986 999999999874433

>KOG4640|consensus

Probab=97.02  E-value=0.0016  Score=51.55  Aligned_cols=39  Identities=21%  Similarity=0.420  Sum_probs=32.8

Q ss_pred             CCCCeE-EEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104         13 NNTKVN-CLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        13 ~~~~V~-~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      ++-.+. +++|.|||++||.|-.||+|++-|+.++...-.
T Consensus        60 p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   60 PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            455566 999999999999999999999999988764433

>KOG2394|consensus

Probab=97.01  E-value=0.00063  Score=53.29  Aligned_cols=34  Identities=26%  Similarity=0.544  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      +.|+..+|+|||++||+.|.||.+||+|..+.+.
T Consensus       291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL  324 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL  324 (636)
T ss_pred             ccccceeEcCCCceEEEEecCceEEEeeccHHHH
Confidence            5799999999999999999999999999887653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=96.99  E-value=0.0028  Score=41.24  Aligned_cols=38  Identities=32%  Similarity=0.502  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCeE
Q psy11104         12 PNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus        12 ~~~~~V~~va~spdg~-~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      .|...|.+++|+|++. .+++++.|+.|++||...+...
T Consensus       196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~  234 (466)
T COG2319         196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL  234 (466)
T ss_pred             cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEE
Confidence            4789999999999987 6777799999999988744433

>KOG1445|consensus

Probab=96.98  E-value=0.00026  Score=56.74  Aligned_cols=51  Identities=20%  Similarity=0.283  Sum_probs=44.1

Q ss_pred             eeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEEecccc
Q psy11104          8 KIAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMIILFQER   58 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~   58 (70)
                      +|-+.|...|.++.|||- ...||+++.|-+|+|||+++.+.-+++..+..+
T Consensus       671 ~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdq  722 (1012)
T KOG1445|consen  671 KILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQ  722 (1012)
T ss_pred             eeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCc
Confidence            455678999999999998 789999999999999999999888877766544

>KOG3914|consensus

Probab=96.96  E-value=0.00085  Score=50.43  Aligned_cols=37  Identities=16%  Similarity=0.234  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      +|...|..++.-++ +.|+|||.|+++++||+.++++.
T Consensus       192 GH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  192 GHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             ccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence            68888999998765 66999999999999999999876

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.93  E-value=0.0048  Score=40.72  Aligned_cols=37  Identities=8%  Similarity=0.056  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeEEE
Q psy11104         15 TKVNCLAWHQNQGWIA-VGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        15 ~~V~~va~spdg~~La-sGg~Dg~IklWdi~~~~~~~~   51 (70)
                      ....+++|+|+|++|+ ++..||.|++||+++++..-.
T Consensus       157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~  194 (300)
T TIGR03866       157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK  194 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee
Confidence            3567899999999874 555799999999998765443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0322|consensus

Probab=96.93  E-value=0.0011  Score=48.49  Aligned_cols=51  Identities=14%  Similarity=0.126  Sum_probs=39.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      .|..+.+-||++.+||+|-||.||+++.++..--..+..+.....+.+|.|
T Consensus       253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp  303 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP  303 (323)
T ss_pred             CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC
Confidence            578899999999999999999999999998875555444443444445554

>KOG2055|consensus

Probab=96.91  E-value=0.0016  Score=50.12  Aligned_cols=31  Identities=35%  Similarity=0.774  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~   44 (70)
                      -+.|+|++|||+|.++|.|.++|.+.+|.+.
T Consensus       482 vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  482 VGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            4679999999999999999999999999874

>KOG0771|consensus

Probab=96.90  E-value=0.00076  Score=50.80  Aligned_cols=30  Identities=27%  Similarity=0.507  Sum_probs=26.6

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        18 ~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .+++|+++|..||+|+.||++|+|+..+..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~  177 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML  177 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcch
Confidence            789999999999999999999999954433

>KOG2106|consensus

Probab=96.87  E-value=0.0034  Score=49.14  Aligned_cols=38  Identities=13%  Similarity=0.358  Sum_probs=33.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      +.++++++|+|+|.+||.|+.|+.|.|+.+..+.....
T Consensus       447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~  484 (626)
T KOG2106|consen  447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS  484 (626)
T ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE
Confidence            78999999999999999999999999999876654443

>KOG1523|consensus

Probab=96.86  E-value=0.0023  Score=47.60  Aligned_cols=64  Identities=13%  Similarity=0.136  Sum_probs=50.0

Q ss_pred             EeeeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCC--eEEEEEecccccccccCCCC
Q psy11104          4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKL-DTVS--LTIMIILFQERNLQDKLPPL   67 (70)
Q Consensus         4 ~~~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi-~~~~--~~~~~~~~~~~~~~~~~~~~   67 (70)
                      |...|....|...|++|+|+|.++.|++|+.|..-++|.. ..++  .++.+...+-++++.+--|.
T Consensus        45 w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~  111 (361)
T KOG1523|consen   45 WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPK  111 (361)
T ss_pred             ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCc
Confidence            5666777789999999999999999999999999999998 4444  44555555556666665554

>KOG0270|consensus

Probab=96.81  E-value=0.0034  Score=48.01  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q psy11104         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        12 ~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~   45 (70)
                      -|++.|.+++|+|. ++.|.+||.||+|++.|.+.
T Consensus       284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             hcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            48899999999998 88999999999999999983

>KOG0641|consensus

Probab=96.81  E-value=0.0023  Score=46.47  Aligned_cols=36  Identities=14%  Similarity=0.326  Sum_probs=33.7

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      .||...|+||.|||...++.+|+.|.+||+-|++.+
T Consensus       270 ~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  270 HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             CCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            489999999999999999999999999999998764

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=96.78  E-value=0.0054  Score=47.91  Aligned_cols=42  Identities=19%  Similarity=0.295  Sum_probs=35.9

Q ss_pred             eeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus         7 ~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      .-++.+..+.|.|.++||+.+.++.|++||+|.+||...+..
T Consensus       252 svtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t  293 (545)
T PF11768_consen  252 SVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT  293 (545)
T ss_pred             EEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee
Confidence            334557889999999999999999999999999999876643

>KOG1273|consensus

Probab=96.78  E-value=0.0012  Score=49.28  Aligned_cols=32  Identities=22%  Similarity=0.526  Sum_probs=29.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104         17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        17 V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      -+|+.||+.|.+||.|..||.|-|||..+...
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i   57 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI   57 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch
Confidence            68999999999999999999999999988763

>KOG1188|consensus

Probab=96.77  E-value=0.0018  Score=48.42  Aligned_cols=44  Identities=9%  Similarity=0.077  Sum_probs=35.0

Q ss_pred             CCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQN--QGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~spd--g~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      .+...++.+.|..+  +..+.||+.||+||+||+++..+..++.-.
T Consensus        68 ~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   68 GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence            46677888888763  567899999999999999998877765543

>KOG1063|consensus

Probab=96.77  E-value=0.0019  Score=51.66  Aligned_cols=37  Identities=11%  Similarity=0.135  Sum_probs=33.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ..|+-.|+.++|||||++|++.|.|.++.+|..+.+.
T Consensus       569 ~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~  605 (764)
T KOG1063|consen  569 EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDI  605 (764)
T ss_pred             cccceEEEEEEECCCCcEEEEeecCceEEeeeeeccc
Confidence            4688899999999999999999999999999875443

>KOG1240|consensus

Probab=96.76  E-value=0.0015  Score=54.97  Aligned_cols=33  Identities=30%  Similarity=0.394  Sum_probs=28.7

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q psy11104         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus        12 ~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~   44 (70)
                      .|.+.|+.++-++. +.+++|||+||+||+||.+
T Consensus      1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~ 1079 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLR 1079 (1431)
T ss_pred             hccccccceeecCCCCceEEEecCCceEEEeeeh
Confidence            46778888888877 6999999999999999964

>KOG0290|consensus

Probab=96.72  E-value=0.0055  Score=45.43  Aligned_cols=42  Identities=19%  Similarity=0.329  Sum_probs=35.1

Q ss_pred             eeecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeE
Q psy11104          8 KIAIPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg-~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      +=-.+|...|..|+|...+ +.+||.|.||++|++|++.-+-.
T Consensus       190 TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS  232 (364)
T KOG0290|consen  190 TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS  232 (364)
T ss_pred             eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence            3345899999999999874 68999999999999999876533

>KOG1036|consensus

Probab=96.71  E-value=0.0027  Score=46.69  Aligned_cols=34  Identities=15%  Similarity=0.358  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      .|...|.||++++--..+++||.|++||+||.+.
T Consensus        92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             cCCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence            5888999999999888899999999999999874

>KOG0299|consensus

Probab=96.70  E-value=0.0055  Score=47.08  Aligned_cols=46  Identities=20%  Similarity=0.297  Sum_probs=37.8

Q ss_pred             eeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104          6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus         6 ~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      ++-|..++.+.+.|++|= |..+++|||+||.|.||++...+..++.
T Consensus       319 sqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  319 SQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             ceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEe
Confidence            345777889999999995 5689999999999999998877655543

>KOG2111|consensus

Probab=96.67  E-value=0.0035  Score=46.49  Aligned_cols=34  Identities=29%  Similarity=0.737  Sum_probs=30.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ...|.|++||||+.+||..|+.|++.|+.++...
T Consensus       226 ~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  226 RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             hheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            4579999999999999999999999999987644

>KOG0646|consensus

Probab=96.66  E-value=0.0023  Score=49.05  Aligned_cols=32  Identities=25%  Similarity=0.512  Sum_probs=30.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKL   43 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi   43 (70)
                      +|=+.|+|+.|+-||.+|+|||.||.|.+|.+
T Consensus       121 aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l  152 (476)
T KOG0646|consen  121 AHYQSITCLKFSDDGSHIITGSKDGAVLVWLL  152 (476)
T ss_pred             hhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence            68889999999999999999999999999975

>KOG4328|consensus

Probab=96.61  E-value=0.0039  Score=48.00  Aligned_cols=44  Identities=16%  Similarity=0.211  Sum_probs=35.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---CCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD---TVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~---~~~~~~~~~~~   55 (70)
                      +|+..|++..|||.+..|+|-+.|..|||||..   ...+....+.+
T Consensus       367 ~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~H  413 (498)
T KOG4328|consen  367 PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPH  413 (498)
T ss_pred             cccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeec
Confidence            789999999999997779999999999999974   44444444444

>KOG0639|consensus

Probab=96.54  E-value=0.0022  Score=50.33  Aligned_cols=38  Identities=13%  Similarity=0.211  Sum_probs=35.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      +|.+.+.||+.++||..|=|||-|++||-||++++++.
T Consensus       549 GhtDGascIdis~dGtklWTGGlDntvRcWDlregrql  586 (705)
T KOG0639|consen  549 GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL  586 (705)
T ss_pred             CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence            78999999999999999999999999999999988754

>KOG1963|consensus

Probab=96.53  E-value=0.0037  Score=50.52  Aligned_cols=42  Identities=24%  Similarity=0.490  Sum_probs=36.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      |...|++++|++||.+|.|||..|-.-+|..++++...-.+.
T Consensus       250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRL  291 (792)
T KOG1963|consen  250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRL  291 (792)
T ss_pred             cccccceeEEecCCceEeecccceEEEEEeecCCCccccccc
Confidence            778999999999999999999999999999998886554443

>KOG0288|consensus

Probab=96.45  E-value=0.0025  Score=48.60  Aligned_cols=51  Identities=10%  Similarity=0.233  Sum_probs=41.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccccccccc
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDK   63 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~   63 (70)
                      ..+.|+.++|.+++.++++.+.|+.+++|++.+.+..-++..+++..++.+
T Consensus       218 s~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak  268 (459)
T KOG0288|consen  218 SLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAK  268 (459)
T ss_pred             cCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeeh
Confidence            356799999999999999999999999999999887777776655544444

>KOG0642|consensus

Probab=96.43  E-value=0.0041  Score=48.69  Aligned_cols=45  Identities=13%  Similarity=0.082  Sum_probs=37.3

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      .+..+|.+.|+.+++|+....|++|+.||++|+|+...... |++.
T Consensus       390 ~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~  434 (577)
T KOG0642|consen  390 GTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFG  434 (577)
T ss_pred             cceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccC
Confidence            44558999999999999988999999999999999766554 4433

>KOG0321|consensus

Probab=96.39  E-value=0.0044  Score=49.34  Aligned_cols=39  Identities=15%  Similarity=0.235  Sum_probs=30.5

Q ss_pred             CCCCCeEE---EEEcCCCCEEEEEeC-CCcEEEEECCCCCeEE
Q psy11104         12 PNNTKVNC---LAWHQNQGWIAVGGD-DGLLKVLKLDTVSLTI   50 (70)
Q Consensus        12 ~~~~~V~~---va~spdg~~LasGg~-Dg~IklWdi~~~~~~~   50 (70)
                      +++..|.+   +-+..|..+|||+|. |+.||+||++......
T Consensus       212 A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  212 AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             cccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence            45555655   666789999999988 9999999998776544

>KOG0321|consensus

Probab=96.36  E-value=0.0025  Score=50.68  Aligned_cols=39  Identities=13%  Similarity=0.239  Sum_probs=33.8

Q ss_pred             eecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC
Q psy11104          9 IAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus         9 I~~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ..++|.+.|.++||+|. ...+++||.||.|.|||++-..
T Consensus       139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~  178 (720)
T KOG0321|consen  139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG  178 (720)
T ss_pred             eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence            45689999999999997 6679999999999999986543

>KOG2055|consensus

Probab=96.29  E-value=0.0079  Score=46.47  Aligned_cols=39  Identities=23%  Similarity=0.460  Sum_probs=33.8

Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus         9 I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      +..+..+.|+||.|||..++|.+||.||+++|+.++...
T Consensus       208 a~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~  246 (514)
T KOG2055|consen  208 AAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV  246 (514)
T ss_pred             cCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCcc
Confidence            334567889999999999999999999999999987655

>KOG1408|consensus

Probab=96.29  E-value=0.0076  Score=49.13  Aligned_cols=56  Identities=9%  Similarity=-0.033  Sum_probs=50.3

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      ..|.+..--|...|.|.|||+...|+++.++|..+++++.++..+.|..+-.+|.|
T Consensus       638 ~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n  693 (1080)
T KOG1408|consen  638 RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN  693 (1080)
T ss_pred             ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc
Confidence            35667888999999999999999999999999999999999999999877777654

>KOG0300|consensus

Probab=96.27  E-value=0.0025  Score=47.94  Aligned_cols=32  Identities=16%  Similarity=0.247  Sum_probs=30.5

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLK   42 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWd   42 (70)
                      .+|.+.|+||.|++.+.+++++|.|++..||.
T Consensus       187 ~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  187 TGHTGSVNSIKFHNSGLLLLTASGDETAHIWK  218 (481)
T ss_pred             cccccceeeEEeccccceEEEccCCcchHHHH
Confidence            37999999999999999999999999999997

>KOG0644|consensus

Probab=96.26  E-value=0.003  Score=51.89  Aligned_cols=43  Identities=21%  Similarity=0.348  Sum_probs=37.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .|...|+|+.|...|.+|++|++|..+|||...+..+-.+...
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG  230 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG  230 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC
Confidence            6888999999999999999999999999999777766555444

>KOG0301|consensus

Probab=96.22  E-value=0.0075  Score=48.31  Aligned_cols=45  Identities=22%  Similarity=0.162  Sum_probs=39.0

Q ss_pred             CeEEeeeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104          1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus         1 ~~~~~~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      |..|..+++..+|++.|..++..+ +..+++||.||++|+|+-...
T Consensus         1 ~~~Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~   45 (745)
T KOG0301|consen    1 MPQYKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGK   45 (745)
T ss_pred             CCcceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCc
Confidence            678999999999999999999875 458999999999999986443

>KOG0639|consensus

Probab=96.10  E-value=0.0042  Score=48.82  Aligned_cols=43  Identities=16%  Similarity=0.081  Sum_probs=34.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccc
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE   57 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~   57 (70)
                      ...++++.|||.+...+|..||.|+|||+.++..+=.+..+..
T Consensus       510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD  552 (705)
T KOG0639|consen  510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD  552 (705)
T ss_pred             hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence            3567899999999999999999999999998876555444433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=96.08  E-value=0.019  Score=42.18  Aligned_cols=37  Identities=16%  Similarity=0.140  Sum_probs=30.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTVSL   48 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~D---g~IklWdi~~~~~   48 (70)
                      .+...+.+.+|||||+.||..+.+   ..|++||+.++..
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~  240 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR  240 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce
Confidence            456679999999999999987654   3699999987753

>KOG1064|consensus

Probab=96.08  E-value=0.0081  Score=52.63  Aligned_cols=38  Identities=13%  Similarity=0.259  Sum_probs=34.5

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .+.|.+.++|+++-|..++|+|||.+|.|++||++..+
T Consensus      2332 ~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2332 HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred             eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence            37899999999999999999999999999999987544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.99  E-value=0.034  Score=30.03  Aligned_cols=31  Identities=13%  Similarity=0.324  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCC-C--CEEEEEeCCCcEEEEECCC
Q psy11104         15 TKVNCLAWHQN-Q--GWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        15 ~~V~~va~spd-g--~~LasGg~Dg~IklWdi~~   45 (70)
                      +.|+++.|||. +  .+||-.-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            46899999986 5  6999988899999999985

It contains a characteristic DLL sequence motif.

>KOG2106|consensus

Probab=95.96  E-value=0.013  Score=46.06  Aligned_cols=53  Identities=11%  Similarity=0.110  Sum_probs=38.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      ..|....+.++-+|+.+.++|+|.|+.++||+   +.+..=-....+-..+.+|-|
T Consensus       365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~---~~k~~wt~~~~d~~~~~~fhp  417 (626)
T KOG2106|consen  365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN---DHKLEWTKIIEDPAECADFHP  417 (626)
T ss_pred             EecccceeeEEcCCChhheeeccCcceEEEcc---CCceeEEEEecCceeEeeccC
Confidence            36888999999999999999999999999999   222222223333444555544

>KOG3881|consensus

Probab=95.85  E-value=0.013  Score=44.39  Aligned_cols=35  Identities=14%  Similarity=0.222  Sum_probs=31.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      -.+.|.+|..+|.+++||+||-|..+||+|+++.+
T Consensus       289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             ccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence            35789999999999999999999999999999844

>KOG1963|consensus

Probab=95.83  E-value=0.011  Score=47.98  Aligned_cols=36  Identities=25%  Similarity=0.599  Sum_probs=32.0

Q ss_pred             eeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11104          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLK   42 (70)
Q Consensus         7 ~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWd   42 (70)
                      +.|.+.|.-.++|+++||++.++|+|..||.|.+|.
T Consensus       198 ~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~  233 (792)
T KOG1963|consen  198 RDITVHHTFNITCVALSPNERYLAAGDSDGRILVWR  233 (792)
T ss_pred             chhhhhhcccceeEEeccccceEEEeccCCcEEEEe
Confidence            446667777799999999999999999999999996

>PRK05137 tolB translocation protein TolB; Provisional

Probab=95.81  E-value=0.049  Score=39.96  Aligned_cols=37  Identities=16%  Similarity=0.035  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGD---DGLLKVLKLDTVSL   48 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~---Dg~IklWdi~~~~~   48 (70)
                      .+...+.+.+|+|||+.||..+.   +..|.+||+.++..
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~  238 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR  238 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE
Confidence            45678999999999999988764   46899999987754

>KOG1409|consensus

Probab=95.77  E-value=0.03  Score=42.18  Aligned_cols=40  Identities=20%  Similarity=0.325  Sum_probs=35.5

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      ++|.+.+.|++|.|....|.||.+|.+|.+||+...+...
T Consensus       194 ~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~  233 (404)
T KOG1409|consen  194 NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA  233 (404)
T ss_pred             cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee
Confidence            4899999999999999999999999999999987665443

>KOG0307|consensus

Probab=95.70  E-value=0.0086  Score=49.70  Aligned_cols=44  Identities=11%  Similarity=0.141  Sum_probs=37.8

Q ss_pred             cCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         11 IPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        11 ~~~~~~V~~va~spdg-~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ..|...|.+++|++.. .+|+|+|.|+.|.+|+.++++..-.+-.
T Consensus       250 ~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  250 EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA  294 (1049)
T ss_pred             cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence            4688999999999974 8999999999999999999876665444

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=95.66  E-value=0.047  Score=39.73  Aligned_cols=36  Identities=8%  Similarity=0.119  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ...+.|..++.||||+.||+...+|.|.||++-+-+
T Consensus       227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence            346789999999999999999999999999986543

>KOG1587|consensus

Probab=95.51  E-value=0.038  Score=43.19  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=31.5

Q ss_pred             CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCe
Q psy11104         14 NTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        14 ~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      .+.|.|++|+|. ..++|.|..+|.|-+||++.+..
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~  277 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSD  277 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCC
Confidence            578999999997 88999999999999999987665

>KOG2079|consensus

Probab=95.44  E-value=0.032  Score=46.78  Aligned_cols=44  Identities=18%  Similarity=0.271  Sum_probs=36.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecc
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQ   56 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~   56 (70)
                      -.++|.+++||.||.+++.|-.+|.|.+||...++..-.+..++
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~  172 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG  172 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC
Confidence            35789999999999999999999999999998877544444443

>KOG0280|consensus

Probab=95.36  E-value=0.036  Score=41.04  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=31.8

Q ss_pred             CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         13 NNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        13 ~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      |...|.||.=||. +.+||+|+.|-.|++||.++=.+++
T Consensus       209 H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl  247 (339)
T KOG0280|consen  209 HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL  247 (339)
T ss_pred             eecceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence            5677999988876 8899999999999999988655444

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=95.19  E-value=0.086  Score=36.76  Aligned_cols=32  Identities=16%  Similarity=0.286  Sum_probs=27.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDT   45 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~-Dg~IklWdi~~   45 (70)
                      ....+.++|+|+|+++.++.+ +++|.+|+++.
T Consensus       174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             CCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            445678999999999888776 99999999974

>KOG4532|consensus

Probab=95.17  E-value=0.065  Score=39.56  Aligned_cols=36  Identities=17%  Similarity=0.179  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      +..+.-.+.+||.+...+|++..||++.|||++...
T Consensus       201 ~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  201 PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             ccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence            445556789999999999999999999999998765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=95.09  E-value=0.085  Score=38.80  Aligned_cols=37  Identities=16%  Similarity=0.114  Sum_probs=29.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTVSL   48 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~D---g~IklWdi~~~~~   48 (70)
                      .+...+.+.+|+|||+.||..+.+   ..|.+||+.+++.
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~  232 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR  232 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE
Confidence            456778999999999999887643   3599999988764

>KOG2315|consensus

Probab=95.08  E-value=0.051  Score=42.66  Aligned_cols=46  Identities=9%  Similarity=0.152  Sum_probs=32.9

Q ss_pred             CeEEeeeeee---cCCCCCeEEEEEcCCCCEEEEEe------CCCcEEEEECCCC
Q psy11104          1 MFIYLSKKIA---IPNNTKVNCLAWHQNQGWIAVGG------DDGLLKVLKLDTV   46 (70)
Q Consensus         1 ~~~~~~~~I~---~~~~~~V~~va~spdg~~LasGg------~Dg~IklWdi~~~   46 (70)
                      |=+|.+.+.+   +.....-.-.+|+|||+++.|+.      .|+.+|||++...
T Consensus       338 mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  338 MEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             eEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            4467665533   33444456689999999998885      5789999997654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=95.06  E-value=0.064  Score=39.04  Aligned_cols=32  Identities=22%  Similarity=0.362  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      ..=+-++||||+.+||.+...|+|+++|+...
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~   75 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS   75 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEecccc
Confidence            34578999999999999999999999998753

>KOG2048|consensus

Probab=94.97  E-value=0.12  Score=41.38  Aligned_cols=55  Identities=16%  Similarity=0.201  Sum_probs=41.0

Q ss_pred             CeEEeeeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecc
Q psy11104          1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQ   56 (70)
Q Consensus         1 ~~~~~~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~   56 (70)
                      |-+++.+-+... .+.|.|+||+...+.||.|=.||.|.||+++.+=....+.-++
T Consensus        13 m~vhrcrf~d~~-Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~   67 (691)
T KOG2048|consen   13 MQVHRCRFVDYK-PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGP   67 (691)
T ss_pred             eEEEEEEEEeee-ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecC
Confidence            334455444442 4679999999999999999999999999998866555554443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=94.96  E-value=0.052  Score=42.54  Aligned_cols=38  Identities=18%  Similarity=0.507  Sum_probs=31.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      ....++|||+|..++.|++-|.+.+||..-....+.+.
T Consensus       301 ~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLl  338 (545)
T PF11768_consen  301 IPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLL  338 (545)
T ss_pred             cceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeec
Confidence            46789999999999999999999999987765544443

>KOG4714|consensus

Probab=94.93  E-value=0.03  Score=41.06  Aligned_cols=40  Identities=18%  Similarity=0.220  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        12 ~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      .|...++-|-|||. ++.|.++++||.+.-||-.+.-..+.
T Consensus       221 ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~  261 (319)
T KOG4714|consen  221 AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSIS  261 (319)
T ss_pred             HhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEec
Confidence            58899999999996 89999999999999999776444443

>KOG1310|consensus

Probab=94.88  E-value=0.048  Score=43.45  Aligned_cols=39  Identities=18%  Similarity=0.349  Sum_probs=34.5

Q ss_pred             eeecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCC
Q psy11104          8 KIAIPNNTKVNCLAWHQN--QGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spd--g~~LasGg~Dg~IklWdi~~~   46 (70)
                      .|..+|.+.|.|+.|-|.  .++++||+.|..|+++|+.+.
T Consensus        87 sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~  127 (758)
T KOG1310|consen   87 SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS  127 (758)
T ss_pred             eeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence            467789999999999996  678999999999999999863

>KOG1007|consensus

Probab=94.85  E-value=0.052  Score=40.37  Aligned_cols=42  Identities=17%  Similarity=0.261  Sum_probs=35.6

Q ss_pred             EEeeeeeec------CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q psy11104          3 IYLSKKIAI------PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus         3 ~~~~~~I~~------~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~   44 (70)
                      +|.-++.+.      +|...|++|.|||. .++|.|||.|..|.+|...
T Consensus       241 iWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  241 IWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             EEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            566666665      48899999999998 8899999999999999854

>KOG2321|consensus

Probab=94.83  E-value=0.038  Score=43.96  Aligned_cols=41  Identities=17%  Similarity=0.298  Sum_probs=35.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .+.+++|+.|+-..+||+|++||.|..||.++...+-.+.+
T Consensus       175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~  215 (703)
T KOG2321|consen  175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA  215 (703)
T ss_pred             cccceeeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence            47899999999999999999999999999887766555554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=94.73  E-value=0.22  Score=36.58  Aligned_cols=38  Identities=21%  Similarity=0.299  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        18 ~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      ..+.|+|||+++...+.||.|.++|+.+.+..-++..+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G   77 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG   77 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC
Confidence            45789999999988999999999999999866666554

...

>KOG2110|consensus

Probab=94.66  E-value=0.064  Score=40.50  Aligned_cols=32  Identities=19%  Similarity=0.465  Sum_probs=28.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .|.+++|+|++++|++.|+-++|.++.++...
T Consensus       220 ~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  220 SIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            58899999999999999999999999986543

>KOG2139|consensus

Probab=94.62  E-value=0.073  Score=40.52  Aligned_cols=34  Identities=12%  Similarity=0.314  Sum_probs=29.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCC
Q psy11104         14 NTKVNCLAWHQNQGWIAVGG-DDGLLKVLKLDTVS   47 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg-~Dg~IklWdi~~~~   47 (70)
                      +-+|.++.|++||..+++++ .|..|.|||.+++.
T Consensus       195 h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~  229 (445)
T KOG2139|consen  195 HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ  229 (445)
T ss_pred             CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence            46899999999999999987 45699999988775

>KOG4378|consensus

Probab=94.62  E-value=0.046  Score=43.12  Aligned_cols=45  Identities=7%  Similarity=0.149  Sum_probs=37.4

Q ss_pred             ecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         10 AIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        10 ~~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ...|..+...|+|+|. ..+|+|-|.|+.|.++|+.+....-++.+
T Consensus       204 ~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y  249 (673)
T KOG4378|consen  204 SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY  249 (673)
T ss_pred             hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee
Confidence            3478999999999998 56799999999999999988775555544

>KOG4378|consensus

Probab=94.49  E-value=0.083  Score=41.72  Aligned_cols=52  Identities=8%  Similarity=0.190  Sum_probs=40.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe-cccccccccC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL-FQERNLQDKL   64 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~-~~~~~~~~~~   64 (70)
                      ...+..+|+|+++|.+|+.|...|.|..+|++..+.++.++- |.....+..|
T Consensus       249 y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf  301 (673)
T KOG4378|consen  249 YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF  301 (673)
T ss_pred             ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence            346788999999999999999999999999998887665544 4333444444

>KOG4227|consensus

Probab=94.28  E-value=0.1  Score=40.47  Aligned_cols=39  Identities=13%  Similarity=0.225  Sum_probs=34.7

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      ..+|.+.|.|++|+.-...+.||+.+|+|.+.|+.+...
T Consensus       101 ~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qs  139 (609)
T KOG4227|consen  101 EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQS  139 (609)
T ss_pred             cCccccceEEEEEccCCeeEecCCCcceeEeeeccccee
Confidence            347889999999999899999999999999999987653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=94.27  E-value=0.093  Score=38.58  Aligned_cols=36  Identities=22%  Similarity=0.133  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECC--CCCeEEEE
Q psy11104         17 VNCLAWHQNQGWIAVGGDDGLLKVLKLD--TVSLTIMI   52 (70)
Q Consensus        17 V~~va~spdg~~LasGg~Dg~IklWdi~--~~~~~~~~   52 (70)
                      ..+++|+|||++|+.++.||.+++|++.  +++...++
T Consensus       374 ~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l  411 (429)
T PRK01742        374 DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL  411 (429)
T ss_pred             CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence            4567899999999999999999988863  34444333

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=94.21  E-value=0.14  Score=36.47  Aligned_cols=36  Identities=17%  Similarity=0.097  Sum_probs=28.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCe
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTVSL   48 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~D---g~IklWdi~~~~~   48 (70)
                      ++..+.+.+|+|||++||.++.+   ..|++||+.++..
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~  226 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR  226 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            44568889999999999987654   4799999988754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.89  E-value=0.32  Score=36.70  Aligned_cols=39  Identities=18%  Similarity=0.201  Sum_probs=28.7

Q ss_pred             CCCeEEEEEcC----CCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         14 NTKVNCLAWHQ----NQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        14 ~~~V~~va~sp----dg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      .+.+.+++.++    +..+|++-+.|+++|+||+.++.+....
T Consensus       214 ~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  214 SSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ---EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CCccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            34566777777    6789999999999999999999985443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1587|consensus

Probab=93.82  E-value=0.063  Score=42.00  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=29.4

Q ss_pred             CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC
Q psy11104         13 NNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        13 ~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~   47 (70)
                      +...|.+++|||- ...+|++..||.|.+||+....
T Consensus       440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence            4456999999998 6789999999999999985443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=93.54  E-value=0.15  Score=37.41  Aligned_cols=36  Identities=17%  Similarity=0.124  Sum_probs=28.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCe
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTVSL   48 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~D---g~IklWdi~~~~~   48 (70)
                      +...+.+.+|+|||+.||..+.+   ..|.+||+.++..
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~  240 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR  240 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE
Confidence            45578899999999999988744   3699999987754

>KOG1334|consensus

Probab=93.52  E-value=0.041  Score=42.95  Aligned_cols=50  Identities=28%  Similarity=0.287  Sum_probs=39.7

Q ss_pred             CeEEeeeeeec-----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104          1 MFIYLSKKIAI-----PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus         1 ~~~~~~~~I~~-----~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      .|+|..+.=+.     +.+.-|+|+.=||.-..|||+|-|.-||||...+.+...
T Consensus       418 IFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~  472 (559)
T KOG1334|consen  418 IFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERAT  472 (559)
T ss_pred             EEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcccccc
Confidence            47888875443     445589999999999999999999999999976555433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=93.49  E-value=0.18  Score=35.14  Aligned_cols=31  Identities=10%  Similarity=0.235  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q psy11104         16 KVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTV   46 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~-Dg~IklWdi~~~   46 (70)
                      ....++|+|||++|++++. +++|.+|+++..
T Consensus       275 ~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~  306 (330)
T PRK11028        275 QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE  306 (330)
T ss_pred             cCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence            4568899999999887665 899999987543

>KOG0280|consensus

Probab=93.47  E-value=0.16  Score=37.72  Aligned_cols=36  Identities=17%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC
Q psy11104         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        12 ~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~   47 (70)
                      +|.-+++..+|+.. .+++-+||+||.+.-||++..+
T Consensus       163 ~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~  199 (339)
T KOG0280|consen  163 VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK  199 (339)
T ss_pred             ccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence            67788899999876 6789999999999999999443

>KOG2919|consensus

Probab=93.38  E-value=0.07  Score=40.18  Aligned_cols=40  Identities=13%  Similarity=0.173  Sum_probs=33.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCeEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTVSLTI   50 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~-Dg~IklWdi~~~~~~~   50 (70)
                      .+|.+.|+.+.|.++|+.|.+|+. |-.|-.||++..+.++
T Consensus       247 ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv  287 (406)
T KOG2919|consen  247 GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV  287 (406)
T ss_pred             cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence            368899999999999999999875 6699999998766544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=93.02  E-value=0.38  Score=34.93  Aligned_cols=37  Identities=19%  Similarity=0.131  Sum_probs=28.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTVSL   48 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~D---g~IklWdi~~~~~   48 (70)
                      .+...+...+|||||+.||..+.+   ..|.+||+++++.
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~  235 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR  235 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE
Confidence            345678899999999999876644   3688899987753

>KOG0974|consensus

Probab=92.58  E-value=0.2  Score=41.65  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=30.4

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      +.|...|+.+.|+|+  .|+|+|+|.+.|+|+.....
T Consensus       215 fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~  249 (967)
T KOG0974|consen  215 FGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ  249 (967)
T ss_pred             ccccceeEEEEeccc--eeEEeccceEEEEEecccce
Confidence            469999999999998  99999999999999654433

>KOG1539|consensus

Probab=92.56  E-value=0.36  Score=39.81  Aligned_cols=43  Identities=16%  Similarity=0.274  Sum_probs=34.7

Q ss_pred             cCC-CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         11 IPN-NTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        11 ~~~-~~~V~~va~spdg~-~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      +.| .++|.+++|.-||+ ++|+|+..|.+-+||++..+..-.+.
T Consensus       240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~  284 (910)
T KOG1539|consen  240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR  284 (910)
T ss_pred             EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee
Confidence            345 48999999999975 58999999999999998877555444

>KOG4497|consensus

Probab=92.45  E-value=0.09  Score=39.82  Aligned_cols=28  Identities=29%  Similarity=0.604  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLK   42 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWd   42 (70)
                      -.+..++|+|.+++||.|+.|+.+|+-+
T Consensus       211 lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  211 LGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             cceeEEEeccccceEEeeccchhhhhhc
Confidence            4588999999999999999999999865

>KOG0644|consensus

Probab=92.41  E-value=0.03  Score=46.30  Aligned_cols=54  Identities=17%  Similarity=0.190  Sum_probs=40.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccc-cccccCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQER-NLQDKLPP   66 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~-~~~~~~~~   66 (70)
                      +|.+.|..++-+.+..++|++|.|.-||+|.+..+... .+..+++. .+.-+|-|
T Consensus       230 Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv-svLrghtgavtaiafsP  284 (1113)
T KOG0644|consen  230 GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV-SVLRGHTGAVTAIAFSP  284 (1113)
T ss_pred             CCccccchhccchhhhhhhhcccCceEEEEecCCCchH-HHHhccccceeeeccCc
Confidence            68899999999999999999999999999998877533 33334442 33334444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=92.09  E-value=0.42  Score=35.10  Aligned_cols=35  Identities=6%  Similarity=-0.015  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCC
Q psy11104         13 NNTKVNCLAWHQNQGWIA-VGGDDGL--LKVLKLDTVS   47 (70)
Q Consensus        13 ~~~~V~~va~spdg~~La-sGg~Dg~--IklWdi~~~~   47 (70)
                      +.+.+.+.+|||||+.|+ +.+.||.  |.+||++++.
T Consensus       244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~  281 (435)
T PRK05137        244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT  281 (435)
T ss_pred             CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc
Confidence            345677889999998765 5666765  6666877664

>KOG4547|consensus

Probab=92.06  E-value=0.54  Score=37.00  Aligned_cols=43  Identities=16%  Similarity=0.183  Sum_probs=35.8

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      +..+..+.+++.+|||..++++|  +.|++||+++.+....+..+
T Consensus       141 ~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh  183 (541)
T KOG4547|consen  141 KEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGH  183 (541)
T ss_pred             ccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCC
Confidence            34566788999999999999885  68999999999887776654

>KOG1517|consensus

Probab=91.74  E-value=0.3  Score=41.51  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             eecCCCCC--eEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q psy11104          9 IAIPNNTK--VNCLAWHQNQG-WIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus         9 I~~~~~~~--V~~va~spdg~-~LasGg~Dg~IklWdi~~   45 (70)
                      +.++|+..  |..+.+.++|- .|+||+.||.|++||++.
T Consensus      1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             eecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence            34567776  99999999865 499999999999999988

>KOG2695|consensus

Probab=91.59  E-value=0.22  Score=37.84  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=30.1

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCe
Q psy11104         12 PNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        12 ~~~~~V~~va~sp-dg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      -|.+.|.|+..-. +++.|.+.+.+|+|++||++.-++
T Consensus       296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~  333 (425)
T KOG2695|consen  296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC  333 (425)
T ss_pred             EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc
Confidence            4677888887766 678888889999999999987665

>KOG3914|consensus

Probab=91.42  E-value=0.23  Score=37.64  Aligned_cols=35  Identities=11%  Similarity=0.142  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      +|-+-+..|+|+||+++|+++..|..||+-.+...
T Consensus       149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~  183 (390)
T KOG3914|consen  149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT  183 (390)
T ss_pred             hhhhhhheeeecCCCCEEEEecCCceEEEEecCcc
Confidence            46778999999999999999999999999876543

>KOG2314|consensus

Probab=91.38  E-value=0.37  Score=38.51  Aligned_cols=42  Identities=12%  Similarity=0.145  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCCeEEEEEe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGG-----------DDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg-----------~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .|. .|.-++|||+.+||+|=|           +...++|||+++|...-++..
T Consensus       248 ~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~  300 (698)
T KOG2314|consen  248 YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPV  300 (698)
T ss_pred             cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceec
Confidence            344 489999999999999964           235899999999986655544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=91.32  E-value=0.86  Score=33.68  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=27.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGG---DDGLLKVLKLDTVS   47 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg---~Dg~IklWdi~~~~   47 (70)
                      +...+.+.+|||||+.||..+   .+..|.+|++.+++
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~  234 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA  234 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC
Confidence            345788999999999988654   34579999998765

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=91.21  E-value=1.1  Score=33.37  Aligned_cols=37  Identities=24%  Similarity=0.156  Sum_probs=30.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      .+++..++.||+|++||.-.++|.+.+.+.+-.+.-+
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~  252 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLC  252 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeE
Confidence            4679999999999999999999999988765554433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.15  E-value=0.98  Score=22.31  Aligned_cols=28  Identities=14%  Similarity=0.328  Sum_probs=18.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CC--CcEEEE
Q psy11104         14 NTKVNCLAWHQNQGWIAVGG-DD--GLLKVL   41 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg-~D--g~IklW   41 (70)
                      ...-.+.+|||||+.|+-.+ .+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            44667889999998877654 34  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2066|consensus

Probab=91.14  E-value=0.54  Score=38.62  Aligned_cols=41  Identities=20%  Similarity=0.122  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEEcCC-------------CCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         12 PNNTKVNCLAWHQN-------------QGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        12 ~~~~~V~~va~spd-------------g~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      +|++.|.-..+.-+             |+++||||+||+|-|-.+-++++....
T Consensus        56 tH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   56 THRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             cccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            56666665555444             999999999999999988877766543

>KOG0650|consensus

Probab=91.09  E-value=0.33  Score=39.04  Aligned_cols=60  Identities=15%  Similarity=0.163  Sum_probs=45.6

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCeEEEEEecccccccccCCCC
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTVSLTIMIILFQERNLQDKLPPL   67 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~D---g~IklWdi~~~~~~~~~~~~~~~~~~~~~~~~   67 (70)
                      .|...|...|+.|.||..|.|||+..-|   ..|-|.++......+.+.+-+.....++|-|-
T Consensus       515 ~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs  577 (733)
T KOG0650|consen  515 CIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPS  577 (733)
T ss_pred             EEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCC
Confidence            3666788999999999999999997544   47889998777766666555556666666664

>KOG3881|consensus

Probab=91.05  E-value=0.62  Score=35.52  Aligned_cols=56  Identities=9%  Similarity=0.020  Sum_probs=45.7

Q ss_pred             EEeeeeeecCCCC-----CeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCeEEEEEecccc
Q psy11104          3 IYLSKKIAIPNNT-----KVNCLAWHQN--QGWIAVGGDDGLLKVLKLDTVSLTIMIILFQER   58 (70)
Q Consensus         3 ~~~~~~I~~~~~~-----~V~~va~spd--g~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~   58 (70)
                      +|.+|++.+..-+     .+.++.|-|.  ...+|++..-+.+|+||.+.++.++.-..+.|.
T Consensus       186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~  248 (412)
T KOG3881|consen  186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN  248 (412)
T ss_pred             eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC
Confidence            6888888875432     4568888877  789999999999999999999988887777664

>KOG1645|consensus

Probab=91.04  E-value=0.17  Score=38.84  Aligned_cols=46  Identities=13%  Similarity=0.197  Sum_probs=38.0

Q ss_pred             ecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         10 AIPNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~-~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      -..|+..|..++|||..+ ++..++.+.+|+|.|+++...+.+..+.
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~  235 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY  235 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc
Confidence            335678899999999966 8899999999999999988776665554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=90.91  E-value=0.76  Score=33.76  Aligned_cols=34  Identities=21%  Similarity=0.116  Sum_probs=25.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCeE
Q psy11104         16 KVNCLAWHQNQGWIAVGGDDG---LLKVLKLDTVSLT   49 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~Dg---~IklWdi~~~~~~   49 (70)
                      .....+|||||++|+..+.++   .|.+||+.++...
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence            344689999999988765433   6999999877644

>KOG4714|consensus

Probab=90.71  E-value=0.09  Score=38.59  Aligned_cols=39  Identities=23%  Similarity=0.455  Sum_probs=31.5

Q ss_pred             CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         16 KVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        16 ~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .|.+++=+|. ..++++|++||.+-+||.+...-+.++..
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~  220 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK  220 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH
Confidence            4999999998 56788899999999999988765544443

>KOG2321|consensus

Probab=90.64  E-value=0.69  Score=37.12  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=32.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      ..|++++|+-||-.+|.|..+|.|.|+|+++.+..+.
T Consensus       229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~  265 (703)
T KOG2321|consen  229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV  265 (703)
T ss_pred             CcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence            4599999998899999999999999999988765443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=90.54  E-value=0.88  Score=32.42  Aligned_cols=35  Identities=20%  Similarity=0.257  Sum_probs=28.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCe
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDG---LLKVLKLDTVSL   48 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg---~IklWdi~~~~~   48 (70)
                      ...+...+|+|+|++|+.++.++   .|.+||+.++..
T Consensus       321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence            44567889999999999888776   788889877544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=90.43  E-value=0.8  Score=34.06  Aligned_cols=36  Identities=22%  Similarity=0.163  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCeE
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTVSLT   49 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~D---g~IklWdi~~~~~~   49 (70)
                      ...+...+|||||+.||..+.+   ..|.+||+.+++..
T Consensus       326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~  364 (428)
T PRK01029        326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY  364 (428)
T ss_pred             CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence            3456788999999998876543   36899999877643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=90.37  E-value=0.73  Score=34.36  Aligned_cols=35  Identities=14%  Similarity=0.035  Sum_probs=26.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCCe
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGD-DG--LLKVLKLDTVSL   48 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~-Dg--~IklWdi~~~~~   48 (70)
                      ...+.+.+|||||+.||..+. ++  .|.+||+.+++.
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~  254 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR  254 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe
Confidence            446678999999999887654 33  588889887653

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=90.12  E-value=0.47  Score=35.96  Aligned_cols=57  Identities=12%  Similarity=0.213  Sum_probs=41.8

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec-cc-------ccccccCCCCc
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF-QE-------RNLQDKLPPLM   68 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~-~~-------~~~~~~~~~~~   68 (70)
                      +.|.--+++++|+.|.+.+.| ++|=.|.+|++.--.....+-.- +|       -.+++.|-|-|
T Consensus       169 NaH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~  233 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM  233 (460)
T ss_pred             ccceeEeeeeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH
Confidence            678889999999999999888 57889999998766655554442 11       25566666644

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.09  E-value=1.4  Score=35.50  Aligned_cols=36  Identities=14%  Similarity=0.337  Sum_probs=29.8

Q ss_pred             CCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCC
Q psy11104         12 PNNTKVNCLAWHQN---QGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        12 ~~~~~V~~va~spd---g~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ++...|..+.|||.   +.+|+.=..|+++|++|+....
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            34568999999997   4788888999999999987654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK02889 tolB translocation protein TolB; Provisional

Probab=89.96  E-value=0.99  Score=33.21  Aligned_cols=32  Identities=19%  Similarity=0.035  Sum_probs=25.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCe
Q psy11104         17 VNCLAWHQNQGWIAVGGDDG---LLKVLKLDTVSL   48 (70)
Q Consensus        17 V~~va~spdg~~LasGg~Dg---~IklWdi~~~~~   48 (70)
                      ....+|||||++||..+.++   .|.+||+.++..
T Consensus       330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence            34578999999998877655   699999987754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=89.44  E-value=1.8  Score=31.77  Aligned_cols=38  Identities=13%  Similarity=0.184  Sum_probs=26.7

Q ss_pred             CCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCeEEE
Q psy11104         14 NTKVNCLAWHQNQGWIAVG-GDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasG-g~Dg~IklWdi~~~~~~~~   51 (70)
                      .....++++||||++++.+ ..++.+.++|.++.+..-.
T Consensus        77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~  115 (369)
T PF02239_consen   77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKT  115 (369)
T ss_dssp             SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEE
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceee
Confidence            4456899999999987765 5799999999888764433

...

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.35  E-value=0.75  Score=31.63  Aligned_cols=30  Identities=20%  Similarity=0.205  Sum_probs=25.6

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104         22 WHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        22 ~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      +..++.+|.+-..+|.+++||+.+.+..+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~   47 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLP   47 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccC
Confidence            556789999999999999999999876654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK03629 tolB translocation protein TolB; Provisional

Probab=89.19  E-value=1.3  Score=32.80  Aligned_cols=30  Identities=13%  Similarity=0.178  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCc---EEEEECCCC
Q psy11104         17 VNCLAWHQNQGWIAVGGDDGL---LKVLKLDTV   46 (70)
Q Consensus        17 V~~va~spdg~~LasGg~Dg~---IklWdi~~~   46 (70)
                      ....+|+|||++|+..+.|+.   +.++++...
T Consensus       376 ~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~  408 (429)
T PRK03629        376 DETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR  408 (429)
T ss_pred             CCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            346789999999999998875   666776443

>KOG3621|consensus

Probab=89.01  E-value=0.64  Score=37.66  Aligned_cols=34  Identities=24%  Similarity=0.477  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      .|+..|+|++|++|+..+.+|..-|+|.+-.+.+
T Consensus       122 ~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  122 SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            4788999999999999999999999999888776

>PRK00178 tolB translocation protein TolB; Provisional

Probab=88.97  E-value=1.2  Score=32.42  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCCe
Q psy11104         15 TKVNCLAWHQNQGWIA-VGGDDG--LLKVLKLDTVSL   48 (70)
Q Consensus        15 ~~V~~va~spdg~~La-sGg~Dg--~IklWdi~~~~~   48 (70)
                      +.+.+.+|+|||+.|+ +.+.+|  .|.++|++++..
T Consensus       243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~  279 (430)
T PRK00178        243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL  279 (430)
T ss_pred             CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence            3455789999999877 455555  577889887653

>KOG1354|consensus

Probab=88.92  E-value=0.72  Score=35.12  Aligned_cols=44  Identities=14%  Similarity=0.218  Sum_probs=36.3

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .++|.--|++|++|.|++.+.| ++|=.|.+|+++-..+...+-.
T Consensus       160 aNaHtyhiNSIS~NsD~Et~lS-ADdLRINLWnlei~d~sFnIVD  203 (433)
T KOG1354|consen  160 ANAHTYHINSISVNSDKETFLS-ADDLRINLWNLEIIDQSFNIVD  203 (433)
T ss_pred             cccceeEeeeeeecCccceEee-ccceeeeeccccccCCceeEEE
Confidence            4578889999999999999998 5788999999877666666554

>KOG1240|consensus

Probab=88.91  E-value=1.7  Score=37.56  Aligned_cols=43  Identities=23%  Similarity=0.387  Sum_probs=35.9

Q ss_pred             EEeeeeeecC------------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104          3 IYLSKKIAIP------------NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus         3 ~~~~~~I~~~------------~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      +|..+++...            .++++.++..-++|..+|.|+.||.|++.+++-
T Consensus      1075 vW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1075 VWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred             EeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccc
Confidence            5666666554            567899999999999999999999999999865

>KOG4497|consensus

Probab=88.86  E-value=1.1  Score=34.21  Aligned_cols=36  Identities=14%  Similarity=0.202  Sum_probs=28.7

Q ss_pred             CCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCCeE
Q psy11104         14 NTKVNCLAWHQNQGW-IAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus        14 ~~~V~~va~spdg~~-LasGg~Dg~IklWdi~~~~~~   49 (70)
                      ...+.+++|||||+. |.+..-|-.|-+|.+.+.+..
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY  127 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence            456889999999955 666777889999998877543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=88.81  E-value=0.54  Score=35.65  Aligned_cols=38  Identities=16%  Similarity=0.228  Sum_probs=30.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      +.|..+.|+++|++|++- +--+++|||+...+.++-.+
T Consensus       281 sSISD~kFs~ngryIlsR-dyltvkiwDvnm~k~pikTi  318 (460)
T COG5170         281 SSISDFKFSDNGRYILSR-DYLTVKIWDVNMAKNPIKTI  318 (460)
T ss_pred             hhhcceEEcCCCcEEEEe-ccceEEEEecccccCCceee
Confidence            467889999999999974 35689999998887665443

>KOG3617|consensus

Probab=88.74  E-value=0.78  Score=38.71  Aligned_cols=37  Identities=11%  Similarity=0.307  Sum_probs=33.4

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~   44 (70)
                      ++..+|..+|..+.|||+|..+.|+..=|.+.+|.+.
T Consensus        95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            3555899999999999999999999999999999875

>KOG1538|consensus

Probab=87.52  E-value=1.2  Score=36.81  Aligned_cols=41  Identities=15%  Similarity=0.408  Sum_probs=32.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ....|.|.+|+-||+++|-|-.||+|.|=+ +++++.+.+..
T Consensus       131 ss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~R  171 (1081)
T KOG1538|consen  131 SSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIER  171 (1081)
T ss_pred             hheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeC
Confidence            356789999999999999999999999865 55555555554

>KOG2066|consensus

Probab=87.27  E-value=1.4  Score=36.31  Aligned_cols=38  Identities=26%  Similarity=0.397  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      .-.++|.+|.|  .|.+||=++++| |+++|+.++.....+
T Consensus       158 ~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i  195 (846)
T KOG2066|consen  158 EGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNI  195 (846)
T ss_pred             cCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeecc
Confidence            34689999999  589999998888 899998877655443

>KOG2695|consensus

Probab=86.58  E-value=0.83  Score=34.78  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=27.5

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccccccc
Q psy11104         23 HQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQ   61 (70)
Q Consensus        23 spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~   61 (70)
                      ++....++++|+|...|||.++++...+++ .|++-...
T Consensus       355 ~~eeg~I~s~GdDcytRiWsl~~ghLl~ti-pf~~s~~e  392 (425)
T KOG2695|consen  355 KEEEGSIFSVGDDCYTRIWSLDSGHLLCTI-PFPYSASE  392 (425)
T ss_pred             ccccceEEEccCeeEEEEEecccCceeecc-CCCCcccc
Confidence            344568888999999999999999876652 34443333

>KOG1409|consensus

Probab=86.18  E-value=0.76  Score=34.86  Aligned_cols=31  Identities=16%  Similarity=0.451  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      ..|.++.+.-.-.+|+|+|.|..|+|||+++
T Consensus       365 tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  365 TGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             cceeEEEhhhhccceeecCCceEEEEEechh
Confidence            3577888876777899999999999999764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=86.12  E-value=1.7  Score=27.65  Aligned_cols=27  Identities=30%  Similarity=0.364  Sum_probs=20.3

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCcEEEEEC
Q psy11104         17 VNCLAWHQ---NQ-GWIAVGGDDGLLKVLKL   43 (70)
Q Consensus        17 V~~va~sp---dg-~~LasGg~Dg~IklWdi   43 (70)
                      |+++++..   || ..|+.||+|..||+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~   32 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG   32 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC
Confidence            55666654   43 56999999999999973

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=86.05  E-value=1.7  Score=36.27  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=29.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      ....|+++++|+++++-+.++.|++||+++++.
T Consensus       860 ~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        860 EPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            567899999999999999999999999988764

>KOG0649|consensus

Probab=85.97  E-value=1.9  Score=31.69  Aligned_cols=40  Identities=15%  Similarity=0.218  Sum_probs=32.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ..|+++...|..+-|..+|.|+.++-||+++++..-.+..
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG  154 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG  154 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC
Confidence            3689999999877777777899999999999976555443

>KOG1354|consensus

Probab=85.92  E-value=1.2  Score=34.04  Aligned_cols=32  Identities=9%  Similarity=0.318  Sum_probs=28.3

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLK   42 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWd   42 (70)
                      .....-|.+|.|+..|++||+|..+|.|-++.
T Consensus        22 vteadiis~vef~~~Ge~LatGdkgGRVv~f~   53 (433)
T KOG1354|consen   22 VTEADIISAVEFDHYGERLATGDKGGRVVLFE   53 (433)
T ss_pred             echhcceeeEEeecccceEeecCCCCeEEEee
Confidence            34567789999999999999999999999986

>KOG4190|consensus

Probab=85.10  E-value=0.36  Score=39.01  Aligned_cols=34  Identities=15%  Similarity=0.224  Sum_probs=29.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      +|...|+.++--.|.+-++|++.|++||+|.++.
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~  766 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKP  766 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEecc
Confidence            6778888887767788899999999999999864

>KOG1517|consensus

Probab=85.08  E-value=2.1  Score=36.71  Aligned_cols=40  Identities=25%  Similarity=0.207  Sum_probs=30.2

Q ss_pred             eecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCe
Q psy11104          9 IAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus         9 I~~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      |.......|++++=+.. |+.||.|-.||.||++|.+....
T Consensus      1203 iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP 1243 (1387)
T ss_pred             cccCCCccceeecccccCCceEEEeecCCceEEeecccCCc
Confidence            33444566777766655 79999999999999999766543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=84.87  E-value=6.5  Score=29.19  Aligned_cols=39  Identities=10%  Similarity=0.109  Sum_probs=31.6

Q ss_pred             CCCeEEEEEcCCCC-EEEEEe-CCCcEEEEECCCCCeEEEE
Q psy11104         14 NTKVNCLAWHQNQG-WIAVGG-DDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        14 ~~~V~~va~spdg~-~LasGg-~Dg~IklWdi~~~~~~~~~   52 (70)
                      ...+..|+++|||+ +|.... .++.|.+.|..+.+..-++
T Consensus       298 G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       298 GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            45789999999998 766444 7889999999998876654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=84.56  E-value=2.1  Score=35.35  Aligned_cols=29  Identities=14%  Similarity=0.402  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLK   42 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWd   42 (70)
                      .+.|.|++||||+++||-...+|++-+-+
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            35799999999999999998899887764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=84.41  E-value=2.8  Score=31.25  Aligned_cols=32  Identities=16%  Similarity=0.184  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCEEEE-EeCCCc--EEEEECCCCC
Q psy11104         16 KVNCLAWHQNQGWIAV-GGDDGL--LKVLKLDTVS   47 (70)
Q Consensus        16 ~V~~va~spdg~~Las-Gg~Dg~--IklWdi~~~~   47 (70)
                      .....+|+|||+.||. .+.||.  |.++|+++++
T Consensus       263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~  297 (448)
T PRK04792        263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA  297 (448)
T ss_pred             CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence            3457899999998764 566775  6677877664

>KOG0309|consensus

Probab=82.31  E-value=1.5  Score=36.40  Aligned_cols=44  Identities=5%  Similarity=0.043  Sum_probs=38.9

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      +|+..|..+-|+|+ -..+|+++-|-.+..||.++...++-....
T Consensus       112 ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~  156 (1081)
T KOG0309|consen  112 GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS  156 (1081)
T ss_pred             cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec
Confidence            78899999999998 678999999999999999998877766553

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=81.74  E-value=3.5  Score=34.12  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      +....|..++||+|++.||.--+|. |.+|...+-.+-
T Consensus       302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWY  338 (928)
T PF04762_consen  302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWY  338 (928)
T ss_pred             CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEE
Confidence            3456899999999999999987666 999988777643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=81.45  E-value=4.8  Score=29.58  Aligned_cols=37  Identities=19%  Similarity=0.134  Sum_probs=29.8

Q ss_pred             CCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeEE
Q psy11104         14 NTKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        14 ~~~V~~va~spdg~~L-asGg~Dg~IklWdi~~~~~~~   50 (70)
                      ++.+-+|+++++|.++ +|+=..|.+-+||..++...-
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~  253 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG  253 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence            4679999999998766 566678899999988887443

>KOG1832|consensus

Probab=81.42  E-value=3  Score=35.59  Aligned_cols=40  Identities=20%  Similarity=0.431  Sum_probs=34.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      .|+..-+|++|+-..++|+.|+..|.|+++++.++...-.
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s 1138 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES 1138 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc
Confidence            5677889999999999999999999999999988764443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=81.42  E-value=5  Score=29.85  Aligned_cols=29  Identities=7%  Similarity=0.123  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q psy11104         15 TKVNCLAWHQNQGWIAVGG-DDGLLKVLKL   43 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg-~Dg~IklWdi   43 (70)
                      +.....+|+|||+.|+..+ .+|..+||.+
T Consensus       281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             CCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence            3446789999999888766 4676666653

>KOG2315|consensus

Probab=80.75  E-value=2.5  Score=33.55  Aligned_cols=40  Identities=15%  Similarity=0.129  Sum_probs=31.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCeEEEEEe
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~D---g~IklWdi~~~~~~~~~~~   54 (70)
                      ++=+++=|||.|++|+-+|-+   |.|.+||+.+.++...+.+
T Consensus       312 gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a  354 (566)
T KOG2315|consen  312 GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA  354 (566)
T ss_pred             CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc
Confidence            456899999999998888765   6899999988766555433

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=80.63  E-value=6.9  Score=27.90  Aligned_cols=36  Identities=22%  Similarity=0.340  Sum_probs=26.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC--CCCeE
Q psy11104         14 NTKVNCLAWHQNQGWIAVGG-DDGLLKVLKLD--TVSLT   49 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg-~Dg~IklWdi~--~~~~~   49 (70)
                      ....+.++++|+|++|+.+. .++.|.+++++  ++...
T Consensus       291 G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~  329 (345)
T PF10282_consen  291 GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT  329 (345)
T ss_dssp             SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence            34478999999999887765 66799999774  44433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0309|consensus

Probab=80.27  E-value=0.59  Score=38.71  Aligned_cols=36  Identities=17%  Similarity=0.258  Sum_probs=29.2

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC
Q psy11104         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        12 ~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .|-..|+.++|+.- -..+-+++.||+|+.||.....
T Consensus       199 ~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  199 GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             ccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence            37778999999876 5568889999999999986543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	70
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	5e-05
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	2e-04

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 38.3 bits (88), Expect = 5e-05
 Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 3/36 (8%)

Query: 12  PNNTKVNCLAWHQNQ---GWIAVGGDDGLLKVLKLD 44
            +   + C  W++        A     GLL +  L 
Sbjct: 481 AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 36.8 bits (84), Expect = 2e-04
 Identities = 7/37 (18%), Positives = 15/37 (40%)

Query: 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI 50
          ++K    A+   Q  +A+    G + +     V + I
Sbjct: 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.11
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.07
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.07
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.06
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.05
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.05
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.04
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.04
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.03
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.01
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.01
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.0
2pm7_B	297	Protein transport protein SEC13, protein transport	99.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.96
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.93
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	98.92
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.91
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.91
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.91
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.9
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.88
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.88
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.88
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.85
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.85
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.84
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.83
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.83
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.83
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.83
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.82
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.82
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.81
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.8
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.79
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.79
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.79
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.79
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.79
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.78
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.78
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.78
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.77
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.77
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.75
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.75
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.75
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.75
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.73
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.72
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.71
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.71
2pm7_B	297	Protein transport protein SEC13, protein transport	98.7
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.7
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.68
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.68
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.68
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.67
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	98.67
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.67
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.66
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.66
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.66
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.65
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.64
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	98.63
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	98.63
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.63
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.63
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.63
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.62
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.62
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.61
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.6
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.59
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.59
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.59
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.59
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.59
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.58
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.58
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.58
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.58
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.57
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.56
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.56
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.54
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.54
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.53
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.53
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.53
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.51
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.51
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.51
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.51
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.5
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.5
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.47
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	98.46
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.44
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.44
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.43
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.42
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.42
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.42
3jro_A	753	Fusion protein of protein transport protein SEC13	98.42
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	98.41
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	98.4
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	98.39
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.39
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.38
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	98.38
3jro_A	753	Fusion protein of protein transport protein SEC13	98.34
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.27
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.23
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	98.18
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.03
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.03
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.91
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.89
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	97.77
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.66
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.64
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.56
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.54
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.49
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.47
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.43
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.4
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	97.38
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.38
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.34
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.25
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.13
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.03
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	96.99
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	96.98
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	96.93
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	96.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	96.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	96.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	96.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	96.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.85
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	96.75
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.68
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	96.65
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	96.65
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.6
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	96.58
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	96.55
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.55
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	96.54
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.4
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	96.32
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.29
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.27
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.22
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	96.16
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	96.14
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	96.08
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	96.07
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	95.98
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	95.97
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	95.91
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	95.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	95.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	95.73
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	95.57
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	95.57
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	95.44
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	95.44
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	95.37
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	95.37
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	95.02
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	94.88
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	94.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	94.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	94.62
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	94.37
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	94.37
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	94.07
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	94.05
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	93.53
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	93.24
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.81
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	92.4
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	91.93
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	91.91
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.9
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	91.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	91.32
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	91.24
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	91.19
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	91.11
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	91.09
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	90.83
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	90.73
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	89.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	89.6
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	89.54
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	88.61
2qe8_A	343	Uncharacterized protein; structural genomics, join	88.53
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	88.05
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	87.81
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	87.8
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	87.71
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	87.05
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	86.63
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	86.28
2qe8_A	343	Uncharacterized protein; structural genomics, join	86.23
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	86.13
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	86.02
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	85.82
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	85.77
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	85.15
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	83.48
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	83.12
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	82.7
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	82.06
2p4o_A	306	Hypothetical protein; putative lactonase, structur	81.97
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	81.85
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	80.59

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.11  E-value=1.5e-10  Score=79.80  Aligned_cols=40  Identities=8%  Similarity=0.111  Sum_probs=35.5

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .+...|.+.|++|+|||||++|||||.|++|||||+....
T Consensus       306 ~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          306 IFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             EETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred             EecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            3456899999999999999999999999999999986543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.07  E-value=4.5e-10  Score=77.17  Aligned_cols=47  Identities=30%  Similarity=0.376  Sum_probs=41.2

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecc
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQ   56 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~   56 (70)
                      -.+|.+.|++++|+|++++|||||.||+|+|||+.++.....+..+.
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~  108 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC  108 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCC
Confidence            45799999999999999999999999999999999888766665443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.07  E-value=3.2e-10  Score=74.22  Aligned_cols=37  Identities=19%  Similarity=0.089  Sum_probs=33.8

Q ss_pred             cCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC
Q psy11104         11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        11 ~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .+|.+.|++|+|+|+ +++|||||.||+|||||+.+..
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~   72 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE   72 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            479999999999998 7899999999999999987654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.06  E-value=2.4e-10  Score=76.25  Aligned_cols=48  Identities=15%  Similarity=0.221  Sum_probs=40.5

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      +...+|.+.|.+++|+|++++||+|+.||+|++||++++.....+..+
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~   54 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVT   54 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeecc
Confidence            344578999999999999999999999999999999988765554433

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.05  E-value=2.2e-10  Score=74.40  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=33.2

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      .+|.+.|++++|+|||++|||||.||+|||||+.+.
T Consensus       281 ~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          281 KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            379999999999999999999999999999998653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.05  E-value=5.5e-10  Score=77.07  Aligned_cols=55  Identities=11%  Similarity=-0.016  Sum_probs=43.4

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKL   64 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~   64 (70)
                      ..+|.+.|++|+|+|+|++||||+.||+|++||+++++....+..+.....+..|
T Consensus       123 ~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~  177 (344)
T 4gqb_B          123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAA  177 (344)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEe
Confidence            3479999999999999999999999999999999988766555444333334344

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.04  E-value=1.1e-10  Score=80.96  Aligned_cols=56  Identities=18%  Similarity=0.163  Sum_probs=47.5

Q ss_pred             cCCCCCeEEEEEcC--------CCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         11 IPNNTKVNCLAWHQ--------NQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        11 ~~~~~~V~~va~sp--------dg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      .+|.+.|++|+|+|        ||++|||||+|++|||||++++.....+..++....+..|-|
T Consensus       133 ~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p  196 (393)
T 4gq1_A          133 SGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRP  196 (393)
T ss_dssp             TSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEET
T ss_pred             CCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECC
Confidence            47999999999998        789999999999999999998888777777766666666544

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.04  E-value=3.5e-10  Score=78.01  Aligned_cols=55  Identities=9%  Similarity=0.169  Sum_probs=43.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccc-ccccccCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE-RNLQDKLPP   66 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~-~~~~~~~~~   66 (70)
                      .|...|++++|||||++||+|+.||+|+|||+++++....+...|+ ...+..|-|
T Consensus       267 ~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp  322 (365)
T 4h5i_A          267 NRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP  322 (365)
T ss_dssp             SSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT
T ss_pred             CCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC
Confidence            6788999999999999999999999999999999876655433333 344555544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.03  E-value=2.8e-10  Score=74.50  Aligned_cols=36  Identities=19%  Similarity=0.370  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .|...|++++|+|||++|||||.||+|+|||+++++
T Consensus       304 ~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          304 AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            588899999999999999999999999999999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.01  E-value=7.7e-10  Score=77.88  Aligned_cols=56  Identities=16%  Similarity=0.134  Sum_probs=41.3

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      -.+|.+.|+||+|||||++||||+.||+|+|||. +++..-.+..+.....+.+|-|
T Consensus        12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fsp   67 (577)
T 2ymu_A           12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP   67 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECC
Confidence            4589999999999999999999999999999995 4554444443333334444433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.01  E-value=3.2e-10  Score=76.20  Aligned_cols=42  Identities=7%  Similarity=0.084  Sum_probs=32.2

Q ss_pred             eeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus         7 ~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      +.+..+|.+.|++++|+|+|++|||||.||+|||||++++..
T Consensus         6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~   47 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ   47 (316)
T ss_dssp             --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE
T ss_pred             eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc
Confidence            345568999999999999999999999999999999987754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.00  E-value=1.4e-09  Score=74.33  Aligned_cols=45  Identities=13%  Similarity=0.204  Sum_probs=40.9

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCCeEEEEEe
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGL-LKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~-IklWdi~~~~~~~~~~~   54 (70)
                      ..+|.+.|++++|+|+|++|||||.||+ |++||+++++....+..
T Consensus       191 ~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~  236 (355)
T 3vu4_A          191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRR  236 (355)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEEC
T ss_pred             EEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence            4589999999999999999999999998 99999999988777763

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.00  E-value=6.9e-10  Score=73.79  Aligned_cols=38  Identities=16%  Similarity=0.177  Sum_probs=34.7

Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus         9 I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      +..+|.+.|++++|+|+|++|||||.||+|+|||+.++
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~   41 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE   41 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC
Confidence            44589999999999999999999999999999999754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.00  E-value=1.2e-09  Score=70.41  Aligned_cols=41  Identities=20%  Similarity=0.235  Sum_probs=37.4

Q ss_pred             eeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus         7 ~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .++..+|.+.|++++|+|++++||+|+.||.|++||+.++.
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~   44 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT   44 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC
Confidence            45667899999999999999999999999999999998764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.00  E-value=1.4e-09  Score=74.40  Aligned_cols=46  Identities=20%  Similarity=0.318  Sum_probs=40.0

Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus         9 I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .-.+|.+.|+|++|+|++++|||||.||+|++||..++.....+..
T Consensus        59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~  104 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM  104 (354)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec
Confidence            3458999999999999999999999999999999988876655544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.96  E-value=2.7e-09  Score=72.13  Aligned_cols=47  Identities=17%  Similarity=0.186  Sum_probs=40.3

Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus         9 I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      .-.+|.+.|.+++|+|++++|||||.||+|++||+.++.....+..+
T Consensus        50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~   96 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR   96 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECS
T ss_pred             eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecC
Confidence            34579999999999999999999999999999999888766555443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.94  E-value=3.9e-09  Score=71.25  Aligned_cols=57  Identities=19%  Similarity=0.114  Sum_probs=45.1

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      ...|...|.+++|+|++.+|+|||.||+|++||+++++....+..+.....+..|-|
T Consensus        72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp  128 (343)
T 2xzm_R           72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP  128 (343)
T ss_dssp             ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS
T ss_pred             hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC
Confidence            357999999999999999999999999999999999887666555444444444433

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.93  E-value=2.4e-09  Score=71.93  Aligned_cols=54  Identities=7%  Similarity=0.004  Sum_probs=43.1

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKL   64 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~   64 (70)
                      ..|...|.+++|+|+|++|+|||.||+||+||+++++....+..+.....+..|
T Consensus        62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~  115 (319)
T 3frx_A           62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI  115 (319)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEE
Confidence            479999999999999999999999999999999998766555544333333333

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=98.92  E-value=2.7e-09  Score=69.25  Aligned_cols=43  Identities=12%  Similarity=0.265  Sum_probs=37.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .|...|.+++|+|++++||||+.||+|++||+++++....+..
T Consensus        65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~  107 (318)
T 4ggc_A           65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS  107 (318)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC
Confidence            5788899999999999999999999999999999876655443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.91  E-value=4.7e-09  Score=69.14  Aligned_cols=47  Identities=17%  Similarity=0.204  Sum_probs=39.8

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ....+|.+.|++++|+|++++||+|+.||.|++|++.+++....+..
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~   63 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG   63 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc
Confidence            33457999999999999999999999999999999988876554433

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.91  E-value=2.7e-09  Score=73.17  Aligned_cols=54  Identities=15%  Similarity=0.041  Sum_probs=42.6

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKL   64 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~   64 (70)
                      .+|.+.|++++|+|+|++||+|+.||+|++||+++++....+..+.....+.+|
T Consensus       136 ~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~  189 (357)
T 4g56_B          136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAA  189 (357)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            368899999999999999999999999999999988766655443333333333

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.91  E-value=3.6e-09  Score=70.48  Aligned_cols=53  Identities=21%  Similarity=0.206  Sum_probs=43.1

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccccccccc
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDK   63 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~   63 (70)
                      ..|...|.+++|+|++++|||||.||+|++||+++.+..-.+..+.+...+..
T Consensus       225 ~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~  277 (304)
T 2ynn_A          225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA  277 (304)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEE
Confidence            36899999999999999999999999999999999886666554444444444

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.90  E-value=2.4e-09  Score=74.51  Aligned_cols=45  Identities=13%  Similarity=0.149  Sum_probs=39.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      .+|.+.|++++|+|++.+|||||.||+|++||+.+++....+..+
T Consensus       105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h  149 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH  149 (410)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC
T ss_pred             cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc
Confidence            478999999999999999999999999999999988765554433

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.90  E-value=3e-09  Score=72.03  Aligned_cols=54  Identities=15%  Similarity=0.086  Sum_probs=42.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKL   64 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~   64 (70)
                      ..|.+.|.+++|+|++++|++|+.||+|++||+++++....+..++....+.+|
T Consensus       245 ~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~  298 (321)
T 3ow8_A          245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY  298 (321)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEE
Confidence            368899999999999999999999999999999988776665544333333333

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.88  E-value=1.8e-09  Score=74.65  Aligned_cols=37  Identities=14%  Similarity=0.170  Sum_probs=33.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .+|.+.|++++|+|||++|||||.||+|||||+.+..
T Consensus       361 ~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          361 KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            3799999999999999999999999999999987654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.88  E-value=4.2e-09  Score=72.81  Aligned_cols=43  Identities=12%  Similarity=0.265  Sum_probs=37.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .|...|+||+|+|+|++||+|+.||+|+|||+++++....+..
T Consensus       145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~  187 (420)
T 4gga_A          145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS  187 (420)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC
Confidence            5778899999999999999999999999999998876555433

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.88  E-value=5.3e-09  Score=68.53  Aligned_cols=46  Identities=4%  Similarity=-0.109  Sum_probs=40.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecc
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQ   56 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~   56 (70)
                      .+|.+.|.+++|+|++++||+|+.||.|++||+.+++....+..+.
T Consensus        29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~   74 (369)
T 3zwl_B           29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT   74 (369)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCS
T ss_pred             EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcC
Confidence            4799999999999999999999999999999999887666554443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.85  E-value=7.8e-09  Score=69.96  Aligned_cols=54  Identities=13%  Similarity=0.223  Sum_probs=42.2

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKL   64 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~   64 (70)
                      ..|...|++++|+|++++||+|+.||+|++||+++......+..+.....+..|
T Consensus       203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  256 (321)
T 3ow8_A          203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF  256 (321)
T ss_dssp             CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEE
Confidence            368899999999999999999999999999999988766554433333333333

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.85  E-value=8.2e-09  Score=69.33  Aligned_cols=43  Identities=23%  Similarity=0.323  Sum_probs=38.1

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      ..|.+.|++++|+|+|++||+|+.||+|++||+.+.+....+.
T Consensus       193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~  235 (319)
T 3frx_A          193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS  235 (319)
T ss_dssp             CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence            4789999999999999999999999999999999887655543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.84  E-value=7.7e-09  Score=69.78  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=33.5

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ..|.+.|++++|+|+|++||+|+.||+|++||+.+..
T Consensus       210 ~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~  246 (343)
T 2xzm_R          210 KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT  246 (343)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred             cCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            4789999999999999999999999999999995443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.83  E-value=3.7e-09  Score=73.59  Aligned_cols=56  Identities=21%  Similarity=0.326  Sum_probs=41.7

Q ss_pred             cCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEEeccc--ccccccCCC
Q psy11104         11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE--RNLQDKLPP   66 (70)
Q Consensus        11 ~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~--~~~~~~~~~   66 (70)
                      .+|...|+||+|||. +.+||+|+.||+|+|||+.+++....+...+|  ...+.+|-|
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p  174 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP  174 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECS
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeC
Confidence            367889999999995 78999999999999999988775554443222  344445544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.83  E-value=6.8e-09  Score=71.23  Aligned_cols=42  Identities=14%  Similarity=0.274  Sum_probs=37.6

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      .+|.+.|++++|+|+|++|||||.||+|++||++++.....+
T Consensus       246 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~  287 (380)
T 3iz6_a          246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY  287 (380)
T ss_dssp             CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred             CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence            478999999999999999999999999999999988765443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.83  E-value=1.5e-08  Score=66.70  Aligned_cols=47  Identities=13%  Similarity=0.201  Sum_probs=40.4

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecc
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQ   56 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~   56 (70)
                      ...|...|.+++|+|++++|++|+.||.|++||+++++....+..+.
T Consensus        61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  107 (312)
T 4ery_A           61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS  107 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCC
Confidence            34788999999999999999999999999999999988666555443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.83  E-value=1.8e-08  Score=64.75  Aligned_cols=40  Identities=20%  Similarity=0.303  Sum_probs=35.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      ..|.+.|++++|+|++++||+||.||.|++||+.+++..-
T Consensus       303 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          303 DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             CTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred             ecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence            4688999999999999999999999999999998876443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.82  E-value=9.8e-09  Score=69.44  Aligned_cols=47  Identities=15%  Similarity=0.120  Sum_probs=40.5

Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus         9 I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      +...|.+.|.+++|+|++++|++|+.||+|++||+++++....+..+
T Consensus       134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h  180 (420)
T 3vl1_A          134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH  180 (420)
T ss_dssp             ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC
T ss_pred             ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC
Confidence            33479999999999999999999999999999999988766655443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.82  E-value=9.8e-09  Score=69.35  Aligned_cols=45  Identities=11%  Similarity=0.026  Sum_probs=39.1

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      ..|.+.|.+++|+|++++|++|+.||+|++||++++.....+..+
T Consensus       181 ~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h  225 (340)
T 1got_B          181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH  225 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence            368999999999999999999999999999999988766554443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.81  E-value=3.3e-09  Score=69.95  Aligned_cols=40  Identities=15%  Similarity=0.165  Sum_probs=35.6

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .+...|.+.|.+++|+|++++||+|+.||.|++||+....
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~   44 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET   44 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc
Confidence            3456799999999999999999999999999999997544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.80  E-value=8.1e-09  Score=70.78  Aligned_cols=40  Identities=18%  Similarity=0.126  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104         12 PNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        12 ~~~~~V~~va~sp-dg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      +|.+.|++|+||| |+.+|||||.||+|++|++.+......
T Consensus       309 ~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~  349 (357)
T 4g56_B          309 SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTEN  349 (357)
T ss_dssp             CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-------
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc
Confidence            7999999999999 799999999999999999977654443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.79  E-value=1.5e-08  Score=68.32  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=29.6

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      ...|.+.|.+++|+|+|++||+||.||+|++||++.
T Consensus       103 ~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~  138 (330)
T 2hes_X          103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE  138 (330)
T ss_dssp             EC----CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred             EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence            347999999999999999999999999999999954

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.79  E-value=1.1e-08  Score=68.92  Aligned_cols=38  Identities=16%  Similarity=0.282  Sum_probs=34.6

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ...|...|.+++|+|++.+|||||.||+||+||..++.
T Consensus       149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~  186 (330)
T 2hes_X          149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD  186 (330)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE
T ss_pred             eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence            34789999999999999999999999999999987764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.79  E-value=8.9e-09  Score=70.99  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=34.0

Q ss_pred             cCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCe
Q psy11104         11 IPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        11 ~~~~~~V~~va~spdg-~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      ..|.+.|++|+|+|++ ++|||||+||+|+|||+++++.
T Consensus       254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~  292 (344)
T 4gqb_B          254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL  292 (344)
T ss_dssp             ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred             cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence            3689999999999997 6899999999999999988753

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.79  E-value=7.7e-09  Score=69.23  Aligned_cols=37  Identities=16%  Similarity=0.267  Sum_probs=29.7

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ..|.+.|.+++|+|++++||+|+.||+|++||+.++.
T Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~   88 (377)
T 3dwl_C           52 SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG   88 (377)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred             ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            3789999999999999999999999999999998876

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.79  E-value=1.7e-08  Score=66.07  Aligned_cols=41  Identities=10%  Similarity=0.303  Sum_probs=35.7

Q ss_pred             eecCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCeE
Q psy11104          9 IAIPNNTKVNCLAWHQN---QGWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus         9 I~~~~~~~V~~va~spd---g~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      +..+|.+.|++++|+|+   |++||+|+.||.|++||+++....
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~   77 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT   77 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce
Confidence            44579999999999999   699999999999999999984433

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.78  E-value=8.4e-09  Score=71.72  Aligned_cols=55  Identities=13%  Similarity=0.118  Sum_probs=44.2

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLP   65 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~   65 (70)
                      .+|.+.|++++|+|+|++|++||.||+|++||+++++....+..+.....+..|-
T Consensus       335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~  389 (410)
T 1vyh_C          335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH  389 (410)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC
T ss_pred             ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc
Confidence            3689999999999999999999999999999999887766665554444444443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.78  E-value=4.1e-08  Score=66.56  Aligned_cols=40  Identities=15%  Similarity=0.209  Sum_probs=35.5

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeE
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      ..+|.+.|.+++|+|+|++||+|+.||+|++||+.++...
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~   96 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFE   96 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EE
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeE
Confidence            3579999999999999999999999999999999877643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.78  E-value=2e-08  Score=73.20  Aligned_cols=38  Identities=8%  Similarity=0.096  Sum_probs=34.6

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ...|.+.|++++|+|+|++||||+.||+|||||+.+++
T Consensus        55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~   92 (611)
T 1nr0_A           55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT   92 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred             ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc
Confidence            44799999999999999999999999999999997554

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.77  E-value=1.4e-08  Score=71.42  Aligned_cols=40  Identities=20%  Similarity=0.175  Sum_probs=34.2

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      .+|.+.|.+++|+|||++||+|+.||+|+|||.. ++....
T Consensus        54 ~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~~~~~   93 (577)
T 2ymu_A           54 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT   93 (577)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEEEE
Confidence            4799999999999999999999999999999964 443333

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.77  E-value=2.2e-08  Score=73.50  Aligned_cols=55  Identities=15%  Similarity=0.089  Sum_probs=43.9

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKL   64 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~   64 (70)
                      ...|.+.|.+++|+|+|++|+|||.||+|+|||+.++.....+..+.....+..|
T Consensus       426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~  480 (694)
T 3dm0_A          426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF  480 (694)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEE
Confidence            3479999999999999999999999999999999988776665544433333333

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.75  E-value=2e-08  Score=73.15  Aligned_cols=43  Identities=14%  Similarity=0.112  Sum_probs=38.0

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      ...|.+.|++++|+|||++|||||.||+|++||+.+++....+
T Consensus       186 l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~  228 (611)
T 1nr0_A          186 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF  228 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred             eccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeee
Confidence            3479999999999999999999999999999999888765443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.75  E-value=8e-09  Score=67.66  Aligned_cols=39  Identities=26%  Similarity=0.276  Sum_probs=34.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .|.+++|+|++++||+|+.||.|++||+++++....+..
T Consensus       275 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (368)
T 3mmy_A          275 AVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ  313 (368)
T ss_dssp             CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             ceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence            799999999999999999999999999998876555443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.75  E-value=1.1e-08  Score=68.76  Aligned_cols=43  Identities=16%  Similarity=0.229  Sum_probs=36.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeE-EEEEe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT-IMIIL   54 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~-~~~~~   54 (70)
                      .|...|.+++|+|+|.+||+|+.||.|++||+++++.. ..+..
T Consensus       168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~  211 (343)
T 3lrv_A          168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV  211 (343)
T ss_dssp             CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec
Confidence            45668999999999999999999999999999988866 44443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.75  E-value=1.9e-08  Score=64.85  Aligned_cols=47  Identities=13%  Similarity=0.073  Sum_probs=39.5

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      +.-..|.+.|.+++| |++++||+|+.||.|++||+.++.....+..+
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~   58 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTG   58 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEEC
T ss_pred             HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecC
Confidence            344589999999999 99999999999999999999887665555444

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.73  E-value=2.5e-08  Score=68.09  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=33.8

Q ss_pred             cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q psy11104         11 IPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        11 ~~~~~~V~~va~sp-dg~~LasGg~Dg~IklWdi~~~   46 (70)
                      .+|.+.|.+++|+| ++++||+|+.||+|++||+.++
T Consensus        78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred             ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence            36899999999999 8999999999999999999887

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.72  E-value=2.5e-08  Score=68.66  Aligned_cols=40  Identities=10%  Similarity=0.418  Sum_probs=34.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      .|++++|+|+|++||+|+.||+|++||+++++....+..+
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h  164 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH  164 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC
Confidence            4999999999999999999999999999988665544433

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.71  E-value=6.6e-08  Score=63.28  Aligned_cols=43  Identities=7%  Similarity=-0.017  Sum_probs=38.3

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      ..|.+.|.+++|+|++++|++|+.||.|++||+.+++....+.
T Consensus        71 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  113 (369)
T 3zwl_B           71 DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK  113 (369)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee
Confidence            3689999999999999999999999999999999887665544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.71  E-value=4.7e-08  Score=66.24  Aligned_cols=38  Identities=18%  Similarity=0.265  Sum_probs=34.8

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      ..|.+.|.+++|+|++++||+|+.||+|++||++++..
T Consensus       102 ~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~  139 (345)
T 3fm0_A          102 EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE  139 (345)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred             cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence            47999999999999999999999999999999987653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.70  E-value=2.4e-08  Score=66.25  Aligned_cols=37  Identities=16%  Similarity=0.173  Sum_probs=33.4

Q ss_pred             cCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCC
Q psy11104         11 IPNNTKVNCLAWHQN--QGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        11 ~~~~~~V~~va~spd--g~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .+|.+.|++++|+|+  +++|||||.||+|++||++++.
T Consensus        50 ~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~   88 (297)
T 2pm7_B           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR   88 (297)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred             ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence            479999999999874  8999999999999999998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.70  E-value=4.5e-08  Score=65.04  Aligned_cols=42  Identities=19%  Similarity=0.368  Sum_probs=36.9

Q ss_pred             eeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeE
Q psy11104          8 KIAIPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus         8 ~I~~~~~~~V~~va~sp-dg~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      .+...|.+.|++++|+| ++++||+|+.||.|++||+.++...
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~   79 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQ   79 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSS
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCccc
Confidence            34557999999999999 9999999999999999999876543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.68  E-value=3.3e-08  Score=67.14  Aligned_cols=36  Identities=8%  Similarity=0.300  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .+.+.|.+++|+|+|++||+|+.||.|+|||+.++.
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~   61 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQEN   61 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC--
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCC
Confidence            467899999999999999999999999999998776

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.68  E-value=2.2e-08  Score=65.66  Aligned_cols=40  Identities=18%  Similarity=0.229  Sum_probs=36.8

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .+..+|.+.|.+++|+|++++||+|+.||.|++||+.++.
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~   44 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA   44 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC
Confidence            4556899999999999999999999999999999998776

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.68  E-value=5.8e-08  Score=66.31  Aligned_cols=46  Identities=9%  Similarity=0.069  Sum_probs=39.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccc
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE   57 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~   57 (70)
                      .|.+.|.+++|+|++..|++|+.||+|++||+++++....+..+..
T Consensus       152 ~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~  197 (354)
T 2pbi_B          152 MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGA  197 (354)
T ss_dssp             ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC
Confidence            5889999999999999999999999999999999887666554433

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.67  E-value=2.8e-08  Score=69.14  Aligned_cols=45  Identities=11%  Similarity=0.220  Sum_probs=39.6

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      .+|...|++++|+|+|++|++|+.||+|+|||+.++.....+..+
T Consensus       293 ~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~  337 (435)
T 4e54_B          293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH  337 (435)
T ss_dssp             CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCC
T ss_pred             eeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecc
Confidence            368899999999999999999999999999999988876665443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=98.67  E-value=6.2e-08  Score=66.18  Aligned_cols=35  Identities=20%  Similarity=0.278  Sum_probs=32.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      |.+.|++++|+|+|++||+|+.||+|++||++...
T Consensus       239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            89999999999999999999999999999997653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.67  E-value=5.2e-08  Score=65.44  Aligned_cols=54  Identities=9%  Similarity=0.174  Sum_probs=43.7

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCC
Q psy11104         12 PNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLP   65 (70)
Q Consensus        12 ~~~~~V~~va~sp-dg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~   65 (70)
                      .|...|.+++|+| ++++|++|+.||+|++||+++++....+..+.....+..|-
T Consensus       260 ~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s  314 (416)
T 2pm9_A          260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFA  314 (416)
T ss_dssp             CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEEC
T ss_pred             CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEEC
Confidence            6889999999999 89999999999999999999988776666554444444443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.66  E-value=3.2e-08  Score=72.24  Aligned_cols=48  Identities=15%  Similarity=0.230  Sum_probs=41.2

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      +...+|.+.|.+++|||+|++||+|+.||.|++||+.++.....+..+
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~   54 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVT   54 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecC
Confidence            344578999999999999999999999999999999998766665544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.66  E-value=4.9e-08  Score=64.01  Aligned_cols=41  Identities=17%  Similarity=0.319  Sum_probs=37.0

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         12 PNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        12 ~~~~~V~~va~sp-dg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      .|.+.|.+++|+| ++.+|++|+.||.|++||+++++....+
T Consensus       113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  154 (366)
T 3k26_A          113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF  154 (366)
T ss_dssp             SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe
Confidence            6899999999999 8999999999999999999988765554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.66  E-value=6e-08  Score=65.31  Aligned_cols=44  Identities=30%  Similarity=0.476  Sum_probs=39.0

Q ss_pred             ecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         10 AIPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg-~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      ..+|.+.|++++|+|++ ++||+|+.||.|++||+.++.....+.
T Consensus        69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  113 (383)
T 3ei3_B           69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ  113 (383)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC
T ss_pred             ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee
Confidence            35789999999999998 999999999999999999887766554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.65  E-value=5.6e-08  Score=66.92  Aligned_cols=47  Identities=19%  Similarity=0.149  Sum_probs=40.4

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccc
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE   57 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~   57 (70)
                      .+|...|.+++|+|++++|++||.||.|++||+++++....+..+..
T Consensus       307 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~  353 (393)
T 1erj_A          307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN  353 (393)
T ss_dssp             ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC
Confidence            36889999999999999999999999999999999887666554433

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.64  E-value=3.5e-08  Score=65.21  Aligned_cols=38  Identities=13%  Similarity=0.252  Sum_probs=34.9

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ...|.+.|.+++|+|++++||+|+.||.|++||+.+++
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~   41 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK   41 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc
Confidence            34588999999999999999999999999999998886

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=98.63  E-value=5.8e-08  Score=69.14  Aligned_cols=42  Identities=19%  Similarity=0.227  Sum_probs=36.3

Q ss_pred             cCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        11 ~~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      ..|.+.|.+++|+|+ +.+||+|+.||+|++||++++......
T Consensus       146 ~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~  188 (434)
T 2oit_A          146 KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT  188 (434)
T ss_dssp             CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred             CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence            358899999999998 899999999999999999988554433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=98.63  E-value=5.2e-08  Score=65.31  Aligned_cols=37  Identities=14%  Similarity=0.125  Sum_probs=33.5

Q ss_pred             cCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCC
Q psy11104         11 IPNNTKVNCLAWHQ--NQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        11 ~~~~~~V~~va~sp--dg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .+|.+.|++++|+|  ++++|||||.||+|++||++++.
T Consensus        54 ~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~   92 (316)
T 3bg1_A           54 RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT   92 (316)
T ss_dssp             ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC
T ss_pred             cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc
Confidence            47999999999986  38999999999999999998875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.63  E-value=4e-08  Score=67.23  Aligned_cols=38  Identities=16%  Similarity=0.354  Sum_probs=34.4

Q ss_pred             eeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q psy11104          8 KIAIPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus         8 ~I~~~~~~~V~~va~sp-dg~~LasGg~Dg~IklWdi~~   45 (70)
                      ++...|.+.|++++|+| ++++||+||.||+|++||+.+
T Consensus        57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~   95 (437)
T 3gre_A           57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKE   95 (437)
T ss_dssp             EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHH
T ss_pred             eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcc
Confidence            44467899999999999 999999999999999999866

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.63  E-value=1e-07  Score=65.34  Aligned_cols=45  Identities=18%  Similarity=0.288  Sum_probs=39.4

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      ..|.+.|.+++|+|++++|++|+.||.|++||++++.....+..+
T Consensus       214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  258 (401)
T 4aez_A          214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH  258 (401)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC
T ss_pred             cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC
Confidence            368999999999999999999999999999999988766655443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.63  E-value=1.3e-07  Score=63.63  Aligned_cols=41  Identities=12%  Similarity=0.215  Sum_probs=36.3

Q ss_pred             eeecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCe
Q psy11104          8 KIAIPNNTKVNCLAWHQ--NQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus         8 ~I~~~~~~~V~~va~sp--dg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      .+..+|.+.|.+++|+|  +++++++|+.||+|++||+++++.
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~  161 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ  161 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE
Confidence            45557788999999999  999999999999999999998877

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.62  E-value=7e-08  Score=64.61  Aligned_cols=41  Identities=17%  Similarity=0.222  Sum_probs=37.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      |...|.+++|+|++++|++|+.||.|++||+++++....+.
T Consensus       290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            88999999999999999999999999999999987766655

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.62  E-value=8.4e-08  Score=73.57  Aligned_cols=55  Identities=24%  Similarity=0.231  Sum_probs=44.0

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKL   64 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~   64 (70)
                      ..+|.+.|++++|+|+|++||+|+.||+|++||+.++.....+..+.....+..|
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~  665 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF  665 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEE
Confidence            3479999999999999999999999999999999998877666544333333333

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.61  E-value=6.1e-08  Score=66.13  Aligned_cols=41  Identities=20%  Similarity=0.401  Sum_probs=37.0

Q ss_pred             CCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         12 PNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        12 ~~~~~V~~va~spdg-~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      .|.+.|.+++|+|++ .+|++|+.||+|++||+++++....+
T Consensus       129 ~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  170 (402)
T 2aq5_A          129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL  170 (402)
T ss_dssp             CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence            689999999999997 69999999999999999988766555

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.60  E-value=1.2e-07  Score=62.48  Aligned_cols=38  Identities=16%  Similarity=0.157  Sum_probs=34.8

Q ss_pred             cCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCe
Q psy11104         11 IPNNTKVNCLAWHQN--QGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        11 ~~~~~~V~~va~spd--g~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      ..|.+.|.+++|+|+  +++|++|+.||.|++||+.+++.
T Consensus        52 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   91 (379)
T 3jrp_A           52 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW   91 (379)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE
T ss_pred             cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce
Confidence            378999999999987  99999999999999999998863

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.59  E-value=1.1e-07  Score=63.56  Aligned_cols=41  Identities=12%  Similarity=0.190  Sum_probs=36.5

Q ss_pred             eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104          5 LSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus         5 ~~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ...++..+|.+.|++++|+|  ++||+|+.||+|++||+.++.
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~   47 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLD   47 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCT
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcc
Confidence            44556678999999999999  899999999999999998887

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.59  E-value=4.3e-08  Score=65.55  Aligned_cols=40  Identities=30%  Similarity=0.404  Sum_probs=35.0

Q ss_pred             eeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104          6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus         6 ~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      .+.+..+|.+.|.+++|+|++++||+|+.||+|++||++.
T Consensus       138 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  177 (377)
T 3dwl_C          138 SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYV  177 (377)
T ss_dssp             CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECC
T ss_pred             eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEe
Confidence            3445556999999999999999999999999999999853

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.59  E-value=6.8e-08  Score=64.18  Aligned_cols=40  Identities=13%  Similarity=0.072  Sum_probs=33.3

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      .+|.+.|.+++|+|++++|++|+.||.|++||+++.+..-
T Consensus       331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~  370 (408)
T 4a11_B          331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP  370 (408)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred             ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence            3688999999999999999999999999999998876543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.59  E-value=1.5e-07  Score=64.34  Aligned_cols=41  Identities=10%  Similarity=0.161  Sum_probs=36.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      |.+.|.+++|+|++++|++|+.||+|++||+++++....+.
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  253 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS  253 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe
Confidence            78999999999999999999999999999999876555443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.59  E-value=2.1e-07  Score=61.39  Aligned_cols=39  Identities=28%  Similarity=0.388  Sum_probs=34.9

Q ss_pred             eeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11104          6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus         6 ~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~   44 (70)
                      ...+..+|...|.+++|+|++++|++|+.||.|++||++
T Consensus       134 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (372)
T 1k8k_C          134 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  172 (372)
T ss_dssp             EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcc
Confidence            445567889999999999999999999999999999964

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.58  E-value=1.5e-07  Score=61.68  Aligned_cols=47  Identities=15%  Similarity=0.268  Sum_probs=37.4

Q ss_pred             eeeecCCCCCeEEEEEcCCCC-EEEEEeC---CCcEEEEECCCCCeEEEEE
Q psy11104          7 KKIAIPNNTKVNCLAWHQNQG-WIAVGGD---DGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus         7 ~~I~~~~~~~V~~va~spdg~-~LasGg~---Dg~IklWdi~~~~~~~~~~   53 (70)
                      .++..+|.+.|.+++|+|++. ++++|+.   ||.|++||+.+++......
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~   61 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE   61 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee
Confidence            456678999999999999985 5667776   9999999999887654443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.58  E-value=2e-07  Score=63.82  Aligned_cols=46  Identities=15%  Similarity=0.366  Sum_probs=39.4

Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus         9 I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      +...|.+.|.+++|+|++++||+|+.||.|++||+.+++....+..
T Consensus       129 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  174 (401)
T 4aez_A          129 AETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG  174 (401)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             eecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC
Confidence            3445889999999999999999999999999999998876655543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.58  E-value=9.7e-08  Score=62.55  Aligned_cols=41  Identities=17%  Similarity=0.298  Sum_probs=35.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ...|.+++|+|++++|++|+.||.|++||+.+++....+..
T Consensus       251 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  291 (342)
T 1yfq_A          251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             ceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence            44999999999999999999999999999998876555433

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.58  E-value=1.5e-07  Score=63.60  Aligned_cols=43  Identities=14%  Similarity=0.084  Sum_probs=38.2

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      ..|.+.|.+++|+|++++|++|+.||+|++||+++++....+.
T Consensus       178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  220 (420)
T 3vl1_A          178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN  220 (420)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee
Confidence            3689999999999999999999999999999999887665544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.57  E-value=1.5e-07  Score=60.64  Aligned_cols=45  Identities=22%  Similarity=0.251  Sum_probs=38.3

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecc
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQ   56 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~   56 (70)
                      ..|.+.|.+++|+|++ .|++|+.||.|++||+++++....+..+.
T Consensus       222 ~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  266 (313)
T 3odt_A          222 EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA  266 (313)
T ss_dssp             ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred             hcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence            3688999999999999 68999999999999999988766655443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.56  E-value=1.5e-07  Score=72.13  Aligned_cols=55  Identities=18%  Similarity=0.175  Sum_probs=45.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      .|.+.|.+++|+|+|++||+|+.||+|++||+.+++....+..+.....+..|.|
T Consensus       655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~  709 (1249)
T 3sfz_A          655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN  709 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEec
Confidence            6899999999999999999999999999999999987776665544444444433

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.56  E-value=1e-07  Score=64.00  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=32.8

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      ..|.+.|.+++|+|++++||+|+.||.|++||+.+
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~   98 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNE   98 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSS
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeeccc
Confidence            36888999999999999999999999999999987

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.54  E-value=1.3e-07  Score=64.16  Aligned_cols=37  Identities=11%  Similarity=0.263  Sum_probs=34.6

Q ss_pred             CCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCe
Q psy11104         12 PNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        12 ~~~~~V~~va~spdg-~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      .|...|++++|+|++ ++||+|+.||+|++||++++..
T Consensus       224 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          224 ELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             GCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred             ccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence            688999999999998 9999999999999999988775

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.54  E-value=1.3e-07  Score=68.98  Aligned_cols=53  Identities=19%  Similarity=0.228  Sum_probs=43.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKL   64 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~   64 (70)
                      .|.+.|.+++|+|++++||+|+.||.|++||+.+++....+..+.....+..|
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~  105 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV  105 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEE
Confidence            68999999999999999999999999999999999877776554433333333

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.53  E-value=1.5e-07  Score=61.60  Aligned_cols=54  Identities=17%  Similarity=0.285  Sum_probs=41.9

Q ss_pred             CCCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCCC
Q psy11104         13 NNTKVNCLAWHQN----QGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP   66 (70)
Q Consensus        13 ~~~~V~~va~spd----g~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~~   66 (70)
                      |...|.+++|+|+    |.+||+|+.||.|++||+.+++....+..+.....+.+|-|
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~  125 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP  125 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECS
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECC
Confidence            7788999999999    67999999999999999998887666554444444444433

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.53  E-value=3.2e-07  Score=59.42  Aligned_cols=44  Identities=16%  Similarity=0.065  Sum_probs=38.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ..|...|.+++|+|++++|++|+.||.|++||+++++....+..
T Consensus       138 ~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~  181 (337)
T 1gxr_A          138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG  181 (337)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec
Confidence            36788999999999999999999999999999998866555443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.53  E-value=1.6e-07  Score=61.52  Aligned_cols=36  Identities=14%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIA-VGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~La-sGg~Dg~IklWdi~~~~   47 (70)
                      .|.+.|.+++|+|++++|| ||+.||.|++||+.+.+
T Consensus       319 ~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          319 LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            6889999999999999998 89999999999987654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.51  E-value=2.1e-07  Score=64.05  Aligned_cols=45  Identities=7%  Similarity=0.109  Sum_probs=39.2

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      .+|.+.|.+++|+|++++|++|+.||+|++||+++++....+..+
T Consensus       307 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h  351 (464)
T 3v7d_B          307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH  351 (464)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Confidence            368899999999999999999999999999999988766555443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.51  E-value=1.2e-07  Score=66.45  Aligned_cols=42  Identities=17%  Similarity=0.247  Sum_probs=37.4

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      ..|...|.+++|+|+|++||+|+.||.|++||+++++....+
T Consensus       485 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~  526 (615)
T 1pgu_A          485 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR  526 (615)
T ss_dssp             SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC
T ss_pred             CCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEe
Confidence            468899999999999999999999999999999988765443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.51  E-value=1.7e-07  Score=68.76  Aligned_cols=41  Identities=20%  Similarity=0.209  Sum_probs=36.8

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      ...|.+.|++++|+|+|++|+|||.||+|++||+++++...
T Consensus       557 ~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~  597 (694)
T 3dm0_A          557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY  597 (694)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            34799999999999999999999999999999998886543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.51  E-value=3.5e-07  Score=59.28  Aligned_cols=37  Identities=14%  Similarity=0.212  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      +|...|.+++|+|++++|++|+.||.|++||+++++.
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  131 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP  131 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc
Confidence            6888999999999999999999999999999998874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.50  E-value=7.3e-08  Score=74.39  Aligned_cols=35  Identities=14%  Similarity=0.185  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      +|...|++|+|+|||++||+|+.||+|+|||++++
T Consensus       486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~  520 (902)
T 2oaj_A          486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVN  520 (902)
T ss_dssp             SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred             CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence            78889999999999999999999999999998766

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.50  E-value=2.5e-07  Score=61.55  Aligned_cols=40  Identities=28%  Similarity=0.545  Sum_probs=32.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      |.+.|.+++|+|++++||+|+.||.|++|| .++.....+.
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~  146 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLN  146 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEEC
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeecc
Confidence            577999999999999999999999999999 4444444433

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.47  E-value=2.5e-07  Score=71.47  Aligned_cols=38  Identities=18%  Similarity=0.121  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      .|...|++++|+|+|++||||++||+|++||+++++..
T Consensus       209 ~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          209 KRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             CBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred             ccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence            34678999999999999999999999999999887654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=98.46  E-value=1.1e-07  Score=68.94  Aligned_cols=32  Identities=19%  Similarity=0.380  Sum_probs=26.9

Q ss_pred             CCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11104         12 PNNTKVN-CLAWHQNQGWIAVGGDDGLLKVLKL   43 (70)
Q Consensus        12 ~~~~~V~-~va~spdg~~LasGg~Dg~IklWdi   43 (70)
                      +|...+. +++|||||++||||+.|++|||||+
T Consensus       323 gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          323 PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            5666555 6999999999999999999999995

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.44  E-value=2.8e-07  Score=63.45  Aligned_cols=42  Identities=14%  Similarity=0.174  Sum_probs=36.7

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      ..|.+.|.+++|+|++ +|++|+.||+|++||+++++....+.
T Consensus       159 ~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~  200 (464)
T 3v7d_B          159 SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFE  200 (464)
T ss_dssp             CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEEC
Confidence            3799999999999988 99999999999999999887655444

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.44  E-value=1.6e-07  Score=65.84  Aligned_cols=38  Identities=18%  Similarity=0.400  Sum_probs=34.7

Q ss_pred             CCCCeEEEEEcC----------CCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         13 NNTKVNCLAWHQ----------NQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        13 ~~~~V~~va~sp----------dg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      |...|++++|+|          ++++||+|+.||.|++||++++...+
T Consensus       530 h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  577 (615)
T 1pgu_A          530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII  577 (615)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCE
T ss_pred             CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceec
Confidence            899999999999          99999999999999999999874333

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.43  E-value=4.2e-07  Score=63.27  Aligned_cols=42  Identities=17%  Similarity=0.234  Sum_probs=34.8

Q ss_pred             CCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCCeEEEEE
Q psy11104         12 PNNTKVNCLAWHQNQGWI-AVGGDDGLLKVLKLD--TVSLTIMII   53 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~L-asGg~Dg~IklWdi~--~~~~~~~~~   53 (70)
                      +|.+.|.+++|+|+|++| |+|+.||+|++||+.  ++...-.+.
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~  144 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK  144 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee
Confidence            466789999999999996 999999999999998  665544443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.42  E-value=5.9e-07  Score=59.75  Aligned_cols=44  Identities=7%  Similarity=0.084  Sum_probs=38.1

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ..|...|.+++|+|++++|++|+.||.|++||+.+++....+..
T Consensus       146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  189 (425)
T 1r5m_A          146 NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL  189 (425)
T ss_dssp             CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred             cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeec
Confidence            36889999999999999999999999999999988876554433

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.42  E-value=7.2e-07  Score=59.98  Aligned_cols=43  Identities=21%  Similarity=0.186  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      .|...|.+++|+|++++|++|+.||.|++||++ ++....+..+
T Consensus       161 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h  203 (383)
T 3ei3_B          161 SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLH  203 (383)
T ss_dssp             CSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECS
T ss_pred             CCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccC
Confidence            345789999999999999999999999999994 4444444433

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.42  E-value=5.4e-07  Score=62.62  Aligned_cols=38  Identities=24%  Similarity=0.490  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCeE
Q psy11104         12 PNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus        12 ~~~~~V~~va~spdg~-~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      .|.+.|++++|+|+++ +||+|+.||+|++||+++....
T Consensus       275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~  313 (430)
T 2xyi_A          275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK  313 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC
T ss_pred             cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC
Confidence            7889999999999986 7999999999999999885443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.42  E-value=1.1e-07  Score=71.31  Aligned_cols=41  Identities=15%  Similarity=0.146  Sum_probs=33.3

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      .+..+|.+.|++++|+|+|++||+|+.||+|++||+.++..
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~   43 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH   43 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC
Confidence            35568999999999999999999999999999999985543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=98.41  E-value=4.3e-07  Score=65.81  Aligned_cols=44  Identities=11%  Similarity=-0.063  Sum_probs=35.7

Q ss_pred             CCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQ---NQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~sp---dg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      .|...++.++|+|   ++++|||||.|++|||||+++++..-++..+
T Consensus       176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~  222 (356)
T 2w18_A          176 LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID  222 (356)
T ss_dssp             ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC
Confidence            4566677777777   5688999999999999999999877776543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.40  E-value=4.5e-07  Score=66.68  Aligned_cols=55  Identities=7%  Similarity=0.099  Sum_probs=39.7

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccc-cccc--cCCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQER-NLQD--KLPP   66 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~-~~~~--~~~~   66 (70)
                      ..|.+.|.|++|+|+ ..||+|+.||+|++||++++.........++. ..+.  .+||
T Consensus       263 ~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~  320 (524)
T 2j04_B          263 SLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD  320 (524)
T ss_dssp             CCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT
T ss_pred             EcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC
Confidence            358899999999986 48999999999999999877544433333333 2332  4565

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=98.39  E-value=2.2e-07  Score=64.19  Aligned_cols=44  Identities=9%  Similarity=0.106  Sum_probs=33.8

Q ss_pred             cCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         11 IPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        11 ~~~~~~V~~va~spdg-~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ..|.+.|.+++|+|++ .+|++|+.||+|++||++++........
T Consensus       183 ~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~  227 (393)
T 4gq1_A          183 YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQ  227 (393)
T ss_dssp             EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-------
T ss_pred             cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccc
Confidence            3688999999999996 5899999999999999998876554433

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.39  E-value=3.5e-07  Score=69.90  Aligned_cols=32  Identities=28%  Similarity=0.635  Sum_probs=30.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .|.+++|||||++||+|++||+|+|||++++.
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~  162 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNS  162 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence            59999999999999999999999999999875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.38  E-value=1.4e-06  Score=60.63  Aligned_cols=44  Identities=9%  Similarity=-0.010  Sum_probs=38.6

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ..+|.+.|.+++|+ ++++|++|+.||+|++||+++++....+..
T Consensus       237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~  280 (450)
T 2vdu_B          237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDY  280 (450)
T ss_dssp             CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred             ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence            34789999999999 999999999999999999999887665543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=98.38  E-value=6.5e-07  Score=63.67  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~   44 (70)
                      +|...|.+++|+|+|++||+|+.||+|++||.+
T Consensus       190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            578899999999999999999999999999988

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.34  E-value=1.1e-06  Score=65.98  Aligned_cols=38  Identities=16%  Similarity=0.157  Sum_probs=35.0

Q ss_pred             cCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCe
Q psy11104         11 IPNNTKVNCLAWHQN--QGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        11 ~~~~~~V~~va~spd--g~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      ..|.+.|.+++|+|+  +++|++|+.||.|++||+.+++.
T Consensus        50 ~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~   89 (753)
T 3jro_A           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW   89 (753)
T ss_dssp             CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE
T ss_pred             cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc
Confidence            479999999999998  99999999999999999998763

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.27  E-value=3.3e-06  Score=58.65  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=33.7

Q ss_pred             ecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q psy11104         10 AIPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        10 ~~~~~~~V~~va~sp-dg~~LasGg~Dg~IklWdi~~~   46 (70)
                      ...|.+.|.+++|+| ++.+||+|+.||.|++||+++.
T Consensus       227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~  264 (430)
T 2xyi_A          227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN  264 (430)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred             ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            347899999999999 5889999999999999999876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.23  E-value=3.6e-06  Score=58.14  Aligned_cols=43  Identities=21%  Similarity=0.366  Sum_probs=36.3

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      ..|.+.|.+++|  ++++|++|+.||+|++||+++++....+..+
T Consensus       170 ~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h  212 (435)
T 1p22_A          170 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHH  212 (435)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCC
T ss_pred             cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCC
Confidence            378999999999  7899999999999999999988766555433

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.18  E-value=2.1e-06  Score=63.11  Aligned_cols=50  Identities=2%  Similarity=-0.117  Sum_probs=38.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCC
Q psy11104         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLP   65 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~   65 (70)
                      .|.+|+|+|+++.+|+|+.|++||+||++++.+...+..+.....+.+|-
T Consensus       357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S  406 (524)
T 2j04_B          357 NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVS  406 (524)
T ss_dssp             SCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECC
T ss_pred             cccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeC
Confidence            58999999999999999999999999999887655555443333333443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.03  E-value=4.9e-06  Score=63.60  Aligned_cols=35  Identities=17%  Similarity=0.164  Sum_probs=31.3

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      ..|...|.+++|||||++||+++.||.|++||.++
T Consensus        82 ~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~  116 (588)
T 2j04_A           82 SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK  116 (588)
T ss_dssp             TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc
Confidence            36678899999999999999999999999999433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.03  E-value=4.8e-06  Score=56.50  Aligned_cols=42  Identities=10%  Similarity=0.070  Sum_probs=37.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      .|.+.|++++|+|++.++++++.||.|++||+++++....+.
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~  208 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD  208 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc
Confidence            577899999999999999999999999999999877665554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.00  E-value=1.9e-05  Score=54.47  Aligned_cols=45  Identities=16%  Similarity=0.288  Sum_probs=35.8

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ....+|.+.|.+++|  ++++|++|+.||+|++||+++++....+..
T Consensus       250 ~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  294 (435)
T 1p22_A          250 RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG  294 (435)
T ss_dssp             EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC
Confidence            345578889999998  788999999999999999988876555543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.94  E-value=1.9e-05  Score=54.36  Aligned_cols=40  Identities=23%  Similarity=0.525  Sum_probs=35.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      .|.+.|.+++|+  +++|++|+.||.|++||+++++....+.
T Consensus       360 ~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~  399 (445)
T 2ovr_B          360 KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLV  399 (445)
T ss_dssp             SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeee
Confidence            388899999995  6899999999999999999998766663

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.91  E-value=2.5e-05  Score=54.61  Aligned_cols=38  Identities=13%  Similarity=0.132  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCeE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDG---LLKVLKLDTVSLT   49 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg---~IklWdi~~~~~~   49 (70)
                      .|...|.+++|||||++||+++.|+   .|++||+++++..
T Consensus       176 ~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~  216 (415)
T 2hqs_A          176 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR  216 (415)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred             CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE
Confidence            4678899999999999999999886   9999999987653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.89  E-value=2.3e-05  Score=54.00  Aligned_cols=41  Identities=20%  Similarity=0.149  Sum_probs=33.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      .+|.+.|.+++|+  +++|++|+.||+|++||+.+++....+.
T Consensus       156 ~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~  196 (445)
T 2ovr_B          156 VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY  196 (445)
T ss_dssp             CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC
Confidence            3688999999997  6799999999999999998886554443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.86  E-value=2.8e-05  Score=51.99  Aligned_cols=41  Identities=2%  Similarity=-0.018  Sum_probs=33.5

Q ss_pred             CCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         13 NNTKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        13 ~~~~V~~va~spdg~~L-asGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      +...+.+++|+|+|++| ++++.|+.|++||+++++....+.
T Consensus        30 ~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~   71 (391)
T 1l0q_A           30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP   71 (391)
T ss_dssp             CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE
Confidence            44569999999999876 788899999999998887654443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=97.77  E-value=4.4e-05  Score=47.97  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=32.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CCeE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT-VSLT   49 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~-~~~~   49 (70)
                      .|...|.+++|+|+|++||+++ |+.|++||+.+ ++..
T Consensus        39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~   76 (297)
T 2ojh_A           39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE   76 (297)
T ss_dssp             EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE
T ss_pred             cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce
Confidence            4678899999999999999987 88999999988 6543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.66  E-value=0.00015  Score=48.37  Aligned_cols=41  Identities=10%  Similarity=0.053  Sum_probs=33.8

Q ss_pred             CCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         14 NTKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        14 ~~~V~~va~spdg~~L-asGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ...+.+++|+|+|++| ++++.|+.|++||+++++....+..
T Consensus       243 ~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~  284 (391)
T 1l0q_A          243 GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAV  284 (391)
T ss_dssp             CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence            4468999999999876 7889999999999998876655543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.64  E-value=0.00018  Score=55.46  Aligned_cols=41  Identities=20%  Similarity=0.177  Sum_probs=36.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      +|...+.+++|||||++||+++.|+.|++||+++++.....
T Consensus       376 ~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~  416 (1045)
T 1k32_A          376 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE  416 (1045)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec
Confidence            66788999999999999999999999999999988755443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.56  E-value=0.00022  Score=46.01  Aligned_cols=42  Identities=14%  Similarity=0.068  Sum_probs=35.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      ...+.+++|+|+|++|++++.|+.|++||+++++..-.+...
T Consensus       279 ~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          279 PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            356789999999999999999999999999998876655544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.54  E-value=0.00016  Score=50.54  Aligned_cols=37  Identities=16%  Similarity=0.153  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCCe
Q psy11104         12 PNNTKVNCLAWHQNQGWIA-VGGDDGL--LKVLKLDTVSL   48 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~La-sGg~Dg~--IklWdi~~~~~   48 (70)
                      .|.+.+.+++|+|||+.|| +++.||.  |++||+++++.
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~  259 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI  259 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE
Confidence            4677899999999999888 7777765  99999988764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.49  E-value=0.00021  Score=48.36  Aligned_cols=38  Identities=8%  Similarity=-0.057  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeE
Q psy11104         12 PNNTKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~L-asGg~Dg~IklWdi~~~~~~   49 (70)
                      .|...+.+++|+|+++++ ++++.||.|++||+++++..
T Consensus       209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~  247 (433)
T 3bws_A          209 LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI  247 (433)
T ss_dssp             CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE
Confidence            578899999999999877 56668999999999877643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.47  E-value=2.8e-05  Score=55.68  Aligned_cols=42  Identities=14%  Similarity=-0.026  Sum_probs=32.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCeEEEEEec
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~-Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      +..+|++++|+|||+.||+++. ||+++||++.++ ....+..+
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-~~~~lt~~   62 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-ETVKLNRE   62 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT-EEEECCSS
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCC-CcEeeecc
Confidence            4567999999999999999887 999999998544 33333333

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.43  E-value=0.00062  Score=49.80  Aligned_cols=36  Identities=17%  Similarity=0.220  Sum_probs=31.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCCeEEEE
Q psy11104         17 VNCLAWHQNQGWIAVGGDDGLLKVLKL--DTVSLTIMI   52 (70)
Q Consensus        17 V~~va~spdg~~LasGg~Dg~IklWdi--~~~~~~~~~   52 (70)
                      +.+++|+|||++|++++.|++|++||+  ++.+..-.+
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i  218 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI  218 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence            899999999999999999999999999  666544333

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.40  E-value=0.00041  Score=50.51  Aligned_cols=37  Identities=5%  Similarity=-0.057  Sum_probs=32.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCCeEE
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGD-DG-----LLKVLKLDTVSLTI   50 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~-Dg-----~IklWdi~~~~~~~   50 (70)
                      ...+.+++|||||++||+++. ||     .|++||+.+++..-
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~   78 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL   78 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE
Confidence            456899999999999999998 88     99999999886543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=97.38  E-value=0.00041  Score=43.45  Aligned_cols=39  Identities=5%  Similarity=-0.100  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCCeEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDD-----------GLLKVLKLDTVSLTI   50 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~D-----------g~IklWdi~~~~~~~   50 (70)
                      .|...+.+++|+|+|++|+.++.|           +.|++||+++++...
T Consensus       214 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  263 (297)
T 2ojh_A          214 DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET  263 (297)
T ss_dssp             CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE
T ss_pred             cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee
Confidence            456678999999999999988876           569999998876543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.38  E-value=0.00019  Score=51.36  Aligned_cols=38  Identities=8%  Similarity=-0.106  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCeE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDG--LLKVLKLDTVSLT   49 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg--~IklWdi~~~~~~   49 (70)
                      .|.+.+.+++|||||++||+++.||  .|++||+++++..
T Consensus       192 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          192 SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            5667889999999999999999999  8999999988766

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.34  E-value=0.00033  Score=45.55  Aligned_cols=39  Identities=23%  Similarity=0.334  Sum_probs=32.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      ...+.+++|+|+|++|++++.|+.|++||.++.+..-.+
T Consensus       294 ~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          294 DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI  332 (349)
T ss_dssp             SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeee
Confidence            345789999999998888899999999999988755444

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.25  E-value=0.00069  Score=43.78  Aligned_cols=36  Identities=8%  Similarity=0.058  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECC--CCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDD-GLLKVLKLD--TVS   47 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~D-g~IklWdi~--~~~   47 (70)
                      ++...+.+++|+|+|++|++++.+ +.|++|++.  +++
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~   73 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA   73 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc
Confidence            567789999999999988888876 999999997  444

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.13  E-value=0.00034  Score=53.92  Aligned_cols=38  Identities=13%  Similarity=0.146  Sum_probs=32.3

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCC----------cEEEEECCCCC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDG----------LLKVLKLDTVS   47 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg----------~IklWdi~~~~   47 (70)
                      ...|.+.+.+++|||||++||+++.++          .|++||+++++
T Consensus       416 ~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          416 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             ccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            336788899999999999999987754          99999998765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.03  E-value=0.00041  Score=50.57  Aligned_cols=33  Identities=6%  Similarity=0.177  Sum_probs=29.3

Q ss_pred             CeEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCCe
Q psy11104         16 KVNCLAWHQNQGWIAVGGD---------DGLLKVLKLDTVSL   48 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~---------Dg~IklWdi~~~~~   48 (70)
                      .+.+++|||||++||+++.         |+.|++||+++++.
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~  102 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF  102 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence            3889999999999999887         79999999988764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=96.99  E-value=0.0017  Score=43.22  Aligned_cols=39  Identities=10%  Similarity=-0.046  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      .+...+.+++|+|||+.|+.++.|+.|++||+.+++...
T Consensus        78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~  116 (388)
T 3pe7_A           78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV  116 (388)
T ss_dssp             SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence            344445567899999999999999999999999887554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=96.98  E-value=0.0013  Score=45.29  Aligned_cols=34  Identities=12%  Similarity=0.123  Sum_probs=29.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCC--CeEEE
Q psy11104         17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTV--SLTIM   51 (70)
Q Consensus        17 V~~va~spdg~~LasGg~Dg~IklWdi~~~--~~~~~   51 (70)
                      +.+|+|+|||++|++++. ++|.+||.+++  +..-+
T Consensus       307 p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~  342 (361)
T 2oiz_A          307 ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT  342 (361)
T ss_dssp             CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred             eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence            899999999999998887 99999999998  55443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=96.93  E-value=0.0025  Score=46.20  Aligned_cols=39  Identities=13%  Similarity=0.268  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCeEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDG-----LLKVLKLDTVSLTI   50 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg-----~IklWdi~~~~~~~   50 (70)
                      +|...+.+++|+|||++|++++.|+     .|++||+.+++...
T Consensus       255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~  298 (706)
T 2z3z_A          255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR  298 (706)
T ss_dssp             CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE
T ss_pred             CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee
Confidence            4566789999999999999988776     99999999884333

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.93  E-value=0.00051  Score=50.73  Aligned_cols=36  Identities=17%  Similarity=0.233  Sum_probs=30.5

Q ss_pred             CCCCeEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCCe
Q psy11104         13 NNTKVNCLAWHQNQGWIA-----VGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        13 ~~~~V~~va~spdg~~La-----sGg~Dg~IklWdi~~~~~   48 (70)
                      |...+.+++|||||++||     +|+++..|++||+.+++.
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~  159 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW  159 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCC
Confidence            444688999999999999     667778999999998864

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=96.90  E-value=0.002  Score=46.69  Aligned_cols=33  Identities=6%  Similarity=0.012  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCCe
Q psy11104         16 KVNCLAWHQNQGWIAVGGDD---------GLLKVLKLDTVSL   48 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~D---------g~IklWdi~~~~~   48 (70)
                      .|.+++|||||++||+++.|         +.|++||+++++.
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  103 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP  103 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce
Confidence            48999999999999999875         7788999988765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=96.90  E-value=0.002  Score=42.53  Aligned_cols=33  Identities=15%  Similarity=0.219  Sum_probs=28.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGG-DDGLLKVLKLDT   45 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg-~Dg~IklWdi~~   45 (70)
                      +...+.+++|+|||++|++++ .|+.|++|++..
T Consensus        84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~  117 (347)
T 3hfq_A           84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA  117 (347)
T ss_dssp             ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred             CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence            566789999999999888877 789999999964

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=96.87  E-value=0.002  Score=42.55  Aligned_cols=36  Identities=6%  Similarity=0.029  Sum_probs=27.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEC--CCCCe
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGD-DGLLKVLKL--DTVSL   48 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~-Dg~IklWdi--~~~~~   48 (70)
                      +...+.+++|+|||++|++++. ++.|++|++  ++++.
T Consensus       284 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          284 EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            3556889999999998887765 489999954  45543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=96.87  E-value=0.0022  Score=46.67  Aligned_cols=36  Identities=11%  Similarity=0.028  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      .|...+.+++|||||++||.++ ++.|++||+.+++.
T Consensus       149 ~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          149 HGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ  184 (741)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred             cCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE
Confidence            4567899999999999999988 46899999987653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=96.86  E-value=0.0029  Score=40.68  Aligned_cols=38  Identities=8%  Similarity=-0.058  Sum_probs=30.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      +...+.+++|+|||++++++  |+.|++||+++++..-.+
T Consensus       239 ~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~  276 (337)
T 1pby_B          239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred             CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee
Confidence            44567889999999999988  799999999887654443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.85  E-value=0.006  Score=40.56  Aligned_cols=38  Identities=5%  Similarity=0.071  Sum_probs=30.8

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCC
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGG-DDGLLKVLKLDTVS   47 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg-~Dg~IklWdi~~~~   47 (70)
                      ..++...+.+++|+|||++++.++ .++.|++|+++++.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~  244 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM  244 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence            345566789999999999877666 68999999998664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=96.75  E-value=0.005  Score=40.04  Aligned_cols=37  Identities=5%  Similarity=0.081  Sum_probs=30.1

Q ss_pred             CCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCCe
Q psy11104         12 PNNTKVNCLAWHQNQGW-IAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~-LasGg~Dg~IklWdi~~~~~   48 (70)
                      +......+++|+|+|++ ++++..++.|++||+++++.
T Consensus       173 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          173 SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            34566899999999985 56666799999999988776

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.68  E-value=0.0086  Score=38.74  Aligned_cols=38  Identities=13%  Similarity=0.014  Sum_probs=30.5

Q ss_pred             CeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         16 KVNCLAWHQNQGW-IAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        16 ~V~~va~spdg~~-LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      .+.+++|+|+|++ +++++.++.|++||+++++....+.
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            6789999999985 4666789999999999887654443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=96.65  E-value=0.0031  Score=46.85  Aligned_cols=35  Identities=11%  Similarity=0.283  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      .....+++|+|||++++++  ||+|++||+.+++...
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~   50 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSV   50 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEE
Confidence            3456789999999999996  9999999999988643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=96.65  E-value=0.0086  Score=38.89  Aligned_cols=34  Identities=12%  Similarity=-0.132  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCe
Q psy11104         14 NTKVNCLAWHQNQGWIAVG-GDDGLLKVLKLDTVSL   48 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasG-g~Dg~IklWdi~~~~~   48 (70)
                      ...+ +++|+|+|++++.+ ..++.|++||.++++.
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~   74 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP   74 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence            4455 99999999865554 4589999999998876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.60  E-value=0.0085  Score=38.56  Aligned_cols=35  Identities=14%  Similarity=0.228  Sum_probs=27.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCC
Q psy11104         11 IPNNTKVNCLAWHQNQGWIA-VGGDDGLLKVLKLDT   45 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~La-sGg~Dg~IklWdi~~   45 (70)
                      .+....+.+++|+|+|++|+ +++.++.|++|++..
T Consensus       174 ~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          174 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD  209 (343)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            34456789999999999664 555899999999954

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=96.58  E-value=0.0017  Score=47.03  Aligned_cols=20  Identities=10%  Similarity=0.104  Sum_probs=17.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCC
Q psy11104         17 VNCLAWHQNQGWIAVGGDDG   36 (70)
Q Consensus        17 V~~va~spdg~~LasGg~Dg   36 (70)
                      +.+++|||||++||+++.|+
T Consensus       175 ~~~~~~SpDg~~la~~~~~~  194 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAIND  194 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEEC
T ss_pred             cceEEECCCCCEEEEEEECC
Confidence            37899999999999988654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=96.55  E-value=0.0019  Score=46.83  Aligned_cols=32  Identities=13%  Similarity=0.095  Sum_probs=27.4

Q ss_pred             eEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEECCCCCe
Q psy11104         17 VNCLAWHQNQGWIAVGG---------------------------------DDGLLKVLKLDTVSL   48 (70)
Q Consensus        17 V~~va~spdg~~LasGg---------------------------------~Dg~IklWdi~~~~~   48 (70)
                      +.+++|||||++||+++                                 .++.|++||+++++.
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~  247 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT  247 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence            58999999999999998                                 457899999987753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.55  E-value=0.004  Score=40.50  Aligned_cols=41  Identities=12%  Similarity=0.035  Sum_probs=34.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      +...+.+++|+|+|++|+.++.|+.|.+||.++++..-.+.
T Consensus       183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~  223 (353)
T 3vgz_A          183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKK  223 (353)
T ss_dssp             CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEE
Confidence            45568899999999999999999999999998887654443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=96.54  E-value=0.0019  Score=47.04  Aligned_cols=33  Identities=9%  Similarity=0.030  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      ..+.+++|||||+.||.++ |+.|++||+.++..
T Consensus       110 ~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~  142 (719)
T 1z68_A          110 RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP  142 (719)
T ss_dssp             SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred             cccccceECCCCCEEEEEE-CCeEEEEeCCCCCc
Confidence            4688999999999999986 78999999987654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.40  E-value=0.017  Score=37.51  Aligned_cols=41  Identities=2%  Similarity=-0.028  Sum_probs=31.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCeEEEEE
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGG-DDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg-~Dg~IklWdi~~~~~~~~~~   53 (70)
                      +...+.+++|+|+|++++.++ .++.|.+||.++++..-.+.
T Consensus       229 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          229 KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            455688999999998665554 55999999998887654443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=96.32  E-value=0.0098  Score=40.15  Aligned_cols=36  Identities=8%  Similarity=0.131  Sum_probs=29.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCCe
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGG-DDGLLKVLKLD-TVSL   48 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg-~Dg~IklWdi~-~~~~   48 (70)
                      +...+.+++|+|||++|++++ .++.|++||++ +++.
T Consensus       143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~  180 (365)
T 1jof_A          143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV  180 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE
T ss_pred             CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE
Confidence            456799999999999887765 46899999998 5653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.29  E-value=0.0086  Score=43.72  Aligned_cols=41  Identities=5%  Similarity=0.108  Sum_probs=33.7

Q ss_pred             CCCCeEEEEEcC----CCCEEEEEeC-CCcEEEEECCCCCeEEEEE
Q psy11104         13 NNTKVNCLAWHQ----NQGWIAVGGD-DGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        13 ~~~~V~~va~sp----dg~~LasGg~-Dg~IklWdi~~~~~~~~~~   53 (70)
                      +...+..++|||    ||++|++++. |++|++||..+.+..-.+.
T Consensus       220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~  265 (543)
T 1nir_A          220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS  265 (543)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE
T ss_pred             cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeec
Confidence            466789999999    9999999884 8999999998877554443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.27  E-value=0.0042  Score=45.85  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCeE
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDG-----LLKVLKLDTVSLT   49 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg-----~IklWdi~~~~~~   49 (70)
                      ..+.+++|||||++||.+++++     .|++||+.+++..
T Consensus       125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~  164 (710)
T 2xdw_A          125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL  164 (710)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE
T ss_pred             EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC
Confidence            3578999999999999876544     8999999988754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.22  E-value=0.016  Score=38.43  Aligned_cols=31  Identities=6%  Similarity=0.139  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC--CCcEEEEECC
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGD--DGLLKVLKLD   44 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~--Dg~IklWdi~   44 (70)
                      .....+++|+|||++|+.++.  ++.|++|++.
T Consensus       258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             CCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            345689999999998866555  5899999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.16  E-value=0.011  Score=39.06  Aligned_cols=31  Identities=10%  Similarity=-0.095  Sum_probs=27.4

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCeE
Q psy11104         19 CLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus        19 ~va~spdg~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      ++.|+|||+.||.++.++.|++||+.+++..
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~  115 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQ  115 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence            4789999999999999999999999887644

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=96.14  E-value=0.0069  Score=43.62  Aligned_cols=34  Identities=15%  Similarity=0.098  Sum_probs=29.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      +...|.|++|||+|  ++.|..||+|++|+..+...
T Consensus       161 ~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~  194 (388)
T 1xip_A          161 LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM  194 (388)
T ss_dssp             EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEE
T ss_pred             ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccc
Confidence            45689999999999  78899999999998877653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=96.08  E-value=0.0072  Score=44.88  Aligned_cols=35  Identities=9%  Similarity=-0.007  Sum_probs=30.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .+.+.+...+|||||+.||.++ |+.|++|++.++.
T Consensus       109 ~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~  143 (740)
T 4a5s_A          109 RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP  143 (740)
T ss_dssp             CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred             cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCc
Confidence            3567899999999999999985 6899999998765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=96.07  E-value=0.0023  Score=46.01  Aligned_cols=33  Identities=12%  Similarity=0.115  Sum_probs=29.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC----------CcEEEEECCC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDD----------GLLKVLKLDT   45 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~D----------g~IklWdi~~   45 (70)
                      |...+.+++|||||+.||++++|          ..|++||+.+
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence            45678899999999999999887          5899999987

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=95.98  E-value=0.005  Score=45.73  Aligned_cols=37  Identities=14%  Similarity=0.281  Sum_probs=29.8

Q ss_pred             CCCCCeEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCCe
Q psy11104         12 PNNTKVNCLAWHQNQGWIA-----VGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~La-----sGg~Dg~IklWdi~~~~~   48 (70)
                      .+...+.+++|||||++||     +|+++..|++||+++++.
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~  167 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP  167 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC
Confidence            3445688999999999998     455557899999999874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=95.97  E-value=0.02  Score=37.51  Aligned_cols=38  Identities=8%  Similarity=0.130  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      .+...+.+++|+|+|++++++..++.|.+||.++++..
T Consensus        42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~   79 (333)
T 2dg1_A           42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK   79 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred             ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence            34567899999999999999999999999998877643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=95.91  E-value=0.02  Score=41.09  Aligned_cols=36  Identities=14%  Similarity=0.211  Sum_probs=27.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCc--EEEEECCCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGL--LKVLKLDTVS   47 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~--IklWdi~~~~   47 (70)
                      .+...+.+++|+|||+++++++.||.  |.+||.++++
T Consensus       239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~  276 (662)
T 3azo_A          239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA  276 (662)
T ss_dssp             ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred             CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence            45678999999999999999999995  5555554544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=95.86  E-value=0.0066  Score=45.17  Aligned_cols=34  Identities=12%  Similarity=0.075  Sum_probs=28.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCeE
Q psy11104         16 KVNCLAWHQNQGWIAVGGDD-----GLLKVLKLDTVSLT   49 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~D-----g~IklWdi~~~~~~   49 (70)
                      .+.+++|||||++||.++++     ..|++||+++++..
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~  202 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL  202 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC
Confidence            57899999999999987654     36999999998753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=95.86  E-value=0.018  Score=38.77  Aligned_cols=32  Identities=9%  Similarity=0.089  Sum_probs=27.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLD   44 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~-Dg~IklWdi~   44 (70)
                      |...+..++|+|||++|+.+++ ++.|++|+++
T Consensus       191 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  223 (365)
T 1jof_A          191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence            4667999999999999887775 7899999875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=95.73  E-value=0.0094  Score=39.56  Aligned_cols=29  Identities=24%  Similarity=0.393  Sum_probs=23.8

Q ss_pred             EEEcCCCCEEEEEeC-CCc--EEEEECCCCCe
Q psy11104         20 LAWHQNQGWIAVGGD-DGL--LKVLKLDTVSL   48 (70)
Q Consensus        20 va~spdg~~LasGg~-Dg~--IklWdi~~~~~   48 (70)
                      .+|||||++||.++. ||.  |.+||+++++.
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~   72 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA   72 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce
Confidence            789999999999988 774  77788877653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.57  E-value=0.013  Score=38.65  Aligned_cols=34  Identities=9%  Similarity=-0.009  Sum_probs=26.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCeE
Q psy11104         16 KVNCLAWHQNQGWIAVGGDD-----GLLKVLKLDTVSLT   49 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~D-----g~IklWdi~~~~~~   49 (70)
                      .+..++|+|||++|+.++.+     +.|++||+++++..
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~  277 (396)
T 3c5m_A          239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE  277 (396)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE
T ss_pred             cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE
Confidence            47889999999988877654     45999999887643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=95.57  E-value=0.026  Score=36.22  Aligned_cols=29  Identities=10%  Similarity=0.043  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      .+.+++++|+|+++++ +.|+.|++|++..
T Consensus       252 ~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          252 QCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             CEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             cceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            4789999999998888 5799999999754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=95.44  E-value=0.052  Score=36.18  Aligned_cols=36  Identities=11%  Similarity=0.190  Sum_probs=30.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCCeE
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDD------------------------GLLKVLKLDTVSLT   49 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~D------------------------g~IklWdi~~~~~~   49 (70)
                      -+.+.+|+++|+|+++++.+.+                        +.|.+||..+++..
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~   82 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL   82 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE
Confidence            3579999999999999998888                        57999998877653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=95.44  E-value=0.051  Score=40.39  Aligned_cols=40  Identities=18%  Similarity=0.164  Sum_probs=32.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCCeEEEEE
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD--TVSLTIMII   53 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~--~~~~~~~~~   53 (70)
                      ...+.++.|+|||+++.+++.|+.|.+||+.  +.+....+.
T Consensus       196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~  237 (567)
T 1qks_A          196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK  237 (567)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred             CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence            4467899999999999999999999999995  665544443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=95.37  E-value=0.042  Score=35.92  Aligned_cols=32  Identities=9%  Similarity=0.327  Sum_probs=26.7

Q ss_pred             eEEEEEcCCCCEEEEEeCC---------------------------CcEEEEECCCCCe
Q psy11104         17 VNCLAWHQNQGWIAVGGDD---------------------------GLLKVLKLDTVSL   48 (70)
Q Consensus        17 V~~va~spdg~~LasGg~D---------------------------g~IklWdi~~~~~   48 (70)
                      +.+++|+|||+.|+.++.+                           ..|.+||+.+++.
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~  164 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV  164 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence            8899999999999888743                           5789999988765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=95.37  E-value=0.042  Score=35.58  Aligned_cols=37  Identities=11%  Similarity=-0.061  Sum_probs=31.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeE
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      +...+.+++++|+|+++++.+.++.|.+||.++++..
T Consensus        67 ~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           67 PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred             CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence            4567899999999999998888899999999777643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=95.02  E-value=0.056  Score=34.98  Aligned_cols=32  Identities=19%  Similarity=0.198  Sum_probs=28.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~   44 (70)
                      +....++++|+|+|+.|++.+.++.|++|++.
T Consensus       170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             CCCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence            44567899999999988888889999999987

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=94.88  E-value=0.097  Score=36.45  Aligned_cols=38  Identities=11%  Similarity=0.093  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCCC-EEEEEe-CCCcEEEEECCCCCeEEE
Q psy11104         14 NTKVNCLAWHQNQG-WIAVGG-DDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        14 ~~~V~~va~spdg~-~LasGg-~Dg~IklWdi~~~~~~~~   51 (70)
                      .....+++|+|||+ ++.++. .++.|.++|.++.+...+
T Consensus       317 g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          317 GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            34578999999998 777776 599999999999887765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=94.84  E-value=0.092  Score=34.23  Aligned_cols=38  Identities=11%  Similarity=0.075  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCCeE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDD----GLLKVLKLDTVSLT   49 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~D----g~IklWdi~~~~~~   49 (70)
                      .+...+.+++|+|+|++++++..+    +.|.+||.+++...
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~  125 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  125 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence            345679999999999999888777    78999998876643

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=94.72  E-value=0.033  Score=37.15  Aligned_cols=34  Identities=3%  Similarity=-0.110  Sum_probs=29.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      .+...+.+|+++|+|.++++...++.|++|++..
T Consensus       289 ~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          289 KHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             SCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             CccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            4556789999999999999999999999999754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=94.62  E-value=0.12  Score=33.07  Aligned_cols=34  Identities=6%  Similarity=-0.088  Sum_probs=28.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT   45 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~   45 (70)
                      .+...+++++++|+|+++++.+.++.|++||...
T Consensus       118 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g  151 (286)
T 1q7f_A          118 TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG  151 (286)
T ss_dssp             TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred             ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC
Confidence            4456789999999999999988899999999643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=94.37  E-value=0.058  Score=36.91  Aligned_cols=37  Identities=3%  Similarity=-0.014  Sum_probs=29.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCeEEE
Q psy11104         15 TKVNCLAWHQNQGWIAVGGD--DGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~--Dg~IklWdi~~~~~~~~   51 (70)
                      .....++++|||++|.+++.  +++|.+||+++++..-.
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            45678999999999888763  68999999998865433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=94.37  E-value=0.089  Score=37.78  Aligned_cols=40  Identities=18%  Similarity=0.161  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      ++.+ |..|+|  |+.+|+.| .||.|++||+++-.+.-....+
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~  125 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSF  125 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEEC
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcccee
Confidence            4556 999999  99999998 8899999998877655444333

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=94.07  E-value=0.056  Score=39.80  Aligned_cols=31  Identities=19%  Similarity=0.259  Sum_probs=27.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCC
Q psy11104         17 VNCLAWHQNQGWIAVGGDDGL----------------LKVLKLDTVS   47 (70)
Q Consensus        17 V~~va~spdg~~LasGg~Dg~----------------IklWdi~~~~   47 (70)
                      +.+++|+|||+.|+.++.|+.                |++|++.++.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~  219 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ  219 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCc
Confidence            567999999999999988876                9999998765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=94.05  E-value=0.065  Score=34.96  Aligned_cols=33  Identities=6%  Similarity=-0.107  Sum_probs=27.0

Q ss_pred             CCCCCeEE-EEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         12 PNNTKVNC-LAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        12 ~~~~~V~~-va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .+...+.. ++|+ || ++++++.||.++|| +.+++
T Consensus       260 ~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~  293 (347)
T 2gop_A          260 EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE  293 (347)
T ss_dssp             TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS
T ss_pred             cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc
Confidence            44567776 9999 98 99999999999999 87443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=93.53  E-value=0.07  Score=39.29  Aligned_cols=30  Identities=10%  Similarity=-0.016  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCC
Q psy11104         18 NCLAWHQNQGWIAVGGDDGL-------------LKVLKLDTVS   47 (70)
Q Consensus        18 ~~va~spdg~~LasGg~Dg~-------------IklWdi~~~~   47 (70)
                      .+++|+|||+.|+.++.|+.             |++|++.++.
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~  213 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP  213 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCc
Confidence            68999999999999999887             9999998776

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=93.24  E-value=0.12  Score=32.41  Aligned_cols=32  Identities=6%  Similarity=-0.085  Sum_probs=28.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      ..+.+++++|+|+++++.+.++.|++++....
T Consensus       234 ~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          234 NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            56899999999999999999999999997654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.81  E-value=0.32  Score=38.32  Aligned_cols=40  Identities=23%  Similarity=0.145  Sum_probs=34.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ..+.+++..++..++.+-+.|+++|+|++.++.+..+...
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            3578888888999999999999999999999987776544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=92.40  E-value=0.18  Score=32.28  Aligned_cols=34  Identities=18%  Similarity=0.215  Sum_probs=28.5

Q ss_pred             CCeEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCCe
Q psy11104         15 TKVNCLAWHQNQGWIAV-------GGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        15 ~~V~~va~spdg~~Las-------Gg~Dg~IklWdi~~~~~   48 (70)
                      ....+++|+++|.++++       ++.++.|..||..+++.
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~   58 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK   58 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE
Confidence            45689999999999888       67889999999877664

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=91.93  E-value=0.29  Score=36.37  Aligned_cols=31  Identities=10%  Similarity=0.332  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q psy11104         16 KVNCLAWHQNQGWIAVGGDDG-----LLKVLKLDTV   46 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~Dg-----~IklWdi~~~   46 (70)
                      .+.+++|||||++|+..+.++     .|++||+.++
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence            588999999999988877554     8999998776

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=91.91  E-value=0.26  Score=34.84  Aligned_cols=38  Identities=5%  Similarity=-0.045  Sum_probs=30.9

Q ss_pred             CeEEEEEcCCCC-EEEEEe-CCCcEEEEECCCCCeEEEEE
Q psy11104         16 KVNCLAWHQNQG-WIAVGG-DDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        16 ~V~~va~spdg~-~LasGg-~Dg~IklWdi~~~~~~~~~~   53 (70)
                      ...+++|+|||+ ++++.. .+++|.++|.++.+..-++.
T Consensus       315 ~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence            578999999987 567777 69999999999987665443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.90  E-value=0.4  Score=38.21  Aligned_cols=39  Identities=23%  Similarity=0.145  Sum_probs=33.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .+.+++..++..++.+=+.|+++|+|++.++.+..+...
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL  277 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  277 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence            556777788889999999999999999999987776554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=91.56  E-value=0.47  Score=30.27  Aligned_cols=33  Identities=6%  Similarity=0.143  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ..+..++++++|.++++...++.|.+||.++++
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~  258 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ  258 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc
Confidence            557899999999999998889999999987554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=91.32  E-value=0.78  Score=30.57  Aligned_cols=39  Identities=0%  Similarity=-0.103  Sum_probs=29.0

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      .|..+.....+.++|+|++++|..+..  .|.+||.++++.
T Consensus       218 ~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          218 QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred             EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence            344444457899999999888777654  899999887653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=91.24  E-value=0.64  Score=31.01  Aligned_cols=41  Identities=12%  Similarity=-0.029  Sum_probs=32.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      .......++++|++++.++...++.|.+||.++.+..-.+.
T Consensus        82 ~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           82 GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            35678999999999777776689999999999887554443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=91.19  E-value=0.43  Score=34.31  Aligned_cols=41  Identities=10%  Similarity=0.131  Sum_probs=31.5

Q ss_pred             CCeEEEEEcCCCC-EE-EEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         15 TKVNCLAWHQNQG-WI-AVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        15 ~~V~~va~spdg~-~L-asGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      ..+++|+++||++ +| ++...++.|.++|..+++..-++...
T Consensus       331 ~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~  373 (386)
T 3sjl_D          331 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  373 (386)
T ss_dssp             EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence            3678999999986 54 44567999999999998866555443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=91.11  E-value=0.65  Score=30.30  Aligned_cols=38  Identities=8%  Similarity=-0.097  Sum_probs=31.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      +....+++.++|++.++...++.|..||.++++..-.+
T Consensus       199 ~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i  236 (297)
T 3g4e_A          199 QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV  236 (297)
T ss_dssp             CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred             CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence            46789999999999999888899999999877654443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=91.09  E-value=0.59  Score=29.19  Aligned_cols=33  Identities=9%  Similarity=-0.050  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ..+.+|+++++|.++++...++.|.+|+..+..
T Consensus       192 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             CSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             CCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence            568899999999999988889999999986654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=90.83  E-value=1.5  Score=29.94  Aligned_cols=46  Identities=11%  Similarity=0.078  Sum_probs=33.2

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCeEEEEE
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGD--DGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~--Dg~IklWdi~~~~~~~~~~   53 (70)
                      .|..+.......++|+||+.+.++.|.  +++|++.|.++++..-.+.
T Consensus        14 ~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~   61 (266)
T 2iwa_A           14 EFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK   61 (266)
T ss_dssp             EEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe
Confidence            343333345689999999877777664  6799999999998665544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=90.73  E-value=0.67  Score=32.42  Aligned_cols=35  Identities=20%  Similarity=0.183  Sum_probs=30.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeE
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      ....+|+|+|+|+++++...++.|+.||.+++...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~  165 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT  165 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE
Confidence            35789999999999999888999999999876544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=89.71  E-value=0.94  Score=32.74  Aligned_cols=37  Identities=8%  Similarity=0.050  Sum_probs=31.4

Q ss_pred             CeEEEEEcCCCC-EEEEEe-CCCcEEEEECCCCCeEEEE
Q psy11104         16 KVNCLAWHQNQG-WIAVGG-DDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        16 ~V~~va~spdg~-~LasGg-~Dg~IklWdi~~~~~~~~~   52 (70)
                      ...+|+|+|||+ ++.+.. .++.|.++|.++.+..-++
T Consensus       371 ~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          371 EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            478999999998 777777 6999999999999877654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=89.60  E-value=1.1  Score=28.12  Aligned_cols=32  Identities=9%  Similarity=0.110  Sum_probs=27.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~   44 (70)
                      +...+.+++++|+|.++++...++.|..||..
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~   44 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD   44 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC
Confidence            34679999999999998887778999999977

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=89.54  E-value=0.38  Score=31.85  Aligned_cols=31  Identities=16%  Similarity=0.088  Sum_probs=25.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         25 NQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        25 dg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      .+++|++++.|+.|.+||.++++..-.+...
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~   34 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLE   34 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCC
Confidence            3689999999999999999899877665543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=88.61  E-value=1.1  Score=31.59  Aligned_cols=37  Identities=14%  Similarity=-0.055  Sum_probs=30.6

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEECCCCCeEEEEEec
Q psy11104         19 CLAWHQNQGWIAVGG----------DDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        19 ~va~spdg~~LasGg----------~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      .++++|||+++..+.          .|++|.+||..+.+..-++...
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~  115 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP  115 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence            799999998877765          4789999999999987776553

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=88.53  E-value=1.7  Score=28.99  Aligned_cols=39  Identities=10%  Similarity=-0.138  Sum_probs=30.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCCeEEE
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGD-----DGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~-----Dg~IklWdi~~~~~~~~   51 (70)
                      +-..+.+|+++|+|+++++-..     ++.|.+||+++++..-.
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~  108 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRV  108 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEE
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEE
Confidence            4467999999999988776544     68899999988764433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=88.05  E-value=1.3  Score=31.72  Aligned_cols=37  Identities=8%  Similarity=-0.050  Sum_probs=29.4

Q ss_pred             CeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCeEEEE
Q psy11104         16 KVNCLAWHQNQGWIAVGGD--DGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~--Dg~IklWdi~~~~~~~~~   52 (70)
                      ....++|+|||+++..+..  ++.|.++|+++.+..-++
T Consensus       138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI  176 (386)
T 3sjl_D          138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML  176 (386)
T ss_dssp             CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            4556899999998777653  689999999998865554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=87.81  E-value=1.7  Score=28.28  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=26.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      ...+.+++++|+|+++++.  ++.|.+||.++++.
T Consensus        53 ~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           53 DAPVSSVALRQSGGYVATI--GTKFCALNWKEQSA   85 (297)
T ss_dssp             SSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEE
T ss_pred             CCceEEEEECCCCCEEEEE--CCeEEEEECCCCcE
Confidence            4678999999999977664  56799999887654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=87.80  E-value=1.9  Score=26.85  Aligned_cols=32  Identities=13%  Similarity=0.133  Sum_probs=27.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~   44 (70)
                      +...+.+++++++|.++++...++.|..||.+
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            34678999999999999988888999999876

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=87.71  E-value=0.94  Score=29.57  Aligned_cols=32  Identities=13%  Similarity=0.082  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCC------CcEEEEECCCCC
Q psy11104         16 KVNCLAWHQNQGWIAVGGDD------GLLKVLKLDTVS   47 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~D------g~IklWdi~~~~   47 (70)
                      ..+.++|+||++.|..+..+      +.|+.|++..+.
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA  226 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence            45789999999977666554      789999987654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=87.05  E-value=1.5  Score=32.71  Aligned_cols=38  Identities=13%  Similarity=0.255  Sum_probs=30.6

Q ss_pred             CCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCC-CCeEE
Q psy11104         13 NNTKVNCLAWHQN---QGWIAVGGDDGLLKVLKLDT-VSLTI   50 (70)
Q Consensus        13 ~~~~V~~va~spd---g~~LasGg~Dg~IklWdi~~-~~~~~   50 (70)
                      ...+|..+-|||-   +..|+.=.+|+.||+||+.. .+.+.
T Consensus       123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~  164 (452)
T 3pbp_A          123 PKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI  164 (452)
T ss_dssp             CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE
T ss_pred             CCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc
Confidence            3678999999996   45788889999999999975 33444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=86.63  E-value=2  Score=27.89  Aligned_cols=32  Identities=13%  Similarity=-0.013  Sum_probs=27.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~   44 (70)
                      +...+++++++|+|+++++...++.|.+|+.+
T Consensus        84 ~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           84 ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             SCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            35568999999999988887777889999976

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=86.28  E-value=0.53  Score=35.52  Aligned_cols=31  Identities=10%  Similarity=0.013  Sum_probs=24.4

Q ss_pred             CeEEEEEc-CCCCEEEEEeC-----CCcEEEEECCCC
Q psy11104         16 KVNCLAWH-QNQGWIAVGGD-----DGLLKVLKLDTV   46 (70)
Q Consensus        16 ~V~~va~s-pdg~~LasGg~-----Dg~IklWdi~~~   46 (70)
                      .+...+|| |||++||-+.+     ...|+++|+.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g  211 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDP  211 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCC
Confidence            57789999 99999885432     235999999988

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=86.23  E-value=1.1  Score=29.91  Aligned_cols=34  Identities=3%  Similarity=0.010  Sum_probs=28.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      .+....++++++|.++++...++.|.+||.++++
T Consensus       247 ~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          247 KPICDGISIDKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             CCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence            3456789999999999999999999999985554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=86.13  E-value=1  Score=29.68  Aligned_cols=38  Identities=5%  Similarity=-0.001  Sum_probs=30.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ....++..++|+++++.+.++.|..||.+ ++..-.+..
T Consensus       126 ~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~  163 (276)
T 3no2_A          126 QFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL  163 (276)
T ss_dssp             SCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC
T ss_pred             cccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC
Confidence            34566788999999999999999999987 776555443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=86.02  E-value=1.8  Score=29.88  Aligned_cols=34  Identities=9%  Similarity=-0.268  Sum_probs=27.3

Q ss_pred             eEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCeEEE
Q psy11104         17 VNCLAWHQNQGWIAVGGD--DGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        17 V~~va~spdg~~LasGg~--Dg~IklWdi~~~~~~~~   51 (70)
                      ...++|+|||++|..++.  ++.|.++| ++++..-.
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~  162 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ  162 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence            457899999999888764  57899999 88876544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=85.82  E-value=2.4  Score=29.49  Aligned_cols=33  Identities=15%  Similarity=0.186  Sum_probs=28.6

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCe
Q psy11104         16 KVNCLAWHQNQGWIAVGG-DDGLLKVLKLDTVSL   48 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg-~Dg~IklWdi~~~~~   48 (70)
                      ....++++|+|+++++-+ .++.|+.|+..++..
T Consensus       324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             SEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             CCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            478999999999999988 899999999876653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=85.77  E-value=2.8  Score=28.82  Aligned_cols=42  Identities=19%  Similarity=0.308  Sum_probs=33.3

Q ss_pred             CCCCC--eEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCeEEEEEe
Q psy11104         12 PNNTK--VNCLAWHQNQGWIAVGGDDG--LLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        12 ~~~~~--V~~va~spdg~~LasGg~Dg--~IklWdi~~~~~~~~~~~   54 (70)
                      ||...  ...+.|+ ++.+..|.|.+|  .|+..|+++++..-++..
T Consensus        38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l   83 (262)
T 3nol_A           38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL   83 (262)
T ss_dssp             ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC
T ss_pred             cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec
Confidence            55544  4899998 788889999887  999999999987665543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=85.15  E-value=2.6  Score=31.17  Aligned_cols=41  Identities=7%  Similarity=-0.007  Sum_probs=31.2

Q ss_pred             CCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCCeEEEEEe
Q psy11104         14 NTKVNCLAWHQNQGWIAV-GGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        14 ~~~V~~va~spdg~~Las-Gg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .....++.|+|+|+++.. ...++.|.++|.++++..-.+..
T Consensus       341 ~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          341 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence            445678899999998654 45788999999999876555444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=83.48  E-value=3.6  Score=25.60  Aligned_cols=31  Identities=3%  Similarity=-0.064  Sum_probs=27.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~   44 (70)
                      ...+.+++++++|.++++...++.|.++|..
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~   49 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS   49 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC
Confidence            4578999999999999988888999999977

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=83.12  E-value=2.9  Score=32.86  Aligned_cols=38  Identities=16%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ..|.|+.+  +..++++=+.|.++|+|+++++........
T Consensus       222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            34666655  478999999999999999999987776665

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=82.70  E-value=1.3  Score=33.28  Aligned_cols=35  Identities=14%  Similarity=-0.018  Sum_probs=28.2

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         20 LAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        20 va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      -.+...+.+++.|+.||.++.||.+++++.-.+..
T Consensus       480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence            35556788999999999999999999987655443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=82.06  E-value=1.5  Score=32.93  Aligned_cols=39  Identities=15%  Similarity=-0.058  Sum_probs=30.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        16 ~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ++++..+.+++.+++.|+.||.+++||.++++..-.+..
T Consensus       478 ~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          478 PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence            344445666788889999999999999999987766554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=81.97  E-value=4.3  Score=26.52  Aligned_cols=33  Identities=18%  Similarity=0.104  Sum_probs=27.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      .....+++|+|+|+++++-..++.|..+|.++.
T Consensus        31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~   63 (306)
T 2p4o_A           31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN   63 (306)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC
T ss_pred             CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc
Confidence            466889999999998888778899998887654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=81.85  E-value=4.5  Score=25.12  Aligned_cols=31  Identities=16%  Similarity=0.107  Sum_probs=27.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD   44 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~   44 (70)
                      ...+.+++++++|.++++...++.|..+|.+
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence            3678999999999998888778999999977

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=80.59  E-value=3.6  Score=28.04  Aligned_cols=30  Identities=20%  Similarity=0.129  Sum_probs=24.4

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         25 NQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        25 dg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ++..+++|+.||.|+.||.++++..-....
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~   37 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE   37 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC
Confidence            578899999999999999999887655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	70
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.004

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.6 bits (80), Expect = 2e-04
 Identities = 6/38 (15%), Positives = 19/38 (50%)

Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL 54
          ++C AW++++  IA+  ++  + + +        +  L
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL 47

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.4 bits (77), Expect = 3e-04
 Identities = 6/41 (14%), Positives = 17/41 (41%)

Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE 57
          ++ +    ++  + +   DG L V K D  +  + ++    
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR 54

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (77), Expect = 4e-04
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
          V  + +H     +    +D  +KV   +T
Sbjct: 20 VTRVIFHPVFSVMVSASEDATIKVWDYET 48

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.6 bits (75), Expect = 7e-04
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKV 40
           V  L +H+   ++  G  D  +KV
Sbjct: 292 VTSLDFHKTAPYVVTGSVDQTVKV 315

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.2 bits (74), Expect = 0.001
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 17  VNCLAWHQNQGWIAVGGDDGLLKV 40
           V+CL    +   +A G  D  LK+
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKI 338

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (74), Expect = 0.001
 Identities = 5/33 (15%), Positives = 11/33 (33%)

Query: 11  IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKL 43
              ++ V       +  +I  G  D    V ++
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 32.6 bits (72), Expect = 0.002
 Identities = 3/29 (10%), Positives = 10/29 (34%)

Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
          +  L+   +   +     +G +    + T
Sbjct: 15 ITALSSSADGKTLFSADAEGHINSWDIST 43

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 31.7 bits (70), Expect = 0.004
 Identities = 7/33 (21%), Positives = 12/33 (36%)

Query: 13  NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
           +   V  +A  QN  +I  G  D  +      +
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.34
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.32
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.26
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.24
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.18
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.08
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.02
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.01
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.01
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.91
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.9
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.89
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	98.83
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.78
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.78
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.78
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.74
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	98.73
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	98.7
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.66
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.62
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	98.55
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.53
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.52
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.46
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.43
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.4
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.38
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.37
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	98.37
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.35
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.33
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.31
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.17
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.11
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.08
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.04
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.99
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.9
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.36
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.24
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.18
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	96.98
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	96.94
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.76
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.63
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	95.55
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	93.39
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	92.19
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	92.16
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	92.14
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	88.85
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	88.73
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	88.56
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	87.23
d1c8ua2	171	Thioesterase II (TesB) {Escherichia coli [TaxId: 5	83.88

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.34  E-value=2e-12  Score=81.87  Aligned_cols=49  Identities=16%  Similarity=0.224  Sum_probs=42.3

Q ss_pred             eeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104          7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus         7 ~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      ++.-.+|.+.|+||+|+|++++|||||.||+|+|||+.+++....+..+
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~   96 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR   96 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECS
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecc
Confidence            4445689999999999999999999999999999999998876665544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=1.5e-12  Score=80.73  Aligned_cols=45  Identities=13%  Similarity=0.141  Sum_probs=39.7

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        10 ~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      -.+|.+.|++|+|+|++++|||||+||+|||||+++++....+..
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~   57 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG   57 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeC
Confidence            347999999999999999999999999999999998876665543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.26  E-value=4.6e-12  Score=80.66  Aligned_cols=46  Identities=9%  Similarity=0.112  Sum_probs=40.9

Q ss_pred             eeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104          6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus         6 ~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      ..++..+|.+.|+||+|+|||++|||||.||+|++||+++++..-.
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~   49 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV   49 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            3567889999999999999999999999999999999988775543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=2.6e-12  Score=80.16  Aligned_cols=44  Identities=16%  Similarity=0.206  Sum_probs=38.5

Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104          9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus         9 I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      |..+|.+.|++|+|+|++++||+||.||+|||||+++......+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~   49 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL   49 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEE
Confidence            56799999999999999999999999999999999776654443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=2.4e-11  Score=81.46  Aligned_cols=44  Identities=16%  Similarity=0.230  Sum_probs=39.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      +|.+.|++|+|+|||++|||||.||+|||||++++++...+..+
T Consensus       287 gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH  330 (393)
T d1sq9a_         287 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH  330 (393)
T ss_dssp             SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             cccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCc
Confidence            69999999999999999999999999999999999877666544

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=9.3e-11  Score=72.93  Aligned_cols=41  Identities=17%  Similarity=0.289  Sum_probs=35.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      .|...|++|+|+|++++|||||+||+|++||+++.+....+
T Consensus       249 ~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             cccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence            46678999999999999999999999999999988765543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1e-10  Score=73.14  Aligned_cols=47  Identities=23%  Similarity=0.182  Sum_probs=37.4

Q ss_pred             eeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104          6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus         6 ~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      ..++-++|.+.|.+ +++++|++|||||.||+|||||+++++....+.
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~   54 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV   54 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECC
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEe
Confidence            34556699999865 466689999999999999999999887655443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=2.3e-10  Score=74.33  Aligned_cols=41  Identities=17%  Similarity=0.355  Sum_probs=36.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      .|.+.|+||+|||||++||+|+ ||+|+|||+.+++....+.
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~  100 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLS  100 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEEC
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeec
Confidence            6999999999999999999987 8999999999887665543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.01  E-value=4.3e-10  Score=74.11  Aligned_cols=44  Identities=9%  Similarity=0.114  Sum_probs=38.6

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      ++..+|...|.|++|+|+|++||+|+.||+|+|||+.++.....
T Consensus        52 ~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~   95 (311)
T d1nr0a1          52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK   95 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred             EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence            44567999999999999999999999999999999988875543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.91  E-value=1.9e-09  Score=71.49  Aligned_cols=42  Identities=19%  Similarity=0.251  Sum_probs=36.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      .+|.+.|++|+|+|++++|||||.||+|+|||++++......
T Consensus        48 ~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~   89 (371)
T d1k8kc_          48 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL   89 (371)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccc
Confidence            479999999999999999999999999999999877654433

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=1.1e-09  Score=67.46  Aligned_cols=53  Identities=13%  Similarity=0.110  Sum_probs=43.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKL   64 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~   64 (70)
                      .|...|.+++|+|++++||+|+.||.|++||+++++....+..+.....+.+|
T Consensus       245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~  297 (317)
T d1vyhc1         245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF  297 (317)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            68899999999999999999999999999999998876666554444444444

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.1e-09  Score=65.70  Aligned_cols=43  Identities=19%  Similarity=0.287  Sum_probs=35.2

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      ..|...|+|++|  ||++|||||.||+|||||+++++....+..+
T Consensus        12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H   54 (293)
T d1p22a2          12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGH   54 (293)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCC
T ss_pred             CCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecC
Confidence            367788998765  7999999999999999999988776655443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.89  E-value=2.2e-09  Score=70.65  Aligned_cols=43  Identities=21%  Similarity=0.314  Sum_probs=37.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .|.+.|.+++|+|++++|++||.||+|+|||+++++..-.+..
T Consensus       236 ~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~  278 (311)
T d1nr0a1         236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV  278 (311)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             cccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEEC
Confidence            5788999999999999999999999999999998876555443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=2.4e-09  Score=67.07  Aligned_cols=52  Identities=17%  Similarity=0.282  Sum_probs=38.6

Q ss_pred             cCCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccC
Q psy11104         11 IPNNTKV-NCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKL   64 (70)
Q Consensus        11 ~~~~~~V-~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~   64 (70)
                      .+|.+.| .|++|  ++++|||||.||+|+|||+++++....+..+.....+.+|
T Consensus         9 ~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~   61 (355)
T d1nexb2           9 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY   61 (355)
T ss_dssp             ECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             CCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEE
Confidence            4788875 56665  6889999999999999999998877666554433334333

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.78  E-value=5.3e-09  Score=66.07  Aligned_cols=38  Identities=24%  Similarity=0.410  Sum_probs=34.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeE
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT   49 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~   49 (70)
                      .|...|++++|+|++++||+|+.||.|++||+++....
T Consensus       222 ~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         222 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred             ccccccccccccccccceEEEcCCCEEEEEECCCCCcc
Confidence            57889999999999999999999999999999876543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=6.3e-09  Score=67.39  Aligned_cols=47  Identities=19%  Similarity=0.149  Sum_probs=40.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEeccc
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE   57 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~   57 (70)
                      ..|...|.+++|+|+|++|++|+.||+|++||+++++....+..+..
T Consensus       305 ~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~  351 (388)
T d1erja_         305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN  351 (388)
T ss_dssp             ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             ccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC
Confidence            35788999999999999999999999999999999988776655433

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.78  E-value=9.2e-09  Score=64.57  Aligned_cols=54  Identities=9%  Similarity=-0.030  Sum_probs=42.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEecccccccccCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLP   65 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~~~~~~~~~~~   65 (70)
                      .+...|.+++|+|++++|++|+.||.|++||+.+++....+..+.....+.+|-
T Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s  321 (340)
T d1tbga_         268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT  321 (340)
T ss_dssp             TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEe
Confidence            456789999999999999999999999999999988776665544444444443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2e-08  Score=65.35  Aligned_cols=40  Identities=15%  Similarity=0.251  Sum_probs=34.1

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      ..|.+.|.+++|+|||++||+|+.||+|++||+......+
T Consensus        94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~  133 (337)
T d1gxra_          94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI  133 (337)
T ss_dssp             SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccc
Confidence            3678899999999999999999999999999998665443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=1.2e-08  Score=68.00  Aligned_cols=43  Identities=9%  Similarity=0.166  Sum_probs=37.2

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEECCCCCeEEEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGL---LKVLKLDTVSLTIMII   53 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~---IklWdi~~~~~~~~~~   53 (70)
                      .+|...|++|+|+|||++||+||+|++   |++||++++...-.+.
T Consensus       228 ~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~  273 (393)
T d1sq9a_         228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS  273 (393)
T ss_dssp             -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred             ccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeec
Confidence            468999999999999999999999985   9999999987666553

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=1.4e-08  Score=63.88  Aligned_cols=44  Identities=16%  Similarity=0.276  Sum_probs=37.9

Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104          8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus         8 ~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      ++..+|.+.+.+++|+|++.+||+|+.||.|++||+.++.....
T Consensus       156 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~  199 (287)
T d1pgua2         156 DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS  199 (287)
T ss_dssp             ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred             eeeeccCCceeEEEeccCccccccccccccccceeecccccccc
Confidence            34457889999999999999999999999999999988765443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.4e-08  Score=63.68  Aligned_cols=41  Identities=17%  Similarity=0.206  Sum_probs=37.1

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      ..|.+.|++++|+|+|++|++|+.||.|++||+.+++....
T Consensus       262 ~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~  302 (337)
T d1gxra_         262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            46889999999999999999999999999999998876654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.62  E-value=6e-08  Score=64.06  Aligned_cols=42  Identities=26%  Similarity=0.356  Sum_probs=36.7

Q ss_pred             eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104          5 LSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus         5 ~~~~I~~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      ....+..+|.+.|.+++|+|++++||+|+.||+|++||....
T Consensus       132 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~  173 (371)
T d1k8kc_         132 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  173 (371)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             cccccccccccccccccccccccceeccccCcEEEEEeeccC
Confidence            345566789999999999999999999999999999997654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=6.4e-08  Score=60.78  Aligned_cols=43  Identities=16%  Similarity=0.313  Sum_probs=35.4

Q ss_pred             cCCCCCeEEEEEcCC----------CCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         11 IPNNTKVNCLAWHQN----------QGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        11 ~~~~~~V~~va~spd----------g~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      ..|.+.|.+++|+|+          +.+|||||.||+|++||++.....+...
T Consensus       202 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~  254 (287)
T d1pgua2         202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL  254 (287)
T ss_dssp             CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred             cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe
Confidence            468899999999975          4689999999999999998766555443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.53  E-value=2.9e-08  Score=63.03  Aligned_cols=39  Identities=15%  Similarity=0.158  Sum_probs=34.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEE
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIM   51 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~   51 (70)
                      |.+.|.+++|||||++|++++.||.|++||++++....+
T Consensus       313 ~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~  351 (360)
T d1k32a3         313 VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT  351 (360)
T ss_dssp             EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEE
T ss_pred             ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence            445689999999999999999999999999988876543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=1.2e-07  Score=61.77  Aligned_cols=42  Identities=10%  Similarity=0.125  Sum_probs=36.8

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        12 ~~~~~V~~va~spd-g~~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      .|...|.+++|+|+ +.+||+|+.||.|++||+++++....+.
T Consensus       203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~  245 (325)
T d1pgua1         203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE  245 (325)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC
T ss_pred             CCCCccEEeeeccccceeccccccccceeeeeecccccccccc
Confidence            57788999999998 7899999999999999999888665544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=8.8e-08  Score=62.51  Aligned_cols=34  Identities=12%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCC
Q psy11104         14 NTKVNCLAWHQ--NQGWIAVGGDDGLLKVLKLDTVS   47 (70)
Q Consensus        14 ~~~V~~va~sp--dg~~LasGg~Dg~IklWdi~~~~   47 (70)
                      ...|++++|+|  +|++||||+.||+|+|||+..+.
T Consensus        63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            56899999998  47899999999999999986543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.43  E-value=3.1e-07  Score=57.46  Aligned_cols=43  Identities=14%  Similarity=0.044  Sum_probs=37.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      +...+.+++|+|||++|++|+.||+|++||.++.+..-.+...
T Consensus       278 ~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence            4567899999999999999999999999999998877766553

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.40  E-value=5.3e-07  Score=60.82  Aligned_cols=37  Identities=16%  Similarity=0.133  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEE
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI   50 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~   50 (70)
                      ...+.+|+|||||++|++++.||+|++||+.+++...
T Consensus        61 g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~   97 (426)
T d1hzua2          61 GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK   97 (426)
T ss_dssp             CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred             CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE
Confidence            4569999999999999999999999999999887443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.38  E-value=7.2e-07  Score=56.36  Aligned_cols=44  Identities=18%  Similarity=0.107  Sum_probs=38.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      +|.+.|.+++|+|||++|++++.|+.+++|+..++.....+..+
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR  126 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCceEEeeeecccccccceeccccccccccccccceeeeeecc
Confidence            68889999999999999999999999999999988876655443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.37  E-value=2.6e-07  Score=58.01  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=36.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      +...+.+++|||||++|++|+.||.|++||.++.+..-++..
T Consensus       290 ~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            345789999999999999999999999999999887665544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=4.8e-07  Score=56.25  Aligned_cols=41  Identities=17%  Similarity=0.262  Sum_probs=34.8

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      ..|.+.|++|+|+|+ .+|+|||.||+|++|++.........
T Consensus        50 ~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~   90 (355)
T d1nexb2          50 SGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVF   90 (355)
T ss_dssp             ECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccc
Confidence            379999999999985 58999999999999999887655433

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=8.2e-07  Score=53.75  Aligned_cols=42  Identities=21%  Similarity=0.376  Sum_probs=35.5

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ..|.+.|.+++|  ++++|+|||.||+|++|++..+........
T Consensus        52 ~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~   93 (293)
T d1p22a2          52 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH   93 (293)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC
T ss_pred             ecCCCCEeeeec--ccceeecccccccccccccccccccccccc
Confidence            479999999988  578999999999999999988876655443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2e-07  Score=57.72  Aligned_cols=35  Identities=26%  Similarity=0.203  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCc----EEEEECCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGL----LKVLKLDTV   46 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~----IklWdi~~~   46 (70)
                      +|.+.|++++|+|++.+||+|++||+    |++||++.+
T Consensus       303 ~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence            57788999999999999999999996    999998653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.31  E-value=7.6e-07  Score=55.10  Aligned_cols=42  Identities=12%  Similarity=0.051  Sum_probs=34.9

Q ss_pred             CCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         12 PNNTKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~L-asGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      ++...+.+++|+|||++| ++++.|++|++||+++++..-++.
T Consensus       241 ~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         241 PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            345678999999999875 788999999999999987665543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.17  E-value=3.5e-06  Score=52.64  Aligned_cols=49  Identities=16%  Similarity=0.108  Sum_probs=39.8

Q ss_pred             eeeecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeEEEEEec
Q psy11104          7 KKIAIPNNTKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus         7 ~~I~~~~~~~V~~va~spdg~~L-asGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      +.+..++...+.+++|+|||+++ ++++.|+.|++||+.+++..-++...
T Consensus        32 ~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_          32 KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             EEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            45666778888999999999876 77788999999999999877655443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.11  E-value=4.3e-06  Score=53.79  Aligned_cols=42  Identities=12%  Similarity=0.180  Sum_probs=35.4

Q ss_pred             CCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         12 PNNTKVNCLAWHQNQG--WIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        12 ~~~~~V~~va~spdg~--~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      ++...+.+++|+|||+  ++++++.|++|++||+++++..-++.
T Consensus       315 ~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         315 SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            3557789999999998  46899999999999999998766554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.08  E-value=3.9e-06  Score=57.59  Aligned_cols=35  Identities=17%  Similarity=0.170  Sum_probs=31.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~~~   48 (70)
                      ...+..++|||||+++++++.||+|++||+.+++.
T Consensus        61 g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~   95 (432)
T d1qksa2          61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP   95 (432)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred             CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCc
Confidence            34699999999999999999999999999987763

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=2.9e-06  Score=53.23  Aligned_cols=41  Identities=2%  Similarity=-0.027  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeEEEE
Q psy11104         12 PNNTKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~L-asGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      +|.+.+.+|+|||||++| ++++.|+.|++|++.........
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~   75 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF   75 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence            577889999999999988 55667999999999876644443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.99  E-value=1.2e-05  Score=49.99  Aligned_cols=47  Identities=17%  Similarity=-0.067  Sum_probs=36.9

Q ss_pred             eeecC-CCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104          8 KIAIP-NNTKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus         8 ~I~~~-~~~~V~~va~spdg~~L-asGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      .|..+ +...+.+++|+|||+++ ++|+.|+.|++||+++++...++..
T Consensus        26 ~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~   74 (337)
T d1pbyb_          26 VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             EEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            34443 34568899999999986 6788999999999999887666544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.92  E-value=1.1e-05  Score=49.58  Aligned_cols=41  Identities=2%  Similarity=-0.009  Sum_probs=33.7

Q ss_pred             CCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         14 NTKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        14 ~~~V~~va~spdg~~L-asGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ...+..++|+|||++| ++++.|+.|++||+++++...++..
T Consensus        31 g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~   72 (301)
T d1l0qa2          31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA   72 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec
Confidence            4567899999999976 6788999999999998876655544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.90  E-value=9.7e-07  Score=59.47  Aligned_cols=42  Identities=7%  Similarity=0.015  Sum_probs=35.7

Q ss_pred             cCCCCCeEEEEEcCCCCEEE-------EEeCCCcEEEEECCCCCeEEEE
Q psy11104         11 IPNNTKVNCLAWHQNQGWIA-------VGGDDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        11 ~~~~~~V~~va~spdg~~La-------sGg~Dg~IklWdi~~~~~~~~~   52 (70)
                      ..|...+.+++|||||++|+       +|+.|++|+|||+++++....+
T Consensus       300 ~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~  348 (426)
T d1hzua2         300 QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV  348 (426)
T ss_dssp             ECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             ecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence            36888999999999999999       5778999999999988755443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.85  E-value=1.6e-05  Score=50.39  Aligned_cols=40  Identities=10%  Similarity=0.105  Sum_probs=33.0

Q ss_pred             CCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCCeEEEEE
Q psy11104         14 NTKVNCLAWHQNQG--WIAVGGDDGLLKVLKLDTVSLTIMII   53 (70)
Q Consensus        14 ~~~V~~va~spdg~--~LasGg~Dg~IklWdi~~~~~~~~~~   53 (70)
                      ...+.+++|+|||+  ++++++.|++|++||.++++..-++.
T Consensus       299 ~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            34578999999997  56888999999999999998765543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.36  E-value=3.3e-05  Score=52.85  Aligned_cols=42  Identities=5%  Similarity=-0.171  Sum_probs=33.0

Q ss_pred             CCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         13 NNTKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        13 ~~~~V~~va~spdg~~L-asGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      |.+.+.+.+|+|||++| ++++.|++|++||.++++....+..
T Consensus       107 ~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~  149 (432)
T d1qksa2         107 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST  149 (432)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeecc
Confidence            44556666788899975 8899999999999999887666554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00028  Score=43.78  Aligned_cols=35  Identities=6%  Similarity=0.120  Sum_probs=26.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEC--CCCC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVG-GDDGLLKVLKL--DTVS   47 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasG-g~Dg~IklWdi--~~~~   47 (70)
                      ....+.+++|+|||++|+.+ ++++.|++|++  +++.
T Consensus       274 ~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         274 TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCc
Confidence            34567889999999986655 56789999965  4544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.18  E-value=0.00027  Score=45.89  Aligned_cols=41  Identities=10%  Similarity=0.042  Sum_probs=33.2

Q ss_pred             CCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCCeEEEEEe
Q psy11104         14 NTKVNCLAWHQNQG--WIAVGGDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        14 ~~~V~~va~spdg~--~LasGg~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ...+.+++|+|||+  ++++++.|+.|++||..+++..-.+..
T Consensus       313 ~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         313 GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            35688999999987  468889999999999999986655443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=96.98  E-value=0.0009  Score=42.49  Aligned_cols=38  Identities=13%  Similarity=-0.011  Sum_probs=30.0

Q ss_pred             eEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCeEEEEEe
Q psy11104         17 VNCLAWHQNQGWIAVGG----------DDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        17 V~~va~spdg~~LasGg----------~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ...++|+|||++|+.++          .|+.|++||..+++....+..
T Consensus        68 ~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~  115 (373)
T d2madh_          68 LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL  115 (373)
T ss_pred             CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEec
Confidence            34799999999998875          468899999999886655443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.94  E-value=0.00068  Score=42.57  Aligned_cols=39  Identities=18%  Similarity=0.069  Sum_probs=30.5

Q ss_pred             CeEEEEEcCCCCEEEEE----------eCCCcEEEEECCCCCeEEEEEe
Q psy11104         16 KVNCLAWHQNQGWIAVG----------GDDGLLKVLKLDTVSLTIMIIL   54 (70)
Q Consensus        16 ~V~~va~spdg~~LasG----------g~Dg~IklWdi~~~~~~~~~~~   54 (70)
                      ....++|||||++|+..          +.||.|++||.++++..-.+..
T Consensus        48 ~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~   96 (355)
T d2bbkh_          48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL   96 (355)
T ss_dssp             SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEec
Confidence            44578999999987753          4589999999999887665544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.76  E-value=0.00025  Score=47.54  Aligned_cols=35  Identities=9%  Similarity=0.121  Sum_probs=29.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGD---------DGLLKVLKLDTVS   47 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~---------Dg~IklWdi~~~~   47 (70)
                      |...|.+++|||||++||.+++         ++.+.|||+++++
T Consensus        60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~  103 (470)
T d2bgra1          60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ  103 (470)
T ss_dssp             SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred             ccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc
Confidence            4567999999999999998854         5778999998875

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.63  E-value=0.0014  Score=43.76  Aligned_cols=44  Identities=7%  Similarity=0.001  Sum_probs=35.1

Q ss_pred             CCCCCeEEEEEcCCCCEEE---EEeCCCcEEEEECCCCCeEEEEEec
Q psy11104         12 PNNTKVNCLAWHQNQGWIA---VGGDDGLLKVLKLDTVSLTIMIILF   55 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~La---sGg~Dg~IklWdi~~~~~~~~~~~~   55 (70)
                      +|...+.+++|||||++++   +|..+-.+++|+..++++...+..+
T Consensus       413 ~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~n  459 (470)
T d2bgra1         413 PERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDN  459 (470)
T ss_dssp             TTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEECC
T ss_pred             CCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEecc
Confidence            4667789999999999877   4555567999999998887777654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.55  E-value=0.0097  Score=38.20  Aligned_cols=35  Identities=6%  Similarity=-0.106  Sum_probs=28.4

Q ss_pred             EEEEEcCCCCEEEEEe-CCCcEEEEECCCCCeEEEE
Q psy11104         18 NCLAWHQNQGWIAVGG-DDGLLKVLKLDTVSLTIMI   52 (70)
Q Consensus        18 ~~va~spdg~~LasGg-~Dg~IklWdi~~~~~~~~~   52 (70)
                      ..++|+|||++|+.++ .++.+.+||+.+.+..-.+
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~  162 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT  162 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEE
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEe
Confidence            4689999999987765 6799999999988765443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=93.39  E-value=0.11  Score=32.88  Aligned_cols=35  Identities=20%  Similarity=0.150  Sum_probs=26.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104         12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        12 ~~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      |....+..++++|||+++++...+++|..|+....
T Consensus        25 p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~   59 (302)
T d2p4oa1          25 PVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGN   59 (302)
T ss_dssp             CTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCC
T ss_pred             CCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC
Confidence            44456788888888888888888888877775543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=92.19  E-value=0.041  Score=38.71  Aligned_cols=31  Identities=16%  Similarity=0.194  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCEE-EEEeCCCcEEEEECCC
Q psy11104         15 TKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDT   45 (70)
Q Consensus        15 ~~V~~va~spdg~~L-asGg~Dg~IklWdi~~   45 (70)
                      .....++++|||+++ ++|..|++|.+||++.
T Consensus       258 ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         258 KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             CCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            345789999999975 7789999999999754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.16  E-value=0.14  Score=30.69  Aligned_cols=36  Identities=8%  Similarity=0.013  Sum_probs=26.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCe
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGD---DGLLKVLKLDTVSL   48 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~---Dg~IklWdi~~~~~   48 (70)
                      +........|||||+.||-.+.   ...+.++++.++..
T Consensus       212 ~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         212 STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            3455678899999999875443   34788899877653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=92.14  E-value=0.13  Score=32.35  Aligned_cols=34  Identities=26%  Similarity=0.304  Sum_probs=28.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV   46 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~Dg~IklWdi~~~   46 (70)
                      ..+.+++++|+|||++++++..++.+..|+....
T Consensus        66 ~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          66 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             CCCCcceEEEcCCCCeEEEecCCceEEEEEeccc
Confidence            4567899999999999999989998888876543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=88.85  E-value=1.2  Score=28.84  Aligned_cols=34  Identities=9%  Similarity=0.094  Sum_probs=24.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTV   46 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg~-Dg~IklWdi~~~   46 (70)
                      ...-+.+++|+|||++++.++. ...|.+++....
T Consensus       143 ~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~  177 (365)
T d1jofa_         143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS  177 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCC
Confidence            3445789999999998777653 447888876543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=88.73  E-value=1.5  Score=28.30  Aligned_cols=36  Identities=11%  Similarity=0.141  Sum_probs=28.8

Q ss_pred             CCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCe
Q psy11104         13 NNTKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTVSL   48 (70)
Q Consensus        13 ~~~~V~~va~spdg~~L-asGg~Dg~IklWdi~~~~~   48 (70)
                      .....+.++|+|+|+++ +++-.+++|.+|++..+..
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~  227 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCc
Confidence            45678999999999876 5566788999999877653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.56  E-value=1  Score=26.57  Aligned_cols=35  Identities=14%  Similarity=0.145  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCe
Q psy11104         14 NTKVNCLAWHQNQGWIAVGGDDG---LLKVLKLDTVSL   48 (70)
Q Consensus        14 ~~~V~~va~spdg~~LasGg~Dg---~IklWdi~~~~~   48 (70)
                      ...+..-+|||||+.||-...+.   .+.+.+..++..
T Consensus        38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~   75 (269)
T d2hqsa1          38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV   75 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred             CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce
Confidence            45677899999999998654433   344445555443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=87.23  E-value=0.5  Score=27.92  Aligned_cols=35  Identities=14%  Similarity=-0.017  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe----CCC--cEEEEECCCCC
Q psy11104         13 NNTKVNCLAWHQNQGWIAVGG----DDG--LLKVLKLDTVS   47 (70)
Q Consensus        13 ~~~~V~~va~spdg~~LasGg----~Dg--~IklWdi~~~~   47 (70)
                      +.+.+...+|||||+.||-.+    .+.  .|.+.+..++.
T Consensus        39 ~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2          39 NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            345678899999999988543    222  25555655554

>d1c8ua2 d.38.1.3 (A:116-286) Thioesterase II (TesB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: Acyl-CoA thioesterase
domain: Thioesterase II (TesB)
species: Escherichia coli [TaxId: 562]

Probab=83.88  E-value=0.17  Score=30.22  Aligned_cols=27  Identities=15%  Similarity=0.118  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEE
Q psy11104         15 TKVNCLAWHQNQGWIAVGGDDGLLKVL   41 (70)
Q Consensus        15 ~~V~~va~spdg~~LasGg~Dg~IklW   41 (70)
                      +-+.+=-|+.+|.++||+..+|.||+-
T Consensus       144 gl~~g~i~~~dG~LvAs~~QEgl~R~~  170 (171)
T d1c8ua2         144 GFVRGEFYTQDGVLVASTVQEGVMRNH  170 (171)
T ss_dssp             EEEEEEEEETTCCEEEEEEEEEEEEEC
T ss_pred             eEEEEEEECCCCCEEEEEEEEEEEEec
Confidence            345555688899999999999988873